BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy2044
(452 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1ICC|A Chain A, Rat Outer Mitochondrial Membrane Cytochrome B5
pdb|1ICC|B Chain B, Rat Outer Mitochondrial Membrane Cytochrome B5
pdb|1ICC|C Chain C, Rat Outer Mitochondrial Membrane Cytochrome B5
pdb|1ICC|D Chain D, Rat Outer Mitochondrial Membrane Cytochrome B5
Length = 87
Score = 45.8 bits (107), Expect = 4e-05, Method: Composition-based stats.
Identities = 20/56 (35%), Positives = 30/56 (53%)
Query: 58 RKHNVAKFLKFHPGGSNTIKYFKNGDITEQLIKTHHSPSAYELLKDYRVSDDNPQE 113
R +++ +FL HPGG ++ D TE HSP A E+LK Y + D +P +
Sbjct: 28 RVYDLTRFLSEHPGGEEVLREQAGADATESFEDVGHSPDAREMLKQYYIGDVHPND 83
Score = 33.9 bits (76), Expect = 0.19, Method: Composition-based stats.
Identities = 16/50 (32%), Positives = 25/50 (50%)
Query: 2 SQEFLIEHKGQKHNVAKFLKFHPGGSNTIKYFKNGDITEQLIKTHHSPSA 51
S+E + G+ +++ +FL HPGG ++ D TE HSP A
Sbjct: 18 SEETWMVIHGRVYDLTRFLSEHPGGEEVLREQAGADATESFEDVGHSPDA 67
>pdb|3MUS|A Chain A, 2a Resolution Structure Of Rat Type B Cytochrome B5
pdb|3MUS|B Chain B, 2a Resolution Structure Of Rat Type B Cytochrome B5
Length = 87
Score = 45.1 bits (105), Expect = 8e-05, Method: Composition-based stats.
Identities = 20/56 (35%), Positives = 29/56 (51%)
Query: 58 RKHNVAKFLKFHPGGSNTIKYFKNGDITEQLIKTHHSPSAYELLKDYRVSDDNPQE 113
R +++ +FL HPGG + D TE HSP A E+LK Y + D +P +
Sbjct: 28 RVYDITRFLSEHPGGEEVLLEQAGADATESFEDVGHSPDAREMLKQYYIGDVHPND 83
Score = 32.3 bits (72), Expect = 0.62, Method: Composition-based stats.
Identities = 14/41 (34%), Positives = 20/41 (48%)
Query: 11 GQKHNVAKFLKFHPGGSNTIKYFKNGDITEQLIKTHHSPSA 51
G+ +++ +FL HPGG + D TE HSP A
Sbjct: 27 GRVYDITRFLSEHPGGEEVLLEQAGADATESFEDVGHSPDA 67
>pdb|1B5M|A Chain A, Rat Outer Mitochondrial Membrane Cytochrome B5
Length = 84
Score = 45.1 bits (105), Expect = 9e-05, Method: Composition-based stats.
Identities = 20/56 (35%), Positives = 29/56 (51%)
Query: 58 RKHNVAKFLKFHPGGSNTIKYFKNGDITEQLIKTHHSPSAYELLKDYRVSDDNPQE 113
R +++ +FL HPGG + D TE HSP A E+LK Y + D +P +
Sbjct: 26 RVYDITRFLSEHPGGEEVLLEQAGADATESFEDVGHSPDAREMLKQYYIGDVHPND 81
Score = 32.0 bits (71), Expect = 0.64, Method: Composition-based stats.
Identities = 14/41 (34%), Positives = 20/41 (48%)
Query: 11 GQKHNVAKFLKFHPGGSNTIKYFKNGDITEQLIKTHHSPSA 51
G+ +++ +FL HPGG + D TE HSP A
Sbjct: 25 GRVYDITRFLSEHPGGEEVLLEQAGADATESFEDVGHSPDA 65
>pdb|2I89|A Chain A, Structure Of Septuple Mutant Of Rat Outer Mitochondrial
Membrane Cytochrome B5
pdb|2I89|B Chain B, Structure Of Septuple Mutant Of Rat Outer Mitochondrial
Membrane Cytochrome B5
pdb|2I89|C Chain C, Structure Of Septuple Mutant Of Rat Outer Mitochondrial
Membrane Cytochrome B5
pdb|2I89|D Chain D, Structure Of Septuple Mutant Of Rat Outer Mitochondrial
Membrane Cytochrome B5
Length = 93
Score = 45.1 bits (105), Expect = 9e-05, Method: Composition-based stats.
Identities = 25/89 (28%), Positives = 42/89 (47%), Gaps = 4/89 (4%)
Query: 25 GGSNTIKYFKNGDITEQLIKTHHSPSAYGHHVPRKHNVAKFLKFHPGGSNTIKYFKNGDI 84
G + Y++ E++ K + S S + R +++ +FL HPGG ++ D
Sbjct: 5 GSDPAVTYYR----LEEVAKHNTSESTWMVLHGRVYDLTRFLSEHPGGEEVLREQAGADA 60
Query: 85 TEQLIKTHHSPSAYELLKDYRVSDDNPQE 113
TE HSP A E+ K Y + D +P +
Sbjct: 61 TESFEDVGHSPDAREMSKQYYIGDVHPND 89
Score = 33.1 bits (74), Expect = 0.33, Method: Composition-based stats.
Identities = 14/41 (34%), Positives = 21/41 (51%)
Query: 11 GQKHNVAKFLKFHPGGSNTIKYFKNGDITEQLIKTHHSPSA 51
G+ +++ +FL HPGG ++ D TE HSP A
Sbjct: 33 GRVYDLTRFLSEHPGGEEVLREQAGADATESFEDVGHSPDA 73
>pdb|2M33|A Chain A, Solution Nmr Structure Of Full-length Oxidized Microsomal
Rabbit Cytochrome B5
Length = 104
Score = 44.7 bits (104), Expect = 1e-04, Method: Composition-based stats.
Identities = 29/98 (29%), Positives = 50/98 (51%), Gaps = 8/98 (8%)
Query: 30 IKYFKNGDITEQLIKTHHSPSAYG--HHVPRKHNVAKFLKFHPGGSNTIKYFKNGDITEQ 87
+KY+ E++ K +HS S + HH + +++ KFL+ HPGG ++ GD TE
Sbjct: 9 VKYYT----LEEIKKHNHSKSTWLILHH--KVYDLTKFLEEHPGGEEVLREQAGGDATEN 62
Query: 88 LIKTHHSPSAYELLKDYRVSDDNPQEYIREEGDIEHLV 125
HS A EL K + + + +P + + +E L+
Sbjct: 63 FEDVGHSTDARELSKTFIIGELHPDDRSKLSKPMETLI 100
Score = 32.0 bits (71), Expect = 0.72, Method: Composition-based stats.
Identities = 17/50 (34%), Positives = 25/50 (50%), Gaps = 2/50 (4%)
Query: 2 SQEFLIEHKGQKHNVAKFLKFHPGGSNTIKYFKNGDITEQLIKTHHSPSA 51
S ++ HK +++ KFL+ HPGG ++ GD TE HS A
Sbjct: 25 STWLILHHK--VYDLTKFLEEHPGGEEVLREQAGGDATENFEDVGHSTDA 72
>pdb|1EUE|A Chain A, Rat Outer Mitochondrial Membrane Cytochrome B5
pdb|1EUE|B Chain B, Rat Outer Mitochondrial Membrane Cytochrome B5
Length = 86
Score = 44.3 bits (103), Expect = 1e-04, Method: Composition-based stats.
Identities = 20/56 (35%), Positives = 29/56 (51%)
Query: 58 RKHNVAKFLKFHPGGSNTIKYFKNGDITEQLIKTHHSPSAYELLKDYRVSDDNPQE 113
R +++ +FL HPGG + D TE HSP A E+LK Y + D +P +
Sbjct: 28 RVYDITRFLSEHPGGEEILLEQAGADATESFEDIGHSPDAREMLKQYYIGDVHPND 83
Score = 31.6 bits (70), Expect = 1.00, Method: Composition-based stats.
Identities = 14/41 (34%), Positives = 20/41 (48%)
Query: 11 GQKHNVAKFLKFHPGGSNTIKYFKNGDITEQLIKTHHSPSA 51
G+ +++ +FL HPGG + D TE HSP A
Sbjct: 27 GRVYDITRFLSEHPGGEEILLEQAGADATESFEDIGHSPDA 67
>pdb|1AWP|A Chain A, Rat Outer Mitochondrial Membrane Cytochrome B5
pdb|1AWP|B Chain B, Rat Outer Mitochondrial Membrane Cytochrome B5
Length = 92
Score = 44.3 bits (103), Expect = 1e-04, Method: Composition-based stats.
Identities = 20/56 (35%), Positives = 29/56 (51%)
Query: 58 RKHNVAKFLKFHPGGSNTIKYFKNGDITEQLIKTHHSPSAYELLKDYRVSDDNPQE 113
R +++ +FL HPGG + D TE HSP A E+LK Y + D +P +
Sbjct: 33 RVYDITRFLSEHPGGEELLLEQAGADATESFEDLGHSPDAREMLKQYYIGDVHPND 88
Score = 31.2 bits (69), Expect = 1.1, Method: Composition-based stats.
