Query psy2046
Match_columns 138
No_of_seqs 147 out of 1271
Neff 9.8
Searched_HMMs 46136
Date Fri Aug 16 22:52:21 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy2046.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/2046hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03142 Probable chromatin-re 100.0 2.2E-31 4.7E-36 213.2 11.8 122 17-138 465-587 (1033)
2 KOG0387|consensus 100.0 5.1E-31 1.1E-35 202.0 13.2 122 17-138 524-646 (923)
3 KOG0389|consensus 100.0 7.7E-31 1.7E-35 201.0 13.2 132 7-138 745-876 (941)
4 KOG0385|consensus 100.0 1E-30 2.2E-35 200.0 11.5 138 1-138 439-587 (971)
5 KOG0384|consensus 100.0 2.9E-28 6.3E-33 193.3 9.7 121 18-138 678-799 (1373)
6 PRK04914 ATP-dependent helicas 99.9 3.6E-27 7.9E-32 188.4 11.7 118 19-138 475-593 (956)
7 KOG0331|consensus 99.9 7.3E-27 1.6E-31 175.0 9.9 131 6-138 307-438 (519)
8 KOG0391|consensus 99.9 3.1E-26 6.7E-31 181.3 12.7 120 19-138 1256-1375(1958)
9 KOG0392|consensus 99.9 3.7E-26 8.1E-31 181.4 12.6 120 19-138 1306-1442(1549)
10 KOG0390|consensus 99.9 8.6E-26 1.9E-30 175.5 13.1 119 20-138 575-695 (776)
11 KOG0388|consensus 99.9 1.4E-25 3.1E-30 171.3 10.5 121 17-138 1022-1142(1185)
12 KOG1002|consensus 99.9 1.2E-25 2.6E-30 166.4 9.3 122 17-138 614-737 (791)
13 KOG0333|consensus 99.9 1.3E-24 2.8E-29 161.4 9.7 122 13-138 493-614 (673)
14 COG0553 HepA Superfamily II DN 99.9 1.2E-23 2.5E-28 168.7 12.7 120 19-138 687-810 (866)
15 cd00079 HELICc Helicase superf 99.9 2E-23 4.4E-28 132.7 10.8 114 23-138 12-125 (131)
16 PTZ00110 helicase; Provisional 99.9 1.7E-23 3.6E-28 161.0 11.6 119 18-138 356-474 (545)
17 KOG0328|consensus 99.9 7.4E-23 1.6E-27 142.6 9.1 112 23-138 252-363 (400)
18 KOG1000|consensus 99.9 1.3E-22 2.8E-27 150.1 10.1 117 22-138 471-591 (689)
19 KOG4439|consensus 99.9 2E-22 4.2E-27 153.8 11.0 122 17-138 723-846 (901)
20 KOG0386|consensus 99.9 6.1E-23 1.3E-27 161.0 8.3 138 1-138 677-826 (1157)
21 COG0513 SrmB Superfamily II DN 99.9 1.6E-22 3.6E-27 154.5 10.5 112 23-138 259-370 (513)
22 PRK04837 ATP-dependent RNA hel 99.9 2.2E-22 4.8E-27 150.9 10.8 113 22-138 240-352 (423)
23 PF00271 Helicase_C: Helicase 99.9 1.2E-22 2.6E-27 118.9 6.0 78 57-136 1-78 (78)
24 KOG0330|consensus 99.9 5.3E-22 1.2E-26 143.1 8.1 113 21-137 284-396 (476)
25 PLN00206 DEAD-box ATP-dependen 99.9 1.4E-21 3.1E-26 149.7 10.9 117 20-138 348-465 (518)
26 PRK11776 ATP-dependent RNA hel 99.9 2.3E-21 5E-26 146.8 11.8 113 22-138 227-339 (460)
27 KOG1015|consensus 99.9 2.2E-21 4.8E-26 152.0 11.1 122 17-138 1120-1265(1567)
28 PRK04537 ATP-dependent RNA hel 99.9 2.3E-21 5E-26 149.9 11.1 113 22-138 242-354 (572)
29 PRK11192 ATP-dependent RNA hel 99.9 3.6E-21 7.8E-26 144.8 11.6 111 23-137 231-341 (434)
30 PRK01297 ATP-dependent RNA hel 99.9 7.7E-21 1.7E-25 144.4 12.3 114 21-138 319-432 (475)
31 PRK10590 ATP-dependent RNA hel 99.9 5E-21 1.1E-25 144.8 10.9 98 39-138 245-342 (456)
32 PRK13766 Hef nuclease; Provisi 99.8 1.3E-20 2.9E-25 150.2 12.7 117 19-137 343-469 (773)
33 KOG0336|consensus 99.8 1.2E-21 2.5E-26 142.6 5.8 130 6-138 433-562 (629)
34 KOG0341|consensus 99.8 1.8E-21 3.9E-26 140.8 6.5 117 17-138 402-518 (610)
35 TIGR00614 recQ_fam ATP-depende 99.8 1.3E-20 2.7E-25 143.1 11.1 111 25-138 213-323 (470)
36 KOG0335|consensus 99.8 6.7E-21 1.5E-25 141.4 8.6 124 13-138 304-434 (482)
37 PRK11634 ATP-dependent RNA hel 99.8 3.7E-20 8.1E-25 144.3 11.6 112 23-138 231-342 (629)
38 PRK11057 ATP-dependent DNA hel 99.8 6.3E-20 1.4E-24 142.9 12.6 111 23-137 222-332 (607)
39 smart00490 HELICc helicase sup 99.8 5.7E-20 1.2E-24 107.8 7.4 81 54-136 2-82 (82)
40 TIGR01389 recQ ATP-dependent D 99.8 1.7E-19 3.8E-24 140.2 11.8 113 21-137 208-320 (591)
41 KOG0326|consensus 99.8 1.2E-20 2.7E-25 133.5 4.8 127 7-137 292-418 (459)
42 TIGR00603 rad25 DNA repair hel 99.8 1.9E-19 4.1E-24 140.8 11.7 113 19-137 476-589 (732)
43 COG1111 MPH1 ERCC4-like helica 99.8 2E-19 4.4E-24 133.5 11.1 115 19-135 344-469 (542)
44 PTZ00424 helicase 45; Provisio 99.8 2.2E-19 4.8E-24 133.7 10.8 110 24-137 254-363 (401)
45 KOG0342|consensus 99.8 1.1E-19 2.3E-24 134.3 8.2 113 22-137 314-426 (543)
46 PLN03137 ATP-dependent DNA hel 99.8 2.8E-19 6.2E-24 143.9 11.3 98 39-138 680-777 (1195)
47 KOG0332|consensus 99.8 6.4E-19 1.4E-23 126.9 9.6 116 19-138 312-433 (477)
48 TIGR03817 DECH_helic helicase/ 99.8 9.3E-19 2E-23 138.7 10.5 109 28-138 260-376 (742)
49 KOG0340|consensus 99.8 1.4E-18 3E-23 124.4 10.1 116 20-137 234-350 (442)
50 PHA02558 uvsW UvsW helicase; P 99.8 2.6E-18 5.7E-23 131.3 12.3 115 22-137 327-441 (501)
51 KOG1001|consensus 99.8 1.5E-20 3.2E-25 146.3 -0.2 118 21-138 520-638 (674)
52 KOG0345|consensus 99.8 4.2E-18 9.2E-23 125.5 9.6 117 17-137 235-353 (567)
53 PRK12898 secA preprotein trans 99.7 1.4E-17 3E-22 129.1 11.0 114 20-137 454-575 (656)
54 PRK09200 preprotein translocas 99.7 1E-17 2.2E-22 132.2 10.4 116 19-138 408-531 (790)
55 KOG0348|consensus 99.7 3.6E-17 7.7E-22 122.4 11.5 117 19-137 401-543 (708)
56 PRK13767 ATP-dependent helicas 99.7 4.8E-17 1E-21 131.1 11.4 109 26-136 271-385 (876)
57 TIGR00963 secA preprotein tran 99.7 1.1E-16 2.4E-21 125.1 11.2 114 21-138 387-507 (745)
58 KOG0338|consensus 99.7 6.4E-17 1.4E-21 120.6 8.7 109 25-137 414-522 (691)
59 COG0514 RecQ Superfamily II DN 99.7 1.7E-16 3.7E-21 121.4 11.3 97 39-137 230-326 (590)
60 TIGR01587 cas3_core CRISPR-ass 99.7 2.3E-16 5.1E-21 116.0 11.5 109 23-137 207-321 (358)
61 KOG0344|consensus 99.7 1.2E-16 2.5E-21 120.4 10.0 114 21-138 371-485 (593)
62 TIGR00580 mfd transcription-re 99.7 2E-16 4.4E-21 127.4 11.8 101 36-138 657-760 (926)
63 KOG0327|consensus 99.7 7.1E-17 1.5E-21 116.4 8.3 111 22-138 250-360 (397)
64 TIGR00631 uvrb excinuclease AB 99.7 2.1E-16 4.6E-21 123.7 11.4 114 21-136 424-542 (655)
65 KOG0347|consensus 99.7 2.4E-17 5.1E-22 123.7 5.6 96 40-137 464-559 (731)
66 TIGR03714 secA2 accessory Sec 99.7 1.9E-16 4.1E-21 124.4 10.3 114 19-137 404-526 (762)
67 PRK10917 ATP-dependent DNA hel 99.7 5.6E-16 1.2E-20 122.2 13.0 114 22-137 454-578 (681)
68 PRK10689 transcription-repair 99.7 4.7E-16 1E-20 127.5 12.3 106 30-138 801-909 (1147)
69 KOG4284|consensus 99.7 5.8E-17 1.3E-21 123.7 6.3 110 24-137 259-368 (980)
70 PRK05298 excinuclease ABC subu 99.7 5.7E-16 1.2E-20 121.5 12.0 112 22-135 429-545 (652)
71 KOG1016|consensus 99.7 3.5E-17 7.7E-22 126.9 4.5 121 18-138 698-837 (1387)
72 KOG0334|consensus 99.7 1.7E-16 3.6E-21 125.8 8.1 126 10-138 584-710 (997)
73 KOG0343|consensus 99.7 4.2E-16 9.1E-21 117.2 9.6 115 19-137 295-411 (758)
74 TIGR00643 recG ATP-dependent D 99.7 1.4E-15 3.1E-20 119.1 12.8 112 24-137 433-555 (630)
75 KOG0350|consensus 99.7 3.3E-16 7.1E-21 116.5 7.9 112 23-138 415-530 (620)
76 PRK12906 secA preprotein trans 99.7 7.9E-16 1.7E-20 121.3 10.3 114 20-137 421-542 (796)
77 KOG0339|consensus 99.6 6E-16 1.3E-20 115.5 8.1 114 21-137 451-564 (731)
78 KOG0354|consensus 99.6 3.3E-15 7.2E-20 116.2 11.2 113 20-135 392-517 (746)
79 TIGR02621 cas3_GSU0051 CRISPR- 99.6 3.6E-15 7.7E-20 118.3 10.9 109 24-137 256-379 (844)
80 PRK12900 secA preprotein trans 99.6 6.8E-15 1.5E-19 117.4 10.3 113 21-137 580-700 (1025)
81 PRK09751 putative ATP-dependen 99.6 6.6E-15 1.4E-19 122.4 10.4 97 37-135 242-371 (1490)
82 KOG1123|consensus 99.6 1.5E-14 3.3E-19 108.2 10.7 113 17-135 521-634 (776)
83 COG1061 SSL2 DNA or RNA helica 99.6 2.2E-14 4.7E-19 108.3 11.5 110 22-135 267-376 (442)
84 PRK02362 ski2-like helicase; P 99.6 1.1E-14 2.3E-19 116.1 10.3 107 29-137 233-384 (737)
85 KOG0349|consensus 99.5 3.1E-14 6.7E-19 105.0 8.1 95 39-135 505-602 (725)
86 COG1202 Superfamily II helicas 99.5 1.1E-14 2.3E-19 110.4 5.7 113 21-136 416-539 (830)
87 TIGR01970 DEAH_box_HrpB ATP-de 99.5 8.5E-14 1.8E-18 111.3 11.1 97 38-136 208-325 (819)
88 PRK01172 ski2-like helicase; P 99.5 1.2E-13 2.7E-18 109.1 10.7 107 28-137 225-365 (674)
89 PHA02653 RNA helicase NPH-II; 99.5 1E-13 2.2E-18 108.8 10.0 94 38-135 394-502 (675)
90 KOG0346|consensus 99.5 5.2E-14 1.1E-18 103.6 7.5 117 18-137 248-399 (569)
91 PRK11664 ATP-dependent RNA hel 99.5 2.5E-13 5.5E-18 108.7 9.8 97 38-136 211-328 (812)
92 PRK12904 preprotein translocas 99.5 6.2E-13 1.3E-17 105.5 10.7 114 20-137 411-562 (830)
93 COG1201 Lhr Lhr-like helicases 99.5 5.8E-13 1.3E-17 105.5 10.4 112 24-137 238-351 (814)
94 PRK00254 ski2-like helicase; P 99.5 5.1E-13 1.1E-17 106.3 10.1 108 28-137 227-375 (720)
95 KOG0337|consensus 99.5 9.5E-14 2.1E-18 101.7 5.1 115 21-138 244-358 (529)
96 PRK13104 secA preprotein trans 99.5 6.4E-13 1.4E-17 105.8 10.1 115 19-137 424-576 (896)
97 KOG0351|consensus 99.4 2.8E-13 6.1E-18 108.9 7.9 125 11-137 453-581 (941)
98 PRK13107 preprotein translocas 99.4 1.2E-12 2.5E-17 104.3 10.2 115 19-137 429-580 (908)
99 KOG0298|consensus 99.4 3.8E-13 8.3E-18 108.7 7.1 113 20-138 1200-1314(1394)
100 TIGR03158 cas3_cyano CRISPR-as 99.4 2.8E-12 6E-17 94.6 10.1 85 38-133 271-357 (357)
101 PRK09694 helicase Cas3; Provis 99.4 5.1E-12 1.1E-16 101.6 12.0 107 28-137 549-664 (878)
102 COG1200 RecG RecG-like helicas 99.3 1.4E-11 3E-16 95.3 11.2 119 17-137 451-580 (677)
103 PRK11131 ATP-dependent RNA hel 99.3 1.2E-11 2.6E-16 102.1 9.3 108 25-136 271-400 (1294)
104 PRK09401 reverse gyrase; Revie 99.3 2.3E-11 5E-16 100.6 10.8 102 23-133 315-429 (1176)
105 TIGR01967 DEAH_box_HrpA ATP-de 99.3 2.2E-11 4.9E-16 100.6 10.6 109 24-136 263-393 (1283)
106 PRK11448 hsdR type I restricti 99.3 5.4E-11 1.2E-15 98.1 11.7 94 39-135 698-800 (1123)
107 KOG0953|consensus 99.2 3.1E-11 6.8E-16 91.4 7.3 98 37-137 356-463 (700)
108 PRK14701 reverse gyrase; Provi 99.2 7E-11 1.5E-15 100.1 9.8 102 26-137 320-445 (1638)
109 KOG0352|consensus 99.2 2.1E-11 4.5E-16 90.1 5.3 95 41-137 257-351 (641)
110 COG4098 comFA Superfamily II D 99.2 4E-10 8.6E-15 81.3 10.2 105 27-135 293-401 (441)
111 TIGR01054 rgy reverse gyrase. 99.2 3.8E-10 8.1E-15 93.6 11.3 88 25-120 315-409 (1171)
112 COG1197 Mfd Transcription-repa 99.1 6.8E-10 1.5E-14 90.3 11.4 105 30-137 795-902 (1139)
113 TIGR00595 priA primosomal prot 99.1 5.6E-10 1.2E-14 85.8 10.2 83 52-136 271-369 (505)
114 COG0556 UvrB Helicase subunit 99.1 4.8E-09 1E-13 79.6 13.4 110 24-135 428-545 (663)
115 PRK05580 primosome assembly pr 99.0 1.1E-08 2.4E-13 81.2 11.6 84 51-136 438-537 (679)
116 COG1204 Superfamily II helicas 98.9 3.9E-09 8.4E-14 84.4 8.0 110 24-136 238-394 (766)
117 PRK12903 secA preprotein trans 98.9 1.1E-08 2.4E-13 81.7 9.5 115 19-137 406-528 (925)
118 COG1205 Distinct helicase fami 98.9 6.7E-09 1.5E-13 84.0 7.7 114 23-138 290-412 (851)
119 KOG0383|consensus 98.8 2.6E-09 5.7E-14 83.7 2.8 86 18-104 610-696 (696)
120 PRK12326 preprotein translocas 98.8 6.7E-08 1.5E-12 76.2 10.5 115 19-137 407-536 (764)
121 COG1203 CRISPR-associated heli 98.7 8.8E-08 1.9E-12 76.8 9.8 103 31-136 432-536 (733)
122 KOG0353|consensus 98.7 6.6E-08 1.4E-12 71.1 6.1 104 27-132 303-408 (695)
123 PRK12899 secA preprotein trans 98.6 2.3E-07 5E-12 75.0 9.4 113 20-137 549-670 (970)
124 KOG0329|consensus 98.6 3.4E-08 7.3E-13 69.1 2.7 43 95-137 302-344 (387)
125 PRK12901 secA preprotein trans 98.6 2.6E-07 5.6E-12 75.2 8.0 114 20-137 609-730 (1112)
126 KOG4150|consensus 98.6 3.7E-07 8E-12 70.3 7.9 118 17-136 503-628 (1034)
127 PRK13103 secA preprotein trans 98.6 3.1E-07 6.6E-12 74.1 7.7 114 19-137 429-580 (913)
128 PF13871 Helicase_C_4: Helicas 98.6 6.7E-08 1.5E-12 68.7 3.6 57 80-138 52-116 (278)
129 COG4096 HsdR Type I site-speci 98.4 2.2E-06 4.7E-11 68.3 8.4 110 24-135 405-525 (875)
130 TIGR00348 hsdR type I site-spe 98.4 1.2E-05 2.6E-10 64.1 12.2 95 39-135 514-634 (667)
131 CHL00122 secA preprotein trans 98.4 6.6E-06 1.4E-10 66.3 10.6 86 20-108 405-491 (870)
132 KOG0951|consensus 98.3 3.9E-06 8.5E-11 69.4 9.2 94 40-136 547-688 (1674)
133 TIGR01407 dinG_rel DnaQ family 98.3 9.9E-06 2.1E-10 66.2 11.4 90 27-121 661-757 (850)
134 KOG0950|consensus 98.3 1.5E-06 3.3E-11 69.9 6.1 69 65-136 524-597 (1008)
135 KOG0952|consensus 98.3 6.5E-06 1.4E-10 67.1 9.1 102 32-136 342-477 (1230)
136 PF13307 Helicase_C_2: Helicas 98.3 4E-06 8.7E-11 55.7 6.7 81 37-121 7-93 (167)
137 PRK08074 bifunctional ATP-depe 98.1 5.6E-05 1.2E-09 62.4 12.1 96 26-123 738-839 (928)
138 COG1199 DinG Rad3-related DNA 98.1 3.8E-05 8.3E-10 61.1 10.1 93 25-121 464-560 (654)
139 COG1643 HrpA HrpA-like helicas 98.0 2.5E-05 5.5E-10 63.3 8.0 108 27-136 246-376 (845)
140 PRK07246 bifunctional ATP-depe 98.0 0.00013 2.9E-09 59.5 11.5 91 26-121 634-726 (820)
141 PRK12902 secA preprotein trans 97.9 0.00027 5.9E-09 57.5 10.7 85 21-108 421-506 (939)
142 TIGR00604 rad3 DNA repair heli 97.8 0.0004 8.7E-09 55.9 10.8 94 25-120 507-615 (705)
143 KOG0947|consensus 97.7 0.00017 3.6E-09 58.9 7.9 107 27-136 554-709 (1248)
144 COG1110 Reverse gyrase [DNA re 97.7 0.00046 9.9E-09 56.7 9.9 88 23-119 322-416 (1187)
145 KOG0949|consensus 97.7 0.0001 2.2E-09 60.2 5.8 70 66-137 965-1035(1330)
146 COG0653 SecA Preprotein transl 97.6 0.00017 3.7E-09 58.2 6.1 115 19-137 409-534 (822)
147 PF06862 DUF1253: Protein of u 97.5 0.004 8.7E-08 47.4 12.2 109 21-131 279-392 (442)
148 PF11496 HDA2-3: Class II hist 97.4 0.001 2.3E-08 48.2 7.8 110 17-126 90-222 (297)
149 KOG0923|consensus 97.4 0.00052 1.1E-08 54.2 6.4 94 39-136 473-595 (902)
150 TIGR00596 rad1 DNA repair prot 97.4 0.00025 5.3E-09 57.7 4.7 43 19-61 266-317 (814)
151 KOG0920|consensus 97.4 0.00043 9.2E-09 56.6 5.9 111 23-135 395-532 (924)
152 KOG0922|consensus 97.4 0.0012 2.7E-08 51.9 8.2 74 39-114 258-339 (674)
153 KOG0948|consensus 97.4 0.00026 5.7E-09 56.5 4.4 106 28-136 371-525 (1041)
154 PRK11747 dinG ATP-dependent DN 97.3 0.0062 1.4E-07 49.2 11.9 91 25-121 520-617 (697)
155 COG4889 Predicted helicase [Ge 97.1 0.00095 2.1E-08 54.5 5.0 71 65-135 501-572 (1518)
156 TIGR00595 priA primosomal prot 97.0 0.021 4.6E-07 44.5 11.6 95 20-117 6-101 (505)
157 TIGR03117 cas_csf4 CRISPR-asso 97.0 0.026 5.7E-07 45.1 12.2 95 27-126 457-567 (636)
158 PRK05580 primosome assembly pr 97.0 0.027 5.8E-07 45.5 12.2 94 21-117 172-266 (679)
159 PRK10917 ATP-dependent DNA hel 96.9 0.019 4.1E-07 46.3 11.0 97 21-118 292-392 (681)
160 COG1198 PriA Primosomal protei 96.9 0.0043 9.2E-08 50.1 7.2 83 52-136 493-591 (730)
161 PRK14873 primosome assembly pr 96.9 0.017 3.7E-07 46.4 10.1 76 21-97 170-247 (665)
162 COG1198 PriA Primosomal protei 96.8 0.0063 1.4E-07 49.1 7.5 80 19-99 225-305 (730)
163 PF02399 Herpes_ori_bp: Origin 96.6 0.043 9.4E-07 44.7 10.4 103 25-136 269-377 (824)
164 KOG1513|consensus 96.6 0.0014 3.1E-08 52.9 2.1 54 82-137 850-911 (1300)
165 KOG0924|consensus 96.5 0.0038 8.3E-08 49.8 4.3 95 40-136 564-686 (1042)
166 TIGR00643 recG ATP-dependent D 96.5 0.058 1.3E-06 43.2 10.7 98 20-118 265-366 (630)
167 KOG0926|consensus 96.5 0.0021 4.5E-08 52.1 2.4 69 66-136 607-693 (1172)
168 smart00492 HELICc3 helicase su 96.4 0.058 1.2E-06 34.9 8.7 52 67-120 26-79 (141)
169 COG4581 Superfamily II RNA hel 96.3 0.0082 1.8E-07 50.0 5.1 69 67-138 448-525 (1041)
170 TIGR00580 mfd transcription-re 95.9 0.18 3.8E-06 42.3 10.9 96 21-117 482-581 (926)
171 smart00491 HELICc2 helicase su 95.8 0.11 2.3E-06 33.7 7.7 53 67-120 23-80 (142)
172 PRK10689 transcription-repair 95.3 0.39 8.5E-06 41.2 11.1 95 21-116 631-729 (1147)
173 KOG1133|consensus 94.4 1.5 3.3E-05 35.6 11.5 95 24-121 613-721 (821)
174 TIGR02562 cas3_yersinia CRISPR 93.8 0.42 9E-06 40.5 7.8 91 43-137 761-881 (1110)
175 PF10593 Z1: Z1 domain; Inter 93.3 0.33 7.1E-06 34.3 5.6 82 44-132 92-175 (239)
176 TIGR00365 monothiol glutaredox 93.2 1.1 2.3E-05 26.9 8.1 47 39-85 11-63 (97)
177 cd03028 GRX_PICOT_like Glutare 93.1 1 2.3E-05 26.5 7.1 45 39-83 7-57 (90)
178 COG1200 RecG RecG-like helicas 93.1 2.4 5.3E-05 34.3 10.6 93 22-115 294-390 (677)
179 PRK14701 reverse gyrase; Provi 92.3 2.3 5E-05 38.1 10.4 79 21-100 104-188 (1638)
180 TIGR01054 rgy reverse gyrase. 91.6 2.7 5.9E-05 36.5 9.9 81 21-102 103-190 (1171)
181 TIGR00614 recQ_fam ATP-depende 91.5 4.1 9E-05 31.5 10.2 79 39-118 51-136 (470)
182 COG1197 Mfd Transcription-repa 91.4 3.4 7.4E-05 35.5 10.1 93 22-115 626-722 (1139)
183 KOG2340|consensus 91.4 0.52 1.1E-05 37.1 5.1 103 23-126 534-639 (698)
184 KOG0925|consensus 91.3 2.5 5.5E-05 33.2 8.6 88 23-114 235-336 (699)
185 PRK05728 DNA polymerase III su 91.2 0.83 1.8E-05 29.5 5.3 41 20-60 10-50 (142)
186 PRK10824 glutaredoxin-4; Provi 91.2 2.4 5.2E-05 26.4 7.4 56 39-95 14-76 (115)
187 PRK06646 DNA polymerase III su 91.1 0.93 2E-05 29.8 5.5 41 19-59 9-49 (154)
188 COG1110 Reverse gyrase [DNA re 90.9 2.9 6.3E-05 35.6 9.0 77 23-100 109-191 (1187)
189 cd03418 GRX_GRXb_1_3_like Glut 90.8 1.8 3.8E-05 24.1 7.0 45 42-86 2-47 (75)
190 KOG0352|consensus 90.5 0.95 2.1E-05 34.9 5.6 74 28-102 51-125 (641)
191 KOG0347|consensus 89.9 2.2 4.7E-05 34.0 7.2 58 38-100 260-323 (731)
192 COG2179 Predicted hydrolase of 89.8 4.3 9.3E-05 27.2 7.6 70 24-95 47-116 (175)
193 PRK11776 ATP-dependent RNA hel 88.2 9.1 0.0002 29.5 9.8 93 21-118 51-156 (460)
194 PF13245 AAA_19: Part of AAA d 88.0 1.3 2.9E-05 25.3 3.9 39 21-59 20-62 (76)
195 PF04364 DNA_pol3_chi: DNA pol 87.9 1.7 3.6E-05 27.9 4.8 37 25-61 15-51 (137)
196 cd01524 RHOD_Pyr_redox Member 87.8 1.1 2.4E-05 26.1 3.6 38 37-74 49-86 (90)
197 cd06533 Glyco_transf_WecG_TagA 87.4 6.6 0.00014 26.1 9.8 74 25-99 32-108 (171)
198 COG0513 SrmB Superfamily II DN 87.1 12 0.00026 29.5 9.9 89 22-115 77-180 (513)
199 cd03031 GRX_GRX_like Glutaredo 86.6 6.5 0.00014 25.6 7.0 46 41-86 1-53 (147)
200 PF03808 Glyco_tran_WecB: Glyc 86.4 7.5 0.00016 25.8 9.6 73 25-98 34-109 (172)
201 cd00046 DEXDc DEAD-like helica 86.3 5.5 0.00012 24.1 8.6 80 21-105 10-94 (144)
202 TIGR00696 wecB_tagA_cpsF bacte 84.3 10 0.00022 25.5 10.0 73 25-98 34-108 (177)
203 KOG0780|consensus 84.3 8.5 0.00019 29.5 7.4 77 22-99 112-192 (483)
204 PTZ00062 glutaredoxin; Provisi 84.3 11 0.00024 26.0 9.3 68 28-97 102-175 (204)
205 TIGR01389 recQ ATP-dependent D 84.1 16 0.00034 29.3 9.4 62 39-101 53-114 (591)
206 cd01523 RHOD_Lact_B Member of 83.8 2 4.3E-05 25.5 3.4 38 37-74 59-96 (100)
207 KOG0701|consensus 82.7 0.66 1.4E-05 41.0 1.3 93 41-135 294-398 (1606)
208 TIGR03817 DECH_helic helicase/ 82.6 15 0.00033 30.4 9.0 92 21-118 61-166 (742)
209 COG0514 RecQ Superfamily II DN 82.3 5.7 0.00012 31.9 6.2 61 41-102 59-119 (590)
210 PRK09189 uroporphyrinogen-III 82.3 7.8 0.00017 27.0 6.4 76 24-100 103-181 (240)
211 PF07652 Flavi_DEAD: Flaviviru 81.7 11 0.00024 24.6 6.4 100 21-132 14-118 (148)
212 cd03027 GRX_DEP Glutaredoxin ( 81.6 7 0.00015 21.7 7.0 44 41-84 2-46 (73)
213 cd01534 4RHOD_Repeat_3 Member 81.4 3 6.6E-05 24.4 3.6 36 39-74 56-91 (95)
214 cd01528 RHOD_2 Member of the R 81.1 7 0.00015 23.1 5.2 37 38-74 57-94 (101)
215 COG1435 Tdk Thymidine kinase [ 81.1 5 0.00011 27.6 4.8 34 19-52 12-45 (201)
216 smart00450 RHOD Rhodanese Homo 80.4 3.3 7.2E-05 23.8 3.5 38 37-74 54-92 (100)
217 cd01520 RHOD_YbbB Member of th 80.3 7.3 0.00016 24.3 5.2 38 37-74 84-122 (128)
218 PRK09401 reverse gyrase; Revie 80.1 34 0.00074 30.1 10.4 95 20-115 104-207 (1176)
219 cd01529 4RHOD_Repeats Member o 79.9 5.1 0.00011 23.5 4.2 38 37-74 54-92 (96)
220 COG2247 LytB Putative cell wal 79.4 10 0.00022 28.1 6.1 60 38-97 75-139 (337)
221 PRK01122 potassium-transportin 79.4 32 0.00068 28.4 9.6 61 30-90 415-508 (679)
222 cd00268 DEADc DEAD-box helicas 79.2 16 0.00035 24.4 9.3 95 20-119 45-153 (203)
223 TIGR00376 DNA helicase, putati 78.8 9.8 0.00021 30.9 6.6 51 22-72 184-234 (637)
224 cd01533 4RHOD_Repeat_2 Member 78.8 8.8 0.00019 23.1 5.1 36 39-74 66-103 (109)
225 PRK13766 Hef nuclease; Provisi 78.7 36 0.00079 28.2 10.6 93 21-119 39-141 (773)
226 COG0608 RecJ Single-stranded D 78.4 18 0.00039 28.4 7.8 93 23-119 20-122 (491)
227 PF11019 DUF2608: Protein of u 78.2 13 0.00028 26.5 6.4 53 18-70 157-209 (252)
228 COG0610 Type I site-specific r 77.7 5.8 0.00013 33.8 5.2 57 77-135 579-636 (962)
229 COG2927 HolC DNA polymerase II 77.4 11 0.00024 24.5 5.3 34 27-60 17-50 (144)
230 PRK06381 threonine synthase; V 77.1 26 0.00056 25.6 8.1 66 20-85 43-108 (319)
231 PRK04537 ATP-dependent RNA hel 77.0 36 0.00079 27.3 9.9 71 40-115 85-165 (572)
232 PRK13958 N-(5'-phosphoribosyl) 76.8 15 0.00033 25.3 6.3 51 26-78 40-90 (207)
233 PRK10638 glutaredoxin 3; Provi 76.6 12 0.00025 21.4 6.7 43 41-83 3-46 (83)
234 PRK11057 ATP-dependent DNA hel 76.6 38 0.00081 27.4 9.3 61 39-100 65-125 (607)
235 TIGR01138 cysM cysteine syntha 76.3 26 0.00057 25.3 8.0 66 20-85 35-104 (290)
236 cd00158 RHOD Rhodanese Homolog 76.2 7.4 0.00016 21.9 4.1 38 37-74 48-86 (89)
237 PF09419 PGP_phosphatase: Mito 76.2 20 0.00044 23.9 8.0 58 27-88 63-130 (168)
238 COG4098 comFA Superfamily II D 76.0 9.6 0.00021 28.8 5.3 59 18-76 123-183 (441)
239 cd01449 TST_Repeat_2 Thiosulfa 75.8 11 0.00025 22.8 5.1 47 27-73 65-113 (118)
240 COG1205 Distinct helicase fami 75.7 22 0.00047 30.1 7.9 79 20-103 94-180 (851)
241 cd01518 RHOD_YceA Member of th 75.6 4.6 0.0001 23.9 3.2 38 37-74 59-97 (101)
242 COG1111 MPH1 ERCC4-like helica 75.2 37 0.0008 27.0 8.4 91 23-119 41-141 (542)
243 PRK01222 N-(5'-phosphoribosyl) 75.2 19 0.00042 24.8 6.5 50 27-78 43-92 (210)
244 cd01521 RHOD_PspE2 Member of t 75.1 6.5 0.00014 23.8 3.8 38 37-74 62-101 (110)
245 PRK09751 putative ATP-dependen 74.8 32 0.00069 31.1 8.8 74 39-117 37-132 (1490)
246 cd00640 Trp-synth-beta_II Tryp 74.6 26 0.00056 24.4 8.3 65 21-85 28-95 (244)
247 PF00462 Glutaredoxin: Glutare 74.5 11 0.00023 19.9 6.9 49 43-91 2-51 (60)
248 PLN02356 phosphateglycerate ki 74.1 39 0.00084 26.2 8.4 66 20-85 80-149 (423)
249 PRK11634 ATP-dependent RNA hel 74.0 47 0.001 27.1 10.0 90 21-115 53-155 (629)
250 cd06448 L-Ser-dehyd Serine deh 73.9 33 0.00071 25.2 7.8 66 20-85 28-96 (316)
251 COG0626 MetC Cystathionine bet 73.8 38 0.00083 26.0 8.2 103 22-130 62-169 (396)
252 PF10740 DUF2529: Protein of u 73.7 7.6 0.00016 26.0 4.0 33 38-70 81-115 (172)
253 PF02875 Mur_ligase_C: Mur lig 73.0 7.4 0.00016 22.7 3.6 60 15-75 17-83 (91)
254 COG0553 HepA Superfamily II DN 72.8 0.53 1.1E-05 38.7 -1.9 39 97-137 485-523 (866)
255 cd01526 RHOD_ThiF Member of th 72.0 4.9 0.00011 24.9 2.7 38 37-74 70-109 (122)
256 cd01519 RHOD_HSP67B2 Member of 71.7 8.6 0.00019 22.8 3.8 36 38-73 65-101 (106)
257 PLN03137 ATP-dependent DNA hel 71.1 64 0.0014 28.5 9.5 63 39-101 500-563 (1195)
258 PRK10287 thiosulfate:cyanide s 71.0 21 0.00045 21.7 5.3 46 28-73 48-94 (104)
259 TIGR03167 tRNA_sel_U_synt tRNA 70.8 17 0.00037 26.8 5.7 49 37-86 72-121 (311)
260 PRK10329 glutaredoxin-like pro 70.8 18 0.00038 20.8 6.4 41 41-81 2-43 (81)
261 PRK11761 cysM cysteine synthas 70.4 39 0.00084 24.6 8.0 66 20-85 39-108 (296)
262 cd01535 4RHOD_Repeat_4 Member 70.2 17 0.00037 23.4 5.0 47 27-74 38-85 (145)
263 cd01527 RHOD_YgaP Member of th 70.2 12 0.00026 21.9 4.1 38 37-74 52-90 (99)
264 cd03030 GRX_SH3BGR Glutaredoxi 70.1 20 0.00044 21.3 7.0 37 50-86 17-53 (92)
265 cd01447 Polysulfide_ST Polysul 70.1 6.3 0.00014 23.2 2.9 38 37-74 59-97 (103)
266 PRK15483 type III restriction- 69.9 5.4 0.00012 33.9 3.2 45 91-135 501-545 (986)
267 PF13344 Hydrolase_6: Haloacid 69.7 8.9 0.00019 23.1 3.4 42 25-66 16-58 (101)
268 COG0300 DltE Short-chain dehyd 69.3 40 0.00087 24.3 9.1 82 20-106 13-97 (265)
269 cd01561 CBS_like CBS_like: Thi 68.9 41 0.00088 24.2 8.1 65 21-85 30-98 (291)
270 PRK11070 ssDNA exonuclease Rec 68.9 61 0.0013 26.2 9.2 42 23-64 53-98 (575)
271 cd01563 Thr-synth_1 Threonine 68.8 43 0.00093 24.5 7.7 66 20-85 50-115 (324)
272 COG1560 HtrB Lauroyl/myristoyl 68.7 38 0.00081 25.0 7.0 44 30-73 113-156 (308)
273 PF09413 DUF2007: Domain of un 68.7 13 0.00029 20.2 3.8 32 42-73 2-33 (67)
274 KOG0339|consensus 68.5 44 0.00095 26.9 7.5 73 39-116 296-377 (731)
275 TIGR02981 phageshock_pspE phag 68.5 23 0.0005 21.3 5.5 36 38-73 57-92 (101)
276 COG0541 Ffh Signal recognition 68.2 55 0.0012 25.5 8.8 77 21-98 110-190 (451)
277 PF00291 PALP: Pyridoxal-phosp 68.0 42 0.0009 24.0 8.2 66 20-85 36-101 (306)
278 cd01522 RHOD_1 Member of the R 67.9 17 0.00037 22.2 4.6 38 37-74 62-100 (117)
279 PF02492 cobW: CobW/HypB/UreG, 66.9 34 0.00074 22.6 7.7 76 21-97 10-91 (178)
280 PRK13556 azoreductase; Provisi 66.5 4.7 0.0001 27.6 1.9 31 107-137 87-120 (208)
281 cd01525 RHOD_Kc Member of the 66.2 11 0.00025 22.2 3.5 36 39-74 65-101 (105)
282 PRK06553 lipid A biosynthesis 65.6 44 0.00095 24.4 6.9 56 31-86 124-179 (308)
283 PF00581 Rhodanese: Rhodanese- 65.5 21 0.00046 21.0 4.6 38 37-74 65-108 (113)
284 cd01448 TST_Repeat_1 Thiosulfa 65.1 23 0.00049 21.6 4.8 37 38-74 78-116 (122)
285 PRK04837 ATP-dependent RNA hel 64.6 61 0.0013 24.7 9.8 74 39-117 83-165 (423)
286 cd01532 4RHOD_Repeat_1 Member 63.7 19 0.00041 20.9 4.0 36 39-74 50-88 (92)
287 COG0135 TrpF Phosphoribosylant 63.7 47 0.001 23.1 9.0 57 25-84 40-96 (208)
288 COG4152 ABC-type uncharacteriz 63.7 30 0.00065 25.1 5.5 82 24-115 165-248 (300)
289 PF04007 DUF354: Protein of un 63.5 60 0.0013 24.3 7.6 47 21-70 9-55 (335)
290 cd01444 GlpE_ST GlpE sulfurtra 62.5 16 0.00034 21.1 3.5 37 37-73 54-91 (96)
291 PF13905 Thioredoxin_8: Thiore 62.1 28 0.00061 20.0 7.2 70 27-98 22-91 (95)
292 TIGR01136 cysKM cysteine synth 61.7 59 0.0013 23.5 7.9 65 21-85 35-103 (299)
293 PRK12898 secA preprotein trans 61.7 85 0.0019 25.9 8.3 59 21-80 126-189 (656)
294 PRK10717 cysteine synthase A; 61.5 63 0.0014 23.8 8.1 65 21-85 41-109 (330)
295 KOG0331|consensus 61.2 84 0.0018 25.1 9.2 89 22-115 139-245 (519)
296 PF13607 Succ_CoA_lig: Succiny 60.9 42 0.0009 21.6 6.9 62 41-102 3-66 (138)
297 PRK09860 putative alcohol dehy 60.6 72 0.0016 24.2 8.2 64 22-88 16-87 (383)
298 PRK05583 ribosomal protein L7A 60.4 36 0.00079 20.7 5.5 68 53-120 23-90 (104)
299 cd05212 NAD_bind_m-THF_DH_Cycl 60.2 43 0.00094 21.6 6.5 51 24-74 11-63 (140)
300 PRK11192 ATP-dependent RNA hel 60.0 75 0.0016 24.2 10.2 73 40-117 74-155 (434)
301 TIGR01139 cysK cysteine syntha 59.8 64 0.0014 23.3 7.9 65 21-85 34-102 (298)
302 PLN02160 thiosulfate sulfurtra 59.8 30 0.00065 22.0 4.7 38 37-74 79-117 (136)
303 PRK08943 lipid A biosynthesis 59.7 67 0.0014 23.5 7.5 57 31-87 122-178 (314)
304 PRK10590 ATP-dependent RNA hel 59.6 80 0.0017 24.4 10.5 91 21-116 48-156 (456)
305 cd01562 Thr-dehyd Threonine de 59.5 62 0.0013 23.3 6.8 66 20-85 44-110 (304)
306 PRK03692 putative UDP-N-acetyl 59.4 61 0.0013 23.0 10.1 73 26-99 92-166 (243)
307 PF12683 DUF3798: Protein of u 59.3 66 0.0014 23.4 6.9 99 25-131 47-152 (275)
308 PRK08329 threonine synthase; V 58.8 74 0.0016 23.7 8.2 65 21-85 85-149 (347)
309 PF00702 Hydrolase: haloacid d 58.5 52 0.0011 21.9 6.6 60 28-90 132-196 (215)
310 PRK05320 rhodanese superfamily 58.3 37 0.0008 24.3 5.3 37 38-74 174-211 (257)
311 TIGR01137 cysta_beta cystathio 58.0 84 0.0018 24.2 8.1 66 20-85 38-107 (454)
312 KOG0951|consensus 58.0 1E+02 0.0023 27.8 8.4 102 32-137 1352-1486(1674)
313 PRK11784 tRNA 2-selenouridine 57.3 80 0.0017 23.7 7.2 48 38-86 87-135 (345)
314 PF13086 AAA_11: AAA domain; P 57.0 35 0.00076 22.9 5.0 40 22-61 28-75 (236)
315 COG0552 FtsY Signal recognitio 57.0 82 0.0018 23.7 9.3 77 21-98 149-229 (340)
316 COG2961 ComJ Protein involved 57.0 72 0.0016 23.1 8.3 88 39-129 155-255 (279)
317 KOG1132|consensus 56.8 1.3E+02 0.0028 25.9 10.7 81 39-120 561-656 (945)
318 cd01445 TST_Repeats Thiosulfat 56.8 47 0.001 21.1 5.2 49 26-74 81-134 (138)
319 PRK14873 primosome assembly pr 56.3 30 0.00065 28.4 5.0 10 126-135 517-526 (665)
320 PLN00011 cysteine synthase 56.3 79 0.0017 23.3 8.1 66 20-85 44-114 (323)
321 KOG3432|consensus 56.2 37 0.0008 21.1 4.2 40 63-102 35-74 (121)
322 PRK13555 azoreductase; Provisi 56.0 9.6 0.00021 26.3 2.0 31 107-137 87-120 (208)
323 PRK06608 threonine dehydratase 55.9 83 0.0018 23.4 7.8 65 21-85 51-117 (338)
324 PRK09190 hypothetical protein; 55.7 56 0.0012 22.9 5.7 79 53-132 117-201 (220)
325 COG0607 PspE Rhodanese-related 55.4 13 0.00027 22.1 2.3 37 37-73 59-96 (110)
326 KOG1805|consensus 55.3 1.1E+02 0.0023 26.7 7.9 48 22-69 696-743 (1100)
327 PF00270 DEAD: DEAD/DEAH box h 55.2 52 0.0011 20.9 9.3 91 20-115 23-125 (169)
328 PRK07476 eutB threonine dehydr 55.2 77 0.0017 23.3 6.7 66 20-85 46-112 (322)
329 PRK13767 ATP-dependent helicas 55.1 1.3E+02 0.0029 25.6 8.8 92 20-116 56-179 (876)
330 PLN02363 phosphoribosylanthran 55.1 68 0.0015 23.0 6.2 51 26-78 86-137 (256)
331 TIGR02208 lipid_A_msbB lipid A 55.1 80 0.0017 23.0 7.7 57 32-88 114-170 (305)
332 PF02602 HEM4: Uroporphyrinoge 54.9 17 0.00037 24.9 3.1 74 24-100 103-179 (231)
333 PHA02558 uvsW UvsW helicase; P 54.1 1.1E+02 0.0023 24.2 8.7 43 20-62 138-181 (501)
334 KOG0351|consensus 54.1 54 0.0012 28.2 6.2 59 42-100 307-366 (941)
335 PF00265 TK: Thymidine kinase; 53.9 28 0.00061 23.3 3.9 32 19-50 9-40 (176)
336 COG2519 GCD14 tRNA(1-methylade 53.8 46 0.001 23.9 5.1 40 25-65 175-214 (256)
337 PTZ00110 helicase; Provisional 53.8 1.1E+02 0.0025 24.4 9.7 73 39-116 203-284 (545)
338 COG1182 AcpD Acyl carrier prot 53.5 12 0.00025 25.9 2.0 30 109-138 87-119 (202)
339 TIGR03865 PQQ_CXXCW PQQ-depend 53.4 58 0.0013 21.4 5.3 38 37-74 114-153 (162)
340 COG1817 Uncharacterized protei 52.6 97 0.0021 23.2 7.7 74 20-96 8-90 (346)
341 PLN02591 tryptophan synthase 52.4 84 0.0018 22.4 7.8 55 32-86 99-154 (250)
342 PF12646 DUF3783: Domain of un 52.3 11 0.00025 20.2 1.5 24 41-64 2-26 (58)
343 cd08172 GlyDH-like1 Glycerol d 51.9 97 0.0021 23.0 9.1 23 63-85 50-72 (347)
344 COG1201 Lhr Lhr-like helicases 51.4 84 0.0018 26.6 6.8 90 21-115 47-155 (814)
345 PRK00254 ski2-like helicase; P 51.2 1.4E+02 0.0031 24.7 8.3 58 19-76 47-108 (720)
346 TIGR00963 secA preprotein tran 51.1 1.5E+02 0.0032 25.0 9.4 45 38-82 96-144 (745)
347 PRK11493 sseA 3-mercaptopyruva 51.0 57 0.0012 23.4 5.4 37 38-74 230-267 (281)
348 KOG0385|consensus 50.9 1.6E+02 0.0034 25.2 8.1 77 23-102 198-279 (971)
349 PRK01297 ATP-dependent RNA hel 50.6 1.2E+02 0.0025 23.6 10.0 92 20-115 133-243 (475)
350 PRK05928 hemD uroporphyrinogen 50.6 80 0.0017 21.6 6.2 43 23-66 109-151 (249)
351 TIGR02196 GlrX_YruB Glutaredox 50.3 38 0.00083 17.9 6.7 49 43-91 3-52 (74)
352 PRK06352 threonine synthase; V 50.3 1.1E+02 0.0023 23.0 8.0 66 20-85 55-121 (351)
353 PRK07920 lipid A biosynthesis 50.3 96 0.0021 22.5 7.4 42 32-73 100-141 (298)
354 PRK07409 threonine synthase; V 50.2 1E+02 0.0023 22.9 7.8 66 20-85 58-124 (353)
355 PRK06548 ribonuclease H; Provi 50.1 67 0.0015 21.3 5.2 39 24-62 46-84 (161)
356 PRK14045 1-aminocyclopropane-1 49.9 1E+02 0.0022 22.7 6.9 65 21-85 51-118 (329)
357 TIGR03191 benz_CoA_bzdO benzoy 49.9 98 0.0021 24.0 6.7 52 22-75 347-403 (430)
358 TIGR00644 recJ single-stranded 49.8 1.3E+02 0.0029 24.0 9.5 45 24-68 39-87 (539)
359 cd08187 BDH Butanol dehydrogen 49.7 1.1E+02 0.0024 23.1 9.6 71 15-88 7-85 (382)
360 PRK04296 thymidine kinase; Pro 49.5 44 0.00094 22.5 4.4 27 21-47 12-38 (190)
361 PF12622 NpwBP: mRNA biogenesi 49.4 9.9 0.00022 19.8 1.0 12 112-123 3-14 (48)
362 COG2241 CobL Precorrin-6B meth 49.3 28 0.00061 24.2 3.4 34 32-65 133-166 (210)
363 PF14417 MEDS: MEDS: MEthanoge 49.2 43 0.00093 22.5 4.3 41 23-63 31-71 (191)
364 cd02067 B12-binding B12 bindin 48.5 61 0.0013 19.7 6.7 13 54-66 18-30 (119)
365 PF13361 UvrD_C: UvrD-like hel 48.5 99 0.0021 22.1 6.9 51 27-78 62-115 (351)
366 TIGR02181 GRX_bact Glutaredoxi 48.4 47 0.001 18.4 6.5 37 47-83 7-43 (79)
367 PLN02723 3-mercaptopyruvate su 48.2 74 0.0016 23.4 5.7 48 27-74 256-305 (320)
368 KOG0389|consensus 48.1 1.8E+02 0.0038 24.9 8.7 76 23-102 430-511 (941)
369 TIGR00260 thrC threonine synth 48.1 1.1E+02 0.0023 22.4 7.4 66 20-85 51-117 (328)
370 KOG0329|consensus 47.9 79 0.0017 23.1 5.5 72 41-117 112-193 (387)
371 PF05221 AdoHcyase: S-adenosyl 47.4 83 0.0018 22.8 5.6 60 23-85 54-114 (268)
372 TIGR02634 xylF D-xylose ABC tr 47.3 1E+02 0.0022 22.0 6.7 62 25-88 13-78 (302)
373 PF04312 DUF460: Protein of un 47.2 37 0.00079 22.0 3.4 63 21-86 58-123 (138)
374 PRK09427 bifunctional indole-3 47.2 1.4E+02 0.003 23.5 8.3 41 39-81 307-347 (454)
375 CHL00200 trpA tryptophan synth 47.1 1.1E+02 0.0023 22.1 9.1 55 31-85 111-166 (263)
376 COG2607 Predicted ATPase (AAA+ 46.9 29 0.00063 25.0 3.2 38 24-61 123-166 (287)
377 KOG1803|consensus 46.8 29 0.00064 28.1 3.5 39 22-60 212-250 (649)
378 PF00448 SRP54: SRP54-type pro 46.5 92 0.002 21.2 8.2 76 22-98 12-91 (196)
379 PF03279 Lip_A_acyltrans: Bact 46.2 1.1E+02 0.0024 22.0 6.8 51 36-86 117-167 (295)
380 COG0634 Hpt Hypoxanthine-guani 45.8 33 0.00071 23.2 3.2 83 24-108 20-110 (178)
381 PRK09200 preprotein translocas 45.5 1.9E+02 0.0041 24.6 8.1 59 21-80 101-165 (790)
382 PF01591 6PF2K: 6-phosphofruct 45.1 78 0.0017 22.2 5.1 45 52-97 84-129 (222)
383 PF02684 LpxB: Lipid-A-disacch 45.0 61 0.0013 24.6 4.9 51 36-86 79-134 (373)
384 COG1990 pth2 Peptidyl-tRNA hyd 44.9 40 0.00086 21.3 3.3 40 30-69 46-86 (122)
385 PRK04322 peptidyl-tRNA hydrola 44.8 75 0.0016 19.7 5.9 40 31-70 38-78 (113)
386 cd00291 SirA_YedF_YeeD SirA, Y 44.8 51 0.0011 17.8 5.6 35 37-71 24-58 (69)
387 TIGR01101 V_ATP_synt_F vacuola 44.7 66 0.0014 20.1 4.3 37 66-102 36-72 (115)
388 COG0075 Serine-pyruvate aminot 44.5 1.4E+02 0.0031 22.8 8.1 61 22-83 63-127 (383)
389 PRK07445 O-succinylbenzoic aci 44.2 1.4E+02 0.0031 22.8 7.2 63 23-85 27-91 (452)
390 PRK13103 secA preprotein trans 44.2 1.8E+02 0.0039 25.1 7.7 48 36-83 120-171 (913)
391 PLN00206 DEAD-box ATP-dependen 43.8 1.6E+02 0.0035 23.3 9.9 74 38-116 195-277 (518)
392 cd08186 Fe-ADH8 Iron-containin 43.7 1.4E+02 0.0031 22.5 9.7 66 23-88 9-83 (383)
393 TIGR01425 SRP54_euk signal rec 43.4 1.6E+02 0.0034 23.0 9.7 78 21-99 110-191 (429)
394 cd01542 PBP1_TreR_like Ligand- 43.4 1E+02 0.0023 21.0 6.8 61 24-88 13-77 (259)
395 PRK12326 preprotein translocas 43.4 2E+02 0.0044 24.3 8.2 47 36-82 116-166 (764)
396 PF02399 Herpes_ori_bp: Origin 42.9 95 0.0021 26.3 5.9 46 19-64 57-103 (824)
397 TIGR01689 EcbF-BcbF capsule bi 42.9 86 0.0019 19.8 5.1 45 26-70 27-84 (126)
398 PF00532 Peripla_BP_1: Peripla 42.8 1.2E+02 0.0027 21.6 6.3 40 36-75 28-68 (279)
399 TIGR01275 ACC_deam_rel pyridox 42.5 1.3E+02 0.0028 21.8 6.9 65 21-85 37-104 (311)
400 PRK10867 signal recognition pa 42.3 1.6E+02 0.0035 22.9 9.2 76 22-98 111-191 (433)
401 cd08191 HHD 6-hydroxyhexanoate 42.2 1.5E+02 0.0032 22.4 8.8 61 24-87 10-77 (386)
402 PRK06721 threonine synthase; R 42.2 1.4E+02 0.0031 22.2 8.1 66 20-85 55-121 (352)
403 PRK00377 cbiT cobalt-precorrin 42.0 99 0.0022 20.7 5.3 7 79-85 152-158 (198)
404 PF12689 Acid_PPase: Acid Phos 41.8 1.1E+02 0.0023 20.5 6.5 65 19-87 104-168 (169)
405 COG3453 Uncharacterized protei 41.7 85 0.0018 20.0 4.3 58 52-111 47-107 (130)
406 cd07025 Peptidase_S66 LD-Carbo 41.4 1.3E+02 0.0029 21.6 6.2 6 94-99 94-99 (282)
407 PRK02362 ski2-like helicase; P 41.3 1.3E+02 0.0029 24.9 6.7 56 19-75 47-106 (737)
408 PRK14010 potassium-transportin 41.2 2.1E+02 0.0045 23.8 7.7 38 52-89 446-503 (673)
409 PRK12906 secA preprotein trans 41.1 1.9E+02 0.004 24.7 7.3 47 36-82 118-168 (796)
410 PRK01355 azoreductase; Reviewe 40.6 25 0.00054 23.9 2.1 30 107-136 75-107 (199)
411 cd06315 PBP1_ABC_sugar_binding 40.5 1.3E+02 0.0028 21.1 6.4 62 33-97 24-88 (280)
412 cd02066 GRX_family Glutaredoxi 40.4 57 0.0012 17.0 7.1 39 42-80 2-41 (72)
413 cd06280 PBP1_LacI_like_4 Ligan 40.2 1.2E+02 0.0026 20.8 6.8 51 24-74 13-66 (263)
414 PF01206 TusA: Sulfurtransfera 40.2 64 0.0014 17.6 5.3 33 37-69 25-57 (70)
415 COG0159 TrpA Tryptophan syntha 40.1 1.4E+02 0.0031 21.6 7.4 35 52-86 136-170 (265)
416 KOG1503|consensus 39.8 87 0.0019 22.5 4.6 48 27-74 154-201 (354)
417 COG2217 ZntA Cation transport 39.7 1.3E+02 0.0027 25.2 6.2 21 68-88 578-598 (713)
418 TIGR01127 ilvA_1Cterm threonin 39.7 1.6E+02 0.0035 22.1 7.5 66 20-85 27-93 (380)
419 PLN02790 transketolase 39.5 2E+02 0.0043 23.7 7.3 55 52-107 189-245 (654)
420 PF10879 DUF2674: Protein of u 39.4 63 0.0014 17.3 3.1 30 39-69 5-34 (67)
421 COG3260 Ni,Fe-hydrogenase III 39.4 1.1E+02 0.0023 19.9 4.8 33 65-97 51-83 (148)
422 TIGR00283 arch_pth2 peptidyl-t 39.3 95 0.0021 19.3 5.8 38 32-69 41-79 (115)
423 PRK01415 hypothetical protein; 39.2 59 0.0013 23.2 3.8 38 37-74 169-207 (247)
424 KOG4175|consensus 39.2 1.3E+02 0.0029 21.0 8.8 39 49-87 134-172 (268)
425 TIGR00537 hemK_rel_arch HemK-r 39.1 1.1E+02 0.0024 20.0 5.2 43 29-71 123-165 (179)
426 TIGR00262 trpA tryptophan synt 39.0 1.4E+02 0.0031 21.3 9.1 52 33-84 109-161 (256)
427 PF02310 B12-binding: B12 bind 39.0 88 0.0019 18.8 5.9 59 37-96 26-87 (121)
428 PRK08197 threonine synthase; V 38.8 1.7E+02 0.0038 22.2 8.1 66 20-85 107-172 (394)
429 PRK05569 flavodoxin; Provision 38.3 1E+02 0.0022 19.3 7.0 58 24-81 68-132 (141)
430 PRK00162 glpE thiosulfate sulf 38.2 87 0.0019 18.5 4.8 38 37-74 56-94 (108)
431 PRK00142 putative rhodanese-re 38.1 60 0.0013 24.0 3.9 37 38-74 170-207 (314)
432 PRK08576 hypothetical protein; 38.0 1.4E+02 0.0031 23.3 6.0 53 44-96 4-60 (438)
433 PRK05638 threonine synthase; V 37.9 1.9E+02 0.0041 22.4 7.8 66 20-85 92-157 (442)
434 PF13167 GTP-bdg_N: GTP-bindin 37.9 92 0.002 18.7 4.6 36 50-85 44-79 (95)
435 cd06449 ACCD Aminocyclopropane 37.7 1.6E+02 0.0034 21.4 7.3 65 21-85 33-107 (307)
436 COG1618 Predicted nucleotide k 37.4 62 0.0013 21.8 3.5 39 49-91 117-155 (179)
437 COG0788 PurU Formyltetrahydrof 37.3 1.6E+02 0.0036 21.5 7.4 73 61-133 136-216 (287)
438 PRK07591 threonine synthase; V 37.2 1.9E+02 0.0042 22.2 8.0 65 21-85 118-182 (421)
439 TIGR01459 HAD-SF-IIA-hyp4 HAD- 37.2 64 0.0014 22.5 3.8 42 25-66 26-67 (242)
