Query psy2044
Match_columns 452
No_of_seqs 340 out of 1996
Neff 6.4
Searched_HMMs 46136
Date Fri Aug 16 22:49:23 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy2044.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/2044hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0539|consensus 100.0 1.2E-66 2.5E-71 479.8 13.0 235 120-448 3-239 (240)
2 PLN02434 fatty acid hydroxylas 100.0 1.5E-65 3.2E-70 492.1 15.4 230 121-448 4-235 (237)
3 PLN02434 fatty acid hydroxylas 99.9 2.7E-23 5.8E-28 200.2 2.8 199 67-344 4-211 (237)
4 KOG0539|consensus 99.9 5.2E-23 1.1E-27 190.8 3.0 200 67-344 4-214 (240)
5 KOG0537|consensus 99.7 2.2E-18 4.8E-23 151.3 2.2 80 36-115 5-85 (124)
6 COG3000 ERG3 Sterol desaturase 99.6 1.4E-14 3E-19 143.7 10.9 134 295-443 98-237 (271)
7 KOG0537|consensus 99.6 8.8E-16 1.9E-20 134.8 2.0 62 2-65 18-79 (124)
8 COG5274 CYB5 Cytochrome b invo 99.5 1.8E-14 4E-19 130.6 2.5 79 34-112 48-127 (164)
9 KOG0536|consensus 99.5 6.5E-15 1.4E-19 128.1 -0.5 75 35-110 67-143 (145)
10 PF00173 Cyt-b5: Cytochrome b5 99.4 5.5E-14 1.2E-18 112.4 -1.1 73 38-110 2-76 (76)
11 PF04116 FA_hydroxylase: Fatty 99.3 3.3E-12 7.1E-17 109.1 6.9 112 296-419 1-114 (114)
12 PLN03199 delta6-acyl-lipid des 99.2 2.3E-12 5E-17 137.6 2.9 87 25-114 12-100 (485)
13 KOG0536|consensus 99.2 4.8E-12 1E-16 110.3 3.0 59 2-64 81-141 (145)
14 PLN03198 delta6-acyl-lipid des 99.2 3.6E-12 7.7E-17 137.0 1.5 76 36-113 104-180 (526)
15 PF00173 Cyt-b5: Cytochrome b5 99.2 5.8E-12 1.3E-16 100.7 1.5 60 2-64 13-74 (76)
16 PLN02252 nitrate reductase [NA 99.1 3.7E-11 7.9E-16 136.2 1.9 79 36-115 518-597 (888)
17 COG5274 CYB5 Cytochrome b invo 99.0 1.1E-10 2.4E-15 106.1 2.5 61 2-64 63-123 (164)
18 PLN03198 delta6-acyl-lipid des 98.8 9.9E-10 2.1E-14 118.2 1.6 60 2-65 117-176 (526)
19 PLN03199 delta6-acyl-lipid des 98.8 2.8E-09 6.1E-14 114.0 2.6 60 2-66 37-96 (485)
20 PLN02869 fatty aldehyde decarb 98.8 3.2E-08 7E-13 106.2 10.2 134 296-445 131-278 (620)
21 PLN02252 nitrate reductase [NA 98.7 5.1E-09 1.1E-13 118.9 1.4 64 2-68 531-594 (888)
22 KOG4576|consensus 98.6 1.8E-08 3.8E-13 88.3 1.8 75 37-113 81-160 (167)
23 KOG4232|consensus 98.6 1.6E-08 3.4E-13 104.0 0.8 46 2-48 21-66 (430)
24 KOG4232|consensus 98.6 2E-08 4.3E-13 103.3 1.4 79 37-116 9-89 (430)
25 PLN02601 beta-carotene hydroxy 98.3 5.4E-06 1.2E-10 80.8 11.3 118 296-428 140-269 (303)
26 KOG0874|consensus 98.2 5.8E-07 1.3E-11 84.9 3.1 192 215-442 62-265 (287)
27 KOG0873|consensus 98.2 9.4E-06 2E-10 80.1 9.6 129 296-445 124-262 (283)
28 KOG0872|consensus 97.8 3.2E-05 6.9E-10 75.6 5.1 129 298-445 134-265 (312)
29 KOG4576|consensus 97.7 7.9E-06 1.7E-10 71.9 -0.8 60 3-65 95-156 (167)
30 PF04116 FA_hydroxylase: Fatty 97.4 0.00042 9.1E-09 58.8 7.1 108 216-339 1-114 (114)
31 PF10520 Kua-UEV1_localn: Kua- 97.2 0.0015 3.3E-08 61.1 8.3 62 377-439 86-155 (178)
32 KOG3011|consensus 96.5 0.016 3.4E-07 56.3 9.1 133 295-437 112-260 (293)
33 COG4892 Predicted heme/steroid 95.3 0.011 2.3E-07 46.7 1.9 72 36-111 2-77 (81)
34 PRK07424 bifunctional sterol d 95.1 0.03 6.4E-07 59.1 5.4 32 411-442 144-175 (406)
35 PLN02601 beta-carotene hydroxy 93.6 0.69 1.5E-05 45.8 10.6 45 295-340 212-260 (303)
36 COG4892 Predicted heme/steroid 86.7 0.72 1.6E-05 36.6 3.1 39 2-45 16-58 (81)
37 cd03512 Alkane-hydroxylase Alk 82.0 45 0.00098 34.0 14.7 24 376-399 206-229 (314)
38 KOG1110|consensus 81.7 1.5 3.3E-05 41.0 3.4 39 3-43 73-112 (183)
39 PF14901 Jiv90: Cleavage induc 56.5 6 0.00013 33.3 1.3 14 9-22 61-74 (94)
40 COG3000 ERG3 Sterol desaturase 55.2 37 0.00081 33.7 6.9 58 376-437 93-151 (271)
41 PRK13743 conjugal transfer pro 52.2 34 0.00073 30.5 5.2 13 214-226 46-58 (141)
42 cd03509 DesA_FADS-like Fatty a 47.5 70 0.0015 32.2 7.6 43 376-419 29-86 (288)
43 KOG1110|consensus 45.8 14 0.0003 34.7 2.0 50 37-88 57-111 (183)
44 cd03514 CrtR_beta-carotene-hyd 45.4 1E+02 0.0022 29.3 8.0 43 377-420 27-85 (207)
45 KOG1108|consensus 44.3 17 0.00038 35.4 2.5 58 30-88 52-115 (281)
46 PF10520 Kua-UEV1_localn: Kua- 39.5 2.3E+02 0.0049 26.7 9.1 42 302-345 93-141 (178)
47 cd03513 CrtW_beta-carotene-ket 35.5 1.1E+02 0.0024 29.8 6.6 13 408-420 83-95 (225)
48 PRK07424 bifunctional sterol d 35.2 56 0.0012 34.6 4.8 40 379-426 13-53 (406)
49 cd03508 Delta4-sphingolipid-FA 29.1 2.3E+02 0.005 28.6 7.9 44 377-420 48-107 (289)
50 cd03511 Rhizopine-oxygenase-li 28.5 1.6E+02 0.0035 29.1 6.7 42 377-420 48-105 (285)
51 COG3239 DesA Fatty acid desatu 28.3 1.3E+02 0.0027 31.2 6.0 45 375-420 65-125 (343)
52 KOG1108|consensus 28.2 40 0.00087 33.0 2.1 41 3-45 77-118 (281)
53 cd01060 Membrane-FADS-like The 27.6 1.4E+02 0.0031 24.7 5.4 13 408-420 50-62 (122)
54 PLN02579 sphingolipid delta-4 27.5 2.3E+02 0.0049 29.1 7.6 42 379-420 79-136 (323)
55 PRK06549 acetyl-CoA carboxylas 26.0 53 0.0012 29.3 2.4 17 1-17 1-17 (130)
56 cd03510 Rhizobitoxine-FADS-lik 25.9 1.9E+02 0.0042 26.7 6.2 13 408-420 71-83 (175)
57 PF00487 FA_desaturase: Fatty 25.9 1.1E+02 0.0023 28.4 4.6 40 381-420 13-67 (257)
58 PF10933 DUF2827: Protein of u 21.9 89 0.0019 32.7 3.4 58 127-190 117-175 (364)
59 PF11698 V-ATPase_H_C: V-ATPas 21.4 10 0.00023 33.3 -2.9 24 14-37 66-89 (119)
60 cd03513 CrtW_beta-carotene-ket 21.3 3.7E+02 0.0081 26.1 7.5 47 296-344 159-217 (225)
No 1
>KOG0539|consensus
Probab=100.00 E-value=1.2e-66 Score=479.77 Aligned_cols=235 Identities=46% Similarity=0.881 Sum_probs=210.0
Q ss_pred ccccccccCCCccccccccCcCcceeeecccCc-cccccCchhhhhccCCcceeeeeEehhhHHHHHhHhhccccccccc
Q psy2044 120 DIEHLVDWTKPMFWQVGSLGPRYREWVLAPVDR-NLRLFHSDFIEKLTRTPVYLVPSVWVPITLLLLYIGYGRVSHFYMA 198 (452)
Q Consensus 120 ~~e~~~d~~KPll~Qv~nL~d~y~~w~~~p~~~-~~rlF~~~~~e~~t~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~ 198 (452)
+.+.++|++||+++||++++|+|+||+|+|+++ ..|+|++|++|.||||.||++|++|+|++++. +...
T Consensus 3 ~~~~~vDl~kpll~Qvg~lg~~Y~ewVHqP~~~~g~r~f~sdflE~lTkT~Ww~VP~iWlPvVvy~----~~~~------ 72 (240)
T KOG0539|consen 3 AKNHTVDLKKPLLFQVGHLGEDYDEWVHQPVDRGGLRLFDSDFLEPLTKTVWWVVPLIWLPVVVYG----FLSF------ 72 (240)
T ss_pred ccccceeccccchhhhccchHHHHHHhcCccccCCCccccchHHHHhhcchhheehhhhhhhhhhe----eeee------
Confidence 356788999999999999999999999999987 99999999999999999999999999999882 1100
Q ss_pred cCCCcccchhhhhhhhHHHHhhhhhHHHHhhhhccccccCCCCcchhhhhhhhhhhhhhHHHHHHHHHHHHhhhhhcccc
Q psy2044 199 THTPFTQLSLFTWCCWYYICGLLLWPLLEYTIHRWIFHLKPNNSRMQMTWKLLRYYTRLFVYLVLLVLYLWFTTVATVGV 278 (452)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~g~~~w~~~ey~~hr~~fh~~~~~~~~~~~~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~~ 278 (452)
+ .+ +
T Consensus 73 t-----------------------------------------~~-----------------------------------~ 76 (240)
T KOG0539|consen 73 T-----------------------------------------TS-----------------------------------Y 76 (240)
T ss_pred c-----------------------------------------cc-----------------------------------c
Confidence 0 00 0
Q ss_pred cCccchhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCCCChHHHHHHHHhhcCCCCCCCCCCccccChHHHHHHH
Q psy2044 279 HDTSVDISLEASWCCWYYICGLLLWPLLEYTIHRWIFHLKPPDNSPLLITLHFGLHGLHHKVPFDDGRLLFPPVPAGILM 358 (452)
Q Consensus 279 ~~~~~~~~l~~~~~~~~f~~G~l~~~~~EY~~HR~lfH~~~~~~~~~~~~l~~~~H~~HH~~p~d~~rlvfpP~~~~~~~ 358 (452)
+. ++ ..+.++ |++|++.||++||.+|||+||.++.+++++..++||.+||+||+.|+|+.||||||+++++++
T Consensus 77 ~~-----s~-~~~~~~-f~~Gvf~WTl~EY~lHRflFH~k~~~~s~~~~t~Hfl~HGcHHk~P~D~~RLVfPP~~~~il~ 149 (240)
T KOG0539|consen 77 ND-----SV-PVFSGL-FVIGVFTWTLIEYTLHRFLFHIKPNPDSYWLITLHFLIHGCHHKLPMDGYRLVFPPTPFAILA 149 (240)
T ss_pred cc-----hh-hhhhHH-HHHHHHHHHHHHHHHHheEEEecCCCCchHHHHHHHHHhcccccCCCCCceEecCCchHHHHH
Confidence 00 00 124454 899999999999999999999998889999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHHHHhccCCCCCchHHHHHHHHHhhcccCCCCCCcceeccchhhhcC
Q psy2044 359 YLGYSLATSLFIPTWNAPLVLAGVITGYLTYDLIHFYLHYGSPHEGSYLYNMKRYHNQHHFAHYESGFGISSKFWDHIFG 438 (452)
Q Consensus 359 ~~~~~l~~~~~~~~~~~~~~~~g~~~gyl~Yd~~Hy~~H~~~~~~~~~~~~lk~~H~~HH~~~~~~nfGVts~~wD~vFG 438 (452)
+++|.++++++ +...|.++++|.++||++||++||++||++|++.++++.+|++|..|||++++.+|||||++||+|||
T Consensus 150 ~pfy~~~~~vl-~~~~~~a~faG~l~GYV~YDmtHYyLHhg~p~~~~~~~~lK~yHl~HHfk~q~~GfGItS~lWD~VFg 228 (240)
T KOG0539|consen 150 APFYLILSLVL-PHPVAPAGFAGGLLGYVCYDMTHYYLHHGSPPKRPYLKHLKKYHLNHHFKHQDLGFGITSSLWDYVFG 228 (240)
T ss_pred HHHHHHHHHhc-CcchhhhhhccchhhhhhhhhhhhhhhcCCCCCchHHHHHHHHHhhhhhhccccCccccHHHHHHHhc
Confidence 99999999999 88999999999999999999999999999998778999999999999999999999999999999999
Q ss_pred ccccccc-ccc
Q psy2044 439 TLIVLRK-LNR 448 (452)
Q Consensus 439 T~~~~~~-~~~ 448 (452)
|....++ .|+
T Consensus 229 Tl~~~~~~~k~ 239 (240)
T KOG0539|consen 229 TLGPLKPLYKL 239 (240)
T ss_pred cCCCCcccccc
Confidence 9988765 443
No 2
>PLN02434 fatty acid hydroxylase
Probab=100.00 E-value=1.5e-65 Score=492.12 Aligned_cols=230 Identities=39% Similarity=0.724 Sum_probs=206.2
Q ss_pred cccccccCCCccccccccCcCcceeeeccc--CccccccCchhhhhccCCcceeeeeEehhhHHHHHhHhhccccccccc
Q psy2044 121 IEHLVDWTKPMFWQVGSLGPRYREWVLAPV--DRNLRLFHSDFIEKLTRTPVYLVPSVWVPITLLLLYIGYGRVSHFYMA 198 (452)
Q Consensus 121 ~e~~~d~~KPll~Qv~nL~d~y~~w~~~p~--~~~~rlF~~~~~e~~t~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~ 198 (452)
++..+|++||+++|++.++|+|++|||+|+ +++.|||+||++|+||||+||+||++|+|+++++.+.|+...
T Consensus 4 ~~~~~d~~kpl~~Qv~~~~~~Y~~~vh~p~~~~~~~rlF~~~~lE~lsrt~w~vvp~iw~pvv~~~~~~~~~~~------ 77 (237)
T PLN02434 4 QKFTVDLNKPLVFQVGHLGEDYEEWVHQPIVSKEGPRFFESDVLEFLTRTVWWAVPLIWLPVVCWCLVKSVRMG------ 77 (237)
T ss_pred hhhcccccchhHHHHHHHhHHHHHHhcCCccCCCCCCCCCcHHHHHhcCCchhhhHHHHHHHHHHHHHHHHhcC------
Confidence 456789999999999999999999999998 567999999999999999999999999999998877665311
Q ss_pred cCCCcccchhhhhhhhHHHHhhhhhHHHHhhhhccccccCCCCcchhhhhhhhhhhhhhHHHHHHHHHHHHhhhhhcccc
Q psy2044 199 THTPFTQLSLFTWCCWYYICGLLLWPLLEYTIHRWIFHLKPNNSRMQMTWKLLRYYTRLFVYLVLLVLYLWFTTVATVGV 278 (452)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~g~~~w~~~ey~~hr~~fh~~~~~~~~~~~~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~~ 278 (452)
...