Identities = 14/41 (34%), Positives = 20/41 (48%)
Query: 11 GQKHNVAKFLKFHPGGSNTIKYFKNGDITEQLIKTHHSPSA 51
G+ +++ +FL HPGG + D TE HSP A
Sbjct: 32 GRVYDITRFLSEHPGGEELLLEQAGADATESFEDLGHSPDA 72
>pdb|1LJ0|A Chain A, Structure Of Quintuple Mutant Of The Rat Outer
Mitocondrial Cytochrome B5.
pdb|1LJ0|B Chain B, Structure Of Quintuple Mutant Of The Rat Outer
Mitocondrial Cytochrome B5.
pdb|1LJ0|C Chain C, Structure Of Quintuple Mutant Of The Rat Outer
Mitocondrial Cytochrome B5.
pdb|1LJ0|D Chain D, Structure Of Quintuple Mutant Of The Rat Outer
Mitocondrial Cytochrome B5
Length = 92
Score = 44.3 bits (103), Expect = 2e-04, Method: Composition-based stats.
Identities = 24/89 (26%), Positives = 41/89 (46%), Gaps = 4/89 (4%)
Query: 25 GGSNTIKYFKNGDITEQLIKTHHSPSAYGHHVPRKHNVAKFLKFHPGGSNTIKYFKNGDI 84
G + Y++ E++ K + S + R +++ +FL HPGG ++ D
Sbjct: 4 GSDPAVTYYR----LEEVAKRNTSEETWMVLHGRVYDLTRFLSEHPGGEEVLREQAGADA 59
Query: 85 TEQLIKTHHSPSAYELLKDYRVSDDNPQE 113
TE HSP A E+ K Y + D +P +
Sbjct: 60 TESFEDVGHSPDAREMSKQYYIGDVHPND 88
Score = 34.3 bits (77), Expect = 0.13, Method: Composition-based stats.
Identities = 16/50 (32%), Positives = 25/50 (50%)
Query: 2 SQEFLIEHKGQKHNVAKFLKFHPGGSNTIKYFKNGDITEQLIKTHHSPSA 51
S+E + G+ +++ +FL HPGG ++ D TE HSP A
Sbjct: 23 SEETWMVLHGRVYDLTRFLSEHPGGEEVLREQAGADATESFEDVGHSPDA 72
>pdb|1HKO|A Chain A, Nmr Structure Of Bovine Cytochrome B5
Length = 104
Score = 42.0 bits (97), Expect = 7e-04, Method: Composition-based stats.
Identities = 25/87 (28%), Positives = 44/87 (50%), Gaps = 4/87 (4%)
Query: 27 SNTIKYFKNGDITEQLIKTHHSPSAYGHHVPRKHNVAKFLKFHPGGSNTIKYFKNGDITE 86
S +KY+ E++ K ++S S + + +++ KFL+ HPGG ++ GD TE
Sbjct: 5 SKAVKYYT----LEEIQKHNNSKSTWLILHYKVYDLTKFLEEHPGGEEVLREQAGGDATE 60
Query: 87 QLIKTHHSPSAYELLKDYRVSDDNPQE 113
HS A EL K + + + +P +
Sbjct: 61 NFEDVGHSTDARELSKTFIIGELHPDD 87
Score = 32.0 bits (71), Expect = 0.74, Method: Composition-based stats.
Identities = 14/38 (36%), Positives = 20/38 (52%)
Query: 14 HNVAKFLKFHPGGSNTIKYFKNGDITEQLIKTHHSPSA 51
+++ KFL+ HPGG ++ GD TE HS A
Sbjct: 34 YDLTKFLEEHPGGEEVLREQAGGDATENFEDVGHSTDA 71
>pdb|1BFX|A Chain A, The Solution Nmr Structure Of The B Form Of Oxidized Rat
Microsomal Cytochrome B5, Minimized Average Structure
Length = 99
Score = 41.6 bits (96), Expect = 8e-04, Method: Composition-based stats.
Identities = 26/84 (30%), Positives = 41/84 (48%), Gaps = 4/84 (4%)
Query: 30 IKYFKNGDITEQLIKTHHSPSAYGHHVPRKHNVAKFLKFHPGGSNTIKYFKNGDITEQLI 89
+KY+ +I + K S HH + +++ KFL+ HPGG ++ GD TE
Sbjct: 9 VKYYTLEEIQKH--KDSKSTWVILHH--KVYDLTKFLEEHPGGEEVLREQAGGDATENFE 64
Query: 90 KTHHSPSAYELLKDYRVSDDNPQE 113
HS A EL K Y + + +P +
Sbjct: 65 DVGHSTDARELSKTYIIGELHPDD 88
Score = 32.0 bits (71), Expect = 0.73, Method: Composition-based stats.
Identities = 16/46 (34%), Positives = 24/46 (52%), Gaps = 2/46 (4%)
Query: 6 LIEHKGQKHNVAKFLKFHPGGSNTIKYFKNGDITEQLIKTHHSPSA 51
++ HK +++ KFL+ HPGG ++ GD TE HS A
Sbjct: 29 ILHHK--VYDLTKFLEEHPGGEEVLREQAGGDATENFEDVGHSTDA 72
>pdb|1I87|A Chain A, Solution Structure Of The Water-Soluble Fragment Of Rat
Hepatic Apocytochrome B5
pdb|1I8C|A Chain A, Solution Structure Of The Water-Soluble Fragment Of Rat
Hepatic Apocytochrome B5
pdb|1IET|A Chain A, Apocytochrome B5, Ph 6.2, 298 K, Nmr, Minimized Average
Structure
pdb|1IEU|A Chain A, Apocytochrome B5, Ph 6.2, 298 K, Nmr, 10 Structures
Length = 98
Score = 41.6 bits (96), Expect = 8e-04, Method: Composition-based stats.
Identities = 26/84 (30%), Positives = 41/84 (48%), Gaps = 4/84 (4%)
Query: 30 IKYFKNGDITEQLIKTHHSPSAYGHHVPRKHNVAKFLKFHPGGSNTIKYFKNGDITEQLI 89
+KY+ +I + K S HH + +++ KFL+ HPGG ++ GD TE
Sbjct: 8 VKYYTLEEIQKH--KDSKSTWVILHH--KVYDLTKFLEEHPGGEEVLREQAGGDATENFE 63
Query: 90 KTHHSPSAYELLKDYRVSDDNPQE 113
HS A EL K Y + + +P +
Sbjct: 64 DVGHSTDARELSKTYIIGELHPDD 87
Score = 32.0 bits (71), Expect = 0.75, Method: Composition-based stats.
Identities = 16/46 (34%), Positives = 24/46 (52%), Gaps = 2/46 (4%)
Query: 6 LIEHKGQKHNVAKFLKFHPGGSNTIKYFKNGDITEQLIKTHHSPSA 51
++ HK +++ KFL+ HPGG ++ GD TE HS A
Sbjct: 28 ILHHK--VYDLTKFLEEHPGGEEVLREQAGGDATENFEDVGHSTDA 71
>pdb|1AQA|A Chain A, Solution Structure Of Reduced Microsomal Rat Cytochrome
B5, Nmr, Minimized Average Structure
pdb|1MNY|A Chain A, Dimethyl Propionate Ester Heme-Containing Cytochrome B5
pdb|2AXX|A Chain A, The Solution Structure Of Oxidized Rat Microsomal
Cytochrome B5, Nmr, 21 Structures
Length = 94
Score = 41.6 bits (96), Expect = 0.001, Method: Composition-based stats.
Identities = 26/84 (30%), Positives = 41/84 (48%), Gaps = 4/84 (4%)
Query: 30 IKYFKNGDITEQLIKTHHSPSAYGHHVPRKHNVAKFLKFHPGGSNTIKYFKNGDITEQLI 89
+KY+ +I + K S HH + +++ KFL+ HPGG ++ GD TE
Sbjct: 4 VKYYTLEEIQKH--KDSKSTWVILHH--KVYDLTKFLEEHPGGEEVLREQAGGDATENFE 59
Query: 90 KTHHSPSAYELLKDYRVSDDNPQE 113
HS A EL K Y + + +P +
Sbjct: 60 DVGHSTDARELSKTYIIGELHPDD 83
Score = 31.6 bits (70), Expect = 0.91, Method: Composition-based stats.
Identities = 16/46 (34%), Positives = 24/46 (52%), Gaps = 2/46 (4%)
Query: 6 LIEHKGQKHNVAKFLKFHPGGSNTIKYFKNGDITEQLIKTHHSPSA 51
++ HK +++ KFL+ HPGG ++ GD TE HS A
Sbjct: 24 ILHHK--VYDLTKFLEEHPGGEEVLREQAGGDATENFEDVGHSTDA 67
>pdb|1IB7|A Chain A, Solution Structure Of F35y Mutant Of Rat Ferro Cytochrome
B5, A Conformation, Ensemble Of 20 Structures
Length = 94
Score = 40.0 bits (92), Expect = 0.003, Method: Composition-based stats.
Identities = 25/84 (29%), Positives = 41/84 (48%), Gaps = 4/84 (4%)
Query: 30 IKYFKNGDITEQLIKTHHSPSAYGHHVPRKHNVAKFLKFHPGGSNTIKYFKNGDITEQLI 89
+KY+ +I + K S HH + +++ K+L+ HPGG ++ GD TE
Sbjct: 4 VKYYTLEEIQKH--KDSKSTWVILHH--KVYDLTKYLEEHPGGEEVLREQAGGDATENFE 59
Query: 90 KTHHSPSAYELLKDYRVSDDNPQE 113
HS A EL K Y + + +P +
Sbjct: 60 DVGHSTDARELSKTYIIGELHPDD 83
Score = 30.4 bits (67), Expect = 2.4, Method: Composition-based stats.
