RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy2044
(452 letters)
>d1cyoa_ d.120.1.1 (A:) Cytochrome b5 {Cow (Bos taurus) [TaxId:
9913]}
Length = 88
Score = 42.9 bits (101), Expect = 3e-06
Identities = 25/91 (27%), Positives = 43/91 (47%), Gaps = 12/91 (13%)
Query: 27 SNTIKYFKNGDITEQLIKTHHSPS----AYGHHVPRKHNVAKFLKFHPGGSNTIKYFKNG 82
S +KY+ T + I+ H++ + V +++ KFL+ HPGG ++ G
Sbjct: 1 SKAVKYY-----TLEEIQKHNNSKSTWLILHYKV---YDLTKFLEEHPGGEEVLREQAGG 52
Query: 83 DITEQLIKTHHSPSAYELLKDYRVSDDNPQE 113
D TE HS A EL K + + + +P +
Sbjct: 53 DATENFEDVGHSTDARELSKTFIIGELHPDD 83
Score = 31.0 bits (70), Expect = 0.055
Identities = 14/43 (32%), Positives = 21/43 (48%)
Query: 10 KGQKHNVAKFLKFHPGGSNTIKYFKNGDITEQLIKTHHSPSAY 52
+ +++ KFL+ HPGG ++ GD TE HS A
Sbjct: 26 HYKVYDLTKFLEEHPGGEEVLREQAGGDATENFEDVGHSTDAR 68
>d1euea_ d.120.1.1 (A:) Cytochrome b5 {Rat (Rattus norvegicus)
[TaxId: 10116]}
Length = 86
Score = 40.3 bits (94), Expect = 3e-05
Identities = 21/89 (23%), Positives = 36/89 (40%), Gaps = 12/89 (13%)
Query: 29 TIKYFKNGDITEQLIKTHHSPS----AYGHHVPRKHNVAKFLKFHPGGSNTIKYFKNGDI 84
+ Y+ + + ++ V +++ +FL HPGG + D
Sbjct: 3 AVTYY-----RLEEVAKRNTAEETWMVIHGRV---YDITRFLSEHPGGEEILLEQAGADA 54
Query: 85 TEQLIKTHHSPSAYELLKDYRVSDDNPQE 113
TE HSP A E+LK Y + D +P +
Sbjct: 55 TESFEDIGHSPDAREMLKQYYIGDVHPND 83
Score = 30.3 bits (68), Expect = 0.100
Identities = 14/43 (32%), Positives = 20/43 (46%)
Query: 10 KGQKHNVAKFLKFHPGGSNTIKYFKNGDITEQLIKTHHSPSAY 52
G+ +++ +FL HPGG + D TE HSP A
Sbjct: 26 HGRVYDITRFLSEHPGGEEILLEQAGADATESFEDIGHSPDAR 68
>d1cxya_ d.120.1.1 (A:) Cytochrome b558 {Ectothiorhodospira
vacuolata [TaxId: 1054]}
Length = 81
Score = 38.7 bits (90), Expect = 8e-05
Identities = 18/77 (23%), Positives = 32/77 (41%), Gaps = 11/77 (14%)
Query: 38 ITEQLIKTHHSPS----AYGHHVPRKHNVAKFLKFHPGGSNTIKYFKNGDITE----QLI 89
T + + HHSP A V +++ ++ HPG + + + + TE +
Sbjct: 5 FTLEQVAEHHSPDDCWMAIHGKV---YDLTPYVPNHPGPAGMMLVWCGQESTEAWETKSY 61
Query: 90 KTHHSPSAYELLKDYRV 106
HS A LL+ Y +
Sbjct: 62 GEPHSSLAARLLQRYLI 78
Score = 29.1 bits (65), Expect = 0.21
Identities = 9/48 (18%), Positives = 20/48 (41%), Gaps = 4/48 (8%)
Query: 9 HKGQKHNVAKFLKFHPGGSNTIKYFKNGDITE----QLIKTHHSPSAY 52
G+ +++ ++ HPG + + + + TE + HS A
Sbjct: 23 IHGKVYDLTPYVPNHPGPAGMMLVWCGQESTEAWETKSYGEPHSSLAA 70
>d1kbia2 d.120.1.1 (A:1-97) Flavocytochrome b2, N-terminal domain
{Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 97
Score = 37.6 bits (87), Expect = 3e-04
