RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy2044
(452 letters)
>gnl|CDD|178053 PLN02434, PLN02434, fatty acid hydroxylase.
Length = 237
Score = 151 bits (384), Expect = 3e-43
Identities = 62/142 (43%), Positives = 83/142 (58%), Gaps = 4/142 (2%)
Query: 299 GLLLWPLLEYTIHRWIFHLKPPDNSPLLITLHFGLHGLHHKVPFDDGRLLFPPVPAGILM 358
G+ +W LLEY +HR++FH+K S T H+ LHG HHK P D RL+FPP IL
Sbjct: 90 GVFIWTLLEYILHRFLFHIKT--KSYWGNTAHYLLHGCHHKHPMDGLRLVFPPAATAILC 147
Query: 359 YLGYSLATSLFIPTWNAPLVLAGVITGYLTYDLIHFYLHYGSPHEGSYLYNMKRYHNQHH 418
++L P AP + G + GY+ YD H++LH+G P L N+K+YH HH
Sbjct: 148 VPFWNLIALFATPAT-APALFGGGLLGYVMYDCTHYFLHHGQPSTD-VLRNLKKYHLNHH 205
Query: 419 FAHYESGFGISSKFWDHIFGTL 440
F + GFGI+S WD +FGTL
Sbjct: 206 FRDQDKGFGITSSLWDRVFGTL 227
Score = 90.5 bits (225), Expect = 9e-21
Identities = 41/121 (33%), Positives = 59/121 (48%), Gaps = 16/121 (13%)
Query: 122 EHLVDWTKPMFWQVGSLGPRYREWVLAPVDRN--LRLFHSDFIEKLTRTPVYLVPSVWVP 179
+ VD KP+ +QVG LG Y EWV P+ R F SD +E LTRT + VP +W+P
Sbjct: 5 KFTVDLNKPLVFQVGHLGEDYEEWVHQPIVSKEGPRFFESDVLEFLTRTVWWAVPLIWLP 64
Query: 180 ITLLLLYIGYGRVSHFYMATHTPFTQLSLFTWCCWYYICGLLLWPLLEYTIHRWIFHLKP 239
+ L + P + + L G+ +W LLEY +HR++FH+K
Sbjct: 65 VVCWCLVKS--------VRMGLPLSAVVLMV------AFGVFIWTLLEYILHRFLFHIKT 110
Query: 240 N 240
Sbjct: 111 K 111
>gnl|CDD|225546 COG3000, ERG3, Sterol desaturase [Lipid metabolism].
Length = 271
Score = 63.6 bits (155), Expect = 3e-11
Identities = 49/231 (21%), Positives = 76/231 (32%), Gaps = 15/231 (6%)
Query: 216 YICGLLLWPLLEYTIHRWIFHLKPNNSRMQMT--WKLLRYYTRLFVYLVLLVLYLWFTTV 273
I LL L + R + + T W L L + +V LVL L
Sbjct: 17 AIALFLLAFGLHLFLLRLYLFPQEPLRKAWPTRDWLLDLVLLTLSISVVGLVLLLALILW 76
Query: 274 ATVGVHDTSVDISLEASWCCWYYICGLLLWPLLEYTIHRWIFHLKPPDNSPLLITLHFGL 333
A +G + + ++ + L L Y HR + + L +
Sbjct: 77 ALLGGYLPGLGVAPGPLPFALQLLLAFLFLDLGYYWAHRLLHR----------VPLLWAF 126
Query: 334 HGLHHKVPFDDGRLLFPPVPAGILMYLGYSLATSLFIPTWNAPLVLAGVITGYLTYDLIH 393
H +HH D P IL+ + L + + V I LIH
Sbjct: 127 HKVHHSSEVPDPLTALRFHPLEILLL-AFLGLLPLLLLGLSPVAVALLFIFLLFWAVLIH 185
Query: 394 -FYLHYGSPHEGSYLYNMKRYHNQHH-FAHYESGFGISSKFWDHIFGTLIV 442
Y++N R+H HH Y+ +G++ FWD +FGT
Sbjct: 186 SNLDLPLPLGWLRYVFNTPRHHRLHHSKDPYDKNYGVTLTFWDRLFGTYHP 236
>gnl|CDD|201057 pfam00173, Cyt-b5, Cytochrome b5-like Heme/Steroid binding domain.
