RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy2035
(141 letters)
>1ux6_A Thrombospondin-1; extracellular matrix, calcium binding, L-type
lectin, glycoprotein, cell adhesion, calcium-binding,
heparin- binding; 1.9A {Homo sapiens} SCOP: b.29.1.16
g.75.1.1
Length = 350
Score = 73.1 bits (179), Expect = 2e-16
Identities = 34/51 (66%), Positives = 40/51 (78%)
Query: 2 DNCPKVANPNQLDNDRDGKGDECDPDLDGDGISNDEDNCRLIYNPNQDDSD 52
DNCP V N NQ D+D+DGKGD CD D D DGI +D+DNCRL+ NP+Q DSD
Sbjct: 52 DNCPYVPNANQADHDKDGKGDACDHDDDNDGIPDDKDNCRLVPNPDQKDSD 102
Score = 68.5 bits (167), Expect = 8e-15
Identities = 27/54 (50%), Positives = 33/54 (61%), Gaps = 2/54 (3%)
Query: 1 MDNCPKVANPNQLDNDRDGKGDEC--DPDLDGDGISNDEDNCRLIYNPNQDDSD 52
DNCP NP+QLD+D D GD C + D+D DG N+ DNC + N NQ D D
Sbjct: 13 ADNCPLEHNPDQLDSDSDRIGDTCDNNQDIDEDGHQNNLDNCPYVPNANQADHD 66
Score = 64.6 bits (157), Expect = 2e-13
Identities = 20/53 (37%), Positives = 29/53 (54%)
Query: 2 DNCPKVANPNQLDNDRDGKGDECDPDLDGDGISNDEDNCRLIYNPNQDDSDAH 54
DNC V NP+Q D+D DG+GD C D D D + + +D C + ++ D
Sbjct: 88 DNCRLVPNPDQKDSDGDGRGDACKDDFDHDSVPDIDDICPENVDISETDFRRF 140
>1yo8_A Thrombospondin-2; EGF, Ca(2+)-binding domains, lectin domain,
disulfide, cell; HET: NAG MAN; 2.60A {Homo sapiens} PDB:
2rhp_A*
Length = 634
Score = 62.7 bits (152), Expect = 1e-12
Identities = 32/51 (62%), Positives = 42/51 (82%)
Query: 2 DNCPKVANPNQLDNDRDGKGDECDPDLDGDGISNDEDNCRLIYNPNQDDSD 52
DNCP ++N NQ D+DRDG+GD CDPD D DG+ +D DNCRL++NP+Q+D D
Sbjct: 327 DNCPYISNANQADHDRDGQGDACDPDDDNDGVPDDRDNCRLVFNPDQEDLD 377
Score = 58.9 bits (142), Expect = 3e-11
Identities = 27/51 (52%), Positives = 36/51 (70%)
Query: 2 DNCPKVANPNQLDNDRDGKGDECDPDLDGDGISNDEDNCRLIYNPNQDDSD 52
DNCP V NP Q+D D +G+GD C D+DGD + N+ DNC +YN +Q D+D
Sbjct: 230 DNCPYVHNPAQIDTDNNGEGDACSVDIDGDDVFNERDNCPYVYNTDQRDTD 280
Score = 55.4 bits (133), Expect = 4e-10
Identities = 22/58 (37%), Positives = 28/58 (48%)
Query: 2 DNCPKVANPNQLDNDRDGKGDECDPDLDGDGISNDEDNCRLIYNPNQDDSDAHYNADL 59
DNC V NP+Q D D DG+GD C D D D I + +D C ++ D L
Sbjct: 363 DNCRLVFNPDQEDLDGDGRGDICKDDFDNDNIPDIDDVCPENNAISETDFRNFQMVPL 420
Score = 51.2 bits (122), Expect = 1e-08
Identities = 29/53 (54%), Positives = 34/53 (64%), Gaps = 2/53 (3%)
Query: 2 DNCPKVANPNQLDNDRDGKGDECD--PDLDGDGISNDEDNCRLIYNPNQDDSD 52
DNCP V NP+Q D D D GD+CD D+D DG N++DNC I N NQ D D
Sbjct: 289 DNCPLVHNPDQTDVDNDLVGDQCDNNEDIDDDGHQNNQDNCPYISNANQADHD 341
Score = 38.1 bits (88), Expect = 4e-04
Identities = 28/57 (49%), Positives = 38/57 (66%)
Query: 2 DNCPKVANPNQLDNDRDGKGDECDPDLDGDGISNDEDNCRLIYNPNQDDSDAHYNAD 58
DNCP + N Q D D+DG GD CD D D DG+++++DNC+L++NP Q D D D
Sbjct: 171 DNCPHLPNSGQEDFDKDGIGDACDDDDDNDGVTDEKDNCQLLFNPRQADYDKDEVGD 227
Score = 33.8 bits (77), Expect = 0.014
Identities = 11/44 (25%), Positives = 16/44 (36%)
Query: 9 NPNQLDNDRDGKGDECDPDLDGDGISNDEDNCRLIYNPNQDDSD 52
D+D DG + +DNC + N Q+D D
Sbjct: 142 LICGEDSDLDGWPNLNLVCATNATYHCIKDNCPHLPNSGQEDFD 185
Score = 30.0 bits (67), Expect = 0.29
Identities = 14/51 (27%), Positives = 15/51 (29%), Gaps = 12/51 (23%)