Identities = 15/72 (20%), Positives = 35/72 (48%), Gaps = 4/72 (5%)
Query: 38 ITEQLIKTHHSP-SAYGHHVPRKHNVAKFLKFHPGGSNTIKYFKNGDITEQLIKTHHSPS 96
I+ + H+ P + +++ +FL HPGG + IK+ D+T + + H+P+
Sbjct: 11 ISPAEVAKHNKPDDCWVVINGYVYDLTRFLPNHPGGQDVIKFNAGKDVTA-IFEPLHAPN 69
Query: 97 AYE--LLKDYRV 106
+ + + ++
Sbjct: 70 VIDKYIAPEKKL 81
Score = 32.6 bits (74), Expect = 0.017
Identities = 13/54 (24%), Positives = 28/54 (51%), Gaps = 1/54 (1%)
Query: 9 HKGQKHNVAKFLKFHPGGSNTIKYFKNGDITEQLIKTHHSPSAYGHHVPRKHNV 62
G +++ +FL HPGG + IK+ D+T + + H+P+ ++ + +
Sbjct: 29 INGYVYDLTRFLPNHPGGQDVIKFNAGKDVTA-IFEPLHAPNVIDKYIAPEKKL 81
>d1mj4a_ d.120.1.1 (A:) Sulfite oxidase, N-terminal domain {Human
(Homo sapiens) [TaxId: 9606]}
Length = 80
Score = 37.2 bits (86), Expect = 3e-04
Identities = 13/49 (26%), Positives = 22/49 (44%), Gaps = 2/49 (4%)
Query: 60 HNVAKFLKFHPGGSNTIKYFKNGDIT--EQLIKTHHSPSAYELLKDYRV 106
+V +F+ HPGG + + G + L H+ ELL Y++
Sbjct: 29 FDVTEFVDLHPGGPSKLMLAAGGPLEPFWALYAVHNQSHVRELLAQYKI 77
Score = 29.1 bits (65), Expect = 0.26
Identities = 9/46 (19%), Positives = 17/46 (36%), Gaps = 2/46 (4%)
Query: 9 HKGQKHNVAKFLKFHPGGSNTIKYFKNGDIT--EQLIKTHHSPSAY 52
+ +V +F+ HPGG + + G + L H+
Sbjct: 24 LGSEVFDVTEFVDLHPGGPSKLMLAAGGPLEPFWALYAVHNQSHVR 69
>d1soxa2 d.120.1.1 (A:3-93) Sulfite oxidase, N-terminal domain
{Chicken (Gallus gallus) [TaxId: 9031]}
Length = 91
Score = 36.1 bits (83), Expect = 0.001
Identities = 18/56 (32%), Positives = 27/56 (48%), Gaps = 2/56 (3%)
Query: 60 HNVAKFLKFHPGGSNTIKYFKNGDITE--QLIKTHHSPSAYELLKDYRVSDDNPQE 113
+V F++ HPGG + I G + L H P ELL+ Y+V + +P E
Sbjct: 29 FDVTDFVELHPGGPDKILLAAGGALEPFWALYAVHGEPHVLELLQQYKVGELSPDE 84
Score = 27.6 bits (61), Expect = 0.92
Identities = 12/46 (26%), Positives = 17/46 (36%), Gaps = 2/46 (4%)
Query: 9 HKGQKHNVAKFLKFHPGGSNTIKYFKNGDITE--QLIKTHHSPSAY 52
H +V F++ HPGG + I G + L H P
Sbjct: 24 HGTDVFDVTDFVELHPGGPDKILLAAGGALEPFWALYAVHGEPHVL 69
>d2e9xa1 a.278.1.1 (A:1-144) DNA replication complex GINS protein
PSF1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 144
Score = 28.2 bits (63), Expect = 1.1
Identities = 12/54 (22%), Positives = 22/54 (40%), Gaps = 4/54 (7%)
Query: 78 YFKNGDITEQLIKTHHSPSAYELLKDYRVSDDNPQEYIREEGDIEHLVDWTKPM 131
++ G + ++ H + E +Y + Y+R G E L D T+ M
Sbjct: 91 RWEYGSVLPNALRFHMAAEEMEWFNNY---KRSLATYMRSLGGDEGL-DITQDM 140
>d1jd0a_ b.74.1.1 (A:) Carbonic anhydrase {Human (Homo sapiens),
isozyme XII [TaxId: 9606]}
Length = 260
Score = 27.9 bits (61), Expect = 2.4