This family includes heme binding domains from a diverse
range of proteins. This family also includes proteins
that bind to steroids. The family includes progesterone
receptors. Many members of this subfamily are membrane
anchored by an N-terminal transmembrane alpha helix.
This family also includes a domain in some chitin
synthases. There is no known ligand for this domain in
the chitin synthases.
Length = 74
Score = 48.7 bits (117), Expect = 9e-08
Identities = 21/56 (37%), Positives = 28/56 (50%), Gaps = 3/56 (5%)
Query: 51 AYGHHVPRKHNVAKFLKFHPGGSNTIKYFKNGDITEQLIKTHHSPSAYELLKDYRV 106
V ++V +FLK HPGG + I D TE HS +A +LL+ YRV
Sbjct: 18 VINGKV---YDVTRFLKDHPGGEDVILSAAGKDATEAFEDAIHSEAARKLLEKYRV 70
Score = 38.3 bits (90), Expect = 4e-04
Identities = 17/50 (34%), Positives = 24/50 (48%)
Query: 2 SQEFLIEHKGQKHNVAKFLKFHPGGSNTIKYFKNGDITEQLIKTHHSPSA 51
+ I G+ ++V +FLK HPGG + I D TE HS +A
Sbjct: 12 DGDCWIVINGKVYDVTRFLKDHPGGEDVILSAAGKDATEAFEDAIHSEAA 61
>gnl|CDD|227599 COG5274, CYB5, Cytochrome b involved in lipid metabolism [Energy
production and conversion / Lipid metabolism].
Length = 164
Score = 44.0 bits (104), Expect = 3e-05
Identities = 20/54 (37%), Positives = 27/54 (50%)
Query: 60 HNVAKFLKFHPGGSNTIKYFKNGDITEQLIKTHHSPSAYELLKDYRVSDDNPQE 113
++V++FL HPGG + IK D T+ HHS LLKD V + E
Sbjct: 75 YDVSQFLDEHPGGEDIIKDTAGKDATKAFNFLHHSHQIGNLLKDVYVDQVHRPE 128
Score = 35.6 bits (82), Expect = 0.022
Identities = 17/50 (34%), Positives = 26/50 (52%)
Query: 2 SQEFLIEHKGQKHNVAKFLKFHPGGSNTIKYFKNGDITEQLIKTHHSPSA 51
S++ I G+ ++V++FL HPGG + IK D T+ HHS
Sbjct: 63 SEDCWIVINGKVYDVSQFLDEHPGGEDIIKDTAGKDATKAFNFLHHSHQI 112
>gnl|CDD|217907 pfam04116, FA_hydroxylase, Fatty acid hydroxylase superfamily.
This superfamily includes fatty acid and carotene
hydroxylases and sterol desaturases. Beta-carotene
hydroxylase is involved in zeaxanthin synthesis by
hydroxylating beta-carotene, but the enzyme may be
involved in other pathways. This family includes C-5
sterol desaturase and C-4 sterol methyl oxidase. Members
of this family are involved in cholesterol biosynthesis
and biosynthesis a plant cuticular wax. These enzymes
contain two copies of a HXHH motif. Members of this
family are integral membrane proteins.
Length = 114
Score = 42.5 bits (100), Expect = 4e-05
Identities = 39/125 (31%), Positives = 54/125 (43%), Gaps = 14/125 (11%)
Query: 297 ICGLLLWPLLEYTIHRWIFHLKPPDNSPLLITLHFGLHGLHH--KVPFDDGRLLFPPVPA 354
+ GLLL+ +EY +HR + H P + H +HH + P F P+ A
Sbjct: 2 LLGLLLFDFVEYWVHR-LLHRVPFL---------WRFHKVHHSDESPNPLTAFRFHPLEA 51
Query: 355 GILMYLGYSLATSLFIPTWNAPLVLAGVITGYLTYDLIHFYLHYGSPHEGSYLYNMKRYH 414
+L + L LF L+ G++ G L Y IH LH P SYL+ RYH
Sbjct: 52 LLLALIPLLLLLLLFGLHLLVILL--GLLLGTLLYLFIHSGLHLWLPPLLSYLFVTPRYH 109
Query: 415 NQHHF 419
HH
Sbjct: 110 RLHHS 114
>gnl|CDD|215141 PLN02252, PLN02252, nitrate reductase [NADPH].