T Consensus 78 -------------------------------------------~~~---------------------------------- 80 (237)
T PLN02434 78 -------------------------------------------LPL---------------------------------- 80 (237)
T ss_pred -------------------------------------------CcH----------------------------------
Confidence 000
Q ss_pred cCccchhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCCCChHHHHHHHHhhcCCCCCCCCCCccccChHHHHHHH
Q psy2044 279 HDTSVDISLEASWCCWYYICGLLLWPLLEYTIHRWIFHLKPPDNSPLLITLHFGLHGLHHKVPFDDGRLLFPPVPAGILM 358 (452)
Q Consensus 279 ~~~~~~~~l~~~~~~~~f~~G~l~~~~~EY~~HR~lfH~~~~~~~~~~~~l~~~~H~~HH~~p~d~~rlvfpP~~~~~~~ 358 (452)
...++ ++++|+++|+++||++|||+||++| ++++++++||++||+||+.|+|..|+||||+.+++++
T Consensus 81 ----------~~~~~-~~~~G~~~wtl~EY~lHRflfH~~p--~~~~~~~~hfllHg~HH~~P~D~~rLv~PP~~~~~l~ 147 (237)
T PLN02434 81 ----------SAVVL-MVAFGVFIWTLLEYILHRFLFHIKT--KSYWGNTAHYLLHGCHHKHPMDGLRLVFPPAATAILC 147 (237)
T ss_pred ----------HHHHH-HHHHHHHHHHHHHHHHHHHHHcCCC--cchHHHHHHHHHHHHhhcCCCCCCCeecCcHHHHHHH
Confidence 12234 4889999999999999999999997 4789999999999999999999999999999998999
Q ss_pred HHHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHHHHhccCCCCCchHHHHHHHHHhhcccCCCCCCcceeccchhhhcC
Q psy2044 359 YLGYSLATSLFIPTWNAPLVLAGVITGYLTYDLIHFYLHYGSPHEGSYLYNMKRYHNQHHFAHYESGFGISSKFWDHIFG 438 (452)
Q Consensus 359 ~~~~~l~~~~~~~~~~~~~~~~g~~~gyl~Yd~~Hy~~H~~~~~~~~~~~~lk~~H~~HH~~~~~~nfGVts~~wD~vFG 438 (452)
+++|.++.+++ +++.+.++++|+++||++||++||++|+.+|+ ++++|+|||+|++|||+|+++||||||++||+|||
T Consensus 148 ~~~~~l~~~~~-~~~~a~~~~~G~l~gYl~Yd~~Hy~lH~~~p~-~~~~r~lkr~H~~HHfk~~~~~fGVTs~~wD~vFG 225 (237)
T PLN02434 148 VPFWNLIALFA-TPATAPALFGGGLLGYVMYDCTHYFLHHGQPS-TDVLRNLKKYHLNHHFRDQDKGFGITSSLWDRVFG 225 (237)
T ss_pred HHHHHHHHHHc-chhHHHHHHHHHHHHHHHHHHHHHHHHhcCcc-hHHHHHHHHHHHHHcCCCCCCCCCcCchHHHHhcC
Confidence 99999999888 77889999999999999999999999998664 57999999999999999999999999999999999
Q ss_pred cccccccccc
Q psy2044 439 TLIVLRKLNR 448 (452)
Q Consensus 439 T~~~~~~~~~ 448 (452)
|.+++++.++
T Consensus 226 T~~~~~~~~~ 235 (237)
T PLN02434 226 TLPPSKAAKK 235 (237)
T ss_pred CCCCcchhhc
Confidence 9998877443
No 3
>PLN02434 fatty acid hydroxylase
Probab=99.87 E-value=2.7e-23 Score=200.19 Aligned_cols=199 Identities=19% Similarity=0.289 Sum_probs=139.2
Q ss_pred cccCCCCccccccccccccccccccCCCHhHHHhhhhcccccCCCCcccccccccccccccCCCccccccccCcCcceee
Q psy2044 67 KFHPGGSNTIKYFKNGDITEQLIKTHHSPSAYELLKDYRVSDDNPQEYIREEGDIEHLVDWTKPMFWQVGSLGPRYREWV 146 (452)
Q Consensus 67 ~~HPGG~~~il~~aGkD~t~~f~~~~Hs~~a~~~L~~~~iG~l~~~e~~~e~~~~e~~~d~~KPll~Qv~nL~d~y~~w~ 146 (452)
+++.-+.++.+-.|.+-.+|.|.+++|.|..++ ++.++.+.+-.|..+++ .|+
T Consensus 4 ~~~~~d~~kpl~~Qv~~~~~~Y~~~vh~p~~~~--~~~rlF~~~~lE~lsrt-------------------------~w~ 56 (237)
T PLN02434 4 QKFTVDLNKPLVFQVGHLGEDYEEWVHQPIVSK--EGPRFFESDVLEFLTRT-------------------------VWW 56 (237)
T ss_pred hhhcccccchhHHHHHHHhHHHHHHhcCCccCC--CCCCCCCcHHHHHhcCC-------------------------chh
Confidence 345556666666666678888888899887542 34566665555555555 899
Q ss_pred ecccCccccccCchhhhhccCCcceeeeeEehhhHHHHHhHhhccccccccccCCCcccchhhhhhhhHHHHhhhhhHHH
Q psy2044 147 LAPVDRNLRLFHSDFIEKLTRTPVYLVPSVWVPITLLLLYIGYGRVSHFYMATHTPFTQLSLFTWCCWYYICGLLLWPLL 226 (452)
Q Consensus 147 ~~p~~~~~rlF~~~~~e~~t~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~w~~~ 226 (452)
..|. .|+|+++|+...+.. .+.... ..++++++|+++|||+
T Consensus 57 vvp~-------------------iw~pvv~~~~~~~~~--~~~~~~------------------~~~~~~~~G~~~wtl~ 97 (237)
T PLN02434 57 AVPL-------------------IWLPVVCWCLVKSVR--MGLPLS------------------AVVLMVAFGVFIWTLL 97 (237)
T ss_pred hhHH-------------------HHHHHHHHHHHHHHh--cCCcHH------------------HHHHHHHHHHHHHHHH
Confidence 9999 899999999887654 333322 2345688999999999
Q ss_pred HhhhhccccccCCCCcchh---hh-h----hhhhhhhhhHHHHHHHHH-HHHhhhhhcccccCccchhhhHHHHHHHHHH
Q psy2044 227 EYTIHRWIFHLKPNNSRMQ---MT-W----KLLRYYTRLFVYLVLLVL-YLWFTTVATVGVHDTSVDISLEASWCCWYYI 297 (452)
Q Consensus 227 ey~~hr~~fh~~~~~~~~~---~~-~----~~~~~~~rl~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~f~ 297 (452)
||++|||+||++|++.... +. + ++|+|..||||||.++++ ...+......-++. ..+ .++++ |++
T Consensus 98 EY~lHRflfH~~p~~~~~~~~hfllHg~HH~~P~D~~rLv~PP~~~~~l~~~~~~l~~~~~~~---~~a--~~~~~-G~l 171 (237)
T PLN02434 98 EYILHRFLFHIKTKSYWGNTAHYLLHGCHHKHPMDGLRLVFPPAATAILCVPFWNLIALFATP---ATA--PALFG-GGL 171 (237)
T ss_pred HHHHHHHHHcCCCcchHHHHHHHHHHHHhhcCCCCCCCeecCcHHHHHHHHHHHHHHHHHcch---hHH--HHHHH-HHH
Confidence 9999999999999876433 21 1 679999999999998654 22222111110111 122 34444 589
Q ss_pred HHHHHHHHHHHHHhhhhcccCCCCCChHHHHHHHHhhcCCCCCCCCC
Q psy2044 298 CGLLLWPLLEYTIHRWIFHLKPPDNSPLLITLHFGLHGLHHKVPFDD 344 (452)
Q Consensus 298 ~G~l~~~~~EY~~HR~lfH~~~~~~~~~~~~l~~~~H~~HH~~p~d~ 344 (452)
+|+++|+.++|++|+. +|+ +++.+.+. +.|..||+...|.
T Consensus 172 ~gYl~Yd~~Hy~lH~~----~p~--~~~~r~lk-r~H~~HHfk~~~~ 211 (237)
T PLN02434 172 LGYVMYDCTHYFLHHG----QPS--TDVLRNLK-KYHLNHHFRDQDK 211 (237)
T ss_pred HHHHHHHHHHHHHHhc----Ccc--hHHHHHHH-HHHHHHcCCCCCC
Confidence 9999999999999984 553 57888885 9999999976544
No 4
>KOG0539|consensus
Probab=99.86 E-value=5.2e-23 Score=190.79 Aligned_cols=200 Identities=24% Similarity=0.352 Sum_probs=136.9
Q ss_pred cccCCCCccccccccccccccccccCCCHhHHHhhhhcccccCCCCcccccccccccccccCCCccccccccCcCcceee
Q psy2044 67 KFHPGGSNTIKYFKNGDITEQLIKTHHSPSAYELLKDYRVSDDNPQEYIREEGDIEHLVDWTKPMFWQVGSLGPRYREWV 146 (452)
Q Consensus 67 ~~HPGG~~~il~~aGkD~t~~f~~~~Hs~~a~~~L~~~~iG~l~~~e~~~e~~~~e~~~d~~KPll~Qv~nL~d~y~~w~ 146 (452)
++|-.+.+..+..+.++++|.|++++|.|.+++ ..+....+--|..+++ .||
T Consensus 4 ~~~~vDl~kpll~Qvg~lg~~Y~ewVHqP~~~~---g~r~f~sdflE~lTkT-------------------------~Ww 55 (240)
T KOG0539|consen 4 KNHTVDLKKPLLFQVGHLGEDYDEWVHQPVDRG---GLRLFDSDFLEPLTKT-------------------------VWW 55 (240)
T ss_pred cccceeccccchhhhccchHHHHHHhcCccccC---CCccccchHHHHhhcc-------------------------hhh
Confidence 456667788888899999999999999998742 4455555555555554 899
Q ss_pred ecccCccccccCchhhhhccCCcceeeeeEehhhHHHHHhHhhccccccccccCCCcccchhhhhhhhHHHHhhhhhHHH
Q psy2044 147 LAPVDRNLRLFHSDFIEKLTRTPVYLVPSVWVPITLLLLYIGYGRVSHFYMATHTPFTQLSLFTWCCWYYICGLLLWPLL 226 (452)
Q Consensus 147 ~~p~~~~~rlF~~~~~e~~t~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~w~~~ 226 (452)
.+|. +|+|+++|....... +... .+..++.+|++|+++|||+
T Consensus 56 ~VP~-------------------iWlPvVvy~~~~~t~---~~~~----------------s~~~~~~~f~~Gvf~WTl~ 97 (240)
T KOG0539|consen 56 VVPL-------------------IWLPVVVYGFLSFTT---SYND----------------SVPVFSGLFVIGVFTWTLI 97 (240)
T ss_pred eehh-------------------hhhhhhhheeeeecc---cccc----------------hhhhhhHHHHHHHHHHHHH
Confidence 9999 999999995332222 2221 1224667899999999999
Q ss_pred HhhhhccccccCCC-Ccchhhhh---------hhhhhhhhhHHHHHHHHHH-HHhhhhhcccccCccchhhhHHHHHHHH
Q psy2044 227 EYTIHRWIFHLKPN-NSRMQMTW---------KLLRYYTRLFVYLVLLVLY-LWFTTVATVGVHDTSVDISLEASWCCWY 295 (452)
Q Consensus 227 ey~~hr~~fh~~~~-~~~~~~~~---------~~~~~~~rl~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 295 (452)
||.+|||+||++|+ ++..+++. ..|-|..|||+||.+..++ ..+......-++. ..+ .+..+ |
T Consensus 98 EY~lHRflFH~k~~~~s~~~~t~Hfl~HGcHHk~P~D~~RLVfPP~~~~il~~pfy~~~~~vl~~---~~~--~a~fa-G 171 (240)
T KOG0539|consen 98 EYTLHRFLFHIKPNPDSYWLITLHFLIHGCHHKLPMDGYRLVFPPTPFAILAAPFYLILSLVLPH---PVA--PAGFA-G 171 (240)
T ss_pred HHHHHheEEEecCCCCchHHHHHHHHHhcccccCCCCCceEecCCchHHHHHHHHHHHHHHhcCc---chh--hhhhc-c
Confidence 99999999999974 33333322 5699999999999987662 2222221111111 011 22333 4
Q ss_pred HHHHHHHHHHHHHHHhhhhcccCCCCCChHHHHHHHHhhcCCCCCCCCC
Q psy2044 296 YICGLLLWPLLEYTIHRWIFHLKPPDNSPLLITLHFGLHGLHHKVPFDD 344 (452)
Q Consensus 296 f~~G~l~~~~~EY~~HR~lfH~~~~~~~~~~~~l~~~~H~~HH~~p~d~ 344 (452)
-++||+.|++++|.+|. .+|++ .+..+.+ .+-|-.||..-.|.
T Consensus 172 ~l~GYV~YDmtHYyLHh----g~p~~-~~~~~~l-K~yHl~HHfk~q~~ 214 (240)
T KOG0539|consen 172 GLLGYVCYDMTHYYLHH----GSPPK-RPYLKHL-KKYHLNHHFKHQDL 214 (240)
T ss_pred chhhhhhhhhhhhhhhc----CCCCC-chHHHHH-HHHHhhhhhhcccc
Confidence 68999999999988775 46642 3566666 37899999987665
No 5
>KOG0537|consensus
Probab=99.71 E-value=2.2e-18 Score=151.25 Aligned_cols=80 Identities=23% Similarity=0.314 Sum_probs=74.5
Q ss_pred CccchhhhcccCC-CCCcccccCceeeecccccccCCCCccccccccccccccccccCCCHhHHHhhhhcccccCCCCcc
Q psy2044 36 GDITEQLIKTHHS-PSAYGHHVPRKHNVAKFLKFHPGGSNTIKYFKNGDITEQLIKTHHSPSAYELLKDYRVSDDNPQEY 114 (452)
Q Consensus 36 kDvT~~eva~Hhs-~~~wv~i~lkvYdVg~fl~~HPGG~~~il~~aGkD~t~~f~~~~Hs~~a~~~L~~~~iG~l~~~e~ 114 (452)
+-+|.+|+++||+ +|||+++.++|||||+|+++||||.++|+.+||||+|+.|....||..|++||++|+||++...+.
T Consensus 5 k~~~~~EV~kHn~~~d~Wvii~gkVYDvT~Fl~eHPGG~~vLl~~AGkDaT~~F~~~gHS~~A~~ml~~y~ig~~~~~~~ 84 (124)
T KOG0537|consen 5 KYYTLSEVAKHNKKDDCWVIIHGKVYDVTSFLDEHPGGEDVLLEYAGKDATEAFEDVGHSKDAREMLEEYYIGEVPTTAR 84 (124)
T ss_pred ccccHHHHHhhcCCCCeEEEECCEEEeccchhhhCCChHHHHHHHhchhhHHhccccCCcHHHHHHhhhcccccccCCCc
Confidence 5678999999999 889999999999999999999999999999999999999988789999999999999999986654
Q ss_pred c
Q psy2044 115 I 115 (452)
Q Consensus 115 ~ 115 (452)
.