Identities = 15/46 (32%), Positives = 24/46 (52%), Gaps = 2/46 (4%)
Query: 6 LIEHKGQKHNVAKFLKFHPGGSNTIKYFKNGDITEQLIKTHHSPSA 51
++ HK +++ K+L+ HPGG ++ GD TE HS A
Sbjct: 24 ILHHK--VYDLTKYLEEHPGGEEVLREQAGGDATENFEDVGHSTDA 67
>pdb|3NER|A Chain A, Structure Of Human Type B Cytochrome B5
pdb|3NER|B Chain B, Structure Of Human Type B Cytochrome B5
Length = 92
Score = 39.7 bits (91), Expect = 0.003, Method: Composition-based stats.
Identities = 19/56 (33%), Positives = 28/56 (50%)
Query: 58 RKHNVAKFLKFHPGGSNTIKYFKNGDITEQLIKTHHSPSAYELLKDYRVSDDNPQE 113
R ++V +FL HPGG + D +E HS A E+LK Y + D +P +
Sbjct: 33 RVYDVTRFLNEHPGGEEVLLEQAGVDASESFEDVGHSSDAREMLKQYYIGDIHPSD 88
>pdb|1DO9|A Chain A, Solution Structure Of Oxidized Microsomal Rabbit
Cytochrome B5. Factors Determining The Heterogeneous
Binding Of The Heme
Length = 94
Score = 39.3 bits (90), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 42/79 (53%), Gaps = 4/79 (5%)
Query: 40 EQLIKTHHSPSAYG--HHVPRKHNVAKFLKFHPGGSNTIKYFKNGDITEQLIKTHHSPSA 97
E++ K +HS S + HH + +++ KFL+ HPGG ++ GD TE HS A
Sbjct: 10 EEIKKHNHSKSTWLILHH--KVYDLTKFLEEHPGGEEVLREQAGGDATENFEDVGHSTDA 67
Query: 98 YELLKDYRVSDDNPQEYIR 116
EL K + + + +P + +
Sbjct: 68 RELSKTFIIGELHPDDRSK 86
Score = 32.7 bits (73), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 19/37 (51%)
Query: 15 NVAKFLKFHPGGSNTIKYFKNGDITEQLIKTHHSPSA 51
++ KFL+ HPGG ++ GD TE HS A
Sbjct: 31 DLTKFLEEHPGGEEVLREQAGGDATENFEDVGHSTDA 67
>pdb|1BLV|A Chain A, Solution Structure Of Oxidized Rat Microsomal Cytochrome
B5 In The Presence Of 2 M Guanidinium Chloride:
Monitoring The Early Steps In Protein Unfolding
pdb|1AW3|A Chain A, The Solution Nmr Structure Of Oxidized Rat Microsomal
Cytochrome B5, Minimized Average Structure
pdb|1AXX|A Chain A, The Solution Structure Of Oxidized Rat Microsomal
Cytochrome B5, Nmr, 19 Structures
pdb|1B5A|A Chain A, Rat Ferrocytochrome B5 A Conformation, Nmr, 1 Structure
pdb|1B5B|A Chain A, Rat Ferrocytochrome B5 B Conformation, Nmr, 1 Structure
Length = 94
Score = 38.9 bits (89), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 28/53 (52%)
Query: 61 NVAKFLKFHPGGSNTIKYFKNGDITEQLIKTHHSPSAYELLKDYRVSDDNPQE 113
++ KFL+ HPGG ++ GD TE HS A EL K Y + + +P +
Sbjct: 31 DLTKFLEEHPGGEEVLREQAGGDATENFEDVGHSTDARELSKTYIIGELHPDD 83
Score = 32.7 bits (73), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 19/37 (51%)
Query: 15 NVAKFLKFHPGGSNTIKYFKNGDITEQLIKTHHSPSA 51
++ KFL+ HPGG ++ GD TE HS A
Sbjct: 31 DLTKFLEEHPGGEEVLREQAGGDATENFEDVGHSTDA 67
>pdb|2I96|A Chain A, Solution Structure Of The Oxidized Microsomal Human
Cytochrome B5
Length = 108
Score = 38.9 bits (89), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 41/79 (51%), Gaps = 8/79 (10%)
Query: 40 EQLIKTHHSPSAYG--HHVPRKHNVAKFLKFHPGGSNTIKYFKNGDITEQLIKTHHSPSA 97
E++ K +HS S + HH + +++ KFL+ HPGG ++ GD TE HS A
Sbjct: 15 EEIQKHNHSKSTWLILHH--KVYDLTKFLEEHPGGEEVLREQAGGDATENFEDVGHSTDA 72
Query: 98 YELLKDYRVS----DDNPQ 112
E+ K + + DD P+
Sbjct: 73 REMSKTFIIGELHPDDRPK 91
Score = 32.7 bits (73), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 19/37 (51%)
Query: 15 NVAKFLKFHPGGSNTIKYFKNGDITEQLIKTHHSPSA 51
++ KFL+ HPGG ++ GD TE HS A
Sbjct: 36 DLTKFLEEHPGGEEVLREQAGGDATENFEDVGHSTDA 72
>pdb|3OZZ|B Chain B, Structure Of A Cytochrome B5 Core-Swap Mutant
Length = 82
Score = 38.9 bits (89), Expect = 0.006, Method: Composition-based stats.
Identities = 22/84 (26%), Positives = 42/84 (50%), Gaps = 4/84 (4%)
Query: 30 IKYFKNGDITEQLIKTHHSPSAYGHHVPRKHNVAKFLKFHPGGSNTIKYFKNGDITEQLI 89
+KY+ E++ K +++ S + + +++ +FL HPGG + D TE
Sbjct: 2 VKYYT----LEEIQKHNNAKSTWMIIHYKVYDITRFLSEHPGGEEVLLEQAGADATESFE 57
Query: 90 KTHHSPSAYELLKDYRVSDDNPQE 113
HSP A E+LK + + + +P +
Sbjct: 58 DVGHSPDAREMLKTFIIGELHPDD 81
Score = 30.0 bits (66), Expect = 3.0, Method: Composition-based stats.
Identities = 13/38 (34%), Positives = 18/38 (47%)
Query: 14 HNVAKFLKFHPGGSNTIKYFKNGDITEQLIKTHHSPSA 51
+++ +FL HPGG + D TE HSP A
Sbjct: 28 YDITRFLSEHPGGEEVLLEQAGADATESFEDVGHSPDA 65
>pdb|1EHB|A Chain A, Crystal Structure Of Recombinant Trypsin-Solubilized
Fragment Of Cytochrome B5
pdb|1NX7|A Chain A, Solution Structure Of Oxidized Bovine Microsomal
Cytochrome B5
Length = 82
Score = 38.1 bits (87), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 29/54 (53%)
Query: 60 HNVAKFLKFHPGGSNTIKYFKNGDITEQLIKTHHSPSAYELLKDYRVSDDNPQE 113
+++ KFL+ HPGG ++ GD TE HS A EL K + + + +P +
Sbjct: 28 YDLTKFLEEHPGGEEVLREQAGGDATENFEDVGHSTDARELSKTFIIGELHPDD 81
Score = 32.7 bits (73), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 20/38 (52%)
Query: 14 HNVAKFLKFHPGGSNTIKYFKNGDITEQLIKTHHSPSA 51
+++ KFL+ HPGG ++ GD TE HS A
Sbjct: 28 YDLTKFLEEHPGGEEVLREQAGGDATENFEDVGHSTDA 65
>pdb|1LQX|A Chain A, Crystal Structure Of V45e Mutant Of Cytochrome B5
Length = 82
Score = 38.1 bits (87), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 28/53 (52%)
Query: 61 NVAKFLKFHPGGSNTIKYFKNGDITEQLIKTHHSPSAYELLKDYRVSDDNPQE 113
++ KFL+ HPGG ++ GD TE HS A EL K + + + +P +
Sbjct: 29 DLTKFLEEHPGGEEELREQAGGDATENFEDVGHSTDARELSKTFIIGELHPDD 81
Score = 32.7 bits (73), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 19/37 (51%)
Query: 15 NVAKFLKFHPGGSNTIKYFKNGDITEQLIKTHHSPSA 51
++ KFL+ HPGG ++ GD TE HS A
Sbjct: 29 DLTKFLEEHPGGEEELREQAGGDATENFEDVGHSTDA 65
>pdb|1CYO|A Chain A, Bovine Cytochrome B(5)
Length = 93
Score = 37.4 bits (85), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 28/53 (52%)
Query: 61 NVAKFLKFHPGGSNTIKYFKNGDITEQLIKTHHSPSAYELLKDYRVSDDNPQE 113
++ KFL+ HPGG ++ GD TE HS A EL K + + + +P +
Sbjct: 31 DLTKFLEEHPGGEEVLREQAGGDATENFEDVGHSTDARELSKTFIIGELHPDD 83
Score = 32.3 bits (72), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 19/37 (51%)
Query: 15 NVAKFLKFHPGGSNTIKYFKNGDITEQLIKTHHSPSA 51
++ KFL+ HPGG ++ GD TE HS A
Sbjct: 31 DLTKFLEEHPGGEEVLREQAGGDATENFEDVGHSTDA 67
>pdb|2IBJ|A Chain A, Structure Of House Fly Cytochrome B5
Length = 88
Score = 37.4 bits (85), Expect = 0.016, Method: Composition-based stats.