Query: 2 DNCPKVANPNQLDNDRDGK------------GDECDPDLDGDGISNDEDNC 40
NC K A L + D G C D D DG N C
Sbjct: 110 HNCHKHAECIYLGHFSDPMYKCECQTGYAGDGLICGEDSDLDGWPNLNLVC 160
>3fby_A COMP, cartilage oligomeric matrix protein; signature domain, cell
adhesion, disease mutation, dwarfism, EGF-like domain,
glycoprotein, secreted; HET: NAG MAN; 3.15A {Homo
sapiens}
Length = 551
Score = 62.3 bits (151), Expect = 2e-12
Identities = 29/51 (56%), Positives = 36/51 (70%)
Query: 2 DNCPKVANPNQLDNDRDGKGDECDPDLDGDGISNDEDNCRLIYNPNQDDSD 52
DNCP V N Q D+D DG+GD CD D D DG+ + DNCRL+ NP Q+D+D
Sbjct: 238 DNCPTVPNSAQEDSDHDGQGDACDDDDDNDGVPDSRDNCRLVPNPGQEDAD 288
Score = 61.9 bits (150), Expect = 2e-12
Identities = 30/51 (58%), Positives = 37/51 (72%)
Query: 2 DNCPKVANPNQLDNDRDGKGDECDPDLDGDGISNDEDNCRLIYNPNQDDSD 52
DNC V N Q D DRDG GD CDPD DGDG+ N++DNC L+ NP+Q ++D
Sbjct: 82 DNCVTVPNSGQEDVDRDGIGDACDPDADGDGVPNEKDNCPLVRNPDQRNTD 132
Score = 59.2 bits (143), Expect = 2e-11
Identities = 27/51 (52%), Positives = 33/51 (64%)
Query: 2 DNCPKVANPNQLDNDRDGKGDECDPDLDGDGISNDEDNCRLIYNPNQDDSD 52
DNC N +Q D D+DG+GD CD D+DGD I N DNC + N +Q DSD
Sbjct: 141 DNCRSQKNDDQKDTDQDGRGDACDDDIDGDRIRNQADNCPRVPNSDQKDSD 191
Score = 56.1 bits (135), Expect = 2e-10
Identities = 23/58 (39%), Positives = 25/58 (43%)
Query: 2 DNCPKVANPNQLDNDRDGKGDECDPDLDGDGISNDEDNCRLIYNPNQDDSDAHYNADL 59
DNC V NP Q D DRDG GD C D D D + + D C D A L
Sbjct: 274 DNCRLVPNPGQEDADRDGVGDVCQDDFDADKVVDKIDVCPENAEVTLTDFRAFQTVVL 331
Score = 49.9 bits (119), Expect = 3e-08
Identities = 27/53 (50%), Positives = 33/53 (62%), Gaps = 2/53 (3%)
Query: 2 DNCPKVANPNQLDNDRDGKGDECD--PDLDGDGISNDEDNCRLIYNPNQDDSD 52
DNCP+ +NP+Q D D D GD CD D DGDG + DNC + N Q+DSD
Sbjct: 200 DNCPQKSNPDQADVDHDFVGDACDSDQDQDGDGHQDSRDNCPTVPNSAQEDSD 252
Score = 32.6 bits (74), Expect = 0.030
Identities = 14/45 (31%), Positives = 19/45 (42%), Gaps = 10/45 (22%)
Query: 18 DGKGDECDPDLDGDGISND----------EDNCRLIYNPNQDDSD 52
G G C D D DG ++ +DNC + N Q+D D
Sbjct: 52 AGNGILCGRDTDLDGFPDEKLRCPERQCRKDNCVTVPNSGQEDVD 96
>1y81_A Conserved hypothetical protein; hyperthermophIle, structural
genomics, PSI, protein structure initiative; HET: COA;
1.70A {Pyrococcus furiosus} SCOP: c.2.1.8
Length = 138
Score = 25.7 bits (57), Expect = 3.8
Identities = 3/12 (25%), Positives = 4/12 (33%)
Query: 1 MDNCPKVANPNQ 12
C V N+
Sbjct: 121 FGRCIMVETSNK 132
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.312 0.127 0.380
Gapped
Lambda K H
0.267 0.0587 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,994,855
Number of extensions: 102399
Number of successful extensions: 214
Number of sequences better than 10.0: 1
Number of HSP's gapped: 144
Number of HSP's successfully gapped: 28
Length of query: 141
Length of database: 6,701,793
Length adjustment: 84
Effective length of query: 57
Effective length of database: 4,356,429
Effective search space: 248316453
Effective search space used: 248316453
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 52 (24.1 bits)