T Consensus 85 ~ 85 (124)
T KOG0537|consen 85 P 85 (124)
T ss_pred c
Confidence 3
No 6
>COG3000 ERG3 Sterol desaturase [Lipid metabolism]
Probab=99.56 E-value=1.4e-14 Score=143.72 Aligned_cols=134 Identities=29% Similarity=0.430 Sum_probs=101.4
Q ss_pred HHHHHHHHHHHHHHHHhhhhcccCCCCCChHHHHHHHHhhcCCCCCCCCCCcc--ccChHHHHHHHHHHHHHHHHhhcCC
Q psy2044 295 YYICGLLLWPLLEYTIHRWIFHLKPPDNSPLLITLHFGLHGLHHKVPFDDGRL--LFPPVPAGILMYLGYSLATSLFIPT 372 (452)
Q Consensus 295 ~f~~G~l~~~~~EY~~HR~lfH~~~~~~~~~~~~l~~~~H~~HH~~p~d~~rl--vfpP~~~~~~~~~~~~l~~~~~~~~ 372 (452)
.+++++++-++..|+.|| ++|..+ ++++.|.+||..+...... -++|++.++.+........ ++ +
T Consensus 98 ~~~~~~~~~D~~~Y~~HR-~~H~~~---------~~w~~H~~HH~~~~~~~~t~~~~hp~e~ll~~~~~~~~~~-l~-~- 164 (271)
T COG3000 98 QLLLAFLFLDLGYYWAHR-LLHRVP---------LLWAFHKVHHSSEVPDPLTALRFHPLEILLLAFLGLLPLL-LL-G- 164 (271)
T ss_pred HHHHHHHHHHHHHHHHHH-HHhhhH---------HHHHHHHhhcCcccCCchhhhhcChHHHHHHHHHHHHHHH-Hh-c-
Confidence 478899999999999999 688653 3358999999998776544 4678887665433322222 22 2
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHhccCCCCCchHHH---HHHHHHhhcccCC-CCCCcceeccchhhhcCccccc
Q psy2044 373 WNAPLVLAGVITGYLTYDLIHFYLHYGSPHEGSYLY---NMKRYHNQHHFAH-YESGFGISSKFWDHIFGTLIVL 443 (452)
Q Consensus 373 ~~~~~~~~g~~~gyl~Yd~~Hy~~H~~~~~~~~~~~---~lk~~H~~HH~~~-~~~nfGVts~~wD~vFGT~~~~ 443 (452)
.-..++...+.+.++.+.++|.-.+++.+ ..+++ ...++|+.||.++ .++|||+++++|||+|||+..+
T Consensus 165 ~~~~~~~~~~~~~~~~~~~~H~~~~~~~~--~~~~~~v~~~p~~H~lHH~~~~~~~Nyg~~~~~WDrlFGT~~~~ 237 (271)
T COG3000 165 LSPVAVALLFIFLLFWAVLIHSNLDLPLP--LGWLRYVFNTPRHHRLHHSKDPYDKNYGVTLTFWDRLFGTYHPP 237 (271)
T ss_pred CCHHHHHHHHHHHHHHHHHHhcCccccCC--cccceeeecCchHHHHhccCCCCCCcchhhhHHHHHHcccCCCC
Confidence 23567777888999999999999887522 12443 6679999999999 6899999999999999998654
No 7
>KOG0537|consensus
Probab=99.56 E-value=8.8e-16 Score=134.85 Aligned_cols=62 Identities=23% Similarity=0.370 Sum_probs=56.7
Q ss_pred CCceEEEEcCeEeecccccccCCCchhHhhhhcCCccchhhhcccCCCCCcccccCceeeeccc
Q psy2044 2 SQEFLIEHKGQKHNVAKFLKFHPGGSNTIKYFKNGDITEQLIKTHHSPSAYGHHVPRKHNVAKF 65 (452)
Q Consensus 2 ~~~~wv~i~gkvYDvT~fl~~HPGG~~~L~~~aGkDvT~~eva~Hhs~~~wv~i~lkvYdVg~f 65 (452)
++||||+|+|||||||+|+++||||.++|+++||||+|+.|....||++++. +++.|.||+.
T Consensus 18 ~~d~Wvii~gkVYDvT~Fl~eHPGG~~vLl~~AGkDaT~~F~~~gHS~~A~~--ml~~y~ig~~ 79 (124)
T KOG0537|consen 18 KDDCWVIIHGKVYDVTSFLDEHPGGEDVLLEYAGKDATEAFEDVGHSKDARE--MLEEYYIGEV 79 (124)
T ss_pred CCCeEEEECCEEEeccchhhhCCChHHHHHHHhchhhHHhccccCCcHHHHH--Hhhhcccccc
Confidence 5789999999999999999999999999999999999999998877766554 7899999985
No 8
>COG5274 CYB5 Cytochrome b involved in lipid metabolism [Energy production and conversion / Lipid metabolism]
Probab=99.46 E-value=1.8e-14 Score=130.64 Aligned_cols=79 Identities=28% Similarity=0.321 Sum_probs=71.2
Q ss_pred cCCccchhhhcccCC-CCCcccccCceeeecccccccCCCCccccccccccccccccccCCCHhHHHhhhhcccccCCCC
Q psy2044 34 KNGDITEQLIKTHHS-PSAYGHHVPRKHNVAKFLKFHPGGSNTIKYFKNGDITEQLIKTHHSPSAYELLKDYRVSDDNPQ 112 (452)
Q Consensus 34 aGkDvT~~eva~Hhs-~~~wv~i~lkvYdVg~fl~~HPGG~~~il~~aGkD~t~~f~~~~Hs~~a~~~L~~~~iG~l~~~ 112 (452)
.-++++.+|+.+|++ ++||++++++||||+.|+++||||.++|+..+|+|+|++|....|+..+.++|++++|+++...
T Consensus 48 ~~~~~~~eev~~h~~~~d~~ivi~g~VyDvs~fl~~HPGGe~ii~~~~g~Dat~~f~~~~~~~~~~~llk~~yv~~v~r~ 127 (164)
T COG5274 48 SPKPITAEEVAKHNKSEDCWIVINGKVYDVSQFLDEHPGGEDIIKDTAGKDATKAFNFLHHSHQIGNLLKDVYVDQVHRP 127 (164)
T ss_pred ccccccHHHHHHhcCccceEEEEcCEEEEhhhccccCCCcceeehhccCchhhhhhcccccchhHHhhhhceeeecccCc
Confidence 356678889999988 8899999999999999999999999999999999999999888899888888888999887543
No 9
>KOG0536|consensus
Probab=99.46 E-value=6.5e-15 Score=128.06 Aligned_cols=75 Identities=27% Similarity=0.289 Sum_probs=68.3
Q ss_pred CCccchhhhcccCC-CCCcccccCceeeecccccccCCCCccccccccccccccccccCCCHhH-HHhhhhcccccCC
Q psy2044 35 NGDITEQLIKTHHS-PSAYGHHVPRKHNVAKFLKFHPGGSNTIKYFKNGDITEQLIKTHHSPSA-YELLKDYRVSDDN 110 (452)
Q Consensus 35 GkDvT~~eva~Hhs-~~~wv~i~lkvYdVg~fl~~HPGG~~~il~~aGkD~t~~f~~~~Hs~~a-~~~L~~~~iG~l~ 110 (452)
...+|.+|+++|++ +|||+.+.++||||+.|++.||||.+.|++++|+|+|+.|++ .|..++ +++|+.+.||.+.
T Consensus 67 ~i~vt~~El~KH~~~dDcW~~i~G~VYnVt~Yl~fHPgG~d~lmk~aGrD~T~~Fnk-~H~WVN~e~LL~~c~VGvl~ 143 (145)
T KOG0536|consen 67 PIPVTAEELKKHNKKDDCWIAIRGKVYNVTAYLDFHPGGVDELMKHAGRDATKLFNK-YHAWVNYEELLKKCFVGVLV 143 (145)
T ss_pred CCccCHHHHHhhCCccceEEEEcCEEEecccccccCCCCHHHHHHhcCcchHHHHHH-HHHHhcHHHHHhhceeeeec
Confidence 33688999999999 999999999999999999999999999999999999999988 788888 4588889999774
No 10
>PF00173 Cyt-b5: Cytochrome b5-like Heme/Steroid binding domain This prints entry is a subset of the Pfam entry; InterPro: IPR001199 Cytochromes b5 are ubiquitous electron transport proteins found in animals, plants and yeasts []. The microsomal and mitochondrial variants are membrane-bound, while those from erythrocytes and other animal tissues are water-soluble [, ]. The 3D structure of bovine cyt b5 is known, the fold belonging to the alpha+beta class, with 5 strands and 5 short helices forming a framework for supporting a central haem group []. The cytochrome b5 domain is similar to that of a number of oxidoreductases, such as plant and fungal nitrate reductases, sulphite oxidase, yeast flavocytochrome b2 (L-lactate dehydrogenase) and plant cyt b5/acyl lipid desaturase fusion protein.; GO: 0020037 heme binding; PDB: 2I96_A 3KS0_A 1KBI_B 1KBJ_B 1LTD_A 1SZG_B 1SZF_A 1LDC_B 2OZ0_B 1LCO_A ....
Probab=99.36 E-value=5.5e-14 Score=112.45 Aligned_cols=73 Identities=25% Similarity=0.337 Sum_probs=66.6
Q ss_pred cchhhhcccCC-CCCcccccCceeeecccccccCCCCccccccccccccccccccCCCHhHHHhhhh-cccccCC
Q psy2044 38 ITEQLIKTHHS-PSAYGHHVPRKHNVAKFLKFHPGGSNTIKYFKNGDITEQLIKTHHSPSAYELLKD-YRVSDDN 110 (452)
Q Consensus 38 vT~~eva~Hhs-~~~wv~i~lkvYdVg~fl~~HPGG~~~il~~aGkD~t~~f~~~~Hs~~a~~~L~~-~~iG~l~ 110 (452)
+|.+|+++|++ +++|+++.+++||||+|+..||||.+.++.++|+|+|+.|....|+..+.++|++ |+||.++
T Consensus 2 ~t~~el~~h~~~~~~~v~i~g~VYDvt~~~~~hpgg~~~~~~~aG~D~T~~f~~~~h~~~~~~~l~~~~~vG~ld 76 (76)
T PF00173_consen 2 YTWEELAKHNKKGDCWVIIDGKVYDVTDFLDRHPGGADILKKYAGRDATDAFEEAFHSWWAEKCLEKYYKVGYLD 76 (76)
T ss_dssp EEHHHHTTTEETTEEEEEETTEEEECTTTTTTSTTTSHHHHTTTTSBTHHHHHHHTHHHHHHHHHHGCGEEEEE-
T ss_pred CCHHHHhhhCCCCCEEEEECCEEcccccccccccchhHHHHHhccccccHHHhhccCcHHHHHHccCCCEEEEeC
Confidence 57889999987 8899999999999999999999999999999999999999445899999999998 9999874
No 11
>PF04116 FA_hydroxylase: Fatty acid hydroxylase superfamily; InterPro: IPR006694 This superfamily includes fatty acid and carotene hydroxylases and sterol desaturases. Beta-carotene hydroxylase is involved in zeaxanthin synthesis by hydroxylating beta-carotene, but the enzyme may be involved in other pathways []. This family includes C-5 sterol desaturase and C-4 sterol methyl oxidase. Members of this family are involved in cholesterol biosynthesis and biosynthesis a plant cuticular wax. These enzymes contain two copies of a HXHH motif. Members of this family are integral membrane proteins.; GO: 0005506 iron ion binding, 0016491 oxidoreductase activity, 0006633 fatty acid biosynthetic process, 0055114 oxidation-reduction process
Probab=99.31 E-value=3.3e-12 Score=109.11 Aligned_cols=112 Identities=34% Similarity=0.536 Sum_probs=80.7
Q ss_pred HHHHHHHHHHHHHHHhhhhcccCCCCCChHHHHHHHHhhcCCCCC--CCCCCccccChHHHHHHHHHHHHHHHHhhcCCc
Q psy2044 296 YICGLLLWPLLEYTIHRWIFHLKPPDNSPLLITLHFGLHGLHHKV--PFDDGRLLFPPVPAGILMYLGYSLATSLFIPTW 373 (452)
Q Consensus 296 f~~G~l~~~~~EY~~HR~lfH~~~~~~~~~~~~l~~~~H~~HH~~--p~d~~rlvfpP~~~~~~~~~~~~l~~~~~~~~~ 373 (452)
|++|++++++.||++|| ++|..+ + ++ +.|..||.. |.-.....++|++.++...+...+...+ ...
T Consensus 1 f~~~~l~~d~~~Y~~HR-l~H~~~-----~---l~-~~H~~HH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~ 68 (114)
T PF04116_consen 1 FLLGFLLWDFWEYWMHR-LLHKIP-----F---LW-RIHKVHHSPKNPTPLSAFRFHPLEALLLALLPLLLPLLL--LPF 68 (114)
T ss_pred CeeeHHHHHHHHHHHHH-HHhcCc-----h---HH-HHHHHHhCCcccCchHHHHcChHHHHHHHHHHHHHHHHH--HhH
Confidence 46789999999999999 999433 2 33 678888864 2111223577877766544333222222 234
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhccCCCCCchHHHHHHHHHhhccc
Q psy2044 374 NAPLVLAGVITGYLTYDLIHFYLHYGSPHEGSYLYNMKRYHNQHHF 419 (452)
Q Consensus 374 ~~~~~~~g~~~gyl~Yd~~Hy~~H~~~~~~~~~~~~lk~~H~~HH~ 419 (452)
.+.+++++.+++++.|+++|...+...++..++++..+++|..||+
T Consensus 69 ~~~~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~~~~~H~~HH~ 114 (114)
T PF04116_consen 69 HALAFLLGIALFYLWYIFIHSGYHHRFPPRLRYLFVTPRHHDLHHS 114 (114)
T ss_pred hHHHHHHHHHHHHHHHHHhhcCccCCCCCcchhHhcCHHHHHhhCc
Confidence 5778889999999999999999976666666788999999999995
No 12
>PLN03199 delta6-acyl-lipid desaturase-like protein; Provisional
Probab=99.25 E-value=2.3e-12 Score=137.63 Aligned_cols=87 Identities=29% Similarity=0.418 Sum_probs=74.4
Q ss_pred CchhHhhh-hcCCccchhhhcccCC-CCCcccccCceeeecccccccCCCCccccccccccccccccccCCCHhHHHhhh
Q psy2044 25 GGSNTIKY-FKNGDITEQLIKTHHS-PSAYGHHVPRKHNVAKFLKFHPGGSNTIKYFKNGDITEQLIKTHHSPSAYELLK 102 (452)
Q Consensus 25 GG~~~L~~-~aGkDvT~~eva~Hhs-~~~wv~i~lkvYdVg~fl~~HPGG~~~il~~aGkD~t~~f~~~~Hs~~a~~~L~ 102 (452)
||+..++. ...+.+|.+|+++|++ ++||++++++|||||+|+ +||||+ +|+.++|+|+|+.|.. .||+.++++|+
T Consensus 12 ~~~~~~~~~~~~~~~s~~ev~~h~~~~~~wi~i~g~vYDvt~f~-~HPGG~-~i~~~aG~DaT~~F~~-~H~~~~~~~l~ 88 (485)
T PLN03199 12 GRSAALKLAEKPQKISWQEVKKHASPDDAWIIHQNKVYDVSNWH-DHPGGA-VIFTHAGDDMTDIFAA-FHAPGSQALMK 88 (485)
T ss_pred CCccccccCccCCccCHHHHHhhCCCCCeEEEECCEEEcCCCcC-cCCCch-HHHhhCCCChhHHHHH-hcCHHHHHHHH
Confidence 34433333 4577899999999988 899999999999999997 899997 7889999999999977 69999999999
Q ss_pred hcccccCCCCcc
Q psy2044 103 DYRVSDDNPQEY 114 (452)
Q Consensus 103 ~~~iG~l~~~e~ 114 (452)
+|+||++++++.
T Consensus 89 ~~~iG~l~~~~~ 100 (485)
T PLN03199 89 KFYIGDLIPEST 100 (485)
T ss_pred hccccccccccc
Confidence 999999976543
No 13
>KOG0536|consensus
Probab=99.22 E-value=4.8e-12 Score=110.30 Aligned_cols=59 Identities=29% Similarity=0.447 Sum_probs=50.3
Q ss_pred CCceEEEEcCeEeecccccccCCCchhHhhhhcCCccchhhhcccCCCCCcccc--cCceeeecc
Q psy2044 2 SQEFLIEHKGQKHNVAKFLKFHPGGSNTIKYFKNGDITEQLIKTHHSPSAYGHH--VPRKHNVAK 64 (452)
Q Consensus 2 ~~~~wv~i~gkvYDvT~fl~~HPGG~~~L~~~aGkDvT~~eva~Hhs~~~wv~i--~lkvYdVg~ 64 (452)
++|||++|+|+|||||.|++.||||.+.|++.+|+|.|..|.+.| +||-+ .+++.-||-
T Consensus 81 ~dDcW~~i~G~VYnVt~Yl~fHPgG~d~lmk~aGrD~T~~Fnk~H----~WVN~e~LL~~c~VGv 141 (145)
T KOG0536|consen 81 KDDCWIAIRGKVYNVTAYLDFHPGGVDELMKHAGRDATKLFNKYH----AWVNYEELLKKCFVGV 141 (145)
T ss_pred ccceEEEEcCEEEecccccccCCCCHHHHHHhcCcchHHHHHHHH----HHhcHHHHHhhceeee
Confidence 589999999999999999999999999999999999999998877 57642 445555543
No 14
>PLN03198 delta6-acyl-lipid desaturase; Provisional
Probab=99.20 E-value=3.6e-12 Score=136.97 Aligned_cols=76 Identities=22% Similarity=0.351 Sum_probs=69.9
Q ss_pred CccchhhhcccCC-CCCcccccCceeeecccccccCCCCccccccccccccccccccCCCHhHHHhhhhcccccCCCCc
Q psy2044 36 GDITEQLIKTHHS-PSAYGHHVPRKHNVAKFLKFHPGGSNTIKYFKNGDITEQLIKTHHSPSAYELLKDYRVSDDNPQE 113 (452)
Q Consensus 36 kDvT~~eva~Hhs-~~~wv~i~lkvYdVg~fl~~HPGG~~~il~~aGkD~t~~f~~~~Hs~~a~~~L~~~~iG~l~~~e 113 (452)
+.+|.+|+++|++ +|||+++++++||||+|+++||||+ .|+.++|+|+|+.|.+ .|++.+.++|++|+||++++.+
T Consensus 104 ~~~t~~ev~~H~~~~d~Wivi~gkVYDvT~fl~~HPGG~-~i~~~aG~DaT~~F~~-~H~~~~~~~l~~~~IG~l~~~~ 180 (526)
T PLN03198 104 KSHLLSEVAAHNKPNDCWIVIKNKVYDVSDFAAEHPGGS-VISTYFGRDGTDAFSS-FHAASTWKILQDFYIGDVDNVE 180 (526)
T ss_pred CcCCHHHHHhhCCCCCeEEEECCEEEecHHHHHhCCCch-HHHHhcCCcHhHHHHH-hcCHHHHHHHhhCcceecCCcc
Confidence 3678889999998 8999999999999999999999997 8999999999999987 6999999999999999997644
No 15
>PF00173 Cyt-b5: Cytochrome b5-like Heme/Steroid binding domain This prints entry is a subset of the Pfam entry; InterPro: IPR001199 Cytochromes b5 are ubiquitous electron transport proteins found in animals, plants and yeasts []. The microsomal and mitochondrial variants are membrane-bound, while those from erythrocytes and other animal tissues are water-soluble [, ]. The 3D structure of bovine cyt b5 is known, the fold belonging to the alpha+beta class, with 5 strands and 5 short helices forming a framework for supporting a central haem group []. The cytochrome b5 domain is similar to that of a number of oxidoreductases, such as plant and fungal nitrate reductases, sulphite oxidase, yeast flavocytochrome b2 (L-lactate dehydrogenase) and plant cyt b5/acyl lipid desaturase fusion protein.; GO: 0020037 heme binding; PDB: 2I96_A 3KS0_A 1KBI_B 1KBJ_B 1LTD_A 1SZG_B 1SZF_A 1LDC_B 2OZ0_B 1LCO_A ....