Length = 888
Score = 35.8 bits (83), Expect = 0.054
Identities = 22/72 (30%), Positives = 38/72 (52%), Gaps = 2/72 (2%)
Query: 38 ITEQLIKTHHSP-SAYGHHVPRKHNVAKFLKFHPGGSNTIKYFKNGDITEQLIKTHHSPS 96
T ++ H+S S + ++ +FLK HPGG+++I D TE+ HS
Sbjct: 520 YTMSEVRKHNSEDSCWIVVHGHVYDCTRFLKDHPGGADSILINAGTDCTEEFDAI-HSDK 578
Query: 97 AYELLKDYRVSD 108
A ++L+DYR+ +
Sbjct: 579 AKKMLEDYRIGE 590
Score = 28.5 bits (64), Expect = 8.6
Identities = 14/40 (35%), Positives = 21/40 (52%)
Query: 7 IEHKGQKHNVAKFLKFHPGGSNTIKYFKNGDITEQLIKTH 46
I G ++ +FLK HPGG+++I D TE+ H
Sbjct: 536 IVVHGHVYDCTRFLKDHPGGADSILINAGTDCTEEFDAIH 575
>gnl|CDD|224216 COG1297, COG1297, Predicted membrane protein [Function unknown].
Length = 624
Score = 32.0 bits (73), Expect = 0.67
Identities = 13/68 (19%), Positives = 22/68 (32%), Gaps = 17/68 (25%)
Query: 345 GRLLFPPVPAGILMYLGYSLATSLFIPTWNAPLVLAGVITGYLTYDLIHFYLHYGSPHEG 404
G+L P + G+ +YL P+ P+ + GV+ +
Sbjct: 540 GKLRLPVLAVGVGIYLP---------PSLTIPIFVGGVLR--------WAVDRKLKKGDE 582
Query: 405 SYLYNMKR 412
Y KR
Sbjct: 583 RYKERAKR 590
>gnl|CDD|204705 pfam11663, Toxin_YhaV, Toxin with endonuclease activity YhaV. YhaV
causes reversible bacteriostasis and is part of a
toxin-antitoxin system in Escherichia coli along with
PrlF. The toxicity of YhaV is counteracted by PrlF by
the formation of a tight complex which binds to the
promoter of the prlF-yhaV operon. In vitro, YhaV also
has endonuclease activity.
Length = 141
Score = 30.0 bits (68), Expect = 1.1
Identities = 11/33 (33%), Positives = 17/33 (51%)
Query: 125 VDWTKPMFWQVGSLGPRYREWVLAPVDRNLRLF 157
D +P + Q +LGP ++ W A + RLF
Sbjct: 52 QDPARPEYRQGNTLGPEHKHWRRAKFFQRYRLF 84
>gnl|CDD|188517 TIGR04002, TIGR04002, TIGR04002 family protein. TIGR04002 family
proteins, a division within DUF1393 ( pfam07155), occur
strictly as part of a tandem gene pair with an
uncharacterized radical SAM protein [Unknown function,
General].
Length = 151
Score = 30.1 bits (68), Expect = 1.5
Identities = 9/29 (31%), Positives = 14/29 (48%)
Query: 351 PVPAGILMYLGYSLATSLFIPTWNAPLVL 379
P AGI+ +GY LA + ++ A
Sbjct: 94 PFVAGIISTVGYYLAEGILFGSFTAAFAS 122
>gnl|CDD|166510 PLN02869, PLN02869, fatty aldehyde decarbonylase.