Identities = 22/82 (26%), Positives = 36/82 (43%), Gaps = 4/82 (4%)
Query: 27 SNTIKYFKNGDITEQLIKTHHSPSAYGHHVPRKHNVAKFLKFHPGGSNTIKYFKNGDITE 86
S +KYF ++ + K + + + ++V FL HPGG + D TE
Sbjct: 3 SEDVKYFTRAEVAKNNTKDKNWFIIHNN----VYDVTAFLNEHPGGEEVLIEQAGKDATE 58
Query: 87 QLIKTHHSPSAYELLKDYRVSD 108
HS A E++K Y+V +
Sbjct: 59 HFEDVGHSSDAREMMKQYKVGE 80
>pdb|1U9U|A Chain A, Crystal Structure Of F58y Mutant Of Cytochrome B5
Length = 82
Score = 37.4 bits (85), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 29/54 (53%)
Query: 60 HNVAKFLKFHPGGSNTIKYFKNGDITEQLIKTHHSPSAYELLKDYRVSDDNPQE 113
+++ KFL+ HPGG ++ GD TE HS A EL K + + + +P +
Sbjct: 28 YDLTKFLEEHPGGEEVLREQAGGDATENYEDVGHSTDARELSKTFIIGELHPDD 81
Score = 32.3 bits (72), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 20/38 (52%)
Query: 14 HNVAKFLKFHPGGSNTIKYFKNGDITEQLIKTHHSPSA 51
+++ KFL+ HPGG ++ GD TE HS A
Sbjct: 28 YDLTKFLEEHPGGEEVLREQAGGDATENYEDVGHSTDA 65
>pdb|1J0Q|A Chain A, Solution Structure Of Oxidized Bovine Microsomal
Cytochrome B5 Mutant V61h
Length = 82
Score = 37.0 bits (84), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 28/53 (52%)
Query: 61 NVAKFLKFHPGGSNTIKYFKNGDITEQLIKTHHSPSAYELLKDYRVSDDNPQE 113
++ KFL+ HPGG ++ GD TE HS A EL K + + + +P +
Sbjct: 29 DLTKFLEEHPGGEEVLREQAGGDATENFEDHGHSTDARELSKTFIIGELHPDD 81
Score = 32.0 bits (71), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 19/37 (51%)
Query: 15 NVAKFLKFHPGGSNTIKYFKNGDITEQLIKTHHSPSA 51
++ KFL+ HPGG ++ GD TE HS A
Sbjct: 29 DLTKFLEEHPGGEEVLREQAGGDATENFEDHGHSTDA 65
>pdb|1SH4|A Chain A, Solution Structure Of Oxidized Bovine Microsomal
Cytochrome B5 Mutant V45h
Length = 82
Score = 37.0 bits (84), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 28/53 (52%)
Query: 61 NVAKFLKFHPGGSNTIKYFKNGDITEQLIKTHHSPSAYELLKDYRVSDDNPQE 113
++ KFL+ HPGG ++ GD TE HS A EL K + + + +P +
Sbjct: 29 DLTKFLEEHPGGEEHLREQAGGDATENFEDVGHSTDARELSKTFIIGELHPDD 81
Score = 31.6 bits (70), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 19/37 (51%)
Query: 15 NVAKFLKFHPGGSNTIKYFKNGDITEQLIKTHHSPSA 51
++ KFL+ HPGG ++ GD TE HS A
Sbjct: 29 DLTKFLEEHPGGEEHLREQAGGDATENFEDVGHSTDA 65
>pdb|1ES1|A Chain A, Crystal Structure Of Val61his Mutant Of
Trypsin-Solubilized Fragment Of Cytochrome B5
Length = 82
Score = 37.0 bits (84), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 28/53 (52%)
Query: 61 NVAKFLKFHPGGSNTIKYFKNGDITEQLIKTHHSPSAYELLKDYRVSDDNPQE 113
++ KFL+ HPGG ++ GD TE HS A EL K + + + +P +
Sbjct: 29 DLTKFLEEHPGGEEVLREQAGGDATENFEDHGHSTDARELSKTFIIGELHPDD 81
Score = 31.6 bits (70), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 19/37 (51%)
Query: 15 NVAKFLKFHPGGSNTIKYFKNGDITEQLIKTHHSPSA 51
++ KFL+ HPGG ++ GD TE HS A
Sbjct: 29 DLTKFLEEHPGGEEVLREQAGGDATENFEDHGHSTDA 65
>pdb|1LR6|A Chain A, Crystal Structure Of V45y Mutant Of Cytochrome B5
Length = 82
Score = 37.0 bits (84), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 29/54 (53%)
Query: 60 HNVAKFLKFHPGGSNTIKYFKNGDITEQLIKTHHSPSAYELLKDYRVSDDNPQE 113
+++ KFL+ HPGG ++ GD TE HS A EL K + + + +P +
Sbjct: 28 YDLTKFLEEHPGGEEYLREQAGGDATENFEDVGHSTDARELSKTFIIGELHPDD 81
Score = 32.0 bits (71), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 20/38 (52%)
Query: 14 HNVAKFLKFHPGGSNTIKYFKNGDITEQLIKTHHSPSA 51
+++ KFL+ HPGG ++ GD TE HS A
Sbjct: 28 YDLTKFLEEHPGGEEYLREQAGGDATENFEDVGHSTDA 65
>pdb|1U9M|A Chain A, Crystal Structure Of F58w Mutant Of Cytochrome B5
pdb|1U9M|B Chain B, Crystal Structure Of F58w Mutant Of Cytochrome B5
pdb|1U9M|C Chain C, Crystal Structure Of F58w Mutant Of Cytochrome B5
pdb|1U9M|D Chain D, Crystal Structure Of F58w Mutant Of Cytochrome B5
pdb|1U9M|E Chain E, Crystal Structure Of F58w Mutant Of Cytochrome B5
pdb|1U9M|F Chain F, Crystal Structure Of F58w Mutant Of Cytochrome B5
Length = 82
Score = 37.0 bits (84), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 29/54 (53%)
Query: 60 HNVAKFLKFHPGGSNTIKYFKNGDITEQLIKTHHSPSAYELLKDYRVSDDNPQE 113
+++ KFL+ HPGG ++ GD TE HS A EL K + + + +P +
Sbjct: 28 YDLTKFLEEHPGGEEVLREQAGGDATENWEDVGHSTDARELSKTFIIGELHPDD 81
Score = 31.6 bits (70), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 20/38 (52%)
Query: 14 HNVAKFLKFHPGGSNTIKYFKNGDITEQLIKTHHSPSA 51
+++ KFL+ HPGG ++ GD TE HS A
Sbjct: 28 YDLTKFLEEHPGGEEVLREQAGGDATENWEDVGHSTDA 65
>pdb|1JEX|A Chain A, Solution Structure Of A67v Mutant Of Rat Ferro Cytochrome
B5
Length = 94
Score = 37.0 bits (84), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 27/53 (50%)
Query: 61 NVAKFLKFHPGGSNTIKYFKNGDITEQLIKTHHSPSAYELLKDYRVSDDNPQE 113
++ KFL+ HPGG ++ GD TE HS EL K Y + + +P +
Sbjct: 31 DLTKFLEEHPGGEEVLREQAGGDATENFEDVGHSTDVRELSKTYIIGELHPDD 83
Score = 30.8 bits (68), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 13/34 (38%), Positives = 18/34 (52%)
Query: 15 NVAKFLKFHPGGSNTIKYFKNGDITEQLIKTHHS 48
++ KFL+ HPGG ++ GD TE HS
Sbjct: 31 DLTKFLEEHPGGEEVLREQAGGDATENFEDVGHS 64
>pdb|1M20|A Chain A, Crystal Structure Of F35y Mutant Of Trypsin-Solubilized
Fragment Of Cytochrome B5
Length = 82
Score = 36.6 bits (83), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 29/54 (53%)
Query: 60 HNVAKFLKFHPGGSNTIKYFKNGDITEQLIKTHHSPSAYELLKDYRVSDDNPQE 113
+++ K+L+ HPGG ++ GD TE HS A EL K + + + +P +
Sbjct: 28 YDLTKYLEEHPGGEEVLREQAGGDATENFEDVGHSTDARELSKTFIIGELHPDD 81
Score = 31.6 bits (70), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 13/38 (34%), Positives = 20/38 (52%)
Query: 14 HNVAKFLKFHPGGSNTIKYFKNGDITEQLIKTHHSPSA 51
+++ K+L+ HPGG ++ GD TE HS A
Sbjct: 28 YDLTKYLEEHPGGEEVLREQAGGDATENFEDVGHSTDA 65
>pdb|1M2M|A Chain A, Crystal Structure Of E44aE48AE56AD60A MUTANT OF Cytochrome
B5
Length = 82
Score = 36.6 bits (83), Expect = 0.027, Method: Composition-based stats.