Probab=99.18 E-value=5.8e-12 Score=100.68 Aligned_cols=60 Identities=23% Similarity=0.395 Sum_probs=49.8
Q ss_pred CCceEEEEcCeEeecccccccCCCchhHhhhhcCCccchhh-hcccCCCCCcccccCce-eeecc
Q psy2044 2 SQEFLIEHKGQKHNVAKFLKFHPGGSNTIKYFKNGDITEQL-IKTHHSPSAYGHHVPRK-HNVAK 64 (452)
Q Consensus 2 ~~~~wv~i~gkvYDvT~fl~~HPGG~~~L~~~aGkDvT~~e-va~Hhs~~~wv~i~lkv-YdVg~ 64 (452)
+++|||+|+|+|||||+|+..||||.++++.++|+|+|+.+ ...|. .+....++. |.||.
T Consensus 13 ~~~~~v~i~g~VYDvt~~~~~hpgg~~~~~~~aG~D~T~~f~~~~h~---~~~~~~l~~~~~vG~ 74 (76)
T PF00173_consen 13 KGDCWVIIDGKVYDVTDFLDRHPGGADILKKYAGRDATDAFEEAFHS---WWAEKCLEKYYKVGY 74 (76)
T ss_dssp TTEEEEEETTEEEECTTTTTTSTTTSHHHHTTTTSBTHHHHHHHTHH---HHHHHHHHGCGEEEE
T ss_pred CCCEEEEECCEEcccccccccccchhHHHHHhccccccHHHhhccCc---HHHHHHccCCCEEEE
Confidence 57899999999999999999999999999999999999998 55543 334344454 88876
No 16
>PLN02252 nitrate reductase [NADPH]
Probab=99.07 E-value=3.7e-11 Score=136.17 Aligned_cols=79 Identities=28% Similarity=0.357 Sum_probs=72.3
Q ss_pred CccchhhhcccCC-CCCcccccCceeeecccccccCCCCccccccccccccccccccCCCHhHHHhhhhcccccCCCCcc
Q psy2044 36 GDITEQLIKTHHS-PSAYGHHVPRKHNVAKFLKFHPGGSNTIKYFKNGDITEQLIKTHHSPSAYELLKDYRVSDDNPQEY 114 (452)
Q Consensus 36 kDvT~~eva~Hhs-~~~wv~i~lkvYdVg~fl~~HPGG~~~il~~aGkD~t~~f~~~~Hs~~a~~~L~~~~iG~l~~~e~ 114 (452)
+.+|.+|+++|++ ++||++++++|||+|+|+++||||.+.|+.++|+|+|+.|.. .|+..|+++|++|+||.+...+.
T Consensus 518 ~~~t~~ev~~h~~~~~~Wivi~g~VYDvT~fl~~HPGG~~~I~~~aG~DaT~~F~~-~Hs~~a~~~L~~~~IG~l~~~~~ 596 (888)
T PLN02252 518 KQYTMSEVRKHNSEDSCWIVVHGHVYDCTRFLKDHPGGADSILINAGTDCTEEFDA-IHSDKAKKMLEDYRIGELVTTGA 596 (888)
T ss_pred ceeCHHHHHhhCcCCCeEEEECCEEEeCHHHHHHCCChHHHHHhhcCCCcHHHHhh-hhhHHHHHHHHhCcCCccccccc
Confidence 4577889999988 889999999999999999999999999999999999999987 79999999999999999976554
Q ss_pred c
Q psy2044 115 I 115 (452)
Q Consensus 115 ~ 115 (452)
.
T Consensus 597 ~ 597 (888)
T PLN02252 597 A 597 (888)
T ss_pred c
Confidence 4
No 17
>COG5274 CYB5 Cytochrome b involved in lipid metabolism [Energy production and conversion / Lipid metabolism]
Probab=99.02 E-value=1.1e-10 Score=106.10 Aligned_cols=61 Identities=30% Similarity=0.404 Sum_probs=51.6
Q ss_pred CCceEEEEcCeEeecccccccCCCchhHhhhhcCCccchhhhcccCCCCCcccccCceeeecc
Q psy2044 2 SQEFLIEHKGQKHNVAKFLKFHPGGSNTIKYFKNGDITEQLIKTHHSPSAYGHHVPRKHNVAK 64 (452)
Q Consensus 2 ~~~~wv~i~gkvYDvT~fl~~HPGG~~~L~~~aGkDvT~~eva~Hhs~~~wv~i~lkvYdVg~ 64 (452)
+++|||+|+|+|||||.|++.||||+++|+..+|+|+|+.+...++++.. -..++.+.|+.
T Consensus 63 ~~d~~ivi~g~VyDvs~fl~~HPGGe~ii~~~~g~Dat~~f~~~~~~~~~--~~llk~~yv~~ 123 (164)
T COG5274 63 SEDCWIVINGKVYDVSQFLDEHPGGEDIIKDTAGKDATKAFNFLHHSHQI--GNLLKDVYVDQ 123 (164)
T ss_pred ccceEEEEcCEEEEhhhccccCCCcceeehhccCchhhhhhcccccchhH--Hhhhhceeeec
Confidence 67899999999999999999999999999999999999998887777332 22455666755
No 18
>PLN03198 delta6-acyl-lipid desaturase; Provisional
Probab=98.83 E-value=9.9e-10 Score=118.25 Aligned_cols=60 Identities=23% Similarity=0.380 Sum_probs=51.2
Q ss_pred CCceEEEEcCeEeecccccccCCCchhHhhhhcCCccchhhhcccCCCCCcccccCceeeeccc
Q psy2044 2 SQEFLIEHKGQKHNVAKFLKFHPGGSNTIKYFKNGDITEQLIKTHHSPSAYGHHVPRKHNVAKF 65 (452)
Q Consensus 2 ~~~~wv~i~gkvYDvT~fl~~HPGG~~~L~~~aGkDvT~~eva~Hhs~~~wv~i~lkvYdVg~f 65 (452)
++|||++|+|||||+|+|+++||||+ +|+.++|+|+|+.+.+.| +++++ ..++.|.||+.
T Consensus 117 ~~d~Wivi~gkVYDvT~fl~~HPGG~-~i~~~aG~DaT~~F~~~H-~~~~~--~~l~~~~IG~l 176 (526)
T PLN03198 117 PNDCWIVIKNKVYDVSDFAAEHPGGS-VISTYFGRDGTDAFSSFH-AASTW--KILQDFYIGDV 176 (526)
T ss_pred CCCeEEEECCEEEecHHHHHhCCCch-HHHHhcCCcHhHHHHHhc-CHHHH--HHHhhCcceec
Confidence 57999999999999999999999998 788999999999998875 42332 35788999985
No 19
>PLN03199 delta6-acyl-lipid desaturase-like protein; Provisional
Probab=98.76 E-value=2.8e-09 Score=114.04 Aligned_cols=60 Identities=22% Similarity=0.428 Sum_probs=49.9
Q ss_pred CCceEEEEcCeEeecccccccCCCchhHhhhhcCCccchhhhcccCCCCCcccccCceeeecccc
Q psy2044 2 SQEFLIEHKGQKHNVAKFLKFHPGGSNTIKYFKNGDITEQLIKTHHSPSAYGHHVPRKHNVAKFL 66 (452)
Q Consensus 2 ~~~~wv~i~gkvYDvT~fl~~HPGG~~~L~~~aGkDvT~~eva~Hhs~~~wv~i~lkvYdVg~fl 66 (452)
++|||++|+|+|||||+|+ +||||+ +|..++|+|+|+++.+.| +++ ....++.|.||+..
T Consensus 37 ~~~~wi~i~g~vYDvt~f~-~HPGG~-~i~~~aG~DaT~~F~~~H-~~~--~~~~l~~~~iG~l~ 96 (485)
T PLN03199 37 PDDAWIIHQNKVYDVSNWH-DHPGGA-VIFTHAGDDMTDIFAAFH-APG--SQALMKKFYIGDLI 96 (485)
T ss_pred CCCeEEEECCEEEcCCCcC-cCCCch-HHHhhCCCChhHHHHHhc-CHH--HHHHHHhccccccc
Confidence 4799999999999999997 899998 678899999999988765 422 23467889999853
No 20
>PLN02869 fatty aldehyde decarbonylase
Probab=98.75 E-value=3.2e-08 Score=106.16 Aligned_cols=134 Identities=20% Similarity=0.248 Sum_probs=75.0
Q ss_pred HHHHHHHHHHHHHHHhhhhcccCCCCCChHHHHHHHHhhcCCCCCCC-CCCccccChHH-HHHHHHHHHH-HHHHhhcCC
Q psy2044 296 YICGLLLWPLLEYTIHRWIFHLKPPDNSPLLITLHFGLHGLHHKVPF-DDGRLLFPPVP-AGILMYLGYS-LATSLFIPT 372 (452)
Q Consensus 296 f~~G~l~~~~~EY~~HR~lfH~~~~~~~~~~~~l~~~~H~~HH~~p~-d~~rlvfpP~~-~~~~~~~~~~-l~~~~~~~~ 372 (452)
+++=.+..++.-|++|| ++|.. .+..+.|..||.... +...-+++|+. .+...+.+.. ++..++ ..
T Consensus 131 ~Llhv~~~Df~fYW~HR-llH~~---------~LYwr~HkvHHss~~~~P~Ts~~HP~~E~L~y~ll~~IPLllli~-~g 199 (620)
T PLN02869 131 ILLHMGPVEFLYYWLHR-ALHHH---------YLYSRYHSHHHSSIVTEPITSVIHPFAEHIAYFLLFAIPLLTTIF-TG 199 (620)
T ss_pred HHHHHHHHHHHHHHHHH-HhhhH---------HHHHHHHhhccCCCCCCchhhhcCcHHHHHHHHHHHHHHHHHHhh-cc
Confidence 34444456999999999 57743 233588999999732 22223466653 2222211111 111111 11
Q ss_pred chhHHHHHHHHHHHHHHHHH-HHHhccCCC--CCc-----hHHHHH---HHHHhhcccCCCCCCcceeccchhhhcCccc
Q psy2044 373 WNAPLVLAGVITGYLTYDLI-HFYLHYGSP--HEG-----SYLYNM---KRYHNQHHFAHYESGFGISSKFWDHIFGTLI 441 (452)
Q Consensus 373 ~~~~~~~~g~~~gyl~Yd~~-Hy~~H~~~~--~~~-----~~~~~l---k~~H~~HH~~~~~~nfGVts~~wD~vFGT~~ 441 (452)
. .....+.+|+.|... ....|.+.. |.. ++++++ -++|..||-+ .++|||...++||++|||+.
T Consensus 200 ~----~hi~t~~~yli~~~f~~~~gHSN~El~P~~~~~~~ppLkyll~TPsfHdlHHs~-fd~NYGlfF~~WDrLFGT~d 274 (620)
T PLN02869 200 T----ASIAAFFGYISYIDFMNNMGHCNFELIPKWLFSIFPPLKYLMYTPSYHSLHHTQ-FRTNYSLFMPIYDYIYGTMD 274 (620)
T ss_pred c----chHHHHHHHHHHHHHHhcccccCccccccchhccCCcchheecCchHHhHHhcc-CCcCcccchHHHHhccCCCC
Confidence 0 112234555555543 344554421 111 223332 4799999964 68999999999999999996
Q ss_pred cccc
Q psy2044 442 VLRK 445 (452)
Q Consensus 442 ~~~~ 445 (452)
++.+
T Consensus 275 ~~s~ 278 (620)
T PLN02869 275 KSSD 278 (620)
T ss_pred CCch
Confidence 5433
No 21
>PLN02252 nitrate reductase [NADPH]
Probab=98.68 E-value=5.1e-09 Score=118.93 Aligned_cols=64 Identities=25% Similarity=0.380 Sum_probs=54.4
Q ss_pred CCceEEEEcCeEeecccccccCCCchhHhhhhcCCccchhhhcccCCCCCcccccCceeeecccccc
Q psy2044 2 SQEFLIEHKGQKHNVAKFLKFHPGGSNTIKYFKNGDITEQLIKTHHSPSAYGHHVPRKHNVAKFLKF 68 (452)
Q Consensus 2 ~~~~wv~i~gkvYDvT~fl~~HPGG~~~L~~~aGkDvT~~eva~Hhs~~~wv~i~lkvYdVg~fl~~ 68 (452)
.++||++|+|+|||+|+|++.||||+++|+.++|+|+|++|.+.| ++.+ ..+++.|.||+....
T Consensus 531 ~~~~Wivi~g~VYDvT~fl~~HPGG~~~I~~~aG~DaT~~F~~~H-s~~a--~~~L~~~~IG~l~~~ 594 (888)
T PLN02252 531 EDSCWIVVHGHVYDCTRFLKDHPGGADSILINAGTDCTEEFDAIH-SDKA--KKMLEDYRIGELVTT 594 (888)
T ss_pred CCCeEEEECCEEEeCHHHHHHCCChHHHHHhhcCCCcHHHHhhhh-hHHH--HHHHHhCcCCccccc
Confidence 468999999999999999999999999999999999999998865 4333 347788999996433
No 22
>KOG4576|consensus
Probab=98.58 E-value=1.8e-08 Score=88.30 Aligned_cols=75 Identities=25% Similarity=0.471 Sum_probs=59.8
Q ss_pred ccchhhhcccCC--CCCcccccCceeeecccccccCCCCccccccccccccccc---cccCCCHhHHHhhhhcccccCCC
Q psy2044 37 DITEQLIKTHHS--PSAYGHHVPRKHNVAKFLKFHPGGSNTIKYFKNGDITEQL---IKTHHSPSAYELLKDYRVSDDNP 111 (452)
Q Consensus 37 DvT~~eva~Hhs--~~~wv~i~lkvYdVg~fl~~HPGG~~~il~~aGkD~t~~f---~~~~Hs~~a~~~L~~~~iG~l~~ 111 (452)
.++.+|+++|++ +.-||.+...|||||+|.+.|||| +.|+..||..+..-. .+ .....+.++|+.|+||+|++
T Consensus 81 iY~~EEV~~H~s~e~rIWVTyg~gVyDVTdFv~~HPGG-dKillAAG~a~dPFWalY~q-Hnt~eVlElLegyrIG~L~~ 158 (167)
T KOG4576|consen 81 IYTKEEVSSHTSPETRIWVTYGSGVYDVTDFVDLHPGG-DKILLAAGGALDPFWALYAQ-HNTSEVLELLEGYRIGELNP 158 (167)
T ss_pred chhHHHHHhcCCCccceEEEecCcceeHHHHHHhCCCc-ceeeeecCCCcCcHHHHHHH-hhHHHHHHHHhhcccccCCh
Confidence 467889999988 558999999999999999999999 557777887665432 44 34456689999999999986
Q ss_pred Cc
Q psy2044 112 QE 113 (452)
Q Consensus 112 ~e 113 (452)
..