Length = 620
Score = 31.0 bits (70), Expect = 1.5
Identities = 22/65 (33%), Positives = 34/65 (52%), Gaps = 5/65 (7%)
Query: 355 GILMYLGY-SLATSLFIPTWNAPLVLAGVITGYLTYDLIHFYLHYGSPHEGSYLYNMKRY 413
GIL Y+GY L + +P W VL ++ + ++++LH H YLY+ RY
Sbjct: 103 GILFYVGYMILPGASHMPLWRTDGVLITILLHMGPVEFLYYWLHRALHHH--YLYS--RY 158
Query: 414 HNQHH 418
H+ HH
Sbjct: 159 HSHHH 163
>gnl|CDD|164590 MTH00015, ND6, NADH dehydrogenase subunit 6; Validated.
Length = 155
Score = 29.8 bits (67), Expect = 1.8
Identities = 25/105 (23%), Positives = 33/105 (31%), Gaps = 12/105 (11%)
Query: 175 SVWVPITLLLLYIGYGRVSHFYMATHTPFTQLSLFTWCCWYYICGLLLWPLLEYTIHRWI 234
S W L+Y+G V Y TP QL+L Y + LL +
Sbjct: 46 SSWFAFLTFLIYVGGMLVMFAYFLALTPNQQLNLGP-MAKYTLITLLTLSTTLKLTNPPS 104
Query: 235 ---FHLKPNNSRMQMTWKLLRYYTRLFVYLVLLVLYLWFTTVATV 276
F N+ + Y L+ L L L T V V
Sbjct: 105 PSFFSSTQGNTFL--------YQPENAPLLIFLALILLLTMVIVV 141
>gnl|CDD|226827 COG4392, COG4392, Predicted membrane protein [Function unknown].
Length = 107
Score = 28.8 bits (65), Expect = 1.9
Identities = 14/56 (25%), Positives = 24/56 (42%), Gaps = 11/56 (19%)
Query: 345 GRLLFPPVPAGILMYLGYSLATSLFIP-----------TWNAPLVLAGVITGYLTY 389
+L PP L ++ ++ T+L P +WN P +LAG++ L
Sbjct: 29 LKLRLPPWVRRFLSFVPVAILTALIAPDVLMPHGGLDPSWNNPYLLAGLVAVALAI 84
>gnl|CDD|212160 cd11615, SAF_NeuB_like, C-terminal SAF domain of sialic acid
synthetase. Sialic acid synthetase (N-acetylneuraminate
synthase or N-acetylneuraminate-9-phosphate synthase)
catalyzes the condensation of phosphoenolpyruvate with
N-acetylmannosamine (ManNAc, in bacteria) or
N-acetylmannosamine-6-phosphate (ManNAc-6P, in mammals),
to yield N-acetylneuramic acid (NeuNAc) or
N-acetylneuramic acid-9-phosphate (NeuNAc-9P),
respectively. The N-terminal NeuB domain, a
TIM-barrel-like structure, contains the catalytic site,
the function of the SAF domain is not as clear. It may
participate in domain-swapped dimerization and play a
role in binding the substrate, in either domain-swapped
dimers or by directly interacting with the N-terminal
domain. Also included in the family are PEP-sugar
pyruvyltransferases known as spore coat polysaccharide
biosynthesis proteins (SpsE).
Length = 58
Score = 27.7 bits (63), Expect = 2.1
Identities = 9/27 (33%), Positives = 14/27 (51%), Gaps = 5/27 (18%)
Query: 425 GFGISSKFWDHIFGTLIVLRKLNRTLK 451
G G+S K+ D + G +K R +K
Sbjct: 27 GGGLSPKYLDEVLG-----KKAKRDIK 48
>gnl|CDD|176246 cd08286, FDH_like_ADH2, formaldehyde dehydrogenase (FDH)-like.
This group is related to formaldehyde dehydrogenase
(FDH), which is a member of the zinc-dependent/medium
chain alcohol dehydrogenase family. This family uses
NAD(H) as a cofactor in the interconversion of alcohols
and aldehydes, or ketones. Another member is identified
as a dihydroxyacetone reductase. Like the zinc-dependent
alcohol dehydrogenases (ADH) of the medium chain alcohol
dehydrogenase/reductase family (MDR), tetrameric FDHs
have a catalytic zinc that resides between the catalytic
and NAD(H)binding domains and a structural zinc in a
lobe of the catalytic domain. Unlike ADH, where
NAD(P)(H) acts as a cofactor, NADH in FDH is a tightly
bound redox cofactor (similar to nicotinamide proteins).