Identities = 23/84 (27%), Positives = 42/84 (50%), Gaps = 4/84 (4%)
Query: 30 IKYFKNGDITEQLIKTHHSPSAYGHHVPRKHNVAKFLKFHPGGSNTIKYFKNGDITEQLI 89
+KY+ E++ K ++S S + + +++ KFL+ HPGG ++ GD T
Sbjct: 2 VKYYT----LEEIQKHNNSKSTWLILHYKVYDLTKFLEEHPGGEAVLRAQAGGDATANFE 57
Query: 90 KTHHSPSAYELLKDYRVSDDNPQE 113
HS A EL K + + + +P +
Sbjct: 58 AVGHSTDARELSKTFIIGELHPDD 81
Score = 28.5 bits (62), Expect = 7.5, Method: Composition-based stats.
Identities = 13/38 (34%), Positives = 19/38 (50%)
Query: 14 HNVAKFLKFHPGGSNTIKYFKNGDITEQLIKTHHSPSA 51
+++ KFL+ HPGG ++ GD T HS A
Sbjct: 28 YDLTKFLEEHPGGEAVLRAQAGGDATANFEAVGHSTDA 65
>pdb|1M2I|A Chain A, Crystal Structure Of E44aE56A MUTANT OF CYTOCHROME B5
Length = 82
Score = 36.6 bits (83), Expect = 0.031, Method: Composition-based stats.
Identities = 23/84 (27%), Positives = 42/84 (50%), Gaps = 4/84 (4%)
Query: 30 IKYFKNGDITEQLIKTHHSPSAYGHHVPRKHNVAKFLKFHPGGSNTIKYFKNGDITEQLI 89
+KY+ E++ K ++S S + + +++ KFL+ HPGG ++ GD T
Sbjct: 2 VKYYT----LEEIQKHNNSKSTWLILHYKVYDLTKFLEEHPGGEAVLREQAGGDATANFE 57
Query: 90 KTHHSPSAYELLKDYRVSDDNPQE 113
HS A EL K + + + +P +
Sbjct: 58 DVGHSTDARELSKTFIIGELHPDD 81
Score = 28.5 bits (62), Expect = 8.2, Method: Composition-based stats.
Identities = 13/38 (34%), Positives = 19/38 (50%)
Query: 14 HNVAKFLKFHPGGSNTIKYFKNGDITEQLIKTHHSPSA 51
+++ KFL+ HPGG ++ GD T HS A
Sbjct: 28 YDLTKFLEEHPGGEAVLREQAGGDATANFEDVGHSTDA 65
>pdb|1F03|A Chain A, Solution Structure Of Oxidized Bovine Microsomal
Cytochrome B5 Mutant (E44a, E48a, E56a, D60a) And Its
Interaction With Cytochrome C
pdb|1F04|A Chain A, Solution Structure Of Oxidized Bovine Microsomal
Cytochrome B5 Mutant (E44a, E48a, E56a, D60a) And Its
Interaction With Cytochrome C
Length = 82
Score = 36.6 bits (83), Expect = 0.031, Method: Composition-based stats.
Identities = 23/84 (27%), Positives = 42/84 (50%), Gaps = 4/84 (4%)
Query: 30 IKYFKNGDITEQLIKTHHSPSAYGHHVPRKHNVAKFLKFHPGGSNTIKYFKNGDITEQLI 89
+KY+ E++ K ++S S + + +++ KFL+ HPGG ++ GD T
Sbjct: 2 VKYYT----LEEIQKHNNSKSTWLILHYKVYDLTKFLEEHPGGEAVLRAQAGGDATANFE 57
Query: 90 KTHHSPSAYELLKDYRVSDDNPQE 113
HS A EL K + + + +P +
Sbjct: 58 AVGHSTDARELSKTFIIGELHPDD 81
Score = 28.5 bits (62), Expect = 8.3, Method: Composition-based stats.
Identities = 13/38 (34%), Positives = 19/38 (50%)
Query: 14 HNVAKFLKFHPGGSNTIKYFKNGDITEQLIKTHHSPSA 51
+++ KFL+ HPGG ++ GD T HS A
Sbjct: 28 YDLTKFLEEHPGGEAVLRAQAGGDATANFEAVGHSTDA 65
>pdb|1I5U|A Chain A, Solution Structure Of Cytochrome B5 Triple Mutant
(E48aE56AD60A)
Length = 82
Score = 36.2 bits (82), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 28/54 (51%)
Query: 60 HNVAKFLKFHPGGSNTIKYFKNGDITEQLIKTHHSPSAYELLKDYRVSDDNPQE 113
+++ KFL+ HPGG ++ GD T HS A EL K + + + +P +
Sbjct: 28 YDLTKFLEEHPGGEEVLRAQAGGDATANFEAVGHSTDARELSKTFIIGELHPDD 81
Score = 30.0 bits (66), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 13/38 (34%), Positives = 19/38 (50%)
Query: 14 HNVAKFLKFHPGGSNTIKYFKNGDITEQLIKTHHSPSA 51
+++ KFL+ HPGG ++ GD T HS A
Sbjct: 28 YDLTKFLEEHPGGEEVLRAQAGGDATANFEAVGHSTDA 65
>pdb|1M59|A Chain A, Crystal Structure Of P40v Mutant Of Trypsin-Solubilized
Fragment Of Cytochrome B5
Length = 82
Score = 35.8 bits (81), Expect = 0.056, Method: Composition-based stats.
Identities = 23/84 (27%), Positives = 42/84 (50%), Gaps = 4/84 (4%)
Query: 30 IKYFKNGDITEQLIKTHHSPSAYGHHVPRKHNVAKFLKFHPGGSNTIKYFKNGDITEQLI 89
+KY+ E++ K ++S S + + +++ KFL+ H GG ++ GD TE
Sbjct: 2 VKYYT----LEEIQKHNNSKSTWLILHYKVYDLTKFLEEHVGGEEVLREQAGGDATENFE 57
Query: 90 KTHHSPSAYELLKDYRVSDDNPQE 113
HS A EL K + + + +P +
Sbjct: 58 DVGHSTDARELSKTFIIGELHPDD 81
>pdb|3R19|A Chain A, Chicken Sulfite Oxidase Triple Mutant With Altered
Activity And Substrate Affinity
Length = 466
Score = 35.4 bits (80), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 35/79 (44%), Gaps = 4/79 (5%)
Query: 39 TEQLIKTHHSPS--AYGHHVPRKHNVAKFLKFHPGGSNTIKYFKNGDITE--QLIKTHHS 94
T + + H SP + H +V F++ HPGG + I G + L H
Sbjct: 8 TREEVGRHRSPEERVWVTHGTDVFDVTDFVELHPGGPDKILLAAGGALEPFWALYAVHGE 67
Query: 95 PSAYELLKDYRVSDDNPQE 113
P ELL+ Y+V + +P E
Sbjct: 68 PHVLELLQQYKVGELSPDE 86
>pdb|3R18|A Chain A, Chicken Sulfite Oxidase Double Mutant With Altered
Activity And Substrate Affinity
Length = 466
Score = 35.4 bits (80), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 35/79 (44%), Gaps = 4/79 (5%)
Query: 39 TEQLIKTHHSPS--AYGHHVPRKHNVAKFLKFHPGGSNTIKYFKNGDITE--QLIKTHHS 94
T + + H SP + H +V F++ HPGG + I G + L H
Sbjct: 8 TREEVGRHRSPEERVWVTHGTDVFDVTDFVELHPGGPDKILLAAGGALEPFWALYAVHGE 67
Query: 95 PSAYELLKDYRVSDDNPQE 113
P ELL+ Y+V + +P E
Sbjct: 68 PHVLELLQQYKVGELSPDE 86
>pdb|3HC2|A Chain A, Crystal Structure Of Chicken Sulfite Oxidase Mutant Tyr
322 Phe
Length = 466
Score = 35.4 bits (80), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 35/79 (44%), Gaps = 4/79 (5%)
Query: 39 TEQLIKTHHSPS--AYGHHVPRKHNVAKFLKFHPGGSNTIKYFKNGDITE--QLIKTHHS 94
T + + H SP + H +V F++ HPGG + I G + L H
Sbjct: 8 TREEVGRHRSPEERVWVTHGTDVFDVTDFVELHPGGPDKILLAAGGALEPFWALYAVHGE 67
Query: 95 PSAYELLKDYRVSDDNPQE 113
P ELL+ Y+V + +P E
Sbjct: 68 PHVLELLQQYKVGELSPDE 86
>pdb|1SOX|A Chain A, Sulfite Oxidase From Chicken Liver
pdb|1SOX|B Chain B, Sulfite Oxidase From Chicken Liver
Length = 466
Score = 35.4 bits (80), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 35/79 (44%), Gaps = 4/79 (5%)
Query: 39 TEQLIKTHHSPS--AYGHHVPRKHNVAKFLKFHPGGSNTIKYFKNGDITE--QLIKTHHS 94
T + + H SP + H +V F++ HPGG + I G + L H
Sbjct: 8 TREEVGRHRSPEERVWVTHGTDVFDVTDFVELHPGGPDKILLAAGGALEPFWALYAVHGE 67
Query: 95 PSAYELLKDYRVSDDNPQE 113
P ELL+ Y+V + +P E
Sbjct: 68 PHVLELLQQYKVGELSPDE 86
>pdb|3HBG|A Chain A, Structure Of Recombinant Chicken Liver Sulfite Oxidase
Mutant C185s
pdb|3HBP|A Chain A, The Crystal Structure Of C185s Mutant Of Recombinant