440 PRK14974 cell division protein 37.1 1.8E+02 0.0039 21.8 9.4 77 22-99 151-231 (336)
441 TIGR01274 ACC_deam 1-aminocycl 37.0 1.7E+02 0.0037 21.6 7.2 65 21-85 47-121 (337)
442 COG1412 Uncharacterized protei 36.7 1.2E+02 0.0025 19.6 4.9 17 55-71 109-125 (136)
443 KOG3282|consensus 36.7 1.4E+02 0.003 20.4 5.9 41 31-71 115-156 (190)
444 PLN02565 cysteine synthase 36.6 1.7E+02 0.0038 21.6 8.2 66 20-85 42-112 (322)
445 PRK05370 argininosuccinate syn 36.4 1.8E+02 0.0039 22.9 6.2 65 32-97 5-72 (447)
446 TIGR02189 GlrX-like_plant Glut 35.8 97 0.0021 18.4 6.4 36 39-74 7-43 (99)
447 PF04378 RsmJ: Ribosomal RNA s 35.7 1.6E+02 0.0036 21.0 6.6 87 38-127 123-222 (245)
448 PRK13104 secA preprotein trans 35.7 2.9E+02 0.0064 23.9 9.1 59 22-81 106-169 (896)
449 PRK08905 lipid A biosynthesis 35.6 1.7E+02 0.0037 21.1 7.1 57 31-88 92-148 (289)
450 PTZ00237 acetyl-CoA synthetase 35.5 2.4E+02 0.0052 22.8 8.5 62 24-85 101-163 (647)
451 COG2984 ABC-type uncharacteriz 35.3 1.9E+02 0.0041 21.6 8.5 53 19-71 139-196 (322)
452 KOG0340|consensus 35.3 2.1E+02 0.0045 22.1 7.1 74 22-100 55-135 (442)
453 cd02931 ER_like_FMN Enoate red 35.2 1.9E+02 0.0041 22.0 6.3 51 23-73 199-275 (382)
454 cd01446 DSP_MapKP N-terminal r 35.1 1.1E+02 0.0024 18.9 4.6 36 38-73 74-121 (132)
455 PLN02654 acetate-CoA ligase 34.9 2.5E+02 0.0054 22.9 9.0 69 25-97 130-199 (666)
456 PF03198 Glyco_hydro_72: Gluca 34.9 1.5E+02 0.0033 22.1 5.4 65 52-126 55-121 (314)
457 cd02407 PTH2_family Peptidyl-t 34.8 1.1E+02 0.0025 18.9 5.8 38 33-70 42-80 (115)
458 PRK08734 lipid A biosynthesis 34.7 1.8E+02 0.0039 21.2 7.1 57 31-88 104-160 (305)
459 TIGR02991 ectoine_eutB ectoine 34.6 1.9E+02 0.004 21.3 7.7 66 20-85 46-112 (317)
460 COG1922 WecG Teichoic acid bio 34.5 1.8E+02 0.0038 21.0 9.5 72 25-97 94-168 (253)
461 PLN02556 cysteine synthase/L-3 34.4 2E+02 0.0044 21.7 8.1 65 21-85 87-156 (368)
462 PRK08419 lipid A biosynthesis 34.3 1.8E+02 0.0039 21.0 7.4 41 32-72 105-145 (298)
463 PRK08762 molybdopterin biosynt 34.2 1.1E+02 0.0025 23.0 4.9 36 37-72 55-91 (376)
464 COG0149 TpiA Triosephosphate i 34.2 27 0.00059 25.0 1.5 80 41-121 59-170 (251)
465 PRK13111 trpA tryptophan synth 34.0 1.8E+02 0.0038 20.9 7.8 32 54-85 133-164 (258)
466 PRK08706 lipid A biosynthesis 34.0 1.8E+02 0.0039 20.9 6.9 57 31-88 97-153 (289)
467 PRK08811 uroporphyrinogen-III 34.0 90 0.002 22.3 4.2 63 38-101 137-201 (266)
468 PF12088 DUF3565: Protein of u 34.0 30 0.00065 18.9 1.3 22 116-137 25-47 (61)
469 PRK10517 magnesium-transportin 34.0 3.1E+02 0.0067 23.7 9.8 19 71-89 619-637 (902)
470 COG0021 TktA Transketolase [Ca 33.7 1.9E+02 0.0041 23.9 6.1 65 41-107 179-255 (663)
471 PF04723 GRDA: Glycine reducta 33.7 1.4E+02 0.003 19.5 5.9 79 38-120 4-95 (150)
472 PF00782 DSPc: Dual specificit 33.7 85 0.0018 19.3 3.7 38 22-59 56-95 (133)
473 COG1587 HemD Uroporphyrinogen- 33.5 1.7E+02 0.0037 20.5 7.8 77 23-100 107-186 (248)
474 COG1658 Small primase-like pro 33.3 50 0.0011 21.0 2.5 35 26-61 43-77 (127)
475 PTZ00293 thymidine kinase; Pro 33.3 62 0.0013 22.5 3.1 32 19-50 12-43 (211)
476 PRK10653 D-ribose transporter 33.3 1.8E+02 0.0038 20.6 6.3 8 38-45 55-62 (295)
477 PHA03371 circ protein; Provisi 32.7 28 0.0006 24.5 1.3 37 100-136 29-79 (240)
478 KOG0921|consensus 32.7 47 0.001 28.7 2.8 94 40-135 644-762 (1282)
479 TIGR01511 ATPase-IB1_Cu copper 32.5 2.6E+02 0.0057 22.4 8.4 59 27-90 409-467 (562)
480 PLN02819 lysine-ketoglutarate 32.5 3.5E+02 0.0077 23.9 8.6 90 36-129 669-763 (1042)
481 TIGR03190 benz_CoA_bzdN benzoy 32.2 1.4E+02 0.0031 22.6 5.2 50 24-75 301-355 (377)
482 PF11823 DUF3343: Protein of u 32.1 96 0.0021 17.2 4.5 28 42-69 4-31 (73)
483 TIGR01663 PNK-3'Pase polynucle 32.0 1.4E+02 0.003 23.9 5.2 47 27-73 201-257 (526)
484 cd03029 GRX_hybridPRX5 Glutare 31.7 92 0.002 16.9 6.8 35 40-74 1-36 (72)
485 PRK11773 uvrD DNA-dependent he 31.3 2.4E+02 0.0053 23.4 6.7 46 26-71 331-379 (721)
486 PF00697 PRAI: N-(5'phosphorib 31.3 1.2E+02 0.0026 20.6 4.3 35 41-77 51-85 (197)
487 PF02525 Flavodoxin_2: Flavodo 31.2 22 0.00047 23.9 0.6 32 107-138 76-110 (199)
488 cd08176 LPO Lactadehyde:propan 31.2 2.3E+02 0.005 21.3 9.4 72 15-88 6-84 (377)
489 cd08170 GlyDH Glycerol dehydro 31.1 2.2E+02 0.0048 21.1 10.2 62 23-87 9-75 (351)
490 cd01452 VWA_26S_proteasome_sub 31.1 1.7E+02 0.0037 19.9 6.3 46 40-86 108-158 (187)
491 PF00501 AMP-binding: AMP-bind 31.1 2.2E+02 0.0048 21.1 8.6 62 24-85 30-92 (417)
492 TIGR03820 lys_2_3_AblA lysine- 31.1 96 0.0021 24.0 4.1 20 54-73 207-226 (417)
493 cd06289 PBP1_MalI_like Ligand- 31.0 1.8E+02 0.0038 19.9 6.5 64 25-91 14-81 (268)
494 PRK05597 molybdopterin biosynt 30.9 91 0.002 23.4 3.9 37 38-74 313-350 (355)
495 TIGR01497 kdpB K+-transporting 30.9 3.2E+02 0.0068 22.8 8.5 64 27-90 413-509 (675)
496 cd01425 RPS2 Ribosomal protein 30.8 1.7E+02 0.0038 19.8 6.4 44 23-66 40-83 (193)
497 cd06273 PBP1_GntR_like_1 This 30.7 1.8E+02 0.0039 19.9 6.6 63 25-91 14-80 (268)
498 COG0329 DapA Dihydrodipicolina 30.6 1.8E+02 0.0038 21.3 5.3 13 74-86 55-67 (299)
499 cd06270 PBP1_GalS_like Ligand 30.6 1.8E+02 0.0039 20.0 6.7 47 25-72 14-64 (268)
500 KOG0330|consensus 30.6 2.6E+02 0.0057 21.8 9.1 89 22-115 109-210 (476)
No 1
>PLN03142 Probable chromatin-remodeling complex ATPase chain; Provisional
Probab=99.97 E-value=2.2e-31 Score=213.24 Aligned_cols=122 Identities=52% Similarity=0.821 Sum_probs=114.7
Q ss_pred cccccCchHHHHHHHHHHhhhCCCeEEEEeccHHHHHHHHHHHhhcCCeEEEEeCCCChHHHHHHHHHHhcCC-CceEEE
Q psy2046 17 DLVVESGKLKKLDEILPDLKKNGHRVLIFSQFIFVLDILGHYMDIRGWRHLRLDGATQVSSRQELIDEYNRDQ-DLFAFL 95 (138)
Q Consensus 17 ~~~~~s~K~~~l~~ll~~~~~~~~k~iif~~~~~~~~~l~~~l~~~g~~~~~i~g~~~~~~R~~~~~~F~~~~-~~~vll 95 (138)
.+...|+|+..|.++|..+...+.|+||||++..+++.|+++|...|+++..++|+++..+|..+++.|++++ ...++|
T Consensus 465 ~lie~SgKl~lLdkLL~~Lk~~g~KVLIFSQft~~LdiLed~L~~~g~~y~rIdGsts~~eRq~~Id~Fn~~~s~~~VfL 544 (1033)
T PLN03142 465 HLVENSGKMVLLDKLLPKLKERDSRVLIFSQMTRLLDILEDYLMYRGYQYCRIDGNTGGEDRDASIDAFNKPGSEKFVFL 544 (1033)
T ss_pred HHhhhhhHHHHHHHHHHHHHhcCCeEEeehhHHHHHHHHHHHHHHcCCcEEEECCCCCHHHHHHHHHHhccccCCceEEE
Confidence 4567899999999999999889999999999999999999999999999999999999999999999998653 345789
Q ss_pred EeccccccccCcCccCEEEEeCCCCCccchhHHHHHHhhcCCC
Q psy2046 96 LSTKAGGLGINLTAADTVIIHDVDFNPYNDKQAEDRCHRVGQT 138 (138)
Q Consensus 96 ~~~~~~~~Gl~l~~~~~vi~~~~~~~~~~~~Q~~gR~~R~GQt 138 (138)
+||++||.||||+.|++||+||++|||..+.||+||+||+||+
T Consensus 545 LSTrAGGlGINLt~Ad~VIiyD~dWNP~~d~QAidRaHRIGQk 587 (1033)
T PLN03142 545 LSTRAGGLGINLATADIVILYDSDWNPQVDLQAQDRAHRIGQK 587 (1033)
T ss_pred EeccccccCCchhhCCEEEEeCCCCChHHHHHHHHHhhhcCCC
Confidence 9999999999999999999999999999999999999999996
No 2
>KOG0387|consensus
Probab=99.97 E-value=5.1e-31 Score=202.03 Aligned_cols=122 Identities=48% Similarity=0.808 Sum_probs=118.3
Q ss_pred cccccCchHHHHHHHHHHhhhCCCeEEEEeccHHHHHHHHHHHh-hcCCeEEEEeCCCChHHHHHHHHHHhcCCCceEEE
Q psy2046 17 DLVVESGKLKKLDEILPDLKKNGHRVLIFSQFIFVLDILGHYMD-IRGWRHLRLDGATQVSSRQELIDEYNRDQDLFAFL 95 (138)
Q Consensus 17 ~~~~~s~K~~~l~~ll~~~~~~~~k~iif~~~~~~~~~l~~~l~-~~g~~~~~i~g~~~~~~R~~~~~~F~~~~~~~vll 95 (138)
...+.|+|+..+..+++.+...|.++++|++...++++|+..|. ..|++|+.++|.++...|..++++|++++...|+|
T Consensus 524 g~~k~sGKm~vl~~ll~~W~kqg~rvllFsqs~~mLdilE~fL~~~~~ysylRmDGtT~~~~R~~lVd~Fne~~s~~VFL 603 (923)
T KOG0387|consen 524 GDPKRSGKMKVLAKLLKDWKKQGDRVLLFSQSRQMLDILESFLRRAKGYSYLRMDGTTPAALRQKLVDRFNEDESIFVFL 603 (923)
T ss_pred CChhhcchHHHHHHHHHHHhhCCCEEEEehhHHHHHHHHHHHHHhcCCceEEEecCCCccchhhHHHHhhcCCCceEEEE
Confidence 45778999999999999999999999999999999999999999 68999999999999999999999999999999999
Q ss_pred EeccccccccCcCccCEEEEeCCCCCccchhHHHHHHhhcCCC
Q psy2046 96 LSTKAGGLGINLTAADTVIIHDVDFNPYNDKQAEDRCHRVGQT 138 (138)
Q Consensus 96 ~~~~~~~~Gl~l~~~~~vi~~~~~~~~~~~~Q~~gR~~R~GQt 138 (138)
++|++||.|+||++||.||+|||.|||....||..|+||+|||
T Consensus 604 LTTrvGGLGlNLTgAnRVIIfDPdWNPStD~QAreRawRiGQk 646 (923)
T KOG0387|consen 604 LTTRVGGLGLNLTGANRVIIFDPDWNPSTDNQARERAWRIGQK 646 (923)
T ss_pred EEecccccccccccCceEEEECCCCCCccchHHHHHHHhhcCc
Confidence 9999999999999999999999999999999999999999997
No 3
>KOG0389|consensus
Probab=99.97 E-value=7.7e-31 Score=200.96 Aligned_cols=132 Identities=66% Similarity=1.070 Sum_probs=127.8
Q ss_pred cccCCCCCCCcccccCchHHHHHHHHHHhhhCCCeEEEEeccHHHHHHHHHHHhhcCCeEEEEeCCCChHHHHHHHHHHh
Q psy2046 7 LDCAKYKVPDDLVVESGKLKKLDEILPDLKKNGHRVLIFSQFIFVLDILGHYMDIRGWRHLRLDGATQVSSRQELIDEYN 86 (138)
Q Consensus 7 ~~~~~~~~~~~~~~~s~K~~~l~~ll~~~~~~~~k~iif~~~~~~~~~l~~~l~~~g~~~~~i~g~~~~~~R~~~~~~F~ 86 (138)
-..+.+...++.++.|+|+..|..+|..+.++|+||+||++|..++|.|+..|...++.|..++|++....|+.+++.|+
T Consensus 745 ~~~~~f~L~d~~~mdSgK~r~L~~LLp~~k~~G~RVLiFSQFTqmLDILE~~L~~l~~~ylRLDGsTqV~~RQ~lId~Fn 824 (941)
T KOG0389|consen 745 RHLSKFQLKDDLWMDSGKCRKLKELLPKIKKKGDRVLIFSQFTQMLDILEVVLDTLGYKYLRLDGSTQVNDRQDLIDEFN 824 (941)
T ss_pred CCCcccccCCchhhhhhhHhHHHHHHHHHhhcCCEEEEeeHHHHHHHHHHHHHHhcCceEEeecCCccchHHHHHHHhhc
Confidence 34567888999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCceEEEEeccccccccCcCccCEEEEeCCCCCccchhHHHHHHhhcCCC
Q psy2046 87 RDQDLFAFLLSTKAGGLGINLTAADTVIIHDVDFNPYNDKQAEDRCHRVGQT 138 (138)
Q Consensus 87 ~~~~~~vll~~~~~~~~Gl~l~~~~~vi~~~~~~~~~~~~Q~~gR~~R~GQt 138 (138)
.++++.|+|+||++||.||||++||+||++|..+||-+..||.+|+||.|||
T Consensus 825 ~d~difVFLLSTKAGG~GINLt~An~VIihD~dFNP~dD~QAEDRcHRvGQt 876 (941)
T KOG0389|consen 825 TDKDIFVFLLSTKAGGFGINLTCANTVIIHDIDFNPYDDKQAEDRCHRVGQT 876 (941)
T ss_pred cCCceEEEEEeeccCcceecccccceEEEeecCCCCcccchhHHHHHhhCCc
Confidence 9999999999999999999999999999999999999999999999999997
No 4
>KOG0385|consensus
Probab=99.97 E-value=1e-30 Score=200.03 Aligned_cols=138 Identities=52% Similarity=0.825 Sum_probs=126.2
Q ss_pred CccccccccC----------CCCCCCcccccCchHHHHHHHHHHhhhCCCeEEEEeccHHHHHHHHHHHhhcCCeEEEEe
Q psy2046 1 MALKQTLDCA----------KYKVPDDLVVESGKLKKLDEILPDLKKNGHRVLIFSQFIFVLDILGHYMDIRGWRHLRLD 70 (138)
Q Consensus 1 ~~l~~~~~~~----------~~~~~~~~~~~s~K~~~l~~ll~~~~~~~~k~iif~~~~~~~~~l~~~l~~~g~~~~~i~ 70 (138)
|.|++-|+++ +|.....++..|+|+..|.++|..+.+.|.||+||++...++|.|++++--+++.|..++
T Consensus 439 mQLRKccnHPYLF~g~ePg~pyttdehLv~nSGKm~vLDkLL~~Lk~~GhRVLIFSQmt~mLDILeDyc~~R~y~ycRiD 518 (971)
T KOG0385|consen 439 MQLRKCCNHPYLFDGAEPGPPYTTDEHLVTNSGKMLVLDKLLPKLKEQGHRVLIFSQMTRMLDILEDYCMLRGYEYCRLD 518 (971)
T ss_pred HHHHHhcCCccccCCCCCCCCCCcchHHHhcCcceehHHHHHHHHHhCCCeEEEeHHHHHHHHHHHHHHHhcCceeEeec
Confidence 4566655554 455555788999999999999999999999999999999999999999999999999999
Q ss_pred CCCChHHHHHHHHHHhcCC-CceEEEEeccccccccCcCccCEEEEeCCCCCccchhHHHHHHhhcCCC
Q psy2046 71 GATQVSSRQELIDEYNRDQ-DLFAFLLSTKAGGLGINLTAADTVIIHDVDFNPYNDKQAEDRCHRVGQT 138 (138)
Q Consensus 71 g~~~~~~R~~~~~~F~~~~-~~~vll~~~~~~~~Gl~l~~~~~vi~~~~~~~~~~~~Q~~gR~~R~GQt 138 (138)
|+++.++|...++.|+.++ ...|+|+||.+||.|+||..|+.||+||.+|||....||..|+||+||+
T Consensus 519 GSt~~eeR~~aI~~fn~~~s~~FiFlLSTRAGGLGINL~aADtVIlyDSDWNPQ~DLQAmDRaHRIGQ~ 587 (971)
T KOG0385|consen 519 GSTSHEEREDAIEAFNAPPSEKFIFLLSTRAGGLGINLTAADTVILYDSDWNPQVDLQAMDRAHRIGQK 587 (971)
T ss_pred CCCCcHHHHHHHHhcCCCCcceEEEEEeccccccccccccccEEEEecCCCCchhhhHHHHHHHhhCCc
Confidence 9999999999999999654 5778999999999999999999999999999999999999999999996
No 5
>KOG0384|consensus
Probab=99.95 E-value=2.9e-28 Score=193.25 Aligned_cols=121 Identities=59% Similarity=0.935 Sum_probs=114.9
Q ss_pred ccccCchHHHHHHHHHHhhhCCCeEEEEeccHHHHHHHHHHHhhcCCeEEEEeCCCChHHHHHHHHHHhc-CCCceEEEE
Q psy2046 18 LVVESGKLKKLDEILPDLKKNGHRVLIFSQFIFVLDILGHYMDIRGWRHLRLDGATQVSSRQELIDEYNR-DQDLFAFLL 96 (138)
Q Consensus 18 ~~~~s~K~~~l~~ll~~~~~~~~k~iif~~~~~~~~~l~~~l~~~g~~~~~i~g~~~~~~R~~~~~~F~~-~~~~~vll~ 96 (138)
++.+|+|+-.|-+||-.+.+.|.||+||++-..++|.|+++|..++++|-.++|++.-+-|..+++.|+. ++...|+|+
T Consensus 678 lI~sSGKlVLLDKLL~rLk~~GHrVLIFSQMVRmLDIL~eYL~~r~ypfQRLDGsvrgelRq~AIDhFnap~SddFvFLL 757 (1373)
T KOG0384|consen 678 LIQSSGKLVLLDKLLPRLKEGGHRVLIFSQMVRMLDILAEYLSLRGYPFQRLDGSVRGELRQQAIDHFNAPDSDDFVFLL 757 (1373)
T ss_pred HHHhcCcEEeHHHHHHHHhcCCceEEEhHHHHHHHHHHHHHHHHcCCcceeccCCcchHHHHHHHHhccCCCCCceEEEE
Confidence 5678999999999999999999999999999999999999999999999999999999999999999994 455788999
Q ss_pred eccccccccCcCccCEEEEeCCCCCccchhHHHHHHhhcCCC
Q psy2046 97 STKAGGLGINLTAADTVIIHDVDFNPYNDKQAEDRCHRVGQT 138 (138)
Q Consensus 97 ~~~~~~~Gl~l~~~~~vi~~~~~~~~~~~~Q~~gR~~R~GQt 138 (138)
||.+||.||||..|++||+||..|||....||.+|+||+||+
T Consensus 758 STRAGGLGINLatADTVIIFDSDWNPQNDLQAqARaHRIGQk 799 (1373)
T KOG0384|consen 758 STRAGGLGINLATADTVIIFDSDWNPQNDLQAQARAHRIGQK 799 (1373)
T ss_pred ecccCcccccccccceEEEeCCCCCcchHHHHHHHHHhhccc
Confidence 999999999999999999999999999999999999999996
No 6
>PRK04914 ATP-dependent helicase HepA; Validated
Probab=99.95 E-value=3.6e-27 Score=188.40 Aligned_cols=118 Identities=20% Similarity=0.256 Sum_probs=105.3
Q ss_pred cccCchHHHHHHHHHHhhhCCCeEEEEeccHHHHHHHHHHH-hhcCCeEEEEeCCCChHHHHHHHHHHhcCCCceEEEEe
Q psy2046 19 VVESGKLKKLDEILPDLKKNGHRVLIFSQFIFVLDILGHYM-DIRGWRHLRLDGATQVSSRQELIDEYNRDQDLFAFLLS 97 (138)
Q Consensus 19 ~~~s~K~~~l~~ll~~~~~~~~k~iif~~~~~~~~~l~~~l-~~~g~~~~~i~g~~~~~~R~~~~~~F~~~~~~~vll~~ 97 (138)
....+|+..|.++++.. .++|+||||++..+++.|.+.| ...|+++..+||++++.+|.++++.|++++....+|++
T Consensus 475 ~~~d~Ki~~L~~~L~~~--~~~KvLVF~~~~~t~~~L~~~L~~~~Gi~~~~ihG~~s~~eR~~~~~~F~~~~~~~~VLIs 552 (956)
T PRK04914 475 WNFDPRVEWLIDFLKSH--RSEKVLVICAKAATALQLEQALREREGIRAAVFHEGMSIIERDRAAAYFADEEDGAQVLLC 552 (956)
T ss_pred cccCHHHHHHHHHHHhc--CCCeEEEEeCcHHHHHHHHHHHhhccCeeEEEEECCCCHHHHHHHHHHHhcCCCCccEEEe
Confidence 44567999999988753 3779999999999999999999 56799999999999999999999999976422236778
Q ss_pred ccccccccCcCccCEEEEeCCCCCccchhHHHHHHhhcCCC
Q psy2046 98 TKAGGLGINLTAADTVIIHDVDFNPYNDKQAEDRCHRVGQT 138 (138)
Q Consensus 98 ~~~~~~Gl~l~~~~~vi~~~~~~~~~~~~Q~~gR~~R~GQt 138 (138)
|+++++|+|++.+++||+||+||||..|+||+||+||+||+
T Consensus 553 TdvgseGlNlq~a~~VInfDlP~nP~~~eQRIGR~~RiGQ~ 593 (956)
T PRK04914 553 SEIGSEGRNFQFASHLVLFDLPFNPDLLEQRIGRLDRIGQK 593 (956)
T ss_pred chhhccCCCcccccEEEEecCCCCHHHHHHHhcccccCCCC
Confidence 89999999999999999999999999999999999999996
No 7
>KOG0331|consensus
Probab=99.94 E-value=7.3e-27 Score=175.02 Aligned_cols=131 Identities=21% Similarity=0.336 Sum_probs=119.0
Q ss_pred ccccCCCCCCCcccccCchHHHHHHHHHHhh-hCCCeEEEEeccHHHHHHHHHHHhhcCCeEEEEeCCCChHHHHHHHHH
Q psy2046 6 TLDCAKYKVPDDLVVESGKLKKLDEILPDLK-KNGHRVLIFSQFIFVLDILGHYMDIRGWRHLRLDGATQVSSRQELIDE 84 (138)
Q Consensus 6 ~~~~~~~~~~~~~~~~s~K~~~l~~ll~~~~-~~~~k~iif~~~~~~~~~l~~~l~~~g~~~~~i~g~~~~~~R~~~~~~ 84 (138)
...+..+.+..+.+...+|...+.++|.++. ..+.|+||||+++..++.|+..|...++++..|||+.++.+|+.+++.
T Consensus 307 ~~a~~~i~qive~~~~~~K~~~l~~lL~~~~~~~~~KvIIFc~tkr~~~~l~~~l~~~~~~a~~iHGd~sQ~eR~~~L~~ 386 (519)
T KOG0331|consen 307 LKANHNIRQIVEVCDETAKLRKLGKLLEDISSDSEGKVIIFCETKRTCDELARNLRRKGWPAVAIHGDKSQSERDWVLKG 386 (519)
T ss_pred hhhhcchhhhhhhcCHHHHHHHHHHHHHHHhccCCCcEEEEecchhhHHHHHHHHHhcCcceeeecccccHHHHHHHHHh
Confidence 3445556666677778899999999999886 345699999999999999999999999999999999999999999999
Q ss_pred HhcCCCceEEEEeccccccccCcCccCEEEEeCCCCCccchhHHHHHHhhcCCC
Q psy2046 85 YNRDQDLFAFLLSTKAGGLGINLTAADTVIIHDVDFNPYNDKQAEDRCHRVGQT 138 (138)
Q Consensus 85 F~~~~~~~vll~~~~~~~~Gl~l~~~~~vi~~~~~~~~~~~~Q~~gR~~R~GQt 138 (138)
|++|+.. +|++|+++++|||++++++||+||+|-|..+|+||+||++|.|++
T Consensus 387 FreG~~~--vLVATdVAaRGLDi~dV~lVInydfP~~vEdYVHRiGRTGRa~~~ 438 (519)
T KOG0331|consen 387 FREGKSP--VLVATDVAARGLDVPDVDLVINYDFPNNVEDYVHRIGRTGRAGKK 438 (519)
T ss_pred cccCCcc--eEEEcccccccCCCccccEEEeCCCCCCHHHHHhhcCccccCCCC
Confidence 9999876 899999999999999999999999999999999999999998875
No 8
>KOG0391|consensus
Probab=99.94 E-value=3.1e-26 Score=181.30 Aligned_cols=120 Identities=51% Similarity=0.899 Sum_probs=116.5
Q ss_pred cccCchHHHHHHHHHHhhhCCCeEEEEeccHHHHHHHHHHHhhcCCeEEEEeCCCChHHHHHHHHHHhcCCCceEEEEec
Q psy2046 19 VVESGKLKKLDEILPDLKKNGHRVLIFSQFIFVLDILGHYMDIRGWRHLRLDGATQVSSRQELIDEYNRDQDLFAFLLST 98 (138)
Q Consensus 19 ~~~s~K~~~l~~ll~~~~~~~~k~iif~~~~~~~~~l~~~l~~~g~~~~~i~g~~~~~~R~~~~~~F~~~~~~~vll~~~ 98 (138)
--+.+|+..|.=+|..++.+|.+++||++...++|.|+.+|.-+|+.|+.++|.++.++|+..+++|+.++.+.++|+||
T Consensus 1256 qyDcGKLQtLAiLLqQLk~eghRvLIfTQMtkmLDVLeqFLnyHgylY~RLDg~t~vEqRQaLmerFNaD~RIfcfILST 1335 (1958)
T KOG0391|consen 1256 QYDCGKLQTLAILLQQLKSEGHRVLIFTQMTKMLDVLEQFLNYHGYLYVRLDGNTSVEQRQALMERFNADRRIFCFILST 1335 (1958)
T ss_pred ecccchHHHHHHHHHHHHhcCceEEehhHHHHHHHHHHHHHhhcceEEEEecCCccHHHHHHHHHHhcCCCceEEEEEec
Confidence 34679999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccccCcCccCEEEEeCCCCCccchhHHHHHHhhcCCC
Q psy2046 99 KAGGLGINLTAADTVIIHDVDFNPYNDKQAEDRCHRVGQT 138 (138)
Q Consensus 99 ~~~~~Gl~l~~~~~vi~~~~~~~~~~~~Q~~gR~~R~GQt 138 (138)
.++|.|+||++|++|||||.+|||....|+-.|+||+|||
T Consensus 1336 rSggvGiNLtgADTVvFYDsDwNPtMDaQAQDrChRIGqt 1375 (1958)
T KOG0391|consen 1336 RSGGVGINLTGADTVVFYDSDWNPTMDAQAQDRCHRIGQT 1375 (1958)
T ss_pred cCCccccccccCceEEEecCCCCchhhhHHHHHHHhhcCc
Confidence 9999999999999999999999999999999999999997
No 9
>KOG0392|consensus
Probab=99.94 E-value=3.7e-26 Score=181.36 Aligned_cols=120 Identities=39% Similarity=0.655 Sum_probs=110.1
Q ss_pred cccCchHHHHHHHHHHhh-h-------------CCCeEEEEeccHHHHHHHHHHHhhc---CCeEEEEeCCCChHHHHHH
Q psy2046 19 VVESGKLKKLDEILPDLK-K-------------NGHRVLIFSQFIFVLDILGHYMDIR---GWRHLRLDGATQVSSRQEL 81 (138)
Q Consensus 19 ~~~s~K~~~l~~ll~~~~-~-------------~~~k~iif~~~~~~~~~l~~~l~~~---g~~~~~i~g~~~~~~R~~~ 81 (138)
...++|+.+|.++|.+.. . .+.|++|||+++.++|.+++.|.+. .+.|..++|+.++.+|.++
T Consensus 1306 i~hspKl~AL~qLL~eCGig~~~~~~~g~~s~vsqHRiLIFcQlK~mlDlVekDL~k~~mpsVtymRLDGSVpp~~R~ki 1385 (1549)
T KOG0392|consen 1306 IQHSPKLSALKQLLSECGIGNNSDSEVGTPSDVSQHRILIFCQLKSMLDLVEKDLFKKYMPSVTYMRLDGSVPPGDRQKI 1385 (1549)
T ss_pred hhhchhHHHHHHHHHHhCCCCCCcccccCcchhccceeEEeeeHHHHHHHHHHHHhhhhcCceeEEEecCCCCcHHHHHH
Confidence 578999999999998852 1 2369999999999999999998765 3457799999999999999
Q ss_pred HHHHhcCCCceEEEEeccccccccCcCccCEEEEeCCCCCccchhHHHHHHhhcCCC
Q psy2046 82 IDEYNRDQDLFAFLLSTKAGGLGINLTAADTVIIHDVDFNPYNDKQAEDRCHRVGQT 138 (138)
Q Consensus 82 ~~~F~~~~~~~vll~~~~~~~~Gl~l~~~~~vi~~~~~~~~~~~~Q~~gR~~R~GQt 138 (138)
+++|++++.+.|+|++|.+||.||||++|++||+++.+|||-...||++|+||+|||
T Consensus 1386 V~~FN~DptIDvLlLTThVGGLGLNLTGADTVVFvEHDWNPMrDLQAMDRAHRIGQK 1442 (1549)
T KOG0392|consen 1386 VERFNEDPTIDVLLLTTHVGGLGLNLTGADTVVFVEHDWNPMRDLQAMDRAHRIGQK 1442 (1549)
T ss_pred HHHhcCCCceeEEEEeeeccccccccCCCceEEEEecCCCchhhHHHHHHHHhhcCc
Confidence 999999999999999999999999999999999999999999999999999999997
No 10
>KOG0390|consensus
Probab=99.94 E-value=8.6e-26 Score=175.46 Aligned_cols=119 Identities=39% Similarity=0.621 Sum_probs=107.1
Q ss_pred ccCchHHHHHHHHHHhhhC-CCeEEEEeccHHHHHHHHHHHhhcCCeEEEEeCCCChHHHHHHHHHHhcCCCc-eEEEEe
Q psy2046 20 VESGKLKKLDEILPDLKKN-GHRVLIFSQFIFVLDILGHYMDIRGWRHLRLDGATQVSSRQELIDEYNRDQDL-FAFLLS 97 (138)
Q Consensus 20 ~~s~K~~~l~~ll~~~~~~-~~k~iif~~~~~~~~~l~~~l~~~g~~~~~i~g~~~~~~R~~~~~~F~~~~~~-~vll~~ 97 (138)
..++|+..|..++....+. ..++++.++++.+++.++..++.+|..++.++|.++..+|+.+++.|++.+.. .|+|+|
T Consensus 575 ~ks~kl~~L~~ll~~~~ek~~~~~v~Isny~~tldl~e~~~~~~g~~~~rLdG~~~~~qRq~~vd~FN~p~~~~~vfLlS 654 (776)
T KOG0390|consen 575 SKSGKLLVLVFLLEVIREKLLVKSVLISNYTQTLDLFEQLCRWRGYEVLRLDGKTSIKQRQKLVDTFNDPESPSFVFLLS 654 (776)
T ss_pred hhhhHHHHHHHHHHHHhhhcceEEEEeccHHHHHHHHHHHHhhcCceEEEEcCCCchHHHHHHHHhccCCCCCceEEEEe
Confidence 3467777777777443333 46888899999999999999999999999999999999999999999977666 899999
Q ss_pred ccccccccCcCccCEEEEeCCCCCccchhHHHHHHhhcCCC
Q psy2046 98 TKAGGLGINLTAADTVIIHDVDFNPYNDKQAEDRCHRVGQT 138 (138)
Q Consensus 98 ~~~~~~Gl~l~~~~~vi~~~~~~~~~~~~Q~~gR~~R~GQt 138 (138)
++++|+||||.+|+++|++|++|||+...||++|+||.||+
T Consensus 655 sKAgg~GinLiGAsRlil~D~dWNPa~d~QAmaR~~RdGQK 695 (776)
T KOG0390|consen 655 SKAGGEGLNLIGASRLILFDPDWNPAVDQQAMARAWRDGQK 695 (776)
T ss_pred cccccCceeecccceEEEeCCCCCchhHHHHHHHhccCCCc
Confidence 99999999999999999999999999999999999999996
No 11
>KOG0388|consensus
Probab=99.93 E-value=1.4e-25 Score=171.32 Aligned_cols=121 Identities=53% Similarity=0.912 Sum_probs=116.6
Q ss_pred cccccCchHHHHHHHHHHhhhCCCeEEEEeccHHHHHHHHHHHhhcCCeEEEEeCCCChHHHHHHHHHHhcCCCceEEEE
Q psy2046 17 DLVVESGKLKKLDEILPDLKKNGHRVLIFSQFIFVLDILGHYMDIRGWRHLRLDGATQVSSRQELIDEYNRDQDLFAFLL 96 (138)
Q Consensus 17 ~~~~~s~K~~~l~~ll~~~~~~~~k~iif~~~~~~~~~l~~~l~~~g~~~~~i~g~~~~~~R~~~~~~F~~~~~~~vll~ 96 (138)
.+..+|+|+..|.++|..+...|.++++|.+..++++.++++|.-.|++|..++|+....+|..++.+|+. +...|+|+
T Consensus 1022 ~FitdSgKL~~LDeLL~kLkaegHRvL~yfQMTkM~dl~EdYl~yr~Y~ylRLDGSsk~~dRrd~vrDwQ~-sdiFvFLL 1100 (1185)
T KOG0388|consen 1022 TFITDSGKLVVLDELLPKLKAEGHRVLMYFQMTKMIDLIEDYLVYRGYTYLRLDGSSKASDRRDVVRDWQA-SDIFVFLL 1100 (1185)
T ss_pred hhhccccceeeHHHHHHHhhcCCceEEehhHHHHHHHHHHHHHHhhccceEEecCcchhhHHHHHHhhccC-CceEEEEE
Confidence 45789999999999999999999999999999999999999999999999999999999999999999998 57789999
Q ss_pred eccccccccCcCccCEEEEeCCCCCccchhHHHHHHhhcCCC
Q psy2046 97 STKAGGLGINLTAADTVIIHDVDFNPYNDKQAEDRCHRVGQT 138 (138)
Q Consensus 97 ~~~~~~~Gl~l~~~~~vi~~~~~~~~~~~~Q~~gR~~R~GQt 138 (138)
||.+||.|+||+.|++||+||..|||....|+++|+||+|||
T Consensus 1101 STRAGGLGINLTAADTViFYdSDWNPT~D~QAMDRAHRLGQT 1142 (1185)
T KOG0388|consen 1101 STRAGGLGINLTAADTVIFYDSDWNPTADQQAMDRAHRLGQT 1142 (1185)
T ss_pred ecccCcccccccccceEEEecCCCCcchhhHHHHHHHhccCc
Confidence 999999999999999999999999999999999999999998
No 12
>KOG1002|consensus
Probab=99.93 E-value=1.2e-25 Score=166.37 Aligned_cols=122 Identities=35% Similarity=0.503 Sum_probs=114.5
Q ss_pred cccccCchHHHHHHHHHHhhhCC--CeEEEEeccHHHHHHHHHHHhhcCCeEEEEeCCCChHHHHHHHHHHhcCCCceEE
Q psy2046 17 DLVVESGKLKKLDEILPDLKKNG--HRVLIFSQFIFVLDILGHYMDIRGWRHLRLDGATQVSSRQELIDEYNRDQDLFAF 94 (138)
Q Consensus 17 ~~~~~s~K~~~l~~ll~~~~~~~--~k~iif~~~~~~~~~l~~~l~~~g~~~~~i~g~~~~~~R~~~~~~F~~~~~~~vl 94 (138)
+.+..|.|+.+|.+-|.-+.+++ -|.|||+++..++|.++=.|.+.|+.++.+.|+|++..|...++.|+++..++|+
T Consensus 614 ~~~qsSTKIEAL~EEl~~l~~rd~t~KsIVFSQFTSmLDLi~~rL~kaGfscVkL~GsMs~~ardatik~F~nd~~c~vf 693 (791)
T KOG1002|consen 614 DDWQSSTKIEALVEELYFLRERDRTAKSIVFSQFTSMLDLIEWRLGKAGFSCVKLVGSMSPAARDATIKYFKNDIDCRVF 693 (791)
T ss_pred hhhcchhHHHHHHHHHHHHHHcccchhhhhHHHHHHHHHHHHHHhhccCceEEEeccCCChHHHHHHHHHhccCCCeEEE
Confidence 45678899999998887766654 4899999999999999999999999999999999999999999999999999999
Q ss_pred EEeccccccccCcCccCEEEEeCCCCCccchhHHHHHHhhcCCC
Q psy2046 95 LLSTKAGGLGINLTAADTVIIHDVDFNPYNDKQAEDRCHRVGQT 138 (138)
Q Consensus 95 l~~~~~~~~Gl~l~~~~~vi~~~~~~~~~~~~Q~~gR~~R~GQt 138 (138)
|+|.++||..|||+.|++|+.+||||||+.+.|+.+|+||+||.
T Consensus 694 LvSLkAGGVALNLteASqVFmmDPWWNpaVe~Qa~DRiHRIGQ~ 737 (791)
T KOG1002|consen 694 LVSLKAGGVALNLTEASQVFMMDPWWNPAVEWQAQDRIHRIGQY 737 (791)
T ss_pred EEEeccCceEeeechhceeEeecccccHHHHhhhhhhHHhhcCc
Confidence 99999999999999999999999999999999999999999993
No 13
>KOG0333|consensus
Probab=99.92 E-value=1.3e-24 Score=161.36 Aligned_cols=122 Identities=23% Similarity=0.313 Sum_probs=111.4
Q ss_pred CCCCcccccCchHHHHHHHHHHhhhCCCeEEEEeccHHHHHHHHHHHhhcCCeEEEEeCCCChHHHHHHHHHHhcCCCce
Q psy2046 13 KVPDDLVVESGKLKKLDEILPDLKKNGHRVLIFSQFIFVLDILGHYMDIRGWRHLRLDGATQVSSRQELIDEYNRDQDLF 92 (138)
Q Consensus 13 ~~~~~~~~~s~K~~~l~~ll~~~~~~~~k~iif~~~~~~~~~l~~~l~~~g~~~~~i~g~~~~~~R~~~~~~F~~~~~~~ 92 (138)
++....+..+.|..+|.++|... ..+.+|||+++.+.+++|++.|.+.|+.+..+||+.++++|+.+++.|+++...
T Consensus 493 eQ~v~m~~ed~k~kkL~eil~~~--~~ppiIIFvN~kk~~d~lAk~LeK~g~~~~tlHg~k~qeQRe~aL~~fr~~t~d- 569 (673)
T KOG0333|consen 493 EQKVEMVSEDEKRKKLIEILESN--FDPPIIIFVNTKKGADALAKILEKAGYKVTTLHGGKSQEQRENALADFREGTGD- 569 (673)
T ss_pred heEEEEecchHHHHHHHHHHHhC--CCCCEEEEEechhhHHHHHHHHhhccceEEEeeCCccHHHHHHHHHHHHhcCCC-
Confidence 34445667788999999999754 467999999999999999999999999999999999999999999999987665
Q ss_pred EEEEeccccccccCcCccCEEEEeCCCCCccchhHHHHHHhhcCCC
Q psy2046 93 AFLLSTKAGGLGINLTAADTVIIHDVDFNPYNDKQAEDRCHRVGQT 138 (138)
Q Consensus 93 vll~~~~~~~~Gl~l~~~~~vi~~~~~~~~~~~~Q~~gR~~R~GQt 138 (138)
+|++|+++|+|+|++++++||+||+.-+..+|.|||||.+|.|+.
T Consensus 570 -IlVaTDvAgRGIDIpnVSlVinydmaksieDYtHRIGRTgRAGk~ 614 (673)
T KOG0333|consen 570 -ILVATDVAGRGIDIPNVSLVINYDMAKSIEDYTHRIGRTGRAGKS 614 (673)
T ss_pred -EEEEecccccCCCCCccceeeecchhhhHHHHHHHhccccccccC
Confidence 888999999999999999999999999999999999999999984
No 14
>COG0553 HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair]
Probab=99.91 E-value=1.2e-23 Score=168.65 Aligned_cols=120 Identities=55% Similarity=0.821 Sum_probs=113.5
Q ss_pred cccC-chHHHHHHHH-HHhhhCCC--eEEEEeccHHHHHHHHHHHhhcCCeEEEEeCCCChHHHHHHHHHHhcCCCceEE
Q psy2046 19 VVES-GKLKKLDEIL-PDLKKNGH--RVLIFSQFIFVLDILGHYMDIRGWRHLRLDGATQVSSRQELIDEYNRDQDLFAF 94 (138)
Q Consensus 19 ~~~s-~K~~~l~~ll-~~~~~~~~--k~iif~~~~~~~~~l~~~l~~~g~~~~~i~g~~~~~~R~~~~~~F~~~~~~~vl 94 (138)
...+ +|+..+.+++ ..+..++. ++++|+++..+++.++..++..++++..++|+++...|...+++|++++...++
T Consensus 687 ~~~s~~k~~~l~~ll~~~~~~~~~~~kvlifsq~t~~l~il~~~l~~~~~~~~~ldG~~~~~~r~~~i~~f~~~~~~~v~ 766 (866)
T COG0553 687 IQLSKGKLQALDELLLDKLLEEGHYHKVLIFSQFTPVLDLLEDYLKALGIKYVRLDGSTPAKRRQELIDRFNADEEEKVF 766 (866)
T ss_pred hhccchHHHHHHHHHHHHHHhhcccccEEEEeCcHHHHHHHHHHHHhcCCcEEEEeCCCChhhHHHHHHHhhcCCCCceE
Confidence 3445 8999999999 78888888 999999999999999999999999999999999999999999999998778899
Q ss_pred EEeccccccccCcCccCEEEEeCCCCCccchhHHHHHHhhcCCC
Q psy2046 95 LLSTKAGGLGINLTAADTVIIHDVDFNPYNDKQAEDRCHRVGQT 138 (138)
Q Consensus 95 l~~~~~~~~Gl~l~~~~~vi~~~~~~~~~~~~Q~~gR~~R~GQt 138 (138)
+++++++|.|+|++.|++||++|++|||..+.|+++|+||+||+
T Consensus 767 lls~kagg~glnLt~a~~vi~~d~~wnp~~~~Qa~dRa~RigQ~ 810 (866)
T COG0553 767 LLSLKAGGLGLNLTGADTVILFDPWWNPAVELQAIDRAHRIGQK 810 (866)
T ss_pred EEEecccccceeecccceEEEeccccChHHHHHHHHHHHHhcCc
Confidence 99999999999999999999999999999999999999999996
No 15
>cd00079 HELICc Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may not be an autonomously folding unit, but an integral part of the helicase; 4 helicase superfamilies at present according to the organization of their signature motifs; all helicases share the ability to unwind nucleic acid duplexes with a distinct directional polarity; they utilize the free energy from nucleoside triphosphate hydrolysis to fuel their translocation along DNA, unwinding the duplex in the process
Probab=99.91 E-value=2e-23 Score=132.67 Aligned_cols=114 Identities=29% Similarity=0.401 Sum_probs=105.2
Q ss_pred chHHHHHHHHHHhhhCCCeEEEEeccHHHHHHHHHHHhhcCCeEEEEeCCCChHHHHHHHHHHhcCCCceEEEEeccccc
Q psy2046 23 GKLKKLDEILPDLKKNGHRVLIFSQFIFVLDILGHYMDIRGWRHLRLDGATQVSSRQELIDEYNRDQDLFAFLLSTKAGG 102 (138)
Q Consensus 23 ~K~~~l~~ll~~~~~~~~k~iif~~~~~~~~~l~~~l~~~g~~~~~i~g~~~~~~R~~~~~~F~~~~~~~vll~~~~~~~ 102 (138)
.|...+.+++....+++.++|||+++....+.+.+.|+..+.++..+||+++..+|..+++.|+++.. .++++|.+++
T Consensus 12 ~k~~~i~~~i~~~~~~~~~~lvf~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~--~ili~t~~~~ 89 (131)
T cd00079 12 EKLEALLELLKEHLKKGGKVLIFCPSKKMLDELAELLRKPGIKVAALHGDGSQEEREEVLKDFREGEI--VVLVATDVIA 89 (131)
T ss_pred HHHHHHHHHHHhcccCCCcEEEEeCcHHHHHHHHHHHHhcCCcEEEEECCCCHHHHHHHHHHHHcCCC--cEEEEcChhh
Confidence 69999999988766567899999999999999999999888999999999999999999999998763 3777899999
Q ss_pred cccCcCccCEEEEeCCCCCccchhHHHHHHhhcCCC
Q psy2046 103 LGINLTAADTVIIHDVDFNPYNDKQAEDRCHRVGQT 138 (138)
Q Consensus 103 ~Gl~l~~~~~vi~~~~~~~~~~~~Q~~gR~~R~GQt 138 (138)
+|+|++.+++||+++++|++..+.|++||++|.||+
T Consensus 90 ~G~d~~~~~~vi~~~~~~~~~~~~Q~~GR~~R~~~~ 125 (131)
T cd00079 90 RGIDLPNVSVVINYDLPWSPSSYLQRIGRAGRAGQK 125 (131)
T ss_pred cCcChhhCCEEEEeCCCCCHHHheecccccccCCCC
Confidence 999999999999999999999999999999999984
No 16
>PTZ00110 helicase; Provisional
Probab=99.90 E-value=1.7e-23 Score=161.01 Aligned_cols=119 Identities=22% Similarity=0.369 Sum_probs=109.1
Q ss_pred ccccCchHHHHHHHHHHhhhCCCeEEEEeccHHHHHHHHHHHhhcCCeEEEEeCCCChHHHHHHHHHHhcCCCceEEEEe
Q psy2046 18 LVVESGKLKKLDEILPDLKKNGHRVLIFSQFIFVLDILGHYMDIRGWRHLRLDGATQVSSRQELIDEYNRDQDLFAFLLS 97 (138)
Q Consensus 18 ~~~~s~K~~~l~~ll~~~~~~~~k~iif~~~~~~~~~l~~~l~~~g~~~~~i~g~~~~~~R~~~~~~F~~~~~~~vll~~ 97 (138)
......|...|.+++..+...+.++||||++...++.|...|...|+++..+||++++.+|..++++|++++.. +|++
T Consensus 356 ~~~~~~k~~~L~~ll~~~~~~~~k~LIF~~t~~~a~~l~~~L~~~g~~~~~ihg~~~~~eR~~il~~F~~G~~~--ILVa 433 (545)
T PTZ00110 356 VVEEHEKRGKLKMLLQRIMRDGDKILIFVETKKGADFLTKELRLDGWPALCIHGDKKQEERTWVLNEFKTGKSP--IMIA 433 (545)
T ss_pred EEechhHHHHHHHHHHHhcccCCeEEEEecChHHHHHHHHHHHHcCCcEEEEECCCcHHHHHHHHHHHhcCCCc--EEEE
Confidence 34456788889999887766778999999999999999999999999999999999999999999999988654 7889
Q ss_pred ccccccccCcCccCEEEEeCCCCCccchhHHHHHHhhcCCC
Q psy2046 98 TKAGGLGINLTAADTVIIHDVDFNPYNDKQAEDRCHRVGQT 138 (138)
Q Consensus 98 ~~~~~~Gl~l~~~~~vi~~~~~~~~~~~~Q~~gR~~R~GQt 138 (138)
|+++++|+|++++++||+||+|++...|.||+||++|.|.+
T Consensus 434 Tdv~~rGIDi~~v~~VI~~d~P~s~~~yvqRiGRtGR~G~~ 474 (545)
T PTZ00110 434 TDVASRGLDVKDVKYVINFDFPNQIEDYVHRIGRTGRAGAK 474 (545)
T ss_pred cchhhcCCCcccCCEEEEeCCCCCHHHHHHHhcccccCCCC
Confidence 99999999999999999999999999999999999999864
No 17
>KOG0328|consensus
Probab=99.89 E-value=7.4e-23 Score=142.65 Aligned_cols=112 Identities=19% Similarity=0.245 Sum_probs=103.4
Q ss_pred chHHHHHHHHHHhhhCCCeEEEEeccHHHHHHHHHHHhhcCCeEEEEeCCCChHHHHHHHHHHhcCCCceEEEEeccccc
Q psy2046 23 GKLKKLDEILPDLKKNGHRVLIFSQFIFVLDILGHYMDIRGWRHLRLDGATQVSSRQELIDEYNRDQDLFAFLLSTKAGG 102 (138)
Q Consensus 23 ~K~~~l~~ll~~~~~~~~k~iif~~~~~~~~~l~~~l~~~g~~~~~i~g~~~~~~R~~~~~~F~~~~~~~vll~~~~~~~ 102 (138)
=|+..|+++-..+- -.+.+|||+++...++|.+.++..++.+.++||.+++++|++++.+|+.+++. +|++|++-+
T Consensus 252 wKfdtLcdLYd~Lt--ItQavIFcnTk~kVdwLtekm~~~nftVssmHGDm~qkERd~im~dFRsg~Sr--vLitTDVwa 327 (400)
T KOG0328|consen 252 WKFDTLCDLYDTLT--ITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMEQKERDKIMNDFRSGKSR--VLITTDVWA 327 (400)
T ss_pred hhHhHHHHHhhhhe--hheEEEEecccchhhHHHHHHHhhCceeeeccCCcchhHHHHHHHHhhcCCce--EEEEechhh
Confidence 38888888877653 34899999999999999999999999999999999999999999999998765 788999999
Q ss_pred cccCcCccCEEEEeCCCCCccchhHHHHHHhhcCCC
Q psy2046 103 LGINLTAADTVIIHDVDFNPYNDKQAEDRCHRVGQT 138 (138)
Q Consensus 103 ~Gl~l~~~~~vi~~~~~~~~~~~~Q~~gR~~R~GQt 138 (138)
+|+|+|.++.||+||.|-|...|++|+||.||.|.+
T Consensus 328 RGiDv~qVslviNYDLP~nre~YIHRIGRSGRFGRk 363 (400)
T KOG0328|consen 328 RGIDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRK 363 (400)
T ss_pred ccCCcceeEEEEecCCCccHHHHhhhhccccccCCc
Confidence 999999999999999999999999999999999975
No 18
>KOG1000|consensus
Probab=99.89 E-value=1.3e-22 Score=150.10 Aligned_cols=117 Identities=30% Similarity=0.462 Sum_probs=110.0
Q ss_pred CchHHHHHHHHHH----hhhCCCeEEEEeccHHHHHHHHHHHhhcCCeEEEEeCCCChHHHHHHHHHHhcCCCceEEEEe
Q psy2046 22 SGKLKKLDEILPD----LKKNGHRVLIFSQFIFVLDILGHYMDIRGWRHLRLDGATQVSSRQELIDEYNRDQDLFAFLLS 97 (138)
Q Consensus 22 s~K~~~l~~ll~~----~~~~~~k~iif~~~~~~~~~l~~~l~~~g~~~~~i~g~~~~~~R~~~~~~F~~~~~~~vll~~ 97 (138)
-.|+..+++.|.+ ....+.|++||+++..++|.|...+.++++....|+|+++..+|+..++.|+.++..+|-+++
T Consensus 471 iaK~~av~eyi~~~~~l~d~~~~KflVFaHH~~vLd~Iq~~~~~r~vg~IRIDGst~s~~R~ll~qsFQ~seev~VAvls 550 (689)
T KOG1000|consen 471 IAKAAAVCEYILENYFLPDAPPRKFLVFAHHQIVLDTIQVEVNKRKVGSIRIDGSTPSHRRTLLCQSFQTSEEVRVAVLS 550 (689)
T ss_pred ccccHHHHHHHHhCcccccCCCceEEEEehhHHHHHHHHHHHHHcCCCeEEecCCCCchhHHHHHHHhccccceEEEEEE
Confidence 3688888888876 334578999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccccCcCccCEEEEeCCCCCccchhHHHHHHhhcCCC
Q psy2046 98 TKAGGLGINLTAADTVIIHDVDFNPYNDKQAEDRCHRVGQT 138 (138)
Q Consensus 98 ~~~~~~Gl~l~~~~~vi~~~~~~~~~~~~Q~~gR~~R~GQt 138 (138)
..++|.||+|+.|+.||+.+.+|||..+.||.+|+||+|||
T Consensus 551 ItA~gvGLt~tAa~~VVFaEL~wnPgvLlQAEDRaHRiGQk 591 (689)
T KOG1000|consen 551 ITAAGVGLTLTAASVVVFAELHWNPGVLLQAEDRAHRIGQK 591 (689)
T ss_pred EeecccceeeeccceEEEEEecCCCceEEechhhhhhcccc
Confidence 99999999999999999999999999999999999999997
No 19
>KOG4439|consensus
Probab=99.88 E-value=2e-22 Score=153.81 Aligned_cols=122 Identities=34% Similarity=0.518 Sum_probs=113.7
Q ss_pred cccccCchHHHHHHHHHHh-hhCCCeEEEEeccHHHHHHHHHHHhhcCCeEEEEeCCCChHHHHHHHHHHhcCCC-ceEE
Q psy2046 17 DLVVESGKLKKLDEILPDL-KKNGHRVLIFSQFIFVLDILGHYMDIRGWRHLRLDGATQVSSRQELIDEYNRDQD-LFAF 94 (138)
Q Consensus 17 ~~~~~s~K~~~l~~ll~~~-~~~~~k~iif~~~~~~~~~l~~~l~~~g~~~~~i~g~~~~~~R~~~~~~F~~~~~-~~vl 94 (138)
+....|.|+..+.+.+..+ ....+|++|-+++..+++.+...+.+.|..|..++|.....+|+.+++.|+..+. .+|+
T Consensus 723 e~~r~S~Ki~~~l~~le~i~~~skeK~viVSQwtsvLniv~~hi~~~g~~y~si~Gqv~vK~Rq~iv~~FN~~k~~~rVm 802 (901)
T KOG4439|consen 723 EPDRPSCKIAMVLEILETILTSSKEKVVIVSQWTSVLNIVRKHIQKGGHIYTSITGQVLVKDRQEIVDEFNQEKGGARVM 802 (901)
T ss_pred ccccchhHHHHHHHHHHHHhhcccceeeehhHHHHHHHHHHHHHhhCCeeeeeecCccchhHHHHHHHHHHhccCCceEE
Confidence 4456789999999999887 4557899999999999999999999999999999999999999999999996544 8899
Q ss_pred EEeccccccccCcCccCEEEEeCCCCCccchhHHHHHHhhcCCC
Q psy2046 95 LLSTKAGGLGINLTAADTVIIHDVDFNPYNDKQAEDRCHRVGQT 138 (138)
Q Consensus 95 l~~~~~~~~Gl~l~~~~~vi~~~~~~~~~~~~Q~~gR~~R~GQt 138 (138)
|++..++|.||||.++||+|++|++|||..+.||..|++|+||+
T Consensus 803 LlSLtAGGVGLNL~GaNHlilvDlHWNPaLEqQAcDRIYR~GQk 846 (901)
T KOG4439|consen 803 LLSLTAGGVGLNLIGANHLILVDLHWNPALEQQACDRIYRMGQK 846 (901)
T ss_pred EEEEccCcceeeecccceEEEEecccCHHHHHHHHHHHHHhccc
Confidence 99999999999999999999999999999999999999999996
No 20
>KOG0386|consensus
Probab=99.88 E-value=6.1e-23 Score=160.97 Aligned_cols=138 Identities=51% Similarity=0.817 Sum_probs=124.8
Q ss_pred CccccccccCCCCC-----------CCcccccCchHHHHHHHHHHhhhCCCeEEEEeccHHHHHHHHHHHhhcCCeEEEE
Q psy2046 1 MALKQTLDCAKYKV-----------PDDLVVESGKLKKLDEILPDLKKNGHRVLIFSQFIFVLDILGHYMDIRGWRHLRL 69 (138)
Q Consensus 1 ~~l~~~~~~~~~~~-----------~~~~~~~s~K~~~l~~ll~~~~~~~~k~iif~~~~~~~~~l~~~l~~~g~~~~~i 69 (138)
|-|+.+|+++.... +.+++..++|+..|..++-.+...|.+++.|++-....+.++++|.-.++.|..+
T Consensus 677 mqLRKiCNHP~lf~~ve~~~~~~~~~~dL~R~sGKfELLDRiLPKLkatgHRVLlF~qMTrlmdimEdyL~~~~~kYlRL 756 (1157)
T KOG0386|consen 677 MQLRKLCNHPYLFANVENSYTLHYDIKDLVRVSGKFELLDRILPKLKATGHRVLLFSQMTRLMDILEDYLQIREYKYLRL 756 (1157)
T ss_pred HHHHHhcCCchhhhhhccccccccChhHHHHhccHHHHHHhhhHHHHhcCcchhhHHHHHHHHHHHHHHHhhhhhheeee
Confidence 45777777775541 1367788999999999999999999999999999999999999999999999999
Q ss_pred eCCCChHHHHHHHHHHhcC-CCceEEEEeccccccccCcCccCEEEEeCCCCCccchhHHHHHHhhcCCC
Q psy2046 70 DGATQVSSRQELIDEYNRD-QDLFAFLLSTKAGGLGINLTAADTVIIHDVDFNPYNDKQAEDRCHRVGQT 138 (138)
Q Consensus 70 ~g~~~~~~R~~~~~~F~~~-~~~~vll~~~~~~~~Gl~l~~~~~vi~~~~~~~~~~~~Q~~gR~~R~GQt 138 (138)
+|.+..++|...++.|+.+ ....++|.+|.++|.|+|++-|++||+||+.|||....||-.|+||+||+
T Consensus 757 DG~TK~~eRg~ll~~FN~Pds~yf~FllstragglglNlQtadtviifdsdwnp~~d~qaqdrahrigq~ 826 (1157)
T KOG0386|consen 757 DGQTKVEERGDLLEIFNAPDSPYFIFLLSTRAGGLGLNLQTADTVIIFDSDWNPHQDLQAQDRAHRIGQK 826 (1157)
T ss_pred cCCcchhhHHHHHHHhcCCCCceeeeeeeecccccccchhhcceEEEecCCCCchhHHHHHHHHHHhhch
Confidence 9999999999999999954 44667889999999999999999999999999999999999999999996
No 21
>COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]
Probab=99.88 E-value=1.6e-22 Score=154.47 Aligned_cols=112 Identities=21% Similarity=0.366 Sum_probs=102.6
Q ss_pred chHHHHHHHHHHhhhCCCeEEEEeccHHHHHHHHHHHhhcCCeEEEEeCCCChHHHHHHHHHHhcCCCceEEEEeccccc
Q psy2046 23 GKLKKLDEILPDLKKNGHRVLIFSQFIFVLDILGHYMDIRGWRHLRLDGATQVSSRQELIDEYNRDQDLFAFLLSTKAGG 102 (138)
Q Consensus 23 ~K~~~l~~ll~~~~~~~~k~iif~~~~~~~~~l~~~l~~~g~~~~~i~g~~~~~~R~~~~~~F~~~~~~~vll~~~~~~~ 102 (138)
.|+..|..++... ...++|||++.+..++.|...|...|+++..+||++++.+|.+.++.|++++.. +|++|++++
T Consensus 259 ~k~~~L~~ll~~~--~~~~~IVF~~tk~~~~~l~~~l~~~g~~~~~lhG~l~q~~R~~~l~~F~~g~~~--vLVaTDvaa 334 (513)
T COG0513 259 EKLELLLKLLKDE--DEGRVIVFVRTKRLVEELAESLRKRGFKVAALHGDLPQEERDRALEKFKDGELR--VLVATDVAA 334 (513)
T ss_pred HHHHHHHHHHhcC--CCCeEEEEeCcHHHHHHHHHHHHHCCCeEEEecCCCCHHHHHHHHHHHHcCCCC--EEEEechhh
Confidence 3888888888743 334799999999999999999999999999999999999999999999988655 788899999
Q ss_pred cccCcCccCEEEEeCCCCCccchhHHHHHHhhcCCC
Q psy2046 103 LGINLTAADTVIIHDVDFNPYNDKQAEDRCHRVGQT 138 (138)
Q Consensus 103 ~Gl~l~~~~~vi~~~~~~~~~~~~Q~~gR~~R~GQt 138 (138)
+|||+++.++||+||.|.++..|.||+||++|.|.+
T Consensus 335 RGiDi~~v~~VinyD~p~~~e~yvHRiGRTgRaG~~ 370 (513)
T COG0513 335 RGLDIPDVSHVINYDLPLDPEDYVHRIGRTGRAGRK 370 (513)
T ss_pred ccCCccccceeEEccCCCCHHHheeccCccccCCCC
Confidence 999999999999999999999999999999999853
No 22
>PRK04837 ATP-dependent RNA helicase RhlB; Provisional
Probab=99.88 E-value=2.2e-22 Score=150.91 Aligned_cols=113 Identities=19% Similarity=0.259 Sum_probs=101.9
Q ss_pred CchHHHHHHHHHHhhhCCCeEEEEeccHHHHHHHHHHHhhcCCeEEEEeCCCChHHHHHHHHHHhcCCCceEEEEecccc
Q psy2046 22 SGKLKKLDEILPDLKKNGHRVLIFSQFIFVLDILGHYMDIRGWRHLRLDGATQVSSRQELIDEYNRDQDLFAFLLSTKAG 101 (138)
Q Consensus 22 s~K~~~l~~ll~~~~~~~~k~iif~~~~~~~~~l~~~l~~~g~~~~~i~g~~~~~~R~~~~~~F~~~~~~~vll~~~~~~ 101 (138)
..|...+..++.. ....++|||+++...++.+...|...|+++..+||++++++|.+++++|++++.. +|++|+++
T Consensus 240 ~~k~~~l~~ll~~--~~~~~~lVF~~t~~~~~~l~~~L~~~g~~v~~lhg~~~~~~R~~~l~~F~~g~~~--vLVaTdv~ 315 (423)
T PRK04837 240 EEKMRLLQTLIEE--EWPDRAIIFANTKHRCEEIWGHLAADGHRVGLLTGDVAQKKRLRILEEFTRGDLD--ILVATDVA 315 (423)
T ss_pred HHHHHHHHHHHHh--cCCCeEEEEECCHHHHHHHHHHHHhCCCcEEEecCCCChhHHHHHHHHHHcCCCc--EEEEechh
Confidence 4566666666653 2457999999999999999999999999999999999999999999999988654 88899999
Q ss_pred ccccCcCccCEEEEeCCCCCccchhHHHHHHhhcCCC
Q psy2046 102 GLGINLTAADTVIIHDVDFNPYNDKQAEDRCHRVGQT 138 (138)
Q Consensus 102 ~~Gl~l~~~~~vi~~~~~~~~~~~~Q~~gR~~R~GQt 138 (138)
++|+|++++++||+||+|+++..|.||+||++|.|+.