Identities = 9/40 (22%), Positives = 19/40 (47%), Gaps = 3/40 (7%)
Query: 388 TYDLIHFYLHYGSPHEGS---YLYNMKRYHNQHHFAHYES 424
Y +LH+G+P++ + + + + + H HY S
Sbjct: 82 RYSATQLHLHWGNPNDPHGSEHTVSGQHFAAELHIVHYNS 121
>d1lnqa2 f.14.1.1 (A:19-98) Potassium channel-related protein MthK
{Archaeon Methanothermobacter thermautotrophicus [TaxId:
145262]}
Length = 80
Score = 25.8 bits (57), Expect = 3.6
Identities = 12/49 (24%), Positives = 21/49 (42%)
Query: 266 LYLWFTTVATVGVHDTSVDISLEASWCCWYYICGLLLWPLLEYTIHRWI 314
LY F T+ATVG D S L + + G+ + + + ++
Sbjct: 32 LYWTFVTIATVGYGDYSPSTPLGMYFTVTLIVLGIGTFAVAVERLLEFL 80
>d1tyea_ b.69.8.1 (A:) Integrin alpha N-terminal domain {Human (Homo
sapiens), isoform IIb [TaxId: 9606]}
Length = 452
Score = 27.6 bits (60), Expect = 3.8
Identities = 10/37 (27%), Positives = 13/37 (35%)
Query: 359 YLGYSLATSLFIPTWNAPLVLAGVITGYLTYDLIHFY 395
Y GYS+A F N + G T T +
Sbjct: 234 YWGYSVAVGEFDGDLNTTEYVVGAPTWSWTLGAVEIL 270
>d1e9yb2 c.1.9.2 (B:132-431,B:481-569) alpha-subunit of urease,
catalytic domain {Helicobacter pylori [TaxId: 210]}
Length = 389
Score = 27.4 bits (61), Expect = 4.2
Identities = 17/69 (24%), Positives = 27/69 (39%), Gaps = 8/69 (11%)
Query: 28 NTIKYFKNGDITEQLIKTHHSPSAYGHHVPRKHNVAKFLKFHPGGSN-TIKYFKNG--DI 84
+T+ + + T H+ A G H P VA P +N TI + N +
Sbjct: 129 DTMAAIAG-----RTMHTFHTEGAGGGHAPDIIKVAGEHNILPASTNPTIPFTVNTEAEH 183
Query: 85 TEQLIKTHH 93
+ L+ HH
Sbjct: 184 MDMLMVCHH 192
>d1flja_ b.74.1.1 (A:) Carbonic anhydrase {Rat (Rattus norvegicus),
isozyme III [TaxId: 10116]}
Length = 259
Score = 27.1 bits (59), Expect = 4.3
Identities = 18/81 (22%), Positives = 36/81 (44%), Gaps = 5/81 (6%)
Query: 349 FPPVPAGILMYLGYSLATSLFIPTWNAPLVLAGVITGYLTYDLIHFYLHYGSP--HEGSY 406
+ P A ++ G + F T++ ++ G ++G Y L F+LH+GS H +
Sbjct: 50 YDPGSAKTILNNGKTCRVV-FDDTFDRSMLRGGPLSG--PYRLRQFHLHWGSSDDHGSEH 106
Query: 407 LYNMKRYHNQHHFAHYESGFG 427
+ +Y + H H+ +
Sbjct: 107 TVDGVKYAAELHLVHWNPKYN 127
>d2dn7a1 b.1.2.1 (A:8-101) Receptor-type tyrosine-protein
phosphatase F, PTPRF {Human (Homo sapiens) [TaxId:
9606]}
Length = 94
Score = 25.6 bits (55), Expect = 5.3
Identities = 11/66 (16%), Positives = 17/66 (25%), Gaps = 7/66 (10%)
Query: 372 TWNAPLVLAGVITGYL----TYDLIHFYLHYGSPHEGSYLYNMKRYHNQHHF---AHYES 424
W+ P L G + GY D + + + F A +
Sbjct: 19 QWHPPKELPGELLGYRLQYCRADEARPNTIDFGKDDQHFTVTGLHKGTTYIFRLAAKNRA 78
Query: 425 GFGISS 430
G G
Sbjct: 79 GLGEEF 84
>d2jbwa1 c.69.1.41 (A:8-367) 2,6-dihydropseudooxynicotine hydrolase
