RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy2044
(452 letters)
>2ibj_A Cytochrome B5, CYTB5; FLY cytochrome B5, X-RAY diffraction, heme,
electron transport; HET: HEM; 1.55A {Musca domestica}
Length = 88
Score = 51.9 bits (125), Expect = 6e-09
Identities = 17/46 (36%), Positives = 22/46 (47%)
Query: 61 NVAKFLKFHPGGSNTIKYFKNGDITEQLIKTHHSPSAYELLKDYRV 106
+V FL HPGG + D TE HS A E++K Y+V
Sbjct: 33 DVTAFLNEHPGGEEVLIEQAGKDATEHFEDVGHSSDAREMMKQYKV 78
Score = 41.1 bits (97), Expect = 4e-05
Identities = 13/38 (34%), Positives = 15/38 (39%)
Query: 15 NVAKFLKFHPGGSNTIKYFKNGDITEQLIKTHHSPSAY 52
+V FL HPGG + D TE HS A
Sbjct: 33 DVTAFLNEHPGGEEVLIEQAGKDATEHFEDVGHSSDAR 70
>1hko_A Cytochrome B5; electron transfer protein, heme, electron transport;
HET: HEM; NMR {Bos taurus} SCOP: d.120.1.1 PDB: 2i96_A*
Length = 104
Score = 51.6 bits (124), Expect = 1e-08
Identities = 17/46 (36%), Positives = 24/46 (52%)
Query: 61 NVAKFLKFHPGGSNTIKYFKNGDITEQLIKTHHSPSAYELLKDYRV 106
++ KFL+ HPGG ++ GD TE HS A EL K + +
Sbjct: 35 DLTKFLEEHPGGEEVLREQAGGDATENFEDVGHSTDARELSKTFII 80
Score = 40.8 bits (96), Expect = 8e-05
Identities = 14/38 (36%), Positives = 19/38 (50%)
Query: 15 NVAKFLKFHPGGSNTIKYFKNGDITEQLIKTHHSPSAY 52
++ KFL+ HPGG ++ GD TE HS A
Sbjct: 35 DLTKFLEEHPGGEEVLREQAGGDATENFEDVGHSTDAR 72
>3ner_A Cytochrome B5 type B; heme, electron transport; HET: HEM; 1.45A
{Homo sapiens} PDB: 1awp_A* 3mus_A* 1b5m_A* 1eue_A*
1icc_A* 1lj0_A* 2i89_A*
Length = 92
Score = 50.4 bits (121), Expect = 3e-08
Identities = 16/46 (34%), Positives = 22/46 (47%)
Query: 61 NVAKFLKFHPGGSNTIKYFKNGDITEQLIKTHHSPSAYELLKDYRV 106
+V +FL HPGG + D +E HS A E+LK Y +
Sbjct: 36 DVTRFLNEHPGGEEVLLEQAGVDASESFEDVGHSSDAREMLKQYYI 81
Score = 40.0 bits (94), Expect = 1e-04
Identities = 12/38 (31%), Positives = 16/38 (42%)
Query: 15 NVAKFLKFHPGGSNTIKYFKNGDITEQLIKTHHSPSAY 52
+V +FL HPGG + D +E HS A
Sbjct: 36 DVTRFLNEHPGGEEVLLEQAGVDASESFEDVGHSSDAR 73
>1cyo_A Cytochrome B5; electron transport; HET: HEM; 1.50A {Bos taurus}
SCOP: d.120.1.1 PDB: 1bfx_A* 1i87_A 1i8c_A 1iet_A 1ieu_A
1do9_A* 1aqa_A* 1aw3_A* 1axx_A* 1b5a_A* 1b5b_A* 1blv_A*
1mny_A* 2axx_A* 1ib7_A* 1jex_A* 1ehb_A* 1nx7_A* 1u9u_A*
1m20_A* ...