T Consensus 316 ~rGiDip~v~~VI~~d~P~s~~~yiqR~GR~gR~G~~ 352 (423)
T PRK04837 316 ARGLHIPAVTHVFNYDLPDDCEDYVHRIGRTGRAGAS 352 (423)
T ss_pred hcCCCccccCEEEEeCCCCchhheEeccccccCCCCC
Confidence 9999999999999999999999999999999999974
No 23
>PF00271 Helicase_C: Helicase conserved C-terminal domain; InterPro: IPR001650 The domain, which defines this group of proteins is found in a wide variety of helicases and helicase related proteins. It may be that this is not an autonomously folding unit, but an integral part of the helicase. The eukaryotic translation initiation factor 4A (eIF4A) is a member of the DEA(D/H)-box RNA helicase family This is a diverse group of proteins that couples an ATPase activity to RNA binding and unwinding. The structure of the carboxyl-terminal domain of eIF4A has been determined to 1.75 A resolution; it has a parallel alpha-beta topology that superimposes, with minor variations, on the structures and conserved motifs of the equivalent domain in other, distantly related helicases [].; GO: 0003676 nucleic acid binding, 0004386 helicase activity, 0005524 ATP binding; PDB: 2Z83_A 2JGN_C 2I4I_A 2BMF_A 2BHR_B 1WP9_E 2WAX_C 2WAY_C 3JUX_A 3DIN_B ....
Probab=99.88 E-value=1.2e-22 Score=118.92 Aligned_cols=78 Identities=27% Similarity=0.448 Sum_probs=73.2
Q ss_pred HHHhhcCCeEEEEeCCCChHHHHHHHHHHhcCCCceEEEEeccccccccCcCccCEEEEeCCCCCccchhHHHHHHhhcC
Q psy2046 57 HYMDIRGWRHLRLDGATQVSSRQELIDEYNRDQDLFAFLLSTKAGGLGINLTAADTVIIHDVDFNPYNDKQAEDRCHRVG 136 (138)
Q Consensus 57 ~~l~~~g~~~~~i~g~~~~~~R~~~~~~F~~~~~~~vll~~~~~~~~Gl~l~~~~~vi~~~~~~~~~~~~Q~~gR~~R~G 136 (138)
+.|+..|+++..+||+++..+|..++++|+.+... +|++|+++++|+|++.+++||+++++|++..|.|++||++|.|
T Consensus 1 ~~L~~~~~~~~~i~~~~~~~~r~~~~~~f~~~~~~--vli~t~~~~~Gid~~~~~~vi~~~~~~~~~~~~Q~~GR~~R~g 78 (78)
T PF00271_consen 1 KFLEKKGIKVAIIHGDMSQKERQEILKKFNSGEIR--VLIATDILGEGIDLPDASHVIFYDPPWSPEEYIQRIGRAGRIG 78 (78)
T ss_dssp HHHHHTTSSEEEESTTSHHHHHHHHHHHHHTTSSS--EEEESCGGTTSSTSTTESEEEESSSESSHHHHHHHHTTSSTTT
T ss_pred CChHHCCCcEEEEECCCCHHHHHHHHHHhhccCce--EEEeeccccccccccccccccccccCCCHHHHHHHhhcCCCCC
Confidence 36788899999999999999999999999988663 7888999999999999999999999999999999999999998
No 24
>KOG0330|consensus
Probab=99.87 E-value=5.3e-22 Score=143.10 Aligned_cols=113 Identities=19% Similarity=0.310 Sum_probs=103.6
Q ss_pred cCchHHHHHHHHHHhhhCCCeEEEEeccHHHHHHHHHHHhhcCCeEEEEeCCCChHHHHHHHHHHhcCCCceEEEEeccc
Q psy2046 21 ESGKLKKLDEILPDLKKNGHRVLIFSQFIFVLDILGHYMDIRGWRHLRLDGATQVSSRQELIDEYNRDQDLFAFLLSTKA 100 (138)
Q Consensus 21 ~s~K~~~l~~ll~~~~~~~~k~iif~~~~~~~~~l~~~l~~~g~~~~~i~g~~~~~~R~~~~~~F~~~~~~~vll~~~~~ 100 (138)
..-|-..|..++++. .|..+||||+.....+.++-.|+..|+.+..+||.|++..|..++++|+++... +|++|++
T Consensus 284 ~k~K~~yLV~ll~e~--~g~s~iVF~~t~~tt~~la~~L~~lg~~a~~LhGqmsq~~Rlg~l~~Fk~~~r~--iLv~TDV 359 (476)
T KOG0330|consen 284 GKDKDTYLVYLLNEL--AGNSVIVFCNTCNTTRFLALLLRNLGFQAIPLHGQMSQSKRLGALNKFKAGARS--ILVCTDV 359 (476)
T ss_pred ccccchhHHHHHHhh--cCCcEEEEEeccchHHHHHHHHHhcCcceecccchhhHHHHHHHHHHHhccCCc--EEEecch
Confidence 345667788888754 457899999999999999999999999999999999999999999999998765 8999999
Q ss_pred cccccCcCccCEEEEeCCCCCccchhHHHHHHhhcCC
Q psy2046 101 GGLGINLTAADTVIIHDVDFNPYNDKQAEDRCHRVGQ 137 (138)
Q Consensus 101 ~~~Gl~l~~~~~vi~~~~~~~~~~~~Q~~gR~~R~GQ 137 (138)
+++|||++.+++||+||.|-+..+|+||.||++|.|.
T Consensus 360 aSRGLDip~Vd~VVNyDiP~~skDYIHRvGRtaRaGr 396 (476)
T KOG0330|consen 360 ASRGLDIPHVDVVVNYDIPTHSKDYIHRVGRTARAGR 396 (476)
T ss_pred hcccCCCCCceEEEecCCCCcHHHHHHHcccccccCC
Confidence 9999999999999999999999999999999999984
No 25
>PLN00206 DEAD-box ATP-dependent RNA helicase; Provisional
Probab=99.87 E-value=1.4e-21 Score=149.68 Aligned_cols=117 Identities=21% Similarity=0.305 Sum_probs=103.3
Q ss_pred ccCchHHHHHHHHHHhhhCCCeEEEEeccHHHHHHHHHHHhh-cCCeEEEEeCCCChHHHHHHHHHHhcCCCceEEEEec
Q psy2046 20 VESGKLKKLDEILPDLKKNGHRVLIFSQFIFVLDILGHYMDI-RGWRHLRLDGATQVSSRQELIDEYNRDQDLFAFLLST 98 (138)
Q Consensus 20 ~~s~K~~~l~~ll~~~~~~~~k~iif~~~~~~~~~l~~~l~~-~g~~~~~i~g~~~~~~R~~~~~~F~~~~~~~vll~~~ 98 (138)
....|...+.+++........++|||+++...++.+...|.. .|+.+..+||++++.+|..++++|++++.. +|++|
T Consensus 348 ~~~~k~~~l~~~l~~~~~~~~~~iVFv~s~~~a~~l~~~L~~~~g~~~~~~Hg~~~~~eR~~il~~Fr~G~~~--ILVaT 425 (518)
T PLN00206 348 ETKQKKQKLFDILKSKQHFKPPAVVFVSSRLGADLLANAITVVTGLKALSIHGEKSMKERREVMKSFLVGEVP--VIVAT 425 (518)
T ss_pred cchhHHHHHHHHHHhhcccCCCEEEEcCCchhHHHHHHHHhhccCcceEEeeCCCCHHHHHHHHHHHHCCCCC--EEEEe
Confidence 344577777787765444456899999999999999999975 589999999999999999999999998654 78899
Q ss_pred cccccccCcCccCEEEEeCCCCCccchhHHHHHHhhcCCC
Q psy2046 99 KAGGLGINLTAADTVIIHDVDFNPYNDKQAEDRCHRVGQT 138 (138)
Q Consensus 99 ~~~~~Gl~l~~~~~vi~~~~~~~~~~~~Q~~gR~~R~GQt 138 (138)
+++++|+|++++++||+||+|.+...|.||+||++|.|.+
T Consensus 426 dvl~rGiDip~v~~VI~~d~P~s~~~yihRiGRaGR~g~~ 465 (518)
T PLN00206 426 GVLGRGVDLLRVRQVIIFDMPNTIKEYIHQIGRASRMGEK 465 (518)
T ss_pred cHhhccCCcccCCEEEEeCCCCCHHHHHHhccccccCCCC
Confidence 9999999999999999999999999999999999999963
No 26
>PRK11776 ATP-dependent RNA helicase DbpA; Provisional
Probab=99.86 E-value=2.3e-21 Score=146.76 Aligned_cols=113 Identities=17% Similarity=0.298 Sum_probs=102.2
Q ss_pred CchHHHHHHHHHHhhhCCCeEEEEeccHHHHHHHHHHHhhcCCeEEEEeCCCChHHHHHHHHHHhcCCCceEEEEecccc
Q psy2046 22 SGKLKKLDEILPDLKKNGHRVLIFSQFIFVLDILGHYMDIRGWRHLRLDGATQVSSRQELIDEYNRDQDLFAFLLSTKAG 101 (138)
Q Consensus 22 s~K~~~l~~ll~~~~~~~~k~iif~~~~~~~~~l~~~l~~~g~~~~~i~g~~~~~~R~~~~~~F~~~~~~~vll~~~~~~ 101 (138)
..|+..+..++.. ..+.++||||++...++.+...|...|+.+..+||++++.+|..+++.|+++... +|++|+++
T Consensus 227 ~~k~~~l~~ll~~--~~~~~~lVF~~t~~~~~~l~~~L~~~~~~v~~~hg~~~~~eR~~~l~~F~~g~~~--vLVaTdv~ 302 (460)
T PRK11776 227 DERLPALQRLLLH--HQPESCVVFCNTKKECQEVADALNAQGFSALALHGDLEQRDRDQVLVRFANRSCS--VLVATDVA 302 (460)
T ss_pred HHHHHHHHHHHHh--cCCCceEEEECCHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHHcCCCc--EEEEeccc
Confidence 3477777777753 2456899999999999999999999999999999999999999999999988654 78889999
Q ss_pred ccccCcCccCEEEEeCCCCCccchhHHHHHHhhcCCC
Q psy2046 102 GLGINLTAADTVIIHDVDFNPYNDKQAEDRCHRVGQT 138 (138)
Q Consensus 102 ~~Gl~l~~~~~vi~~~~~~~~~~~~Q~~gR~~R~GQt 138 (138)
++|+|++++++||+++.|.++..|.||+||++|.|++
T Consensus 303 ~rGiDi~~v~~VI~~d~p~~~~~yiqR~GRtGR~g~~ 339 (460)
T PRK11776 303 ARGLDIKALEAVINYELARDPEVHVHRIGRTGRAGSK 339 (460)
T ss_pred ccccchhcCCeEEEecCCCCHhHhhhhcccccCCCCc
Confidence 9999999999999999999999999999999999863
No 27
>KOG1015|consensus
Probab=99.86 E-value=2.2e-21 Score=152.01 Aligned_cols=122 Identities=41% Similarity=0.623 Sum_probs=111.8
Q ss_pred cccccCchHHHHHHHHHHhhhCCCeEEEEeccHHHHHHHHHHHhhc----------------------CCeEEEEeCCCC
Q psy2046 17 DLVVESGKLKKLDEILPDLKKNGHRVLIFSQFIFVLDILGHYMDIR----------------------GWRHLRLDGATQ 74 (138)
Q Consensus 17 ~~~~~s~K~~~l~~ll~~~~~~~~k~iif~~~~~~~~~l~~~l~~~----------------------g~~~~~i~g~~~ 74 (138)
+....|+|+-.|.++|....+-|+|++||+++...++.|+.+|... |..|..++|+++
T Consensus 1120 ~v~~~SgKmiLLleIL~mceeIGDKlLVFSQSL~SLdLIe~fLe~v~r~gk~~~d~~~~~~~eGkW~~GkDyyriDGst~ 1199 (1567)
T KOG1015|consen 1120 EVLEHSGKMILLLEILRMCEEIGDKLLVFSQSLISLDLIEDFLELVSREGKEDKDKPLIYKGEGKWLRGKDYYRLDGSTT 1199 (1567)
T ss_pred hhhhcCcceehHHHHHHHHHHhcceeEEeecccchhHHHHHHHHhhcccCccccccccccccccceecCCceEEecCccc
Confidence 4566799999999999988888999999999999999999999742 567899999999
Q ss_pred hHHHHHHHHHHhcCCC--ceEEEEeccccccccCcCccCEEEEeCCCCCccchhHHHHHHhhcCCC
Q psy2046 75 VSSRQELIDEYNRDQD--LFAFLLSTKAGGLGINLTAADTVIIHDVDFNPYNDKQAEDRCHRVGQT 138 (138)
Q Consensus 75 ~~~R~~~~~~F~~~~~--~~vll~~~~~~~~Gl~l~~~~~vi~~~~~~~~~~~~Q~~gR~~R~GQt 138 (138)
..+|.+..+.|++... .+++|+||.+|+.|+||..||.||+||..|||....|+|=|+||+|||
T Consensus 1200 s~~R~k~~~~FNdp~NlRaRl~LISTRAGsLGiNLvAANRVIIfDasWNPSyDtQSIFRvyRfGQt 1265 (1567)
T KOG1015|consen 1200 SQSRKKWAEEFNDPTNLRARLFLISTRAGSLGINLVAANRVIIFDASWNPSYDTQSIFRVYRFGQT 1265 (1567)
T ss_pred HHHHHHHHHHhcCcccceeEEEEEeeccCccccceeecceEEEEecccCCccchHHHHHHHhhcCc
Confidence 9999999999996533 567999999999999999999999999999999999999999999997
No 28
>PRK04537 ATP-dependent RNA helicase RhlB; Provisional
Probab=99.86 E-value=2.3e-21 Score=149.86 Aligned_cols=113 Identities=19% Similarity=0.334 Sum_probs=101.1
Q ss_pred CchHHHHHHHHHHhhhCCCeEEEEeccHHHHHHHHHHHhhcCCeEEEEeCCCChHHHHHHHHHHhcCCCceEEEEecccc
Q psy2046 22 SGKLKKLDEILPDLKKNGHRVLIFSQFIFVLDILGHYMDIRGWRHLRLDGATQVSSRQELIDEYNRDQDLFAFLLSTKAG 101 (138)
Q Consensus 22 s~K~~~l~~ll~~~~~~~~k~iif~~~~~~~~~l~~~l~~~g~~~~~i~g~~~~~~R~~~~~~F~~~~~~~vll~~~~~~ 101 (138)
..|+..+..++.. ..+.++|||+++...++.|.+.|...++.+..+||++++.+|.+++++|++++.. +|++|+++
T Consensus 242 ~~k~~~L~~ll~~--~~~~k~LVF~nt~~~ae~l~~~L~~~g~~v~~lhg~l~~~eR~~il~~Fr~G~~~--VLVaTdv~ 317 (572)
T PRK04537 242 EEKQTLLLGLLSR--SEGARTMVFVNTKAFVERVARTLERHGYRVGVLSGDVPQKKRESLLNRFQKGQLE--ILVATDVA 317 (572)
T ss_pred HHHHHHHHHHHhc--ccCCcEEEEeCCHHHHHHHHHHHHHcCCCEEEEeCCCCHHHHHHHHHHHHcCCCe--EEEEehhh
Confidence 3466666666642 3467999999999999999999999999999999999999999999999987654 78899999
Q ss_pred ccccCcCccCEEEEeCCCCCccchhHHHHHHhhcCCC
Q psy2046 102 GLGINLTAADTVIIHDVDFNPYNDKQAEDRCHRVGQT 138 (138)
Q Consensus 102 ~~Gl~l~~~~~vi~~~~~~~~~~~~Q~~gR~~R~GQt 138 (138)
++|||++++++||+||.|+++..|.||+||++|.|.+
T Consensus 318 arGIDip~V~~VInyd~P~s~~~yvqRiGRaGR~G~~ 354 (572)
T PRK04537 318 ARGLHIDGVKYVYNYDLPFDAEDYVHRIGRTARLGEE 354 (572)
T ss_pred hcCCCccCCCEEEEcCCCCCHHHHhhhhcccccCCCC
Confidence 9999999999999999999999999999999999863
No 29
>PRK11192 ATP-dependent RNA helicase SrmB; Provisional
Probab=99.86 E-value=3.6e-21 Score=144.76 Aligned_cols=111 Identities=20% Similarity=0.228 Sum_probs=98.8
Q ss_pred chHHHHHHHHHHhhhCCCeEEEEeccHHHHHHHHHHHhhcCCeEEEEeCCCChHHHHHHHHHHhcCCCceEEEEeccccc
Q psy2046 23 GKLKKLDEILPDLKKNGHRVLIFSQFIFVLDILGHYMDIRGWRHLRLDGATQVSSRQELIDEYNRDQDLFAFLLSTKAGG 102 (138)
Q Consensus 23 ~K~~~l~~ll~~~~~~~~k~iif~~~~~~~~~l~~~l~~~g~~~~~i~g~~~~~~R~~~~~~F~~~~~~~vll~~~~~~~ 102 (138)
.|...+..++.. ....++|||+++...++.+...|...|+.+..+||++++.+|..+++.|++|... +|++|++++
T Consensus 231 ~k~~~l~~l~~~--~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~l~g~~~~~~R~~~l~~f~~G~~~--vLVaTd~~~ 306 (434)
T PRK11192 231 HKTALLCHLLKQ--PEVTRSIVFVRTRERVHELAGWLRKAGINCCYLEGEMVQAKRNEAIKRLTDGRVN--VLVATDVAA 306 (434)
T ss_pred HHHHHHHHHHhc--CCCCeEEEEeCChHHHHHHHHHHHhCCCCEEEecCCCCHHHHHHHHHHHhCCCCc--EEEEccccc
Confidence 355555555532 2457999999999999999999999999999999999999999999999988654 788899999
Q ss_pred cccCcCccCEEEEeCCCCCccchhHHHHHHhhcCC
Q psy2046 103 LGINLTAADTVIIHDVDFNPYNDKQAEDRCHRVGQ 137 (138)
Q Consensus 103 ~Gl~l~~~~~vi~~~~~~~~~~~~Q~~gR~~R~GQ 137 (138)
+|+|++++++||+||+|++...|.||+||++|.|.
T Consensus 307 ~GiDip~v~~VI~~d~p~s~~~yiqr~GR~gR~g~ 341 (434)
T PRK11192 307 RGIDIDDVSHVINFDMPRSADTYLHRIGRTGRAGR 341 (434)
T ss_pred cCccCCCCCEEEEECCCCCHHHHhhcccccccCCC
Confidence 99999999999999999999999999999999986
No 30
>PRK01297 ATP-dependent RNA helicase RhlB; Provisional
Probab=99.86 E-value=7.7e-21 Score=144.43 Aligned_cols=114 Identities=19% Similarity=0.264 Sum_probs=101.7
Q ss_pred cCchHHHHHHHHHHhhhCCCeEEEEeccHHHHHHHHHHHhhcCCeEEEEeCCCChHHHHHHHHHHhcCCCceEEEEeccc
Q psy2046 21 ESGKLKKLDEILPDLKKNGHRVLIFSQFIFVLDILGHYMDIRGWRHLRLDGATQVSSRQELIDEYNRDQDLFAFLLSTKA 100 (138)
Q Consensus 21 ~s~K~~~l~~ll~~~~~~~~k~iif~~~~~~~~~l~~~l~~~g~~~~~i~g~~~~~~R~~~~~~F~~~~~~~vll~~~~~ 100 (138)
.+.|...+.+++.. ....++|||++....++.+...|...|+.+..+||.+++.+|.++++.|++++.. +|++|++
T Consensus 319 ~~~k~~~l~~ll~~--~~~~~~IVF~~s~~~~~~l~~~L~~~~~~~~~~~g~~~~~~R~~~~~~Fr~G~~~--vLvaT~~ 394 (475)
T PRK01297 319 GSDKYKLLYNLVTQ--NPWERVMVFANRKDEVRRIEERLVKDGINAAQLSGDVPQHKRIKTLEGFREGKIR--VLVATDV 394 (475)
T ss_pred chhHHHHHHHHHHh--cCCCeEEEEeCCHHHHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHHhCCCCc--EEEEccc
Confidence 45566666666653 2356999999999999999999999999999999999999999999999988654 7788999
Q ss_pred cccccCcCccCEEEEeCCCCCccchhHHHHHHhhcCCC
Q psy2046 101 GGLGINLTAADTVIIHDVDFNPYNDKQAEDRCHRVGQT 138 (138)
Q Consensus 101 ~~~Gl~l~~~~~vi~~~~~~~~~~~~Q~~gR~~R~GQt 138 (138)
+++|+|++++++||++++|++...|.|++||++|.|+.
T Consensus 395 l~~GIDi~~v~~VI~~~~P~s~~~y~Qr~GRaGR~g~~ 432 (475)
T PRK01297 395 AGRGIHIDGISHVINFTLPEDPDDYVHRIGRTGRAGAS 432 (475)
T ss_pred cccCCcccCCCEEEEeCCCCCHHHHHHhhCccCCCCCC
Confidence 99999999999999999999999999999999999963
No 31
>PRK10590 ATP-dependent RNA helicase RhlE; Provisional
Probab=99.85 E-value=5e-21 Score=144.82 Aligned_cols=98 Identities=16% Similarity=0.254 Sum_probs=92.4
Q ss_pred CCeEEEEeccHHHHHHHHHHHhhcCCeEEEEeCCCChHHHHHHHHHHhcCCCceEEEEeccccccccCcCccCEEEEeCC
Q psy2046 39 GHRVLIFSQFIFVLDILGHYMDIRGWRHLRLDGATQVSSRQELIDEYNRDQDLFAFLLSTKAGGLGINLTAADTVIIHDV 118 (138)
Q Consensus 39 ~~k~iif~~~~~~~~~l~~~l~~~g~~~~~i~g~~~~~~R~~~~~~F~~~~~~~vll~~~~~~~~Gl~l~~~~~vi~~~~ 118 (138)
..++|||+++...++.+...|...|+++..+||++++.+|.+++++|++++.. +|++|+++++|+|++++++||+|++
T Consensus 245 ~~~~lVF~~t~~~~~~l~~~L~~~g~~~~~lhg~~~~~~R~~~l~~F~~g~~~--iLVaTdv~~rGiDip~v~~VI~~~~ 322 (456)
T PRK10590 245 WQQVLVFTRTKHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSGDIR--VLVATDIAARGLDIEELPHVVNYEL 322 (456)
T ss_pred CCcEEEEcCcHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHcCCCc--EEEEccHHhcCCCcccCCEEEEeCC
Confidence 46899999999999999999999999999999999999999999999988654 7889999999999999999999999
Q ss_pred CCCccchhHHHHHHhhcCCC
Q psy2046 119 DFNPYNDKQAEDRCHRVGQT 138 (138)
Q Consensus 119 ~~~~~~~~Q~~gR~~R~GQt 138 (138)
|.++..|.|++||++|.|++
T Consensus 323 P~~~~~yvqR~GRaGR~g~~ 342 (456)
T PRK10590 323 PNVPEDYVHRIGRTGRAAAT 342 (456)
T ss_pred CCCHHHhhhhccccccCCCC
Confidence 99999999999999999863
No 32
>PRK13766 Hef nuclease; Provisional
Probab=99.85 E-value=1.3e-20 Score=150.23 Aligned_cols=117 Identities=21% Similarity=0.337 Sum_probs=105.8
Q ss_pred cccCchHHHHHHHHHHhh--hCCCeEEEEeccHHHHHHHHHHHhhcCCeEEEEeCC--------CChHHHHHHHHHHhcC
Q psy2046 19 VVESGKLKKLDEILPDLK--KNGHRVLIFSQFIFVLDILGHYMDIRGWRHLRLDGA--------TQVSSRQELIDEYNRD 88 (138)
Q Consensus 19 ~~~s~K~~~l~~ll~~~~--~~~~k~iif~~~~~~~~~l~~~l~~~g~~~~~i~g~--------~~~~~R~~~~~~F~~~ 88 (138)
...++|+..|.++|.+.. ..+.++||||++..+++.|.+.|...|+++..++|. +++.+|.+++++|+++
T Consensus 343 ~~~~pK~~~L~~il~~~~~~~~~~kvlIF~~~~~t~~~L~~~L~~~~~~~~~~~g~~~~~~~~~~~~~~r~~~~~~F~~g 422 (773)
T PRK13766 343 DIEHPKLEKLREIVKEQLGKNPDSRIIVFTQYRDTAEKIVDLLEKEGIKAVRFVGQASKDGDKGMSQKEQIEILDKFRAG 422 (773)
T ss_pred ccCChHHHHHHHHHHHHHhcCCCCeEEEEeCcHHHHHHHHHHHHhCCCceEEEEccccccccCCCCHHHHHHHHHHHHcC
Confidence 345789999999998876 457899999999999999999999999999999987 8889999999999988
Q ss_pred CCceEEEEeccccccccCcCccCEEEEeCCCCCccchhHHHHHHhhcCC
Q psy2046 89 QDLFAFLLSTKAGGLGINLTAADTVIIHDVDFNPYNDKQAEDRCHRVGQ 137 (138)
Q Consensus 89 ~~~~vll~~~~~~~~Gl~l~~~~~vi~~~~~~~~~~~~Q~~gR~~R~GQ 137 (138)
+.. +|++|+++++|+|++.+++||+||++|++..++||+||++|.|+
T Consensus 423 ~~~--vLvaT~~~~eGldi~~~~~VI~yd~~~s~~r~iQR~GR~gR~~~ 469 (773)
T PRK13766 423 EFN--VLVSTSVAEEGLDIPSVDLVIFYEPVPSEIRSIQRKGRTGRQEE 469 (773)
T ss_pred CCC--EEEECChhhcCCCcccCCEEEEeCCCCCHHHHHHHhcccCcCCC
Confidence 543 67788999999999999999999999999999999999999764
No 33
>KOG0336|consensus
Probab=99.85 E-value=1.2e-21 Score=142.60 Aligned_cols=130 Identities=18% Similarity=0.245 Sum_probs=115.1
Q ss_pred ccccCCCCCCCcccccCchHHHHHHHHHHhhhCCCeEEEEeccHHHHHHHHHHHhhcCCeEEEEeCCCChHHHHHHHHHH
Q psy2046 6 TLDCAKYKVPDDLVVESGKLKKLDEILPDLKKNGHRVLIFSQFIFVLDILGHYMDIRGWRHLRLDGATQVSSRQELIDEY 85 (138)
Q Consensus 6 ~~~~~~~~~~~~~~~~s~K~~~l~~ll~~~~~~~~k~iif~~~~~~~~~l~~~l~~~g~~~~~i~g~~~~~~R~~~~~~F 85 (138)
+..++.+++..-+..++.|+..+..++..+ ...+|+|||+..+..+|.|+.-|.-.|+....+||..++.+|++.++.|
T Consensus 433 L~a~~sVkQ~i~v~~d~~k~~~~~~f~~~m-s~ndKvIiFv~~K~~AD~LSSd~~l~gi~~q~lHG~r~Q~DrE~al~~~ 511 (629)
T KOG0336|consen 433 LVAVKSVKQNIIVTTDSEKLEIVQFFVANM-SSNDKVIIFVSRKVMADHLSSDFCLKGISSQSLHGNREQSDREMALEDF 511 (629)
T ss_pred eeeeeeeeeeEEecccHHHHHHHHHHHHhc-CCCceEEEEEechhhhhhccchhhhcccchhhccCChhhhhHHHHHHhh
Confidence 455666777776677788998777777764 3456999999999999999999999999999999999999999999999
Q ss_pred hcCCCceEEEEeccccccccCcCccCEEEEeCCCCCccchhHHHHHHhhcCCC
Q psy2046 86 NRDQDLFAFLLSTKAGGLGINLTAADTVIIHDVDFNPYNDKQAEDRCHRVGQT 138 (138)
Q Consensus 86 ~~~~~~~vll~~~~~~~~Gl~l~~~~~vi~~~~~~~~~~~~Q~~gR~~R~GQt 138 (138)
+.|.. + +|++|+.+++|||+++..||++||+|.|-..|.+|+||++|.|.|
T Consensus 512 ksG~v-r-ILvaTDlaSRGlDv~DiTHV~NyDFP~nIeeYVHRvGrtGRaGr~ 562 (629)
T KOG0336|consen 512 KSGEV-R-ILVATDLASRGLDVPDITHVYNYDFPRNIEEYVHRVGRTGRAGRT 562 (629)
T ss_pred hcCce-E-EEEEechhhcCCCchhcceeeccCCCccHHHHHHHhcccccCCCC
Confidence 98854 3 788899999999999999999999999999999999999999975
No 34
>KOG0341|consensus
Probab=99.85 E-value=1.8e-21 Score=140.85 Aligned_cols=117 Identities=23% Similarity=0.313 Sum_probs=104.6
Q ss_pred cccccCchHHHHHHHHHHhhhCCCeEEEEeccHHHHHHHHHHHhhcCCeEEEEeCCCChHHHHHHHHHHhcCCCceEEEE
Q psy2046 17 DLVVESGKLKKLDEILPDLKKNGHRVLIFSQFIFVLDILGHYMDIRGWRHLRLDGATQVSSRQELIDEYNRDQDLFAFLL 96 (138)
Q Consensus 17 ~~~~~s~K~~~l~~ll~~~~~~~~k~iif~~~~~~~~~l~~~l~~~g~~~~~i~g~~~~~~R~~~~~~F~~~~~~~vll~ 96 (138)
+++.+.+|+-.|++- +.+...+++||+..+.+.|.+.++|--.|+.++.|||+..+++|...++.|+.++.. +|+
T Consensus 402 EyVkqEaKiVylLeC---LQKT~PpVLIFaEkK~DVD~IhEYLLlKGVEavaIHGGKDQedR~~ai~afr~gkKD--VLV 476 (610)
T KOG0341|consen 402 EYVKQEAKIVYLLEC---LQKTSPPVLIFAEKKADVDDIHEYLLLKGVEAVAIHGGKDQEDRHYAIEAFRAGKKD--VLV 476 (610)
T ss_pred HHHHhhhhhhhHHHH---hccCCCceEEEeccccChHHHHHHHHHccceeEEeecCcchhHHHHHHHHHhcCCCc--eEE
Confidence 445555665554444 466788999999999999999999999999999999999999999999999998876 888
Q ss_pred eccccccccCcCccCEEEEeCCCCCccchhHHHHHHhhcCCC
Q psy2046 97 STKAGGLGINLTAADTVIIHDVDFNPYNDKQAEDRCHRVGQT 138 (138)
Q Consensus 97 ~~~~~~~Gl~l~~~~~vi~~~~~~~~~~~~Q~~gR~~R~GQt 138 (138)
.|++++.|||+|+..|||+||+|-.-.+|.+||||.+|.|.|
T Consensus 477 ATDVASKGLDFp~iqHVINyDMP~eIENYVHRIGRTGRsg~~ 518 (610)
T KOG0341|consen 477 ATDVASKGLDFPDIQHVINYDMPEEIENYVHRIGRTGRSGKT 518 (610)
T ss_pred EecchhccCCCccchhhccCCChHHHHHHHHHhcccCCCCCc
Confidence 999999999999999999999999999999999999999965
No 35
>TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.84 E-value=1.3e-20 Score=143.09 Aligned_cols=111 Identities=19% Similarity=0.198 Sum_probs=97.2
Q ss_pred HHHHHHHHHHhhhCCCeEEEEeccHHHHHHHHHHHhhcCCeEEEEeCCCChHHHHHHHHHHhcCCCceEEEEeccccccc
Q psy2046 25 LKKLDEILPDLKKNGHRVLIFSQFIFVLDILGHYMDIRGWRHLRLDGATQVSSRQELIDEYNRDQDLFAFLLSTKAGGLG 104 (138)
Q Consensus 25 ~~~l~~ll~~~~~~~~k~iif~~~~~~~~~l~~~l~~~g~~~~~i~g~~~~~~R~~~~~~F~~~~~~~vll~~~~~~~~G 104 (138)
+..+.+++.. ...+.++||||++.+.++.+...|...|+++..+||++++.+|.++++.|++++.. +|++|+++++|
T Consensus 213 ~~~l~~~l~~-~~~~~~~IIF~~s~~~~e~la~~L~~~g~~~~~~H~~l~~~eR~~i~~~F~~g~~~--vLVaT~~~~~G 289 (470)
T TIGR00614 213 LEDLLRFIRK-EFKGKSGIIYCPSRKKSEQVTASLQNLGIAAGAYHAGLEISARDDVHHKFQRDEIQ--VVVATVAFGMG 289 (470)
T ss_pred HHHHHHHHHH-hcCCCceEEEECcHHHHHHHHHHHHhcCCCeeEeeCCCCHHHHHHHHHHHHcCCCc--EEEEechhhcc
Confidence 3344444432 22456779999999999999999999999999999999999999999999987654 77889999999
Q ss_pred cCcCccCEEEEeCCCCCccchhHHHHHHhhcCCC
Q psy2046 105 INLTAADTVIIHDVDFNPYNDKQAEDRCHRVGQT 138 (138)
Q Consensus 105 l~l~~~~~vi~~~~~~~~~~~~Q~~gR~~R~GQt 138 (138)
+|++++++||++++|.+...|.|++||++|.|+.
T Consensus 290 ID~p~V~~VI~~~~P~s~~~y~Qr~GRaGR~G~~ 323 (470)
T TIGR00614 290 INKPDVRFVIHYSLPKSMESYYQESGRAGRDGLP 323 (470)
T ss_pred CCcccceEEEEeCCCCCHHHHHhhhcCcCCCCCC
Confidence 9999999999999999999999999999999963
No 36
>KOG0335|consensus
Probab=99.84 E-value=6.7e-21 Score=141.40 Aligned_cols=124 Identities=19% Similarity=0.276 Sum_probs=111.1
Q ss_pred CCCCcccccCchHHHHHHHHHHhhh---CC----CeEEEEeccHHHHHHHHHHHhhcCCeEEEEeCCCChHHHHHHHHHH
Q psy2046 13 KVPDDLVVESGKLKKLDEILPDLKK---NG----HRVLIFSQFIFVLDILGHYMDIRGWRHLRLDGATQVSSRQELIDEY 85 (138)
Q Consensus 13 ~~~~~~~~~s~K~~~l~~ll~~~~~---~~----~k~iif~~~~~~~~~l~~~l~~~g~~~~~i~g~~~~~~R~~~~~~F 85 (138)
.+....+.+..|...|++++..... ++ ++++||+..++.++.++.+|...++++..|||..++.+|++.++.|
T Consensus 304 ~q~i~~V~~~~kr~~Lldll~~~~~~~~~~~~~~e~tlvFvEt~~~~d~l~~~l~~~~~~~~sIhg~~tq~er~~al~~F 383 (482)
T KOG0335|consen 304 TQKILFVNEMEKRSKLLDLLNKDDGPPSDGEPKWEKTLVFVETKRGADELAAFLSSNGYPAKSIHGDRTQIEREQALNDF 383 (482)
T ss_pred eeEeeeecchhhHHHHHHHhhcccCCcccCCcccceEEEEeeccchhhHHHHHHhcCCCCceeecchhhhhHHHHHHHHh
Confidence 3444566778899999999875431 11 4899999999999999999999999999999999999999999999
Q ss_pred hcCCCceEEEEeccccccccCcCccCEEEEeCCCCCccchhHHHHHHhhcCCC
Q psy2046 86 NRDQDLFAFLLSTKAGGLGINLTAADTVIIHDVDFNPYNDKQAEDRCHRVGQT 138 (138)
Q Consensus 86 ~~~~~~~vll~~~~~~~~Gl~l~~~~~vi~~~~~~~~~~~~Q~~gR~~R~GQt 138 (138)
++++.+ ++++|+++++|||++++.|||+||+|-+..+|.+||||++|.|++
T Consensus 384 r~g~~p--vlVaT~VaaRGlDi~~V~hVInyDmP~d~d~YvHRIGRTGR~Gn~ 434 (482)
T KOG0335|consen 384 RNGKAP--VLVATNVAARGLDIPNVKHVINYDMPADIDDYVHRIGRTGRVGNG 434 (482)
T ss_pred hcCCcc--eEEEehhhhcCCCCCCCceeEEeecCcchhhHHHhccccccCCCC
Confidence 999877 888999999999999999999999999999999999999999974
No 37
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=99.83 E-value=3.7e-20 Score=144.27 Aligned_cols=112 Identities=15% Similarity=0.226 Sum_probs=101.7
Q ss_pred chHHHHHHHHHHhhhCCCeEEEEeccHHHHHHHHHHHhhcCCeEEEEeCCCChHHHHHHHHHHhcCCCceEEEEeccccc
Q psy2046 23 GKLKKLDEILPDLKKNGHRVLIFSQFIFVLDILGHYMDIRGWRHLRLDGATQVSSRQELIDEYNRDQDLFAFLLSTKAGG 102 (138)
Q Consensus 23 ~K~~~l~~ll~~~~~~~~k~iif~~~~~~~~~l~~~l~~~g~~~~~i~g~~~~~~R~~~~~~F~~~~~~~vll~~~~~~~ 102 (138)
.|...+..++.. ....++||||++...++.|...|...|+.+..+||.+++.+|.+++++|++++.. +|++|++++
T Consensus 231 ~k~~~L~~~L~~--~~~~~~IVF~~tk~~a~~l~~~L~~~g~~~~~lhgd~~q~~R~~il~~Fr~G~~~--ILVATdv~a 306 (629)
T PRK11634 231 RKNEALVRFLEA--EDFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLD--ILIATDVAA 306 (629)
T ss_pred hHHHHHHHHHHh--cCCCCEEEEeccHHHHHHHHHHHHhCCCCEEEeeCCCCHHHHHHHHHHHhCCCCC--EEEEcchHh
Confidence 577777777753 3456899999999999999999999999999999999999999999999988654 888999999
Q ss_pred cccCcCccCEEEEeCCCCCccchhHHHHHHhhcCCC
Q psy2046 103 LGINLTAADTVIIHDVDFNPYNDKQAEDRCHRVGQT 138 (138)
Q Consensus 103 ~Gl~l~~~~~vi~~~~~~~~~~~~Q~~gR~~R~GQt 138 (138)
+|+|++++++||+||+|.++..|.||+||++|.|.+
T Consensus 307 rGIDip~V~~VI~~d~P~~~e~yvqRiGRtGRaGr~ 342 (629)
T PRK11634 307 RGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRA 342 (629)
T ss_pred cCCCcccCCEEEEeCCCCCHHHHHHHhccccCCCCc
Confidence 999999999999999999999999999999999863
No 38
>PRK11057 ATP-dependent DNA helicase RecQ; Provisional
Probab=99.83 E-value=6.3e-20 Score=142.90 Aligned_cols=111 Identities=20% Similarity=0.242 Sum_probs=98.3
Q ss_pred chHHHHHHHHHHhhhCCCeEEEEeccHHHHHHHHHHHhhcCCeEEEEeCCCChHHHHHHHHHHhcCCCceEEEEeccccc
Q psy2046 23 GKLKKLDEILPDLKKNGHRVLIFSQFIFVLDILGHYMDIRGWRHLRLDGATQVSSRQELIDEYNRDQDLFAFLLSTKAGG 102 (138)
Q Consensus 23 ~K~~~l~~ll~~~~~~~~k~iif~~~~~~~~~l~~~l~~~g~~~~~i~g~~~~~~R~~~~~~F~~~~~~~vll~~~~~~~ 102 (138)
.++..+...+. ...+.++||||+++..++.+...|...|+++..+||++++++|.++++.|+.+... +|++|++++
T Consensus 222 ~~~~~l~~~l~--~~~~~~~IIFc~tr~~~e~la~~L~~~g~~v~~~Ha~l~~~~R~~i~~~F~~g~~~--VLVaT~a~~ 297 (607)
T PRK11057 222 KPLDQLMRYVQ--EQRGKSGIIYCNSRAKVEDTAARLQSRGISAAAYHAGLDNDVRADVQEAFQRDDLQ--IVVATVAFG 297 (607)
T ss_pred chHHHHHHHHH--hcCCCCEEEEECcHHHHHHHHHHHHhCCCCEEEecCCCCHHHHHHHHHHHHCCCCC--EEEEechhh
Confidence 34444444443 23467999999999999999999999999999999999999999999999987654 778899999
Q ss_pred cccCcCccCEEEEeCCCCCccchhHHHHHHhhcCC
Q psy2046 103 LGINLTAADTVIIHDVDFNPYNDKQAEDRCHRVGQ 137 (138)
Q Consensus 103 ~Gl~l~~~~~vi~~~~~~~~~~~~Q~~gR~~R~GQ 137 (138)
+|+|++++++||++++|.+...|.|++||++|.|.
T Consensus 298 ~GIDip~V~~VI~~d~P~s~~~y~Qr~GRaGR~G~ 332 (607)
T PRK11057 298 MGINKPNVRFVVHFDIPRNIESYYQETGRAGRDGL 332 (607)
T ss_pred ccCCCCCcCEEEEeCCCCCHHHHHHHhhhccCCCC
Confidence 99999999999999999999999999999999985
No 39
>smart00490 HELICc helicase superfamily c-terminal domain.
Probab=99.82 E-value=5.7e-20 Score=107.80 Aligned_cols=81 Identities=27% Similarity=0.445 Sum_probs=75.1
Q ss_pred HHHHHHhhcCCeEEEEeCCCChHHHHHHHHHHhcCCCceEEEEeccccccccCcCccCEEEEeCCCCCccchhHHHHHHh
Q psy2046 54 ILGHYMDIRGWRHLRLDGATQVSSRQELIDEYNRDQDLFAFLLSTKAGGLGINLTAADTVIIHDVDFNPYNDKQAEDRCH 133 (138)
Q Consensus 54 ~l~~~l~~~g~~~~~i~g~~~~~~R~~~~~~F~~~~~~~vll~~~~~~~~Gl~l~~~~~vi~~~~~~~~~~~~Q~~gR~~ 133 (138)
.+.+.|...++++..+||+++..+|..+++.|++++. .+|++|+++++|+|++.+++||+++++|++..+.|++||++
T Consensus 2 ~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~--~vli~t~~~~~Gi~~~~~~~vi~~~~~~~~~~~~Q~~gR~~ 79 (82)
T smart00490 2 ELAELLKELGIKVARLHGGLSQEEREEILEKFNNGKI--KVLVATDVAERGLDLPGVDLVIIYDLPWSPASYIQRIGRAG 79 (82)
T ss_pred HHHHHHHHCCCeEEEEECCCCHHHHHHHHHHHHcCCC--eEEEECChhhCCcChhcCCEEEEeCCCCCHHHHHHhhcccc
Confidence 4677888889999999999999999999999998765 48889999999999999999999999999999999999999
Q ss_pred hcC
Q psy2046 134 RVG 136 (138)
Q Consensus 134 R~G 136 (138)
|.|
T Consensus 80 R~g 82 (82)
T smart00490 80 RAG 82 (82)
T ss_pred cCC
Confidence 987
No 40
>TIGR01389 recQ ATP-dependent DNA helicase RecQ. The ATP-dependent DNA helicase RecQ of E. coli is about 600 residues long. This model represents bacterial proteins with a high degree of similarity in domain architecture and in primary sequence to E. coli RecQ. The model excludes eukaryotic and archaeal proteins with RecQ-like regions, as well as more distantly related bacterial helicases related to RecQ.
Probab=99.82 E-value=1.7e-19 Score=140.18 Aligned_cols=113 Identities=22% Similarity=0.223 Sum_probs=101.0
Q ss_pred cCchHHHHHHHHHHhhhCCCeEEEEeccHHHHHHHHHHHhhcCCeEEEEeCCCChHHHHHHHHHHhcCCCceEEEEeccc
Q psy2046 21 ESGKLKKLDEILPDLKKNGHRVLIFSQFIFVLDILGHYMDIRGWRHLRLDGATQVSSRQELIDEYNRDQDLFAFLLSTKA 100 (138)
Q Consensus 21 ~s~K~~~l~~ll~~~~~~~~k~iif~~~~~~~~~l~~~l~~~g~~~~~i~g~~~~~~R~~~~~~F~~~~~~~vll~~~~~ 100 (138)
...+...+.+.+... .+.+.||||++...++.+++.|...|+++..+||+++.++|..+++.|..++.. +|++|++
T Consensus 208 ~~~~~~~l~~~l~~~--~~~~~IIf~~sr~~~e~la~~L~~~g~~~~~~H~~l~~~~R~~i~~~F~~g~~~--vlVaT~a 283 (591)
T TIGR01389 208 KNNKQKFLLDYLKKH--RGQSGIIYASSRKKVEELAERLESQGISALAYHAGLSNKVRAENQEDFLYDDVK--VMVATNA 283 (591)
T ss_pred CCCHHHHHHHHHHhc--CCCCEEEEECcHHHHHHHHHHHHhCCCCEEEEECCCCHHHHHHHHHHHHcCCCc--EEEEech
Confidence 345666666666532 367899999999999999999999999999999999999999999999988643 7888999
Q ss_pred cccccCcCccCEEEEeCCCCCccchhHHHHHHhhcCC
Q psy2046 101 GGLGINLTAADTVIIHDVDFNPYNDKQAEDRCHRVGQ 137 (138)
Q Consensus 101 ~~~Gl~l~~~~~vi~~~~~~~~~~~~Q~~gR~~R~GQ 137 (138)
.++|+|+++++.||++++|.+...|.|++||++|.|+
T Consensus 284 ~~~GID~p~v~~VI~~~~p~s~~~y~Q~~GRaGR~G~ 320 (591)
T TIGR01389 284 FGMGIDKPNVRFVIHYDMPGNLESYYQEAGRAGRDGL 320 (591)
T ss_pred hhccCcCCCCCEEEEcCCCCCHHHHhhhhccccCCCC
Confidence 9999999999999999999999999999999999996
No 41
>KOG0326|consensus
Probab=99.82 E-value=1.2e-20 Score=133.54 Aligned_cols=127 Identities=19% Similarity=0.236 Sum_probs=115.1
Q ss_pred cccCCCCCCCcccccCchHHHHHHHHHHhhhCCCeEEEEeccHHHHHHHHHHHhhcCCeEEEEeCCCChHHHHHHHHHHh
Q psy2046 7 LDCAKYKVPDDLVVESGKLKKLDEILPDLKKNGHRVLIFSQFIFVLDILGHYMDIRGWRHLRLDGATQVSSRQELIDEYN 86 (138)
Q Consensus 7 ~~~~~~~~~~~~~~~s~K~~~l~~ll~~~~~~~~k~iif~~~~~~~~~l~~~l~~~g~~~~~i~g~~~~~~R~~~~~~F~ 86 (138)
+....+.++-.++.++.|+..|..+...+.-+ +.||||++....+.|+..+.+.|+++..+|+.|.++.|.+++..|+
T Consensus 292 Ltl~GvtQyYafV~e~qKvhCLntLfskLqIN--QsIIFCNS~~rVELLAkKITelGyscyyiHakM~Q~hRNrVFHdFr 369 (459)
T KOG0326|consen 292 LTLKGVTQYYAFVEERQKVHCLNTLFSKLQIN--QSIIFCNSTNRVELLAKKITELGYSCYYIHAKMAQEHRNRVFHDFR 369 (459)
T ss_pred hhhcchhhheeeechhhhhhhHHHHHHHhccc--ceEEEeccchHhHHHHHHHHhccchhhHHHHHHHHhhhhhhhhhhh
Confidence 34455667778889999999999999876443 7899999999999999999999999999999999999999999999
Q ss_pred cCCCceEEEEeccccccccCcCccCEEEEeCCCCCccchhHHHHHHhhcCC
Q psy2046 87 RDQDLFAFLLSTKAGGLGINLTAADTVIIHDVDFNPYNDKQAEDRCHRVGQ 137 (138)
Q Consensus 87 ~~~~~~vll~~~~~~~~Gl~l~~~~~vi~~~~~~~~~~~~Q~~gR~~R~GQ 137 (138)
+|... .|++++..-+|+|++..|.||+||+|-+++.|.+|+||.||.|.
T Consensus 370 ~G~cr--nLVctDL~TRGIDiqavNvVINFDfpk~aEtYLHRIGRsGRFGh 418 (459)
T KOG0326|consen 370 NGKCR--NLVCTDLFTRGIDIQAVNVVINFDFPKNAETYLHRIGRSGRFGH 418 (459)
T ss_pred ccccc--eeeehhhhhcccccceeeEEEecCCCCCHHHHHHHccCCccCCC
Confidence 98644 78889999999999999999999999999999999999999995
No 42
>TIGR00603 rad25 DNA repair helicase rad25. All proteins in this family for which functions are known are DNA-DNA helicases used for the initiation of nucleotide excision repair and transacription as part of the TFIIH complex.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.81 E-value=1.9e-19 Score=140.81 Aligned_cols=113 Identities=17% Similarity=0.335 Sum_probs=96.3
Q ss_pred cccCchHHHHHHHHHHhhhCCCeEEEEeccHHHHHHHHHHHhhcCCeEEEEeCCCChHHHHHHHHHHhcCCCceEEEEec
Q psy2046 19 VVESGKLKKLDEILPDLKKNGHRVLIFSQFIFVLDILGHYMDIRGWRHLRLDGATQVSSRQELIDEYNRDQDLFAFLLST 98 (138)
Q Consensus 19 ~~~s~K~~~l~~ll~~~~~~~~k~iif~~~~~~~~~l~~~l~~~g~~~~~i~g~~~~~~R~~~~~~F~~~~~~~vll~~~ 98 (138)
.+.+.|+..+..++......++|+||||++...++.+...|. ...++|++++.+|.+++++|++++...+++ .+
T Consensus 476 ~~np~K~~~~~~Li~~he~~g~kiLVF~~~~~~l~~~a~~L~-----~~~I~G~ts~~ER~~il~~Fr~~~~i~vLv-~S 549 (732)
T TIGR00603 476 VMNPNKFRACQFLIRFHEQRGDKIIVFSDNVFALKEYAIKLG-----KPFIYGPTSQQERMQILQNFQHNPKVNTIF-LS 549 (732)
T ss_pred hhChHHHHHHHHHHHHHhhcCCeEEEEeCCHHHHHHHHHHcC-----CceEECCCCHHHHHHHHHHHHhCCCccEEE-Ee
Confidence 345678888888887655578899999999998888888773 346899999999999999999765555455 45
Q ss_pred cccccccCcCccCEEEEeCCCC-CccchhHHHHHHhhcCC
Q psy2046 99 KAGGLGINLTAADTVIIHDVDF-NPYNDKQAEDRCHRVGQ 137 (138)
Q Consensus 99 ~~~~~Gl~l~~~~~vi~~~~~~-~~~~~~Q~~gR~~R~GQ 137 (138)
+++++|+|+|+|++||++++++ ++.+|.||.||+.|.+.
T Consensus 550 kVgdeGIDlP~a~vvI~~s~~~gS~~q~iQRlGRilR~~~ 589 (732)
T TIGR00603 550 KVGDTSIDLPEANVLIQISSHYGSRRQEAQRLGRILRAKK 589 (732)
T ss_pred cccccccCCCCCCEEEEeCCCCCCHHHHHHHhcccccCCC
Confidence 9999999999999999999986 89999999999999974
No 43
>COG1111 MPH1 ERCC4-like helicases [DNA replication, recombination, and repair]
Probab=99.81 E-value=2e-19 Score=133.47 Aligned_cols=115 Identities=24% Similarity=0.377 Sum_probs=102.5
Q ss_pred cccCchHHHHHHHHHHhh--hCCCeEEEEeccHHHHHHHHHHHhhcCCeEE-EEeC--------CCChHHHHHHHHHHhc
Q psy2046 19 VVESGKLKKLDEILPDLK--KNGHRVLIFSQFIFVLDILGHYMDIRGWRHL-RLDG--------ATQVSSRQELIDEYNR 87 (138)
Q Consensus 19 ~~~s~K~~~l~~ll~~~~--~~~~k~iif~~~~~~~~~l~~~l~~~g~~~~-~i~g--------~~~~~~R~~~~~~F~~ 87 (138)
-..+||+..+.+++++.. ..+.++|||++++++++.|.++|.+.|.... .+-| +|++.+..+++++|+.
T Consensus 344 ~v~HPKl~~l~eilke~~~k~~~~RvIVFT~yRdTae~i~~~L~~~~~~~~~rFiGQa~r~~~~GMsQkeQ~eiI~~Fr~ 423 (542)
T COG1111 344 GVEHPKLEKLREILKEQLEKNGDSRVIVFTEYRDTAEEIVNFLKKIGIKARVRFIGQASREGDKGMSQKEQKEIIDQFRK 423 (542)
T ss_pred cCCCccHHHHHHHHHHHHhcCCCceEEEEehhHhHHHHHHHHHHhcCCcceeEEeeccccccccccCHHHHHHHHHHHhc
Confidence 446789999999999876 4468999999999999999999999988764 4444 4999999999999999
Q ss_pred CCCceEEEEeccccccccCcCccCEEEEeCCCCCccchhHHHHHHhhc
Q psy2046 88 DQDLFAFLLSTKAGGLGINLTAADTVIIHDVDFNPYNDKQAEDRCHRV 135 (138)
Q Consensus 88 ~~~~~vll~~~~~~~~Gl~l~~~~~vi~~~~~~~~~~~~Q~~gR~~R~ 135 (138)
|... +|++|++|.+|||+|..+.||+|+|.-++-..+||.||+||-
T Consensus 424 Ge~n--VLVaTSVgEEGLDIp~vDlVifYEpvpSeIR~IQR~GRTGR~ 469 (542)
T COG1111 424 GEYN--VLVATSVGEEGLDIPEVDLVIFYEPVPSEIRSIQRKGRTGRK 469 (542)
T ss_pred CCce--EEEEcccccccCCCCcccEEEEecCCcHHHHHHHhhCccccC
Confidence 8654 788999999999999999999999999999999999999985
No 44
>PTZ00424 helicase 45; Provisional
Probab=99.81 E-value=2.2e-19 Score=133.66 Aligned_cols=110 Identities=20% Similarity=0.266 Sum_probs=97.2
Q ss_pred hHHHHHHHHHHhhhCCCeEEEEeccHHHHHHHHHHHhhcCCeEEEEeCCCChHHHHHHHHHHhcCCCceEEEEecccccc
Q psy2046 24 KLKKLDEILPDLKKNGHRVLIFSQFIFVLDILGHYMDIRGWRHLRLDGATQVSSRQELIDEYNRDQDLFAFLLSTKAGGL 103 (138)
Q Consensus 24 K~~~l~~ll~~~~~~~~k~iif~~~~~~~~~l~~~l~~~g~~~~~i~g~~~~~~R~~~~~~F~~~~~~~vll~~~~~~~~ 103 (138)
|...+.+++.. ....++|||+++...++.+...|...++.+..+||++++.+|..++++|++++.. +|++|+++++
T Consensus 254 ~~~~l~~~~~~--~~~~~~ivF~~t~~~~~~l~~~l~~~~~~~~~~h~~~~~~~R~~i~~~f~~g~~~--vLvaT~~l~~ 329 (401)
T PTZ00424 254 KFDTLCDLYET--LTITQAIIYCNTRRKVDYLTKKMHERDFTVSCMHGDMDQKDRDLIMREFRSGSTR--VLITTDLLAR 329 (401)
T ss_pred HHHHHHHHHHh--cCCCeEEEEecCcHHHHHHHHHHHHCCCcEEEEeCCCCHHHHHHHHHHHHcCCCC--EEEEcccccC
Confidence 44444544432 2346899999999999999999999999999999999999999999999988654 7889999999
Q ss_pred ccCcCccCEEEEeCCCCCccchhHHHHHHhhcCC
Q psy2046 104 GINLTAADTVIIHDVDFNPYNDKQAEDRCHRVGQ 137 (138)
Q Consensus 104 Gl~l~~~~~vi~~~~~~~~~~~~Q~~gR~~R~GQ 137 (138)
|+|++++++||++++|.+...|.|++||++|.|.