Sulfite Oxidase With Bound Substrate, Sulfite, At The
Active Site
Length = 466
Score = 35.4 bits (80), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 35/79 (44%), Gaps = 4/79 (5%)
Query: 39 TEQLIKTHHSPS--AYGHHVPRKHNVAKFLKFHPGGSNTIKYFKNGDITE--QLIKTHHS 94
T + + H SP + H +V F++ HPGG + I G + L H
Sbjct: 8 TREEVGRHRSPEERVWVTHGTDVFDVTDFVELHPGGPDKILLAAGGALEPFWALYAVHGE 67
Query: 95 PSAYELLKDYRVSDDNPQE 113
P ELL+ Y+V + +P E
Sbjct: 68 PHVLELLQQYKVGELSPDE 86
>pdb|3HBQ|A Chain A, Structure Of Recombinant Chicken Liver Sulfite Oxidase
Mutant Cys 185 Ala
Length = 466
Score = 35.4 bits (80), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 35/79 (44%), Gaps = 4/79 (5%)
Query: 39 TEQLIKTHHSPS--AYGHHVPRKHNVAKFLKFHPGGSNTIKYFKNGDITE--QLIKTHHS 94
T + + H SP + H +V F++ HPGG + I G + L H
Sbjct: 8 TREEVGRHRSPEERVWVTHGTDVFDVTDFVELHPGGPDKILLAAGGALEPFWALYAVHGE 67
Query: 95 PSAYELLKDYRVSDDNPQE 113
P ELL+ Y+V + +P E
Sbjct: 68 PHVLELLQQYKVGELSPDE 86
>pdb|3V3J|A Chain A, Kinetic And Structural Studies Of Thermostabilized Mutants
Of Hca Ii
Length = 260
Score = 31.2 bits (69), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 20/74 (27%), Positives = 39/74 (52%), Gaps = 7/74 (9%)
Query: 357 LMYLGYSLATSLFIPTWNAPLVLAGVITGYLTYDLIHFYLHYGSPHEG---SYLYNMKRY 413
++ LG++ F + + ++ G + G TY LI F+ H+GS H+G + + K+Y
Sbjct: 59 ILNLGHAFQVE-FDDSQDKAVLKGGPLDG--TYRLIQFHFHWGS-HDGQGSEHTVDKKKY 114
Query: 414 HNQHHFAHYESGFG 427
+ H H+ + +G
Sbjct: 115 AAELHLVHWNTKYG 128
>pdb|3V3H|B Chain B, Kinetic And Structural Studies Of Thermostabilized Mutants
Of Hca Ii
Length = 260
Score = 30.8 bits (68), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 20/74 (27%), Positives = 39/74 (52%), Gaps = 7/74 (9%)
Query: 357 LMYLGYSLATSLFIPTWNAPLVLAGVITGYLTYDLIHFYLHYGSPHEG---SYLYNMKRY 413
++ LG++ F + + ++ G + G TY LI F+ H+GS H+G + + K+Y
Sbjct: 59 ILNLGHAFNVE-FDDSQDKAVLKGGPLDG--TYRLIQFHFHWGS-HDGQGSEHTVDKKKY 114
Query: 414 HNQHHFAHYESGFG 427
+ H H+ + +G
Sbjct: 115 AAELHLVHWNTKYG 128
>pdb|12CA|A Chain A, Altering The Mouth Of A Hydrophobic Pocket. Structure And
Kinetics Of Human Carbonic Anhydrase Ii Mutants At
Residue Val-121
Length = 260
Score = 30.8 bits (68), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 41/84 (48%), Gaps = 16/84 (19%)
Query: 358 MYLGYSLATSL------------FIPTWNAPLVLAGVITGYLTYDLIHFYLHYGS-PHEG 404
+ + Y ATSL F + + ++ G + G TY LI F+ H+GS +G
Sbjct: 47 LSVSYDQATSLRILNNGHAFNVEFDDSQDKAVLKGGPLDG--TYRLIQFHFHWGSLDGQG 104
Query: 405 S-YLYNMKRYHNQHHFAHYESGFG 427
S + + K+Y + H AH+ + +G
Sbjct: 105 SEHTVDKKKYAAELHLAHWNTKYG 128
>pdb|1ZH9|A Chain A, Carbonic Anhydrase Ii In Complex With N-4-methyl-1-
Piperazinyl-n'-(p-sulfonamide)phenylthiourea As
Sulfonamide Inhibitor
Length = 259
Score = 30.8 bits (68), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 41/84 (48%), Gaps = 16/84 (19%)
Query: 358 MYLGYSLATSL------------FIPTWNAPLVLAGVITGYLTYDLIHFYLHYGS-PHEG 404
+ + Y ATSL F + +A ++ G + G TY LI F+ H+GS +G
Sbjct: 46 LSVSYDQATSLRILNNGHAFNVEFDDSQDAKVLKGGPLDG--TYRLIQFHFHWGSLDGQG 103
Query: 405 S-YLYNMKRYHNQHHFAHYESGFG 427
S + + K+Y + H H+ + +G
Sbjct: 104 SEHTVDKKKYAAELHLVHWNTKYG 127
>pdb|3V3F|A Chain A, Kinetic And Structural Studies Of Thermostabilized Mutants
Of Hca Ii
Length = 260
Score = 30.4 bits (67), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 23/85 (27%), Positives = 40/85 (47%), Gaps = 18/85 (21%)
Query: 358 MYLGYSLATSL------------FIPTWNAPLVLAGVITGYLTYDLIHFYLHYGSPHEG- 404
+ + Y ATSL F + + ++ G + G TY LI F+ H+GS H+G
Sbjct: 47 LSVSYDQATSLRILNNGHAFNVEFDDSQDKAVLKGGPLDG--TYRLIQFHFHWGS-HDGQ 103
Query: 405 --SYLYNMKRYHNQHHFAHYESGFG 427
+ + K+Y + H H+ + +G
Sbjct: 104 GSEHTVDKKKYAAELHLVHWNTKYG 128
>pdb|3V3I|B Chain B, Kinetic And Structural Studies Of Thermostabilized Mutants
Of Hca Ii
Length = 260
Score = 30.4 bits (67), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 23/85 (27%), Positives = 40/85 (47%), Gaps = 18/85 (21%)
Query: 358 MYLGYSLATSL------------FIPTWNAPLVLAGVITGYLTYDLIHFYLHYGSPHEG- 404
+ + Y ATSL F + + ++ G + G TY LI F+ H+GS H+G
Sbjct: 47 LSVSYDQATSLRILNNGHAFQVEFDDSQDKAVLKGGPLDG--TYRLIQFHFHWGS-HDGQ 103
Query: 405 --SYLYNMKRYHNQHHFAHYESGFG 427
+ + K+Y + H H+ + +G
Sbjct: 104 GSEHTVDKKKYAAELHLVHWNTKYG 128
>pdb|3V3G|B Chain B, Kinetic And Structural Studies Of Thermostabilized Mutants
Of Hca Ii
Length = 260
Score = 30.4 bits (67), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 23/85 (27%), Positives = 40/85 (47%), Gaps = 18/85 (21%)
Query: 358 MYLGYSLATSL------------FIPTWNAPLVLAGVITGYLTYDLIHFYLHYGSPHEG- 404
+ + Y ATSL F + + ++ G + G TY LI F+ H+GS H+G
Sbjct: 47 LSVSYDQATSLRILNNGHAFNVEFDDSQDKAVLKGGPLDG--TYRLIQFHFHWGS-HDGQ 103
Query: 405 --SYLYNMKRYHNQHHFAHYESGFG 427
+ + K+Y + H H+ + +G
Sbjct: 104 GSEHTVDKKKYAAELHLVHWNTKYG 128
>pdb|1ZSA|A Chain A, Carbonic Anhydrase Ii Mutant E117q, Apo Form
pdb|1ZSB|A Chain A, Carbonic Anhydrase Ii Mutant E117q, Transition State
Analogue Acetazolamide
pdb|1ZSC|A Chain A, Carbonic Anhydrase Ii Mutant E117q, Holo Form
Length = 259
Score = 30.4 bits (67), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 40/84 (47%), Gaps = 16/84 (19%)
Query: 358 MYLGYSLATSL------------FIPTWNAPLVLAGVITGYLTYDLIHFYLHYGS-PHEG 404
+ + Y ATSL F + + ++ G + G TY LI F+ H+GS +G
Sbjct: 46 LSVSYDQATSLRILNNGHAFNVEFDDSQDKAVLKGGPLDG--TYRLIQFHFHWGSLDGQG 103
Query: 405 S-YLYNMKRYHNQHHFAHYESGFG 427
S + + K+Y Q H H+ + +G
Sbjct: 104 SEHTVDKKKYAAQLHLVHWNTKYG 127
>pdb|3KS0|A Chain A, Crystal Structure Of The Heme Domain Of Flavocytochrome
B2 In Complex With Fab B2b4
pdb|3KS0|B Chain B, Crystal Structure Of The Heme Domain Of Flavocytochrome
B2 In Complex With Fab B2b4
Length = 95
Score = 30.0 bits (66), Expect = 3.0, Method: Composition-based stats.