Length = 93
Score = 50.0 bits (120), Expect = 3e-08
Identities = 17/46 (36%), Positives = 24/46 (52%)
Query: 61 NVAKFLKFHPGGSNTIKYFKNGDITEQLIKTHHSPSAYELLKDYRV 106
++ KFL+ HPGG ++ GD TE HS A EL K + +
Sbjct: 31 DLTKFLEEHPGGEEVLREQAGGDATENFEDVGHSTDARELSKTFII 76
Score = 39.6 bits (93), Expect = 1e-04
Identities = 14/38 (36%), Positives = 19/38 (50%)
Query: 15 NVAKFLKFHPGGSNTIKYFKNGDITEQLIKTHHSPSAY 52
++ KFL+ HPGG ++ GD TE HS A
Sbjct: 31 DLTKFLEEHPGGEEVLREQAGGDATENFEDVGHSTDAR 68
>1mj4_A Sulfite oxidase; cytochrome B5, heme, oxidoreductase; HET: HEM;
1.20A {Homo sapiens} SCOP: d.120.1.1
Length = 82
Score = 48.1 bits (115), Expect = 1e-07
Identities = 12/48 (25%), Positives = 21/48 (43%), Gaps = 2/48 (4%)
Query: 61 NVAKFLKFHPGGSNTIKYF--KNGDITEQLIKTHHSPSAYELLKDYRV 106
+V +F+ HPGG + + + L H+ ELL Y++
Sbjct: 32 DVTEFVDLHPGGPSKLMLAAGGPLEPFWALYAVHNQSHVRELLAQYKI 79
Score = 37.7 bits (88), Expect = 5e-04
Identities = 8/40 (20%), Positives = 15/40 (37%), Gaps = 2/40 (5%)
Query: 15 NVAKFLKFHPGGSNTIKYF--KNGDITEQLIKTHHSPSAY 52
+V +F+ HPGG + + + L H+
Sbjct: 32 DVTEFVDLHPGGPSKLMLAAGGPLEPFWALYAVHNQSHVR 71
>3lf5_A Cytochrome B5 reductase 4; NCB5OR, electron transfer, redox, heme,
endoplasmic reticulu flavoprotein, iron, metal-binding,
NAD, oxidoreductase; HET: HEM; 1.25A {Homo sapiens}
Length = 88
Score = 47.6 bits (114), Expect = 2e-07
Identities = 13/46 (28%), Positives = 24/46 (52%)
Query: 61 NVAKFLKFHPGGSNTIKYFKNGDITEQLIKTHHSPSAYELLKDYRV 106
NV+ ++++HPGG + + D TE + H + +LK+ V
Sbjct: 32 NVSPYMEYHPGGEDELMRAAGSDGTELFDQVHRWVNYESMLKECLV 77
Score = 37.6 bits (88), Expect = 6e-04
Identities = 10/37 (27%), Positives = 19/37 (51%)
Query: 15 NVAKFLKFHPGGSNTIKYFKNGDITEQLIKTHHSPSA 51
NV+ ++++HPGG + + D TE + H +
Sbjct: 32 NVSPYMEYHPGGEDELMRAAGSDGTELFDQVHRWVNY 68
>2keo_A Probable E3 ubiquitin-protein ligase HERC2; protein of unknown
function, HERC2 cytochrome domain, ligase binding,
phosphoprotein; NMR {Homo sapiens}
Length = 112
Score = 47.9 bits (114), Expect = 3e-07
Identities = 6/46 (13%), Positives = 13/46 (28%)
Query: 61 NVAKFLKFHPGGSNTIKYFKNGDITEQLIKTHHSPSAYELLKDYRV 106
++ F ++ + F D L E + + V
Sbjct: 50 DIKDFQTQSLTENSILAQFAGEDPVVALEAALQFEDTRESMHAFCV 95
Score = 37.9 bits (88), Expect = 0.001
Identities = 4/38 (10%), Positives = 9/38 (23%)
Query: 15 NVAKFLKFHPGGSNTIKYFKNGDITEQLIKTHHSPSAY 52
++ F ++ + F D L
Sbjct: 50 DIKDFQTQSLTENSILAQFAGEDPVVALEAALQFEDTR 87
>1cxy_A Cytochrome B5; helix, beta-strand, electron transport; HET: HEM;
1.65A {Ectothiorhodospira shaposhnikovii} SCOP:
d.120.1.1
Length = 90
Score = 44.6 bits (106), Expect = 3e-06