T Consensus 330 GiDip~v~~VI~~~~p~s~~~y~qr~GRagR~g~ 363 (401)
T PTZ00424 330 GIDVQQVSLVINYDLPASPENYIHRIGRSGRFGR 363 (401)
T ss_pred CcCcccCCEEEEECCCCCHHHEeecccccccCCC
Confidence 9999999999999999999999999999999885
No 45
>KOG0342|consensus
Probab=99.81 E-value=1.1e-19 Score=134.32 Aligned_cols=113 Identities=16% Similarity=0.246 Sum_probs=101.8
Q ss_pred CchHHHHHHHHHHhhhCCCeEEEEeccHHHHHHHHHHHhhcCCeEEEEeCCCChHHHHHHHHHHhcCCCceEEEEecccc
Q psy2046 22 SGKLKKLDEILPDLKKNGHRVLIFSQFIFVLDILGHYMDIRGWRHLRLDGATQVSSRQELIDEYNRDQDLFAFLLSTKAG 101 (138)
Q Consensus 22 s~K~~~l~~ll~~~~~~~~k~iif~~~~~~~~~l~~~l~~~g~~~~~i~g~~~~~~R~~~~~~F~~~~~~~vll~~~~~~ 101 (138)
..++..+..+|+.... ..|+|||+.+..+...+.+.|+...+++..|||+.++..|.....+|+..+.. +|+||+++
T Consensus 314 ~~~f~ll~~~LKk~~~-~~KiiVF~sT~~~vk~~~~lL~~~dlpv~eiHgk~~Q~kRT~~~~~F~kaesg--IL~cTDVa 390 (543)
T KOG0342|consen 314 DSRFSLLYTFLKKNIK-RYKIIVFFSTCMSVKFHAELLNYIDLPVLEIHGKQKQNKRTSTFFEFCKAESG--ILVCTDVA 390 (543)
T ss_pred cchHHHHHHHHHHhcC-CceEEEEechhhHHHHHHHHHhhcCCchhhhhcCCcccccchHHHHHhhcccc--eEEecchh
Confidence 3456677777765433 27999999999999999999999999999999999999999999999988765 89999999
Q ss_pred ccccCcCccCEEEEeCCCCCccchhHHHHHHhhcCC
Q psy2046 102 GLGINLTAADTVIIHDVDFNPYNDKQAEDRCHRVGQ 137 (138)
Q Consensus 102 ~~Gl~l~~~~~vi~~~~~~~~~~~~Q~~gR~~R~GQ 137 (138)
++|+|+|+++.||.|++|-++.+|+||+||.+|-|-
T Consensus 391 ARGlD~P~V~~VvQ~~~P~d~~~YIHRvGRTaR~gk 426 (543)
T KOG0342|consen 391 ARGLDIPDVDWVVQYDPPSDPEQYIHRVGRTAREGK 426 (543)
T ss_pred hccCCCCCceEEEEeCCCCCHHHHHHHhccccccCC
Confidence 999999999999999999999999999999999874
No 46
>PLN03137 ATP-dependent DNA helicase; Q4-like; Provisional
Probab=99.81 E-value=2.8e-19 Score=143.90 Aligned_cols=98 Identities=19% Similarity=0.193 Sum_probs=92.4
Q ss_pred CCeEEEEeccHHHHHHHHHHHhhcCCeEEEEeCCCChHHHHHHHHHHhcCCCceEEEEeccccccccCcCccCEEEEeCC
Q psy2046 39 GHRVLIFSQFIFVLDILGHYMDIRGWRHLRLDGATQVSSRQELIDEYNRDQDLFAFLLSTKAGGLGINLTAADTVIIHDV 118 (138)
Q Consensus 39 ~~k~iif~~~~~~~~~l~~~l~~~g~~~~~i~g~~~~~~R~~~~~~F~~~~~~~vll~~~~~~~~Gl~l~~~~~vi~~~~ 118 (138)
+++.||||.++..++.++..|...|+++..+||++++.+|..++++|..++.. +|++|.++|+|||+++++.||++++
T Consensus 680 ~esgIIYC~SRke~E~LAe~L~~~Gika~~YHAGLs~eeR~~vqe~F~~Gei~--VLVATdAFGMGIDkPDVR~VIHydl 757 (1195)
T PLN03137 680 DECGIIYCLSRMDCEKVAERLQEFGHKAAFYHGSMDPAQRAFVQKQWSKDEIN--IICATVAFGMGINKPDVRFVIHHSL 757 (1195)
T ss_pred CCCceeEeCchhHHHHHHHHHHHCCCCeeeeeCCCCHHHHHHHHHHHhcCCCc--EEEEechhhcCCCccCCcEEEEcCC
Confidence 56899999999999999999999999999999999999999999999988654 7788999999999999999999999
Q ss_pred CCCccchhHHHHHHhhcCCC
Q psy2046 119 DFNPYNDKQAEDRCHRVGQT 138 (138)
Q Consensus 119 ~~~~~~~~Q~~gR~~R~GQt 138 (138)
|.+...|.|++||+||.|+.
T Consensus 758 PkSiEsYyQriGRAGRDG~~ 777 (1195)
T PLN03137 758 PKSIEGYHQECGRAGRDGQR 777 (1195)
T ss_pred CCCHHHHHhhhcccCCCCCC
Confidence 99999999999999999963
No 47
>KOG0332|consensus
Probab=99.79 E-value=6.4e-19 Score=126.85 Aligned_cols=116 Identities=20% Similarity=0.240 Sum_probs=100.7
Q ss_pred cccCchHHHHHHHHHHhhhCCCeEEEEeccHHHHHHHHHHHhhcCCeEEEEeCCCChHHHHHHHHHHhcCCCceEEEEec
Q psy2046 19 VVESGKLKKLDEILPDLKKNGHRVLIFSQFIFVLDILGHYMDIRGWRHLRLDGATQVSSRQELIDEYNRDQDLFAFLLST 98 (138)
Q Consensus 19 ~~~s~K~~~l~~ll~~~~~~~~k~iif~~~~~~~~~l~~~l~~~g~~~~~i~g~~~~~~R~~~~~~F~~~~~~~vll~~~ 98 (138)
.....|..++.++..-+ .-.+.||||+.+..+.+|...+...|..+..+||.+...+|..+++.|+.|..- +|++|
T Consensus 312 ~~~~~K~~~l~~lyg~~--tigqsiIFc~tk~ta~~l~~~m~~~Gh~V~~l~G~l~~~~R~~ii~~Fr~g~~k--VLitT 387 (477)
T KOG0332|consen 312 ACRDDKYQALVNLYGLL--TIGQSIIFCHTKATAMWLYEEMRAEGHQVSLLHGDLTVEQRAAIIDRFREGKEK--VLITT 387 (477)
T ss_pred cchhhHHHHHHHHHhhh--hhhheEEEEeehhhHHHHHHHHHhcCceeEEeeccchhHHHHHHHHHHhcCcce--EEEEe
Confidence 34457888888854322 223789999999999999999999999999999999999999999999998764 78899
Q ss_pred cccccccCcCccCEEEEeCCCC------CccchhHHHHHHhhcCCC
Q psy2046 99 KAGGLGINLTAADTVIIHDVDF------NPYNDKQAEDRCHRVGQT 138 (138)
Q Consensus 99 ~~~~~Gl~l~~~~~vi~~~~~~------~~~~~~Q~~gR~~R~GQt 138 (138)
++.++|+|.+.++.||+||.|- ++..|.||+||+||.|.+
T Consensus 388 nV~ARGiDv~qVs~VvNydlP~~~~~~pD~etYlHRiGRtGRFGkk 433 (477)
T KOG0332|consen 388 NVCARGIDVAQVSVVVNYDLPVKYTGEPDYETYLHRIGRTGRFGKK 433 (477)
T ss_pred chhhcccccceEEEEEecCCccccCCCCCHHHHHHHhccccccccc
Confidence 9999999999999999999884 456889999999999964
No 48
>TIGR03817 DECH_helic helicase/secretion neighborhood putative DEAH-box helicase. A conserved gene neighborhood widely spread in the Actinobacteria contains this uncharacterized DEAH-box family helicase encoded convergently towards an operon of genes for protein homologous to type II secretion and pilus formation proteins. The context suggests that this helicase may play a role in conjugal transfer of DNA.
Probab=99.79 E-value=9.3e-19 Score=138.69 Aligned_cols=109 Identities=22% Similarity=0.201 Sum_probs=95.8
Q ss_pred HHHHHHHhhhCCCeEEEEeccHHHHHHHHHHHhhc--------CCeEEEEeCCCChHHHHHHHHHHhcCCCceEEEEecc
Q psy2046 28 LDEILPDLKKNGHRVLIFSQFIFVLDILGHYMDIR--------GWRHLRLDGATQVSSRQELIDEYNRDQDLFAFLLSTK 99 (138)
Q Consensus 28 l~~ll~~~~~~~~k~iif~~~~~~~~~l~~~l~~~--------g~~~~~i~g~~~~~~R~~~~~~F~~~~~~~vll~~~~ 99 (138)
..+++..+...+.++|||++++...+.+...|+.. +..+..+||++++++|.++.++|++|+.. +|++|+
T Consensus 260 ~~~~l~~l~~~~~~~IVF~~sr~~ae~l~~~l~~~l~~~~~~l~~~v~~~hgg~~~~eR~~ie~~f~~G~i~--vLVaTd 337 (742)
T TIGR03817 260 AADLLADLVAEGARTLTFVRSRRGAELVAAIARRLLGEVDPDLAERVAAYRAGYLPEDRRELERALRDGELL--GVATTN 337 (742)
T ss_pred HHHHHHHHHHCCCCEEEEcCCHHHHHHHHHHHHHHHHhhccccccchhheecCCCHHHHHHHHHHHHcCCce--EEEECc
Confidence 34455555556789999999999999999988764 56778999999999999999999998654 788999
Q ss_pred ccccccCcCccCEEEEeCCCCCccchhHHHHHHhhcCCC
Q psy2046 100 AGGLGINLTAADTVIIHDVDFNPYNDKQAEDRCHRVGQT 138 (138)
Q Consensus 100 ~~~~Gl~l~~~~~vi~~~~~~~~~~~~Q~~gR~~R~GQt 138 (138)
++++|+|+++.++||+++.|-+...|.||+||++|.|++
T Consensus 338 ~lerGIDI~~vd~VI~~~~P~s~~~y~qRiGRaGR~G~~ 376 (742)
T TIGR03817 338 ALELGVDISGLDAVVIAGFPGTRASLWQQAGRAGRRGQG 376 (742)
T ss_pred hHhccCCcccccEEEEeCCCCCHHHHHHhccccCCCCCC
Confidence 999999999999999999999999999999999999974
No 49
>KOG0340|consensus
Probab=99.78 E-value=1.4e-18 Score=124.41 Aligned_cols=116 Identities=17% Similarity=0.264 Sum_probs=105.1
Q ss_pred ccCchHHHHHHHHHHhhh-CCCeEEEEeccHHHHHHHHHHHhhcCCeEEEEeCCCChHHHHHHHHHHhcCCCceEEEEec
Q psy2046 20 VESGKLKKLDEILPDLKK-NGHRVLIFSQFIFVLDILGHYMDIRGWRHLRLDGATQVSSRQELIDEYNRDQDLFAFLLST 98 (138)
Q Consensus 20 ~~s~K~~~l~~ll~~~~~-~~~k~iif~~~~~~~~~l~~~l~~~g~~~~~i~g~~~~~~R~~~~~~F~~~~~~~vll~~~ 98 (138)
....|-..+..+|.+..+ +...++||++.......|...|+..++....+||-+++.+|...+.+|+.+... +|++|
T Consensus 234 ~~~vkdaYLv~~Lr~~~~~~~~simIFvnttr~cQ~l~~~l~~le~r~~~lHs~m~Q~eR~~aLsrFrs~~~~--iliaT 311 (442)
T KOG0340|consen 234 SIDVKDAYLVHLLRDFENKENGSIMIFVNTTRECQLLSMTLKNLEVRVVSLHSQMPQKERLAALSRFRSNAAR--ILIAT 311 (442)
T ss_pred chhhhHHHHHHHHhhhhhccCceEEEEeehhHHHHHHHHHHhhhceeeeehhhcchHHHHHHHHHHHhhcCcc--EEEEe
Confidence 345677788899988765 456899999999999999999999999999999999999999999999987544 78889
Q ss_pred cccccccCcCccCEEEEeCCCCCccchhHHHHHHhhcCC
Q psy2046 99 KAGGLGINLTAADTVIIHDVDFNPYNDKQAEDRCHRVGQ 137 (138)
Q Consensus 99 ~~~~~Gl~l~~~~~vi~~~~~~~~~~~~Q~~gR~~R~GQ 137 (138)
+++++|||+|.++-||++|.|-+|.+|++|.||..|.|.
T Consensus 312 DVAsRGLDIP~V~LVvN~diPr~P~~yiHRvGRtARAGR 350 (442)
T KOG0340|consen 312 DVASRGLDIPTVELVVNHDIPRDPKDYIHRVGRTARAGR 350 (442)
T ss_pred chhhcCCCCCceeEEEecCCCCCHHHHHHhhcchhcccC
Confidence 999999999999999999999999999999999988885
No 50
>PHA02558 uvsW UvsW helicase; Provisional
Probab=99.78 E-value=2.6e-18 Score=131.32 Aligned_cols=115 Identities=14% Similarity=0.086 Sum_probs=100.4
Q ss_pred CchHHHHHHHHHHhhhCCCeEEEEeccHHHHHHHHHHHhhcCCeEEEEeCCCChHHHHHHHHHHhcCCCceEEEEecccc
Q psy2046 22 SGKLKKLDEILPDLKKNGHRVLIFSQFIFVLDILGHYMDIRGWRHLRLDGATQVSSRQELIDEYNRDQDLFAFLLSTKAG 101 (138)
Q Consensus 22 s~K~~~l~~ll~~~~~~~~k~iif~~~~~~~~~l~~~l~~~g~~~~~i~g~~~~~~R~~~~~~F~~~~~~~vll~~~~~~ 101 (138)
..+...+.+++..+.+.+.+++||+...+.++.|.+.|+..|.++..+||+++.++|.++++.|+++. ..+++++++.+
T Consensus 327 ~~Rn~~I~~~~~~~~~~~~~~lV~~~~~~h~~~L~~~L~~~g~~v~~i~G~~~~~eR~~i~~~~~~~~-~~vLvaT~~~l 405 (501)
T PHA02558 327 TKRNKWIANLALKLAKKGENTFVMFKYVEHGKPLYEMLKKVYDKVYYVSGEVDTEDRNEMKKIAEGGK-GIIIVASYGVF 405 (501)
T ss_pred HHHHHHHHHHHHHHHhcCCCEEEEEEEHHHHHHHHHHHHHcCCCEEEEeCCCCHHHHHHHHHHHhCCC-CeEEEEEccee
Confidence 34555566666666667788999999999999999999999999999999999999999999998764 44566667999
Q ss_pred ccccCcCccCEEEEeCCCCCccchhHHHHHHhhcCC
Q psy2046 102 GLGINLTAADTVIIHDVDFNPYNDKQAEDRCHRVGQ 137 (138)
Q Consensus 102 ~~Gl~l~~~~~vi~~~~~~~~~~~~Q~~gR~~R~GQ 137 (138)
++|+|++++++||++.|+.+...+.|++||++|.|.
T Consensus 406 ~eG~Dip~ld~vIl~~p~~s~~~~~QriGR~~R~~~ 441 (501)
T PHA02558 406 STGISIKNLHHVIFAHPSKSKIIVLQSIGRVLRKHG 441 (501)
T ss_pred ccccccccccEEEEecCCcchhhhhhhhhccccCCC
Confidence 999999999999999999999999999999999874
No 51
>KOG1001|consensus
Probab=99.78 E-value=1.5e-20 Score=146.27 Aligned_cols=118 Identities=36% Similarity=0.545 Sum_probs=109.5
Q ss_pred cCchHHHHHHHHHHhhhCCC-eEEEEeccHHHHHHHHHHHhhcCCeEEEEeCCCChHHHHHHHHHHhcCCCceEEEEecc
Q psy2046 21 ESGKLKKLDEILPDLKKNGH-RVLIFSQFIFVLDILGHYMDIRGWRHLRLDGATQVSSRQELIDEYNRDQDLFAFLLSTK 99 (138)
Q Consensus 21 ~s~K~~~l~~ll~~~~~~~~-k~iif~~~~~~~~~l~~~l~~~g~~~~~i~g~~~~~~R~~~~~~F~~~~~~~vll~~~~ 99 (138)
.+.|+..+.+.+........ +++||+++...++.++..|...++.+..+.|.++...|.+.+..|..++...+++++.+
T Consensus 520 ~s~ki~~~~~~l~~~~~s~~~kiiifsq~~~~l~l~~~~l~~~~~~~~~~~g~~~~~~r~~s~~~~~~~~~~~vll~Slk 599 (674)
T KOG1001|consen 520 ESSKIYAFLKILQAKEMSEQPKIVIFSQLIWGLALVCLRLFFKGFVFLRYDGEMLMKIRTKSFTDFPCDPLVTALLMSLK 599 (674)
T ss_pred hhhhhHHHHHHHhhccCCCCCceeeehhHHHHHHHhhhhhhhcccccchhhhhhHHHHHHhhhcccccCccHHHHHHHHH
Confidence 67888888888874333333 99999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccCcCccCEEEEeCCCCCccchhHHHHHHhhcCCC
Q psy2046 100 AGGLGINLTAADTVIIHDVDFNPYNDKQAEDRCHRVGQT 138 (138)
Q Consensus 100 ~~~~Gl~l~~~~~vi~~~~~~~~~~~~Q~~gR~~R~GQt 138 (138)
+++.|+|++.|+||+..||+|||..+.|++.|+||+||+
T Consensus 600 ag~~glnlt~a~~v~~~d~~wnp~~eeQaidR~hrigq~ 638 (674)
T KOG1001|consen 600 AGKVGLNLTAASHVLLMDPWWNPAVEEQAIDRAHRIGQT 638 (674)
T ss_pred HhhhhhchhhhhHHHhhchhcChHHHHHHHHHHHHhccc
Confidence 999999999999999999999999999999999999996
No 52
>KOG0345|consensus
Probab=99.76 E-value=4.2e-18 Score=125.54 Aligned_cols=117 Identities=15% Similarity=0.285 Sum_probs=101.2
Q ss_pred cccccCchHHHHHHHHHHhhhCCCeEEEEeccHHHHHHHHHHHhhc--CCeEEEEeCCCChHHHHHHHHHHhcCCCceEE
Q psy2046 17 DLVVESGKLKKLDEILPDLKKNGHRVLIFSQFIFVLDILGHYMDIR--GWRHLRLDGATQVSSRQELIDEYNRDQDLFAF 94 (138)
Q Consensus 17 ~~~~~s~K~~~l~~ll~~~~~~~~k~iif~~~~~~~~~l~~~l~~~--g~~~~~i~g~~~~~~R~~~~~~F~~~~~~~vl 94 (138)
..+..-.|+..+.++|.. ...+|+|||..+....+.....|... +.+...+||.+++.+|.+.+++|...+.. +
T Consensus 235 ~v~~a~eK~~~lv~~L~~--~~~kK~iVFF~TCasVeYf~~~~~~~l~~~~i~~iHGK~~q~~R~k~~~~F~~~~~~--v 310 (567)
T KOG0345|consen 235 LVCEADEKLSQLVHLLNN--NKDKKCIVFFPTCASVEYFGKLFSRLLKKREIFSIHGKMSQKARAKVLEAFRKLSNG--V 310 (567)
T ss_pred eEecHHHHHHHHHHHHhc--cccccEEEEecCcchHHHHHHHHHHHhCCCcEEEecchhcchhHHHHHHHHHhccCc--e
Confidence 334555788888888864 45679999999999888877777654 66799999999999999999999875444 8
Q ss_pred EEeccccccccCcCccCEEEEeCCCCCccchhHHHHHHhhcCC
Q psy2046 95 LLSTKAGGLGINLTAADTVIIHDVDFNPYNDKQAEDRCHRVGQ 137 (138)
Q Consensus 95 l~~~~~~~~Gl~l~~~~~vi~~~~~~~~~~~~Q~~gR~~R~GQ 137 (138)
|.+|+++++|||+++++.||.+|||-++..+.||.||++|.|.
T Consensus 311 l~~TDVaARGlDip~iD~VvQ~DpP~~~~~FvHR~GRTaR~gr 353 (567)
T KOG0345|consen 311 LFCTDVAARGLDIPGIDLVVQFDPPKDPSSFVHRCGRTARAGR 353 (567)
T ss_pred EEeehhhhccCCCCCceEEEecCCCCChhHHHhhcchhhhccC
Confidence 8899999999999999999999999999999999999999985
No 53
>PRK12898 secA preprotein translocase subunit SecA; Reviewed
Probab=99.75 E-value=1.4e-17 Score=129.15 Aligned_cols=114 Identities=18% Similarity=0.289 Sum_probs=97.6
Q ss_pred ccCchHHHHHHHHHHhhhCCCeEEEEeccHHHHHHHHHHHhhcCCeEEEEeCCCChHHHHHHHHHHhcCCCceEEEEecc
Q psy2046 20 VESGKLKKLDEILPDLKKNGHRVLIFSQFIFVLDILGHYMDIRGWRHLRLDGATQVSSRQELIDEYNRDQDLFAFLLSTK 99 (138)
Q Consensus 20 ~~s~K~~~l~~ll~~~~~~~~k~iif~~~~~~~~~l~~~l~~~g~~~~~i~g~~~~~~R~~~~~~F~~~~~~~vll~~~~ 99 (138)
....|...+.+.+......+.++|||++++...+.+...|...|+++..+||..+ +|+..+..|...+.. ++++|+
T Consensus 454 t~~~K~~aL~~~i~~~~~~~~pvLIft~t~~~se~L~~~L~~~gi~~~~Lhg~~~--~rE~~ii~~ag~~g~--VlVATd 529 (656)
T PRK12898 454 TAAAKWAAVAARVRELHAQGRPVLVGTRSVAASERLSALLREAGLPHQVLNAKQD--AEEAAIVARAGQRGR--ITVATN 529 (656)
T ss_pred CHHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHCCCCEEEeeCCcH--HHHHHHHHHcCCCCc--EEEEcc
Confidence 3456899999998877666788999999999999999999999999999999865 566666666544333 788999
Q ss_pred ccccccCcC---ccC-----EEEEeCCCCCccchhHHHHHHhhcCC
Q psy2046 100 AGGLGINLT---AAD-----TVIIHDVDFNPYNDKQAEDRCHRVGQ 137 (138)
Q Consensus 100 ~~~~Gl~l~---~~~-----~vi~~~~~~~~~~~~Q~~gR~~R~GQ 137 (138)
.+|+|+|+. .+. +||+++.|-+...|.|++||++|.|.
T Consensus 530 mAgRGtDI~l~~~V~~~GGLhVI~~d~P~s~r~y~hr~GRTGRqG~ 575 (656)
T PRK12898 530 MAGRGTDIKLEPGVAARGGLHVILTERHDSARIDRQLAGRCGRQGD 575 (656)
T ss_pred chhcccCcCCccchhhcCCCEEEEcCCCCCHHHHHHhcccccCCCC
Confidence 999999998 444 99999999999999999999999996
No 54
>PRK09200 preprotein translocase subunit SecA; Reviewed
Probab=99.75 E-value=1e-17 Score=132.19 Aligned_cols=116 Identities=22% Similarity=0.220 Sum_probs=102.4
Q ss_pred cccCchHHHHHHHHHHhhhCCCeEEEEeccHHHHHHHHHHHhhcCCeEEEEeCCCChHHHHHHHHHHhcCCCceEEEEec
Q psy2046 19 VVESGKLKKLDEILPDLKKNGHRVLIFSQFIFVLDILGHYMDIRGWRHLRLDGATQVSSRQELIDEYNRDQDLFAFLLST 98 (138)
Q Consensus 19 ~~~s~K~~~l~~ll~~~~~~~~k~iif~~~~~~~~~l~~~l~~~g~~~~~i~g~~~~~~R~~~~~~F~~~~~~~vll~~~ 98 (138)
.....|...+.+.+.....++.++||||+++...+.++..|.+.|+++..+||.+++.++..+..+++.+ -++++|
T Consensus 408 ~~~~~K~~al~~~i~~~~~~~~pvLIf~~t~~~se~l~~~L~~~gi~~~~L~~~~~~~e~~~i~~ag~~g----~VlIAT 483 (790)
T PRK09200 408 VTLDEKYKAVIEEVKERHETGRPVLIGTGSIEQSETFSKLLDEAGIPHNLLNAKNAAKEAQIIAEAGQKG----AVTVAT 483 (790)
T ss_pred cCHHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHCCCCEEEecCCccHHHHHHHHHcCCCC----eEEEEc
Confidence 3446789999998887767789999999999999999999999999999999999888887777776544 278899
Q ss_pred cccccccCc---CccC-----EEEEeCCCCCccchhHHHHHHhhcCCC
Q psy2046 99 KAGGLGINL---TAAD-----TVIIHDVDFNPYNDKQAEDRCHRVGQT 138 (138)
Q Consensus 99 ~~~~~Gl~l---~~~~-----~vi~~~~~~~~~~~~Q~~gR~~R~GQt 138 (138)
+.+|+|+|+ +.++ |||+++.|-++..|.|++||++|.|+.
T Consensus 484 dmAgRG~DI~l~~~V~~~GGL~VI~~d~p~s~r~y~qr~GRtGR~G~~ 531 (790)
T PRK09200 484 NMAGRGTDIKLGEGVHELGGLAVIGTERMESRRVDLQLRGRSGRQGDP 531 (790)
T ss_pred cchhcCcCCCcccccccccCcEEEeccCCCCHHHHHHhhccccCCCCC
Confidence 999999999 5777 999999999999999999999999963
No 55
>KOG0348|consensus
Probab=99.74 E-value=3.6e-17 Score=122.44 Aligned_cols=117 Identities=20% Similarity=0.316 Sum_probs=94.9
Q ss_pred cccCchHH--HHHHHHHHhhh--CCCeEEEEeccHHHHHHHHHHHhhc----------------------CCeEEEEeCC
Q psy2046 19 VVESGKLK--KLDEILPDLKK--NGHRVLIFSQFIFVLDILGHYMDIR----------------------GWRHLRLDGA 72 (138)
Q Consensus 19 ~~~s~K~~--~l~~ll~~~~~--~~~k~iif~~~~~~~~~l~~~l~~~----------------------g~~~~~i~g~ 72 (138)
..-++|+. .|..+|....+ ...|+|||..+.+..+.-.+.|... +.++..+||+
T Consensus 401 ~vVPpKLRLV~Laa~L~~~~k~~~~qk~iVF~S~~d~VeFHy~lf~~~l~~~~e~~s~~~~s~g~~~l~~~~k~~rLHGs 480 (708)
T KOG0348|consen 401 TVVPPKLRLVALAALLLNKVKFEEKQKMIVFFSCSDSVEFHYSLFSEALLSHLEGSSGAPDSEGLPPLFMDLKFYRLHGS 480 (708)
T ss_pred EecCCchhHHHHHHHHHHHhhhhhhceeEEEEechhHHHHHHHHHHhhhhcccccccCCcccCCChhhhhcceEEEecCc
Confidence 33456655 45556655433 3458899999988877655555432 4468899999
Q ss_pred CChHHHHHHHHHHhcCCCceEEEEeccccccccCcCccCEEEEeCCCCCccchhHHHHHHhhcCC
Q psy2046 73 TQVSSRQELIDEYNRDQDLFAFLLSTKAGGLGINLTAADTVIIHDVDFNPYNDKQAEDRCHRVGQ 137 (138)
Q Consensus 73 ~~~~~R~~~~~~F~~~~~~~vll~~~~~~~~Gl~l~~~~~vi~~~~~~~~~~~~Q~~gR~~R~GQ 137 (138)
|++++|...+..|...... +|+||+++++|||||.+..||-||+|+.+++|.+|+||..|+|.
T Consensus 481 m~QeeRts~f~~Fs~~~~~--VLLcTDVAaRGLDlP~V~~vVQYd~P~s~adylHRvGRTARaG~ 543 (708)
T KOG0348|consen 481 MEQEERTSVFQEFSHSRRA--VLLCTDVAARGLDLPHVGLVVQYDPPFSTADYLHRVGRTARAGE 543 (708)
T ss_pred hhHHHHHHHHHhhccccce--EEEehhhhhccCCCCCcCeEEEeCCCCCHHHHHHHhhhhhhccC
Confidence 9999999999999987655 88899999999999999999999999999999999999999995
No 56
>PRK13767 ATP-dependent helicase; Provisional
Probab=99.72 E-value=4.8e-17 Score=131.07 Aligned_cols=109 Identities=18% Similarity=0.088 Sum_probs=95.4
Q ss_pred HHHHHHHHHhhhCCCeEEEEeccHHHHHHHHHHHhhc------CCeEEEEeCCCChHHHHHHHHHHhcCCCceEEEEecc
Q psy2046 26 KKLDEILPDLKKNGHRVLIFSQFIFVLDILGHYMDIR------GWRHLRLDGATQVSSRQELIDEYNRDQDLFAFLLSTK 99 (138)
Q Consensus 26 ~~l~~ll~~~~~~~~k~iif~~~~~~~~~l~~~l~~~------g~~~~~i~g~~~~~~R~~~~~~F~~~~~~~vll~~~~ 99 (138)
..+.+.+.++.+.+.++||||+++..++.+...|... +..+..+||++++++|..+.++|+++... +|++|+
T Consensus 271 ~~l~~~L~~~i~~~~~~LVF~nTr~~ae~la~~L~~~~~~~~~~~~i~~hHg~ls~~~R~~ve~~fk~G~i~--vLVaTs 348 (876)
T PRK13767 271 EALYETLHELIKEHRTTLIFTNTRSGAERVLYNLRKRFPEEYDEDNIGAHHSSLSREVRLEVEEKLKRGELK--VVVSST 348 (876)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCHHHHHHHHHHHHHhchhhccccceeeeeCCCCHHHHHHHHHHHHcCCCe--EEEECC
Confidence 3455566665666789999999999999999998763 45788999999999999999999998653 788999
Q ss_pred ccccccCcCccCEEEEeCCCCCccchhHHHHHHhhcC
Q psy2046 100 AGGLGINLTAADTVIIHDVDFNPYNDKQAEDRCHRVG 136 (138)
Q Consensus 100 ~~~~Gl~l~~~~~vi~~~~~~~~~~~~Q~~gR~~R~G 136 (138)
++++|+|+++.++||++++|.+...|.||+||+||.+
T Consensus 349 ~Le~GIDip~Vd~VI~~~~P~sv~~ylQRiGRaGR~~ 385 (876)
T PRK13767 349 SLELGIDIGYIDLVVLLGSPKSVSRLLQRIGRAGHRL 385 (876)
T ss_pred hHHhcCCCCCCcEEEEeCCCCCHHHHHHhcccCCCCC
Confidence 9999999999999999999999999999999999863
No 57
>TIGR00963 secA preprotein translocase, SecA subunit. The proteins SecA-F and SecY, not all of which are necessary, comprise the standard prokaryotic protein translocation apparatus. Other, specialized translocation systems also exist but are not as broadly distributed. This model describes SecA, an essential member of the apparatus.
Probab=99.71 E-value=1.1e-16 Score=125.12 Aligned_cols=114 Identities=20% Similarity=0.221 Sum_probs=103.3
Q ss_pred cCchHHHHHHHHHHhhhCCCeEEEEeccHHHHHHHHHHHhhcCCeEEEEeCCCChHHHHHHHHHHhcCCCceEEEEeccc
Q psy2046 21 ESGKLKKLDEILPDLKKNGHRVLIFSQFIFVLDILGHYMDIRGWRHLRLDGATQVSSRQELIDEYNRDQDLFAFLLSTKA 100 (138)
Q Consensus 21 ~s~K~~~l~~ll~~~~~~~~k~iif~~~~~~~~~l~~~l~~~g~~~~~i~g~~~~~~R~~~~~~F~~~~~~~vll~~~~~ 100 (138)
...|+.++.+.+......+..+||||.+....+.++..|.+.|+++..+||. +.+|+..+-+|..++.. ++++|+.
T Consensus 387 ~~~k~~ai~~~i~~~~~~grpvLV~t~si~~se~ls~~L~~~gi~~~~Lna~--q~~rEa~ii~~ag~~g~--VtIATnm 462 (745)
T TIGR00963 387 EEEKWKAVVDEIKERHAKGQPVLVGTTSVEKSELLSNLLKERGIPHNVLNAK--NHEREAEIIAQAGRKGA--VTIATNM 462 (745)
T ss_pred HHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHcCCCeEEeeCC--hHHHHHHHHHhcCCCce--EEEEecc
Confidence 4468888888888888889999999999999999999999999999999998 77999999999766544 8888999
Q ss_pred cccccCcCc-------cCEEEEeCCCCCccchhHHHHHHhhcCCC
Q psy2046 101 GGLGINLTA-------ADTVIIHDVDFNPYNDKQAEDRCHRVGQT 138 (138)
Q Consensus 101 ~~~Gl~l~~-------~~~vi~~~~~~~~~~~~Q~~gR~~R~GQt 138 (138)
+|+|+|+.. ..|||+++.|-+...+.|+.||++|.|+.
T Consensus 463 AgRGtDI~l~~V~~~GGl~VI~t~~p~s~ri~~q~~GRtGRqG~~ 507 (745)
T TIGR00963 463 AGRGTDIKLEEVKELGGLYVIGTERHESRRIDNQLRGRSGRQGDP 507 (745)
T ss_pred ccCCcCCCccchhhcCCcEEEecCCCCcHHHHHHHhccccCCCCC
Confidence 999999987 66999999999999999999999999963
No 58
>KOG0338|consensus
Probab=99.70 E-value=6.4e-17 Score=120.59 Aligned_cols=109 Identities=17% Similarity=0.228 Sum_probs=97.2
Q ss_pred HHHHHHHHHHhhhCCCeEEEEeccHHHHHHHHHHHhhcCCeEEEEeCCCChHHHHHHHHHHhcCCCceEEEEeccccccc
Q psy2046 25 LKKLDEILPDLKKNGHRVLIFSQFIFVLDILGHYMDIRGWRHLRLDGATQVSSRQELIDEYNRDQDLFAFLLSTKAGGLG 104 (138)
Q Consensus 25 ~~~l~~ll~~~~~~~~k~iif~~~~~~~~~l~~~l~~~g~~~~~i~g~~~~~~R~~~~~~F~~~~~~~vll~~~~~~~~G 104 (138)
-..|..++.... .+++|||+.+...++.+.-.|.-.|+++..+||++++.+|.+.+++|++.... +|++|+++++|
T Consensus 414 ea~l~~l~~rtf--~~~~ivFv~tKk~AHRl~IllGLlgl~agElHGsLtQ~QRlesL~kFk~~eid--vLiaTDvAsRG 489 (691)
T KOG0338|consen 414 EAMLASLITRTF--QDRTIVFVRTKKQAHRLRILLGLLGLKAGELHGSLTQEQRLESLEKFKKEEID--VLIATDVASRG 489 (691)
T ss_pred HHHHHHHHHHhc--ccceEEEEehHHHHHHHHHHHHHhhchhhhhcccccHHHHHHHHHHHHhccCC--EEEEechhhcc
Confidence 334445554332 45899999999999999999999999999999999999999999999988766 88899999999
Q ss_pred cCcCccCEEEEeCCCCCccchhHHHHHHhhcCC
Q psy2046 105 INLTAADTVIIHDVDFNPYNDKQAEDRCHRVGQ 137 (138)
Q Consensus 105 l~l~~~~~vi~~~~~~~~~~~~Q~~gR~~R~GQ 137 (138)
||+.++..||+|++|-+...|.||.||..|.|.
T Consensus 490 LDI~gV~tVINy~mP~t~e~Y~HRVGRTARAGR 522 (691)
T KOG0338|consen 490 LDIEGVQTVINYAMPKTIEHYLHRVGRTARAGR 522 (691)
T ss_pred CCccceeEEEeccCchhHHHHHHHhhhhhhccc
Confidence 999999999999999999999999999988884
No 59
>COG0514 RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair]
Probab=99.70 E-value=1.7e-16 Score=121.41 Aligned_cols=97 Identities=18% Similarity=0.173 Sum_probs=92.3
Q ss_pred CCeEEEEeccHHHHHHHHHHHhhcCCeEEEEeCCCChHHHHHHHHHHhcCCCceEEEEeccccccccCcCccCEEEEeCC
Q psy2046 39 GHRVLIFSQFIFVLDILGHYMDIRGWRHLRLDGATQVSSRQELIDEYNRDQDLFAFLLSTKAGGLGINLTAADTVIIHDV 118 (138)
Q Consensus 39 ~~k~iif~~~~~~~~~l~~~l~~~g~~~~~i~g~~~~~~R~~~~~~F~~~~~~~vll~~~~~~~~Gl~l~~~~~vi~~~~ 118 (138)
+...||||.+++..+.++++|...|+++..|||+++.++|+.+-++|.+++.. ++++|.+.|.|+|-++...||+|++
T Consensus 230 ~~~GIIYc~sRk~~E~ia~~L~~~g~~a~~YHaGl~~~eR~~~q~~f~~~~~~--iiVAT~AFGMGIdKpdVRfViH~~l 307 (590)
T COG0514 230 SKSGIIYCLTRKKVEELAEWLRKNGISAGAYHAGLSNEERERVQQAFLNDEIK--VMVATNAFGMGIDKPDVRFVIHYDL 307 (590)
T ss_pred CCCeEEEEeeHHhHHHHHHHHHHCCCceEEecCCCCHHHHHHHHHHHhcCCCc--EEEEeccccCccCCCCceEEEEecC
Confidence 45689999999999999999999999999999999999999999999988765 8889999999999999999999999
Q ss_pred CCCccchhHHHHHHhhcCC
Q psy2046 119 DFNPYNDKQAEDRCHRVGQ 137 (138)
Q Consensus 119 ~~~~~~~~Q~~gR~~R~GQ 137 (138)
|-+...|.|-+||+||.|.
T Consensus 308 P~s~EsYyQE~GRAGRDG~ 326 (590)
T COG0514 308 PGSIESYYQETGRAGRDGL 326 (590)
T ss_pred CCCHHHHHHHHhhccCCCC
Confidence 9999999999999999995
No 60
>TIGR01587 cas3_core CRISPR-associated helicase Cas3. This model represents the highly conserved core region of an alignment of Cas3, a protein found in association with CRISPR repeat elements in a broad range of bacteria and archaea. Cas3 appears to be a helicase, with regions found by pfam00270 (DEAD/DEAH box helicase) and pfam00271 (Helicase conserved C-terminal domain). Some but not all members have an N-terminal HD domain region (pfam01966) that is not included within this model.
Probab=99.70 E-value=2.3e-16 Score=116.01 Aligned_cols=109 Identities=17% Similarity=0.247 Sum_probs=90.8
Q ss_pred chHHHHHHHHHHhhhCCCeEEEEeccHHHHHHHHHHHhhcCC--eEEEEeCCCChHHHHH----HHHHHhcCCCceEEEE
Q psy2046 23 GKLKKLDEILPDLKKNGHRVLIFSQFIFVLDILGHYMDIRGW--RHLRLDGATQVSSRQE----LIDEYNRDQDLFAFLL 96 (138)
Q Consensus 23 ~K~~~l~~ll~~~~~~~~k~iif~~~~~~~~~l~~~l~~~g~--~~~~i~g~~~~~~R~~----~~~~F~~~~~~~vll~ 96 (138)
.|...+.+++.. ...+.++|||+++.+.++.+...|++.+. .+..+||++++.+|.+ +++.|+++... +|+
T Consensus 207 ~~~~~l~~l~~~-~~~~~~~lVf~~t~~~~~~~~~~L~~~~~~~~~~~~h~~~~~~~r~~~~~~~~~~f~~~~~~--ilv 283 (358)
T TIGR01587 207 GEISSLERLLEF-IKKGGKIAIIVNTVDRAQEFYQQLKENAPEEEIMLLHSRFTEKDRAKKEAELLEEMKKNEKF--VIV 283 (358)
T ss_pred cCHHHHHHHHHH-hhCCCeEEEEECCHHHHHHHHHHHHhhcCCCeEEEEECCCCHHHHHHHHHHHHHHhcCCCCe--EEE
Confidence 466666666644 34567999999999999999999988766 4899999999999976 48999886543 788
Q ss_pred eccccccccCcCccCEEEEeCCCCCccchhHHHHHHhhcCC
Q psy2046 97 STKAGGLGINLTAADTVIIHDVDFNPYNDKQAEDRCHRVGQ 137 (138)
Q Consensus 97 ~~~~~~~Gl~l~~~~~vi~~~~~~~~~~~~Q~~gR~~R~GQ 137 (138)
+|+++++|+|++ ++.+|++..| +..|.||+||++|.|.
T Consensus 284 aT~~~~~GiDi~-~~~vi~~~~~--~~~~iqr~GR~gR~g~ 321 (358)
T TIGR01587 284 ATQVIEASLDIS-ADVMITELAP--IDSLIQRLGRLHRYGR 321 (358)
T ss_pred ECcchhceeccC-CCEEEEcCCC--HHHHHHHhccccCCCC
Confidence 999999999995 7888887665 6789999999999985
No 61
>KOG0344|consensus
Probab=99.70 E-value=1.2e-16 Score=120.37 Aligned_cols=114 Identities=21% Similarity=0.189 Sum_probs=103.0
Q ss_pred cCchHHHHHHHHHHhhhCCCeEEEEeccHHHHHHHHHHH-hhcCCeEEEEeCCCChHHHHHHHHHHhcCCCceEEEEecc
Q psy2046 21 ESGKLKKLDEILPDLKKNGHRVLIFSQFIFVLDILGHYM-DIRGWRHLRLDGATQVSSRQELIDEYNRDQDLFAFLLSTK 99 (138)
Q Consensus 21 ~s~K~~~l~~ll~~~~~~~~k~iif~~~~~~~~~l~~~l-~~~g~~~~~i~g~~~~~~R~~~~~~F~~~~~~~vll~~~~ 99 (138)
..+|+-.+.+++... -...++||.++.+.+..|...| .-.++.+.++||..++.+|++.+++|+.|+.. +|++|+
T Consensus 371 e~~K~lA~rq~v~~g--~~PP~lIfVQs~eRak~L~~~L~~~~~i~v~vIh~e~~~~qrde~~~~FR~g~Iw--vLicTd 446 (593)
T KOG0344|consen 371 EKGKLLALRQLVASG--FKPPVLIFVQSKERAKQLFEELEIYDNINVDVIHGERSQKQRDETMERFRIGKIW--VLICTD 446 (593)
T ss_pred chhHHHHHHHHHhcc--CCCCeEEEEecHHHHHHHHHHhhhccCcceeeEecccchhHHHHHHHHHhccCee--EEEehh
Confidence 457888888888754 3458999999999999999999 56789999999999999999999999999776 889999
Q ss_pred ccccccCcCccCEEEEeCCCCCccchhHHHHHHhhcCCC
Q psy2046 100 AGGLGINLTAADTVIIHDVDFNPYNDKQAEDRCHRVGQT 138 (138)
Q Consensus 100 ~~~~Gl~l~~~~~vi~~~~~~~~~~~~Q~~gR~~R~GQt 138 (138)
+.++|+|+.+++.||+||.|-....|++|+||++|.|+.
T Consensus 447 ll~RGiDf~gvn~VInyD~p~s~~syihrIGRtgRag~~ 485 (593)
T KOG0344|consen 447 LLARGIDFKGVNLVINYDFPQSDLSYIHRIGRTGRAGRS 485 (593)
T ss_pred hhhccccccCcceEEecCCCchhHHHHHHhhccCCCCCC
Confidence 999999999999999999999999999999999999974
No 62
>TIGR00580 mfd transcription-repair coupling factor (mfd). All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families.
Probab=99.70 E-value=2e-16 Score=127.40 Aligned_cols=101 Identities=21% Similarity=0.206 Sum_probs=90.8
Q ss_pred hhCCCeEEEEeccHHHHHHHHHHHhhc--CCeEEEEeCCCChHHHHHHHHHHhcCCCceEEEEeccccccccCcCccCEE
Q psy2046 36 KKNGHRVLIFSQFIFVLDILGHYMDIR--GWRHLRLDGATQVSSRQELIDEYNRDQDLFAFLLSTKAGGLGINLTAADTV 113 (138)
Q Consensus 36 ~~~~~k~iif~~~~~~~~~l~~~l~~~--g~~~~~i~g~~~~~~R~~~~~~F~~~~~~~vll~~~~~~~~Gl~l~~~~~v 113 (138)
...+.+++||++....++.+.+.|+.. ++++..+||.+++.+|.+++++|++++.. +|++|++.++|+|++++++|
T Consensus 657 l~~g~qv~if~n~i~~~e~l~~~L~~~~p~~~v~~lHG~m~~~eRe~im~~F~~Gk~~--ILVaT~iie~GIDIp~v~~V 734 (926)
T TIGR00580 657 LLRGGQVFYVHNRIESIEKLATQLRELVPEARIAIAHGQMTENELEEVMLEFYKGEFQ--VLVCTTIIETGIDIPNANTI 734 (926)
T ss_pred HHcCCeEEEEECCcHHHHHHHHHHHHhCCCCeEEEecCCCCHHHHHHHHHHHHcCCCC--EEEECChhhcccccccCCEE
Confidence 345779999999999999999999874 78899999999999999999999998765 88899999999999999999
Q ss_pred EEeCCC-CCccchhHHHHHHhhcCCC
Q psy2046 114 IIHDVD-FNPYNDKQAEDRCHRVGQT 138 (138)
Q Consensus 114 i~~~~~-~~~~~~~Q~~gR~~R~GQt 138 (138)
|+++.+ +...++.|++||++|.|+.
T Consensus 735 Ii~~a~~~gls~l~Qr~GRvGR~g~~ 760 (926)
T TIGR00580 735 IIERADKFGLAQLYQLRGRVGRSKKK 760 (926)
T ss_pred EEecCCCCCHHHHHHHhcCCCCCCCC
Confidence 999886 5677899999999999863
No 63
>KOG0327|consensus
Probab=99.70 E-value=7.1e-17 Score=116.40 Aligned_cols=111 Identities=20% Similarity=0.273 Sum_probs=102.0
Q ss_pred CchHHHHHHHHHHhhhCCCeEEEEeccHHHHHHHHHHHhhcCCeEEEEeCCCChHHHHHHHHHHhcCCCceEEEEecccc
Q psy2046 22 SGKLKKLDEILPDLKKNGHRVLIFSQFIFVLDILGHYMDIRGWRHLRLDGATQVSSRQELIDEYNRDQDLFAFLLSTKAG 101 (138)
Q Consensus 22 s~K~~~l~~ll~~~~~~~~k~iif~~~~~~~~~l~~~l~~~g~~~~~i~g~~~~~~R~~~~~~F~~~~~~~vll~~~~~~ 101 (138)
.+|+..|+++.. +-.+.++|+++.+.++.+...|...++..+.+||.+.+.+|..++..|+.+.+. +|++++..
T Consensus 250 ~~k~~~l~dl~~----~~~q~~if~nt~r~v~~l~~~L~~~~~~~s~~~~d~~q~~R~~~~~ef~~gssr--vlIttdl~ 323 (397)
T KOG0327|consen 250 EEKLDTLCDLYR----RVTQAVIFCNTRRKVDNLTDKLRAHGFTVSAIHGDMEQNERDTLMREFRSGSSR--VLITTDLL 323 (397)
T ss_pred cccccHHHHHHH----hhhcceEEecchhhHHHHHHHHhhCCceEEEeecccchhhhhHHHHHhhcCCce--EEeecccc
Confidence 348888888876 445789999999999999999999999999999999999999999999988664 78889999
Q ss_pred ccccCcCccCEEEEeCCCCCccchhHHHHHHhhcCCC
Q psy2046 102 GLGINLTAADTVIIHDVDFNPYNDKQAEDRCHRVGQT 138 (138)
Q Consensus 102 ~~Gl~l~~~~~vi~~~~~~~~~~~~Q~~gR~~R~GQt 138 (138)
++|++++..+-||+|+.|-+...|.+|+||.+|+|.+
T Consensus 324 argidv~~~slvinydlP~~~~~yihR~gr~gr~grk 360 (397)
T KOG0327|consen 324 ARGIDVQQVSLVVNYDLPARKENYIHRIGRAGRFGRK 360 (397)
T ss_pred ccccchhhcceeeeeccccchhhhhhhcccccccCCC
Confidence 9999999999999999999999999999999999953
No 64
>TIGR00631 uvrb excinuclease ABC, B subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University)
Probab=99.70 E-value=2.1e-16 Score=123.66 Aligned_cols=114 Identities=18% Similarity=0.139 Sum_probs=102.1
Q ss_pred cCchHHHHHHHHHHhhhCCCeEEEEeccHHHHHHHHHHHhhcCCeEEEEeCCCChHHHHHHHHHHhcCCCceEEEEeccc
Q psy2046 21 ESGKLKKLDEILPDLKKNGHRVLIFSQFIFVLDILGHYMDIRGWRHLRLDGATQVSSRQELIDEYNRDQDLFAFLLSTKA 100 (138)
Q Consensus 21 ~s~K~~~l~~ll~~~~~~~~k~iif~~~~~~~~~l~~~l~~~g~~~~~i~g~~~~~~R~~~~~~F~~~~~~~vll~~~~~ 100 (138)
..+++..+.+-+....+++.+++||+++...++.|.+.|...|+++..+||.++..+|.+++.+|+.++.. ++++++.
T Consensus 424 ~~~qi~~Ll~eI~~~~~~g~~vLIf~~tk~~ae~L~~~L~~~gi~~~~lh~~~~~~eR~~~l~~fr~G~i~--VLV~t~~ 501 (655)
T TIGR00631 424 TDGQVDDLLSEIRQRVARNERVLVTTLTKKMAEDLTDYLKELGIKVRYLHSEIDTLERVEIIRDLRLGEFD--VLVGINL 501 (655)
T ss_pred ccchHHHHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHhhhccceeeeeCCCCHHHHHHHHHHHhcCCce--EEEEcCh
Confidence 34577778888877777899999999999999999999999999999999999999999999999987643 7788999
Q ss_pred cccccCcCccCEEEEeC-----CCCCccchhHHHHHHhhcC
Q psy2046 101 GGLGINLTAADTVIIHD-----VDFNPYNDKQAEDRCHRVG 136 (138)
Q Consensus 101 ~~~Gl~l~~~~~vi~~~-----~~~~~~~~~Q~~gR~~R~G 136 (138)
+++|++++.++.||++| .|-+...|+|++||++|..
T Consensus 502 L~rGfDiP~v~lVvi~DadifG~p~~~~~~iqriGRagR~~ 542 (655)
T TIGR00631 502 LREGLDLPEVSLVAILDADKEGFLRSERSLIQTIGRAARNV 542 (655)
T ss_pred hcCCeeeCCCcEEEEeCcccccCCCCHHHHHHHhcCCCCCC
Confidence 99999999999999998 5667889999999999963
No 65
>KOG0347|consensus
Probab=99.69 E-value=2.4e-17 Score=123.72 Aligned_cols=96 Identities=17% Similarity=0.206 Sum_probs=91.2
Q ss_pred CeEEEEeccHHHHHHHHHHHhhcCCeEEEEeCCCChHHHHHHHHHHhcCCCceEEEEeccccccccCcCccCEEEEeCCC
Q psy2046 40 HRVLIFSQFIFVLDILGHYMDIRGWRHLRLDGATQVSSRQELIDEYNRDQDLFAFLLSTKAGGLGINLTAADTVIIHDVD 119 (138)
Q Consensus 40 ~k~iif~~~~~~~~~l~~~l~~~g~~~~~i~g~~~~~~R~~~~~~F~~~~~~~vll~~~~~~~~Gl~l~~~~~vi~~~~~ 119 (138)
.++||||+.+..+..|..+|+..+++...+|..|.+.+|.+.+++|++.+.. +|++|+++++|||+|++.|||+|.-|
T Consensus 464 GrTlVF~NsId~vKRLt~~L~~L~i~p~~LHA~M~QKqRLknLEkF~~~~~~--VLiaTDVAARGLDIp~V~HVIHYqVP 541 (731)
T KOG0347|consen 464 GRTLVFCNSIDCVKRLTVLLNNLDIPPLPLHASMIQKQRLKNLEKFKQSPSG--VLIATDVAARGLDIPGVQHVIHYQVP 541 (731)
T ss_pred CceEEEechHHHHHHHHHHHhhcCCCCchhhHHHHHHHHHHhHHHHhcCCCe--EEEeehhhhccCCCCCcceEEEeecC
Confidence 4899999999999999999999999999999999999999999999987665 88899999999999999999999999
Q ss_pred CCccchhHHHHHHhhcCC
Q psy2046 120 FNPYNDKQAEDRCHRVGQ 137 (138)
Q Consensus 120 ~~~~~~~Q~~gR~~R~GQ 137 (138)
-....|++|-||..|.+.
T Consensus 542 rtseiYVHRSGRTARA~~ 559 (731)
T KOG0347|consen 542 RTSEIYVHRSGRTARANS 559 (731)
T ss_pred CccceeEecccccccccC
Confidence 999999999999999763
No 66
>TIGR03714 secA2 accessory Sec system translocase SecA2. Members of this protein family are homologous to SecA and part of the accessory Sec system. This system, including both five core proteins for export and a variable number of proteins for glycosylation, operates in certain Gram-positive pathogens for the maturation and delivery of serine-rich glycoproteins such as the cell surface glycoprotein GspB in Streptococcus gordonii.
Probab=99.69 E-value=1.9e-16 Score=124.36 Aligned_cols=114 Identities=17% Similarity=0.214 Sum_probs=99.5
Q ss_pred cccCchHHHHHHHHHHhhhCCCeEEEEeccHHHHHHHHHHHhhcCCeEEEEeCCCChHHHHHHHHHHhcCCCceEEEEec
Q psy2046 19 VVESGKLKKLDEILPDLKKNGHRVLIFSQFIFVLDILGHYMDIRGWRHLRLDGATQVSSRQELIDEYNRDQDLFAFLLST 98 (138)
Q Consensus 19 ~~~s~K~~~l~~ll~~~~~~~~k~iif~~~~~~~~~l~~~l~~~g~~~~~i~g~~~~~~R~~~~~~F~~~~~~~vll~~~ 98 (138)
.....|..++.+.+.+....+.++||||++....+.++..|.+.|+++..+||.+++.++..+..+|+.+ -++++|
T Consensus 404 ~~~~~K~~ai~~~i~~~~~~~~pvLIft~s~~~se~ls~~L~~~gi~~~~L~a~~~~~E~~ii~~ag~~g----~VlIAT 479 (762)
T TIGR03714 404 ATLPEKLMATLEDVKEYHETGQPVLLITGSVEMSEIYSELLLREGIPHNLLNAQNAAKEAQIIAEAGQKG----AVTVAT 479 (762)
T ss_pred ECHHHHHHHHHHHHHHHhhCCCCEEEEECcHHHHHHHHHHHHHCCCCEEEecCCChHHHHHHHHHcCCCC----eEEEEc
Confidence 4445789999999988778899999999999999999999999999999999999988887777666544 278899
Q ss_pred cccccccCcC---------ccCEEEEeCCCCCccchhHHHHHHhhcCC
Q psy2046 99 KAGGLGINLT---------AADTVIIHDVDFNPYNDKQAEDRCHRVGQ 137 (138)
Q Consensus 99 ~~~~~Gl~l~---------~~~~vi~~~~~~~~~~~~Q~~gR~~R~GQ 137 (138)
+.+|+|+|++ +.++|+++++|-+... .|+.||++|.|.
T Consensus 480 dmAgRGtDI~l~~~v~~~GGL~vIit~~~ps~rid-~qr~GRtGRqG~ 526 (762)
T TIGR03714 480 SMAGRGTDIKLGKGVAELGGLAVIGTERMENSRVD-LQLRGRSGRQGD 526 (762)
T ss_pred cccccccCCCCCccccccCCeEEEEecCCCCcHHH-HHhhhcccCCCC
Confidence 9999999999 8899999999976554 899999999995
No 67
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=99.69 E-value=5.6e-16 Score=122.21 Aligned_cols=114 Identities=12% Similarity=0.161 Sum_probs=93.2
Q ss_pred CchHHHHHHHHHHhhhCCCeEEEEeccHH--------HHHHHHHHHhhc--CCeEEEEeCCCChHHHHHHHHHHhcCCCc
Q psy2046 22 SGKLKKLDEILPDLKKNGHRVLIFSQFIF--------VLDILGHYMDIR--GWRHLRLDGATQVSSRQELIDEYNRDQDL 91 (138)
Q Consensus 22 s~K~~~l~~ll~~~~~~~~k~iif~~~~~--------~~~~l~~~l~~~--g~~~~~i~g~~~~~~R~~~~~~F~~~~~~ 91 (138)
..+...+.+.+.....++.+++|||+..+ ....+.+.|... ++++..+||++++.+|.+++++|++++..
T Consensus 454 ~~~~~~~~~~i~~~~~~g~q~~v~~~~ie~s~~l~~~~~~~~~~~L~~~~~~~~v~~lHG~m~~~eR~~i~~~F~~g~~~ 533 (681)
T PRK10917 454 DSRRDEVYERIREEIAKGRQAYVVCPLIEESEKLDLQSAEETYEELQEAFPELRVGLLHGRMKPAEKDAVMAAFKAGEID 533 (681)
T ss_pred cccHHHHHHHHHHHHHcCCcEEEEEcccccccchhHHHHHHHHHHHHHHCCCCcEEEEeCCCCHHHHHHHHHHHHcCCCC
Confidence 34555666666666678889999998543 234556666554 47899999999999999999999988654
Q ss_pred eEEEEeccccccccCcCccCEEEEeCCCC-CccchhHHHHHHhhcCC
Q psy2046 92 FAFLLSTKAGGLGINLTAADTVIIHDVDF-NPYNDKQAEDRCHRVGQ 137 (138)
Q Consensus 92 ~vll~~~~~~~~Gl~l~~~~~vi~~~~~~-~~~~~~Q~~gR~~R~GQ 137 (138)
+|++|++.++|+|+++++.||+++++. ....+.|+.||++|.|.