T Consensus 159 ~d 160 (167)
T KOG4576|consen 159 ED 160 (167)
T ss_pred hh
Confidence 54
No 23
>KOG4232|consensus
Probab=98.56 E-value=1.6e-08 Score=104.01 Aligned_cols=46 Identities=24% Similarity=0.478 Sum_probs=42.8
Q ss_pred CCceEEEEcCeEeecccccccCCCchhHhhhhcCCccchhhhcccCC
Q psy2044 2 SQEFLIEHKGQKHNVAKFLKFHPGGSNTIKYFKNGDITEQLIKTHHS 48 (452)
Q Consensus 2 ~~~~wv~i~gkvYDvT~fl~~HPGG~~~L~~~aGkDvT~~eva~Hhs 48 (452)
.++.|++||| |||+|+|+++||||+.+|..++|+|+|++|.+.|-.
T Consensus 21 ~~~~W~~id~-vYd~s~~~~~HPGG~~~I~~~~g~DaTdaF~AfH~~ 66 (430)
T KOG4232|consen 21 AEGLWLVIDG-VYDISDWIKRHPGGSRVIEHYAGQDATDAFEAFHPG 66 (430)
T ss_pred CCceEEEeec-cccHHHHHHhCCCchhHHHHhcCCccchHHHHhCCC
Confidence 5789999999 999999999999999999999999999999997643
No 24
>KOG4232|consensus
Probab=98.55 E-value=2e-08 Score=103.26 Aligned_cols=79 Identities=19% Similarity=0.249 Sum_probs=65.9
Q ss_pred ccchhhhcccCC-CCCcccccCceeeecccccccCCCCccccccccccccccccc-cCCCHhHHHhhhhcccccCCCCcc
Q psy2044 37 DITEQLIKTHHS-PSAYGHHVPRKHNVAKFLKFHPGGSNTIKYFKNGDITEQLIK-THHSPSAYELLKDYRVSDDNPQEY 114 (452)
Q Consensus 37 DvT~~eva~Hhs-~~~wv~i~lkvYdVg~fl~~HPGG~~~il~~aGkD~t~~f~~-~~Hs~~a~~~L~~~~iG~l~~~e~ 114 (452)
..|.++.++|+. ++.|.++++ ||||+++++.||||+..|..++|+|+|++|.. |.-+..+++.|+...+|+..++++
T Consensus 9 ~~~we~~~~~~~~~~~W~~id~-vYd~s~~~~~HPGG~~~I~~~~g~DaTdaF~AfH~~~~~~~~~l~~l~~~~~~pe~~ 87 (430)
T KOG4232|consen 9 TFSWEGKRKHDKAEGLWLVIDG-VYDISDWIKRHPGGSRVIEHYAGQDATDAFEAFHPGTAFAYKHLKPLLIGELSPEIP 87 (430)
T ss_pred eeeccchhhccCCCceEEEeec-cccHHHHHHhCCCchhHHHHhcCCccchHHHHhCCChHHHHHHHHHHHcCCcCcccc
Confidence 345566777877 899999999 99999999999999999999999999999954 344444788999999999877665
Q ss_pred cc
Q psy2044 115 IR 116 (452)
Q Consensus 115 ~~ 116 (452)
..
T Consensus 88 ~~ 89 (430)
T KOG4232|consen 88 SL 89 (430)
T ss_pred cc
Confidence 44
No 25
>PLN02601 beta-carotene hydroxylase
Probab=98.31 E-value=5.4e-06 Score=80.78 Aligned_cols=118 Identities=19% Similarity=0.136 Sum_probs=69.4
Q ss_pred HHHHHHHHHHHHHHHhhhhcccCCCCCChHHHHHHHHhhcCCCCCCCCCC----ccccChHHHHHHHHHHHHHHHHhhcC
Q psy2044 296 YICGLLLWPLLEYTIHRWIFHLKPPDNSPLLITLHFGLHGLHHKVPFDDG----RLLFPPVPAGILMYLGYSLATSLFIP 371 (452)
Q Consensus 296 f~~G~l~~~~~EY~~HR~lfH~~~~~~~~~~~~l~~~~H~~HH~~p~d~~----rlvfpP~~~~~~~~~~~~l~~~~~~~ 371 (452)
++.+++..-++-|+.||+++|... +.+|..||.. .+.. .+ |--+-+ +.+..+.. ++....+
T Consensus 140 ~lgtfvgMEf~Aw~aHKYvMHG~L-----------W~lH~sHH~P-r~g~FE~NDl-FaVifA-vpAIaL~~-~G~~~~g 204 (303)
T PLN02601 140 SVGAAVGMEFWARWAHRALWHDSL-----------WNMHESHHKP-REGAFELNDV-FAIVNA-VPAIGLLY-YGFFNKG 204 (303)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcc-----------hhhhhhcCCC-CCCCcccccc-hhhhhH-HHHHHHHH-Hhhcccc
Confidence 566777778888889999999542 3678888853 3321 12 211111 11111111 1111001
Q ss_pred --CchhHHHHHHHHHHHHHHHHHHHHh-ccCCC----CCchHHHHHHHHHhhccc-CCCCCCcce
Q psy2044 372 --TWNAPLVLAGVITGYLTYDLIHFYL-HYGSP----HEGSYLYNMKRYHNQHHF-AHYESGFGI 428 (452)
Q Consensus 372 --~~~~~~~~~g~~~gyl~Yd~~Hy~~-H~~~~----~~~~~~~~lk~~H~~HH~-~~~~~nfGV 428 (452)
+.....+.+|+.++.++|-++|=.+ |.+-| ++.+|+|++++-|.+||- |.....||.
T Consensus 205 ~~p~~~fgiGlGITlYGiaYffVHDgLVHqRfp~~~~a~~~Y~rrl~~AHklHHa~Ke~Gv~FGf 269 (303)
T PLN02601 205 LVPGLCFGAGLGITVFGMAYMFVHDGLVHKRFPVGPIANVPYLRKVAAAHQLHHTDKFKGVPYGL 269 (303)
T ss_pred ccHHHHHHHHHhHHHHHHHHHHHhhhhhccccccCCCCCCHHHHHHHHHHHhhccCCcCCccceE
Confidence 1233445688888888888888765 44322 456899999999999996 223446664
No 26
>KOG0874|consensus
Probab=98.25 E-value=5.8e-07 Score=84.94 Aligned_cols=192 Identities=23% Similarity=0.363 Sum_probs=104.8
Q ss_pred HHHHhhhhhHHHHhhhhccccccCCCCcchh---hhhhhhhhhhhhHHHHHHHHHHHHhhhhhcccccCccchhhhHHHH
Q psy2044 215 YYICGLLLWPLLEYTIHRWIFHLKPNNSRMQ---MTWKLLRYYTRLFVYLVLLVLYLWFTTVATVGVHDTSVDISLEASW 291 (452)
Q Consensus 215 ~~~~g~~~w~~~ey~~hr~~fh~~~~~~~~~---~~~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 291 (452)
..+.|+++=.+.|=++---+||.++...... .++.+..|..|..++.+. +.++. +..
T Consensus 62 aVvk~VllQq~~q~iVgiil~~feg~~~~~~ea~qm~k~~a~~~r~ip~~a~---~~~y~-----------------~~v 121 (287)
T KOG0874|consen 62 AVVKGVLLQQIIQAIVGIILFHFEGSDATADEAQQMWKLRADLPRIIPDAAI---YYGYS-----------------FLV 121 (287)
T ss_pred HHHHHHHHHHHHHHHHHhheEEeeCCCCChHHHHHHHHhhccccccCCchhh---hhhhH-----------------HHH
Confidence 3457777777777777777899998754432 455666666666554332 22222 112
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhcccCCCCCChHHHHHHHHhhcCCCCC--CCCCCccccChHHHHHHHHHHHHHHHHhh
Q psy2044 292 CCWYYICGLLLWPLLEYTIHRWIFHLKPPDNSPLLITLHFGLHGLHHKV--PFDDGRLLFPPVPAGILMYLGYSLATSLF 369 (452)
Q Consensus 292 ~~~~f~~G~l~~~~~EY~~HR~lfH~~~~~~~~~~~~l~~~~H~~HH~~--p~d~~rlvfpP~~~~~~~~~~~~l~~~~~ 369 (452)
.+.-|++|+++-+-..|.+||+ +|.+ +.++.-+|.+||+. |.--..|.=+|++.+++-.+...+..++.
T Consensus 122 ~A~q~f~aflviDtWQYF~HRy-mH~N--------K~LYk~iHs~HHrL~VPYayGALyNhP~EGllLDT~G~gla~l~s 192 (287)
T KOG0874|consen 122 LARQFFAAFLVIDTWQYFLHRY-MHMN--------KFLYKHIHSQHHRLIVPYAYGALYNHPVEGLLLDTIGGGLAFLLS 192 (287)
T ss_pred HHHHHHHHHHHHHhHHHHHHHH-HHHH--------HHHHHHHHhhceeEecchhhhhhhcCcchhhhhhhhchHHHHHHc
Confidence 2224778888999999999995 7865 35556789999983 54444455577776553221111111111
Q ss_pred c-CCchhHHHH--HHHHHHHHHHHHHHHHhccCCCCCchHHHHHHHHHhhcccCC-CCCCcceecc---chhhhcCcccc
Q psy2044 370 I-PTWNAPLVL--AGVITGYLTYDLIHFYLHYGSPHEGSYLYNMKRYHNQHHFAH-YESGFGISSK---FWDHIFGTLIV 442 (452)
Q Consensus 370 ~-~~~~~~~~~--~g~~~gyl~Yd~~Hy~~H~~~~~~~~~~~~lk~~H~~HH~~~-~~~nfGVts~---~wD~vFGT~~~ 442 (452)
+ .+.-+..++ +++= .+ --|+-.=.+..|---++..-.++|.+||-.- -.+|| |.| +||+++||+.+
T Consensus 193 glspr~aiifFtfaTiK--TV---DDHCGy~lP~dpfqm~F~NNa~YHDiHHQ~yG~k~NF--sQPFFtfWD~ilgTYmp 265 (287)
T KOG0874|consen 193 GLSPRTAIIFFTFATIK--TV---DDHCGYWLPGDPFQMFFPNNAAYHDIHHQLYGTKYNF--SQPFFTFWDRILGTYMP 265 (287)
T ss_pred CCCccceEEEEEeeeee--ee---ccccccccCCCceeEeccCCchhhhhhhhhhcccccc--CCcHHHHHHHHHhhcCC
Confidence 0 111111111 0000 00 0011111111111124556678999999432 34454 455 89999999965
No 27
>KOG0873|consensus
Probab=98.16 E-value=9.4e-06 Score=80.08 Aligned_cols=129 Identities=22% Similarity=0.210 Sum_probs=72.9
Q ss_pred HHHHHHHHHHHHHHHhhhhcccCCCCCChHHHHHHHHhhcCCCCCC--CCCCccccChHHHHHHHHHHHHHHHHhhcCCc
Q psy2044 296 YICGLLLWPLLEYTIHRWIFHLKPPDNSPLLITLHFGLHGLHHKVP--FDDGRLLFPPVPAGILMYLGYSLATSLFIPTW 373 (452)
Q Consensus 296 f~~G~l~~~~~EY~~HR~lfH~~~~~~~~~~~~l~~~~H~~HH~~p--~d~~rlvfpP~~~~~~~~~~~~l~~~~~~~~~ 373 (452)
.++-+++-++..|+.|| +||.+ .++..+|-+||... --....-.+|++.+..+++... ..+++ +.
T Consensus 124 l~i~~liEd~~fY~~HR-L~H~~---------~~Yk~iHKvHHe~taPf~~sa~YaHp~E~~~lg~~~~~-~p~~~-~~- 190 (283)
T KOG0873|consen 124 LVVFFLIEDIGFYWSHR-LFHHK---------WLYKYIHKVHHEYTAPFGLSAEYAHPLEHLFLGLGTVM-GPALL-CG- 190 (283)
T ss_pred HHHHHHHHHHHHHHHHH-Hhcch---------HHHHHHHhhhhcccCchhHhhhhcCHHHHHHcCChhhh-hhHHh-hh-
Confidence 34455677999999999 68822 23346899999963 2222234677776554322111 11111 10
Q ss_pred hhHHHHHHHHHHH--HHHHHHHHHhcc-CCCCCchHHHHHH-----HHHhhcccCCCCCCcceeccchhhhcCccccccc
Q psy2044 374 NAPLVLAGVITGY--LTYDLIHFYLHY-GSPHEGSYLYNMK-----RYHNQHHFAHYESGFGISSKFWDHIFGTLIVLRK 445 (452)
Q Consensus 374 ~~~~~~~g~~~gy--l~Yd~~Hy~~H~-~~~~~~~~~~~lk-----~~H~~HH~~~~~~nfGVts~~wD~vFGT~~~~~~ 445 (452)
-++..+ ......+...+| +++-....-|.+. ++|..||.+- ..||.-+...||+++||.+..++
T Consensus 191 -------H~~t~wiw~~l~i~~t~~~HsGY~fPwsl~~~~pfy~ga~~HD~HH~~f-~~n~~~~f~~~D~i~GTd~~~~~ 262 (283)
T KOG0873|consen 191 -------HVITLWIWIALRILETVESHSGYDFPWSLSKLIPFYGGAEHHDYHHLVF-IGNFASVFGYLDRIHGTDSTYRA 262 (283)
T ss_pred -------HHHHHHHHHHHHHHHHhhccCCCCCCccccccCcccCCCcccchhhhhc-cccccchhHHHHHHhccCccHhh
Confidence 111111 122234444444 4442212223333 8999999765 77888889999999999976544
No 28
>KOG0872|consensus
Probab=97.76 E-value=3.2e-05 Score=75.62 Aligned_cols=129 Identities=22% Similarity=0.223 Sum_probs=73.7
Q ss_pred HHHHHHHHHHHHHhhhhcccCCCCCChHHHHHHHHhhcCCCCCCCC--CCccccChHHHHHHHHHHHHHHHHhhcCCchh
Q psy2044 298 CGLLLWPLLEYTIHRWIFHLKPPDNSPLLITLHFGLHGLHHKVPFD--DGRLLFPPVPAGILMYLGYSLATSLFIPTWNA 375 (452)
Q Consensus 298 ~G~l~~~~~EY~~HR~lfH~~~~~~~~~~~~l~~~~H~~HH~~p~d--~~rlvfpP~~~~~~~~~~~~l~~~~~~~~~~~ 375 (452)
+=+++-+++-|++||.+.|. .+..++|-.||..-.- -..+.|.|+--++-+. -+.+..+++ |-- -
T Consensus 134 ~flfF~Df~iYw~HR~lH~~----------~vy~~LH~~HH~~~~~tpfAslafhpidg~lqai-p~~I~~Fi~-Plh-~ 200 (312)
T KOG0872|consen 134 LFLFFTDFGIYWAHRELHHR----------GVYKRLHKPHHIWNICTPFASLAFHPIDGFLQAI-PYHIYPFIF-PLH-K 200 (312)
T ss_pred HHHHHHHHHHHHHHHHHhhh----------HHHhhhcchhhhhhccCchhhhhcCcchhHhhhc-hhHheeeee-cch-H
Confidence 33566699999999986652 2235889999985221 1234566665544332 233333343 310 0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhccC-CCCCchHHHHHHHHHhhcccCCCCCCcceeccchhhhcCccccccc
Q psy2044 376 PLVLAGVITGYLTYDLIHFYLHYG-SPHEGSYLYNMKRYHNQHHFAHYESGFGISSKFWDHIFGTLIVLRK 445 (452)
Q Consensus 376 ~~~~~g~~~gyl~Yd~~Hy~~H~~-~~~~~~~~~~lk~~H~~HH~~~~~~nfGVts~~wD~vFGT~~~~~~ 445 (452)
....+=..+--.+=..+|-+.|.. .|+- .=..+|..||-. -++|||=-+.+|||+|||...++.
T Consensus 201 ~t~L~l~~f~~iwt~~IHd~~~~~l~~~i-----ngaahHtvHH~~-f~~NYG~~tilwDrmfgSfr~p~~ 265 (312)
T KOG0872|consen 201 VTYLSLFTFVNIWTISIHDGIYGSLNPPI-----NGAAHHTVHHTY-FDYNYGQYTILWDRMFGSFRAPDH 265 (312)
T ss_pred HHHHHHHHHHHhHheeeeccccccccCcc-----ccccccceeeee-EecCCCcEEEeHHhccCcccCccc
Confidence 111111111122222356666655 2321 113589999953 689999999999999999876543
No 29
>KOG4576|consensus
Probab=97.65 E-value=7.9e-06 Score=71.88 Aligned_cols=60 Identities=15% Similarity=0.330 Sum_probs=44.8
Q ss_pred CceEEEEcCeEeecccccccCCCchhHhhhhcCCccch--hhhcccCCCCCcccccCceeeeccc
Q psy2044 3 QEFLIEHKGQKHNVAKFLKFHPGGSNTIKYFKNGDITE--QLIKTHHSPSAYGHHVPRKHNVAKF 65 (452)
Q Consensus 3 ~~~wv~i~gkvYDvT~fl~~HPGG~~~L~~~aGkDvT~--~eva~Hhs~~~wv~i~lkvYdVg~f 65 (452)
+..||++...|||||+|++.||||.++| -.+|..+.. ...+.||. .-|...+..|.||+.