Identities = 11/50 (22%), Positives = 21/50 (42%), Gaps = 4/50 (8%)
Query: 61 NVAKFLKFHPGGSNTIKYFKNGDITEQL----IKTHHSPSAYELLKDYRV 106
++ ++ HPG + + + + TE HS A LL+ Y +
Sbjct: 34 DLTPYVPNHPGPAGMMLVWCGQESTEAWETKSYGEPHSSLAARLLQRYLI 83
Score = 33.9 bits (78), Expect = 0.016
Identities = 8/42 (19%), Positives = 16/42 (38%), Gaps = 4/42 (9%)
Query: 15 NVAKFLKFHPGGSNTIKYFKNGDITEQL----IKTHHSPSAY 52
++ ++ HPG + + + + TE HS A
Sbjct: 34 DLTPYVPNHPGPAGMMLVWCGQESTEAWETKSYGEPHSSLAA 75
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 47.2 bits (111), Expect = 1e-05
Identities = 76/509 (14%), Positives = 131/509 (25%), Gaps = 170/509 (33%)
Query: 40 EQLIKTHHSPSAYG-HHVPRKHNVAKF------LKFHP-------GGS------------ 73
EQ + ++ + ++V R K L+ GS
Sbjct: 114 EQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLS 173
Query: 74 --------------NTIKYFKNGDITEQLIKTHHSPSAYELLKDYRVSDDNPQEYIREEG 119
N + E L K + ++ ++ D+
Sbjct: 174 YKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLY-----QIDPNWTSRSDHSSNIKLR-- 226
Query: 120 DIEHLVDWTKPMFWQVGSLGPRYRE-----------WVLAPVD---------RNLRLFHS 159
I + + + Y + R ++
Sbjct: 227 -IHSIQAELRRLLKS-----KPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVT-- 278
Query: 160 DFIEKLTRTPVYLVPSVWV-----PITLLLLYIG--YGRVSHFYMATHTPFTQLSLF--- 209
DF+ T T + L +LLL Y+ + + T P LS+
Sbjct: 279 DFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPR-EVLTTNPRR-LSIIAES 336
Query: 210 ------TWCCWYYICGLLLWPLLEYTIHRWIFHLKPNNSRMQMTWKLLRYYTRLFVY--- 260
TW W ++ L I + L+P R + + RL V+
Sbjct: 337 IRDGLATWDNWKHV---NCDKLTT-IIESSLNVLEPAEYR--------KMFDRLSVFPPS 384
Query: 261 ----LVLLVLYLWFTTVATVGVHDTSVDISLEASWCCWYYICGLLL--WPLLEYTIHRWI 314
+LL L +WF D+ + + Y L+ +I
Sbjct: 385 AHIPTILLSL-IWF--------DVIKSDVMVVVNKLHKY---SLVEKQPKESTISIPSIY 432
Query: 315 FHLKPPDNSPLLITLHFGL---HGLHHKVPFDDGRLLFPPVPAG-ILMYLGYSLATSL-- 368
LK + LH + + + DD L PP ++G+ L
Sbjct: 433 LELKVKLEN--EYALHRSIVDHYNIPKTFDSDD---LIPPYLDQYFYSHIGHHLKNIEHP 487
Query: 369 --------------FI--------PTWNAPLVLAGVITGYLTYDLIHFYLHYGSPHEGSY 406
F+ WNA + + L FY Y ++ Y
Sbjct: 488 ERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQ-----QLK-FYKPYICDNDPKY 541
Query: 407 LYNMKRYHNQ-HHFAHYESGFGISSKFWD 434
+R N F I SK+ D
Sbjct: 542 ----ERLVNAILDFLPKIEENLICSKYTD 566
>1x3x_A Cytochrome B5; hemoprotein, porcine parasitic namatode, electron
transport; HET: HEM; 1.80A {Ascaris suum}
Length = 82
Score = 35.3 bits (82), Expect = 0.004
Identities = 11/50 (22%), Positives = 16/50 (32%), Gaps = 5/50 (10%)
Query: 61 NVAKFLKFHPGGSNTIKYFKNGDITEQLIKTHHSP----SAYELLKDYRV 106