Identities = 15/50 (30%), Positives = 28/50 (56%), Gaps = 2/50 (4%)
Query: 11 GQKHNVAKFLKFHPGGSNTIKYFKNGDITEQLIKTHHSPSAYGHHV-PRK 59
G +++ +FL HPGG + IK+ D+T + + H+P+ ++ P K
Sbjct: 26 GYVYDLTRFLPNHPGGQDVIKFNAGKDVT-AIFEPLHAPNVIDKYIAPEK 74
Score = 28.9 bits (63), Expect = 6.5, Method: Composition-based stats.
Identities = 12/37 (32%), Positives = 23/37 (62%), Gaps = 1/37 (2%)
Query: 60 HNVAKFLKFHPGGSNTIKYFKNGDITEQLIKTHHSPS 96
+++ +FL HPGG + IK+ D+T + + H+P+
Sbjct: 29 YDLTRFLPNHPGGQDVIKFNAGKDVT-AIFEPLHAPN 64
>pdb|1NE7|A Chain A, Human Glucosamine-6-Phosphate Deaminase Isomerase At 1.75
A Resolution Complexed With
N-Acetyl-Glucosamine-6-Phosphate And
2-Deoxy-2-Amino-Glucitol-6-Phosphate
pdb|1NE7|B Chain B, Human Glucosamine-6-Phosphate Deaminase Isomerase At 1.75
A Resolution Complexed With
N-Acetyl-Glucosamine-6-Phosphate And
2-Deoxy-2-Amino-Glucitol-6-Phosphate
pdb|1NE7|C Chain C, Human Glucosamine-6-Phosphate Deaminase Isomerase At 1.75
A Resolution Complexed With
N-Acetyl-Glucosamine-6-Phosphate And
2-Deoxy-2-Amino-Glucitol-6-Phosphate
pdb|1NE7|D Chain D, Human Glucosamine-6-Phosphate Deaminase Isomerase At 1.75
A Resolution Complexed With
N-Acetyl-Glucosamine-6-Phosphate And
2-Deoxy-2-Amino-Glucitol-6-Phosphate
pdb|1NE7|E Chain E, Human Glucosamine-6-Phosphate Deaminase Isomerase At 1.75
A Resolution Complexed With
N-Acetyl-Glucosamine-6-Phosphate And
2-Deoxy-2-Amino-Glucitol-6-Phosphate
pdb|1NE7|F Chain F, Human Glucosamine-6-Phosphate Deaminase Isomerase At 1.75
A Resolution Complexed With
N-Acetyl-Glucosamine-6-Phosphate And
2-Deoxy-2-Amino-Glucitol-6-Phosphate
Length = 289
Score = 29.6 bits (65), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 44/186 (23%), Positives = 70/186 (37%), Gaps = 40/186 (21%)
Query: 30 IKYFKNGDITEQLIKTHHSPSAYGHHVPRKH----------NVAKFLKFHPGGSNTIKYF 79
I+Y+KNGD++ + +KT + G +PR H N K + HP ++ +
Sbjct: 53 IEYYKNGDLSFKYVKTFNMDEYVG--LPRDHPESYHSFMWNNFFKHIDIHPENTHIL--- 107
Query: 80 KNGDITEQLIKTHHSPSAYELLKDYRVSDDNPQEYIREEGDIEHLVDWTKP----MFWQV 135
+G+ D + D +E I+ G IE V P F +
Sbjct: 108 -DGNAV-----------------DLQAECDAFEEKIKAAGGIELFVGGIGPDGHIAFNEP 149
Query: 136 G-SLGPRYREWVLA--PVDRNLRLFHSDFIEKLTRTPVYLVPSVWVPITLLLLYIGYGRV 192
G SL R R LA + N R F + + T V +V +++L G +
Sbjct: 150 GSSLVSRTRVKTLAMDTILANARFFDGELTKVPTMALTVGVGTVMDAREVMILITGAHKA 209
Query: 193 SHFYMA 198
Y A
Sbjct: 210 FALYKA 215
>pdb|2OZ0|A Chain A, Mechanistic And Structural Studies Of H373q
Flavocytochrome B2: Effects Of Mutating The Active Site
Base
pdb|2OZ0|B Chain B, Mechanistic And Structural Studies Of H373q
Flavocytochrome B2: Effects Of Mutating The Active Site
Base
Length = 511
Score = 29.3 bits (64), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 14/48 (29%), Positives = 27/48 (56%), Gaps = 2/48 (4%)
Query: 14 HNVAKFLKFHPGGSNTIKYFKNGDITEQLIKTHHSPSAYGHHV-PRKH 60
+++ +FL HPGG + IK+ D+T + + H+P+ ++ P K
Sbjct: 34 YDLTRFLPNHPGGQDVIKFNAGKDVT-AIFEPLHAPNVIDKYIAPEKK 80
Score = 28.9 bits (63), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 12/40 (30%), Positives = 24/40 (60%), Gaps = 1/40 (2%)
Query: 60 HNVAKFLKFHPGGSNTIKYFKNGDITEQLIKTHHSPSAYE 99
+++ +FL HPGG + IK+ D+T + + H+P+ +
Sbjct: 34 YDLTRFLPNHPGGQDVIKFNAGKDVT-AIFEPLHAPNVID 72
>pdb|1V9I|C Chain C, Crystal Structure Analysis Of The Site Specific Mutant
(Q253c) Of Bovine Carbonic Anhydrase Ii
Length = 261
Score = 29.3 bits (64), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 15/49 (30%), Positives = 27/49 (55%), Gaps = 4/49 (8%)
Query: 381 GVITGYLTYDLIHFYLHYGSPHE--GSYLYNMKRYHNQHHFAHYESGFG 427
G +TG TY L+ F+ H+GS + + + K+Y + H H+ + +G
Sbjct: 83 GPLTG--TYRLVQFHFHWGSSDDQGSEHTVDRKKYAAELHLVHWNTKYG 129
>pdb|3LF5|A Chain A, Structure Of Human Nadh Cytochrome B5 Oxidoreductase
(Ncb5or) B5 Domain To 1.25a Resolution
pdb|3LF5|B Chain B, Structure Of Human Nadh Cytochrome B5 Oxidoreductase
(Ncb5or) B5 Domain To 1.25a Resolution
Length = 88
Score = 29.3 bits (64), Expect = 4.8, Method: Composition-based stats.
Identities = 12/44 (27%), Positives = 24/44 (54%)
Query: 60 HNVAKFLKFHPGGSNTIKYFKNGDITEQLIKTHHSPSAYELLKD 103
+NV+ ++++HPGG + + D TE + H + +LK+
Sbjct: 31 YNVSPYMEYHPGGEDELMRAAGSDGTELFDQVHRWVNYESMLKE 74
Score = 28.9 bits (63), Expect = 6.3, Method: Composition-based stats.
