RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy2035
         (141 letters)



>d1ux6a2 g.75.1.1 (A:813-936) Thrombospondin-1 {Human (Homo
          sapiens) [TaxId: 9606]}
          Length = 124

 Score = 52.2 bits (124), Expect = 3e-10
 Identities = 28/54 (51%), Positives = 33/54 (61%), Gaps = 2/54 (3%)

Query: 1  MDNCPKVANPNQLDNDRDGKGDECDP--DLDGDGISNDEDNCRLIYNPNQDDSD 52
           DNCP   NP+QLD+D D  GD CD   D+D DG  N+ DNC  + N NQ D D
Sbjct: 3  ADNCPLEHNPDQLDSDSDRIGDTCDNNQDIDEDGHQNNLDNCPYVPNANQADHD 56



 Score = 40.6 bits (94), Expect = 6e-06
 Identities = 19/40 (47%), Positives = 25/40 (62%)

Query: 1   MDNCPKVANPNQLDNDRDGKGDECDPDLDGDGISNDEDNC 40
            DNC  V NP+Q D+D DG+GD C  D D D + + +D C
Sbjct: 77  KDNCRLVPNPDQKDSDGDGRGDACKDDFDHDSVPDIDDIC 116



 Score = 31.8 bits (71), Expect = 0.011
 Identities = 35/57 (61%), Positives = 41/57 (71%)

Query: 2  DNCPKVANPNQLDNDRDGKGDECDPDLDGDGISNDEDNCRLIYNPNQDDSDAHYNAD 58
          DNCP V N NQ D+D+DGKGD CD D D DGI +D+DNCRL+ NP+Q DSD     D
Sbjct: 42 DNCPYVPNANQADHDKDGKGDACDHDDDNDGIPDDKDNCRLVPNPDQKDSDGDGRGD 98


>d2foka3 a.4.5.12 (A:287-386) Restriction endonuclease FokI,
          N-terminal (recognition) domain {Flavobacterium
          okeanokoites [TaxId: 244]}
          Length = 100

 Score = 25.6 bits (56), Expect = 1.2
 Identities = 9/28 (32%), Positives = 14/28 (50%)

Query: 68 WAMYVTKISTKMELRTYQMCVLTILSST 95
          W M  T ++ K  +RT +  +L IL   
Sbjct: 7  WEMLATNLTDKEYVRTRRALILEILIKA 34


>d2iw5b1 a.4.1.3 (B:376-440) REST corepressor 1, CoREST {Human
          (Homo sapiens) [TaxId: 9606]}
          Length = 65

 Score = 22.9 bits (49), Expect = 8.3
 Identities = 3/31 (9%), Positives = 11/31 (35%)

Query: 58 DLILMRQVMAWAMYVTKISTKMELRTYQMCV 88
           L+ ++ +  +      IS  +  ++     
Sbjct: 13 QLLAVQAIRKYGRDFQAISDVIGNKSVVQVK 43


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.312    0.127    0.380 

Gapped
Lambda     K      H
   0.267   0.0635    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 493,083
Number of extensions: 19644
Number of successful extensions: 24
Number of sequences better than 10.0: 1
Number of HSP's gapped: 21
Number of HSP's successfully gapped: 7
Length of query: 141
Length of database: 2,407,596
Length adjustment: 77
Effective length of query: 64
Effective length of database: 1,350,386
Effective search space: 86424704
Effective search space used: 86424704
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 48 (22.5 bits)