++ F K HPGG + D T L + LK +
Sbjct: 30 DMTSFYKEHPGGKVILNKA-GQDATSVLKTLAPHVKAADVVMKKLKQTCI 78
Score = 31.1 bits (71), Expect = 0.13
Identities = 10/37 (27%), Positives = 13/37 (35%), Gaps = 1/37 (2%)
Query: 15 NVAKFLKFHPGGSNTIKYFKNGDITEQLIKTHHSPSA 51
++ F K HPGG + D T L A
Sbjct: 30 DMTSFYKEHPGGKVILNKA-GQDATSVLKTLAPHVKA 65
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 37.0 bits (85), Expect = 0.016
Identities = 72/466 (15%), Positives = 113/466 (24%), Gaps = 218/466 (46%)
Query: 16 VAKFLKF-----HPGGSNT--------IKYF-----KNGDI-----------------TE 40
V KFL + P + F + DI T+
Sbjct: 61 VGKFLGYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDIHALAAKLLQENDTTLVKTK 120
Query: 41 QLIKT-------------HHSPSAYGHHVPRKHNVAK-FLKFHPGG-SNTIKYFKNGDIT 85
+LIK S SA V + A+ F GG NT YF+
Sbjct: 121 ELIKNYITARIMAKRPFDKKSNSALFRAVGEGN--AQLVAIF--GGQGNTDDYFE----- 171
Query: 86 EQLIKTHHSPSAYELLKDYRVSDDNPQEYIREEGD-IEHLVDWT---KPMFWQVGSLGPR 141
EL Y+ + I+ + + L+ T + +F + G
Sbjct: 172 -------------ELRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVF----TQGLN 214
Query: 142 YREWVLAPVDRNLRLFHSDFIEKLTRTP--VYLVPSVWVPITLLLLYIGYGRVSHFYMAT 199
EW+ P + TP YL+ +PI+ L IG
Sbjct: 215 ILEWLENP----------------SNTPDKDYLLS---IPISCPL--IG----------- 242
Query: 200 HTPFTQLSLFTWCCWYYICGLLLWPLLEYTIHRWIFHLKPNNSRMQMTWKLLRYYTRLFV 259
QL + LL P R +
Sbjct: 243 ---VIQL-----AHYVVTAKLL--------------GFTPGELRSYLKG----------- 269
Query: 260 YLVLLVLYLWFTTVATVGVHDTSVDISLEASWCCWYYICGLLLWPLLEYTIHRWIFHLKP 319
T + G+ T+V I+ SW ++ + +F +
Sbjct: 270 -----------ATGHSQGLV-TAVAIAETDSWESFFVSVRKAI---------TVLFFI-- 306
Query: 320 PDNSPLLITLHFGLHGLHHKVPFDDGRLLFPP------------VPAGILMYLGYSLAT- 366
G+ + P PP VP+ +L +
Sbjct: 307 ------------GVRC-YEAYP----NTSLPPSILEDSLENNEGVPSPMLSISNLTQEQV 349
Query: 367 ---------------SLFIPTWNAPLVLAGVITGYLTYDLIHFYLH 397
+ I N L V++G L L
Sbjct: 350 QDYVNKTNSHLPAGKQVEISLVNGAKNL--VVSGP-PQSLYGLNLT 392
Score = 30.0 bits (67), Expect = 2.1
Identities = 30/184 (16%), Positives = 56/184 (30%), Gaps = 72/184 (39%)
Query: 2 SQEFLIEHKG------QKHNVAKFLKFHPGGSNTIKYFKNGDITEQLIKTHHSPSAYGHH 55
SQE +G + A+ + + D +H YG
Sbjct: 1626 SQE-----QGMGMDLYKTSKAAQDV------------WNRAD--------NHFKDTYGFS 1660
Query: 56 VPR--KHNVAKFLKFHPGGSNTIKYFKNGDITEQLIKTHHSPSAYELLKDYRVSDDNPQE 113
+ +N L H GG + G + I+ ++S +E + D ++ + +
Sbjct: 1661 ILDIVINN-PVNLTIHFGG-------EKG----KRIRENYSAMIFETIVDGKLKTEKIFK 1708
Query: 114 YIRE-------EGDIEHLVD--WTKP-MF------WQVGSLGPRYREWVLAPVDRNLRLF 157
I E + L +T+P + ++ + L P D F
Sbjct: 1709 EINEHSTSYTFRSEKGLLSATQFTQPALTLMEKAAFED------LKSKGLIPAD---ATF 1759