The medium chain alcohol dehydrogenase family (MDR) has
a NAD(P)(H)-binding domain in a Rossmann fold of a
beta-alpha form. The N-terminal region typically has an
all-beta catalytic domain. These proteins typically form
dimers (typically higher plants, mammals) or tetramers
(yeast, bacteria), and have 2 tightly bound zinc atoms
per subunit.
Length = 345
Score = 29.5 bits (67), Expect = 4.1
Identities = 10/20 (50%), Positives = 12/20 (60%)
Query: 272 TVATVGVHDTSVDISLEASW 291
+A VGVH VD+ LE W
Sbjct: 261 HIANVGVHGKPVDLHLEKLW 280
>gnl|CDD|192535 pfam10320, 7TM_GPCR_Srsx, Serpentine type 7TM GPCR chemoreceptor
Srsx. Chemoreception is mediated in Caenorhabditis
elegans by members of the seven-transmembrane
G-protein-coupled receptor class (7TM GPCRs) of proteins
which are of the serpentine type. Srsx is a solo family
amongst the superfamilies of chemoreceptors.
Chemoperception is one of the central senses of soil
nematodes like C. elegans which are otherwise 'blind'
and 'deaf'.
Length = 257
Score = 28.7 bits (65), Expect = 5.0
Identities = 18/107 (16%), Positives = 39/107 (36%), Gaps = 12/107 (11%)
Query: 181 TLLLLYIGYGRVSHFYMATHTPFTQLSLFTWCCWYY---ICGLLLWPLLEYTIHRWIFHL 237
+ +L G+ + P L+ + + I +++ + I +
Sbjct: 116 SSFILVYGFLERDDETIIVCAPPLALNGTAFRIFTLSSVIINVIVLIVYIILIIIFKKKG 175
Query: 238 KPNNSRMQMTWKLLRYYTRLFVYLVLLVLYLWFTT--VATVGVHDTS 282
+ NS K+ + L V V++ ++ WFT+ TV + T
Sbjct: 176 QTTNSDS---KKVFK---SLQV-TVIIFIFGWFTSTIANTVFLLLTE 215
>gnl|CDD|178739 PLN03198, PLN03198, delta6-acyl-lipid desaturase; Provisional.
Length = 526
Score = 29.3 bits (65), Expect = 5.6
Identities = 15/49 (30%), Positives = 26/49 (53%), Gaps = 2/49 (4%)
Query: 60 HNVAKFLKFHPGGSNTIKYFKNGDITEQLIKTHHSPSAYELLKDYRVSD 108
++V+ F HPGGS YF G + H+ S +++L+D+ + D
Sbjct: 129 YDVSDFAAEHPGGSVISTYF--GRDGTDAFSSFHAASTWKILQDFYIGD 175
>gnl|CDD|235058 PRK02654, PRK02654, putative inner membrane protein translocase
component YidC; Provisional.
Length = 375
Score = 28.8 bits (65), Expect = 5.7
Identities = 9/16 (56%), Positives = 13/16 (81%)
Query: 345 GRLLFPPVPAGILMYL 360
G LF P+PAG+L+Y+
Sbjct: 310 GMFLFFPLPAGVLLYM 325
>gnl|CDD|173594 PTZ00403, PTZ00403, phosphatidylserine decarboxylase; Provisional.
Length = 353
Score = 29.1 bits (65), Expect = 5.8
Identities = 20/63 (31%), Positives = 26/63 (41%), Gaps = 6/63 (9%)
Query: 1 MSQEFLIEHKGQKHNVAKFLKFHPGGSNTIKYFKNGDITEQLIKTHHSPSAYGH-HVPRK 59
+S E+L KG K NV FL GS+ K + +G + SP Y H H P
Sbjct: 147 LSSEYLENVKGVKFNVNTFL-----GSDMQKKYNDGSTKFFYAIFYLSPKKYHHFHAPFN 201
Query: 60 HNV 62
Sbjct: 202 FKY 204
>gnl|CDD|178115 PLN02499, PLN02499, glycerol-3-phosphate acyltransferase.