T Consensus 95 ~rIWVTyg~gVyDVTdFv~~HPGGdKil-lAAG~a~dPFWalY~qHnt--~eVlElLegyrIG~L 156 (167)
T KOG4576|consen 95 TRIWVTYGSGVYDVTDFVDLHPGGDKIL-LAAGGALDPFWALYAQHNT--SEVLELLEGYRIGEL 156 (167)
T ss_pred cceEEEecCcceeHHHHHHhCCCcceee-eecCCCcCcHHHHHHHhhH--HHHHHHHhhcccccC
Confidence 4789999999999999999999997765 456655443 24566765 234456788999984
No 30
>PF04116 FA_hydroxylase: Fatty acid hydroxylase superfamily; InterPro: IPR006694 This superfamily includes fatty acid and carotene hydroxylases and sterol desaturases. Beta-carotene hydroxylase is involved in zeaxanthin synthesis by hydroxylating beta-carotene, but the enzyme may be involved in other pathways []. This family includes C-5 sterol desaturase and C-4 sterol methyl oxidase. Members of this family are involved in cholesterol biosynthesis and biosynthesis a plant cuticular wax. These enzymes contain two copies of a HXHH motif. Members of this family are integral membrane proteins.; GO: 0005506 iron ion binding, 0016491 oxidoreductase activity, 0006633 fatty acid biosynthetic process, 0055114 oxidation-reduction process
Probab=97.44 E-value=0.00042 Score=58.79 Aligned_cols=108 Identities=23% Similarity=0.358 Sum_probs=55.9
Q ss_pred HHHhhhhhHHHHhhhhccccccCCCCcchhhhh------hhhhhhhhhHHHHHHHHHHHHhhhhhcccccCccchhhhHH
Q psy2044 216 YICGLLLWPLLEYTIHRWIFHLKPNNSRMQMTW------KLLRYYTRLFVYLVLLVLYLWFTTVATVGVHDTSVDISLEA 289 (452)
Q Consensus 216 ~~~g~~~w~~~ey~~hr~~fh~~~~~~~~~~~~------~~~~~~~rl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 289 (452)
|++|++++.+.||++|| ++|..|. ...+. +.|+........|+..++.......... .. .
T Consensus 1 f~~~~l~~d~~~Y~~HR-l~H~~~~---l~~~H~~HH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~--~ 66 (114)
T PF04116_consen 1 FLLGFLLWDFWEYWMHR-LLHKIPF---LWRIHKVHHSPKNPTPLSAFRFHPLEALLLALLPLLLPL--------LL--L 66 (114)
T ss_pred CeeeHHHHHHHHHHHHH-HHhcCch---HHHHHHHHhCCcccCchHHHHcChHHHHHHHHHHHHHHH--------HH--H
Confidence 35788999999999999 9993222 21122 2344444444555554442222111000 00 0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhcccCCCCCChHHHHHHHHhhcCCCC
Q psy2044 290 SWCCWYYICGLLLWPLLEYTIHRWIFHLKPPDNSPLLITLHFGLHGLHHK 339 (452)
Q Consensus 290 ~~~~~~f~~G~l~~~~~EY~~HR~lfH~~~~~~~~~~~~l~~~~H~~HH~ 339 (452)
...+..+.+|.++..+.+-..|--+.+..++ ..++.+.. -+.|..||+
T Consensus 67 ~~~~~~~~~~~~~~~~~~~~~H~~~~~~~~~-~~~~~~~~-~~~H~~HH~ 114 (114)
T PF04116_consen 67 PFHALAFLLGIALFYLWYIFIHSGYHHRFPP-RLRYLFVT-PRHHDLHHS 114 (114)
T ss_pred hHhHHHHHHHHHHHHHHHHHhhcCccCCCCC-cchhHhcC-HHHHHhhCc
Confidence 1111135566666677777777765222222 23343333 378999995
No 31
>PF10520 Kua-UEV1_localn: Kua-ubiquitin conjugating enzyme hybrid localisation domain; InterPro: IPR019547 This entry represents part of the transcript of the fusion of two genes, the UEV1. UEV1 is an enzymatically inactive variant of the E2 ubiquitin-conjugating enzymes that regulate non-canonical elongation of ubiquitin chains, and Kua, an otherwise unknown gene. UEV1A is a nuclear protein, whereas both Kua and Kua-UEV localise to cytoplasmic structures, indicating that the addition of a Kua domain to UEV confers new biological properties. UEV1-Kua carries the B domain with its characteristic double histidine motif, and it is probably this domain which determines the cytoplasmic localisation. It is postulated that this hybrid transcript could preferentially direct the variant polyubiquitination of substrates closely associated with the cytoplasmic face of the endoplasmic reticulum, possibly, although not necessarily, in conjunction with membrane-bound ubiquitin-conjugating enzymes [].
Probab=97.19 E-value=0.0015 Score=61.07 Aligned_cols=62 Identities=13% Similarity=0.157 Sum_probs=47.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhccCCCCCchHHHHH--------HHHHhhcccCCCCCCcceeccchhhhcCc
Q psy2044 377 LVLAGVITGYLTYDLIHFYLHYGSPHEGSYLYNM--------KRYHNQHHFAHYESGFGISSKFWDHIFGT 439 (452)
Q Consensus 377 ~~~~g~~~gyl~Yd~~Hy~~H~~~~~~~~~~~~l--------k~~H~~HH~~~~~~nfGVts~~wD~vFGT 439 (452)
++...+.+.-.+=..+|-+.|.... ++++.+.| |++|.+||-...+.||.|++.+|+.++..
T Consensus 86 ~f~~~~~~~v~~tnq~HkWsH~~~~-~P~~V~~LQ~~gillsr~~H~~HH~aPh~~~YCI~tGw~N~~Ld~ 155 (178)
T PF10520_consen 86 CFLFSFAFFVAFTNQFHKWSHTYKS-LPPWVRFLQDAGILLSRKHHRIHHVAPHDTNYCITTGWLNPPLDK 155 (178)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCC-CCHHHHHHHHCCcccCchhhhccccCcccCCeEeecccchHHHHH
Confidence 3444445555556679999999544 45677776 58999999888999999999999988754
No 32
>KOG3011|consensus
Probab=96.47 E-value=0.016 Score=56.34 Aligned_cols=133 Identities=19% Similarity=0.184 Sum_probs=79.6
Q ss_pred HHHHHHHHHHHHHHHHhhhhcccCCC----CCChHH-HHHHHHhhcCCCCCCCCCCcccc---ChHHHHHHHHHHHHHHH
Q psy2044 295 YYICGLLLWPLLEYTIHRWIFHLKPP----DNSPLL-ITLHFGLHGLHHKVPFDDGRLLF---PPVPAGILMYLGYSLAT 366 (452)
Q Consensus 295 ~f~~G~l~~~~~EY~~HR~lfH~~~~----~~~~~~-~~l~~~~H~~HH~~p~d~~rlvf---pP~~~~~~~~~~~~l~~ 366 (452)
+..+|++..+|.-=+ .|+... -+.|+. +. |.--..||++|..-.|--| +|..+.+.-.... -..
T Consensus 112 a~~aG~i~AD~~SGl-----~HWaaD~~Gsv~tP~vG~~--f~rfreHH~dP~tITr~~f~~~~~ll~~a~~f~v~-~~d 183 (293)
T KOG3011|consen 112 AAYAGYITADLGSGV-----YHWAADNYGSVSTPWVGRQ--FERFQEHHKDPWTITRRQFANNLHLLARAYTFIVL-PLD 183 (293)
T ss_pred HHHHHHHHHhhhcce-----eEeeccccCccccchhHHH--HHHHHhccCCcceeeHHHHhhhhHHHHHhheeEec-CHH
Confidence 457888888876543 444321 123443 43 3448999999987766544 2222221111000 011
Q ss_pred HhhcCCchhHHHHHHHHHHHHHHHHHHHHhccCCCCCchHHHHH--------HHHHhhcccCCCCCCcceeccchhhhc
Q psy2044 367 SLFIPTWNAPLVLAGVITGYLTYDLIHFYLHYGSPHEGSYLYNM--------KRYHNQHHFAHYESGFGISSKFWDHIF 437 (452)
Q Consensus 367 ~~~~~~~~~~~~~~g~~~gyl~Yd~~Hy~~H~~~~~~~~~~~~l--------k~~H~~HH~~~~~~nfGVts~~wD~vF 437 (452)
++. ....--+++..+.+..++-.-+|-+.|.... .++|.-.| |++|+.||-..++.||.|||-+|.++.
T Consensus 184 ~~~-q~~~~h~fV~~~~i~v~~tnQiHkWsHTy~g-LP~wVv~LQd~hlilpRkhH~iHH~aPh~~yyCI~tGw~N~~L 260 (293)
T KOG3011|consen 184 LAF-QDPVFHGFVFLFAICVLFTNQIHKWSHTYSG-LPPWVVLLQDMHLILPRKHHRIHHVAPHNTYYCIVSGWWNWVL 260 (293)
T ss_pred HHh-hcccHHHHHHHHHHHHHHHHHHHHHHhhhcc-CchHHHHHhhcceecccccccccccCccccceEEeechhhchH
Confidence 122 2222334555555666666779999996543 23454333 799999999889999999999998874
No 33
>COG4892 Predicted heme/steroid binding protein [General function prediction only]
Probab=95.27 E-value=0.011 Score=46.73 Aligned_cols=72 Identities=14% Similarity=0.031 Sum_probs=48.7
Q ss_pred CccchhhhcccCC--CCCcccccCceeeecccccccCCCCcccccccccccccccc-ccCCCHhHHHhhhhc-ccccCCC
Q psy2044 36 GDITEQLIKTHHS--PSAYGHHVPRKHNVAKFLKFHPGGSNTIKYFKNGDITEQLI-KTHHSPSAYELLKDY-RVSDDNP 111 (452)
Q Consensus 36 kDvT~~eva~Hhs--~~~wv~i~lkvYdVg~fl~~HPGG~~~il~~aGkD~t~~f~-~~~Hs~~a~~~L~~~-~iG~l~~ 111 (452)
+.+|.+|..+-+. ..+++.+++.||||+.- ..=-+|.-.-+..+|+|+++.|+ .+.|-+ +.|+++ .+|.|..
T Consensus 2 refTLEELs~ynG~nGpaYiA~~G~VYDvS~s-~~W~dGtHqglhsaG~DLs~~~~~~aphg~---eil~~~PvVG~L~k 77 (81)
T COG4892 2 REFTLEELSKYNGENGPAYIAVNGTVYDVSLS-PSWGDGTHQGLHSAGKDLSSEFNSCAPHGM---EILTSLPVVGALIK 77 (81)
T ss_pred ceecHHHHHhhcCCCCCeEEEECCEEEeeccC-cccCCCccccccccchhHHHHHhhcCCchh---HHHhcCchhheeec
Confidence 4567777776544 56899999999999883 22233444444558999999995 555544 456665 6777753
No 34
>PRK07424 bifunctional sterol desaturase/short chain dehydrogenase; Validated
Probab=95.15 E-value=0.03 Score=59.10 Aligned_cols=32 Identities=25% Similarity=0.479 Sum_probs=29.1
Q ss_pred HHHHhhcccCCCCCCcceeccchhhhcCcccc
Q psy2044 411 KRYHNQHHFAHYESGFGISSKFWDHIFGTLIV 442 (452)
Q Consensus 411 k~~H~~HH~~~~~~nfGVts~~wD~vFGT~~~ 442 (452)
|.+|-+|||.+.+.-|+=+.++.|+..||...
T Consensus 144 ~~~h~rh~~~~~~~~~~~~~~~~d~~~~ta~s 175 (406)
T PRK07424 144 RPYHWRHHFDNQNAYYCGTFTLVDKLMGTALS 175 (406)
T ss_pred CceeEEEEeccccceeeeeEEEeehhcCcccC
Confidence 48999999999999999999999999999764
No 35
>PLN02601 beta-carotene hydroxylase
Probab=93.63 E-value=0.69 Score=45.84 Aligned_cols=45 Identities=24% Similarity=0.341 Sum_probs=38.1
Q ss_pred HHHHHHHHHHHHHHHHhhhhcccC----CCCCChHHHHHHHHhhcCCCCC
Q psy2044 295 YYICGLLLWPLLEYTIHRWIFHLK----PPDNSPLLITLHFGLHGLHHKV 340 (452)
Q Consensus 295 ~f~~G~l~~~~~EY~~HR~lfH~~----~~~~~~~~~~l~~~~H~~HH~~ 340 (452)
+.-+|+.+|.+.-.++|-.+.|.+ +..++++.+++. +-|.+||..
T Consensus 212 giGlGITlYGiaYffVHDgLVHqRfp~~~~a~~~Y~rrl~-~AHklHHa~ 260 (303)
T PLN02601 212 GAGLGITVFGMAYMFVHDGLVHKRFPVGPIANVPYLRKVA-AAHQLHHTD 260 (303)
T ss_pred HHHHhHHHHHHHHHHHhhhhhccccccCCCCCCHHHHHHH-HHHHhhccC
Confidence 357999999999999999999988 334678888885 899999994
No 36
>COG4892 Predicted heme/steroid binding protein [General function prediction only]
Probab=86.73 E-value=0.72 Score=36.61 Aligned_cols=39 Identities=15% Similarity=0.108 Sum_probs=28.1
Q ss_pred CCceEEEEcCeEeeccccc----ccCCCchhHhhhhcCCccchhhhcc
Q psy2044 2 SQEFLIEHKGQKHNVAKFL----KFHPGGSNTIKYFKNGDITEQLIKT 45 (452)
Q Consensus 2 ~~~~wv~i~gkvYDvT~fl----~~HPGG~~~L~~~aGkDvT~~eva~ 45 (452)
+++..|.++|+||||+.=- ..|.|+- -+|+|.|+++...