Query: 158 --HS 159
HS
Sbjct: 1760 AGHS 1763
>1kbi_A Cytochrome B2, L-LCR; flavocytochrome B2, electron transfer,
oxidoreductase; HET: HEM FMN; 2.30A {Saccharomyces
cerevisiae} SCOP: c.1.4.1 d.120.1.1 PDB: 1fcb_A*
1lco_A* 1ldc_A* 1sze_A* 2oz0_A* 1szf_A* 1szg_A* 1ltd_A*
1kbj_A* 1qcw_A* 3ks0_A*
Length = 511
Score = 32.3 bits (74), Expect = 0.31
Identities = 13/55 (23%), Positives = 25/55 (45%), Gaps = 1/55 (1%)
Query: 11 GQKHNVAKFLKFHPGGSNTIKYFKNGDITEQLIKTHHSPSAYGHHVPRKHNVAKF 65
G +++ +FL HPGG + IK+ D+T H P+ ++ + +
Sbjct: 31 GYVYDLTRFLPNHPGGQDVIKFNAGKDVTAIFEPLHA-PNVIDKYIAPEKKLGPL 84
Score = 31.1 bits (71), Expect = 0.86
Identities = 17/85 (20%), Positives = 28/85 (32%), Gaps = 14/85 (16%)
Query: 61 NVAKFLKFHPGGSNTIKYFKNGDITEQLIKTHH--------SPSAY------ELLKDYRV 106
++ +FL HPGG + IK+ D+T H +P + +
Sbjct: 35 DLTRFLPNHPGGQDVIKFNAGKDVTAIFEPLHAPNVIDKYIAPEKKLGPLQGSMPPELVC 94
Query: 107 SDDNPQEYIREEGDIEHLVDWTKPM 131
P E + E L P+
Sbjct: 95 PPYAPGETKEDIARKEQLKSLLPPL 119
>2qf7_A Pyruvate carboxylase protein; multi-domain, multi-functional,
biotin-dependent, ligase; HET: KCX COA AGS; 2.00A
{Rhizobium etli} PDB: 3tw6_A* 3tw7_A*
Length = 1165
Score = 30.4 bits (69), Expect = 1.7
Identities = 20/130 (15%), Positives = 39/130 (30%), Gaps = 21/130 (16%)
Query: 3 QEFLIEHKGQKHNVAKFLKF---HPGGSNTIKYFKNGDITEQLIKTHHSPSAYGHHVPRK 59
+EF I G N+ FL+ HP F++ T + I T R
Sbjct: 435 REFRIR--GVATNLT-FLEAIIGHPK-------FRDNSYTTRFIDTTPELFQQVKRQDRA 484
Query: 60 HNVAKFLKFHPGGSNTIKYFKNGDITEQLIKTHHSPSAYELLKDYRVSDDNPQEYIREEG 119
+ +L T+ + ++ P + D ++ + G
Sbjct: 485 TKLLTYL-----ADVTVNGHPEAKDRPKPLENAARPVVPYANGNGVK--DGTKQLLDTLG 537
Query: 120 DIEHLVDWTK 129
+ +W +
Sbjct: 538 P-KKFGEWMR 546
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 29.1 bits (64), Expect = 1.9
Identities = 5/12 (41%), Positives = 7/12 (58%), Gaps = 2/12 (16%)
Query: 317 LKP--PDNSPLL 326
LK D++P L
Sbjct: 29 LKLYADDSAPAL 40
>4edg_A DNA primase; catalytic domain, nucleoside triphosphate, nucleoside
polyph protein-ligand complex, transferase; HET: DNA
ATP; 2.00A {Staphylococcus aureus} PDB: 4edk_A* 4edr_A*
4edt_A* 4edv_A* 4ee1_A*
Length = 329
Score = 29.5 bits (67), Expect = 2.0
Identities = 15/83 (18%), Positives = 26/83 (31%), Gaps = 12/83 (14%)
Query: 40 EQLIKTHHSPSAYGHHVPRKHNVAKFLKFHPGGSNTIKYFKNGDITEQLIKTHH---SPS 96
Q+I+ H + ++ L G + Y + T+ LIK +P
Sbjct: 6 LQMIEMHELIQEFYYYA---------LTKTVEGEQALTYLQERGFTDALIKERGIGFAPD 56
Query: 97 AYELLKDYRVSDDNPQEYIREEG 119
+ D+ E E G
Sbjct: 57 SSHFCHDFLQKKGYDIELAYEAG 79
>1sox_A Sulfite oxidase; oxidoreductase, sulfite oxidation; HET: MTE HEM