T Consensus 534 --ILVaT~vie~GiDip~v~~VIi~~~~r~gls~lhQ~~GRvGR~g~ 578 (681)
T PRK10917 534 --ILVATTVIEVGVDVPNATVMVIENAERFGLAQLHQLRGRVGRGAA 578 (681)
T ss_pred --EEEECcceeeCcccCCCcEEEEeCCCCCCHHHHHHHhhcccCCCC
Confidence 888999999999999999999999884 57889999999999985
No 68
>PRK10689 transcription-repair coupling factor; Provisional
Probab=99.68 E-value=4.7e-16 Score=127.53 Aligned_cols=106 Identities=18% Similarity=0.212 Sum_probs=92.0
Q ss_pred HHHHHhhhCCCeEEEEeccHHHHHHHHHHHhhc--CCeEEEEeCCCChHHHHHHHHHHhcCCCceEEEEeccccccccCc
Q psy2046 30 EILPDLKKNGHRVLIFSQFIFVLDILGHYMDIR--GWRHLRLDGATQVSSRQELIDEYNRDQDLFAFLLSTKAGGLGINL 107 (138)
Q Consensus 30 ~ll~~~~~~~~k~iif~~~~~~~~~l~~~l~~~--g~~~~~i~g~~~~~~R~~~~~~F~~~~~~~vll~~~~~~~~Gl~l 107 (138)
.++.++. .+.+++||++....++.+.+.|.+. +..+..+||++++.+|.+++.+|++++.. +|++|+++++|+|+
T Consensus 801 ~il~el~-r~gqv~vf~n~i~~ie~la~~L~~~~p~~~v~~lHG~m~q~eRe~im~~Fr~Gk~~--VLVaTdIierGIDI 877 (1147)
T PRK10689 801 AILREIL-RGGQVYYLYNDVENIQKAAERLAELVPEARIAIGHGQMRERELERVMNDFHHQRFN--VLVCTTIIETGIDI 877 (1147)
T ss_pred HHHHHHh-cCCeEEEEECCHHHHHHHHHHHHHhCCCCcEEEEeCCCCHHHHHHHHHHHHhcCCC--EEEECchhhccccc
Confidence 3444443 4568999999999999999999887 77899999999999999999999998765 78899999999999
Q ss_pred CccCEEEEeCCC-CCccchhHHHHHHhhcCCC
Q psy2046 108 TAADTVIIHDVD-FNPYNDKQAEDRCHRVGQT 138 (138)
Q Consensus 108 ~~~~~vi~~~~~-~~~~~~~Q~~gR~~R~GQt 138 (138)
+++++||+.+++ ++..+|.|++||+||.|++
T Consensus 878 P~v~~VIi~~ad~fglaq~~Qr~GRvGR~g~~ 909 (1147)
T PRK10689 878 PTANTIIIERADHFGLAQLHQLRGRVGRSHHQ 909 (1147)
T ss_pred ccCCEEEEecCCCCCHHHHHHHhhccCCCCCc
Confidence 999999987664 6788899999999999864
No 69
>KOG4284|consensus
Probab=99.68 E-value=5.8e-17 Score=123.69 Aligned_cols=110 Identities=20% Similarity=0.238 Sum_probs=99.0
Q ss_pred hHHHHHHHHHHhhhCCCeEEEEeccHHHHHHHHHHHhhcCCeEEEEeCCCChHHHHHHHHHHhcCCCceEEEEecccccc
Q psy2046 24 KLKKLDEILPDLKKNGHRVLIFSQFIFVLDILGHYMDIRGWRHLRLDGATQVSSRQELIDEYNRDQDLFAFLLSTKAGGL 103 (138)
Q Consensus 24 K~~~l~~ll~~~~~~~~k~iif~~~~~~~~~l~~~l~~~g~~~~~i~g~~~~~~R~~~~~~F~~~~~~~vll~~~~~~~~ 103 (138)
|+..|.++++.+ ...+.||||+...-++-++.+|+..|+++..|.|.|++.+|..+++.+++-. + -+|++|+..++
T Consensus 259 klq~L~~vf~~i--py~QAlVF~~~~sra~~~a~~L~ssG~d~~~ISgaM~Q~~Rl~a~~~lr~f~-~-rILVsTDLtaR 334 (980)
T KOG4284|consen 259 KLQKLTHVFKSI--PYVQALVFCDQISRAEPIATHLKSSGLDVTFISGAMSQKDRLLAVDQLRAFR-V-RILVSTDLTAR 334 (980)
T ss_pred HHHHHHHHHhhC--chHHHHhhhhhhhhhhHHHHHhhccCCCeEEeccccchhHHHHHHHHhhhce-E-EEEEecchhhc
Confidence 666677776654 3458899999999999999999999999999999999999999999998753 3 38889999999
Q ss_pred ccCcCccCEEEEeCCCCCccchhHHHHHHhhcCC
Q psy2046 104 GINLTAADTVIIHDVDFNPYNDKQAEDRCHRVGQ 137 (138)
Q Consensus 104 Gl~l~~~~~vi~~~~~~~~~~~~Q~~gR~~R~GQ 137 (138)
|+|-+.+|-||++|+|-+...|.+||||++|.|-
T Consensus 335 GIDa~~vNLVVNiD~p~d~eTY~HRIGRAgRFG~ 368 (980)
T KOG4284|consen 335 GIDADNVNLVVNIDAPADEETYFHRIGRAGRFGA 368 (980)
T ss_pred cCCccccceEEecCCCcchHHHHHHhhhcccccc
Confidence 9999999999999999999999999999999994
No 70
>PRK05298 excinuclease ABC subunit B; Provisional
Probab=99.68 E-value=5.7e-16 Score=121.53 Aligned_cols=112 Identities=19% Similarity=0.164 Sum_probs=100.7
Q ss_pred CchHHHHHHHHHHhhhCCCeEEEEeccHHHHHHHHHHHhhcCCeEEEEeCCCChHHHHHHHHHHhcCCCceEEEEecccc
Q psy2046 22 SGKLKKLDEILPDLKKNGHRVLIFSQFIFVLDILGHYMDIRGWRHLRLDGATQVSSRQELIDEYNRDQDLFAFLLSTKAG 101 (138)
Q Consensus 22 s~K~~~l~~ll~~~~~~~~k~iif~~~~~~~~~l~~~l~~~g~~~~~i~g~~~~~~R~~~~~~F~~~~~~~vll~~~~~~ 101 (138)
.+++..+.+.|..+.+.+.+++||+++...++.|...|...|+++..+||++++.+|..+++.|+.++.. ++++++.+
T Consensus 429 ~~q~~~L~~~L~~~~~~g~~viIf~~t~~~ae~L~~~L~~~gi~~~~~h~~~~~~~R~~~l~~f~~g~i~--vlV~t~~L 506 (652)
T PRK05298 429 KGQVDDLLSEIRKRVAKGERVLVTTLTKRMAEDLTDYLKELGIKVRYLHSDIDTLERVEIIRDLRLGEFD--VLVGINLL 506 (652)
T ss_pred cccHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHhhcceeEEEEECCCCHHHHHHHHHHHHcCCce--EEEEeCHH
Confidence 4567788888887778899999999999999999999999999999999999999999999999887543 77888999
Q ss_pred ccccCcCccCEEEEeCC-----CCCccchhHHHHHHhhc
Q psy2046 102 GLGINLTAADTVIIHDV-----DFNPYNDKQAEDRCHRV 135 (138)
Q Consensus 102 ~~Gl~l~~~~~vi~~~~-----~~~~~~~~Q~~gR~~R~ 135 (138)
++|++++.++.||++|. |-++..|.|++||++|.
T Consensus 507 ~rGfdlp~v~lVii~d~eifG~~~~~~~yiqr~GR~gR~ 545 (652)
T PRK05298 507 REGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAARN 545 (652)
T ss_pred hCCccccCCcEEEEeCCcccccCCCHHHHHHHhccccCC
Confidence 99999999999999985 45788999999999995
No 71
>KOG1016|consensus
Probab=99.67 E-value=3.5e-17 Score=126.86 Aligned_cols=121 Identities=40% Similarity=0.599 Sum_probs=104.5
Q ss_pred ccccCchHHHHHHHHHHhhhCCCeEEEEeccHHHHHHHHHHHhhc------------------CCeEEEEeCCCChHHHH
Q psy2046 18 LVVESGKLKKLDEILPDLKKNGHRVLIFSQFIFVLDILGHYMDIR------------------GWRHLRLDGATQVSSRQ 79 (138)
Q Consensus 18 ~~~~s~K~~~l~~ll~~~~~~~~k~iif~~~~~~~~~l~~~l~~~------------------g~~~~~i~g~~~~~~R~ 79 (138)
+...++|+-.+.+++.+-..-|+|+|||++....++.|++.|++. ...+..++|.++..+|+
T Consensus 698 vLen~pk~V~~~~~~des~~~g~kil~fSq~l~~Ld~ieeil~krq~pc~~gdnG~~aqkW~~n~sy~rldG~t~a~~re 777 (1387)
T KOG1016|consen 698 VLENGPKIVISLEILDESTQIGEKILIFSQNLTALDMIEEILKKRQIPCKDGDNGCPAQKWEKNRSYLRLDGTTSAADRE 777 (1387)
T ss_pred cccCCCceEEEEeeeccccccCceEEEeecchhHHHHHHHHHhcccccCCCCCCCCchhhhhhccceecccCCcccchHH
Confidence 344556666666666655566889999999999999999999875 23577899999999999
Q ss_pred HHHHHHhcCCCce-EEEEeccccccccCcCccCEEEEeCCCCCccchhHHHHHHhhcCCC
Q psy2046 80 ELIDEYNRDQDLF-AFLLSTKAGGLGINLTAADTVIIHDVDFNPYNDKQAEDRCHRVGQT 138 (138)
Q Consensus 80 ~~~~~F~~~~~~~-vll~~~~~~~~Gl~l~~~~~vi~~~~~~~~~~~~Q~~gR~~R~GQt 138 (138)
+.+++|++..... .++++|.++..|+||..|+.+++||..|||....|+..|++|+||+
T Consensus 778 kLinqfN~e~~lsWlfllstrag~lGinLIsanr~~ifda~wnpchdaqavcRvyrYGQ~ 837 (1387)
T KOG1016|consen 778 KLINQFNSEPGLSWLFLLSTRAGSLGINLISANRCIIFDACWNPCHDAQAVCRVYRYGQQ 837 (1387)
T ss_pred HHHHhccCCCCceeeeeehhccccccceeeccceEEEEEeecCccccchhhhhhhhhcCc
Confidence 9999999877766 6888999999999999999999999999999999999999999996
No 72
>KOG0334|consensus
Probab=99.67 E-value=1.7e-16 Score=125.78 Aligned_cols=126 Identities=18% Similarity=0.192 Sum_probs=112.1
Q ss_pred CCCCCCCcccc-cCchHHHHHHHHHHhhhCCCeEEEEeccHHHHHHHHHHHhhcCCeEEEEeCCCChHHHHHHHHHHhcC
Q psy2046 10 AKYKVPDDLVV-ESGKLKKLDEILPDLKKNGHRVLIFSQFIFVLDILGHYMDIRGWRHLRLDGATQVSSRQELIDEYNRD 88 (138)
Q Consensus 10 ~~~~~~~~~~~-~s~K~~~l~~ll~~~~~~~~k~iif~~~~~~~~~l~~~l~~~g~~~~~i~g~~~~~~R~~~~~~F~~~ 88 (138)
..+.+...... .+.|+..|.++|....+ ..++|||++..+.++.|...|.+.|+++..+||..++.+|...++.|+++
T Consensus 584 k~V~q~v~V~~~e~eKf~kL~eLl~e~~e-~~~tiiFv~~qe~~d~l~~~L~~ag~~~~slHGgv~q~dR~sti~dfK~~ 662 (997)
T KOG0334|consen 584 KEVTQVVRVCAIENEKFLKLLELLGERYE-DGKTIIFVDKQEKADALLRDLQKAGYNCDSLHGGVDQHDRSSTIEDFKNG 662 (997)
T ss_pred ccceEEEEEecCchHHHHHHHHHHHHHhh-cCCEEEEEcCchHHHHHHHHHHhcCcchhhhcCCCchHHHHhHHHHHhcc
Confidence 34444445555 78899999999998766 55999999999999999999999999999999999999999999999998
Q ss_pred CCceEEEEeccccccccCcCccCEEEEeCCCCCccchhHHHHHHhhcCCC
Q psy2046 89 QDLFAFLLSTKAGGLGINLTAADTVIIHDVDFNPYNDKQAEDRCHRVGQT 138 (138)
Q Consensus 89 ~~~~vll~~~~~~~~Gl~l~~~~~vi~~~~~~~~~~~~Q~~gR~~R~GQt 138 (138)
... ||+.|+++++||++.....||+||.|-...+|.+|.||++|.|.+
T Consensus 663 ~~~--LLvaTsvvarGLdv~~l~Lvvnyd~pnh~edyvhR~gRTgragrk 710 (997)
T KOG0334|consen 663 VVN--LLVATSVVARGLDVKELILVVNYDFPNHYEDYVHRVGRTGRAGRK 710 (997)
T ss_pred Cce--EEEehhhhhcccccccceEEEEcccchhHHHHHHHhcccccCCcc
Confidence 654 888999999999999999999999999999999999999998853
No 73
>KOG0343|consensus
Probab=99.67 E-value=4.2e-16 Score=117.23 Aligned_cols=115 Identities=19% Similarity=0.183 Sum_probs=101.3
Q ss_pred cccCchHHHHHHHHHHhhhCCCeEEEEeccHHHHHHHHHHHhhc--CCeEEEEeCCCChHHHHHHHHHHhcCCCceEEEE
Q psy2046 19 VVESGKLKKLDEILPDLKKNGHRVLIFSQFIFVLDILGHYMDIR--GWRHLRLDGATQVSSRQELIDEYNRDQDLFAFLL 96 (138)
Q Consensus 19 ~~~s~K~~~l~~ll~~~~~~~~k~iif~~~~~~~~~l~~~l~~~--g~~~~~i~g~~~~~~R~~~~~~F~~~~~~~vll~ 96 (138)
+.-..|++.|-..|+... ..|.|||..+.+.+..+...+.+. |++...+||.+++..|..+..+|.... .++|.
T Consensus 295 v~l~~Ki~~L~sFI~shl--k~K~iVF~SscKqvkf~~e~F~rlrpg~~l~~L~G~~~Q~~R~ev~~~F~~~~--~~vLF 370 (758)
T KOG0343|consen 295 VPLEDKIDMLWSFIKSHL--KKKSIVFLSSCKQVKFLYEAFCRLRPGIPLLALHGTMSQKKRIEVYKKFVRKR--AVVLF 370 (758)
T ss_pred EehhhHHHHHHHHHHhcc--ccceEEEEehhhHHHHHHHHHHhcCCCCceeeeccchhHHHHHHHHHHHHHhc--ceEEE
Confidence 344578888888887543 458999999999999999998775 899999999999999999999997654 45899
Q ss_pred eccccccccCcCccCEEEEeCCCCCccchhHHHHHHhhcCC
Q psy2046 97 STKAGGLGINLTAADTVIIHDVDFNPYNDKQAEDRCHRVGQ 137 (138)
Q Consensus 97 ~~~~~~~Gl~l~~~~~vi~~~~~~~~~~~~Q~~gR~~R~GQ 137 (138)
+|+++++|||++.+++||.+|.|-+..+|++|.||..|++.
T Consensus 371 ~TDv~aRGLDFpaVdwViQ~DCPedv~tYIHRvGRtAR~~~ 411 (758)
T KOG0343|consen 371 CTDVAARGLDFPAVDWVIQVDCPEDVDTYIHRVGRTARYKE 411 (758)
T ss_pred eehhhhccCCCcccceEEEecCchhHHHHHHHhhhhhcccC
Confidence 99999999999999999999999999999999999999864
No 74
>TIGR00643 recG ATP-dependent DNA helicase RecG.
Probab=99.67 E-value=1.4e-15 Score=119.09 Aligned_cols=112 Identities=15% Similarity=0.248 Sum_probs=91.2
Q ss_pred hHHHHHHHHHHhhhCCCeEEEEeccHH--------HHHHHHHHHhh--cCCeEEEEeCCCChHHHHHHHHHHhcCCCceE
Q psy2046 24 KLKKLDEILPDLKKNGHRVLIFSQFIF--------VLDILGHYMDI--RGWRHLRLDGATQVSSRQELIDEYNRDQDLFA 93 (138)
Q Consensus 24 K~~~l~~ll~~~~~~~~k~iif~~~~~--------~~~~l~~~l~~--~g~~~~~i~g~~~~~~R~~~~~~F~~~~~~~v 93 (138)
+...+.+.+.....++.+++||++..+ .+..+.+.|.. .++.+..+||++++.+|.+++++|++++..
T Consensus 433 ~~~~~~~~i~~~l~~g~q~~v~~~~i~~s~~~~~~~a~~~~~~L~~~~~~~~v~~lHG~m~~~eR~~i~~~F~~g~~~-- 510 (630)
T TIGR00643 433 EKDIVYEFIEEEIAKGRQAYVVYPLIEESEKLDLKAAEALYERLKKAFPKYNVGLLHGRMKSDEKEAVMEEFREGEVD-- 510 (630)
T ss_pred hHHHHHHHHHHHHHhCCcEEEEEccccccccchHHHHHHHHHHHHhhCCCCcEEEEeCCCCHHHHHHHHHHHHcCCCC--
Confidence 335566666655567889999998652 34455555654 367899999999999999999999988654
Q ss_pred EEEeccccccccCcCccCEEEEeCCC-CCccchhHHHHHHhhcCC
Q psy2046 94 FLLSTKAGGLGINLTAADTVIIHDVD-FNPYNDKQAEDRCHRVGQ 137 (138)
Q Consensus 94 ll~~~~~~~~Gl~l~~~~~vi~~~~~-~~~~~~~Q~~gR~~R~GQ 137 (138)
+|++|++.++|+|+++++.||+++++ ++...+.|+.||++|.|+
T Consensus 511 ILVaT~vie~GvDiP~v~~VIi~~~~r~gls~lhQ~~GRvGR~g~ 555 (630)
T TIGR00643 511 ILVATTVIEVGVDVPNATVMVIEDAERFGLSQLHQLRGRVGRGDH 555 (630)
T ss_pred EEEECceeecCcccCCCcEEEEeCCCcCCHHHHHHHhhhcccCCC
Confidence 88889999999999999999999988 467889999999999885
No 75
>KOG0350|consensus
Probab=99.66 E-value=3.3e-16 Score=116.45 Aligned_cols=112 Identities=18% Similarity=0.237 Sum_probs=96.4
Q ss_pred chHHHHHHHHHHhhhCCCeEEEEeccHHHHHHHHHHHh----hcCCeEEEEeCCCChHHHHHHHHHHhcCCCceEEEEec
Q psy2046 23 GKLKKLDEILPDLKKNGHRVLIFSQFIFVLDILGHYMD----IRGWRHLRLDGATQVSSRQELIDEYNRDQDLFAFLLST 98 (138)
Q Consensus 23 ~K~~~l~~ll~~~~~~~~k~iif~~~~~~~~~l~~~l~----~~g~~~~~i~g~~~~~~R~~~~~~F~~~~~~~vll~~~ 98 (138)
-|...+..+|. ..+..++|+|+++......+...|+ ....++..++|+.+.+.|.+.+++|..++.. +|+++
T Consensus 415 ~kpl~~~~lI~--~~k~~r~lcf~~S~~sa~Rl~~~L~v~~~~~~~~~s~~t~~l~~k~r~k~l~~f~~g~i~--vLIcS 490 (620)
T KOG0350|consen 415 FKPLAVYALIT--SNKLNRTLCFVNSVSSANRLAHVLKVEFCSDNFKVSEFTGQLNGKRRYKMLEKFAKGDIN--VLICS 490 (620)
T ss_pred cchHhHHHHHH--HhhcceEEEEecchHHHHHHHHHHHHHhccccchhhhhhhhhhHHHHHHHHHHHhcCCce--EEEeh
Confidence 35555666665 3456799999999999888888776 3356677899999999999999999988654 78889
Q ss_pred cccccccCcCccCEEEEeCCCCCccchhHHHHHHhhcCCC
Q psy2046 99 KAGGLGINLTAADTVIIHDVDFNPYNDKQAEDRCHRVGQT 138 (138)
Q Consensus 99 ~~~~~Gl~l~~~~~vi~~~~~~~~~~~~Q~~gR~~R~GQt 138 (138)
+++++|+|+-+.++||+||+|.+...|+||+||..|.||.
T Consensus 491 D~laRGiDv~~v~~VINYd~P~~~ktyVHR~GRTARAgq~ 530 (620)
T KOG0350|consen 491 DALARGIDVNDVDNVINYDPPASDKTYVHRAGRTARAGQD 530 (620)
T ss_pred hhhhcCCcccccceEeecCCCchhhHHHHhhcccccccCC
Confidence 9999999999999999999999999999999999999984
No 76
>PRK12906 secA preprotein translocase subunit SecA; Reviewed
Probab=99.66 E-value=7.9e-16 Score=121.26 Aligned_cols=114 Identities=19% Similarity=0.261 Sum_probs=101.0
Q ss_pred ccCchHHHHHHHHHHhhhCCCeEEEEeccHHHHHHHHHHHhhcCCeEEEEeCCCChHHHHHHHHHHhcCCCceEEEEecc
Q psy2046 20 VESGKLKKLDEILPDLKKNGHRVLIFSQFIFVLDILGHYMDIRGWRHLRLDGATQVSSRQELIDEYNRDQDLFAFLLSTK 99 (138)
Q Consensus 20 ~~s~K~~~l~~ll~~~~~~~~k~iif~~~~~~~~~l~~~l~~~g~~~~~i~g~~~~~~R~~~~~~F~~~~~~~vll~~~~ 99 (138)
....|..++.+.+......+.++||||.++...+.|+..|.+.|+++..+||.....++..+..+++.+. ++++|+
T Consensus 421 t~~~K~~al~~~i~~~~~~g~pvLI~t~si~~se~ls~~L~~~gi~~~~Lna~~~~~Ea~ii~~ag~~g~----VtIATn 496 (796)
T PRK12906 421 TLDSKFNAVVKEIKERHAKGQPVLVGTVAIESSERLSHLLDEAGIPHAVLNAKNHAKEAEIIMNAGQRGA----VTIATN 496 (796)
T ss_pred CHHHHHHHHHHHHHHHHhCCCCEEEEeCcHHHHHHHHHHHHHCCCCeeEecCCcHHHHHHHHHhcCCCce----EEEEec
Confidence 3456888999999887888999999999999999999999999999999999988777776777665543 788899
Q ss_pred ccccccCcC---ccC-----EEEEeCCCCCccchhHHHHHHhhcCC
Q psy2046 100 AGGLGINLT---AAD-----TVIIHDVDFNPYNDKQAEDRCHRVGQ 137 (138)
Q Consensus 100 ~~~~Gl~l~---~~~-----~vi~~~~~~~~~~~~Q~~gR~~R~GQ 137 (138)
.+|+|.|+. .+. |||.++.|-+...+.|+.||++|.|.
T Consensus 497 mAGRGtDI~l~~~V~~~GGLhVI~te~pes~ri~~Ql~GRtGRqG~ 542 (796)
T PRK12906 497 MAGRGTDIKLGPGVKELGGLAVIGTERHESRRIDNQLRGRSGRQGD 542 (796)
T ss_pred cccCCCCCCCCcchhhhCCcEEEeeecCCcHHHHHHHhhhhccCCC
Confidence 999999994 677 99999999999999999999999996
No 77
>KOG0339|consensus
Probab=99.65 E-value=6e-16 Score=115.51 Aligned_cols=114 Identities=21% Similarity=0.350 Sum_probs=102.4
Q ss_pred cCchHHHHHHHHHHhhhCCCeEEEEeccHHHHHHHHHHHhhcCCeEEEEeCCCChHHHHHHHHHHhcCCCceEEEEeccc
Q psy2046 21 ESGKLKKLDEILPDLKKNGHRVLIFSQFIFVLDILGHYMDIRGWRHLRLDGATQVSSRQELIDEYNRDQDLFAFLLSTKA 100 (138)
Q Consensus 21 ~s~K~~~l~~ll~~~~~~~~k~iif~~~~~~~~~l~~~l~~~g~~~~~i~g~~~~~~R~~~~~~F~~~~~~~vll~~~~~ 100 (138)
...|+..|.+-|......| ++|+|+-.....+.+...|+-.|++++.+||++.+.+|.+.+.+|+.+..+ +|+.|++
T Consensus 451 ~~~Kl~wl~~~L~~f~S~g-kvlifVTKk~~~e~i~a~Lklk~~~v~llhgdkdqa~rn~~ls~fKkk~~~--VlvatDv 527 (731)
T KOG0339|consen 451 EEKKLNWLLRHLVEFSSEG-KVLIFVTKKADAEEIAANLKLKGFNVSLLHGDKDQAERNEVLSKFKKKRKP--VLVATDV 527 (731)
T ss_pred cHHHHHHHHHHhhhhccCC-cEEEEEeccCCHHHHHHHhccccceeeeecCchhhHHHHHHHHHHhhcCCc--eEEEeeH
Confidence 4467887777666554444 899999999999999999999999999999999999999999999987665 7888999
Q ss_pred cccccCcCccCEEEEeCCCCCccchhHHHHHHhhcCC
Q psy2046 101 GGLGINLTAADTVIIHDVDFNPYNDKQAEDRCHRVGQ 137 (138)
Q Consensus 101 ~~~Gl~l~~~~~vi~~~~~~~~~~~~Q~~gR~~R~GQ 137 (138)
+.+|++++...+||+||.--+...+.||+||.+|.|.
T Consensus 528 aargldI~~ikTVvnyD~ardIdththrigrtgRag~ 564 (731)
T KOG0339|consen 528 AARGLDIPSIKTVVNYDFARDIDTHTHRIGRTGRAGE 564 (731)
T ss_pred hhcCCCccccceeecccccchhHHHHHHhhhcccccc
Confidence 9999999999999999999999999999999999985
No 78
>KOG0354|consensus
Probab=99.63 E-value=3.3e-15 Score=116.18 Aligned_cols=113 Identities=24% Similarity=0.282 Sum_probs=96.7
Q ss_pred ccCchHHHHHHHHHHhhhC--CCeEEEEeccHHHHHHHHHHHhh---cCCeEEEEeC--------CCChHHHHHHHHHHh
Q psy2046 20 VESGKLKKLDEILPDLKKN--GHRVLIFSQFIFVLDILGHYMDI---RGWRHLRLDG--------ATQVSSRQELIDEYN 86 (138)
Q Consensus 20 ~~s~K~~~l~~ll~~~~~~--~~k~iif~~~~~~~~~l~~~l~~---~g~~~~~i~g--------~~~~~~R~~~~~~F~ 86 (138)
...+|+..+.+.+.+..+. +.++|||+.++..++.|..+|.. .|+....+-| +|++.+..+.+++|+
T Consensus 392 ~~npkle~l~~~l~e~f~~~~dsR~IIFve~R~sa~~l~~~l~~~~~~~ir~~~fiGq~~s~~~~gmtqk~Q~evl~~Fr 471 (746)
T KOG0354|consen 392 KENPKLEKLVEILVEQFEQNPDSRTIIFVETRESALALKKWLLQLHELGIKAEIFIGQGKSTQSTGMTQKEQKEVLDKFR 471 (746)
T ss_pred ccChhHHHHHHHHHHHhhcCCCccEEEEEehHHHHHHHHHHHHhhhhcccccceeeeccccccccccCHHHHHHHHHHHh
Confidence 4578999999999887554 56999999999999999999983 2445444444 488999999999999
Q ss_pred cCCCceEEEEeccccccccCcCccCEEEEeCCCCCccchhHHHHHHhhc
Q psy2046 87 RDQDLFAFLLSTKAGGLGINLTAADTVIIHDVDFNPYNDKQAEDRCHRV 135 (138)
Q Consensus 87 ~~~~~~vll~~~~~~~~Gl~l~~~~~vi~~~~~~~~~~~~Q~~gR~~R~ 135 (138)
+|... +|++|.+|.+|||++.++-||.||..-||-..+||+|| +|.
T Consensus 472 ~G~~N--vLVATSV~EEGLDI~ec~lVIcYd~~snpIrmIQrrGR-gRa 517 (746)
T KOG0354|consen 472 DGEIN--VLVATSVAEEGLDIGECNLVICYDYSSNPIRMVQRRGR-GRA 517 (746)
T ss_pred CCCcc--EEEEecchhccCCcccccEEEEecCCccHHHHHHHhcc-ccc
Confidence 98654 78889999999999999999999999999999999999 885
No 79
>TIGR02621 cas3_GSU0051 CRISPR-associated helicase Cas3, Anaes-subtype. This model describes a CRISPR-associated putative DEAH-box helicase, or Cas3, of a subtype found in Actinomyces naeslundii MG1, Geobacter sulfurreducens PCA, Gemmata obscuriglobus UQM 2246, and Desulfotalea psychrophila. This protein includes both DEAH and HD motifs.
Probab=99.63 E-value=3.6e-15 Score=118.35 Aligned_cols=109 Identities=21% Similarity=0.324 Sum_probs=87.7
Q ss_pred hHHHHHHHHHH-hhhCCCeEEEEeccHHHHHHHHHHHhhcCCeEEEEeCCCChHHHH-----HHHHHHhc----CC----
Q psy2046 24 KLKKLDEILPD-LKKNGHRVLIFSQFIFVLDILGHYMDIRGWRHLRLDGATQVSSRQ-----ELIDEYNR----DQ---- 89 (138)
Q Consensus 24 K~~~l~~ll~~-~~~~~~k~iif~~~~~~~~~l~~~l~~~g~~~~~i~g~~~~~~R~-----~~~~~F~~----~~---- 89 (138)
|+..+...+.. +...+.++|||++++..++.+...|+..++ ..+||.+++.+|. +++++|++ ++
T Consensus 256 Kl~~lv~~L~~ll~e~g~~vLVF~NTv~~Aq~L~~~L~~~g~--~lLHG~m~q~dR~~~~~~~il~~Fk~~~~~g~~~~~ 333 (844)
T TIGR02621 256 FLSTMVKELNLLMKDSGGAILVFCRTVKHVRKVFAKLPKEKF--ELLTGTLRGAERDDLVKKEIFNRFLPQMLSGSRARP 333 (844)
T ss_pred HHHHHHHHHHHHHhhCCCcEEEEECCHHHHHHHHHHHHhcCC--eEeeCCCCHHHHhhHHHHHHHHHHhccccccccccc
Confidence 44444433332 234567899999999999999999998876 8999999999999 78999986 32
Q ss_pred -CceEEEEeccccccccCcCccCEEEEeCCCCCccchhHHHHHHhhcCC
Q psy2046 90 -DLFAFLLSTKAGGLGINLTAADTVIIHDVDFNPYNDKQAEDRCHRVGQ 137 (138)
Q Consensus 90 -~~~vll~~~~~~~~Gl~l~~~~~vi~~~~~~~~~~~~Q~~gR~~R~GQ 137 (138)
....+|++|+++++|||+.. ++||+...|+ ..|+||+||++|.|.
T Consensus 334 ~~g~~ILVATdVaerGLDId~-d~VI~d~aP~--esyIQRiGRtgR~G~ 379 (844)
T TIGR02621 334 QQGTVYLVCTSAGEVGVNISA-DHLVCDLAPF--ESMQQRFGRVNRFGE 379 (844)
T ss_pred cccceEEeccchhhhcccCCc-ceEEECCCCH--HHHHHHhcccCCCCC
Confidence 11347899999999999975 8888877664 789999999999986
No 80
>PRK12900 secA preprotein translocase subunit SecA; Reviewed
Probab=99.60 E-value=6.8e-15 Score=117.41 Aligned_cols=113 Identities=18% Similarity=0.236 Sum_probs=99.7
Q ss_pred cCchHHHHHHHHHHhhhCCCeEEEEeccHHHHHHHHHHHhhcCCeEEEEeCCCChHHHHHHHHHHhcCCCceEEEEeccc
Q psy2046 21 ESGKLKKLDEILPDLKKNGHRVLIFSQFIFVLDILGHYMDIRGWRHLRLDGATQVSSRQELIDEYNRDQDLFAFLLSTKA 100 (138)
Q Consensus 21 ~s~K~~~l~~ll~~~~~~~~k~iif~~~~~~~~~l~~~l~~~g~~~~~i~g~~~~~~R~~~~~~F~~~~~~~vll~~~~~ 100 (138)
...|..++.+.+......+.++||||.++...+.|+..|...|+++..+|+ .+.+|+..+-+|..++.. ++++|+.
T Consensus 580 ~~eK~~Ali~~I~~~~~~grpVLIft~Sve~sE~Ls~~L~~~gI~h~vLna--kq~~REa~Iia~AG~~g~--VtIATNM 655 (1025)
T PRK12900 580 RREKYNAIVLKVEELQKKGQPVLVGTASVEVSETLSRMLRAKRIAHNVLNA--KQHDREAEIVAEAGQKGA--VTIATNM 655 (1025)
T ss_pred HHHHHHHHHHHHHHHhhCCCCEEEEeCcHHHHHHHHHHHHHcCCCceeecC--CHHHhHHHHHHhcCCCCe--EEEeccC
Confidence 346899999999888888999999999999999999999999999999997 578999999999876554 8889999
Q ss_pred cccccCcCccC--------EEEEeCCCCCccchhHHHHHHhhcCC
Q psy2046 101 GGLGINLTAAD--------TVIIHDVDFNPYNDKQAEDRCHRVGQ 137 (138)
Q Consensus 101 ~~~Gl~l~~~~--------~vi~~~~~~~~~~~~Q~~gR~~R~GQ 137 (138)
+|+|+|+.-.. +||..+.|-+...+.|++||++|.|.
T Consensus 656 AGRGtDIkl~~~V~~vGGL~VIgterhes~Rid~Ql~GRtGRqGd 700 (1025)
T PRK12900 656 AGRGTDIKLGEGVRELGGLFILGSERHESRRIDRQLRGRAGRQGD 700 (1025)
T ss_pred cCCCCCcCCccchhhhCCceeeCCCCCchHHHHHHHhhhhhcCCC
Confidence 99999998333 33777888888899999999999996
No 81
>PRK09751 putative ATP-dependent helicase Lhr; Provisional
Probab=99.60 E-value=6.6e-15 Score=122.40 Aligned_cols=97 Identities=14% Similarity=0.095 Sum_probs=85.8
Q ss_pred hCCCeEEEEeccHHHHHHHHHHHhhcC---------------------------------CeEEEEeCCCChHHHHHHHH
Q psy2046 37 KNGHRVLIFSQFIFVLDILGHYMDIRG---------------------------------WRHLRLDGATQVSSRQELID 83 (138)
Q Consensus 37 ~~~~k~iif~~~~~~~~~l~~~l~~~g---------------------------------~~~~~i~g~~~~~~R~~~~~ 83 (138)
..+.++|||++++..++.+...|++.. ..+..+||++++++|..+.+
T Consensus 242 ~~~~stLVFvNSR~~AE~La~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ia~~HHGsLSkeeR~~IE~ 321 (1490)
T PRK09751 242 LRHRSTIVFTNSRGLAEKLTARLNELYAARLQRSPSIAVDAAHFESTSGATSNRVQSSDVFIARSHHGSVSKEQRAITEQ 321 (1490)
T ss_pred hcCCCEEEECCCHHHHHHHHHHHHHhhhhhccccccccchhhhhhhccccchhccccccceeeeeccccCCHHHHHHHHH
Confidence 456799999999999999998887531 12467899999999999999
Q ss_pred HHhcCCCceEEEEeccccccccCcCccCEEEEeCCCCCccchhHHHHHHhhc
Q psy2046 84 EYNRDQDLFAFLLSTKAGGLGINLTAADTVIIHDVDFNPYNDKQAEDRCHRV 135 (138)
Q Consensus 84 ~F~~~~~~~vll~~~~~~~~Gl~l~~~~~vi~~~~~~~~~~~~Q~~gR~~R~ 135 (138)
.|+++... +|++|++++.|||++.+++||+++.|.+...|.||+||++|.
T Consensus 322 ~fK~G~Lr--vLVATssLELGIDIg~VDlVIq~gsP~sVas~LQRiGRAGR~ 371 (1490)
T PRK09751 322 ALKSGELR--CVVATSSLELGIDMGAVDLVIQVATPLSVASGLQRIGRAGHQ 371 (1490)
T ss_pred HHHhCCce--EEEeCcHHHccCCcccCCEEEEeCCCCCHHHHHHHhCCCCCC
Confidence 99998653 788999999999999999999999999999999999999984
No 82
>KOG1123|consensus
Probab=99.59 E-value=1.5e-14 Score=108.15 Aligned_cols=113 Identities=19% Similarity=0.325 Sum_probs=96.5
Q ss_pred cccccCchHHHHHHHHHHhhhCCCeEEEEeccHHHHHHHHHHHhhcCCeEEEEeCCCChHHHHHHHHHHhcCCCceEEEE
Q psy2046 17 DLVVESGKLKKLDEILPDLKKNGHRVLIFSQFIFVLDILGHYMDIRGWRHLRLDGATQVSSRQELIDEYNRDQDLFAFLL 96 (138)
Q Consensus 17 ~~~~~s~K~~~l~~ll~~~~~~~~k~iif~~~~~~~~~l~~~l~~~g~~~~~i~g~~~~~~R~~~~~~F~~~~~~~vll~ 96 (138)
..++.+.|+..+.-+|+.....|+|+|||++..-.+...+-.| |.+ .|+|.+++.+|.++++.|+.++.++.+++
T Consensus 521 LyvMNP~KFraCqfLI~~HE~RgDKiIVFsDnvfALk~YAikl---~Kp--fIYG~Tsq~ERm~ILqnFq~n~~vNTIFl 595 (776)
T KOG1123|consen 521 LYVMNPNKFRACQFLIKFHERRGDKIIVFSDNVFALKEYAIKL---GKP--FIYGPTSQNERMKILQNFQTNPKVNTIFL 595 (776)
T ss_pred eeecCcchhHHHHHHHHHHHhcCCeEEEEeccHHHHHHHHHHc---CCc--eEECCCchhHHHHHHHhcccCCccceEEE
Confidence 4577889999999999988888999999998876555555444 444 68999999999999999998888887777
Q ss_pred eccccccccCcCccCEEEEeCCCC-CccchhHHHHHHhhc
Q psy2046 97 STKAGGLGINLTAADTVIIHDVDF-NPYNDKQAEDRCHRV 135 (138)
Q Consensus 97 ~~~~~~~Gl~l~~~~~vi~~~~~~-~~~~~~Q~~gR~~R~ 135 (138)
| +++...+|||.|+.+|..+... +..++.||.||+-|.
T Consensus 596 S-KVgDtSiDLPEAnvLIQISSH~GSRRQEAQRLGRILRA 634 (776)
T KOG1123|consen 596 S-KVGDTSIDLPEANVLIQISSHGGSRRQEAQRLGRILRA 634 (776)
T ss_pred e-eccCccccCCcccEEEEEcccccchHHHHHHHHHHHHH
Confidence 6 9999999999999999998886 567888999999885
No 83
>COG1061 SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair]
Probab=99.59 E-value=2.2e-14 Score=108.34 Aligned_cols=110 Identities=18% Similarity=0.211 Sum_probs=96.6
Q ss_pred CchHHHHHHHHHHhhhCCCeEEEEeccHHHHHHHHHHHhhcCCeEEEEeCCCChHHHHHHHHHHhcCCCceEEEEecccc
Q psy2046 22 SGKLKKLDEILPDLKKNGHRVLIFSQFIFVLDILGHYMDIRGWRHLRLDGATQVSSRQELIDEYNRDQDLFAFLLSTKAG 101 (138)
Q Consensus 22 s~K~~~l~~ll~~~~~~~~k~iif~~~~~~~~~l~~~l~~~g~~~~~i~g~~~~~~R~~~~~~F~~~~~~~vll~~~~~~ 101 (138)
..|+..+..++.... .+.+++||+.+....+.+...+...|+ +..++|.++..+|+.+++.|+.++ . .+|++++++
T Consensus 267 ~~~~~~~~~~~~~~~-~~~~~lif~~~~~~a~~i~~~~~~~~~-~~~it~~t~~~eR~~il~~fr~g~-~-~~lv~~~vl 342 (442)
T COG1061 267 ERKIAAVRGLLLKHA-RGDKTLIFASDVEHAYEIAKLFLAPGI-VEAITGETPKEEREAILERFRTGG-I-KVLVTVKVL 342 (442)
T ss_pred HHHHHHHHHHHHHhc-CCCcEEEEeccHHHHHHHHHHhcCCCc-eEEEECCCCHHHHHHHHHHHHcCC-C-CEEEEeeec
Confidence 345555556655443 678999999999999999999998888 889999999999999999999876 3 377788999
Q ss_pred ccccCcCccCEEEEeCCCCCccchhHHHHHHhhc
Q psy2046 102 GLGINLTAADTVIIHDVDFNPYNDKQAEDRCHRV 135 (138)
Q Consensus 102 ~~Gl~l~~~~~vi~~~~~~~~~~~~Q~~gR~~R~ 135 (138)
.+|+|+|+++.+|+..++-++..+.|++||+.|.
T Consensus 343 ~EGvDiP~~~~~i~~~~t~S~~~~~Q~lGR~LR~ 376 (442)
T COG1061 343 DEGVDIPDADVLIILRPTGSRRLFIQRLGRGLRP 376 (442)
T ss_pred cceecCCCCcEEEEeCCCCcHHHHHHHhhhhccC
Confidence 9999999999999999999999999999999993
No 84
>PRK02362 ski2-like helicase; Provisional
Probab=99.59 E-value=1.1e-14 Score=116.07 Aligned_cols=107 Identities=17% Similarity=0.108 Sum_probs=86.2
Q ss_pred HHHHHHhhhCCCeEEEEeccHHHHHHHHHHHhhc------------------------------------CCeEEEEeCC
Q psy2046 29 DEILPDLKKNGHRVLIFSQFIFVLDILGHYMDIR------------------------------------GWRHLRLDGA 72 (138)
Q Consensus 29 ~~ll~~~~~~~~k~iif~~~~~~~~~l~~~l~~~------------------------------------g~~~~~i~g~ 72 (138)
..++.+....+.++|||++++..++.++..|... ...+..+||+
T Consensus 233 ~~~~~~~~~~~~~~LVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~L~~~l~~gva~hHag 312 (737)
T PRK02362 233 LNLVLDTLEEGGQCLVFVSSRRNAEGFAKRAASALKKTLTAAERAELAELAEEIREVSDTETSKDLADCVAKGAAFHHAG 312 (737)
T ss_pred HHHHHHHHHcCCCeEEEEeCHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhccCccccHHHHHHHHhCEEeecCC
Confidence 3444444456789999999998887777666432 1357789999
Q ss_pred CChHHHHHHHHHHhcCCCceEEEEeccccccccCcCccCEEEE----eC-----CCCCccchhHHHHHHhhcCC
Q psy2046 73 TQVSSRQELIDEYNRDQDLFAFLLSTKAGGLGINLTAADTVII----HD-----VDFNPYNDKQAEDRCHRVGQ 137 (138)
Q Consensus 73 ~~~~~R~~~~~~F~~~~~~~vll~~~~~~~~Gl~l~~~~~vi~----~~-----~~~~~~~~~Q~~gR~~R~GQ 137 (138)
+++.+|..+.+.|++|... +|++|++++.|+|+|..+.||. || .|.+..+|.|++||+||.|.
T Consensus 313 l~~~eR~~ve~~Fr~G~i~--VLvaT~tla~GvnlPa~~VVI~~~~~yd~~~g~~~~s~~~y~Qm~GRAGR~g~ 384 (737)
T PRK02362 313 LSREHRELVEDAFRDRLIK--VISSTPTLAAGLNLPARRVIIRDYRRYDGGAGMQPIPVLEYHQMAGRAGRPGL 384 (737)
T ss_pred CCHHHHHHHHHHHHcCCCe--EEEechhhhhhcCCCceEEEEecceeecCCCCceeCCHHHHHHHhhcCCCCCC
Confidence 9999999999999988643 7888999999999998887775 55 46677899999999999985
No 85
>KOG0349|consensus
Probab=99.54 E-value=3.1e-14 Score=105.02 Aligned_cols=95 Identities=19% Similarity=0.271 Sum_probs=87.0
Q ss_pred CCeEEEEeccHHHHHHHHHHHhhcC---CeEEEEeCCCChHHHHHHHHHHhcCCCceEEEEeccccccccCcCccCEEEE
Q psy2046 39 GHRVLIFSQFIFVLDILGHYMDIRG---WRHLRLDGATQVSSRQELIDEYNRDQDLFAFLLSTKAGGLGINLTAADTVII 115 (138)
Q Consensus 39 ~~k~iif~~~~~~~~~l~~~l~~~g---~~~~~i~g~~~~~~R~~~~~~F~~~~~~~vll~~~~~~~~Gl~l~~~~~vi~ 115 (138)
.+|.||||..+.+.|.|+.++...| ++++++||...+.+|.+.++.|+..... +|++|+++++|+|+++...+|+
T Consensus 505 mdkaiifcrtk~dcDnLer~~~qkgg~~~scvclhgDrkP~Erk~nle~Fkk~dvk--flictdvaargldi~g~p~~in 582 (725)
T KOG0349|consen 505 MDKAIIFCRTKQDCDNLERMMNQKGGKHYSCVCLHGDRKPDERKANLESFKKFDVK--FLICTDVAARGLDITGLPFMIN 582 (725)
T ss_pred cCceEEEEeccccchHHHHHHHHcCCccceeEEEecCCChhHHHHHHHhhhhcCeE--EEEEehhhhccccccCCceEEE
Confidence 4799999999999999999998875 5689999999999999999999876432 8999999999999999999999
Q ss_pred eCCCCCccchhHHHHHHhhc
Q psy2046 116 HDVDFNPYNDKQAEDRCHRV 135 (138)
Q Consensus 116 ~~~~~~~~~~~Q~~gR~~R~ 135 (138)
...|-+...|.+||||++|.
T Consensus 583 vtlpd~k~nyvhrigrvgra 602 (725)
T KOG0349|consen 583 VTLPDDKTNYVHRIGRVGRA 602 (725)
T ss_pred EecCcccchhhhhhhccchh
Confidence 99999999999999999875
No 86
>COG1202 Superfamily II helicase, archaea-specific [General function prediction only]
Probab=99.53 E-value=1.1e-14 Score=110.39 Aligned_cols=113 Identities=15% Similarity=0.192 Sum_probs=97.7
Q ss_pred cCchHHHHHHHHHHhhhC----C--CeEEEEeccHHHHHHHHHHHhhcCCeEEEEeCCCChHHHHHHHHHHhcCCCceEE
Q psy2046 21 ESGKLKKLDEILPDLKKN----G--HRVLIFSQFIFVLDILGHYMDIRGWRHLRLDGATQVSSRQELIDEYNRDQDLFAF 94 (138)
Q Consensus 21 ~s~K~~~l~~ll~~~~~~----~--~k~iif~~~~~~~~~l~~~l~~~g~~~~~i~g~~~~~~R~~~~~~F~~~~~~~vl 94 (138)
.+.|++.+.++++.-... | .++|||++++.-++.|+.+|...|++...+|++++..+|..+-..|.++.-. .
T Consensus 416 e~eK~~ii~~L~k~E~~~~sskg~rGQtIVFT~SRrr~h~lA~~L~~kG~~a~pYHaGL~y~eRk~vE~~F~~q~l~--~ 493 (830)
T COG1202 416 ESEKWDIIARLVKREFSTESSKGYRGQTIVFTYSRRRCHELADALTGKGLKAAPYHAGLPYKERKSVERAFAAQELA--A 493 (830)
T ss_pred chHHHHHHHHHHHHHHhhhhccCcCCceEEEecchhhHHHHHHHhhcCCcccccccCCCcHHHHHHHHHHHhcCCcc--e
Confidence 678999888888754322 2 4799999999999999999999999999999999999999999999988665 7
Q ss_pred EEeccccccccCcCccCEEEE----eCCCC-CccchhHHHHHHhhcC
Q psy2046 95 LLSTKAGGLGINLTAADTVII----HDVDF-NPYNDKQAEDRCHRVG 136 (138)
Q Consensus 95 l~~~~~~~~Gl~l~~~~~vi~----~~~~~-~~~~~~Q~~gR~~R~G 136 (138)
+++|.+.+.|+|+| |+.||+ +...| ++..+.|..||+||+|
T Consensus 494 VVTTAAL~AGVDFP-ASQVIFEsLaMG~~WLs~~EF~QM~GRAGRp~ 539 (830)
T COG1202 494 VVTTAALAAGVDFP-ASQVIFESLAMGIEWLSVREFQQMLGRAGRPD 539 (830)
T ss_pred EeehhhhhcCCCCc-hHHHHHHHHHcccccCCHHHHHHHhcccCCCC
Confidence 88899999999998 667766 34455 8999999999999987
No 87
>TIGR01970 DEAH_box_HrpB ATP-dependent helicase HrpB. This model represents HrpB, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria, but also in a few species of other lineages. The member from Rhizobium meliloti has been designated HelO. HrpB is typically about 800 residues in length, while its paralog HrpA (TIGR01967), also uncharacterized, is about 1300 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=99.53 E-value=8.5e-14 Score=111.33 Aligned_cols=97 Identities=14% Similarity=0.171 Sum_probs=83.9
Q ss_pred CCCeEEEEeccHHHHHHHHHHHhh---cCCeEEEEeCCCChHHHHHHHHHHhcCCCceEEEEeccccccccCcCccCEEE
Q psy2046 38 NGHRVLIFSQFIFVLDILGHYMDI---RGWRHLRLDGATQVSSRQELIDEYNRDQDLFAFLLSTKAGGLGINLTAADTVI 114 (138)
Q Consensus 38 ~~~k~iif~~~~~~~~~l~~~l~~---~g~~~~~i~g~~~~~~R~~~~~~F~~~~~~~vll~~~~~~~~Gl~l~~~~~vi 114 (138)
.+.++|||++....++.+...|+. .++.+..+||++++++|.++++.|.++.. + +|++|+++++||+++++++||
T Consensus 208 ~~g~iLVFlpg~~eI~~l~~~L~~~~~~~~~v~pLHg~L~~~eq~~~~~~~~~G~r-k-VlVATnIAErgItIp~V~~VI 285 (819)
T TIGR01970 208 ETGSILVFLPGQAEIRRVQEQLAERLDSDVLICPLYGELSLAAQDRAIKPDPQGRR-K-VVLATNIAETSLTIEGIRVVI 285 (819)
T ss_pred cCCcEEEEECCHHHHHHHHHHHHhhcCCCcEEEEecCCCCHHHHHHHHhhcccCCe-E-EEEecchHhhcccccCceEEE
Confidence 356899999999999999999987 47889999999999999999999987743 3 778999999999999999999
Q ss_pred EeCCC----CCccc--------------hhHHHHHHhhcC
Q psy2046 115 IHDVD----FNPYN--------------DKQAEDRCHRVG 136 (138)
Q Consensus 115 ~~~~~----~~~~~--------------~~Q~~gR~~R~G 136 (138)
.++.+ +++.. +.||.||+||.+
T Consensus 286 D~Gl~r~~~yd~~~g~~~L~~~~iSkasa~QR~GRAGR~~ 325 (819)
T TIGR01970 286 DSGLARVARFDPKTGITRLETVRISQASATQRAGRAGRLE 325 (819)
T ss_pred EcCcccccccccccCCceeeEEEECHHHHHhhhhhcCCCC
Confidence 98775 34443 689999999974
No 88
>PRK01172 ski2-like helicase; Provisional
Probab=99.52 E-value=1.2e-13 Score=109.08 Aligned_cols=107 Identities=17% Similarity=0.198 Sum_probs=84.6
Q ss_pred HHHHHHHhhhCCCeEEEEeccHHHHHHHHHHHhhc-------------------------CCeEEEEeCCCChHHHHHHH
Q psy2046 28 LDEILPDLKKNGHRVLIFSQFIFVLDILGHYMDIR-------------------------GWRHLRLDGATQVSSRQELI 82 (138)
Q Consensus 28 l~~ll~~~~~~~~k~iif~~~~~~~~~l~~~l~~~-------------------------g~~~~~i~g~~~~~~R~~~~ 82 (138)
+..++.+...++.++|||++....++.++..|... ...+..+||++++++|..+.
T Consensus 225 ~~~~i~~~~~~~~~vLVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~gv~~~hagl~~~eR~~ve 304 (674)
T PRK01172 225 INSLIKETVNDGGQVLVFVSSRKNAEDYAEMLIQHFPEFNDFKVSSENNNVYDDSLNEMLPHGVAFHHAGLSNEQRRFIE 304 (674)
T ss_pred HHHHHHHHHhCCCcEEEEeccHHHHHHHHHHHHHhhhhcccccccccccccccHHHHHHHhcCEEEecCCCCHHHHHHHH
Confidence 44556655567789999999999988888777543 11367789999999999999
Q ss_pred HHHhcCCCceEEEEeccccccccCcCccCEEEEeCCC---------CCccchhHHHHHHhhcCC
Q psy2046 83 DEYNRDQDLFAFLLSTKAGGLGINLTAADTVIIHDVD---------FNPYNDKQAEDRCHRVGQ 137 (138)
Q Consensus 83 ~~F~~~~~~~vll~~~~~~~~Gl~l~~~~~vi~~~~~---------~~~~~~~Q~~gR~~R~GQ 137 (138)
+.|+++... +|++|++++.|+|+|. ..||+.+.+ .+..++.|++||+||.|.
T Consensus 305 ~~f~~g~i~--VLvaT~~la~Gvnipa-~~VII~~~~~~~~~~~~~~s~~~~~Qm~GRAGR~g~ 365 (674)
T PRK01172 305 EMFRNRYIK--VIVATPTLAAGVNLPA-RLVIVRDITRYGNGGIRYLSNMEIKQMIGRAGRPGY 365 (674)
T ss_pred HHHHcCCCe--EEEecchhhccCCCcc-eEEEEcCceEeCCCCceeCCHHHHHHHhhcCCCCCC
Confidence 999987543 7888999999999995 567776543 455678899999999984
No 89
>PHA02653 RNA helicase NPH-II; Provisional
Probab=99.52 E-value=1e-13 Score=108.77 Aligned_cols=94 Identities=16% Similarity=0.228 Sum_probs=79.1
Q ss_pred CCCeEEEEeccHHHHHHHHHHHhhc--CCeEEEEeCCCChHHHHHHHHHH-hcCCCceEEEEeccccccccCcCccCEEE
Q psy2046 38 NGHRVLIFSQFIFVLDILGHYMDIR--GWRHLRLDGATQVSSRQELIDEY-NRDQDLFAFLLSTKAGGLGINLTAADTVI 114 (138)
Q Consensus 38 ~~~k~iif~~~~~~~~~l~~~l~~~--g~~~~~i~g~~~~~~R~~~~~~F-~~~~~~~vll~~~~~~~~Gl~l~~~~~vi 114 (138)
.+.++|||++....++.+.+.|+.. ++.+..+||++++. ++.+++| ++++ . -+|++|+++++|+|++++++||
T Consensus 394 ~~g~iLVFlpg~~ei~~l~~~L~~~~~~~~v~~LHG~Lsq~--eq~l~~ff~~gk-~-kILVATdIAERGIDIp~V~~VI 469 (675)
T PHA02653 394 KGSSGIVFVASVSQCEEYKKYLEKRLPIYDFYIIHGKVPNI--DEILEKVYSSKN-P-SIIISTPYLESSVTIRNATHVY 469 (675)
T ss_pred cCCcEEEEECcHHHHHHHHHHHHhhcCCceEEeccCCcCHH--HHHHHHHhccCc-e-eEEeccChhhccccccCeeEEE
Confidence 3568999999999999999999887 78999999999864 5778888 4543 2 3888999999999999999999
Q ss_pred EeC---CC---------CCccchhHHHHHHhhc
Q psy2046 115 IHD---VD---------FNPYNDKQAEDRCHRV 135 (138)
Q Consensus 115 ~~~---~~---------~~~~~~~Q~~gR~~R~ 135 (138)
.++ .| .+.+.+.||.||+||.
T Consensus 470 D~G~~k~p~~~~g~~~~iSkasa~QRaGRAGR~ 502 (675)
T PHA02653 470 DTGRVYVPEPFGGKEMFISKSMRTQRKGRVGRV 502 (675)
T ss_pred ECCCccCCCcccCcccccCHHHHHHhccCcCCC
Confidence 987 22 2666889999999997
No 90
>KOG0346|consensus
Probab=99.51 E-value=5.2e-14 Score=103.62 Aligned_cols=117 Identities=20% Similarity=0.194 Sum_probs=99.8
Q ss_pred ccccCchHHHHHHHHHHhhhCCCeEEEEeccHHHHHHHHHHHhhcCCeEEEEeCCCChHHHHHHHHHHhcCCCceEEEEe
Q psy2046 18 LVVESGKLKKLDEILPDLKKNGHRVLIFSQFIFVLDILGHYMDIRGWRHLRLDGATQVSSRQELIDEYNRDQDLFAFLLS 97 (138)
Q Consensus 18 ~~~~s~K~~~l~~ll~~~~~~~~k~iif~~~~~~~~~l~~~l~~~g~~~~~i~g~~~~~~R~~~~~~F~~~~~~~vll~~ 97 (138)
.+.+..|+..+.-+++--.-.| |.|||++.++....|.-.|+..|++.+.++|.++...|.-++++|+.|-.. +++.
T Consensus 248 ~cse~DKflllyallKL~LI~g-KsliFVNtIdr~YrLkLfLeqFGiksciLNseLP~NSR~Hii~QFNkG~Yd--ivIA 324 (569)
T KOG0346|consen 248 KCSEEDKFLLLYALLKLRLIRG-KSLIFVNTIDRCYRLKLFLEQFGIKSCILNSELPANSRCHIIEQFNKGLYD--IVIA 324 (569)
T ss_pred EeccchhHHHHHHHHHHHHhcC-ceEEEEechhhhHHHHHHHHHhCcHhhhhcccccccchhhHHHHhhCccee--EEEE
Confidence 4556678888887776433444 899999999999999999999999999999999999999999999887543 5555
Q ss_pred cc--------------------------c---------cccccCcCccCEEEEeCCCCCccchhHHHHHHhhcCC
Q psy2046 98 TK--------------------------A---------GGLGINLTAADTVIIHDVDFNPYNDKQAEDRCHRVGQ 137 (138)
Q Consensus 98 ~~--------------------------~---------~~~Gl~l~~~~~vi~~~~~~~~~~~~Q~~gR~~R~GQ 137 (138)
|+ . .++|+|++.+++|++||+|-+...|++|+||+.|-|-
T Consensus 325 tD~s~~~~~~eee~kgk~~e~~~kndkkskkK~D~E~GVsRGIDF~~V~~VlNFD~P~t~~sYIHRvGRTaRg~n 399 (569)
T KOG0346|consen 325 TDDSADGDKLEEEVKGKSDEKNPKNDKKSKKKLDKESGVSRGIDFHHVSNVLNFDFPETVTSYIHRVGRTARGNN 399 (569)
T ss_pred ccCccchhhhhccccccccccCCCCccccccccCchhchhccccchheeeeeecCCCCchHHHHHhccccccCCC
Confidence 55 1 2489999999999999999999999999999999874
No 91
>PRK11664 ATP-dependent RNA helicase HrpB; Provisional
Probab=99.48 E-value=2.5e-13 Score=108.69 Aligned_cols=97 Identities=15% Similarity=0.184 Sum_probs=83.3
Q ss_pred CCCeEEEEeccHHHHHHHHHHHhh---cCCeEEEEeCCCChHHHHHHHHHHhcCCCceEEEEeccccccccCcCccCEEE
Q psy2046 38 NGHRVLIFSQFIFVLDILGHYMDI---RGWRHLRLDGATQVSSRQELIDEYNRDQDLFAFLLSTKAGGLGINLTAADTVI 114 (138)
Q Consensus 38 ~~~k~iif~~~~~~~~~l~~~l~~---~g~~~~~i~g~~~~~~R~~~~~~F~~~~~~~vll~~~~~~~~Gl~l~~~~~vi 114 (138)
.+.++|||++....++.+.+.|.. .++.+..+||++++++|.++++.|.++.. -+|++|+++++||+++++++||
T Consensus 211 ~~g~iLVFlpg~~ei~~l~~~L~~~~~~~~~v~~Lhg~l~~~eq~~~~~~~~~G~r--kVlvATnIAErsLtIp~V~~VI 288 (812)
T PRK11664 211 ESGSLLLFLPGVGEIQRVQEQLASRVASDVLLCPLYGALSLAEQQKAILPAPAGRR--KVVLATNIAETSLTIEGIRLVV 288 (812)
T ss_pred CCCCEEEEcCCHHHHHHHHHHHHHhccCCceEEEeeCCCCHHHHHHHhccccCCCe--EEEEecchHHhcccccCceEEE
Confidence 356899999999999999999987 57889999999999999999999987743 3888999999999999999999
Q ss_pred EeCCC----CCc--------------cchhHHHHHHhhcC
Q psy2046 115 IHDVD----FNP--------------YNDKQAEDRCHRVG 136 (138)
Q Consensus 115 ~~~~~----~~~--------------~~~~Q~~gR~~R~G 136 (138)
.++.+ +++ +.+.||.||+||.+
T Consensus 289 D~Gl~r~~~yd~~~g~~~L~~~~iSkasa~QR~GRaGR~~ 328 (812)
T PRK11664 289 DSGLERVARFDPKTGLTRLVTQRISQASMTQRAGRAGRLE 328 (812)
T ss_pred ECCCcccccccccCCcceeEEEeechhhhhhhccccCCCC
Confidence 97654 222 35889999999963
No 92
>PRK12904 preprotein translocase subunit SecA; Reviewed
Probab=99.46 E-value=6.2e-13 Score=105.54 Aligned_cols=114 Identities=21% Similarity=0.213 Sum_probs=101.0
Q ss_pred ccCchHHHHHHHHHHhhhCCCeEEEEeccHHHHHHHHHHHhhcCCeEEEEeCCCChHHHHHHHHHHhcCCCceEEEEecc
Q psy2046 20 VESGKLKKLDEILPDLKKNGHRVLIFSQFIFVLDILGHYMDIRGWRHLRLDGATQVSSRQELIDEYNRDQDLFAFLLSTK 99 (138)
Q Consensus 20 ~~s~K~~~l~~ll~~~~~~~~k~iif~~~~~~~~~l~~~l~~~g~~~~~i~g~~~~~~R~~~~~~F~~~~~~~vll~~~~ 99 (138)
....|+.++.+.+.+....+.++||||.++...+.|+..|.+.|+++..+||. +.+|+..+.+|..++.. ++++|+
T Consensus 411 t~~~K~~aI~~~I~~~~~~grpVLIft~Si~~se~Ls~~L~~~gi~~~vLnak--q~eREa~Iia~Ag~~g~--VtIATN 486 (830)
T PRK12904 411 TEKEKFDAVVEDIKERHKKGQPVLVGTVSIEKSELLSKLLKKAGIPHNVLNAK--NHEREAEIIAQAGRPGA--VTIATN 486 (830)
T ss_pred CHHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHCCCceEeccCc--hHHHHHHHHHhcCCCce--EEEecc
Confidence 34479999999998878889999999999999999999999999999999995 77999999999876654 888999
Q ss_pred ccccccCcCc--------------------------------------cCEEEEeCCCCCccchhHHHHHHhhcCC
Q psy2046 100 AGGLGINLTA--------------------------------------ADTVIIHDVDFNPYNDKQAEDRCHRVGQ 137 (138)
Q Consensus 100 ~~~~Gl~l~~--------------------------------------~~~vi~~~~~~~~~~~~Q~~gR~~R~GQ 137 (138)
.+|+|+|+.- .=|||..+.+-+.....|..||++|.|.