Identities = 11/37 (29%), Positives = 21/37 (56%)
Query: 10 KGQKHNVAKFLKFHPGGSNTIKYFKNGDITEQLIKTH 46
+G +NV+ ++++HPGG + + D TE + H
Sbjct: 27 RGFVYNVSPYMEYHPGGEDELMRAAGSDGTELFDQVH 63
>pdb|1FCB|A Chain A, Molecular Structure Of Flavocytochrome B2 At 2.4
Angstroms Resolution
pdb|1FCB|B Chain B, Molecular Structure Of Flavocytochrome B2 At 2.4
Angstroms Resolution
pdb|1KBI|A Chain A, Crystallographic Study Of The Recombinant Flavin-Binding
Domain Of Baker's Yeast Flavocytochrome B2: Comparison
With The Intact Wild- Type Enzyme
pdb|1KBI|B Chain B, Crystallographic Study Of The Recombinant Flavin-Binding
Domain Of Baker's Yeast Flavocytochrome B2: Comparison
With The Intact Wild- Type Enzyme
Length = 511
Score = 29.3 bits (64), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 14/48 (29%), Positives = 27/48 (56%), Gaps = 2/48 (4%)
Query: 14 HNVAKFLKFHPGGSNTIKYFKNGDITEQLIKTHHSPSAYGHHV-PRKH 60
+++ +FL HPGG + IK+ D+T + + H+P+ ++ P K
Sbjct: 34 YDLTRFLPNHPGGQDVIKFNAGKDVT-AIFEPLHAPNVIDKYIAPEKK 80
Score = 28.5 bits (62), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 12/40 (30%), Positives = 24/40 (60%), Gaps = 1/40 (2%)
Query: 60 HNVAKFLKFHPGGSNTIKYFKNGDITEQLIKTHHSPSAYE 99
+++ +FL HPGG + IK+ D+T + + H+P+ +
Sbjct: 34 YDLTRFLPNHPGGQDVIKFNAGKDVT-AIFEPLHAPNVID 72
>pdb|1SZE|A Chain A, L230a Mutant Flavocytochrome B2 With Benzoylformate
pdb|1SZE|B Chain B, L230a Mutant Flavocytochrome B2 With Benzoylformate
Length = 511
Score = 29.3 bits (64), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 14/48 (29%), Positives = 27/48 (56%), Gaps = 2/48 (4%)
Query: 14 HNVAKFLKFHPGGSNTIKYFKNGDITEQLIKTHHSPSAYGHHV-PRKH 60
+++ +FL HPGG + IK+ D+T + + H+P+ ++ P K
Sbjct: 34 YDLTRFLPNHPGGQDVIKFNAGKDVT-AIFEPLHAPNVIDKYIAPEKK 80
Score = 28.5 bits (62), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 12/40 (30%), Positives = 24/40 (60%), Gaps = 1/40 (2%)
Query: 60 HNVAKFLKFHPGGSNTIKYFKNGDITEQLIKTHHSPSAYE 99
+++ +FL HPGG + IK+ D+T + + H+P+ +
Sbjct: 34 YDLTRFLPNHPGGQDVIKFNAGKDVT-AIFEPLHAPNVID 72
>pdb|1LTD|A Chain A, The 2.6 Angstroms Refined Structure Of The Escherichia
Coli Recombinant Saccharomyces Cerevisiae
Flavocytochrome B2-Sulphite Complex
pdb|1LTD|B Chain B, The 2.6 Angstroms Refined Structure Of The Escherichia
Coli Recombinant Saccharomyces Cerevisiae
Flavocytochrome B2-Sulphite Complex
Length = 506
Score = 29.3 bits (64), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 14/48 (29%), Positives = 27/48 (56%), Gaps = 2/48 (4%)
Query: 14 HNVAKFLKFHPGGSNTIKYFKNGDITEQLIKTHHSPSAYGHHV-PRKH 60
+++ +FL HPGG + IK+ D+T + + H+P+ ++ P K
Sbjct: 29 YDLTRFLPNHPGGQDVIKFNAGKDVT-AIFEPLHAPNVIDKYIAPEKK 75
Score = 28.5 bits (62), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 12/40 (30%), Positives = 24/40 (60%), Gaps = 1/40 (2%)
Query: 60 HNVAKFLKFHPGGSNTIKYFKNGDITEQLIKTHHSPSAYE 99
+++ +FL HPGG + IK+ D+T + + H+P+ +
Sbjct: 29 YDLTRFLPNHPGGQDVIKFNAGKDVT-AIFEPLHAPNVID 67
>pdb|1LDC|A Chain A, X-Ray Structure Of Two Complexes Of The Y143f
Flavocytochrome B2 Mutant Crystallized In The Presence
Of Lactate Or Phenyl-Lactate
pdb|1LDC|B Chain B, X-Ray Structure Of Two Complexes Of The Y143f
Flavocytochrome B2 Mutant Crystallized In The Presence
Of Lactate Or Phenyl-Lactate
pdb|1LCO|A Chain A, X-Ray Structure Of Two Complexes Of The Y143f
Flavocytochrome B2 Mutant Crystallized In The Presence
Of Lactate Or Phenyl-Lactate
pdb|1LCO|B Chain B, X-Ray Structure Of Two Complexes Of The Y143f
Flavocytochrome B2 Mutant Crystallized In The Presence
Of Lactate Or Phenyl-Lactate
Length = 511
Score = 29.3 bits (64), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 14/48 (29%), Positives = 27/48 (56%), Gaps = 2/48 (4%)
Query: 14 HNVAKFLKFHPGGSNTIKYFKNGDITEQLIKTHHSPSAYGHHV-PRKH 60
+++ +FL HPGG + IK+ D+T + + H+P+ ++ P K
Sbjct: 34 YDLTRFLPNHPGGQDVIKFNAGKDVT-AIFEPLHAPNVIDKYIAPEKK 80
Score = 28.5 bits (62), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 12/40 (30%), Positives = 24/40 (60%), Gaps = 1/40 (2%)
Query: 60 HNVAKFLKFHPGGSNTIKYFKNGDITEQLIKTHHSPSAYE 99
+++ +FL HPGG + IK+ D+T + + H+P+ +
Sbjct: 34 YDLTRFLPNHPGGQDVIKFNAGKDVT-AIFEPLHAPNVID 72
>pdb|1SZF|A Chain A, A198g:l230a Mutant Flavocytochrome B2 With Pyruvate
Bound
pdb|1SZF|B Chain B, A198g:l230a Mutant Flavocytochrome B2 With Pyruvate
Bound
pdb|1SZG|A Chain A, A198g:l230a Flavocytochrome B2 With Sulfite Bound
pdb|1SZG|B Chain B, A198g:l230a Flavocytochrome B2 With Sulfite Bound
Length = 511
Score = 29.3 bits (64), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 14/48 (29%), Positives = 27/48 (56%), Gaps = 2/48 (4%)
Query: 14 HNVAKFLKFHPGGSNTIKYFKNGDITEQLIKTHHSPSAYGHHV-PRKH 60
+++ +FL HPGG + IK+ D+T + + H+P+ ++ P K
Sbjct: 34 YDLTRFLPNHPGGQDVIKFNAGKDVT-AIFEPLHAPNVIDKYIAPEKK 80
Score = 28.5 bits (62), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 12/40 (30%), Positives = 24/40 (60%), Gaps = 1/40 (2%)
Query: 60 HNVAKFLKFHPGGSNTIKYFKNGDITEQLIKTHHSPSAYE 99
+++ +FL HPGG + IK+ D+T + + H+P+ +
Sbjct: 34 YDLTRFLPNHPGGQDVIKFNAGKDVT-AIFEPLHAPNVID 72
>pdb|1V9E|A Chain A, Crystal Structure Analysis Of Bovine Carbonic Anhydrase Ii
pdb|1V9E|B Chain B, Crystal Structure Analysis Of Bovine Carbonic Anhydrase Ii
Length = 259
Score = 28.9 bits (63), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 15/49 (30%), Positives = 27/49 (55%), Gaps = 4/49 (8%)
Query: 381 GVITGYLTYDLIHFYLHYGSPHE--GSYLYNMKRYHNQHHFAHYESGFG 427
G +TG TY L+ F+ H+GS + + + K+Y + H H+ + +G
Sbjct: 81 GPLTG--TYRLVQFHFHWGSSDDQGSEHTVDRKKYAAELHLVHWNTKYG 127
>pdb|1CNJ|A Chain A, X-Ray Crystallographic Studies Of Engineered Hydrogen Bond
Networks In A Protein-Zinc Binding Site
Length = 259
Score = 28.9 bits (63), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 41/84 (48%), Gaps = 16/84 (19%)
Query: 358 MYLGYSLATSL------------FIPTWNAPLVLAGVITGYLTYDLIHFYLHYGS-PHEG 404
+ + Y ATSL F + + ++ G + G TY LI+F+ H+GS +G
Sbjct: 46 LSVSYDQATSLRILNNGHAFNVEFDDSQDKAVLKGGPLDG--TYRLINFHFHWGSLDGQG 103
Query: 405 S-YLYNMKRYHNQHHFAHYESGFG 427
S + + K+Y + H H+ + +G
Sbjct: 104 SEHTVDKKKYAAELHLVHWNTKYG 127
>pdb|3DA2|A Chain A, X-Ray Structure Of Human Carbonic Anhydrase 13 In Complex
With Inhibitor
pdb|3DA2|B Chain B, X-Ray Structure Of Human Carbonic Anhydrase 13 In Complex
With Inhibitor
Length = 262
Score = 28.5 bits (62), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 37/80 (46%), Gaps = 5/80 (6%)
Query: 347 LLFPPVPAGILMYLGYSLATSLFIPTWNAPLVLAGVITGYLTYDLIHFYLHYGSP--HEG 404
+ + P A I+ G+S F T N ++ G +TG +Y L +LH+GS H
Sbjct: 51 IKYDPSSAKIISNSGHSFNVD-FDDTENKSVLRGGPLTG--SYRLRQVHLHWGSADDHGS 107
Query: 405 SYLYNMKRYHNQHHFAHYES 424
++ + Y + H H+ S
Sbjct: 108 EHIVDGVSYAAELHVVHWNS 127
>pdb|3CZV|A Chain A, Crystal Structure Of The Human Carbonic Anhydrase Xiii In
Complex With Acetazolamide
pdb|3CZV|B Chain B, Crystal Structure Of The Human Carbonic Anhydrase Xiii In
Complex With Acetazolamide
pdb|3D0N|A Chain A, Crystal Structure Of Human Carbonic Anhydrase Xiii
pdb|3D0N|B Chain B, Crystal Structure Of Human Carbonic Anhydrase Xiii
Length = 264
Score = 28.1 bits (61), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 37/80 (46%), Gaps = 5/80 (6%)
Query: 347 LLFPPVPAGILMYLGYSLATSLFIPTWNAPLVLAGVITGYLTYDLIHFYLHYGSP--HEG 404
+ + P A I+ G+S F T N ++ G +TG +Y L +LH+GS H
Sbjct: 52 IKYDPSSAKIISNSGHSFNVD-FDDTENKSVLRGGPLTG--SYRLRQVHLHWGSADDHGS 108
Query: 405 SYLYNMKRYHNQHHFAHYES 424
++ + Y + H H+ S
Sbjct: 109 EHIVDGVSYAAELHVVHWNS 128
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.326 0.142 0.488
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,539,082
Number of Sequences: 62578
Number of extensions: 701941
Number of successful extensions: 1902
Number of sequences better than 100.0: 68
Number of HSP's better than 100.0 without gapping: 43
Number of HSP's successfully gapped in prelim test: 25
Number of HSP's that attempted gapping in prelim test: 1801
Number of HSP's gapped (non-prelim): 122
length of query: 452
length of database: 14,973,337
effective HSP length: 102
effective length of query: 350
effective length of database: 8,590,381
effective search space: 3006633350
effective search space used: 3006633350
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 53 (25.0 bits)