EPE; 1.90A {Gallus gallus} SCOP: b.1.18.6 d.120.1.1
d.176.1.1 PDB: 3hc2_A* 3hbq_A* 3hbg_A* 3hbp_A* 3r18_A*
3r19_A*
Length = 466
Score = 28.6 bits (64), Expect = 4.3
Identities = 12/75 (16%), Positives = 25/75 (33%)
Query: 9 HKGQKHNVAKFLKFHPGGSNTIKYFKNGDITEQLIKTHHSPSAYGHHVPRKHNVAKFLKF 68
H +V F++ HPGG + I G + + + +++ V +
Sbjct: 26 HGTDVFDVTDFVELHPGGPDKILLAAGGALEPFWALYAVHGEPHVLELLQQYKVGELSPD 85
Query: 69 HPGGSNTIKYFKNGD 83
+ + GD
Sbjct: 86 EAPAAPDAQDPFAGD 100
>1y79_1 Peptidyl-dipeptidase DCP; hinge bending, carboxypeptidase,
neurolysin, ACE, hydrolase; HET: TRP; 2.00A {Escherichia
coli}
Length = 680
Score = 28.7 bits (65), Expect = 5.1
Identities = 10/29 (34%), Positives = 11/29 (37%), Gaps = 9/29 (31%)
Query: 318 KPPDNSPLLITL-------H-FGLHGLHH 338
KP P L+ H FG H LH
Sbjct: 450 KPAAGEPALLLWDDVITLFHEFG-HTLHG 477
>2edb_A Netrin receptor DCC; tumor suppressor protein DCC, colorectal
cancer suppressor, structural genomics, NPPSFA; NMR
{Homo sapiens}
Length = 116
Score = 27.0 bits (60), Expect = 5.4
Identities = 7/29 (24%), Positives = 12/29 (41%), Gaps = 2/29 (6%)
Query: 362 YSLATSLFIPTWNAPLVLAGVITGY-LTY 389
+ + +W PL V+ GY + Y
Sbjct: 27 RPQTNCIIM-SWTPPLNPNIVVRGYIIGY 54
>2ed8_A Netrin receptor DCC; tumor suppressor protein DCC, colorectal
cancer suppressor, structural genomics, NPPSFA; NMR
{Homo sapiens}
Length = 106
Score = 26.8 bits (60), Expect = 5.6
Identities = 9/22 (40%), Positives = 11/22 (50%), Gaps = 1/22 (4%)
Query: 365 ATSLFIPTWNAPLVLAGVITGY 386
TS+ I TW P G + GY
Sbjct: 21 PTSILI-TWEPPAYANGPVQGY 41
>3zq4_A Ribonuclease J 1, RNAse J1; hydrolase, RNA maturation; 3.00A
{Bacillus subtilis}
Length = 555
Score = 27.9 bits (63), Expect = 9.1
Identities = 13/49 (26%), Positives = 23/49 (46%), Gaps = 3/49 (6%)
Query: 6 LIEHKGQKHNVAKFLKFHPGGSNTIKYFKNGDITEQLIKTHHS-PSAYG 53
L+ +K ++H + + K + G + I K +T HS P +YG
Sbjct: 103 LLRNKLEEHGLLRQTKLNIIGEDDI--VKFRKTAVSFFRTTHSIPDSYG 149
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.327 0.143 0.490
Gapped
Lambda K H
0.267 0.0752 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 7,631,641
Number of extensions: 471992
Number of successful extensions: 1429
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1419
Number of HSP's successfully gapped: 56
Length of query: 452
Length of database: 6,701,793
Length adjustment: 97
Effective length of query: 355
Effective length of database: 3,993,456
Effective search space: 1417676880
Effective search space used: 1417676880
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 59 (26.5 bits)