T Consensus 487 mAGRGtDI~LgGn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~GGLhVigTerhesrRid~QlrGRagRQGd 562 (830)
T PRK12904 487 MAGRGTDIKLGGNPEMLAAALLEEETEEQIAKIKAEWQEEHEEVLEAGGLHVIGTERHESRRIDNQLRGRSGRQGD 562 (830)
T ss_pred cccCCcCccCCCchhhhhhhhhhhhhhHHHHHHHHHHhhhhhhHHHcCCCEEEecccCchHHHHHHhhcccccCCC
Confidence 9999999763 3478888888899999999999999996
No 93
>COG1201 Lhr Lhr-like helicases [General function prediction only]
Probab=99.46 E-value=5.8e-13 Score=105.53 Aligned_cols=112 Identities=22% Similarity=0.181 Sum_probs=98.7
Q ss_pred hHHHHHHHHHHhhhCCCeEEEEeccHHHHHHHHHHHhhcC-CeEEEEeCCCChHHHHHHHHHHhcCCCceEEEEeccccc
Q psy2046 24 KLKKLDEILPDLKKNGHRVLIFSQFIFVLDILGHYMDIRG-WRHLRLDGATQVSSRQELIDEYNRDQDLFAFLLSTKAGG 102 (138)
Q Consensus 24 K~~~l~~ll~~~~~~~~k~iif~~~~~~~~~l~~~l~~~g-~~~~~i~g~~~~~~R~~~~~~F~~~~~~~vll~~~~~~~ 102 (138)
-...+.+.+.++.++...++||+|++...+.+...|+..+ .++...||+++.++|...-++|++|+ .+ .++||.+..
T Consensus 238 ~~~~~~~~i~~~v~~~~ttLIF~NTR~~aE~l~~~L~~~~~~~i~~HHgSlSre~R~~vE~~lk~G~-lr-avV~TSSLE 315 (814)
T COG1201 238 LWAALYERIAELVKKHRTTLIFTNTRSGAERLAFRLKKLGPDIIEVHHGSLSRELRLEVEERLKEGE-LK-AVVATSSLE 315 (814)
T ss_pred hhHHHHHHHHHHHhhcCcEEEEEeChHHHHHHHHHHHHhcCCceeeecccccHHHHHHHHHHHhcCC-ce-EEEEccchh
Confidence 3455666777777777799999999999999999999887 88999999999999999999999997 44 677889999
Q ss_pred cccCcCccCEEEEeCCCCCccchhHHHHHH-hhcCC
Q psy2046 103 LGINLTAADTVIIHDVDFNPYNDKQAEDRC-HRVGQ 137 (138)
Q Consensus 103 ~Gl~l~~~~~vi~~~~~~~~~~~~Q~~gR~-~R~GQ 137 (138)
.|+|...++.||.+..|-.-....||+||+ ||.|.
T Consensus 316 LGIDiG~vdlVIq~~SP~sV~r~lQRiGRsgHr~~~ 351 (814)
T COG1201 316 LGIDIGDIDLVIQLGSPKSVNRFLQRIGRAGHRLGE 351 (814)
T ss_pred hccccCCceEEEEeCCcHHHHHHhHhccccccccCC
Confidence 999999999999999999999999999999 45543
No 94
>PRK00254 ski2-like helicase; Provisional
Probab=99.46 E-value=5.1e-13 Score=106.29 Aligned_cols=108 Identities=16% Similarity=0.058 Sum_probs=81.0
Q ss_pred HHHHHHHhhhCCCeEEEEeccHHHHHHHHHHHhh---------------------------------cCCeEEEEeCCCC
Q psy2046 28 LDEILPDLKKNGHRVLIFSQFIFVLDILGHYMDI---------------------------------RGWRHLRLDGATQ 74 (138)
Q Consensus 28 l~~ll~~~~~~~~k~iif~~~~~~~~~l~~~l~~---------------------------------~g~~~~~i~g~~~ 74 (138)
...++.+....+.++|||++++..++.++..|.. ....+..+||+++
T Consensus 227 ~~~~~~~~i~~~~~vLVF~~sr~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~gv~~hHagl~ 306 (720)
T PRK00254 227 WESLVYDAVKKGKGALVFVNTRRSAEKEALELAKKIKRFLTKPELRALKELADSLEENPTNEKLKKALRGGVAFHHAGLG 306 (720)
T ss_pred HHHHHHHHHHhCCCEEEEEcChHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHhcCCCcHHHHHHHhhCEEEeCCCCC
Confidence 3444555555678999999999877665544421 1235789999999
Q ss_pred hHHHHHHHHHHhcCCCceEEEEeccccccccCcCccCEEEE-------eCCCC-CccchhHHHHHHhhcCC
Q psy2046 75 VSSRQELIDEYNRDQDLFAFLLSTKAGGLGINLTAADTVII-------HDVDF-NPYNDKQAEDRCHRVGQ 137 (138)
Q Consensus 75 ~~~R~~~~~~F~~~~~~~vll~~~~~~~~Gl~l~~~~~vi~-------~~~~~-~~~~~~Q~~gR~~R~GQ 137 (138)
+++|..+.+.|++|... +|++|++++.|+|++..+.||. ++.+. ...++.|++||+||.|.
T Consensus 307 ~~eR~~ve~~F~~G~i~--VLvaT~tLa~Gvnipa~~vVI~~~~~~~~~~~~~~~~~~~~Qm~GRAGR~~~ 375 (720)
T PRK00254 307 RTERVLIEDAFREGLIK--VITATPTLSAGINLPAFRVIIRDTKRYSNFGWEDIPVLEIQQMMGRAGRPKY 375 (720)
T ss_pred HHHHHHHHHHHHCCCCe--EEEeCcHHhhhcCCCceEEEECCceEcCCCCceeCCHHHHHHhhhccCCCCc
Confidence 99999999999988543 7889999999999998777774 22222 23478999999999873
No 95
>KOG0337|consensus
Probab=99.45 E-value=9.5e-14 Score=101.74 Aligned_cols=115 Identities=17% Similarity=0.150 Sum_probs=102.1
Q ss_pred cCchHHHHHHHHHHhhhCCCeEEEEeccHHHHHHHHHHHhhcCCeEEEEeCCCChHHHHHHHHHHhcCCCceEEEEeccc
Q psy2046 21 ESGKLKKLDEILPDLKKNGHRVLIFSQFIFVLDILGHYMDIRGWRHLRLDGATQVSSRQELIDEYNRDQDLFAFLLSTKA 100 (138)
Q Consensus 21 ~s~K~~~l~~ll~~~~~~~~k~iif~~~~~~~~~l~~~l~~~g~~~~~i~g~~~~~~R~~~~~~F~~~~~~~vll~~~~~ 100 (138)
...|...|+.++..... +++++||+.....++.+...|...|+.+..++|++.+..|...+.+|+.++.. +++.|++
T Consensus 244 ~a~K~aaLl~il~~~~~-~~~t~vf~~tk~hve~~~~ll~~~g~~~s~iysslD~~aRk~~~~~F~~~k~~--~lvvTdv 320 (529)
T KOG0337|consen 244 KAEKEAALLSILGGRIK-DKQTIVFVATKHHVEYVRGLLRDFGGEGSDIYSSLDQEARKINGRDFRGRKTS--ILVVTDV 320 (529)
T ss_pred cHHHHHHHHHHHhcccc-ccceeEEecccchHHHHHHHHHhcCCCccccccccChHhhhhccccccCCccc--eEEEehh
Confidence 34577777777765433 45899999999999999999999999999999999999999999999887665 7888999
Q ss_pred cccccCcCccCEEEEeCCCCCccchhHHHHHHhhcCCC
Q psy2046 101 GGLGINLTAADTVIIHDVDFNPYNDKQAEDRCHRVGQT 138 (138)
Q Consensus 101 ~~~Gl~l~~~~~vi~~~~~~~~~~~~Q~~gR~~R~GQt 138 (138)
+++|+|+|.-++||+||.|-++..+.+|.||+.|.|.|
T Consensus 321 aaRG~diplldnvinyd~p~~~klFvhRVgr~aragrt 358 (529)
T KOG0337|consen 321 AARGLDIPLLDNVINYDFPPDDKLFVHRVGRVARAGRT 358 (529)
T ss_pred hhccCCCccccccccccCCCCCceEEEEecchhhcccc
Confidence 99999999999999999999999999999999998864
No 96
>PRK13104 secA preprotein translocase subunit SecA; Reviewed
Probab=99.45 E-value=6.4e-13 Score=105.82 Aligned_cols=115 Identities=16% Similarity=0.181 Sum_probs=103.3
Q ss_pred cccCchHHHHHHHHHHhhhCCCeEEEEeccHHHHHHHHHHHhhcCCeEEEEeCCCChHHHHHHHHHHhcCCCceEEEEec
Q psy2046 19 VVESGKLKKLDEILPDLKKNGHRVLIFSQFIFVLDILGHYMDIRGWRHLRLDGATQVSSRQELIDEYNRDQDLFAFLLST 98 (138)
Q Consensus 19 ~~~s~K~~~l~~ll~~~~~~~~k~iif~~~~~~~~~l~~~l~~~g~~~~~i~g~~~~~~R~~~~~~F~~~~~~~vll~~~ 98 (138)
.....|+.++.+-+.+....|..+||||.+++..+.|+..|.+.|+++..+||...+.+|..+.++|+.|. ++++|
T Consensus 424 ~t~~~k~~av~~~i~~~~~~g~PVLVgt~Sie~sE~ls~~L~~~gi~h~vLnak~~q~Ea~iia~Ag~~G~----VtIAT 499 (896)
T PRK13104 424 LTQADKFQAIIEDVRECGVRKQPVLVGTVSIEASEFLSQLLKKENIKHQVLNAKFHEKEAQIIAEAGRPGA----VTIAT 499 (896)
T ss_pred cCHHHHHHHHHHHHHHHHhCCCCEEEEeCcHHHHHHHHHHHHHcCCCeEeecCCCChHHHHHHHhCCCCCc----EEEec
Confidence 33457899999989888999999999999999999999999999999999999999999999999998873 78899
Q ss_pred cccccccCcC--------------------------------------ccCEEEEeCCCCCccchhHHHHHHhhcCC
Q psy2046 99 KAGGLGINLT--------------------------------------AADTVIIHDVDFNPYNDKQAEDRCHRVGQ 137 (138)
Q Consensus 99 ~~~~~Gl~l~--------------------------------------~~~~vi~~~~~~~~~~~~Q~~gR~~R~GQ 137 (138)
+.+|+|+|+. +.=|||-.+.+-+.....|-.||+||.|.
T Consensus 500 NmAGRGtDI~Lggn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GGL~VIgTerhesrRID~QLrGRaGRQGD 576 (896)
T PRK13104 500 NMAGRGTDIVLGGSLAADLANLPADASEQEKEAVKKEWQKRHDEVIAAGGLRIIGSERHESRRIDNQLRGRAGRQGD 576 (896)
T ss_pred cCccCCcceecCCchhhhhhccccchhhHHHHHHHHHhhhhhhHHHHcCCCEEEeeccCchHHHHHHhccccccCCC
Confidence 9999999976 23478888888888899999999999996
No 97
>KOG0351|consensus
Probab=99.45 E-value=2.8e-13 Score=108.91 Aligned_cols=125 Identities=17% Similarity=0.122 Sum_probs=103.3
Q ss_pred CCCCCCcccccCchH--HHHHHHHHHh--hhCCCeEEEEeccHHHHHHHHHHHhhcCCeEEEEeCCCChHHHHHHHHHHh
Q psy2046 11 KYKVPDDLVVESGKL--KKLDEILPDL--KKNGHRVLIFSQFIFVLDILGHYMDIRGWRHLRLDGATQVSSRQELIDEYN 86 (138)
Q Consensus 11 ~~~~~~~~~~~s~K~--~~l~~ll~~~--~~~~~k~iif~~~~~~~~~l~~~l~~~g~~~~~i~g~~~~~~R~~~~~~F~ 86 (138)
.+..++...+-++|. ..+..++... ...++..||||.+..+++.++..|...|+....||++++..+|..+-.+|.
T Consensus 453 sfnR~NL~yeV~~k~~~~~~~~~~~~~~~~~~~~s~IIYC~sr~~ce~vs~~L~~~~~~a~~YHAGl~~~~R~~Vq~~w~ 532 (941)
T KOG0351|consen 453 SFNRPNLKYEVSPKTDKDALLDILEESKLRHPDQSGIIYCLSRKECEQVSAVLRSLGKSAAFYHAGLPPKERETVQKAWM 532 (941)
T ss_pred cCCCCCceEEEEeccCccchHHHHHHhhhcCCCCCeEEEeCCcchHHHHHHHHHHhchhhHhhhcCCCHHHHHHHHHHHh
Confidence 334444444444444 3333343332 334678999999999999999999999999999999999999999999999
Q ss_pred cCCCceEEEEeccccccccCcCccCEEEEeCCCCCccchhHHHHHHhhcCC
Q psy2046 87 RDQDLFAFLLSTKAGGLGINLTAADTVIIHDVDFNPYNDKQAEDRCHRVGQ 137 (138)
Q Consensus 87 ~~~~~~vll~~~~~~~~Gl~l~~~~~vi~~~~~~~~~~~~Q~~gR~~R~GQ 137 (138)
.++.. +++.|-+.|.|+|.+++.-||+|..|-+..-|.|..||+||.|+
T Consensus 533 ~~~~~--VivATVAFGMGIdK~DVR~ViH~~lPks~E~YYQE~GRAGRDG~ 581 (941)
T KOG0351|consen 533 SDKIR--VIVATVAFGMGIDKPDVRFVIHYSLPKSFEGYYQEAGRAGRDGL 581 (941)
T ss_pred cCCCe--EEEEEeeccCCCCCCceeEEEECCCchhHHHHHHhccccCcCCC
Confidence 88643 67778999999999999999999999999999999999999996
No 98
>PRK13107 preprotein translocase subunit SecA; Reviewed
Probab=99.43 E-value=1.2e-12 Score=104.25 Aligned_cols=115 Identities=16% Similarity=0.172 Sum_probs=103.8
Q ss_pred cccCchHHHHHHHHHHhhhCCCeEEEEeccHHHHHHHHHHHhhcCCeEEEEeCCCChHHHHHHHHHHhcCCCceEEEEec
Q psy2046 19 VVESGKLKKLDEILPDLKKNGHRVLIFSQFIFVLDILGHYMDIRGWRHLRLDGATQVSSRQELIDEYNRDQDLFAFLLST 98 (138)
Q Consensus 19 ~~~s~K~~~l~~ll~~~~~~~~k~iif~~~~~~~~~l~~~l~~~g~~~~~i~g~~~~~~R~~~~~~F~~~~~~~vll~~~ 98 (138)
.....|+.++.+-+..+.+.|.++||||.+....+.++..|...|+++..+|+..++.++..+.++|+.|. ++++|
T Consensus 429 ~t~~~K~~Aii~ei~~~~~~GrpVLV~t~sv~~se~ls~~L~~~gi~~~vLnak~~~~Ea~ii~~Ag~~G~----VtIAT 504 (908)
T PRK13107 429 LTADEKYQAIIKDIKDCRERGQPVLVGTVSIEQSELLARLMVKEKIPHEVLNAKFHEREAEIVAQAGRTGA----VTIAT 504 (908)
T ss_pred eCHHHHHHHHHHHHHHHHHcCCCEEEEeCcHHHHHHHHHHHHHCCCCeEeccCcccHHHHHHHHhCCCCCc----EEEec
Confidence 33467899999999998999999999999999999999999999999999999999999999999998875 78889
Q ss_pred cccccccCcC-------------------------------------ccCEEEEeCCCCCccchhHHHHHHhhcCC
Q psy2046 99 KAGGLGINLT-------------------------------------AADTVIIHDVDFNPYNDKQAEDRCHRVGQ 137 (138)
Q Consensus 99 ~~~~~Gl~l~-------------------------------------~~~~vi~~~~~~~~~~~~Q~~gR~~R~GQ 137 (138)
+.+|+|.|+. +.=|||..+.+-+.....|-.||++|.|.
T Consensus 505 nmAGRGTDIkLggn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GGL~VIgTerheSrRID~QLrGRaGRQGD 580 (908)
T PRK13107 505 NMAGRGTDIVLGGNWNMEIEALENPTAEQKAKIKADWQIRHDEVVAAGGLHILGTERHESRRIDNQLRGRAGRQGD 580 (908)
T ss_pred CCcCCCcceecCCchHHhhhhhcchhhHHHHHHHHHHHhhHHHHHHcCCCEEEecccCchHHHHhhhhcccccCCC
Confidence 9999999976 23478888899899999999999999996
No 99
>KOG0298|consensus
Probab=99.42 E-value=3.8e-13 Score=108.73 Aligned_cols=113 Identities=25% Similarity=0.302 Sum_probs=94.6
Q ss_pred ccCchHHHHHHHHHHhh--hCCCeEEEEeccHHHHHHHHHHHhhcCCeEEEEeCCCChHHHHHHHHHHhcCCCceEEEEe
Q psy2046 20 VESGKLKKLDEILPDLK--KNGHRVLIFSQFIFVLDILGHYMDIRGWRHLRLDGATQVSSRQELIDEYNRDQDLFAFLLS 97 (138)
Q Consensus 20 ~~s~K~~~l~~ll~~~~--~~~~k~iif~~~~~~~~~l~~~l~~~g~~~~~i~g~~~~~~R~~~~~~F~~~~~~~vll~~ 97 (138)
..++|+..+...+..+. +..+++|+|+++...+|.++..+...++.+..-.+ + ++-...+..|+. +.++++-
T Consensus 1200 dfg~kI~~v~~~il~iK~k~~qekvIvfsqws~~ldV~e~~~~~N~I~~~~~~~-t--~d~~dc~~~fk~---I~clll~ 1273 (1394)
T KOG0298|consen 1200 DFGTKIDSVVIAILYIKFKNEQEKVIVFSQWSVVLDVKELRYLMNLIKKQLDGE-T--EDFDDCIICFKS---IDCLLLF 1273 (1394)
T ss_pred hhccCchhHHHHHHHHhccCcCceEEEEEehHHHHHHHHHHHHhhhhHhhhccC-C--cchhhhhhhccc---ceEEEEE
Confidence 34678888877776654 33579999999999999999999999888655443 2 345567777854 6779999
Q ss_pred ccccccccCcCccCEEEEeCCCCCccchhHHHHHHhhcCCC
Q psy2046 98 TKAGGLGINLTAADTVIIHDVDFNPYNDKQAEDRCHRVGQT 138 (138)
Q Consensus 98 ~~~~~~Gl~l~~~~~vi~~~~~~~~~~~~Q~~gR~~R~GQt 138 (138)
+..++-|+||..|.||+..+|..||..+.||+||+||+||+
T Consensus 1274 ~~~~~~GLNL~eA~Hvfl~ePiLN~~~E~QAigRvhRiGQ~ 1314 (1394)
T KOG0298|consen 1274 VSKGSKGLNLIEATHVFLVEPILNPGDEAQAIGRVHRIGQK 1314 (1394)
T ss_pred eccCcccccHHhhhhhheeccccCchHHHhhhhhhhhcccc
Confidence 99999999999999999999999999999999999999996
No 100
>TIGR03158 cas3_cyano CRISPR-associated helicase, Cyano-type. subtype of CRISPR/Cas locus, found in several species of Cyanobacteria and several archaeal species. It contains helicase motifs and appears to represent the Cas3 protein of the Cyano subtype of CRISPR/Cas system.
Probab=99.40 E-value=2.8e-12 Score=94.64 Aligned_cols=85 Identities=19% Similarity=0.166 Sum_probs=70.6
Q ss_pred CCCeEEEEeccHHHHHHHHHHHhhcC--CeEEEEeCCCChHHHHHHHHHHhcCCCceEEEEeccccccccCcCccCEEEE
Q psy2046 38 NGHRVLIFSQFIFVLDILGHYMDIRG--WRHLRLDGATQVSSRQELIDEYNRDQDLFAFLLSTKAGGLGINLTAADTVII 115 (138)
Q Consensus 38 ~~~k~iif~~~~~~~~~l~~~l~~~g--~~~~~i~g~~~~~~R~~~~~~F~~~~~~~vll~~~~~~~~Gl~l~~~~~vi~ 115 (138)
++.+++||+++...++.+...|+..+ +.+..+||.+++.+|.+.. +. .+|++|+++++|+|++.. +||
T Consensus 271 ~~~k~LIf~nt~~~~~~l~~~L~~~~~~~~~~~l~g~~~~~~R~~~~------~~--~iLVaTdv~~rGiDi~~~-~vi- 340 (357)
T TIGR03158 271 PGERGAIILDSLDEVNRLSDLLQQQGLGDDIGRITGFAPKKDRERAM------QF--DILLGTSTVDVGVDFKRD-WLI- 340 (357)
T ss_pred CCCeEEEEECCHHHHHHHHHHHhhhCCCceEEeeecCCCHHHHHHhc------cC--CEEEEecHHhcccCCCCc-eEE-
Confidence 46799999999999999999999865 5788899999999887653 22 278899999999999864 666
Q ss_pred eCCCCCccchhHHHHHHh
Q psy2046 116 HDVDFNPYNDKQAEDRCH 133 (138)
Q Consensus 116 ~~~~~~~~~~~Q~~gR~~ 133 (138)
++ |.+...|.||+||++
T Consensus 341 ~~-p~~~~~yiqR~GR~g 357 (357)
T TIGR03158 341 FS-ARDAAAFWQRLGRLG 357 (357)
T ss_pred EC-CCCHHHHhhhcccCC
Confidence 56 667889999999975
No 101
>PRK09694 helicase Cas3; Provisional
Probab=99.40 E-value=5.1e-12 Score=101.65 Aligned_cols=107 Identities=15% Similarity=0.083 Sum_probs=85.7
Q ss_pred HHHHHHHhhhCCCeEEEEeccHHHHHHHHHHHhhcC---CeEEEEeCCCChHHH----HHHHHHH-hcCCCc-eEEEEec
Q psy2046 28 LDEILPDLKKNGHRVLIFSQFIFVLDILGHYMDIRG---WRHLRLDGATQVSSR----QELIDEY-NRDQDL-FAFLLST 98 (138)
Q Consensus 28 l~~ll~~~~~~~~k~iif~~~~~~~~~l~~~l~~~g---~~~~~i~g~~~~~~R----~~~~~~F-~~~~~~-~vll~~~ 98 (138)
+.+.+.+....+.+++||++++..+..+.+.|++.+ .++..+||+++..+| .++++.| ++++.. ..+|++|
T Consensus 549 ~l~~i~~~~~~g~~vLVf~NTV~~Aq~ly~~L~~~~~~~~~v~llHsrf~~~dR~~~E~~vl~~fgk~g~r~~~~ILVaT 628 (878)
T PRK09694 549 LLQRMIAAANAGAQVCLICNLVDDAQKLYQRLKELNNTQVDIDLFHARFTLNDRREKEQRVIENFGKNGKRNQGRILVAT 628 (878)
T ss_pred HHHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHHHHHHhcCCcCCCeEEEEC
Confidence 444444444678899999999999999999998765 578999999999988 4678899 454321 3488999
Q ss_pred cccccccCcCccCEEEEeCCCCCccchhHHHHHHhhcCC
Q psy2046 99 KAGGLGINLTAADTVIIHDVDFNPYNDKQAEDRCHRVGQ 137 (138)
Q Consensus 99 ~~~~~Gl~l~~~~~vi~~~~~~~~~~~~Q~~gR~~R~GQ 137 (138)
++.+.|+|+ +.+.+|....| ...+.||+||++|.|.
T Consensus 629 QViE~GLDI-d~DvlItdlaP--idsLiQRaGR~~R~~~ 664 (878)
T PRK09694 629 QVVEQSLDL-DFDWLITQLCP--VDLLFQRLGRLHRHHR 664 (878)
T ss_pred cchhheeec-CCCeEEECCCC--HHHHHHHHhccCCCCC
Confidence 999999999 57888876666 5689999999999874
No 102
>COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription]
Probab=99.35 E-value=1.4e-11 Score=95.28 Aligned_cols=119 Identities=13% Similarity=0.195 Sum_probs=98.8
Q ss_pred cccccCchHHHHHHHHHHhhhCCCeEEEEeccHHHHH--------HHHHHHhhc--CCeEEEEeCCCChHHHHHHHHHHh
Q psy2046 17 DLVVESGKLKKLDEILPDLKKNGHRVLIFSQFIFVLD--------ILGHYMDIR--GWRHLRLDGATQVSSRQELIDEYN 86 (138)
Q Consensus 17 ~~~~~s~K~~~l~~ll~~~~~~~~k~iif~~~~~~~~--------~l~~~l~~~--g~~~~~i~g~~~~~~R~~~~~~F~ 86 (138)
+.+....+...+.+.+..-..+|.++.+-|+.++..+ .+.+.|+.. +..+..+||+|+.+++++++++|+
T Consensus 451 T~~i~~~~~~~v~e~i~~ei~~GrQaY~VcPLIeESE~l~l~~a~~~~~~L~~~~~~~~vgL~HGrm~~~eKd~vM~~Fk 530 (677)
T COG1200 451 TVVIPHERRPEVYERIREEIAKGRQAYVVCPLIEESEKLELQAAEELYEELKSFLPELKVGLVHGRMKPAEKDAVMEAFK 530 (677)
T ss_pred EEEeccccHHHHHHHHHHHHHcCCEEEEEeccccccccchhhhHHHHHHHHHHHcccceeEEEecCCChHHHHHHHHHHH
Confidence 4455557788888888776778999999999886543 344455432 566899999999999999999999
Q ss_pred cCCCceEEEEeccccccccCcCccCEEEEeCCC-CCccchhHHHHHHhhcCC
Q psy2046 87 RDQDLFAFLLSTKAGGLGINLTAADTVIIHDVD-FNPYNDKQAEDRCHRVGQ 137 (138)
Q Consensus 87 ~~~~~~vll~~~~~~~~Gl~l~~~~~vi~~~~~-~~~~~~~Q~~gR~~R~GQ 137 (138)
+++.. +|++|.+...|+|+|+|+.+|+.++. +..++..|-.||+||-+.
T Consensus 531 ~~e~~--ILVaTTVIEVGVdVPnATvMVIe~AERFGLaQLHQLRGRVGRG~~ 580 (677)
T COG1200 531 EGEID--ILVATTVIEVGVDVPNATVMVIENAERFGLAQLHQLRGRVGRGDL 580 (677)
T ss_pred cCCCc--EEEEeeEEEecccCCCCeEEEEechhhhhHHHHHHhccccCCCCc
Confidence 98766 88899999999999999999999988 789999999999999653
No 103
>PRK11131 ATP-dependent RNA helicase HrpA; Provisional
Probab=99.31 E-value=1.2e-11 Score=102.09 Aligned_cols=108 Identities=17% Similarity=0.195 Sum_probs=84.1
Q ss_pred HHHHHHHHHHhh-hCCCeEEEEeccHHHHHHHHHHHhhcCCe---EEEEeCCCChHHHHHHHHHHhcCCCceEEEEeccc
Q psy2046 25 LKKLDEILPDLK-KNGHRVLIFSQFIFVLDILGHYMDIRGWR---HLRLDGATQVSSRQELIDEYNRDQDLFAFLLSTKA 100 (138)
Q Consensus 25 ~~~l~~ll~~~~-~~~~k~iif~~~~~~~~~l~~~l~~~g~~---~~~i~g~~~~~~R~~~~~~F~~~~~~~vll~~~~~ 100 (138)
+..+.+.+..+. +...++|||++....++.+.+.|...+++ +..+||++++++|.++++.+ + . +-+|++|++
T Consensus 271 l~~ll~~V~~l~~~~~GdILVFLpg~~EIe~lae~L~~~~~~~~~VlpLhg~Ls~~eQ~~Vf~~~--g-~-rkIIVATNI 346 (1294)
T PRK11131 271 LQAIFDAVDELGREGPGDILIFMSGEREIRDTADALNKLNLRHTEILPLYARLSNSEQNRVFQSH--S-G-RRIVLATNV 346 (1294)
T ss_pred HHHHHHHHHHHhcCCCCCEEEEcCCHHHHHHHHHHHHhcCCCcceEeecccCCCHHHHHHHhccc--C-C-eeEEEeccH
Confidence 334444444433 23468999999999999999999988765 56899999999999987753 2 2 347889999
Q ss_pred cccccCcCccCEEEEeC---------------CCC---CccchhHHHHHHhhcC
Q psy2046 101 GGLGINLTAADTVIIHD---------------VDF---NPYNDKQAEDRCHRVG 136 (138)
Q Consensus 101 ~~~Gl~l~~~~~vi~~~---------------~~~---~~~~~~Q~~gR~~R~G 136 (138)
+++|++++++.+||.++ .+. +...+.||.||+||.+
T Consensus 347 AEtSITIpgI~yVID~Gl~k~~~Yd~~~~~~~Lp~~~iSkasa~QRaGRAGR~~ 400 (1294)
T PRK11131 347 AETSLTVPGIKYVIDPGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRVS 400 (1294)
T ss_pred HhhccccCcceEEEECCCccccccccccCcccCCeeecCHhhHhhhccccCCCC
Confidence 99999999999999974 232 2367899999999974
No 104
>PRK09401 reverse gyrase; Reviewed
Probab=99.30 E-value=2.3e-11 Score=100.64 Aligned_cols=102 Identities=17% Similarity=0.078 Sum_probs=84.6
Q ss_pred chHHHHHHHHHHhhhCCCeEEEEeccHHH---HHHHHHHHhhcCCeEEEEeCCCChHHHHHHHHHHhcCCCceEEEEe--
Q psy2046 23 GKLKKLDEILPDLKKNGHRVLIFSQFIFV---LDILGHYMDIRGWRHLRLDGATQVSSRQELIDEYNRDQDLFAFLLS-- 97 (138)
Q Consensus 23 ~K~~~l~~ll~~~~~~~~k~iif~~~~~~---~~~l~~~l~~~g~~~~~i~g~~~~~~R~~~~~~F~~~~~~~vll~~-- 97 (138)
.|...+.+++..+ +.++|||++.... ++.+.+.|+..|+++..+||++ .+.+++|++|+. .+|+++
T Consensus 315 ~k~~~L~~ll~~l---~~~~LIFv~t~~~~~~ae~l~~~L~~~gi~v~~~hg~l-----~~~l~~F~~G~~-~VLVatas 385 (1176)
T PRK09401 315 DSVEKLVELVKRL---GDGGLIFVPSDKGKEYAEELAEYLEDLGINAELAISGF-----ERKFEKFEEGEV-DVLVGVAS 385 (1176)
T ss_pred cHHHHHHHHHHhc---CCCEEEEEecccChHHHHHHHHHHHHCCCcEEEEeCcH-----HHHHHHHHCCCC-CEEEEecC
Confidence 5777777777543 4589999998766 9999999999999999999999 235699999865 455554
Q ss_pred -ccccccccCcCc-cCEEEEeCCCC------CccchhHHHHHHh
Q psy2046 98 -TKAGGLGINLTA-ADTVIIHDVDF------NPYNDKQAEDRCH 133 (138)
Q Consensus 98 -~~~~~~Gl~l~~-~~~vi~~~~~~------~~~~~~Q~~gR~~ 133 (138)
|+++++|||+|. ..+||+|+.|- ....+.+++||+-
T Consensus 386 ~tdv~aRGIDiP~~IryVI~y~vP~~~~~~~~~~~~~~~~~r~~ 429 (1176)
T PRK09401 386 YYGVLVRGIDLPERIRYAIFYGVPKFKFSLEEELAPPFLLLRLL 429 (1176)
T ss_pred CCCceeecCCCCcceeEEEEeCCCCEEEeccccccCHHHHHHHH
Confidence 799999999998 89999999997 5677888998874
No 105
>TIGR01967 DEAH_box_HrpA ATP-dependent helicase HrpA. This model represents HrpA, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria and a few high-GC Gram-positive bacteria. HrpA is about 1300 amino acids long, while its paralog HrpB, also uncharacterized, is about 800 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=99.30 E-value=2.2e-11 Score=100.63 Aligned_cols=109 Identities=17% Similarity=0.160 Sum_probs=86.0
Q ss_pred hHHHHHHHHHHhhh-CCCeEEEEeccHHHHHHHHHHHhhcC---CeEEEEeCCCChHHHHHHHHHHhcCCCceEEEEecc
Q psy2046 24 KLKKLDEILPDLKK-NGHRVLIFSQFIFVLDILGHYMDIRG---WRHLRLDGATQVSSRQELIDEYNRDQDLFAFLLSTK 99 (138)
Q Consensus 24 K~~~l~~ll~~~~~-~~~k~iif~~~~~~~~~l~~~l~~~g---~~~~~i~g~~~~~~R~~~~~~F~~~~~~~vll~~~~ 99 (138)
+...+.+.+..+.. ...++|||.+....++.+.+.|.+.+ +.+..+||++++++|.++++.+ +. +-+|++|+
T Consensus 263 ~~~~i~~~I~~l~~~~~GdILVFLpg~~EI~~l~~~L~~~~~~~~~VlpLhg~Ls~~eQ~~vf~~~---~~-rkIVLATN 338 (1283)
T TIGR01967 263 QLEAILDAVDELFAEGPGDILIFLPGEREIRDAAEILRKRNLRHTEILPLYARLSNKEQQRVFQPH---SG-RRIVLATN 338 (1283)
T ss_pred HHHHHHHHHHHHHhhCCCCEEEeCCCHHHHHHHHHHHHhcCCCCcEEEeccCCCCHHHHHHHhCCC---CC-ceEEEecc
Confidence 45556666665543 34689999999999999999998764 4578899999999999885543 22 34788899
Q ss_pred ccccccCcCccCEEEEeCCC-----------------C-CccchhHHHHHHhhcC
Q psy2046 100 AGGLGINLTAADTVIIHDVD-----------------F-NPYNDKQAEDRCHRVG 136 (138)
Q Consensus 100 ~~~~Gl~l~~~~~vi~~~~~-----------------~-~~~~~~Q~~gR~~R~G 136 (138)
++++||+++++.+||.++.+ | +.+.+.||.||+||.|
T Consensus 339 IAEtSLTIpgV~yVIDsGl~r~~~yd~~~~~~~L~~~~ISkasa~QRaGRAGR~~ 393 (1283)
T TIGR01967 339 VAETSLTVPGIHYVIDTGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRVA 393 (1283)
T ss_pred HHHhccccCCeeEEEeCCCccccccccccCccccCCccCCHHHHHHHhhhhCCCC
Confidence 99999999999999997632 1 3357889999999986
No 106
>PRK11448 hsdR type I restriction enzyme EcoKI subunit R; Provisional
Probab=99.28 E-value=5.4e-11 Score=98.07 Aligned_cols=94 Identities=13% Similarity=0.168 Sum_probs=80.0
Q ss_pred CCeEEEEeccHHHHHHHHHHHhhc------CC---eEEEEeCCCChHHHHHHHHHHhcCCCceEEEEeccccccccCcCc
Q psy2046 39 GHRVLIFSQFIFVLDILGHYMDIR------GW---RHLRLDGATQVSSRQELIDEYNRDQDLFAFLLSTKAGGLGINLTA 109 (138)
Q Consensus 39 ~~k~iif~~~~~~~~~l~~~l~~~------g~---~~~~i~g~~~~~~R~~~~~~F~~~~~~~vll~~~~~~~~Gl~l~~ 109 (138)
+.|+||||.+...++.+.+.|... ++ .+..++|+++ ++.+++++|++++.+ .++++++.+.+|+|+|.
T Consensus 698 ~~KtiIF~~s~~HA~~i~~~L~~~f~~~~~~~~~~~v~~itg~~~--~~~~li~~Fk~~~~p-~IlVsvdmL~TG~DvP~ 774 (1123)
T PRK11448 698 EGKTLIFAATDAHADMVVRLLKEAFKKKYGQVEDDAVIKITGSID--KPDQLIRRFKNERLP-NIVVTVDLLTTGIDVPS 774 (1123)
T ss_pred CCcEEEEEcCHHHHHHHHHHHHHHHHhhcCCcCccceEEEeCCcc--chHHHHHHHhCCCCC-eEEEEecccccCCCccc
Confidence 369999999999988888877653 22 3456899876 578899999987655 47778899999999999
Q ss_pred cCEEEEeCCCCCccchhHHHHHHhhc
Q psy2046 110 ADTVIIHDVDFNPYNDKQAEDRCHRV 135 (138)
Q Consensus 110 ~~~vi~~~~~~~~~~~~Q~~gR~~R~ 135 (138)
+++||++.++-++..|.|++||+-|.
T Consensus 775 v~~vVf~rpvkS~~lf~QmIGRgtR~ 800 (1123)
T PRK11448 775 ICNLVFLRRVRSRILYEQMLGRATRL 800 (1123)
T ss_pred ccEEEEecCCCCHHHHHHHHhhhccC
Confidence 99999999999999999999999996
No 107
>KOG0953|consensus
Probab=99.23 E-value=3.1e-11 Score=91.37 Aligned_cols=98 Identities=21% Similarity=0.249 Sum_probs=80.8
Q ss_pred hCCCeEEEEeccHHHHHHHHHHHhhcCCe-EEEEeCCCChHHHHHHHHHHhcCCCceEEEEeccccccccCcCccCEEEE
Q psy2046 37 KNGHRVLIFSQFIFVLDILGHYMDIRGWR-HLRLDGATQVSSRQELIDEYNRDQDLFAFLLSTKAGGLGINLTAADTVII 115 (138)
Q Consensus 37 ~~~~k~iif~~~~~~~~~l~~~l~~~g~~-~~~i~g~~~~~~R~~~~~~F~~~~~~~vll~~~~~~~~Gl~l~~~~~vi~ 115 (138)
+.|+-++-|+ ++.+-.+...++++|.. +++|+|+.++..|.+--..|++..+..-+|+.+++.|.|||| +...||+
T Consensus 356 k~GDCvV~FS--kk~I~~~k~kIE~~g~~k~aVIYGsLPPeTr~aQA~~FNd~~~e~dvlVAsDAIGMGLNL-~IrRiiF 432 (700)
T KOG0953|consen 356 KPGDCVVAFS--KKDIFTVKKKIEKAGNHKCAVIYGSLPPETRLAQAALFNDPSNECDVLVASDAIGMGLNL-NIRRIIF 432 (700)
T ss_pred CCCCeEEEee--hhhHHHHHHHHHHhcCcceEEEecCCCCchhHHHHHHhCCCCCccceEEeeccccccccc-ceeEEEE
Confidence 4578899998 46677888999988887 999999999999999999999765555578888999999998 5888999
Q ss_pred eCCC---------CCccchhHHHHHHhhcCC
Q psy2046 116 HDVD---------FNPYNDKQAEDRCHRVGQ 137 (138)
Q Consensus 116 ~~~~---------~~~~~~~Q~~gR~~R~GQ 137 (138)
++.. -...+..|-.||+||.|-
T Consensus 433 ~sl~Kysg~e~~~it~sqikQIAGRAGRf~s 463 (700)
T KOG0953|consen 433 YSLIKYSGRETEDITVSQIKQIAGRAGRFGS 463 (700)
T ss_pred eecccCCcccceeccHHHHHHHhhccccccc
Confidence 8765 223345599999999974
No 108
>PRK14701 reverse gyrase; Provisional
Probab=99.22 E-value=7e-11 Score=100.05 Aligned_cols=102 Identities=15% Similarity=0.173 Sum_probs=83.2
Q ss_pred HHHHHHHHHhhhCCCeEEEEeccHHH---HHHHHHHHhhcCCeEEEEeCCCChHHHHHHHHHHhcCCCceEEEEec----
Q psy2046 26 KKLDEILPDLKKNGHRVLIFSQFIFV---LDILGHYMDIRGWRHLRLDGATQVSSRQELIDEYNRDQDLFAFLLST---- 98 (138)
Q Consensus 26 ~~l~~ll~~~~~~~~k~iif~~~~~~---~~~l~~~l~~~g~~~~~i~g~~~~~~R~~~~~~F~~~~~~~vll~~~---- 98 (138)
..+.++++.+ +..+|||+++... ++.++..|...|+++..+||+ |.+.+++|++++.. +|++|
T Consensus 320 ~~L~~ll~~~---g~~gIVF~~t~~~~e~ae~la~~L~~~Gi~a~~~h~~-----R~~~l~~F~~G~~~--VLVaT~s~~ 389 (1638)
T PRK14701 320 EHVRELLKKL---GKGGLIFVPIDEGAEKAEEIEKYLLEDGFKIELVSAK-----NKKGFDLFEEGEID--YLIGVATYY 389 (1638)
T ss_pred HHHHHHHHhC---CCCeEEEEeccccchHHHHHHHHHHHCCCeEEEecch-----HHHHHHHHHcCCCC--EEEEecCCC
Confidence 4566666543 5689999998764 589999999999999999994 88999999998664 55566
Q ss_pred cccccccCcCc-cCEEEEeCCCC---CccchhHHH-------------HHHhhcCC
Q psy2046 99 KAGGLGINLTA-ADTVIIHDVDF---NPYNDKQAE-------------DRCHRVGQ 137 (138)
Q Consensus 99 ~~~~~Gl~l~~-~~~vi~~~~~~---~~~~~~Q~~-------------gR~~R~GQ 137 (138)
+++++|||+|+ +.+||+++.|- +...|.|.. ||++|.|.
T Consensus 390 gvaaRGIDiP~~Vryvi~~~~Pk~~~~~e~~~~~~~~~~~~~~~~~~~~~a~~~g~ 445 (1638)
T PRK14701 390 GTLVRGLDLPERIRFAVFYGVPKFRFRVDLEDPTIYRILGLLSEILKIEEELKEGI 445 (1638)
T ss_pred CeeEecCccCCccCEEEEeCCCCCCcchhhcccchhhhhcchHHHHHhhhhcccCC
Confidence 58999999997 99999999997 666666655 88888874
No 109
>KOG0352|consensus
Probab=99.21 E-value=2.1e-11 Score=90.09 Aligned_cols=95 Identities=15% Similarity=0.184 Sum_probs=90.6
Q ss_pred eEEEEeccHHHHHHHHHHHhhcCCeEEEEeCCCChHHHHHHHHHHhcCCCceEEEEeccccccccCcCccCEEEEeCCCC
Q psy2046 41 RVLIFSQFIFVLDILGHYMDIRGWRHLRLDGATQVSSRQELIDEYNRDQDLFAFLLSTKAGGLGINLTAADTVIIHDVDF 120 (138)
Q Consensus 41 k~iif~~~~~~~~~l~~~l~~~g~~~~~i~g~~~~~~R~~~~~~F~~~~~~~vll~~~~~~~~Gl~l~~~~~vi~~~~~~ 120 (138)
-.||||.+++..+.++-.|...|++...+|.++...+|..+-++|.+++.+ +++.|.+.|.|+|-+++..||+.+++-
T Consensus 257 CGIVYCRTR~~cEq~AI~l~~~Gi~A~AYHAGLK~~ERTeVQe~WM~~~~P--vI~AT~SFGMGVDKp~VRFViHW~~~q 334 (641)
T KOG0352|consen 257 CGIVYCRTRNECEQVAIMLEIAGIPAMAYHAGLKKKERTEVQEKWMNNEIP--VIAATVSFGMGVDKPDVRFVIHWSPSQ 334 (641)
T ss_pred ceEEEeccHHHHHHHHHHhhhcCcchHHHhcccccchhHHHHHHHhcCCCC--EEEEEeccccccCCcceeEEEecCchh
Confidence 479999999999999999999999999999999999999999999998877 888899999999999999999999999
Q ss_pred CccchhHHHHHHhhcCC
Q psy2046 121 NPYNDKQAEDRCHRVGQ 137 (138)
Q Consensus 121 ~~~~~~Q~~gR~~R~GQ 137 (138)
|.+-|.|--||+||.|-
T Consensus 335 n~AgYYQESGRAGRDGk 351 (641)
T KOG0352|consen 335 NLAGYYQESGRAGRDGK 351 (641)
T ss_pred hhHHHHHhccccccCCC
Confidence 99999999999999983
No 110
>COG4098 comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair]
Probab=99.17 E-value=4e-10 Score=81.33 Aligned_cols=105 Identities=20% Similarity=0.267 Sum_probs=88.6
Q ss_pred HHHHHHHHhhhCCCeEEEEeccHHHHHHHHHHHhhc-CC-eEEEEeCCCChHHHHHHHHHHhcCCCceEEEEeccccccc
Q psy2046 27 KLDEILPDLKKNGHRVLIFSQFIFVLDILGHYMDIR-GW-RHLRLDGATQVSSRQELIDEYNRDQDLFAFLLSTKAGGLG 104 (138)
Q Consensus 27 ~l~~ll~~~~~~~~k~iif~~~~~~~~~l~~~l~~~-g~-~~~~i~g~~~~~~R~~~~~~F~~~~~~~vll~~~~~~~~G 104 (138)
++..+|+...+++..++||.+.+...+.+++.|+.. +. ..+.+|+... .|.+.+++|++|... +|++|..+.+|
T Consensus 293 kl~~~lekq~~~~~P~liF~p~I~~~eq~a~~lk~~~~~~~i~~Vhs~d~--~R~EkV~~fR~G~~~--lLiTTTILERG 368 (441)
T COG4098 293 KLKRWLEKQRKTGRPVLIFFPEIETMEQVAAALKKKLPKETIASVHSEDQ--HRKEKVEAFRDGKIT--LLITTTILERG 368 (441)
T ss_pred HHHHHHHHHHhcCCcEEEEecchHHHHHHHHHHHhhCCccceeeeeccCc--cHHHHHHHHHcCceE--EEEEeehhhcc
Confidence 677888887888999999999999999999999543 32 3467777654 899999999999765 88999999999
Q ss_pred cCcCccCEEEEeCCC--CCccchhHHHHHHhhc
Q psy2046 105 INLTAADTVIIHDVD--FNPYNDKQAEDRCHRV 135 (138)
Q Consensus 105 l~l~~~~~vi~~~~~--~~~~~~~Q~~gR~~R~ 135 (138)
+++++.+..|+-... ++.+.+.|..||+||-
T Consensus 369 VTfp~vdV~Vlgaeh~vfTesaLVQIaGRvGRs 401 (441)
T COG4098 369 VTFPNVDVFVLGAEHRVFTESALVQIAGRVGRS 401 (441)
T ss_pred cccccceEEEecCCcccccHHHHHHHhhhccCC
Confidence 999999998886444 8888999999999984
No 111
>TIGR01054 rgy reverse gyrase. Generally, these gyrases are encoded as a single polypeptide. An exception was found in Methanopyrus kandleri, where enzyme is split within the topoisomerase domain, yielding a heterodimer of gene products designated RgyB and RgyA.
Probab=99.16 E-value=3.8e-10 Score=93.62 Aligned_cols=88 Identities=11% Similarity=0.158 Sum_probs=73.8
Q ss_pred HHHHHHHHHHhhhCCCeEEEEeccH---HHHHHHHHHHhhcCCeEEEEeCCCChHHHHHHHHHHhcCCCceEEEEe---c
Q psy2046 25 LKKLDEILPDLKKNGHRVLIFSQFI---FVLDILGHYMDIRGWRHLRLDGATQVSSRQELIDEYNRDQDLFAFLLS---T 98 (138)
Q Consensus 25 ~~~l~~ll~~~~~~~~k~iif~~~~---~~~~~l~~~l~~~g~~~~~i~g~~~~~~R~~~~~~F~~~~~~~vll~~---~ 98 (138)
...+.++++.+ +.++|||++.. +.++.|...|+..|+++..+||+++ ++.+++|++|+. .+|+++ |
T Consensus 315 ~~~L~~ll~~l---~~~~IVFv~t~~~~~~a~~l~~~L~~~g~~a~~lhg~~~----~~~l~~Fr~G~~-~vLVata~~t 386 (1171)
T TIGR01054 315 KETLLEIVKKL---GTGGIVYVSIDYGKEKAEEIAEFLENHGVKAVAYHATKP----KEDYEKFAEGEI-DVLIGVASYY 386 (1171)
T ss_pred HHHHHHHHHHc---CCCEEEEEeccccHHHHHHHHHHHHhCCceEEEEeCCCC----HHHHHHHHcCCC-CEEEEecccc
Confidence 45566666543 56899999998 8999999999999999999999986 368999999865 455554 6
Q ss_pred cccccccCcCc-cCEEEEeCCCC
Q psy2046 99 KAGGLGINLTA-ADTVIIHDVDF 120 (138)
Q Consensus 99 ~~~~~Gl~l~~-~~~vi~~~~~~ 120 (138)
+++++|||+++ +++||++++|-
T Consensus 387 dv~aRGIDip~~V~~vI~~~~P~ 409 (1171)
T TIGR01054 387 GTLVRGLDLPERVRYAVFLGVPK 409 (1171)
T ss_pred CcccccCCCCccccEEEEECCCC
Confidence 99999999998 89999999984
No 112
>COG1197 Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription]
Probab=99.14 E-value=6.8e-10 Score=90.29 Aligned_cols=105 Identities=20% Similarity=0.231 Sum_probs=87.7
Q ss_pred HHHHHhhhCCCeEEEEeccHHHHHHHHHHHhhc--CCeEEEEeCCCChHHHHHHHHHHhcCCCceEEEEeccccccccCc
Q psy2046 30 EILPDLKKNGHRVLIFSQFIFVLDILGHYMDIR--GWRHLRLDGATQVSSRQELIDEYNRDQDLFAFLLSTKAGGLGINL 107 (138)
Q Consensus 30 ~ll~~~~~~~~k~iif~~~~~~~~~l~~~l~~~--g~~~~~i~g~~~~~~R~~~~~~F~~~~~~~vll~~~~~~~~Gl~l 107 (138)
.++.++.+ |.++---.+..+.++.++..|+.. ...+.+.||.|+..+-++++.+|.++... +|+||.....|+|+
T Consensus 795 AI~REl~R-gGQvfYv~NrV~~Ie~~~~~L~~LVPEarI~vaHGQM~e~eLE~vM~~F~~g~~d--VLv~TTIIEtGIDI 871 (1139)
T COG1197 795 AILRELLR-GGQVFYVHNRVESIEKKAERLRELVPEARIAVAHGQMRERELEEVMLDFYNGEYD--VLVCTTIIETGIDI 871 (1139)
T ss_pred HHHHHHhc-CCEEEEEecchhhHHHHHHHHHHhCCceEEEEeecCCCHHHHHHHHHHHHcCCCC--EEEEeeeeecCcCC
Confidence 34455444 557766677788888888888775 44688999999999999999999999766 88899999999999
Q ss_pred CccCEEEEeCCC-CCccchhHHHHHHhhcCC
Q psy2046 108 TAADTVIIHDVD-FNPYNDKQAEDRCHRVGQ 137 (138)
Q Consensus 108 ~~~~~vi~~~~~-~~~~~~~Q~~gR~~R~GQ 137 (138)
|+||++|+-+.. +..++..|-.||+||-.+
T Consensus 872 PnANTiIIe~AD~fGLsQLyQLRGRVGRS~~ 902 (1139)
T COG1197 872 PNANTIIIERADKFGLAQLYQLRGRVGRSNK 902 (1139)
T ss_pred CCCceEEEeccccccHHHHHHhccccCCccc
Confidence 999999998766 789999999999999764
No 113
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.13 E-value=5.6e-10 Score=85.78 Aligned_cols=83 Identities=17% Similarity=0.205 Sum_probs=66.8
Q ss_pred HHHHHHHHhhc--CCeEEEEeCCCChHHH--HHHHHHHhcCCCceEEEEeccccccccCcCccCEEEEeCC--CCCc---
Q psy2046 52 LDILGHYMDIR--GWRHLRLDGATQVSSR--QELIDEYNRDQDLFAFLLSTKAGGLGINLTAADTVIIHDV--DFNP--- 122 (138)
Q Consensus 52 ~~~l~~~l~~~--g~~~~~i~g~~~~~~R--~~~~~~F~~~~~~~vll~~~~~~~~Gl~l~~~~~vi~~~~--~~~~--- 122 (138)
.+.+++.|++. +.++..+|++++..++ ++++++|++++.. +|+.|+..+.|+|+++++.|++++. ..+.
T Consensus 271 te~~~e~l~~~fp~~~v~~~d~d~~~~~~~~~~~l~~f~~g~~~--ILVgT~~i~kG~d~~~v~lV~vl~aD~~l~~pd~ 348 (505)
T TIGR00595 271 TEQVEEELAKLFPGARIARIDSDTTSRKGAHEALLNQFANGKAD--ILIGTQMIAKGHHFPNVTLVGVLDADSGLHSPDF 348 (505)
T ss_pred HHHHHHHHHhhCCCCcEEEEecccccCccHHHHHHHHHhcCCCC--EEEeCcccccCCCCCcccEEEEEcCcccccCccc
Confidence 57788888776 7789999999877666 8999999987654 7788999999999999999976544 3333
Q ss_pred -------cchhHHHHHHhhcC
Q psy2046 123 -------YNDKQAEDRCHRVG 136 (138)
Q Consensus 123 -------~~~~Q~~gR~~R~G 136 (138)
..+.|+.||++|.+
T Consensus 349 ra~E~~~~ll~q~~GRagR~~ 369 (505)
T TIGR00595 349 RAAERGFQLLTQVAGRAGRAE 369 (505)
T ss_pred chHHHHHHHHHHHHhccCCCC
Confidence 34689999999955
No 114
>COG0556 UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair]
Probab=99.09 E-value=4.8e-09 Score=79.57 Aligned_cols=110 Identities=20% Similarity=0.198 Sum_probs=94.3
Q ss_pred hHHHHHHHHHH---hhhCCCeEEEEeccHHHHHHHHHHHhhcCCeEEEEeCCCChHHHHHHHHHHhcCCCceEEEEeccc
Q psy2046 24 KLKKLDEILPD---LKKNGHRVLIFSQFIFVLDILGHYMDIRGWRHLRLDGATQVSSRQELIDEYNRDQDLFAFLLSTKA 100 (138)
Q Consensus 24 K~~~l~~ll~~---~~~~~~k~iif~~~~~~~~~l~~~l~~~g~~~~~i~g~~~~~~R~~~~~~F~~~~~~~vll~~~~~ 100 (138)
+...+.+++.+ ....+++++|-+-++++.+.|.++|.+.|+++..+|+....-+|.+++++.+.|.-. +|+-...
T Consensus 428 ~~~QvdDL~~EI~~r~~~~eRvLVTtLTKkmAEdLT~Yl~e~gikv~YlHSdidTlER~eIirdLR~G~~D--vLVGINL 505 (663)
T COG0556 428 TKGQVDDLLSEIRKRVAKNERVLVTTLTKKMAEDLTEYLKELGIKVRYLHSDIDTLERVEIIRDLRLGEFD--VLVGINL 505 (663)
T ss_pred CCCcHHHHHHHHHHHHhcCCeEEEEeehHHHHHHHHHHHHhcCceEEeeeccchHHHHHHHHHHHhcCCcc--EEEeehh
Confidence 33444445444 356689999999999999999999999999999999999999999999999988765 6777899
Q ss_pred cccccCcCccCEEEEeCCC-----CCccchhHHHHHHhhc
Q psy2046 101 GGLGINLTAADTVIIHDVD-----FNPYNDKQAEDRCHRV 135 (138)
Q Consensus 101 ~~~Gl~l~~~~~vi~~~~~-----~~~~~~~Q~~gR~~R~ 135 (138)
+.+|||+|.++-|.++|.+ -+...++|-+||+.|-
T Consensus 506 LREGLDiPEVsLVAIlDADKeGFLRse~SLIQtIGRAARN 545 (663)
T COG0556 506 LREGLDLPEVSLVAILDADKEGFLRSERSLIQTIGRAARN 545 (663)
T ss_pred hhccCCCcceeEEEEeecCccccccccchHHHHHHHHhhc
Confidence 9999999999999998754 4677899999999883
No 115
>PRK05580 primosome assembly protein PriA; Validated
Probab=98.97 E-value=1.1e-08 Score=81.23 Aligned_cols=84 Identities=19% Similarity=0.181 Sum_probs=67.9
Q ss_pred HHHHHHHHHhhc--CCeEEEEeCCCC--hHHHHHHHHHHhcCCCceEEEEeccccccccCcCccCEEEEeCC--CCCc--
Q psy2046 51 VLDILGHYMDIR--GWRHLRLDGATQ--VSSRQELIDEYNRDQDLFAFLLSTKAGGLGINLTAADTVIIHDV--DFNP-- 122 (138)
Q Consensus 51 ~~~~l~~~l~~~--g~~~~~i~g~~~--~~~R~~~~~~F~~~~~~~vll~~~~~~~~Gl~l~~~~~vi~~~~--~~~~-- 122 (138)
..+.+++.|++. +.++..+|++++ ..++++++++|++++.. +|+.|+..+.|+|+++++.|++++. +.+.