Length = 498
Score = 28.2 bits (63), Expect = 9.0
Identities = 20/78 (25%), Positives = 27/78 (34%), Gaps = 21/78 (26%)
Query: 316 HLKPPDNSPLLITLHFGLHGLHHKVP-----FDDGRLLFPPVPAGIL-----MYLGYSLA 365
+ PP ++ V F DGRL+ P PA L + LG LA
Sbjct: 194 QIHPP------FPANYNGDNQQQLVRPLPVIFHDGRLVKRPTPATALLILLWIPLGIILA 247
Query: 366 T-----SLFIPTWNAPLV 378
+ +P W P V
Sbjct: 248 VIRIFVGIMLPMWAIPYV 265
>gnl|CDD|197330 cd09096, Deadenylase_nocturnin, C-terminal deadenylase domain of
nocturnin and related domains. This subfamily contains
the C-terminal catalytic domain of the deadenylase,
nocturnin, and related domains. Nocturnin is a
poly(A)-specific 3' exonuclease that specifically
degrades the 3' poly(A) tail of RNA in a process known
as deadenylation. This nuclease activity is manganese
dependent. Nocturnin is expressed in the cytoplasm of
Xenopus laevis retinal photoreceptor cells in a rhythmic
fashion, and it has been proposed that it participates
in posttranscriptional regulation of the circadian clock
or its outputs, and that the mRNA target(s) of this
deadenylase are circadian clock-related. In mouse, the
nocturnin gene, mNoc, is expressed in a circadian
pattern in a range of tissues including retina, spleen,
heart, kidney, and liver. It is highly expressed in
bone-marrow stromal cells, adipocytes and hepatocytes.
In mammals, nocturnin plays a role in regulating
mesenchymal stem-cell lineage allocation, perhaps
through regulating PPAR-gamma (peroxisome
proliferator-activated receptor-gamma) nuclear
translocation. This subfamily belongs to the large EEP
(exonuclease/endonuclease/phosphatase) superfamily that
contains functionally diverse enzymes that share a
common catalytic mechanism of cleaving phosphodiester
bonds.
Length = 280
Score = 28.2 bits (63), Expect = 9.0
Identities = 26/108 (24%), Positives = 35/108 (32%), Gaps = 34/108 (31%)
Query: 81 NGDITEQLIKTHHSP-----SAYELLKDYRVSDDNPQE------YIREEGDIEHLVD--W 127
N + TE + KT + SAY+LL S D E IR G+ H +D +
Sbjct: 183 NAEPTEPVYKTFSNSSLNLNSAYKLL-----SADGQSEPPYTTWKIRTSGECRHTLDYIF 237
Query: 128 TKPMFWQVGSLGPRYREWVLAPVDRNLRLFHSDFIEKLTRTPVYLVPS 175
V L E + P R P + PS
Sbjct: 238 YSKDALSVEQLLDLPTEEQIGP----------------NRLPSFNYPS 269
>gnl|CDD|226454 COG3945, COG3945, Uncharacterized conserved protein [Function
unknown].
Length = 189
Score = 27.8 bits (62), Expect = 9.5
Identities = 8/26 (30%), Positives = 12/26 (46%)
Query: 391 LIHFYLHYGSPHEGSYLYNMKRYHNQ 416
L ++ H G P E +Y M H +
Sbjct: 67 LFNYMEHEGGPFEEGPIYVMTVEHGE 92
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.327 0.143 0.490
Gapped
Lambda K H
0.267 0.0759 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 24,190,571
Number of extensions: 2418119
Number of successful extensions: 3358
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3335
Number of HSP's successfully gapped: 82
Length of query: 452
Length of database: 10,937,602
Length adjustment: 100
Effective length of query: 352
Effective length of database: 6,502,202
Effective search space: 2288775104
Effective search space used: 2288775104
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 61 (27.2 bits)