T Consensus 16 nGpaYiA~~G~VYDvS~s~~W~dGtHqglh-----saG~DLs~~~~~~ 58 (81)
T COG4892 16 NGPAYIAVNGTVYDVSLSPSWGDGTHQGLH-----SAGKDLSSEFNSC 58 (81)
T ss_pred CCCeEEEECCEEEeeccCcccCCCcccccc-----ccchhHHHHHhhc
Confidence 4578999999999997532 2465543 3688988886543
No 37
>cd03512 Alkane-hydroxylase Alkane hydroxylase is a bacterial, integral-membrane di-iron enzyme that shares a requirement for iron and oxygen for activity similar to that of the non-heme integral-membrane acyl coenzyme A (CoA) desaturases and acyl lipid desaturases. The alk genes in Pseudomonas oleovorans encode conversion of alkanes to acyl CoA. The alkane omega-hydroxylase (AlkB) system is responsible for the initial oxidation of inactivated alkanes. It is a three-component system comprising a soluble NADH-rubredoxin reductase (AlkT), a soluble rubredoxin (AlkG), and the integral membrane oxygenase (AlkB). AlkB utilizes the oxygen rebound mechanism to hydroxylate alkanes. This mechanism involves homolytic cleavage of the C-H bond by an electrophilic metal-oxo intermediate to generate a substrate-based radical. As with other members of this superfamily, this domain family has extensive hydrophobic regions that would be capable of spanning the membrane bilayer at least twice. The active
Probab=82.01 E-value=45 Score=34.00 Aligned_cols=24 Identities=21% Similarity=0.430 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhccC
Q psy2044 376 PLVLAGVITGYLTYDLIHFYLHYG 399 (452)
Q Consensus 376 ~~~~~g~~~gyl~Yd~~Hy~~H~~ 399 (452)
..+++-.+.|...-|.+=|+.|.+
T Consensus 206 ~~~l~~~~~g~~~l~~~nY~EHyG 229 (314)
T cd03512 206 LFLLIQAFYAKSLLELVNYIEHYG 229 (314)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcC
Confidence 344455666777888888888876
No 38
>KOG1110|consensus
Probab=81.69 E-value=1.5 Score=41.01 Aligned_cols=39 Identities=23% Similarity=0.456 Sum_probs=31.5
Q ss_pred CceEEEEcCeEeecccccc-cCCCchhHhhhhcCCccchhhh
Q psy2044 3 QEFLIEHKGQKHNVAKFLK-FHPGGSNTIKYFKNGDITEQLI 43 (452)
Q Consensus 3 ~~~wv~i~gkvYDvT~fl~-~HPGG~~~L~~~aGkDvT~~ev 43 (452)
.+..+.|+|+|||||.=.. .=|||.-- .+||+|+|...-
T Consensus 73 ~~Il~AI~G~VYDVT~Gr~FYGp~GpY~--~fAG~DASR~La 112 (183)
T KOG1110|consen 73 KPILLAINGKVYDVTRGREFYGPGGPYS--LFAGKDASRGLA 112 (183)
T ss_pred CceEEEecceEEEecCCccccCCCCCch--hhcccchHHHHH
Confidence 4678899999999987665 47889874 589999998743
No 39
>PF14901 Jiv90: Cleavage inducing molecular chaperone
Probab=56.50 E-value=6 Score=33.30 Aligned_cols=14 Identities=7% Similarity=0.292 Sum_probs=12.0
Q ss_pred EcCeEeeccccccc
Q psy2044 9 HKGQKHNVAKFLKF 22 (452)
Q Consensus 9 i~gkvYDvT~fl~~ 22 (452)
.+|+|||||+|..=
T Consensus 61 ~~g~VyDiTeWA~C 74 (94)
T PF14901_consen 61 MDGKVYDITEWATC 74 (94)
T ss_pred cCceEEehhhhhhc
Confidence 59999999998753
No 40
>COG3000 ERG3 Sterol desaturase [Lipid metabolism]
Probab=55.24 E-value=37 Score=33.74 Aligned_cols=58 Identities=12% Similarity=0.114 Sum_probs=36.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhccCCCCCchHHHHHHHHHhhcccCCCCCCccee-ccchhhhc
Q psy2044 376 PLVLAGVITGYLTYDLIHFYLHYGSPHEGSYLYNMKRYHNQHHFAHYESGFGIS-SKFWDHIF 437 (452)
Q Consensus 376 ~~~~~g~~~gyl~Yd~~Hy~~H~~~~~~~~~~~~lk~~H~~HH~~~~~~nfGVt-s~~wD~vF 437 (452)
..+....+++.++.|...|+.|.-... .+.+|+-|..||....-..++.. ....|-++
T Consensus 93 ~~~~l~~~~~~~~~D~~~Y~~HR~~H~----~~~~w~~H~~HH~~~~~~~~t~~~~hp~e~ll 151 (271)
T COG3000 93 LPFALQLLLAFLFLDLGYYWAHRLLHR----VPLLWAFHKVHHSSEVPDPLTALRFHPLEILL 151 (271)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhh----hHHHHHHHHhhcCcccCCchhhhhcChHHHHH
Confidence 455677778888888888888875432 35677999999975433333322 23444443
No 41
>PRK13743 conjugal transfer protein TrbF; Provisional
Probab=52.15 E-value=34 Score=30.48 Aligned_cols=13 Identities=23% Similarity=0.912 Sum_probs=10.0
Q ss_pred hHHHHhhhhhHHH
Q psy2044 214 WYYICGLLLWPLL 226 (452)
Q Consensus 214 ~~~~~g~~~w~~~ 226 (452)
.++.+|+++|+.+
T Consensus 46 VFl~AG~vLw~vM 58 (141)
T PRK13743 46 VFLTAGIVLWVIM 58 (141)
T ss_pred HHHHhhHHHHHHH
Confidence 3566899999876
No 42
>cd03509 DesA_FADS-like Fatty acid desaturase protein family subgroup, a delta-12 acyl-lipid desaturase-like, DesA-like, yet uncharacterized subgroup of membrane fatty acid desaturase proteins found in alpha-, beta-, and gamma-proteobacteria. Sequences of this domain family appear to be structurally related to membrane fatty acid desaturases and alkane hydroxylases. They all share in common extensive hydrophobic regions that would be capable of spanning the membrane bilayer at least twice. Comparison of these sequences also reveals three regions of conserved histidine cluster motifs that contain eight histidine residues: HXXXH, HXXHH, and HXXHH. These histidine residues are reported to be catalytically essential and proposed to be the ligands for the iron atoms contained within homologs, stearoyl CoA desaturase and alkane hydroxylase.
Probab=47.54 E-value=70 Score=32.20 Aligned_cols=43 Identities=21% Similarity=0.165 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhccCCCCCchHH---------------HHHHHHHhhccc
Q psy2044 376 PLVLAGVITGYLTYDLIHFYLHYGSPHEGSYL---------------YNMKRYHNQHHF 419 (452)
Q Consensus 376 ~~~~~g~~~gyl~Yd~~Hy~~H~~~~~~~~~~---------------~~lk~~H~~HH~ 419 (452)
.+++++++++.+.+-..|-+.|...-+ +++. ...|..|..||-
T Consensus 29 ~~~~~~~~~~~~~~~l~Hd~~Hg~~~~-~~~~N~~~g~~~~~l~~p~~~wr~~H~~HH~ 86 (288)
T cd03509 29 LATLLLIPLAALHSSLQHELLHGHPTR-SRWVNEALGYPPLALWYPYTRYRDTHLAHHR 86 (288)
T ss_pred HHHHHHHHHHHHHHHHHHHhhccCccc-ChHHHHHHHHHHHHHhcCHHHHHHHHHHHcC
Confidence 445555566677788899999976432 2222 345788999994
No 43
>KOG1110|consensus
Probab=45.77 E-value=14 Score=34.74 Aligned_cols=50 Identities=18% Similarity=0.227 Sum_probs=37.0
Q ss_pred ccchhhhcccCC----CCCcccccCceeeecccc-cccCCCCccccccccccccccc
Q psy2044 37 DITEQLIKTHHS----PSAYGHHVPRKHNVAKFL-KFHPGGSNTIKYFKNGDITEQL 88 (452)
Q Consensus 37 DvT~~eva~Hhs----~~~wv~i~lkvYdVg~fl-~~HPGG~~~il~~aGkD~t~~f 88 (452)
|+|.+|.++-+. ..-.+.+++++||||.-- -.-|||.-. .+||+|++...
T Consensus 57 dfT~eEL~~ydGs~~d~~Il~AI~G~VYDVT~Gr~FYGp~GpY~--~fAG~DASR~L 111 (183)
T KOG1110|consen 57 DFTVEELRQYDGSDPDKPILLAINGKVYDVTRGREFYGPGGPYS--LFAGKDASRGL 111 (183)
T ss_pred ccCHHHHHhcCCCCCCCceEEEecceEEEecCCccccCCCCCch--hhcccchHHHH
Confidence 899998877543 235677899999999842 236888753 58999998875
No 44
>cd03514 CrtR_beta-carotene-hydroxylase Beta-carotene hydroxylase (CrtR), the carotenoid zeaxanthin biosynthetic enzyme catalyzes the addition of hydroxyl groups to the beta-ionone rings of beta-carotene to form zeaxanthin and is found in bacteria and red algae. Carotenoids are important natural pigments; zeaxanthin and lutein are the only dietary carotenoids that accumulate in the macular region of the retina and lens. It is proposed that these carotenoids protect ocular tissues against photooxidative damage. CrtR does not show overall amino acid sequence similarity to the beta-carotene hydroxylases similar to CrtZ, an astaxanthin biosynthetic beta-carotene hydroxylase. However, CrtR does show sequence similarity to the green alga, Haematococcus pluvialis, beta-carotene ketolase (CrtW), which converts beta-carotene to canthaxanthin. Sequences of the CrtR_beta-carotene-hydroxylase domain family, as well as, the CrtW_beta-carotene-ketolase domain family appear to be structurally related
Probab=45.42 E-value=1e+02 Score=29.29 Aligned_cols=43 Identities=21% Similarity=0.259 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhccCCCCCchH----------------HHHHHHHHhhcccC
Q psy2044 377 LVLAGVITGYLTYDLIHFYLHYGSPHEGSY----------------LYNMKRYHNQHHFA 420 (452)
Q Consensus 377 ~~~~g~~~gyl~Yd~~Hy~~H~~~~~~~~~----------------~~~lk~~H~~HH~~ 420 (452)
+...+.++.+.++-..|=+.|..-.++ ++ ....|+.|..||..
T Consensus 27 ~~~~~~~~~~~~~~~~Hda~H~~~~~~-~~~N~~~g~~~~~~~~~~~~~w~~~H~~HH~~ 85 (207)
T cd03514 27 CFILNTLSLHLAGTVIHDASHKAASRN-RWINELIGHVSAFFLGFPFPVFRRVHMQHHAH 85 (207)
T ss_pred HHHHHHHHHHHHHHHHHHcccccccCC-ccHHHHHHHHHHHHHhCCHHHHHHHHHHHhcC
Confidence 333344455666777788887753221 12 23458999999954
No 45
>KOG1108|consensus
Probab=44.33 E-value=17 Score=35.45 Aligned_cols=58 Identities=14% Similarity=0.206 Sum_probs=40.5
Q ss_pred hhhhcCCc--cchhhhcccCC-C---CCcccccCceeeecccccccCCCCccccccccccccccc
Q psy2044 30 IKYFKNGD--ITEQLIKTHHS-P---SAYGHHVPRKHNVAKFLKFHPGGSNTIKYFKNGDITEQL 88 (452)
Q Consensus 30 L~~~aGkD--vT~~eva~Hhs-~---~~wv~i~lkvYdVg~fl~~HPGG~~~il~~aGkD~t~~f 88 (452)
+...+|.+ +|.+|.++-+. + ..+..+.+.||||+. -++|=|--..--.++|+|++.+|
T Consensus 52 v~~~ag~k~lFtpeeLa~fnGt~e~~piyLaiLGsVfdVs~-gk~hYgsG~sYnhFaGRDASrAF 115 (281)
T KOG1108|consen 52 LAFQAGDKILFTPEELAKFNGTEEGRPIYLAILGSVFDVSR-GKKHYGSGCSYNHFAGRDASRAF 115 (281)
T ss_pred hhhhcCCceeeCHHHHhhccCCCCCCceeeeeeceeeeccC-CeeeeCCCCCcccccccccchhe
Confidence 33445655 67888877654 2 246667999999998 55665543445578999999998
No 46
>PF10520 Kua-UEV1_localn: Kua-ubiquitin conjugating enzyme hybrid localisation domain; InterPro: IPR019547 This entry represents part of the transcript of the fusion of two genes, the UEV1. UEV1 is an enzymatically inactive variant of the E2 ubiquitin-conjugating enzymes that regulate non-canonical elongation of ubiquitin chains, and Kua, an otherwise unknown gene. UEV1A is a nuclear protein, whereas both Kua and Kua-UEV localise to cytoplasmic structures, indicating that the addition of a Kua domain to UEV confers new biological properties. UEV1-Kua carries the B domain with its characteristic double histidine motif, and it is probably this domain which determines the cytoplasmic localisation. It is postulated that this hybrid transcript could preferentially direct the variant polyubiquitination of substrates closely associated with the cytoplasmic face of the endoplasmic reticulum, possibly, although not necessarily, in conjunction with membrane-bound ubiquitin-conjugating enzymes [].
Probab=39.53 E-value=2.3e+02 Score=26.71 Aligned_cols=42 Identities=24% Similarity=0.450 Sum_probs=25.0
Q ss_pred HHHHHHHHHhhhhcccCCCCCChHHHHHHH-------HhhcCCCCCCCCCC
Q psy2044 302 LWPLLEYTIHRWIFHLKPPDNSPLLITLHF-------GLHGLHHKVPFDDG 345 (452)
Q Consensus 302 ~~~~~EY~~HR~lfH~~~~~~~~~~~~l~~-------~~H~~HH~~p~d~~ 345 (452)
++..+-=-+|++ =|.... ..++.+.|+- +.|+.||..|.|..
T Consensus 93 ~~v~~tnq~HkW-sH~~~~-~P~~V~~LQ~~gillsr~~H~~HH~aPh~~~ 141 (178)
T PF10520_consen 93 FFVAFTNQFHKW-SHTYKS-LPPWVRFLQDAGILLSRKHHRIHHVAPHDTN 141 (178)
T ss_pred HHHHHHHHHHHH-HcCCCC-CCHHHHHHHHCCcccCchhhhccccCcccCC
Confidence 333333345664 354222 2466666552 58999999999875
No 47
>cd03513 CrtW_beta-carotene-ketolase Beta-carotene ketolase/oxygenase (CrtW, also known as CrtO), the carotenoid astaxanthin biosynthetic enzyme, initially catalyzes the addition of two keto groups to carbons C4 and C4' of beta-carotene. Carotenoids are important natural pigments produced by many microorganisms and plants. Astaxanthin is reported to be an antioxidant, an anti-cancer agent, and an immune system stimulant. A number of bacteria and green algae can convert beta-carotene into astaxanthin by using several ketocarotenoids as intermediates and CrtW and a beta-carotene hydroxylase (CrtZ). CrtW initially converts beta-carotene to canthaxanthin via echinenone, and CrtZ initially mediates the conversion of beta-carotene to zeaxanthin via beta-cryptoxanthin. After a few more intermediates are formed, CrtW and CrtZ act in combination to produce astaxanthin. Sequences of this domain family appear to be structurally related to membrane fatty acid desaturases and alkane hydroxylases. Th
Probab=35.45 E-value=1.1e+02 Score=29.75 Aligned_cols=13 Identities=31% Similarity=0.370 Sum_probs=10.1
Q ss_pred HHHHHHHhhcccC
Q psy2044 408 YNMKRYHNQHHFA 420 (452)
Q Consensus 408 ~~lk~~H~~HH~~ 420 (452)
+..|+.|..||..
T Consensus 83 ~~~~~~H~~HH~~ 95 (225)
T cd03513 83 DRLLRKHHLHHRH 95 (225)
T ss_pred HHHHHHHHHHcCC
Confidence 3458999999965
No 48
>PRK07424 bifunctional sterol desaturase/short chain dehydrogenase; Validated
Probab=35.20 E-value=56 Score=34.62 Aligned_cols=40 Identities=23% Similarity=0.227 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHHHHHHHhccCCCCCchHHHHHHHHHhhcccC-CCCCCc
Q psy2044 379 LAGVITGYLTYDLIHFYLHYGSPHEGSYLYNMKRYHNQHHFA-HYESGF 426 (452)
Q Consensus 379 ~~g~~~gyl~Yd~~Hy~~H~~~~~~~~~~~~lk~~H~~HH~~-~~~~nf 426 (452)
++..++.=+..|..|+.+|+.. .|.|.|.-||.. +++.+|
T Consensus 13 ~~~~~~~~~~~d~~h~~~h~~~--------~l~~~h~~hh~~~~~~~~~ 53 (406)
T PRK07424 13 LGSILWVEIVRDSYHALAHQWN--------PLYRLHNWHHRVFRPDLSV 53 (406)
T ss_pred HHHHHHHHHHHHHHHHHHhhch--------HHHHHHHhHHhhcCCcCCc
Confidence 3445566677888899999964 677899999932 444444
No 49
>cd03508 Delta4-sphingolipid-FADS-like The Delta4-sphingolipid Fatty Acid Desaturase (Delta4-sphingolipid-FADS)-like CD includes the integral-membrane enzymes, dihydroceramide Delta-4 desaturase, involved in the synthesis of sphingosine; and the human membrane fatty acid (lipid) desaturase (MLD), reported to modulate biosynthesis of the epidermal growth factor receptor; and other related proteins. These proteins are found in various eukaryotes including vertebrates, higher plants, and fungi. Studies show that MLD is localized to the endoplasmic reticulum. As with other members of this superfamily, this domain family has extensive hydrophobic regions that would be capable of spanning the membrane bilayer at least twice. Comparison of sequences also reveals the existence of three regions of conserved histidine cluster motifs that contain eight histidine residues: HXXXH, HXXHH, and HXXHH. These histidine residues are reported to be catalytically essential and proposed to be the ligands for
Probab=29.14 E-value=2.3e+02 Score=28.57 Aligned_cols=44 Identities=20% Similarity=0.158 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhccCCCCC---chH------------HH-HHHHHHhhcccC
Q psy2044 377 LVLAGVITGYLTYDLIHFYLHYGSPHE---GSY------------LY-NMKRYHNQHHFA 420 (452)
Q Consensus 377 ~~~~g~~~gyl~Yd~~Hy~~H~~~~~~---~~~------------~~-~lk~~H~~HH~~ 420 (452)
+.+.|+.....++-..|=+.|..--++ +.+ .. ..|++|+.||-.