T Consensus 438 G~e~~~e~l~~~fp~~~v~~~~~d~~~~~~~~~~~l~~f~~g~~~--ILVgT~~iakG~d~p~v~lV~il~aD~~l~~pd 515 (679)
T PRK05580 438 GTERLEEELAELFPEARILRIDRDTTRRKGALEQLLAQFARGEAD--ILIGTQMLAKGHDFPNVTLVGVLDADLGLFSPD 515 (679)
T ss_pred cHHHHHHHHHHhCCCCcEEEEeccccccchhHHHHHHHHhcCCCC--EEEEChhhccCCCCCCcCEEEEEcCchhccCCc
Confidence 356788888775 778999999986 46799999999987654 7788999999999999999977654 3343
Q ss_pred --------cchhHHHHHHhhcC
Q psy2046 123 --------YNDKQAEDRCHRVG 136 (138)
Q Consensus 123 --------~~~~Q~~gR~~R~G 136 (138)
..+.|+.||++|.|
T Consensus 516 fra~Er~~~~l~q~~GRagR~~ 537 (679)
T PRK05580 516 FRASERTFQLLTQVAGRAGRAE 537 (679)
T ss_pred cchHHHHHHHHHHHHhhccCCC
Confidence 35789999999955
No 116
>COG1204 Superfamily II helicase [General function prediction only]
Probab=98.94 E-value=3.9e-09 Score=84.40 Aligned_cols=110 Identities=23% Similarity=0.193 Sum_probs=85.0
Q ss_pred hHHHHHHHHHHhhhCCCeEEEEeccHHHHHHHHHHHhhc-------------------------------------CCeE
Q psy2046 24 KLKKLDEILPDLKKNGHRVLIFSQFIFVLDILGHYMDIR-------------------------------------GWRH 66 (138)
Q Consensus 24 K~~~l~~ll~~~~~~~~k~iif~~~~~~~~~l~~~l~~~-------------------------------------g~~~ 66 (138)
+-+.+.+++.+..+.+.+++||++++......+..+... ...+
T Consensus 238 ~~~~~~~~v~~~~~~~~qvLvFv~sR~~a~~~A~~l~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~l~e~v~~Gv 317 (766)
T COG1204 238 IDNLALELVLESLAEGGQVLVFVHSRKEAEKTAKKLRIKMSATLSDDEKIVLDEGASPILIPETPTSEDEELAELVLRGV 317 (766)
T ss_pred chHHHHHHHHHHHhcCCeEEEEEecCchHHHHHHHHHHHHhhcCChhhhhhccccccccccccccccchHHHHHHHHhCc
Confidence 345666777777788899999999998877666666520 0124
Q ss_pred EEEeCCCChHHHHHHHHHHhcCCCceEEEEeccccccccCcCccCEEEEeCCC----------CCccchhHHHHHHhhcC
Q psy2046 67 LRLDGATQVSSRQELIDEYNRDQDLFAFLLSTKAGGLGINLTAADTVIIHDVD----------FNPYNDKQAEDRCHRVG 136 (138)
Q Consensus 67 ~~i~g~~~~~~R~~~~~~F~~~~~~~vll~~~~~~~~Gl~l~~~~~vi~~~~~----------~~~~~~~Q~~gR~~R~G 136 (138)
...|++++.++|.-+-+.|+.+... +|++|.+.+.|+|+| |..||+-|.. -+.-++.|..||+||+|
T Consensus 318 afHhAGL~~~~R~~vE~~Fr~g~ik--Vlv~TpTLA~GVNLP-A~~VIIk~~~~y~~~~g~~~i~~~dv~QM~GRAGRPg 394 (766)
T COG1204 318 AFHHAGLPREDRQLVEDAFRKGKIK--VLVSTPTLAAGVNLP-ARTVIIKDTRRYDPKGGIVDIPVLDVLQMAGRAGRPG 394 (766)
T ss_pred cccccCCCHHHHHHHHHHHhcCCce--EEEechHHhhhcCCc-ceEEEEeeeEEEcCCCCeEECchhhHhhccCcCCCCC
Confidence 5688999999999999999998654 788999999999999 6666664332 24567889999999998
No 117
>PRK12903 secA preprotein translocase subunit SecA; Reviewed
Probab=98.91 E-value=1.1e-08 Score=81.72 Aligned_cols=115 Identities=20% Similarity=0.192 Sum_probs=94.3
Q ss_pred cccCchHHHHHHHHHHhhhCCCeEEEEeccHHHHHHHHHHHhhcCCeEEEEeCCCChHHHHHHHHHHhcCCCceEEEEec
Q psy2046 19 VVESGKLKKLDEILPDLKKNGHRVLIFSQFIFVLDILGHYMDIRGWRHLRLDGATQVSSRQELIDEYNRDQDLFAFLLST 98 (138)
Q Consensus 19 ~~~s~K~~~l~~ll~~~~~~~~k~iif~~~~~~~~~l~~~l~~~g~~~~~i~g~~~~~~R~~~~~~F~~~~~~~vll~~~ 98 (138)
.....|+.++.+-+....+.|..+||.+.+++..+.|+..|.+.|+++.+++.... +++..+=+ +.|.. ..+.++|
T Consensus 406 ~t~~~K~~Aii~ei~~~~~~gqPVLVgT~SIe~SE~ls~~L~~~gi~h~vLNAk~~--e~EA~IIa-~AG~~-GaVTIAT 481 (925)
T PRK12903 406 GTKHAKWKAVVKEVKRVHKKGQPILIGTAQVEDSETLHELLLEANIPHTVLNAKQN--AREAEIIA-KAGQK-GAITIAT 481 (925)
T ss_pred EcHHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHCCCCceeecccch--hhHHHHHH-hCCCC-CeEEEec
Confidence 34458999999988888889999999999999999999999999999999988643 44443332 34533 3477789
Q ss_pred cccccccCcCccC--------EEEEeCCCCCccchhHHHHHHhhcCC
Q psy2046 99 KAGGLGINLTAAD--------TVIIHDVDFNPYNDKQAEDRCHRVGQ 137 (138)
Q Consensus 99 ~~~~~Gl~l~~~~--------~vi~~~~~~~~~~~~Q~~gR~~R~GQ 137 (138)
..+|+|-|+.-.. |||..+.+-+.....|..||++|.|.
T Consensus 482 NMAGRGTDI~Lg~~V~~~GGLhVIgTerheSrRIDnQLrGRaGRQGD 528 (925)
T PRK12903 482 NMAGRGTDIKLSKEVLELGGLYVLGTDKAESRRIDNQLRGRSGRQGD 528 (925)
T ss_pred ccccCCcCccCchhHHHcCCcEEEecccCchHHHHHHHhcccccCCC
Confidence 9999999987443 89999999888889999999999995
No 118
>COG1205 Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only]
Probab=98.88 E-value=6.7e-09 Score=83.96 Aligned_cols=114 Identities=22% Similarity=0.235 Sum_probs=99.3
Q ss_pred chHHHHHHHHHHhhhCCCeEEEEeccHHHHHHHH----HHHhhcC----CeEEEEeCCCChHHHHHHHHHHhcCCCceEE
Q psy2046 23 GKLKKLDEILPDLKKNGHRVLIFSQFIFVLDILG----HYMDIRG----WRHLRLDGATQVSSRQELIDEYNRDQDLFAF 94 (138)
Q Consensus 23 ~K~~~l~~ll~~~~~~~~k~iif~~~~~~~~~l~----~~l~~~g----~~~~~i~g~~~~~~R~~~~~~F~~~~~~~vl 94 (138)
++...+..++..+..++-++++|+.+...++.+. ..+...+ .....++|++...+|.++..+|++++.. .
T Consensus 290 s~~~~~~~~~~~~~~~~~~tL~F~~sr~~~e~~~~~~~~~~~~~~~~l~~~v~~~~~~~~~~er~~ie~~~~~g~~~--~ 367 (851)
T COG1205 290 SALAELATLAALLVRNGIQTLVFFRSRKQVELLYLSPRRRLVREGGKLLDAVSTYRAGLHREERRRIEAEFKEGELL--G 367 (851)
T ss_pred chHHHHHHHHHHHHHcCceEEEEEehhhhhhhhhhchhHHHhhcchhhhhheeeccccCCHHHHHHHHHHHhcCCcc--E
Confidence 6788888888888889999999999999888875 4444445 4578899999999999999999998765 7
Q ss_pred EEeccccccccCcCccCEEEEeCCCC-CccchhHHHHHHhhcCCC
Q psy2046 95 LLSTKAGGLGINLTAADTVIIHDVDF-NPYNDKQAEDRCHRVGQT 138 (138)
Q Consensus 95 l~~~~~~~~Gl~l~~~~~vi~~~~~~-~~~~~~Q~~gR~~R~GQt 138 (138)
+++|.++..|+++...+.||....|- ....+.|+.||++|.||.
T Consensus 368 ~~st~AlelgidiG~ldavi~~g~P~~s~~~~~Q~~GRaGR~~~~ 412 (851)
T COG1205 368 VIATNALELGIDIGSLDAVIAYGYPGVSVLSFRQRAGRAGRRGQE 412 (851)
T ss_pred EecchhhhhceeehhhhhHhhcCCCCchHHHHHHhhhhccCCCCC
Confidence 88999999999999999999998887 678999999999999863
No 119
>KOG0383|consensus
Probab=98.80 E-value=2.6e-09 Score=83.70 Aligned_cols=86 Identities=50% Similarity=0.809 Sum_probs=78.4
Q ss_pred ccccCchHHHHHHHHHHhhhCCCeEEEEeccHHHHHHHHHHHhhcCCeEEEEeCCCChHHHHHHHHHHh-cCCCceEEEE
Q psy2046 18 LVVESGKLKKLDEILPDLKKNGHRVLIFSQFIFVLDILGHYMDIRGWRHLRLDGATQVSSRQELIDEYN-RDQDLFAFLL 96 (138)
Q Consensus 18 ~~~~s~K~~~l~~ll~~~~~~~~k~iif~~~~~~~~~l~~~l~~~g~~~~~i~g~~~~~~R~~~~~~F~-~~~~~~vll~ 96 (138)
+.+.++|+..|..+++.+...|+||+||++.+..+|.|++++...+ .|..++|+.+-.+|+..++.|+ .+....++|.
T Consensus 610 l~k~~~k~~~l~~~~~~l~~~ghrvl~~~q~~~~ldlled~~~~~~-~~~r~dG~~~~~~rq~ai~~~n~~~~~~~cfll 688 (696)
T KOG0383|consen 610 LIKASGKLTLLLKMLKKLKSSGHRVLIFSQMIHMLDLLEDYLTYEG-KYERIDGPITGPERQAAIDRFNAPGSNQFCFLL 688 (696)
T ss_pred HHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHhHHHHhccC-cceeccCCccchhhhhhccccCCCCccceEEEe
Confidence 4556789999999999999999999999999999999999999988 9999999999999999999999 4556678999
Q ss_pred eccccccc
Q psy2046 97 STKAGGLG 104 (138)
Q Consensus 97 ~~~~~~~G 104 (138)
||.++|.|
T Consensus 689 stra~g~g 696 (696)
T KOG0383|consen 689 STRAGGLG 696 (696)
T ss_pred ecccccCC
Confidence 99999887
No 120
>PRK12326 preprotein translocase subunit SecA; Reviewed
Probab=98.80 E-value=6.7e-08 Score=76.24 Aligned_cols=115 Identities=19% Similarity=0.214 Sum_probs=93.5
Q ss_pred cccCchHHHHHHHHHHhhhCCCeEEEEeccHHHHHHHHHHHhhcCCeEEEEeCCCChHHHHHHHHHHhcCCCceEEEEec
Q psy2046 19 VVESGKLKKLDEILPDLKKNGHRVLIFSQFIFVLDILGHYMDIRGWRHLRLDGATQVSSRQELIDEYNRDQDLFAFLLST 98 (138)
Q Consensus 19 ~~~s~K~~~l~~ll~~~~~~~~k~iif~~~~~~~~~l~~~l~~~g~~~~~i~g~~~~~~R~~~~~~F~~~~~~~vll~~~ 98 (138)
.....|+.++.+-+....+.|..|||.+.+.+..+.|+..|.+.|+++..++......+ .+++.+ .|.. ..+.++|
T Consensus 407 ~t~~~k~~Aii~ei~~~~~~GrPVLVgt~sI~~SE~ls~~L~~~gI~h~vLNAk~~~~E-A~IIa~--AG~~-gaVTIAT 482 (764)
T PRK12326 407 ATAAEKNDAIVEHIAEVHETGQPVLVGTHDVAESEELAERLRAAGVPAVVLNAKNDAEE-ARIIAE--AGKY-GAVTVST 482 (764)
T ss_pred eCHHHHHHHHHHHHHHHHHcCCCEEEEeCCHHHHHHHHHHHHhCCCcceeeccCchHhH-HHHHHh--cCCC-CcEEEEe
Confidence 33457888888888888899999999999999999999999999999999998754332 344443 3433 3477789
Q ss_pred cccccccCcC---------------ccCEEEEeCCCCCccchhHHHHHHhhcCC
Q psy2046 99 KAGGLGINLT---------------AADTVIIHDVDFNPYNDKQAEDRCHRVGQ 137 (138)
Q Consensus 99 ~~~~~Gl~l~---------------~~~~vi~~~~~~~~~~~~Q~~gR~~R~GQ 137 (138)
..+|+|-|+. +.=|||..+.+-+.....|..||++|.|+
T Consensus 483 NMAGRGTDIkLg~~~~~~~~~V~~~GGLhVIgTerheSrRID~QLrGRaGRQGD 536 (764)
T PRK12326 483 QMAGRGTDIRLGGSDEADRDRVAELGGLHVIGTGRHRSERLDNQLRGRAGRQGD 536 (764)
T ss_pred cCCCCccCeecCCCcccchHHHHHcCCcEEEeccCCchHHHHHHHhcccccCCC
Confidence 9999998876 34478888899899999999999999996
No 121
>COG1203 CRISPR-associated helicase Cas3 [Defense mechanisms]
Probab=98.75 E-value=8.8e-08 Score=76.78 Aligned_cols=103 Identities=19% Similarity=0.225 Sum_probs=80.5
Q ss_pred HHHHhhhCCCeEEEEeccHHHHHHHHHHHhhcCCeEEEEeCCCChHHHHHHHHHHhc--CCCceEEEEeccccccccCcC
Q psy2046 31 ILPDLKKNGHRVLIFSQFIFVLDILGHYMDIRGWRHLRLDGATQVSSRQELIDEYNR--DQDLFAFLLSTKAGGLGINLT 108 (138)
Q Consensus 31 ll~~~~~~~~k~iif~~~~~~~~~l~~~l~~~g~~~~~i~g~~~~~~R~~~~~~F~~--~~~~~vll~~~~~~~~Gl~l~ 108 (138)
.+..-.+++.+++|-+++...+..+...|+..+.++..+||..+...|.+.++.... ......++++|++...|+|+.
T Consensus 432 ~~~~~~~~~~kvlvI~NTV~~Aie~Y~~Lk~~~~~v~LlHSRf~~~dR~~ke~~l~~~~~~~~~~IvVaTQVIEagvDid 511 (733)
T COG1203 432 LISEEVKEGKKVLVIVNTVDRAIELYEKLKEKGPKVLLLHSRFTLKDREEKERELKKLFKQNEGFIVVATQVIEAGVDID 511 (733)
T ss_pred cchhhhccCCcEEEEEecHHHHHHHHHHHHhcCCCEEEEecccchhhHHHHHHHHHHHHhccCCeEEEEeeEEEEEeccc
Confidence 333335667899999999999999999999888779999999999999998886542 112223888999999999986
Q ss_pred ccCEEEEeCCCCCccchhHHHHHHhhcC
Q psy2046 109 AADTVIIHDVDFNPYNDKQAEDRCHRVG 136 (138)
Q Consensus 109 ~~~~vi~~~~~~~~~~~~Q~~gR~~R~G 136 (138)
.+.+|- |+. -....+||.||++|.|
T Consensus 512 -fd~mIT-e~a-PidSLIQR~GRv~R~g 536 (733)
T COG1203 512 -FDVLIT-ELA-PIDSLIQRAGRVNRHG 536 (733)
T ss_pred -cCeeee-cCC-CHHHHHHHHHHHhhcc
Confidence 555544 332 3556889999999998
No 122
>KOG0353|consensus
Probab=98.66 E-value=6.6e-08 Score=71.13 Aligned_cols=104 Identities=16% Similarity=0.131 Sum_probs=89.6
Q ss_pred HHHHHHHHhhh--CCCeEEEEeccHHHHHHHHHHHhhcCCeEEEEeCCCChHHHHHHHHHHhcCCCceEEEEeccccccc
Q psy2046 27 KLDEILPDLKK--NGHRVLIFSQFIFVLDILGHYMDIRGWRHLRLDGATQVSSRQELIDEYNRDQDLFAFLLSTKAGGLG 104 (138)
Q Consensus 27 ~l~~ll~~~~~--~~~k~iif~~~~~~~~~l~~~l~~~g~~~~~i~g~~~~~~R~~~~~~F~~~~~~~vll~~~~~~~~G 104 (138)
...++.+-+.. .|...||||-+..+.+.+...|+.+|+....+|..+.+.+|...-+.|-.++. + +++.|-+.|.|
T Consensus 303 ~~edi~k~i~~~f~gqsgiiyc~sq~d~ekva~alkn~gi~a~~yha~lep~dks~~hq~w~a~ei-q-vivatvafgmg 380 (695)
T KOG0353|consen 303 CIEDIAKLIKGDFAGQSGIIYCFSQKDCEKVAKALKNHGIHAGAYHANLEPEDKSGAHQGWIAGEI-Q-VIVATVAFGMG 380 (695)
T ss_pred HHHHHHHHhccccCCCcceEEEeccccHHHHHHHHHhcCccccccccccCccccccccccccccce-E-EEEEEeeeccc
Confidence 33444443332 36789999999999999999999999999999999999999999999987754 3 66677899999
Q ss_pred cCcCccCEEEEeCCCCCccchhHHHHHH
Q psy2046 105 INLTAADTVIIHDVDFNPYNDKQAEDRC 132 (138)
Q Consensus 105 l~l~~~~~vi~~~~~~~~~~~~Q~~gR~ 132 (138)
+|-|++..||+.+.|-+...|.|+-+|+
T Consensus 381 idkpdvrfvihhsl~ksienyyqasari 408 (695)
T KOG0353|consen 381 IDKPDVRFVIHHSLPKSIENYYQASARI 408 (695)
T ss_pred CCCCCeeEEEecccchhHHHHHHHHHHH
Confidence 9999999999999999999999999997
No 123
>PRK12899 secA preprotein translocase subunit SecA; Reviewed
Probab=98.65 E-value=2.3e-07 Score=74.97 Aligned_cols=113 Identities=20% Similarity=0.290 Sum_probs=92.3
Q ss_pred ccCchHHHHHHHHHHhhhCCCeEEEEeccHHHHHHHHHHHhhcCCeEEEEeCCCChHHHH-HHHHHHhcCCCceEEEEec
Q psy2046 20 VESGKLKKLDEILPDLKKNGHRVLIFSQFIFVLDILGHYMDIRGWRHLRLDGATQVSSRQ-ELIDEYNRDQDLFAFLLST 98 (138)
Q Consensus 20 ~~s~K~~~l~~ll~~~~~~~~k~iif~~~~~~~~~l~~~l~~~g~~~~~i~g~~~~~~R~-~~~~~F~~~~~~~vll~~~ 98 (138)
....|..++.+-+.+.++.|..++|-+.+....+.|+..|.+.|+++..++.... +++ .++.. .|.. ..+.++|
T Consensus 549 t~~~k~~ai~~ei~~~~~~grPvLigt~si~~se~ls~~L~~~gi~h~vLNak~~--~~Ea~iia~--AG~~-g~VTIAT 623 (970)
T PRK12899 549 TEREKYHAIVAEIASIHRKGNPILIGTESVEVSEKLSRILRQNRIEHTVLNAKNH--AQEAEIIAG--AGKL-GAVTVAT 623 (970)
T ss_pred CHHHHHHHHHHHHHHHHhCCCCEEEEeCcHHHHHHHHHHHHHcCCcceecccchh--hhHHHHHHh--cCCC-CcEEEee
Confidence 3357889999888888899999999999999999999999999999999988644 333 34442 3433 3477789
Q ss_pred cccccccCcC--------ccCEEEEeCCCCCccchhHHHHHHhhcCC
Q psy2046 99 KAGGLGINLT--------AADTVIIHDVDFNPYNDKQAEDRCHRVGQ 137 (138)
Q Consensus 99 ~~~~~Gl~l~--------~~~~vi~~~~~~~~~~~~Q~~gR~~R~GQ 137 (138)
..+|+|-|+. +.=|||....+-+.....|..||++|.|.
T Consensus 624 NmAGRGTDIkl~~~v~~~GGLhVIgTer~es~Rid~Ql~GRagRQGd 670 (970)
T PRK12899 624 NMAGRGTDIKLDEEAVAVGGLYVIGTSRHQSRRIDRQLRGRCARLGD 670 (970)
T ss_pred ccccCCcccccCchHHhcCCcEEEeeccCchHHHHHHHhcccccCCC
Confidence 9999998865 33478888999999999999999999996
No 124
>KOG0329|consensus
Probab=98.58 E-value=3.4e-08 Score=69.10 Aligned_cols=43 Identities=21% Similarity=0.258 Sum_probs=40.9
Q ss_pred EEeccccccccCcCccCEEEEeCCCCCccchhHHHHHHhhcCC
Q psy2046 95 LLSTKAGGLGINLTAADTVIIHDVDFNPYNDKQAEDRCHRVGQ 137 (138)
Q Consensus 95 l~~~~~~~~Gl~l~~~~~vi~~~~~~~~~~~~Q~~gR~~R~GQ 137 (138)
+++|+..|+|+++-+.|-+++||+|-++..|.++.+|++|.|-
T Consensus 302 ~vat~lfgrgmdiervNi~~NYdmp~~~DtYlHrv~rAgrfGt 344 (387)
T KOG0329|consen 302 LVATDLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGT 344 (387)
T ss_pred hHHhhhhccccCcccceeeeccCCCCCchHHHHHhhhhhcccc
Confidence 6678999999999999999999999999999999999999995
No 125
>PRK12901 secA preprotein translocase subunit SecA; Reviewed
Probab=98.58 E-value=2.6e-07 Score=75.21 Aligned_cols=114 Identities=19% Similarity=0.277 Sum_probs=93.5
Q ss_pred ccCchHHHHHHHHHHhhhCCCeEEEEeccHHHHHHHHHHHhhcCCeEEEEeCCCChHHHHHHHHHHhcCCCceEEEEecc
Q psy2046 20 VESGKLKKLDEILPDLKKNGHRVLIFSQFIFVLDILGHYMDIRGWRHLRLDGATQVSSRQELIDEYNRDQDLFAFLLSTK 99 (138)
Q Consensus 20 ~~s~K~~~l~~ll~~~~~~~~k~iif~~~~~~~~~l~~~l~~~g~~~~~i~g~~~~~~R~~~~~~F~~~~~~~vll~~~~ 99 (138)
....|+.++.+-+..+.+.|..|||-+.+.+..+.|+..|+..|+++-+++......+. +++.. .|.. ..+-++|.
T Consensus 609 t~~eK~~Aii~ei~~~~~~GrPVLVGT~SVe~SE~lS~~L~~~gI~H~VLNAK~h~~EA-eIVA~--AG~~-GaVTIATN 684 (1112)
T PRK12901 609 TKREKYNAVIEEITELSEAGRPVLVGTTSVEISELLSRMLKMRKIPHNVLNAKLHQKEA-EIVAE--AGQP-GTVTIATN 684 (1112)
T ss_pred CHHHHHHHHHHHHHHHHHCCCCEEEEeCcHHHHHHHHHHHHHcCCcHHHhhccchhhHH-HHHHh--cCCC-CcEEEecc
Confidence 44578999999999999999999999999999999999999999999888886442332 34432 3433 23777899
Q ss_pred ccccccCcC--------ccCEEEEeCCCCCccchhHHHHHHhhcCC
Q psy2046 100 AGGLGINLT--------AADTVIIHDVDFNPYNDKQAEDRCHRVGQ 137 (138)
Q Consensus 100 ~~~~Gl~l~--------~~~~vi~~~~~~~~~~~~Q~~gR~~R~GQ 137 (138)
.+|+|-|+. +.=|||..+.+-+.....|..||++|.|.
T Consensus 685 MAGRGTDIkLg~~V~e~GGL~VIgTerheSrRID~QLrGRaGRQGD 730 (1112)
T PRK12901 685 MAGRGTDIKLSPEVKAAGGLAIIGTERHESRRVDRQLRGRAGRQGD 730 (1112)
T ss_pred CcCCCcCcccchhhHHcCCCEEEEccCCCcHHHHHHHhcccccCCC
Confidence 999998876 55688888999999999999999999995
No 126
>KOG4150|consensus
Probab=98.56 E-value=3.7e-07 Score=70.34 Aligned_cols=118 Identities=15% Similarity=0.132 Sum_probs=94.7
Q ss_pred cccccCchHHHHHHHHHHhhhCCCeEEEEeccHHHHHHHHHHHhh----cCC----eEEEEeCCCChHHHHHHHHHHhcC
Q psy2046 17 DLVVESGKLKKLDEILPDLKKNGHRVLIFSQFIFVLDILGHYMDI----RGW----RHLRLDGATQVSSRQELIDEYNRD 88 (138)
Q Consensus 17 ~~~~~s~K~~~l~~ll~~~~~~~~k~iif~~~~~~~~~l~~~l~~----~g~----~~~~i~g~~~~~~R~~~~~~F~~~ 88 (138)
.-.+.++|+.....++.++...+-++|-||..+..++.+-...+. .+- .+..+.|+-+.++|.++-.+.-.|
T Consensus 503 ~~~~~~~~i~E~s~~~~~~i~~~~R~IAFC~~R~~CEL~~~~~R~I~~ET~~~LV~~i~SYRGGY~A~DRRKIE~~~F~G 582 (1034)
T KOG4150|consen 503 SKSEKSSKVVEVSHLFAEMVQHGLRCIAFCPSRKLCELVLCLTREILAETAPHLVEAITSYRGGYIAEDRRKIESDLFGG 582 (1034)
T ss_pred chhhhhhHHHHHHHHHHHHHHcCCcEEEeccHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhcCccchhhHHHHHHHhhCC
Confidence 345567788888899999888999999999999887765443332 221 134688888888888887776666
Q ss_pred CCceEEEEeccccccccCcCccCEEEEeCCCCCccchhHHHHHHhhcC
Q psy2046 89 QDLFAFLLSTKAGGLGINLTAADTVIIHDVDFNPYNDKQAEDRCHRVG 136 (138)
Q Consensus 89 ~~~~vll~~~~~~~~Gl~l~~~~~vi~~~~~~~~~~~~Q~~gR~~R~G 136 (138)
+-. -+++|.++..|+|+..-+.|+.+.+|.+.+.+.|..||+||-.
T Consensus 583 ~L~--giIaTNALELGIDIG~LDAVl~~GFP~S~aNl~QQ~GRAGRRN 628 (1034)
T KOG4150|consen 583 KLC--GIIATNALELGIDIGHLDAVLHLGFPGSIANLWQQAGRAGRRN 628 (1034)
T ss_pred eee--EEEecchhhhccccccceeEEEccCchhHHHHHHHhccccccC
Confidence 533 5778999999999999999999999999999999999999954
No 127
>PRK13103 secA preprotein translocase subunit SecA; Reviewed
Probab=98.55 E-value=3.1e-07 Score=74.07 Aligned_cols=114 Identities=18% Similarity=0.218 Sum_probs=93.1
Q ss_pred cccCchHHHHHHHHHHhhhCCCeEEEEeccHHHHHHHHHHHhhcCCeEEEEeCCCChHHHHH-HHHHHhcCCCceEEEEe
Q psy2046 19 VVESGKLKKLDEILPDLKKNGHRVLIFSQFIFVLDILGHYMDIRGWRHLRLDGATQVSSRQE-LIDEYNRDQDLFAFLLS 97 (138)
Q Consensus 19 ~~~s~K~~~l~~ll~~~~~~~~k~iif~~~~~~~~~l~~~l~~~g~~~~~i~g~~~~~~R~~-~~~~F~~~~~~~vll~~ 97 (138)
.....|+.++.+-+.++.+.|..|||-+.+.+..+.|+..|++.|+++-.++.... +++. ++. +.|.. ..+.++
T Consensus 429 ~t~~eK~~Ai~~ei~~~~~~GrPVLVGT~SVe~SE~ls~~L~~~gi~h~VLNAk~~--~~EA~IIa--~AG~~-GaVTIA 503 (913)
T PRK13103 429 LTAEEKYAAIITDIKECMALGRPVLVGTATIETSEHMSNLLKKEGIEHKVLNAKYH--EKEAEIIA--QAGRP-GALTIA 503 (913)
T ss_pred cCHHHHHHHHHHHHHHHHhCCCCEEEEeCCHHHHHHHHHHHHHcCCcHHHhccccc--hhHHHHHH--cCCCC-CcEEEe
Confidence 34457999999999999999999999999999999999999999999988887644 3333 344 34433 347778
Q ss_pred ccccccccCcC-------------------------------------ccCEEEEeCCCCCccchhHHHHHHhhcCC
Q psy2046 98 TKAGGLGINLT-------------------------------------AADTVIIHDVDFNPYNDKQAEDRCHRVGQ 137 (138)
Q Consensus 98 ~~~~~~Gl~l~-------------------------------------~~~~vi~~~~~~~~~~~~Q~~gR~~R~GQ 137 (138)
|..+|+|-|+. +.=|||..+.+-+.....|-.||++|.|.
T Consensus 504 TNMAGRGTDIkLg~n~~~~~~~~~~~~~~~~~~~~~~~~~~~e~V~e~GGLhVIgTerheSrRID~QLrGRaGRQGD 580 (913)
T PRK13103 504 TNMAGRGTDILLGGNWEVEVAALENPTPEQIAQIKADWQKRHQQVIEAGGLHVIASERHESRRIDNQLRGRAGRQGD 580 (913)
T ss_pred ccCCCCCCCEecCCchHHHHHhhhhhhHHHHHHHHHHHHhHHHHHHHcCCCEEEeeccCchHHHHHHhccccccCCC
Confidence 99999999974 34478888999999999999999999996
No 128
>PF13871 Helicase_C_4: Helicase_C-like
Probab=98.55 E-value=6.7e-08 Score=68.72 Aligned_cols=57 Identities=21% Similarity=0.275 Sum_probs=46.4
Q ss_pred HHHHHHhcCCCceEEEEeccccccccCcCccC--------EEEEeCCCCCccchhHHHHHHhhcCCC
Q psy2046 80 ELIDEYNRDQDLFAFLLSTKAGGLGINLTAAD--------TVIIHDVDFNPYNDKQAEDRCHRVGQT 138 (138)
Q Consensus 80 ~~~~~F~~~~~~~vll~~~~~~~~Gl~l~~~~--------~vi~~~~~~~~~~~~Q~~gR~~R~GQt 138 (138)
...+.|.+|+.. |+++ +++++.|+.|+... ..|.+++||+....+|..||+||.||.
T Consensus 52 ~e~~~F~~g~k~-v~ii-s~AgstGiSlHAd~~~~nqr~Rv~i~le~pwsad~aiQ~~GR~hRsnQ~ 116 (278)
T PF13871_consen 52 AEKQAFMDGEKD-VAII-SDAGSTGISLHADRRVKNQRRRVHITLELPWSADKAIQQFGRTHRSNQV 116 (278)
T ss_pred HHHHHHhCCCce-EEEE-ecccccccchhccccCCCCCceEEEEeeCCCCHHHHHHHhccccccccc
Confidence 567899998654 4555 59999999998431 237789999999999999999999994
No 129
>COG4096 HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=98.38 E-value=2.2e-06 Score=68.30 Aligned_cols=110 Identities=14% Similarity=0.200 Sum_probs=85.0
Q ss_pred hHHHHHHHHHHhhhC---C---CeEEEEeccHHHHHHHHHHHhhc-----CCeEEEEeCCCChHHHHHHHHHHhcCCCce
Q psy2046 24 KLKKLDEILPDLKKN---G---HRVLIFSQFIFVLDILGHYMDIR-----GWRHLRLDGATQVSSRQELIDEYNRDQDLF 92 (138)
Q Consensus 24 K~~~l~~ll~~~~~~---~---~k~iif~~~~~~~~~l~~~l~~~-----g~~~~~i~g~~~~~~R~~~~~~F~~~~~~~ 92 (138)
....+...+.+.... | .|+||||.....++.+...|... |--+..|+|+..+ -+..++.|...+..-
T Consensus 405 ~~~~V~r~~~~~l~~~~~g~~~~KTIvFa~n~dHAe~i~~~~~~~ype~~~~~a~~IT~d~~~--~q~~Id~f~~ke~~P 482 (875)
T COG4096 405 RTETVARELTEYLKRGATGDEIGKTIVFAKNHDHAERIREALVNEYPEYNGRYAMKITGDAEQ--AQALIDNFIDKEKYP 482 (875)
T ss_pred hHHHHHHHHHHHhccccCCCccCceEEEeeCcHHHHHHHHHHHHhCccccCceEEEEeccchh--hHHHHHHHHhcCCCC
Confidence 344555666555444 2 59999999999999999999764 2225568887653 445788888643333
Q ss_pred EEEEeccccccccCcCccCEEEEeCCCCCccchhHHHHHHhhc
Q psy2046 93 AFLLSTKAGGLGINLTAADTVIIHDVDFNPYNDKQAEDRCHRV 135 (138)
Q Consensus 93 vll~~~~~~~~Gl~l~~~~~vi~~~~~~~~~~~~Q~~gR~~R~ 135 (138)
.+.++.+.+.+|+|.+.+.++|++..-.+...+.|.+||.-|+
T Consensus 483 ~IaitvdlL~TGiDvpev~nlVF~r~VrSktkF~QMvGRGTRl 525 (875)
T COG4096 483 RIAITVDLLTTGVDVPEVVNLVFDRKVRSKTKFKQMVGRGTRL 525 (875)
T ss_pred ceEEehhhhhcCCCchheeeeeehhhhhhHHHHHHHhcCcccc
Confidence 4777889999999999999999999999999999999999875
No 130
>TIGR00348 hsdR type I site-specific deoxyribonuclease, HsdR family. Members of this family are assumed to differ from each other in DNA site specificity.
Probab=98.35 E-value=1.2e-05 Score=64.13 Aligned_cols=95 Identities=9% Similarity=0.077 Sum_probs=72.2
Q ss_pred CCeEEEEeccHHHHHHHHHHHhhc-----CCeEEEEeCCCChH---------------------HHHHHHHHHhcCCCce
Q psy2046 39 GHRVLIFSQFIFVLDILGHYMDIR-----GWRHLRLDGATQVS---------------------SRQELIDEYNRDQDLF 92 (138)
Q Consensus 39 ~~k~iif~~~~~~~~~l~~~l~~~-----g~~~~~i~g~~~~~---------------------~R~~~~~~F~~~~~~~ 92 (138)
+.|.+|||.++..+..+.+.|.+. +...+.++++.+.+ ...+++++|+++..+.
T Consensus 514 ~~kamvv~~sr~~a~~~~~~l~~~~~~~~~~~~vv~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fk~~~~~~ 593 (667)
T TIGR00348 514 KFKAMVVAISRYACVEEKNALDEELNEKFEASAIVMTGKESDDAEIRDYNKHIRTKFDKSDGFEIYYKDLERFKKEENPK 593 (667)
T ss_pred cCceeEEEecHHHHHHHHHHHHhhcccccCCeeEEecCCccchhHHHHHHHHhccccccchhhhHHHHHHHHhcCCCCce
Confidence 479999999999988888887554 34556677764432 2247899998765555
Q ss_pred EEEEeccccccccCcCccCEEEEeCCCCCccchhHHHHHHhhc
Q psy2046 93 AFLLSTKAGGLGINLTAADTVIIHDVDFNPYNDKQAEDRCHRV 135 (138)
Q Consensus 93 vll~~~~~~~~Gl~l~~~~~vi~~~~~~~~~~~~Q~~gR~~R~ 135 (138)
+|+..+...+|.|.|..+++++.-|.-+. .+.|++||+-|+
T Consensus 594 -ilIVvdmllTGFDaP~l~tLyldKplk~h-~LlQai~R~nR~ 634 (667)
T TIGR00348 594 -LLIVVDMLLTGFDAPILNTLYLDKPLKYH-GLLQAIARTNRI 634 (667)
T ss_pred -EEEEEcccccccCCCccceEEEecccccc-HHHHHHHHhccc
Confidence 44556999999999999999987776554 478999999994
No 131
>CHL00122 secA preprotein translocase subunit SecA; Validated
Probab=98.35 E-value=6.6e-06 Score=66.34 Aligned_cols=86 Identities=16% Similarity=0.261 Sum_probs=67.5
Q ss_pred ccCchHHHHHHHHHHhhhCCCeEEEEeccHHHHHHHHHHHhhcCCeEEEEeCCCChHHHH-HHHHHHhcCCCceEEEEec
Q psy2046 20 VESGKLKKLDEILPDLKKNGHRVLIFSQFIFVLDILGHYMDIRGWRHLRLDGATQVSSRQ-ELIDEYNRDQDLFAFLLST 98 (138)
Q Consensus 20 ~~s~K~~~l~~ll~~~~~~~~k~iif~~~~~~~~~l~~~l~~~g~~~~~i~g~~~~~~R~-~~~~~F~~~~~~~vll~~~ 98 (138)
....|+.++.+-+....+.|..++|-+.+++..+.|+..|...|+++..++......+++ +++.. .|.. ..+.++|
T Consensus 405 t~~~K~~AI~~ei~~~~~~grPVLIgT~SIe~SE~ls~~L~~~gi~h~vLNAk~~~~~~EA~IIA~--AG~~-G~VTIAT 481 (870)
T CHL00122 405 DELSKWRAIADECLQMHQTGRPILIGTTTIEKSELLSQLLKEYRLPHQLLNAKPENVRRESEIVAQ--AGRK-GSITIAT 481 (870)
T ss_pred CHHHHHHHHHHHHHHHHhcCCCEEEeeCCHHHHHHHHHHHHHcCCccceeeCCCccchhHHHHHHh--cCCC-CcEEEec
Confidence 344688888888888889999999999999999999999999999999999874332333 35543 3433 3477789
Q ss_pred cccccccCcC
Q psy2046 99 KAGGLGINLT 108 (138)
Q Consensus 99 ~~~~~Gl~l~ 108 (138)
..+|+|-|+.
T Consensus 482 NMAGRGTDI~ 491 (870)
T CHL00122 482 NMAGRGTDII 491 (870)
T ss_pred cccCCCcCee
Confidence 9999997754
No 132
>KOG0951|consensus
Probab=98.34 E-value=3.9e-06 Score=69.44 Aligned_cols=94 Identities=22% Similarity=0.223 Sum_probs=72.0
Q ss_pred CeEEEEeccHHHHHHHHHHHh--------------hc-----------------------CCeEEEEeCCCChHHHHHHH
Q psy2046 40 HRVLIFSQFIFVLDILGHYMD--------------IR-----------------------GWRHLRLDGATQVSSRQELI 82 (138)
Q Consensus 40 ~k~iif~~~~~~~~~l~~~l~--------------~~-----------------------g~~~~~i~g~~~~~~R~~~~ 82 (138)
.+++||+++++..-.-+.+++ +. .+.++..|.+++..+|...-
T Consensus 547 ~qVLVFVHsRkET~ktA~aIRd~~le~dtls~fmre~s~s~eilrtea~~~kn~dLkdLLpygfaIHhAGl~R~dR~~~E 626 (1674)
T KOG0951|consen 547 NQVLVFVHSRKETAKTARAIRDKALEEDTLSRFMREDSASREILRTEAGQAKNPDLKDLLPYGFAIHHAGLNRKDRELVE 626 (1674)
T ss_pred CcEEEEEEechHHHHHHHHHHHHHhhhhHHHHHHhcccchhhhhhhhhhcccChhHHHHhhccceeeccCCCcchHHHHH
Confidence 589999999976444443333 10 23577899999999999999
Q ss_pred HHHhcCCCceEEEEeccccccccCcCccCEEEE-----eCCC---C---CccchhHHHHHHhhcC
Q psy2046 83 DEYNRDQDLFAFLLSTKAGGLGINLTAADTVII-----HDVD---F---NPYNDKQAEDRCHRVG 136 (138)
Q Consensus 83 ~~F~~~~~~~vll~~~~~~~~Gl~l~~~~~vi~-----~~~~---~---~~~~~~Q~~gR~~R~G 136 (138)
+-|.++... ++++|...+.|+|+| |..||+ |||. | +|.+..|+.||+||.+
T Consensus 627 dLf~~g~iq--vlvstatlawgvnlp-ahtViikgtqvy~pekg~w~elsp~dv~qmlgragrp~ 688 (1674)
T KOG0951|consen 627 DLFADGHIQ--VLVSTATLAWGVNLP-AHTVIIKGTQVYDPEKGRWTELSPLDVMQMLGRAGRPQ 688 (1674)
T ss_pred HHHhcCcee--EEEeehhhhhhcCCC-cceEEecCccccCcccCccccCCHHHHHHHHhhcCCCc
Confidence 999888644 888999999999998 566665 4443 4 3556779999999986
No 133
>TIGR01407 dinG_rel DnaQ family exonuclease/DinG family helicase, putative. This model represents a family of proteins in Gram-positive bacteria. The N-terminal region of about 200 amino acids resembles the epsilon subunit of E. coli DNA polymerase III and the homologous region of the Gram-positive type DNA polymerase III alpha subunit. The epsilon subunit contains an exonuclease domain. The remainder of this protein family resembles a predicted ATP-dependent helicase, the DNA damage-inducible protein DinG of E. coli.
Probab=98.33 E-value=9.9e-06 Score=66.23 Aligned_cols=90 Identities=14% Similarity=0.317 Sum_probs=64.0
Q ss_pred HHHHHHHHhhh-CCCeEEEEeccHHHHHHHHHHHhh----cCCeEEEEeCCCChHHHHHHHHHHhcCCCceEEEEecccc
Q psy2046 27 KLDEILPDLKK-NGHRVLIFSQFIFVLDILGHYMDI----RGWRHLRLDGATQVSSRQELIDEYNRDQDLFAFLLSTKAG 101 (138)
Q Consensus 27 ~l~~ll~~~~~-~~~k~iif~~~~~~~~~l~~~l~~----~g~~~~~i~g~~~~~~R~~~~~~F~~~~~~~vll~~~~~~ 101 (138)
.+.+.|..+.. .+.+++||+.+...++.+...|.. .+++ .+..+.. ..|.+++++|+.++.. +|+++++.
T Consensus 661 ~ia~~i~~l~~~~~g~~LVlftS~~~l~~v~~~L~~~~~~~~~~--~l~q~~~-~~r~~ll~~F~~~~~~--iLlgt~sf 735 (850)
T TIGR01407 661 EIASYIIEITAITSPKILVLFTSYEMLHMVYDMLNELPEFEGYE--VLAQGIN-GSRAKIKKRFNNGEKA--ILLGTSSF 735 (850)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCHHHHHHHHHHHhhhccccCce--EEecCCC-ccHHHHHHHHHhCCCe--EEEEccee
Confidence 45555555433 456899999999999999999875 2333 2333332 5789999999987544 66678999
Q ss_pred ccccCcCccC--EEEEeCCCCC
Q psy2046 102 GLGINLTAAD--TVIIHDVDFN 121 (138)
Q Consensus 102 ~~Gl~l~~~~--~vi~~~~~~~ 121 (138)
++|+|+++.. .||+...|+-
T Consensus 736 ~EGVD~~g~~l~~viI~~LPf~ 757 (850)
T TIGR01407 736 WEGVDFPGNGLVCLVIPRLPFA 757 (850)
T ss_pred ecccccCCCceEEEEEeCCCCC
Confidence 9999999665 4567776663
No 134
>KOG0950|consensus
Probab=98.30 E-value=1.5e-06 Score=69.87 Aligned_cols=69 Identities=22% Similarity=0.234 Sum_probs=54.6
Q ss_pred eEEEEeCCCChHHHHHHHHHHhcCCCceEEEEeccccccccCcCccCEEEEeCC-----CCCccchhHHHHHHhhcC
Q psy2046 65 RHLRLDGATQVSSRQELIDEYNRDQDLFAFLLSTKAGGLGINLTAADTVIIHDV-----DFNPYNDKQAEDRCHRVG 136 (138)
Q Consensus 65 ~~~~i~g~~~~~~R~~~~~~F~~~~~~~vll~~~~~~~~Gl~l~~~~~vi~~~~-----~~~~~~~~Q~~gR~~R~G 136 (138)
.+++.|.+.+.++|+.+-..|+++... ++++|....-|+|+| |..||+=.| .-....|.|++||++|.|
T Consensus 524 GvAyHhaGLT~eER~~iE~afr~g~i~--vl~aTSTlaaGVNLP-ArRVIiraP~~g~~~l~~~~YkQM~GRAGR~g 597 (1008)
T KOG0950|consen 524 GVAYHHAGLTSEEREIIEAAFREGNIF--VLVATSTLAAGVNLP-ARRVIIRAPYVGREFLTRLEYKQMVGRAGRTG 597 (1008)
T ss_pred cceecccccccchHHHHHHHHHhcCeE--EEEecchhhccCcCC-cceeEEeCCccccchhhhhhHHhhhhhhhhcc
Confidence 356788889999999999999988543 677788899999998 556655333 235668999999999998
No 135
>KOG0952|consensus
Probab=98.28 E-value=6.5e-06 Score=67.07 Aligned_cols=102 Identities=23% Similarity=0.188 Sum_probs=77.8
Q ss_pred HHHhhhCCCeEEEEeccHHHHHHHHHHHhhc----C-------------------CeEEEEeCCCChHHHHHHHHHHhcC
Q psy2046 32 LPDLKKNGHRVLIFSQFIFVLDILGHYMDIR----G-------------------WRHLRLDGATQVSSRQELIDEYNRD 88 (138)
Q Consensus 32 l~~~~~~~~k~iif~~~~~~~~~l~~~l~~~----g-------------------~~~~~i~g~~~~~~R~~~~~~F~~~ 88 (138)
+.+...+|.+++||++.+......+..|.+. | ......|.++..++|...-+.|+.|
T Consensus 342 v~e~~~~g~qVlvFvhsR~~Ti~tA~~l~~~a~~~g~~~~f~~~~~~k~l~elf~~g~~iHhAGm~r~DR~l~E~~F~~G 421 (1230)
T KOG0952|consen 342 VVEFLQEGHQVLVFVHSRNETIRTAKKLRERAETNGEKDLFLPSPRNKQLKELFQQGMGIHHAGMLRSDRQLVEKEFKEG 421 (1230)
T ss_pred HHHHHHcCCeEEEEEecChHHHHHHHHHHHHHHhcCcccccCCChhhHHHHHHHHhhhhhcccccchhhHHHHHHHHhcC
Confidence 3344567899999999998877777766543 1 1234678889999999999999988
Q ss_pred CCceEEEEeccccccccCcCccCEEEEeCC-CCCccc----------hhHHHHHHhhcC
Q psy2046 89 QDLFAFLLSTKAGGLGINLTAADTVIIHDV-DFNPYN----------DKQAEDRCHRVG 136 (138)
Q Consensus 89 ~~~~vll~~~~~~~~Gl~l~~~~~vi~~~~-~~~~~~----------~~Q~~gR~~R~G 136 (138)
... +|++|...+-|+||| |.+||+-.. -|++.. -.|-+||+||++
T Consensus 422 ~i~--vL~cTaTLAwGVNLP-A~aViIKGT~~ydsskg~f~dlgilDVlQifGRAGRPq 477 (1230)
T KOG0952|consen 422 HIK--VLCCTATLAWGVNLP-AYAVIIKGTQVYDSSKGSFVDLGILDVLQIFGRAGRPQ 477 (1230)
T ss_pred Cce--EEEecceeeeccCCc-ceEEEecCCcccccccCceeeehHHHHHHHHhccCCCC
Confidence 655 888999999999998 666665433 355543 569999999986
No 136
>PF13307 Helicase_C_2: Helicase C-terminal domain; PDB: 4A15_A 2VSF_A 3CRV_A 3CRW_1 2VL7_A.
Probab=98.27 E-value=4e-06 Score=55.70 Aligned_cols=81 Identities=23% Similarity=0.231 Sum_probs=54.1
Q ss_pred hCCCeEEEEeccHHHHHHHHHHHhhcCC--eEEEEeCCCChHHHHHHHHHHhcCCCceEEEEecc--ccccccCcCc--c
Q psy2046 37 KNGHRVLIFSQFIFVLDILGHYMDIRGW--RHLRLDGATQVSSRQELIDEYNRDQDLFAFLLSTK--AGGLGINLTA--A 110 (138)
Q Consensus 37 ~~~~k~iif~~~~~~~~~l~~~l~~~g~--~~~~i~g~~~~~~R~~~~~~F~~~~~~~vll~~~~--~~~~Gl~l~~--~ 110 (138)
..+.+++||.++-..++.+.+.++..+. ....+.- +..++.+.++.|+.++.. +|+++. ...+|+|+++ +
T Consensus 7 ~~~g~~lv~f~Sy~~l~~~~~~~~~~~~~~~~~v~~q--~~~~~~~~l~~~~~~~~~--il~~v~~g~~~EGiD~~~~~~ 82 (167)
T PF13307_consen 7 AVPGGVLVFFPSYRRLEKVYERLKERLEEKGIPVFVQ--GSKSRDELLEEFKRGEGA--ILLAVAGGSFSEGIDFPGDLL 82 (167)
T ss_dssp CCSSEEEEEESSHHHHHHHHTT-TSS-E-ETSCEEES--TCCHHHHHHHHHCCSSSE--EEEEETTSCCGSSS--ECESE
T ss_pred cCCCCEEEEeCCHHHHHHHHHHHHhhcccccceeeec--CcchHHHHHHHHHhccCe--EEEEEecccEEEeecCCCchh
Confidence 3457999999999999999999986531 1112222 245789999999987654 666666 8899999984 6
Q ss_pred CEEEEeCCCCC
Q psy2046 111 DTVIIHDVDFN 121 (138)
Q Consensus 111 ~~vi~~~~~~~ 121 (138)
..||+...|+-
T Consensus 83 r~vii~glPfp 93 (167)
T PF13307_consen 83 RAVIIVGLPFP 93 (167)
T ss_dssp EEEEEES----
T ss_pred heeeecCCCCC
Confidence 67899888863
No 137
>PRK08074 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=98.14 E-value=5.6e-05 Score=62.44 Aligned_cols=96 Identities=17% Similarity=0.200 Sum_probs=64.0
Q ss_pred HHHHHHHHHhhh-CCCeEEEEeccHHHHHHHHHHHhhcCC--eEEEEeCCCChHHHHHHHHHHhcCCCceEEEEeccccc
Q psy2046 26 KKLDEILPDLKK-NGHRVLIFSQFIFVLDILGHYMDIRGW--RHLRLDGATQVSSRQELIDEYNRDQDLFAFLLSTKAGG 102 (138)
Q Consensus 26 ~~l~~ll~~~~~-~~~k~iif~~~~~~~~~l~~~l~~~g~--~~~~i~g~~~~~~R~~~~~~F~~~~~~~vll~~~~~~~ 102 (138)
..+.+.|.++.. .+.+++||..+...+..+.+.|..... .+..+.=+++...|.+++++|+.++.. +|+.+.+..
T Consensus 738 ~~la~~i~~l~~~~~g~~LVLFtSy~~l~~v~~~l~~~~~~~~~~ll~Qg~~~~~r~~l~~~F~~~~~~--iLlG~~sFw 815 (928)
T PRK08074 738 EEVAAYIAKIAKATKGRMLVLFTSYEMLKKTYYNLKNEEELEGYVLLAQGVSSGSRARLTKQFQQFDKA--ILLGTSSFW 815 (928)
T ss_pred HHHHHHHHHHHHhCCCCEEEEECCHHHHHHHHHHHhhcccccCceEEecCCCCCCHHHHHHHHHhcCCe--EEEecCccc
Confidence 455666655543 445777777778888888888865322 122222123334688999999976543 555678999
Q ss_pred cccCcCcc--CEEEEeCCCC-Ccc
Q psy2046 103 LGINLTAA--DTVIIHDVDF-NPY 123 (138)
Q Consensus 103 ~Gl~l~~~--~~vi~~~~~~-~~~ 123 (138)
+|+|+++. +.||+.-.|+ +|.
T Consensus 816 EGVD~pg~~l~~viI~kLPF~~p~ 839 (928)
T PRK08074 816 EGIDIPGDELSCLVIVRLPFAPPD 839 (928)
T ss_pred CccccCCCceEEEEEecCCCCCCC
Confidence 99999954 7888888787 344
No 138
>COG1199 DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair]
Probab=98.10 E-value=3.8e-05 Score=61.10 Aligned_cols=93 Identities=17% Similarity=0.225 Sum_probs=67.2
Q ss_pred HHHHHHHHHHhh-hCCCeEEEEeccHHHHHHHHHHHhhcCCe-EEEEeCCCChHHHHHHHHHHhcCCCceEEEEeccccc
Q psy2046 25 LKKLDEILPDLK-KNGHRVLIFSQFIFVLDILGHYMDIRGWR-HLRLDGATQVSSRQELIDEYNRDQDLFAFLLSTKAGG 102 (138)
Q Consensus 25 ~~~l~~ll~~~~-~~~~k~iif~~~~~~~~~l~~~l~~~g~~-~~~i~g~~~~~~R~~~~~~F~~~~~~~vll~~~~~~~ 102 (138)
...+...+..+. ..+.+++||..+-..+..+.+.++..... .+...|.. .+...+++|+.+... .+++.+....
T Consensus 464 ~~~~~~~i~~~~~~~~~~~lvlF~Sy~~l~~~~~~~~~~~~~~~v~~q~~~---~~~~~l~~f~~~~~~-~~lv~~gsf~ 539 (654)
T COG1199 464 LAKLAAYLREILKASPGGVLVLFPSYEYLKRVAERLKDERSTLPVLTQGED---EREELLEKFKASGEG-LILVGGGSFW 539 (654)
T ss_pred HHHHHHHHHHHHhhcCCCEEEEeccHHHHHHHHHHHhhcCccceeeecCCC---cHHHHHHHHHHhcCC-eEEEeecccc
Confidence 444555554443 33458999999999999999999876553 34555544 456899999976552 4788889999
Q ss_pred cccCcCcc--CEEEEeCCCCC
Q psy2046 103 LGINLTAA--DTVIIHDVDFN 121 (138)
Q Consensus 103 ~Gl~l~~~--~~vi~~~~~~~ 121 (138)
+|+|+++- ..||+...||-
T Consensus 540 EGVD~~g~~l~~vvI~~lPfp 560 (654)
T COG1199 540 EGVDFPGDALRLVVIVGLPFP 560 (654)
T ss_pred CcccCCCCCeeEEEEEecCCC
Confidence 99999944 77888888773
No 139
>COG1643 HrpA HrpA-like helicases [DNA replication, recombination, and repair]
Probab=98.04 E-value=2.5e-05 Score=63.31 Aligned_cols=108 Identities=14% Similarity=0.153 Sum_probs=76.3
Q ss_pred HHHHHHHHhhhC-CCeEEEEeccHHHHHHHHHHHhh----cCCeEEEEeCCCChHHHHHHHHHHhcCCCceEEEEecccc
Q psy2046 27 KLDEILPDLKKN-GHRVLIFSQFIFVLDILGHYMDI----RGWRHLRLDGATQVSSRQELIDEYNRDQDLFAFLLSTKAG 101 (138)
Q Consensus 27 ~l~~ll~~~~~~-~~k~iif~~~~~~~~~l~~~l~~----~g~~~~~i~g~~~~~~R~~~~~~F~~~~~~~vll~~~~~~ 101 (138)
.+...+.....+ ...++||-.-...++...+.|.+ ..+.+..+||.++.++..++++--..+. +-++++|+++
T Consensus 246 ai~~~v~~~~~~~~GdILvFLpG~~EI~~~~~~L~~~~l~~~~~i~PLy~~L~~~eQ~rvF~p~~~~~--RKVVlATNIA 323 (845)
T COG1643 246 AIVAAVDIHLREGSGSILVFLPGQREIERTAEWLEKAELGDDLEILPLYGALSAEEQVRVFEPAPGGK--RKVVLATNIA 323 (845)
T ss_pred HHHHHHHHhccCCCCCEEEECCcHHHHHHHHHHHHhccccCCcEEeeccccCCHHHHHhhcCCCCCCc--ceEEEEcccc
Confidence 344444443333 35799999999999999999987 3467889999999998888555432221 3378899999
Q ss_pred ccccCcCccCEEEEe--------CCCC----------CccchhHHHHHHhhcC
Q psy2046 102 GLGINLTAADTVIIH--------DVDF----------NPYNDKQAEDRCHRVG 136 (138)
Q Consensus 102 ~~Gl~l~~~~~vi~~--------~~~~----------~~~~~~Q~~gR~~R~G 136 (138)
.++|+++++.+||=- ++-- +-+.-.||-||+||.+
T Consensus 324 ETSLTI~gIr~VIDsG~ak~~~y~~~~g~~~L~~~~ISqAsA~QRaGRAGR~~ 376 (845)
T COG1643 324 ETSLTIPGIRYVIDSGLAKEKRYDPRTGLTRLETEPISKASADQRAGRAGRTG 376 (845)
T ss_pred ccceeeCCeEEEecCCcccccccccccCceeeeEEEechhhhhhhccccccCC
Confidence 999999999998742 2211 1223348899998865
No 140
>PRK07246 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=98.00 E-value=0.00013 Score=59.51 Aligned_cols=91 Identities=14% Similarity=0.199 Sum_probs=62.8
Q ss_pred HHHHHHHHHhhhCCCeEEEEeccHHHHHHHHHHHhhcCCeEEEEeCCCChHHHHHHHHHHhcCCCceEEEEecccccccc
Q psy2046 26 KKLDEILPDLKKNGHRVLIFSQFIFVLDILGHYMDIRGWRHLRLDGATQVSSRQELIDEYNRDQDLFAFLLSTKAGGLGI 105 (138)
Q Consensus 26 ~~l~~ll~~~~~~~~k~iif~~~~~~~~~l~~~l~~~g~~~~~i~g~~~~~~R~~~~~~F~~~~~~~vll~~~~~~~~Gl 105 (138)
..+.+.+..+...+.+++|+..+...++.+.+.|....++. ..-|... .+.+++++|+.++.. +|+.+.+..+|+
T Consensus 634 ~~~~~~i~~~~~~~g~~LVLFtS~~~l~~v~~~l~~~~~~~-l~Qg~~~--~~~~l~~~F~~~~~~--vLlG~~sFwEGV 708 (820)
T PRK07246 634 EEIAKRLEELKQLQQPILVLFNSKKHLLAVSDLLDQWQVSH-LAQEKNG--TAYNIKKRFDRGEQQ--ILLGLGSFWEGV 708 (820)
T ss_pred HHHHHHHHHHHhcCCCEEEEECcHHHHHHHHHHHhhcCCcE-EEeCCCc--cHHHHHHHHHcCCCe--EEEecchhhCCC
Confidence 35666665555555677777777888888888887654443 5556433 366799999976443 566679999999
Q ss_pred CcC--ccCEEEEeCCCCC
Q psy2046 106 NLT--AADTVIIHDVDFN 121 (138)
Q Consensus 106 ~l~--~~~~vi~~~~~~~ 121 (138)
|++ ....+|+.-.|+-
T Consensus 709 D~p~~~~~~viI~kLPF~ 726 (820)
T PRK07246 709 DFVQADRMIEVITRLPFD 726 (820)
T ss_pred CCCCCCeEEEEEecCCCC
Confidence 997 3455677776754
No 141
>PRK12902 secA preprotein translocase subunit SecA; Reviewed
Probab=97.86 E-value=0.00027 Score=57.53 Aligned_cols=85 Identities=19% Similarity=0.316 Sum_probs=67.6
Q ss_pred cCchHHHHHHHHHHhhhCCCeEEEEeccHHHHHHHHHHHhhcCCeEEEEeCCCChHHHH-HHHHHHhcCCCceEEEEecc
Q psy2046 21 ESGKLKKLDEILPDLKKNGHRVLIFSQFIFVLDILGHYMDIRGWRHLRLDGATQVSSRQ-ELIDEYNRDQDLFAFLLSTK 99 (138)
Q Consensus 21 ~s~K~~~l~~ll~~~~~~~~k~iif~~~~~~~~~l~~~l~~~g~~~~~i~g~~~~~~R~-~~~~~F~~~~~~~vll~~~~ 99 (138)
...|+.++.+-+.+..+.|..++|-+.+.+..+.|+..|.+.|+++..++......+++ .++.. .|... .+-++|.