{Arthrobacter nicotinovorans [TaxId: 29320]}
Length = 360
Score = 26.8 bits (58), Expect = 5.6
Identities = 19/180 (10%), Positives = 38/180 (21%), Gaps = 14/180 (7%)
Query: 179 PITLLLLYIGYGRVSHFYMATHTPFTQLSLFTWCCWYYICGLLLWPLLEYTIHRWIFHLK 238
P +++ G + T G + +
Sbjct: 130 PHPAVIMLGGLESTKEESFQMENLVLDRGMATATFDGPGQGEMFEYKRIAGDYEKYTSAV 189
Query: 239 PNNSRMQMTWKLLRYYTRLFVYLVLLVLYLWFTT------VATVGVHD-TSVDISLEASW 291
+ + L ++ G D D+ +
Sbjct: 190 VDLLTKLEAIRNDAIGVLGRSLGGNYALKSAACEPRLAACISWGGFSDLDYWDLETPLTK 249
Query: 292 CCWYYICGLLLWPLLEYTIHRWIFHLKPPDN--SPLLITLHFGLHGLHHKVPFDDGRLLF 349
W Y+ + +H + P I LHG+H +VP +
Sbjct: 250 ESWKYVSKVDTLEEARLHVHAALETRDVLSQIACPTYI-----LHGVHDEVPLSFVDTVL 304
>d2axla1 a.4.5.43 (A:1-144) Werner syndrome ATP-dependent helicase
WRN {Human (Homo sapiens) [TaxId: 9606]}
Length = 144
Score = 26.1 bits (57), Expect = 5.7
Identities = 7/56 (12%), Positives = 16/56 (28%), Gaps = 3/56 (5%)
Query: 397 HYGSPHEGSYLY---NMKRYHNQHHFAHYESGFGISSKFWDHIFGTLIVLRKLNRT 449
+G +L + + + + +G + +W LI L
Sbjct: 28 KFGIGLPILFLRGSNSQRLADQYRRHSLFGTGKDQTESWWKAFSRQLITEGFLVEV 83
>d1hcba_ b.74.1.1 (A:) Carbonic anhydrase {Human (Homo sapiens),
erythrocytes, isozyme I [TaxId: 9606]}
Length = 258
Score = 26.0 bits (56), Expect = 9.5
Identities = 13/44 (29%), Positives = 22/44 (50%), Gaps = 2/44 (4%)
Query: 388 TYDLIHFYLHYGSPHEGS--YLYNMKRYHNQHHFAHYESGFGIS 429
+Y L F+ H+GS +E + + +Y + H AH+ S S
Sbjct: 85 SYRLFQFHFHWGSTNEHGSEHTVDGVKYSAELHVAHWNSAKYSS 128
>d1s04a_ b.122.1.6 (A:) Hypothetical protein PF0455 {Pyrococcus
furiosus [TaxId: 2261]}
Length = 110
Score = 25.0 bits (55), Expect = 9.8
Identities = 9/44 (20%), Positives = 17/44 (38%), Gaps = 3/44 (6%)
Query: 61 NVAKFLKFHPGGSNTIKYFKNGDITEQLIKTHHSPSAYELLKDY 104
K + PG + I F+ G + ++ S E+L+
Sbjct: 27 YDEKRRQIKPG--DVIS-FEGGKLKVRVKAIRVYNSFREMLEKE 67
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.327 0.143 0.490
Gapped
Lambda K H
0.267 0.0441 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,943,359
Number of extensions: 97485
Number of successful extensions: 345
Number of sequences better than 10.0: 1
Number of HSP's gapped: 339
Number of HSP's successfully gapped: 40
Length of query: 452
Length of database: 2,407,596
Length adjustment: 88
Effective length of query: 364
Effective length of database: 1,199,356
Effective search space: 436565584
Effective search space used: 436565584
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 54 (25.3 bits)