T Consensus 48 a~vi~~~~~~~l~~l~Hd~~H~~~f~~~~~N~~~g~~~~~~~g~p~~~~~r~~H~~HH~~ 107 (289)
T cd03508 48 AYFFGGTINHSLFLAIHEISHNLAFGKPLWNRLFGIFANLPIGVPYSISFKKYHLEHHRY 107 (289)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHhhcCChHHHHHHHHHHHHHhcCChhhHHHHHHHHhccC
Confidence 334444444455555677777642211 111 12 357899999954
No 50
>cd03511 Rhizopine-oxygenase-like This CD includes the putative hydrocarbon oxygenase, MocD, a bacterial rhizopine (3-O-methyl-scyllo-inosamine, 3-O-MSI) oxygenase, and other related proteins. It has been proposed that MocD, MocE (Rieske-like ferredoxin), and MocF (ferredoxin reductase) under the regulation of MocR, act in concert to form a ferredoxin oxygenase system that demethylates 3-O-MSI to form scyllo-inosamine. This domain family appears to be structurally related to the membrane fatty acid desaturases and the alkane hydroxylases. They all share in common extensive hydrophobic regions that would be capable of spanning the membrane bilayer at least twice. Comparison of sequences also reveals the existence of three regions of conserved histidine cluster motifs that contain eight histidine residues: HXXXH, HXXHH, and HXXHH. These histidine residues are reported to be catalytically essential and proposed to be the ligands for the iron atoms contained within homologs, stearoyl CoA d
Probab=28.51 E-value=1.6e+02 Score=29.11 Aligned_cols=42 Identities=19% Similarity=0.243 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhccCCCCCchHH----------------HHHHHHHhhcccC
Q psy2044 377 LVLAGVITGYLTYDLIHFYLHYGSPHEGSYL----------------YNMKRYHNQHHFA 420 (452)
Q Consensus 377 ~~~~g~~~gyl~Yd~~Hy~~H~~~~~~~~~~----------------~~lk~~H~~HH~~ 420 (452)
.++.|.+.+ .++...|=+.|..--++ ++. ...|..|..||-.
T Consensus 48 ~~~~g~~~~-~~~~~~He~~H~~~~~~-~~~N~~~g~l~~~~~~~~~~~~~~~H~~HH~~ 105 (285)
T cd03511 48 FLVYGVLYA-ALFARWHECVHGTAFAT-RWLNDAVGQIAGLMILLPPDFFRWSHARHHRY 105 (285)
T ss_pred HHHHHHHHH-HHHHHHHHhhcccccCC-chHHHHHHHHHHHHhcCChHHHHHHHHHHhcC
Confidence 444555554 55778888888763321 221 2347889999954
No 51
>COG3239 DesA Fatty acid desaturase [Lipid metabolism]
Probab=28.34 E-value=1.3e+02 Score=31.17 Aligned_cols=45 Identities=18% Similarity=0.047 Sum_probs=28.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhccCCCCCchHHH----------------HHHHHHhhcccC
Q psy2044 375 APLVLAGVITGYLTYDLIHFYLHYGSPHEGSYLY----------------NMKRYHNQHHFA 420 (452)
Q Consensus 375 ~~~~~~g~~~gyl~Yd~~Hy~~H~~~~~~~~~~~----------------~lk~~H~~HH~~ 420 (452)
+.++..+.+..-.+....|-|.|-... ++++++ ..|..|.+||-.
T Consensus 65 ~l~~~~~~~~l~~~~~v~Hd~~Hgs~~-~~r~iNd~ig~l~~~~~~~p~~~wR~~H~~HH~~ 125 (343)
T COG3239 65 PLALLLAGLLLTGLFSVGHDCGHGSFF-KNRWINDLIGHLAAALLLAPPVFWRISHNQHHAH 125 (343)
T ss_pred HHHHHHHHHHHHHHHhhhhhccccchh-hhhhHHHHHHHHHHHHHhcChhhhhhhHHHhhcc
Confidence 344445555566777889999998543 234443 336679999943
No 52
>KOG1108|consensus
Probab=28.21 E-value=40 Score=33.00 Aligned_cols=41 Identities=17% Similarity=0.283 Sum_probs=30.7
Q ss_pred CceEEEEcCeEeecccccc-cCCCchhHhhhhcCCccchhhhcc
Q psy2044 3 QEFLIEHKGQKHNVAKFLK-FHPGGSNTIKYFKNGDITEQLIKT 45 (452)
Q Consensus 3 ~~~wv~i~gkvYDvT~fl~-~HPGG~~~L~~~aGkDvT~~eva~ 45 (452)
.+..+.|-|+|||||+=.. .-||+.= ..++|+|+|.+|+.-
T Consensus 77 ~piyLaiLGsVfdVs~gk~hYgsG~sY--nhFaGRDASrAFvsG 118 (281)
T KOG1108|consen 77 RPIYLAILGSVFDVSRGKKHYGSGCSY--NHFAGRDASRAFVSG 118 (281)
T ss_pred CceeeeeeceeeeccCCeeeeCCCCCc--ccccccccchheecc
Confidence 3567889999999987653 3455543 578999999887653
No 53
>cd01060 Membrane-FADS-like The membrane fatty acid desaturase (Membrane_FADS)-like CD includes membrane FADSs, alkane hydroxylases, beta carotene ketolases (CrtW-like), hydroxylases (CrtR-like), and other related proteins. They are present in all groups of organisms with the exception of archaea. Membrane FADSs are non-heme, iron-containing, oxygen-dependent enzymes involved in regioselective introduction of double bonds in fatty acyl aliphatic chains. They play an important role in the maintenance of the proper structure and functioning of biological membranes. Alkane hydroxylases are bacterial, integral-membrane di-iron enzymes that share a requirement for iron and oxygen for activity similar to that of membrane FADSs, and are involved in the initial oxidation of inactivated alkanes. Beta-carotene ketolase and beta-carotene hydroxylase are carotenoid biosynthetic enzymes for astaxanthin and zeaxanthin, respectively. This superfamily domain has extensive hydrophobic regions that would
Probab=27.60 E-value=1.4e+02 Score=24.72 Aligned_cols=13 Identities=31% Similarity=0.291 Sum_probs=9.7
Q ss_pred HHHHHHHhhcccC
Q psy2044 408 YNMKRYHNQHHFA 420 (452)
Q Consensus 408 ~~lk~~H~~HH~~ 420 (452)
...+..|..||..
T Consensus 50 ~~~~~~H~~HH~~ 62 (122)
T cd01060 50 GWWRRSHRRHHRY 62 (122)
T ss_pred HHHHHHHHHHhcC
Confidence 3457899999954
No 54
>PLN02579 sphingolipid delta-4 desaturase
Probab=27.53 E-value=2.3e+02 Score=29.15 Aligned_cols=42 Identities=19% Similarity=0.150 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHHHHHHhccCCCCCc---h-------------HHHHHHHHHhhcccC
Q psy2044 379 LAGVITGYLTYDLIHFYLHYGSPHEG---S-------------YLYNMKRYHNQHHFA 420 (452)
Q Consensus 379 ~~g~~~gyl~Yd~~Hy~~H~~~~~~~---~-------------~~~~lk~~H~~HH~~ 420 (452)
+.|+.+...++-..|=+.|...-++. . .....|++|..||-.
T Consensus 79 ~~~g~~~~~lf~~~HD~~Hg~~f~~~~~N~~lg~~~~l~~g~~~~~~~~~~H~~HH~~ 136 (323)
T PLN02579 79 FFGGFLNHNLFLAIHELSHNLAFKTPVYNRWLGIFANLPIGIPMSVTFQKYHLEHHRF 136 (323)
T ss_pred HHHHHHHHHHHHHHHHhhHhhhcCCHHHHHHHHHHHHHhhcCCHhHHHHHHHHHHccC
Confidence 33444444446667888887533211 1 112357899999954
No 55
>PRK06549 acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated
Probab=26.05 E-value=53 Score=29.27 Aligned_cols=17 Identities=29% Similarity=0.384 Sum_probs=13.9
Q ss_pred CCCceEEEEcCeEeecc
Q psy2044 1 MSQEFLIEHKGQKHNVA 17 (452)
Q Consensus 1 ~~~~~wv~i~gkvYDvT 17 (452)
|-...-|++||++|||+
T Consensus 1 mmk~~~itvng~~y~V~ 17 (130)
T PRK06549 1 MLRKFKITIDGKEYLVE 17 (130)
T ss_pred CCceEEEEECCEEEEEE
Confidence 44567899999999995
No 56
>cd03510 Rhizobitoxine-FADS-like This CD includes the dihydrorhizobitoxine fatty acid desaturase (RtxC) characterized in Bradyrhizobium japonicum USDA110, and other related proteins. Dihydrorhizobitoxine desaturase is reported to be involved in the final step of rhizobitoxine biosynthesis. This domain family appears to be structurally related to the membrane fatty acid desaturases and the alkane hydroxylases. They all share in common extensive hydrophobic regions that would be capable of spanning the membrane bilayer at least twice. Comparison of sequences also reveals the existence of three regions of conserved histidine cluster motifs that contain eight histidine residues: HXXXH, HXX(X)HH, and HXXHH. These histidine residues are reported to be catalytically essential and proposed to be the ligands for the iron atoms contained within homologs, stearoyl CoA desaturase and alkane hydroxylase.
Probab=25.91 E-value=1.9e+02 Score=26.66 Aligned_cols=13 Identities=31% Similarity=0.393 Sum_probs=9.9
Q ss_pred HHHHHHHhhcccC
Q psy2044 408 YNMKRYHNQHHFA 420 (452)
Q Consensus 408 ~~lk~~H~~HH~~ 420 (452)
...|+.|..||..
T Consensus 71 ~~~r~~H~~HH~~ 83 (175)
T cd03510 71 AAYRRSHLKHHRH 83 (175)
T ss_pred HHHHHHHHHHhCc
Confidence 3558999999953
No 57
>PF00487 FA_desaturase: Fatty acid desaturase This entry is only a subset of the Pfam family.; InterPro: IPR005804 Fatty acid desaturases are enzymes that catalyse the insertion of a double bond at the delta position of fatty acids. There seem to be two distinct families of fatty acid desaturases which do not seem to be evolutionary related. Family 1 is composed of: Stearoyl-CoA desaturase (SCD) (1.14.19.1 from EC) []. Family 2 is composed of: Bacterial fatty acid desaturases. Plant stearoyl-acyl-carrier-protein desaturase (1.14.19.1 from EC) [], this enzyme catalyzes the introduction of a double bond at the delta(9) position of steraoyl-ACP to produce oleoyl-ACP. This enzyme is responsible for the conversion of saturated fatty acids to unsaturated fatty acids in the synthesis of vegetable oils. Cyanobacterial DesA [], an enzyme that can introduce a second cis double bond at the delta(12) position of fatty acid bound to membranes glycerolipids. DesA is involved in chilling tolerance; the phase transition temperature of lipids of cellular membranes being dependent on the degree of unsaturation of fatty acids of the membrane lipids. This entry contains fatty acid desaturases belonging to Family 1. ; GO: 0006629 lipid metabolic process
Probab=25.90 E-value=1.1e+02 Score=28.36 Aligned_cols=40 Identities=18% Similarity=-0.008 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHHHHhccCCCCCchH---------------HHHHHHHHhhcccC
Q psy2044 381 GVITGYLTYDLIHFYLHYGSPHEGSY---------------LYNMKRYHNQHHFA 420 (452)
Q Consensus 381 g~~~gyl~Yd~~Hy~~H~~~~~~~~~---------------~~~lk~~H~~HH~~ 420 (452)
++.....+....|.+.|..-.++..+ ....|..|..||-.
T Consensus 13 ~~~~~~~~~~~~H~~~H~~~~~~~~~n~~l~~~~~~~~~~~~~~wr~~H~~HH~~ 67 (257)
T PF00487_consen 13 LGLSFARLFGLAHDAGHGAFFRSRWLNDLLGRLLGLPIGGPYSSWRISHNRHHHY 67 (257)
T ss_pred HHHHHHHHHHHHHHHhccCCcccChHHHHHHHHHHHHhcCCHhHhheeeeccccc
Confidence 34445567778899999853322111 12237889999953
No 58
>PF10933 DUF2827: Protein of unknown function (DUF2827); InterPro: IPR021234 This is a family of uncharacterised proteins found in Burkholderia.
Probab=21.92 E-value=89 Score=32.66 Aligned_cols=58 Identities=28% Similarity=0.409 Sum_probs=43.9
Q ss_pred cCCCccccccccCcCcceeeeccc-CccccccCchhhhhccCCcceeeeeEehhhHHHHHhHhhc
Q psy2044 127 WTKPMFWQVGSLGPRYREWVLAPV-DRNLRLFHSDFIEKLTRTPVYLVPSVWVPITLLLLYIGYG 190 (452)
Q Consensus 127 ~~KPll~Qv~nL~d~y~~w~~~p~-~~~~rlF~~~~~e~~t~~~~~~~~~~~~p~~~~~~~~~~~ 190 (452)
++||. -...-+..|++=|..|. .++. .+++|.+.|+|..++|-+|-|..+-.....+.
T Consensus 117 F~k~~--~~~f~~~~yD~VW~lPq~~~~~----~~yl~~l~r~Pv~~vP~iWsP~F~~~~~~~l~ 175 (364)
T PF10933_consen 117 FNKPS--GHLFNGAPYDEVWTLPQFENTC----APYLETLHRCPVRVVPHIWSPRFLDQRIAQLP 175 (364)
T ss_pred cCCCC--CccCCCCCCceeEeccchhhhc----hHHHHHHhcCCceeeCccCCchhHHHHHHhhh
Confidence 45555 22233789999999999 4443 26889999999999999999998877665553
No 59
>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=21.44 E-value=10 Score=33.27 Aligned_cols=24 Identities=25% Similarity=0.627 Sum_probs=0.0
Q ss_pred eecccccccCCCchhHhhhhcCCc
Q psy2044 14 HNVAKFLKFHPGGSNTIKYFKNGD 37 (452)
Q Consensus 14 YDvT~fl~~HPGG~~~L~~~aGkD 37 (452)
+|+.+|++.||.|.+++....+|+
T Consensus 66 ~Dig~~vr~~p~gr~ii~~lg~K~ 89 (119)
T PF11698_consen 66 HDIGEFVRHYPNGRNIIEKLGAKE 89 (119)
T ss_dssp HHHHHHHHH-GGGHHHHHHHSHHH
T ss_pred cchHHHHHHChhHHHHHHhcChHH
No 60
>cd03513 CrtW_beta-carotene-ketolase Beta-carotene ketolase/oxygenase (CrtW, also known as CrtO), the carotenoid astaxanthin biosynthetic enzyme, initially catalyzes the addition of two keto groups to carbons C4 and C4' of beta-carotene. Carotenoids are important natural pigments produced by many microorganisms and plants. Astaxanthin is reported to be an antioxidant, an anti-cancer agent, and an immune system stimulant. A number of bacteria and green algae can convert beta-carotene into astaxanthin by using several ketocarotenoids as intermediates and CrtW and a beta-carotene hydroxylase (CrtZ). CrtW initially converts beta-carotene to canthaxanthin via echinenone, and CrtZ initially mediates the conversion of beta-carotene to zeaxanthin via beta-cryptoxanthin. After a few more intermediates are formed, CrtW and CrtZ act in combination to produce astaxanthin. Sequences of this domain family appear to be structurally related to membrane fatty acid desaturases and alkane hydroxylases. Th
Probab=21.34 E-value=3.7e+02 Score=26.05 Aligned_cols=47 Identities=30% Similarity=0.304 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHHHHhhhhcccCCCC-----C----ChHHHHHH---HHhhcCCCCCCCCC
Q psy2044 296 YICGLLLWPLLEYTIHRWIFHLKPPD-----N----SPLLITLH---FGLHGLHHKVPFDD 344 (452)
Q Consensus 296 f~~G~l~~~~~EY~~HR~lfH~~~~~-----~----~~~~~~l~---~~~H~~HH~~p~d~ 344 (452)
.+.++.+..+.-|+-||- . ..|.. + +++...+. +--|..||..|.-+
T Consensus 159 l~~~~~l~~f~T~lpH~~-~-~~~~~~~~~a~~~~~~~~~~~l~c~~fgyH~eHH~fP~~P 217 (225)
T cd03513 159 ILSSLQLFYFGTWLPHRP-G-RGGFADRHRARSSRLSPVLSFLTCYHFGYHHEHHLSPSTP 217 (225)
T ss_pred HHHHHHHHHHHhhcCCCC-C-CCCCCCcccceecCccHHHHHHHHHhcCcchhhccCCCCC
Confidence 567777777778888873 1 11211 1 24454433 55799999999644
Done!