T Consensus 421 ~~~K~~Ai~~ei~~~~~~GrPVLIgT~SVe~SE~ls~~L~~~gi~h~vLNAk~~~~~~EA~IIa~--AG~~G-aVTIATN 497 (939)
T PRK12902 421 EIAKWRAVANETAEMHKQGRPVLVGTTSVEKSELLSALLQEQGIPHNLLNAKPENVEREAEIVAQ--AGRKG-AVTIATN 497 (939)
T ss_pred HHHHHHHHHHHHHHHHhCCCCEEEeeCCHHHHHHHHHHHHHcCCchheeeCCCcchHhHHHHHHh--cCCCC-cEEEecc
Confidence 35789999988888889999999999999999999999999999999999863333333 34443 34333 3777889
Q ss_pred ccccccCcC
Q psy2046 100 AGGLGINLT 108 (138)
Q Consensus 100 ~~~~Gl~l~ 108 (138)
.+|+|-|+.
T Consensus 498 MAGRGTDIk 506 (939)
T PRK12902 498 MAGRGTDII 506 (939)
T ss_pred CCCCCcCEe
Confidence 999997754
No 142
>TIGR00604 rad3 DNA repair helicase (rad3). All proteins in this family for which funcitons are known are DNA-DNA helicases that funciton in the initiation of transcription and nucleotide excision repair as part of the TFIIH complex. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.79 E-value=0.0004 Score=55.93 Aligned_cols=94 Identities=16% Similarity=0.261 Sum_probs=63.3
Q ss_pred HHHHHHHHHHhhh-CCCeEEEEeccHHHHHHHHHHHhhcCC-------eEEEEeCCCChHHHHHHHHHHhcC---CCceE
Q psy2046 25 LKKLDEILPDLKK-NGHRVLIFSQFIFVLDILGHYMDIRGW-------RHLRLDGATQVSSRQELIDEYNRD---QDLFA 93 (138)
Q Consensus 25 ~~~l~~ll~~~~~-~~~k~iif~~~~~~~~~l~~~l~~~g~-------~~~~i~g~~~~~~R~~~~~~F~~~---~~~~v 93 (138)
...+.+.|.++.+ .+..++||.++-..++.+.+.+...|. ..+.+-+... .++.+++++|+.. ....
T Consensus 507 ~~~l~~~i~~~~~~~pgg~lvfFpSy~~l~~v~~~~~~~~~~~~i~~~k~i~~E~~~~-~~~~~~l~~f~~~~~~~~ga- 584 (705)
T TIGR00604 507 VRNLGELLVEFSKIIPDGIVVFFPSYSYLENIVSTWKEMGILENIEKKKLIFVETKDA-QETSDALERYKQAVSEGRGA- 584 (705)
T ss_pred HHHHHHHHHHHhhcCCCcEEEEccCHHHHHHHHHHHHhcCHHHHHhcCCCEEEeCCCc-chHHHHHHHHHHHHhcCCce-
Confidence 4556666665544 356788998888888888877765432 2334444322 5789999999742 1222
Q ss_pred EEEec--cccccccCcCc--cCEEEEeCCCC
Q psy2046 94 FLLST--KAGGLGINLTA--ADTVIIHDVDF 120 (138)
Q Consensus 94 ll~~~--~~~~~Gl~l~~--~~~vi~~~~~~ 120 (138)
+|+++ ...++|+|+++ +..||++..|+
T Consensus 585 vL~av~gGk~sEGIDf~~~~~r~ViivGlPf 615 (705)
T TIGR00604 585 VLLSVAGGKVSEGIDFCDDLGRAVIMVGIPY 615 (705)
T ss_pred EEEEecCCcccCccccCCCCCcEEEEEccCC
Confidence 55555 67889999984 68899998887
No 143
>KOG0947|consensus
Probab=97.75 E-value=0.00017 Score=58.86 Aligned_cols=107 Identities=19% Similarity=0.220 Sum_probs=76.4
Q ss_pred HHHHHHHHhhhCC-CeEEEEeccHHHHHHHHHHHhhcCC---------------------------------------eE
Q psy2046 27 KLDEILPDLKKNG-HRVLIFSQFIFVLDILGHYMDIRGW---------------------------------------RH 66 (138)
Q Consensus 27 ~l~~ll~~~~~~~-~k~iif~~~~~~~~~l~~~l~~~g~---------------------------------------~~ 66 (138)
...+++..+.... -.+|+|+-++.-+|.-+++|..... .+
T Consensus 554 ~~l~lin~L~k~~lLP~VvFvFSkkrCde~a~~L~~~nL~~~~EKseV~lfl~k~~~rLk~~DR~LPQvl~m~~ll~RGi 633 (1248)
T KOG0947|consen 554 TWLDLINHLRKKNLLPVVVFVFSKKRCDEYADYLTNLNLTDSKEKSEVHLFLSKAVARLKGEDRNLPQVLSMRSLLLRGI 633 (1248)
T ss_pred hHHHHHHHHhhcccCceEEEEEccccHHHHHHHHhccCcccchhHHHHHHHHHHHHHhcChhhccchHHHHHHHHHhhcc
Confidence 4566666655443 4799999988888887777764322 24
Q ss_pred EEEeCCCChHHHHHHHHHHhcCCCceEEEEeccccccccCcCccCEEEEeCC---------CCCccchhHHHHHHhhcC
Q psy2046 67 LRLDGATQVSSRQELIDEYNRDQDLFAFLLSTKAGGLGINLTAADTVIIHDV---------DFNPYNDKQAEDRCHRVG 136 (138)
Q Consensus 67 ~~i~g~~~~~~R~~~~~~F~~~~~~~vll~~~~~~~~Gl~l~~~~~vi~~~~---------~~~~~~~~Q~~gR~~R~G 136 (138)
++.||+.-+--++-+---|..| -++ +|.+|.+.+.|+|.| |.+||+-+. ..+|..|.|..||+||-|
T Consensus 634 aVHH~GlLPivKE~VE~LFqrG-lVK-VLFATETFAMGVNMP-ARtvVF~Sl~KhDG~efR~L~PGEytQMAGRAGRRG 709 (1248)
T KOG0947|consen 634 AVHHGGLLPIVKEVVELLFQRG-LVK-VLFATETFAMGVNMP-ARTVVFSSLRKHDGNEFRELLPGEYTQMAGRAGRRG 709 (1248)
T ss_pred hhhcccchHHHHHHHHHHHhcC-ceE-EEeehhhhhhhcCCC-ceeEEeeehhhccCcceeecCChhHHhhhccccccc
Confidence 4667776666555566667655 444 667889999999998 666666432 357899999999999988
No 144
>COG1110 Reverse gyrase [DNA replication, recombination, and repair]
Probab=97.71 E-value=0.00046 Score=56.74 Aligned_cols=88 Identities=17% Similarity=0.239 Sum_probs=69.4
Q ss_pred chHHHHHHHHHHhhhCCCeEEEEecc---HHHHHHHHHHHhhcCCeEEEEeCCCChHHHHHHHHHHhcCCCceEEEEe--
Q psy2046 23 GKLKKLDEILPDLKKNGHRVLIFSQF---IFVLDILGHYMDIRGWRHLRLDGATQVSSRQELIDEYNRDQDLFAFLLS-- 97 (138)
Q Consensus 23 ~K~~~l~~ll~~~~~~~~k~iif~~~---~~~~~~l~~~l~~~g~~~~~i~g~~~~~~R~~~~~~F~~~~~~~vll~~-- 97 (138)
+-...+.++++.+ |.-.|||++. .+.++.|+++|+.+|+++..++. .+.+.++.|..|+. .+++..
T Consensus 322 ~~~e~~~elvk~l---G~GgLIfV~~d~G~e~aeel~e~Lr~~Gi~a~~~~a-----~~~~~le~F~~Gei-dvLVGvAs 392 (1187)
T COG1110 322 ESLEKVVELVKKL---GDGGLIFVPIDYGREKAEELAEYLRSHGINAELIHA-----EKEEALEDFEEGEV-DVLVGVAS 392 (1187)
T ss_pred ccHHHHHHHHHHh---CCCeEEEEEcHHhHHHHHHHHHHHHhcCceEEEeec-----cchhhhhhhccCce-eEEEEecc
Confidence 4556666676544 6679999999 78899999999999999999987 33679999998855 445542
Q ss_pred -ccccccccCcC-ccCEEEEeCCC
Q psy2046 98 -TKAGGLGINLT-AADTVIIHDVD 119 (138)
Q Consensus 98 -~~~~~~Gl~l~-~~~~vi~~~~~ 119 (138)
..++-+||||| .+.++|++..|
T Consensus 393 yYG~lVRGlDLP~rirYaIF~GvP 416 (1187)
T COG1110 393 YYGVLVRGLDLPHRIRYAVFYGVP 416 (1187)
T ss_pred cccceeecCCchhheeEEEEecCC
Confidence 33456999998 88899999888
No 145
>KOG0949|consensus
Probab=97.68 E-value=0.0001 Score=60.23 Aligned_cols=70 Identities=23% Similarity=0.240 Sum_probs=56.9
Q ss_pred EEEEeCCCChHHHHHHHHHHhcCCCceEEEEeccccccccCcCccCEEEEeCC-CCCccchhHHHHHHhhcCC
Q psy2046 66 HLRLDGATQVSSRQELIDEYNRDQDLFAFLLSTKAGGLGINLTAADTVIIHDV-DFNPYNDKQAEDRCHRVGQ 137 (138)
Q Consensus 66 ~~~i~g~~~~~~R~~~~~~F~~~~~~~vll~~~~~~~~Gl~l~~~~~vi~~~~-~~~~~~~~Q~~gR~~R~GQ 137 (138)
..+.|++++...|.-+-=-|+.|.- .+|++|.+.+.|+|.|+-..|+.-|. ..+|-.|.|+.||+||-|-
T Consensus 965 iG~HHaglNr~yR~~VEvLFR~g~L--~VlfaT~TLsLGiNMPCrTVvF~gDsLQL~plny~QmaGRAGRRGF 1035 (1330)
T KOG0949|consen 965 IGVHHAGLNRKYRSLVEVLFRQGHL--QVLFATETLSLGINMPCRTVVFAGDSLQLDPLNYKQMAGRAGRRGF 1035 (1330)
T ss_pred ccccccccchHHHHHHHHHhhcCce--EEEEEeeehhcccCCCceeEEEeccccccCchhHHhhhcccccccc
Confidence 3468899999999998889988753 37778999999999996555555444 4799999999999999883
No 146
>COG0653 SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion]
Probab=97.60 E-value=0.00017 Score=58.16 Aligned_cols=115 Identities=23% Similarity=0.244 Sum_probs=85.7
Q ss_pred cccCchHHHHHHHHHHhhhCCCeEEEEeccHHHHHHHHHHHhhcCCeEEEEeCCCChHHHHHHHHHHhcCCCceEEEEec
Q psy2046 19 VVESGKLKKLDEILPDLKKNGHRVLIFSQFIFVLDILGHYMDIRGWRHLRLDGATQVSSRQELIDEYNRDQDLFAFLLST 98 (138)
Q Consensus 19 ~~~s~K~~~l~~ll~~~~~~~~k~iif~~~~~~~~~l~~~l~~~g~~~~~i~g~~~~~~R~~~~~~F~~~~~~~vll~~~ 98 (138)
.....|+.++.+-+.+.+..|.++||-+.+.+..+.++..|.+.|++...+...-. +|+..+=++ .|... .+-++|
T Consensus 409 ~t~~~K~~Aiv~~I~~~~~~gqPvLvgT~sie~SE~ls~~L~~~~i~h~VLNAk~h--~~EA~Iia~-AG~~g-aVTiAT 484 (822)
T COG0653 409 KTEEEKFKAIVEDIKERHEKGQPVLVGTVSIEKSELLSKLLRKAGIPHNVLNAKNH--AREAEIIAQ-AGQPG-AVTIAT 484 (822)
T ss_pred cchHHHHHHHHHHHHHHHhcCCCEEEcCcceecchhHHHHHHhcCCCceeeccccH--HHHHHHHhh-cCCCC-cccccc
Confidence 44557889999999988999999999999999999999999999999988888765 444444443 33232 367789
Q ss_pred cccccccCcCccC-----------EEEEeCCCCCccchhHHHHHHhhcCC
Q psy2046 99 KAGGLGINLTAAD-----------TVIIHDVDFNPYNDKQAEDRCHRVGQ 137 (138)
Q Consensus 99 ~~~~~Gl~l~~~~-----------~vi~~~~~~~~~~~~Q~~gR~~R~GQ 137 (138)
..+|+|-|+.-.. +||-.+-.-+..-.-|-.||+||.|-
T Consensus 485 NMAGRGTDIkLg~~~~~V~~lGGL~VIgTERhESRRIDnQLRGRsGRQGD 534 (822)
T COG0653 485 NMAGRGTDIKLGGNPEFVMELGGLHVIGTERHESRRIDNQLRGRAGRQGD 534 (822)
T ss_pred ccccCCcccccCCCHHHHHHhCCcEEEecccchhhHHHHHhhcccccCCC
Confidence 9999999987333 23433444333334488999999983
No 147
>PF06862 DUF1253: Protein of unknown function (DUF1253); InterPro: IPR010678 This family is defined by a C-terminal region of approximately 500 residues, Digestive organ expansion factor (DEF) is thought to Regulate the p53 pathway to control the expansion growth of digestive organs and is required for the expansion growth of intestine, liver and exocrine pancreas, but not endocrine pancreas [, ].; GO: 0005634 nucleus
Probab=97.53 E-value=0.004 Score=47.44 Aligned_cols=109 Identities=17% Similarity=0.180 Sum_probs=84.0
Q ss_pred cCchHHHHHH-HHHHhh--hCCCeEEEEeccHHHHHHHHHHHhhcCCeEEEEeCCCChHHHHHHHHHHhcCCCceEEEEe
Q psy2046 21 ESGKLKKLDE-ILPDLK--KNGHRVLIFSQFIFVLDILGHYMDIRGWRHLRLDGATQVSSRQELIDEYNRDQDLFAFLLS 97 (138)
Q Consensus 21 ~s~K~~~l~~-ll~~~~--~~~~k~iif~~~~~~~~~l~~~l~~~g~~~~~i~g~~~~~~R~~~~~~F~~~~~~~vll~~ 97 (138)
...+++.+.+ ++-.+. ....+++||.++--+.-.|..+|++.++.++.++--++.++-.++-..|.+|+.. ++|.+
T Consensus 279 ~d~Rf~yF~~~iLP~l~~~~~~~~~LIfIPSYfDfVRlRN~lk~~~~sF~~i~EYts~~~isRAR~~F~~G~~~-iLL~T 357 (442)
T PF06862_consen 279 PDARFKYFTKKILPQLKRDSKMSGTLIFIPSYFDFVRLRNYLKKENISFVQISEYTSNSDISRARSQFFHGRKP-ILLYT 357 (442)
T ss_pred hhHHHHHHHHHHHHHhhhccCCCcEEEEecchhhhHHHHHHHHhcCCeEEEecccCCHHHHHHHHHHHHcCCce-EEEEE
Confidence 3457777666 444444 2346899999999888999999999999999999999999999999999998654 45544
Q ss_pred ccccc--cccCcCccCEEEEeCCCCCccchhHHHHH
Q psy2046 98 TKAGG--LGINLTAADTVIIHDVDFNPYNDKQAEDR 131 (138)
Q Consensus 98 ~~~~~--~Gl~l~~~~~vi~~~~~~~~~~~~Q~~gR 131 (138)
.-+= +=..+.++.+||+|.+|-+|.-|...+.-
T Consensus 358 -ER~HFfrRy~irGi~~viFY~~P~~p~fY~El~n~ 392 (442)
T PF06862_consen 358 -ERFHFFRRYRIRGIRHVIFYGPPENPQFYSELLNM 392 (442)
T ss_pred -hHHhhhhhceecCCcEEEEECCCCChhHHHHHHhh
Confidence 3221 34456789999999999999877655543
No 148
>PF11496 HDA2-3: Class II histone deacetylase complex subunits 2 and 3; InterPro: IPR021006 This entry contains the class II histone deacetylase complex subunits HDA2 and HDA3 is found in fungi. The member from Schizosaccharomyces pombe (Fission yeast) is referred to as Ccq1 in Q10432 from SWISSPROT. These proteins associate with HDA1 to generate the activity of the HDA1 histone deacetylase complex. HDA1 interacts with itself and with the HDA2-HDA3 subcomplex to form a probable tetramer and these interactions are necessary for catalytic activity. The HDA1 histone deacetylase complex is responsible for the deacetylation of lysine residues on the N-terminal part of the core histones (H2A, H2B, H3 and H4). Histone deacetylation gives a tag for epigenetic repression and plays an important role in transcriptional regulation, cell cycle progression and developmental events. HDA2 and HDA3 have a conserved coiled-coil domain towards their C terminus []. ; PDB: 3HGQ_C 3HGT_B.
Probab=97.43 E-value=0.001 Score=48.18 Aligned_cols=110 Identities=17% Similarity=0.183 Sum_probs=66.7
Q ss_pred cccccCchHHHHHHHHHHh-----hhCCCeEEEEeccHHHHHHHHHHHhhcCCeEEEEeCCCChHHHHHHH---------
Q psy2046 17 DLVVESGKLKKLDEILPDL-----KKNGHRVLIFSQFIFVLDILGHYMDIRGWRHLRLDGATQVSSRQELI--------- 82 (138)
Q Consensus 17 ~~~~~s~K~~~l~~ll~~~-----~~~~~k~iif~~~~~~~~~l~~~l~~~g~~~~~i~g~~~~~~R~~~~--------- 82 (138)
+....|+|+..|.+++..+ ...+-+++|.++..+.+|.++.+|...++.+-.+.|..-.++....-
T Consensus 90 ~~~~tS~KF~~L~~Li~~li~~~~~~~~~~ilIv~~~~k~ldllE~~llGk~~~~kr~sg~~l~~~~~~~~~~~~~~~~~ 169 (297)
T PF11496_consen 90 WLAYTSGKFQFLNDLIDSLIDRDRREYPLHILIVSRSGKELDLLEGLLLGKKLNYKRYSGESLYDEKHKVPKNGNTESNS 169 (297)
T ss_dssp HHHHT-HHHHHHHHHHHHH-----TTSSEEEEEEE-STHHHHHHHHHHTTSSSEEEESSS--S--S---S----------
T ss_pred HHHHcCchHHHHHHHHHHHHhhhcccCCceEEEEecCccHHHHHHHHHccCCeeEEecCCCCCcCccccCCccccccccc
Confidence 5667899999999999988 55567999999999999999999999999999999976544443333
Q ss_pred ---HHHh--cCCCceEEEEecccccc----ccCcCccCEEEEeCCCCCccchh
Q psy2046 83 ---DEYN--RDQDLFAFLLSTKAGGL----GINLTAADTVIIHDVDFNPYNDK 126 (138)
Q Consensus 83 ---~~F~--~~~~~~vll~~~~~~~~----Gl~l~~~~~vi~~~~~~~~~~~~ 126 (138)
.... ......+.|++++-... .++-...+.||-+|+.+++....
T Consensus 170 ~~~~~~~~~~~~~~~i~L~ts~~l~~~~~~~~~~~~~d~IIsfD~~~d~~~p~ 222 (297)
T PF11496_consen 170 SNNSKKKDKGSLSVWIHLITSDQLYNNKPPLLSNYNFDLIISFDPSFDTSLPS 222 (297)
T ss_dssp ------------SEEEEEEESS---TTTS--TT-S-EEEEEE-SST--TTSHH
T ss_pred ccccccccccccceEEEEecCccccccCCCccccCCcCEEEEecCCCCCCChH
Confidence 1111 12344556666554433 12334667889999999877543
No 149
>KOG0923|consensus
Probab=97.42 E-value=0.00052 Score=54.20 Aligned_cols=94 Identities=17% Similarity=0.214 Sum_probs=65.8
Q ss_pred CCeEEEEeccHHHHHHHHHHHhhc---------CCeEEEEeCCCChHHHHHHHHHHhcCCCceEEEEeccccccccCcCc
Q psy2046 39 GHRVLIFSQFIFVLDILGHYMDIR---------GWRHLRLDGATQVSSRQELIDEYNRDQDLFAFLLSTKAGGLGINLTA 109 (138)
Q Consensus 39 ~~k~iif~~~~~~~~~l~~~l~~~---------g~~~~~i~g~~~~~~R~~~~~~F~~~~~~~vll~~~~~~~~Gl~l~~ 109 (138)
..-+|||---.+.++..++.|... .+-+..||..++.+...++++- .++..+-+++.|+++.+.|++.+
T Consensus 473 ~GDILVFltGQeEIEt~~e~l~~~~~~LGski~eliv~PiYaNLPselQakIFeP--tP~gaRKVVLATNIAETSlTIdg 550 (902)
T KOG0923|consen 473 LGDILVFLTGQEEIETVKENLKERCRRLGSKIRELIVLPIYANLPSELQAKIFEP--TPPGARKVVLATNIAETSLTIDG 550 (902)
T ss_pred CccEEEEeccHHHHHHHHHHHHHHHHHhccccceEEEeeccccCChHHHHhhcCC--CCCCceeEEEeecchhhceeecC
Confidence 356888887776666655555442 2347789999998888777664 33444557778899999999999
Q ss_pred cCEEEEeCCCC------Cc--------------cchhHHHHHHhhcC
Q psy2046 110 ADTVIIHDVDF------NP--------------YNDKQAEDRCHRVG 136 (138)
Q Consensus 110 ~~~vi~~~~~~------~~--------------~~~~Q~~gR~~R~G 136 (138)
+.+|| ||.+ || +.-.||.||+||.|
T Consensus 551 I~yVi--DpGf~K~nsynprtGmesL~v~piSKAsA~QRaGRAGRtg 595 (902)
T KOG0923|consen 551 IKYVI--DPGFVKQNSYNPRTGMESLLVTPISKASANQRAGRAGRTG 595 (902)
T ss_pred eEEEe--cCccccccCcCCCcCceeEEEeeechhhhhhhccccCCCC
Confidence 98886 4433 22 22339999999977
No 150
>TIGR00596 rad1 DNA repair protein (rad1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford Universit
Probab=97.40 E-value=0.00025 Score=57.73 Aligned_cols=43 Identities=21% Similarity=0.262 Sum_probs=36.4
Q ss_pred cccCchHHHHHHHHHHhhhC---------CCeEEEEeccHHHHHHHHHHHhh
Q psy2046 19 VVESGKLKKLDEILPDLKKN---------GHRVLIFSQFIFVLDILGHYMDI 61 (138)
Q Consensus 19 ~~~s~K~~~l~~ll~~~~~~---------~~k~iif~~~~~~~~~l~~~l~~ 61 (138)
.+..||+..|.++|.++... +.++||||++..++..|.++|..
T Consensus 266 lEe~PKw~~L~eiL~eI~~~~~~~~~~~~~~~iLI~~~d~~T~~qL~~~L~~ 317 (814)
T TIGR00596 266 LEENPKWEVLTDVLKEISHEMRMTNRLQGPGKVLIMCSDNRTCLQLRDYLTT 317 (814)
T ss_pred cccCCCHHHHHHHHHHHHhHHhhhcccCCCCcEEEEEcchHHHHHHHHHHHh
Confidence 45899999999999887543 35799999999999999998865
No 151
>KOG0920|consensus
Probab=97.39 E-value=0.00043 Score=56.64 Aligned_cols=111 Identities=16% Similarity=0.201 Sum_probs=81.3
Q ss_pred chHHHHHHHHHHhhhC--CCeEEEEeccHHHHHHHHHHHhhc-------CCeEEEEeCCCChHHHHHHHHHHhcCCCceE
Q psy2046 23 GKLKKLDEILPDLKKN--GHRVLIFSQFIFVLDILGHYMDIR-------GWRHLRLDGATQVSSRQELIDEYNRDQDLFA 93 (138)
Q Consensus 23 ~K~~~l~~ll~~~~~~--~~k~iif~~~~~~~~~l~~~l~~~-------g~~~~~i~g~~~~~~R~~~~~~F~~~~~~~v 93 (138)
-....+.+++..+.+. ...++||-+....+..+.+.|..+ .+-...+|+.++..+...+...-- +..+-
T Consensus 395 id~~Li~~li~~I~~~~~~GaILVFLPG~~eI~~~~~~L~~~~~f~~~~~~~ilplHs~~~s~eQ~~VF~~pp--~g~RK 472 (924)
T KOG0920|consen 395 IDYDLIEDLIEYIDEREFEGAILVFLPGWEEILQLKELLEVNLPFADSLKFAILPLHSSIPSEEQQAVFKRPP--KGTRK 472 (924)
T ss_pred ccHHHHHHHHHhcccCCCCceEEEEcCCHHHHHHHHHHhhhccccccccceEEEeccccCChHHHHHhcCCCC--CCcch
Confidence 4556666677666544 358999999999999988888653 245678999999888877776543 33344
Q ss_pred EEEeccccccccCcCccCEEEE--------eCC---------CC-CccchhHHHHHHhhc
Q psy2046 94 FLLSTKAGGLGINLTAADTVII--------HDV---------DF-NPYNDKQAEDRCHRV 135 (138)
Q Consensus 94 ll~~~~~~~~Gl~l~~~~~vi~--------~~~---------~~-~~~~~~Q~~gR~~R~ 135 (138)
++++|..+..++++.++-+||- ||+ .| +.+.-.||.||+||.
T Consensus 473 IIlaTNIAETSITIdDVvyVIDsG~~Ke~~yD~~~~~s~l~~~wvSkAna~QR~GRAGRv 532 (924)
T KOG0920|consen 473 IILATNIAETSITIDDVVYVIDSGLVKEKSYDPERKVSCLLLSWVSKANAKQRRGRAGRV 532 (924)
T ss_pred hhhhhhhHhhcccccCeEEEEecCeeeeeeecccCCcchhheeeccccchHHhcccccCc
Confidence 7889999999999998888763 343 23 344556999999985
No 152
>KOG0922|consensus
Probab=97.39 E-value=0.0012 Score=51.89 Aligned_cols=74 Identities=16% Similarity=0.147 Sum_probs=57.7
Q ss_pred CCeEEEEeccHHHHHHHHHHHhhc------CC--eEEEEeCCCChHHHHHHHHHHhcCCCceEEEEeccccccccCcCcc
Q psy2046 39 GHRVLIFSQFIFVLDILGHYMDIR------GW--RHLRLDGATQVSSRQELIDEYNRDQDLFAFLLSTKAGGLGINLTAA 110 (138)
Q Consensus 39 ~~k~iif~~~~~~~~~l~~~l~~~------g~--~~~~i~g~~~~~~R~~~~~~F~~~~~~~vll~~~~~~~~Gl~l~~~ 110 (138)
..-++||-.-.+.++...+.|.+. +. -+..+||+++.++..++.+.- ++..+-++++|+++.+.+++++.
T Consensus 258 ~GDILvFLtGqeEIe~~~~~l~e~~~~~~~~~~~~~lply~aL~~e~Q~rvF~p~--p~g~RKvIlsTNIAETSlTI~GI 335 (674)
T KOG0922|consen 258 PGDILVFLTGQEEIEAACELLRERAKSLPEDCPELILPLYGALPSEEQSRVFDPA--PPGKRKVILSTNIAETSLTIDGI 335 (674)
T ss_pred CCCEEEEeCCHHHHHHHHHHHHHHhhhccccCcceeeeecccCCHHHhhccccCC--CCCcceEEEEcceeeeeEEecce
Confidence 347999999999999888888764 11 246799999988887776543 22445588899999999999999
Q ss_pred CEEE
Q psy2046 111 DTVI 114 (138)
Q Consensus 111 ~~vi 114 (138)
.+||
T Consensus 336 ~YVV 339 (674)
T KOG0922|consen 336 RYVV 339 (674)
T ss_pred EEEE
Confidence 8885
No 153
>KOG0948|consensus
Probab=97.38 E-value=0.00026 Score=56.52 Aligned_cols=106 Identities=17% Similarity=0.150 Sum_probs=73.5
Q ss_pred HHHHHHHh-hhCCCeEEEEeccHHHHHHHHHHHhhcCC---------------------------------------eEE
Q psy2046 28 LDEILPDL-KKNGHRVLIFSQFIFVLDILGHYMDIRGW---------------------------------------RHL 67 (138)
Q Consensus 28 l~~ll~~~-~~~~~k~iif~~~~~~~~~l~~~l~~~g~---------------------------------------~~~ 67 (138)
+.++++.+ .++...+||||-+++.++.++-.+.+..+ ...
T Consensus 371 i~kiVkmi~~~~~~PVIvFSFSkkeCE~~Alqm~kldfN~deEk~~V~~iF~nAi~~LseeDr~LPqie~iLPLL~RGIG 450 (1041)
T KOG0948|consen 371 IYKIVKMIMERNYLPVIVFSFSKKECEAYALQMSKLDFNTDEEKELVETIFNNAIDQLSEEDRELPQIENILPLLRRGIG 450 (1041)
T ss_pred HHHHHHHHHhhcCCceEEEEecHhHHHHHHHhhccCcCCChhHHHHHHHHHHHHHHhcChhhccchHHHHHHHHHHhccc
Confidence 34455544 34568999999999888877666654322 233
Q ss_pred EEeCCCChHHHHHHHHHHhcCCCceEEEEeccccccccCcCccCEEEEe-----C---CCC-CccchhHHHHHHhhcC
Q psy2046 68 RLDGATQVSSRQELIDEYNRDQDLFAFLLSTKAGGLGINLTAADTVIIH-----D---VDF-NPYNDKQAEDRCHRVG 136 (138)
Q Consensus 68 ~i~g~~~~~~R~~~~~~F~~~~~~~vll~~~~~~~~Gl~l~~~~~vi~~-----~---~~~-~~~~~~Q~~gR~~R~G 136 (138)
..||++-+--++-+-=-|++| -.+ +|.+|.+.+.|||.| |.+|++. | +-| +...|+|.-||+||-|
T Consensus 451 IHHsGLLPIlKE~IEILFqEG-LvK-vLFATETFsiGLNMP-AkTVvFT~~rKfDG~~fRwissGEYIQMSGRAGRRG 525 (1041)
T KOG0948|consen 451 IHHSGLLPILKEVIEILFQEG-LVK-VLFATETFSIGLNMP-AKTVVFTAVRKFDGKKFRWISSGEYIQMSGRAGRRG 525 (1041)
T ss_pred cccccchHHHHHHHHHHHhcc-HHH-HHHhhhhhhhccCCc-ceeEEEeeccccCCcceeeecccceEEecccccccC
Confidence 667777666565555567666 344 566789999999998 5666653 2 224 6778999999999988
No 154
>PRK11747 dinG ATP-dependent DNA helicase DinG; Provisional
Probab=97.34 E-value=0.0062 Score=49.17 Aligned_cols=91 Identities=19% Similarity=0.314 Sum_probs=62.8
Q ss_pred HHHHHHHHHHhhhCCCeEEEEeccHHHHHHHHHHHhhc-CCeEEEEeCCCChHHHHHHHHHHhc----CCCceEEEEecc
Q psy2046 25 LKKLDEILPDLKKNGHRVLIFSQFIFVLDILGHYMDIR-GWRHLRLDGATQVSSRQELIDEYNR----DQDLFAFLLSTK 99 (138)
Q Consensus 25 ~~~l~~ll~~~~~~~~k~iif~~~~~~~~~l~~~l~~~-g~~~~~i~g~~~~~~R~~~~~~F~~----~~~~~vll~~~~ 99 (138)
...+.+.|..+...+..++||..+...++.+.+.|... +. .+...|. ..|.++++.|++ ++. . +|+.+.
T Consensus 520 ~~~~~~~i~~l~~~~gg~LVlFtSy~~l~~v~~~l~~~~~~-~ll~Q~~---~~~~~ll~~f~~~~~~~~~-~-VL~g~~ 593 (697)
T PRK11747 520 TAEMAEFLPELLEKHKGSLVLFASRRQMQKVADLLPRDLRL-MLLVQGD---QPRQRLLEKHKKRVDEGEG-S-VLFGLQ 593 (697)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHhcCC-cEEEeCC---chHHHHHHHHHHHhccCCC-e-EEEEec
Confidence 44566666665555556777777788888888888643 33 3455664 357889988874 333 3 555668
Q ss_pred ccccccCcCc--cCEEEEeCCCCC
Q psy2046 100 AGGLGINLTA--ADTVIIHDVDFN 121 (138)
Q Consensus 100 ~~~~Gl~l~~--~~~vi~~~~~~~ 121 (138)
+..+|+|+++ .+.||+.-.|+-
T Consensus 594 sf~EGVD~pGd~l~~vII~kLPF~ 617 (697)
T PRK11747 594 SFAEGLDLPGDYLTQVIITKIPFA 617 (697)
T ss_pred cccccccCCCCceEEEEEEcCCCC
Confidence 8999999984 688899887763
No 155
>COG4889 Predicted helicase [General function prediction only]
Probab=97.10 E-value=0.00095 Score=54.53 Aligned_cols=71 Identities=23% Similarity=0.259 Sum_probs=55.9
Q ss_pred eEEEEeCCCChHHHHHHHHHHhc-CCCceEEEEeccccccccCcCccCEEEEeCCCCCccchhHHHHHHhhc
Q psy2046 65 RHLRLDGATQVSSRQELIDEYNR-DQDLFAFLLSTKAGGLGINLTAADTVIIHDVDFNPYNDKQAEDRCHRV 135 (138)
Q Consensus 65 ~~~~i~g~~~~~~R~~~~~~F~~-~~~~~vll~~~~~~~~Gl~l~~~~~vi~~~~~~~~~~~~Q~~gR~~R~ 135 (138)
.+--++|.|+.-+|.+.+.--+. .+...-+|-....+++|+|+|.-+.||+++|--...+..|+.||+-|.
T Consensus 501 Si~HvDGtmNal~R~~l~~l~~~~~~neckIlSNaRcLSEGVDVPaLDsViFf~pr~smVDIVQaVGRVMRK 572 (1518)
T COG4889 501 SIDHVDGTMNALERLDLLELKNTFEPNECKILSNARCLSEGVDVPALDSVIFFDPRSSMVDIVQAVGRVMRK 572 (1518)
T ss_pred EeecccccccHHHHHHHHhccCCCCcchheeeccchhhhcCCCccccceEEEecCchhHHHHHHHHHHHHHh
Confidence 34558899998899665553321 222234787888899999999999999999999999999999999884
No 156
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.02 E-value=0.021 Score=44.49 Aligned_cols=95 Identities=14% Similarity=0.124 Sum_probs=71.1
Q ss_pred ccCchHHHHHHHHHHhhhCCCeEEEEeccHHHHHHHHHHHhhc-CCeEEEEeCCCChHHHHHHHHHHhcCCCceEEEEec
Q psy2046 20 VESGKLKKLDEILPDLKKNGHRVLIFSQFIFVLDILGHYMDIR-GWRHLRLDGATQVSSRQELIDEYNRDQDLFAFLLST 98 (138)
Q Consensus 20 ~~s~K~~~l~~ll~~~~~~~~k~iif~~~~~~~~~l~~~l~~~-g~~~~~i~g~~~~~~R~~~~~~F~~~~~~~vll~~~ 98 (138)
.-|+|......++......+.++++.++.......+.+.|++. |..+..+||+++..+|.+...+-.+++. .+++.+.
T Consensus 6 TGsGKT~v~l~~i~~~l~~g~~vLvlvP~i~L~~Q~~~~l~~~f~~~v~vlhs~~~~~er~~~~~~~~~g~~-~IVVGTr 84 (505)
T TIGR00595 6 TGSGKTEVYLQAIEKVLALGKSVLVLVPEIALTPQMIQRFKYRFGSQVAVLHSGLSDSEKLQAWRKVKNGEI-LVVIGTR 84 (505)
T ss_pred CCCCHHHHHHHHHHHHHHcCCeEEEEeCcHHHHHHHHHHHHHHhCCcEEEEECCCCHHHHHHHHHHHHcCCC-CEEECCh
Confidence 3578999888888877788889999999998888888888654 6788999999999999998888776643 4455443
Q ss_pred cccccccCcCccCEEEEeC
Q psy2046 99 KAGGLGINLTAADTVIIHD 117 (138)
Q Consensus 99 ~~~~~Gl~l~~~~~vi~~~ 117 (138)
.+. =+.+.+...||+-+
T Consensus 85 sal--f~p~~~l~lIIVDE 101 (505)
T TIGR00595 85 SAL--FLPFKNLGLIIVDE 101 (505)
T ss_pred HHH--cCcccCCCEEEEEC
Confidence 332 13455666666644
No 157
>TIGR03117 cas_csf4 CRISPR-associated DEAD/DEAH-box helicase Csf4. Members of this family show up near CRISPR repeats in Acidithiobacillus ferrooxidans ATCC 23270, Azoarcus sp. EbN1, and Rhodoferax ferrireducens DSM 15236. In the latter two species, the CRISPR/cas locus is found on a plasmid. This family is one of several characteristic of a type of CRISPR-associated (cas) gene cluster we designate Aferr after A. ferrooxidans, where it is both chromosomal and the only type of cas gene cluster found. The gene is designated csf4 (CRISPR/cas Subtype as in A. ferrooxidans protein 1), as it lies farthest (fourth closest) from the repeats in the A. ferrooxidans genome.
Probab=97.02 E-value=0.026 Score=45.08 Aligned_cols=95 Identities=11% Similarity=0.152 Sum_probs=61.7
Q ss_pred HHHHHHHHhh--hCCCeEEEEeccHHHHHHHHHHHhhcCCeEEEEeCCCChHHHHHHHHHHhcC----CCceEEEEeccc
Q psy2046 27 KLDEILPDLK--KNGHRVLIFSQFIFVLDILGHYMDIRGWRHLRLDGATQVSSRQELIDEYNRD----QDLFAFLLSTKA 100 (138)
Q Consensus 27 ~l~~ll~~~~--~~~~k~iif~~~~~~~~~l~~~l~~~g~~~~~i~g~~~~~~R~~~~~~F~~~----~~~~vll~~~~~ 100 (138)
.+.+.+..+. ..|.-.+.|+++ ..+..+.+.|+..---.+.+.|..+ .+...+++|+.. +.. +|+.|.+
T Consensus 457 ~~~~~~~~~~~~~~G~~lvLfTS~-~~~~~~~~~l~~~l~~~~l~qg~~~--~~~~l~~~f~~~~~~~~~~--vL~gt~s 531 (636)
T TIGR03117 457 NVSLSTAAILRKAQGGTLVLTTAF-SHISAIGQLVELGIPAEIVIQSEKN--RLASAEQQFLALYANGIQP--VLIAAGG 531 (636)
T ss_pred HHHHHHHHHHHHcCCCEEEEechH-HHHHHHHHHHHhhcCCCEEEeCCCc--cHHHHHHHHHHhhcCCCCc--EEEeCCc
Confidence 3444444433 345567777765 5567777777542112355666443 567799999974 333 7778899
Q ss_pred cccccCc----------CccCEEEEeCCCCCccchh
Q psy2046 101 GGLGINL----------TAADTVIIHDVDFNPYNDK 126 (138)
Q Consensus 101 ~~~Gl~l----------~~~~~vi~~~~~~~~~~~~ 126 (138)
..+|+|+ ...++||+.-.|+-+.+-.
T Consensus 532 fweGvDv~~~~~~p~~G~~Ls~ViI~kLPF~~~dp~ 567 (636)
T TIGR03117 532 AWTGIDLTHKPVSPDKDNLLTDLIITCAPFGLNRSL 567 (636)
T ss_pred cccccccCCccCCCCCCCcccEEEEEeCCCCcCChH
Confidence 9999999 2578889988888765443
No 158
>PRK05580 primosome assembly protein PriA; Validated
Probab=96.98 E-value=0.027 Score=45.50 Aligned_cols=94 Identities=13% Similarity=0.095 Sum_probs=70.7
Q ss_pred cCchHHHHHHHHHHhhhCCCeEEEEeccHHHHHHHHHHHhh-cCCeEEEEeCCCChHHHHHHHHHHhcCCCceEEEEecc
Q psy2046 21 ESGKLKKLDEILPDLKKNGHRVLIFSQFIFVLDILGHYMDI-RGWRHLRLDGATQVSSRQELIDEYNRDQDLFAFLLSTK 99 (138)
Q Consensus 21 ~s~K~~~l~~ll~~~~~~~~k~iif~~~~~~~~~l~~~l~~-~g~~~~~i~g~~~~~~R~~~~~~F~~~~~~~vll~~~~ 99 (138)
-|+|......++......|.+++|.++.......+.+.|++ .|..+..+||+++..+|.+...+...++ ..+++.+..
T Consensus 172 GSGKT~v~l~~i~~~l~~g~~vLvLvPt~~L~~Q~~~~l~~~fg~~v~~~~s~~s~~~r~~~~~~~~~g~-~~IVVgTrs 250 (679)
T PRK05580 172 GSGKTEVYLQAIAEVLAQGKQALVLVPEIALTPQMLARFRARFGAPVAVLHSGLSDGERLDEWRKAKRGE-AKVVIGARS 250 (679)
T ss_pred CChHHHHHHHHHHHHHHcCCeEEEEeCcHHHHHHHHHHHHHHhCCCEEEEECCCCHHHHHHHHHHHHcCC-CCEEEeccH
Confidence 36888888888877777788999999999988888888876 3788999999999999998888887764 344554433
Q ss_pred ccccccCcCccCEEEEeC
Q psy2046 100 AGGLGINLTAADTVIIHD 117 (138)
Q Consensus 100 ~~~~Gl~l~~~~~vi~~~ 117 (138)
+. =+.+.+...+|+-+
T Consensus 251 al--~~p~~~l~liVvDE 266 (679)
T PRK05580 251 AL--FLPFKNLGLIIVDE 266 (679)
T ss_pred Hh--cccccCCCEEEEEC
Confidence 22 24455666666654
No 159
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=96.93 E-value=0.019 Score=46.35 Aligned_cols=97 Identities=13% Similarity=0.098 Sum_probs=70.2
Q ss_pred cCchHHHHHHHHHHhhhCCCeEEEEeccHHHHHHHHH----HHhhcCCeEEEEeCCCChHHHHHHHHHHhcCCCceEEEE
Q psy2046 21 ESGKLKKLDEILPDLKKNGHRVLIFSQFIFVLDILGH----YMDIRGWRHLRLDGATQVSSRQELIDEYNRDQDLFAFLL 96 (138)
Q Consensus 21 ~s~K~~~l~~ll~~~~~~~~k~iif~~~~~~~~~l~~----~l~~~g~~~~~i~g~~~~~~R~~~~~~F~~~~~~~vll~ 96 (138)
-|+|.....-.+.....++.++++-+++..-+....+ .+...|+++..++|+++..+|.+.++...+++ +.+++.
T Consensus 292 GSGKT~va~~~il~~~~~g~q~lilaPT~~LA~Q~~~~l~~l~~~~~i~v~ll~G~~~~~~r~~~~~~l~~g~-~~IvVg 370 (681)
T PRK10917 292 GSGKTVVAALAALAAIEAGYQAALMAPTEILAEQHYENLKKLLEPLGIRVALLTGSLKGKERREILEAIASGE-ADIVIG 370 (681)
T ss_pred CCcHHHHHHHHHHHHHHcCCeEEEEeccHHHHHHHHHHHHHHHhhcCcEEEEEcCCCCHHHHHHHHHHHhCCC-CCEEEc
Confidence 4678776554444445678899999999877665444 44445789999999999999999999998774 445666
Q ss_pred eccccccccCcCccCEEEEeCC
Q psy2046 97 STKAGGLGINLTAADTVIIHDV 118 (138)
Q Consensus 97 ~~~~~~~Gl~l~~~~~vi~~~~ 118 (138)
+.......+.+.+...||+=+.
T Consensus 371 T~~ll~~~v~~~~l~lvVIDE~ 392 (681)
T PRK10917 371 THALIQDDVEFHNLGLVIIDEQ 392 (681)
T ss_pred hHHHhcccchhcccceEEEech
Confidence 6555666677777777776433
No 160
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=96.93 E-value=0.0043 Score=50.07 Aligned_cols=83 Identities=19% Similarity=0.275 Sum_probs=62.2
Q ss_pred HHHHHHHHhhc--CCeEEEEeCCCChHH--HHHHHHHHhcCCCceEEEEeccccccccCcCccCEEEEe--CCCCCccch
Q psy2046 52 LDILGHYMDIR--GWRHLRLDGATQVSS--RQELIDEYNRDQDLFAFLLSTKAGGLGINLTAADTVIIH--DVDFNPYND 125 (138)
Q Consensus 52 ~~~l~~~l~~~--g~~~~~i~g~~~~~~--R~~~~~~F~~~~~~~vll~~~~~~~~Gl~l~~~~~vi~~--~~~~~~~~~ 125 (138)
.+.+++.|++. +.++..++++++... -+..++.|.+++.. +|+-|.....|.|+++..-|..+ |...+..+|
T Consensus 493 terieeeL~~~FP~~rv~r~d~Dtt~~k~~~~~~l~~~~~ge~d--ILiGTQmiaKG~~fp~vtLVgvl~aD~~L~~~Df 570 (730)
T COG1198 493 TERIEEELKRLFPGARIIRIDSDTTRRKGALEDLLDQFANGEAD--ILIGTQMIAKGHDFPNVTLVGVLDADTGLGSPDF 570 (730)
T ss_pred HHHHHHHHHHHCCCCcEEEEccccccchhhHHHHHHHHhCCCCC--eeecchhhhcCCCcccceEEEEEechhhhcCCCc
Confidence 45566666654 667889999876533 45689999999876 88889999999999999998665 444444443
Q ss_pred ----------hHHHHHHhhcC
Q psy2046 126 ----------KQAEDRCHRVG 136 (138)
Q Consensus 126 ----------~Q~~gR~~R~G 136 (138)
.|..||++|-+
T Consensus 571 RA~Er~fqll~QvaGRAgR~~ 591 (730)
T COG1198 571 RASERTFQLLMQVAGRAGRAG 591 (730)
T ss_pred chHHHHHHHHHHHHhhhccCC
Confidence 49999999963
No 161
>PRK14873 primosome assembly protein PriA; Provisional
Probab=96.86 E-value=0.017 Score=46.43 Aligned_cols=76 Identities=13% Similarity=-0.002 Sum_probs=65.0
Q ss_pred cCchHHHHHHHHHHhhhCCCeEEEEeccHHHHHHHHHHHhhc-C-CeEEEEeCCCChHHHHHHHHHHhcCCCceEEEEe
Q psy2046 21 ESGKLKKLDEILPDLKKNGHRVLIFSQFIFVLDILGHYMDIR-G-WRHLRLDGATQVSSRQELIDEYNRDQDLFAFLLS 97 (138)
Q Consensus 21 ~s~K~~~l~~ll~~~~~~~~k~iif~~~~~~~~~l~~~l~~~-g-~~~~~i~g~~~~~~R~~~~~~F~~~~~~~vll~~ 97 (138)
-|+|....++++......|.++||.++.+.....+.+.|+.. | ..++.+|++++..+|.+...+..+|+. +|++.+
T Consensus 170 GSGKTevyl~~i~~~l~~Gk~vLvLvPEi~lt~q~~~rl~~~f~~~~v~~lhS~l~~~~R~~~w~~~~~G~~-~IViGt 247 (665)
T PRK14873 170 GEDWARRLAAAAAATLRAGRGALVVVPDQRDVDRLEAALRALLGAGDVAVLSAGLGPADRYRRWLAVLRGQA-RVVVGT 247 (665)
T ss_pred CCcHHHHHHHHHHHHHHcCCeEEEEecchhhHHHHHHHHHHHcCCCcEEEECCCCCHHHHHHHHHHHhCCCC-cEEEEc
Confidence 468999999999999899999999999999999888888765 3 568999999999999999999988754 455544
No 162
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=96.83 E-value=0.0063 Score=49.12 Aligned_cols=80 Identities=19% Similarity=0.173 Sum_probs=68.0
Q ss_pred cccCchHHHHHHHHHHhhhCCCeEEEEeccHHHHHHHHHHHhhc-CCeEEEEeCCCChHHHHHHHHHHhcCCCceEEEEe
Q psy2046 19 VVESGKLKKLDEILPDLKKNGHRVLIFSQFIFVLDILGHYMDIR-GWRHLRLDGATQVSSRQELIDEYNRDQDLFAFLLS 97 (138)
Q Consensus 19 ~~~s~K~~~l~~ll~~~~~~~~k~iif~~~~~~~~~l~~~l~~~-g~~~~~i~g~~~~~~R~~~~~~F~~~~~~~vll~~ 97 (138)
+.-|+|.+...+++.+....|+.+||-++.+.....+.+.|+.. |.++..+|+++++.+|.+...+..+|+ .++++.+
T Consensus 225 vTGSGKTEvYl~~i~~~L~~GkqvLvLVPEI~Ltpq~~~rf~~rFg~~v~vlHS~Ls~~er~~~W~~~~~G~-~~vVIGt 303 (730)
T COG1198 225 VTGSGKTEVYLEAIAKVLAQGKQVLVLVPEIALTPQLLARFKARFGAKVAVLHSGLSPGERYRVWRRARRGE-ARVVIGT 303 (730)
T ss_pred CCCCcHHHHHHHHHHHHHHcCCEEEEEeccccchHHHHHHHHHHhCCChhhhcccCChHHHHHHHHHHhcCC-ceEEEEe
Confidence 34589999999999999999999999999998888887777654 788999999999999999999999885 4556654
Q ss_pred cc
Q psy2046 98 TK 99 (138)
Q Consensus 98 ~~ 99 (138)
-.
T Consensus 304 RS 305 (730)
T COG1198 304 RS 305 (730)
T ss_pred ch
Confidence 33
No 163
>PF02399 Herpes_ori_bp: Origin of replication binding protein; InterPro: IPR003450 This entry represents replication origin binding protein. It functions as a docking protein to recruit essential components of the viral replication machinery to viral DNA origins. In the presence of the major DNA-binding protein, it opens dsDNA which leads to a conformational change in the origin that facilitates DNA unwinding and subsequent replication [].; GO: 0003688 DNA replication origin binding, 0005524 ATP binding, 0006260 DNA replication
Probab=96.56 E-value=0.043 Score=44.74 Aligned_cols=103 Identities=14% Similarity=0.212 Sum_probs=70.3
Q ss_pred HHHHHHHHHHhhhCCCeEEEEeccHHHHHHHHHHHhhcCCeEEEEeCCCChHHHHHHHHHHhcCCCceEEEEeccccccc
Q psy2046 25 LKKLDEILPDLKKNGHRVLIFSQFIFVLDILGHYMDIRGWRHLRLDGATQVSSRQELIDEYNRDQDLFAFLLSTKAGGLG 104 (138)
Q Consensus 25 ~~~l~~ll~~~~~~~~k~iif~~~~~~~~~l~~~l~~~g~~~~~i~g~~~~~~R~~~~~~F~~~~~~~vll~~~~~~~~G 104 (138)
......++.+ ...|+++-||+.+....+.+++.....+.++..++|..+.. -++.+. ..+ +++-|.+...|
T Consensus 269 ~tF~~~L~~~-L~~gknIcvfsSt~~~~~~v~~~~~~~~~~Vl~l~s~~~~~----dv~~W~---~~~-VviYT~~itvG 339 (824)
T PF02399_consen 269 TTFFSELLAR-LNAGKNICVFSSTVSFAEIVARFCARFTKKVLVLNSTDKLE----DVESWK---KYD-VVIYTPVITVG 339 (824)
T ss_pred hhHHHHHHHH-HhCCCcEEEEeChHHHHHHHHHHHHhcCCeEEEEcCCCCcc----cccccc---cee-EEEEeceEEEE
Confidence 3334444444 56789999999999999999999998888888888866644 234442 333 66677788888
Q ss_pred cCcC--ccCEEEEe-CC-CCCccc--hhHHHHHHhhcC
Q psy2046 105 INLT--AADTVIIH-DV-DFNPYN--DKQAEDRCHRVG 136 (138)
Q Consensus 105 l~l~--~~~~vi~~-~~-~~~~~~--~~Q~~gR~~R~G 136 (138)
+++- ..+.|+.| .+ ...|.. ..|.+||+-.++
T Consensus 340 ~Sf~~~HF~~~f~yvk~~~~gpd~~s~~Q~lgRvR~l~ 377 (824)
T PF02399_consen 340 LSFEEKHFDSMFAYVKPMSYGPDMVSVYQMLGRVRSLL 377 (824)
T ss_pred eccchhhceEEEEEecCCCCCCcHHHHHHHHHHHHhhc
Confidence 8875 23445444 22 233443 479999997765
No 164
>KOG1513|consensus
Probab=96.55 E-value=0.0014 Score=52.91 Aligned_cols=54 Identities=22% Similarity=0.344 Sum_probs=43.0
Q ss_pred HHHHhcCCCceEEEEeccccccccCcCccCEE--------EEeCCCCCccchhHHHHHHhhcCC
Q psy2046 82 IDEYNRDQDLFAFLLSTKAGGLGINLTAADTV--------IIHDVDFNPYNDKQAEDRCHRVGQ 137 (138)
Q Consensus 82 ~~~F~~~~~~~vll~~~~~~~~Gl~l~~~~~v--------i~~~~~~~~~~~~Q~~gR~~R~GQ 137 (138)
-++|.+|+.. |-++ +.+++.|+.|+.-..| |-++.||+...-+|..||.||-.|
T Consensus 850 KqrFM~GeK~-vAII-SEAaSSGiSLQsDrRv~NqRRRvHiTLELPWSADrAIQQFGRTHRSNQ 911 (1300)
T KOG1513|consen 850 KQRFMDGEKL-VAII-SEAASSGISLQSDRRVQNQRRRVHITLELPWSADRAIQQFGRTHRSNQ 911 (1300)
T ss_pred Hhhhccccce-eeee-ehhhccCceeecchhhhhhhheEEEEEECCcchhHHHHHhcccccccc
Confidence 3678888764 3343 5889999999966554 557999999999999999999887
No 165
>KOG0924|consensus
Probab=96.53 E-value=0.0038 Score=49.79 Aligned_cols=95 Identities=14% Similarity=0.169 Sum_probs=65.4
Q ss_pred CeEEEEeccHHHHH----HHHHHHhhc------CCeEEEEeCCCChHHHHHHHHHHhcCCCceEEEEeccccccccCcCc
Q psy2046 40 HRVLIFSQFIFVLD----ILGHYMDIR------GWRHLRLDGATQVSSRQELIDEYNRDQDLFAFLLSTKAGGLGINLTA 109 (138)
Q Consensus 40 ~k~iif~~~~~~~~----~l~~~l~~~------g~~~~~i~g~~~~~~R~~~~~~F~~~~~~~vll~~~~~~~~Gl~l~~ 109 (138)
.-++||..-.+.++ .|.+.|... ++.+..|++.++.+-..+++..- .+..+-++++|.++.+.|++++
T Consensus 564 GdilIfmtGqediE~t~~~i~~~l~ql~~~~~~~L~vlpiYSQLp~dlQ~kiFq~a--~~~vRK~IvATNIAETSLTi~g 641 (1042)
T KOG0924|consen 564 GDILIFMTGQEDIECTCDIIKEKLEQLDSAPTTDLAVLPIYSQLPADLQAKIFQKA--EGGVRKCIVATNIAETSLTIPG 641 (1042)
T ss_pred CCEEEecCCCcchhHHHHHHHHHHHhhhcCCCCceEEEeehhhCchhhhhhhcccC--CCCceeEEEeccchhhceeecc
Confidence 46889987665544 444444432 56789999999988777776643 3345558889999999999999
Q ss_pred cCEEEEeCC------------------CCCccchhHHHHHHhhcC
Q psy2046 110 ADTVIIHDV------------------DFNPYNDKQAEDRCHRVG 136 (138)
Q Consensus 110 ~~~vi~~~~------------------~~~~~~~~Q~~gR~~R~G 136 (138)
+.+||=... |-+.+.-.||.||+||-|
T Consensus 642 I~yVID~Gy~K~kvyn~~~G~D~L~~~pIS~AnA~QRaGRAGRt~ 686 (1042)
T KOG0924|consen 642 IRYVIDTGYCKLKVYNPRIGMDALQIVPISQANADQRAGRAGRTG 686 (1042)
T ss_pred eEEEEecCceeeeecccccccceeEEEechhccchhhccccCCCC
Confidence 999874321 122233348888888865
No 166
>TIGR00643 recG ATP-dependent DNA helicase RecG.
Probab=96.48 E-value=0.058 Score=43.18 Aligned_cols=98 Identities=16% Similarity=0.132 Sum_probs=69.8
Q ss_pred ccCchHHHHHHHHHHhhhCCCeEEEEeccHHHHHHHHHHH----hhcCCeEEEEeCCCChHHHHHHHHHHhcCCCceEEE
Q psy2046 20 VESGKLKKLDEILPDLKKNGHRVLIFSQFIFVLDILGHYM----DIRGWRHLRLDGATQVSSRQELIDEYNRDQDLFAFL 95 (138)
Q Consensus 20 ~~s~K~~~l~~ll~~~~~~~~k~iif~~~~~~~~~l~~~l----~~~g~~~~~i~g~~~~~~R~~~~~~F~~~~~~~vll 95 (138)
.-|+|.....-.+.....++.++++-+++..-+..+.+.+ ...|+++..++|+++..+|...++...+++ ..+++
T Consensus 265 TGSGKT~va~l~il~~~~~g~qvlilaPT~~LA~Q~~~~~~~l~~~~gi~v~lltg~~~~~~r~~~~~~i~~g~-~~IiV 343 (630)
T TIGR00643 265 VGSGKTLVAALAMLAAIEAGYQVALMAPTEILAEQHYNSLRNLLAPLGIEVALLTGSLKGKRRKELLETIASGQ-IHLVV 343 (630)
T ss_pred CCCcHHHHHHHHHHHHHHcCCcEEEECCHHHHHHHHHHHHHHHhcccCcEEEEEecCCCHHHHHHHHHHHhCCC-CCEEE
Confidence 3467876554444444566889999999887766554444 445899999999999999999999988774 45566
Q ss_pred EeccccccccCcCccCEEEEeCC
Q psy2046 96 LSTKAGGLGINLTAADTVIIHDV 118 (138)
Q Consensus 96 ~~~~~~~~Gl~l~~~~~vi~~~~ 118 (138)
.+.......+.+.+...||+=+.
T Consensus 344 gT~~ll~~~~~~~~l~lvVIDEa 366 (630)
T TIGR00643 344 GTHALIQEKVEFKRLALVIIDEQ 366 (630)
T ss_pred ecHHHHhccccccccceEEEech
Confidence 66666666677777777776443
No 167
>KOG0926|consensus
Probab=96.45 E-value=0.0021 Score=52.05 Aligned_cols=69 Identities=16% Similarity=0.196 Sum_probs=50.9
Q ss_pred EEEEeCCCChHHHHHHHHHHhcCCCceEEEEeccccccccCcCccCEEEEeCC-----------------CC-CccchhH
Q psy2046 66 HLRLDGATQVSSRQELIDEYNRDQDLFAFLLSTKAGGLGINLTAADTVIIHDV-----------------DF-NPYNDKQ 127 (138)
Q Consensus 66 ~~~i~g~~~~~~R~~~~~~F~~~~~~~vll~~~~~~~~Gl~l~~~~~vi~~~~-----------------~~-~~~~~~Q 127 (138)
+..+++-++..+..++++.- ....+.++++|.++.+.|++|++.+||=... .| +.+.--|
T Consensus 607 vLPLYSLLs~~~Q~RVF~~~--p~g~RLcVVaTNVAETSLTIPgIkYVVD~Gr~K~R~Yd~~TGV~~FeV~wiSkASadQ 684 (1172)
T KOG0926|consen 607 VLPLYSLLSTEKQMRVFDEV--PKGERLCVVATNVAETSLTIPGIKYVVDCGRVKERLYDSKTGVSSFEVDWISKASADQ 684 (1172)
T ss_pred EeehhhhcCHHHhhhhccCC--CCCceEEEEeccchhcccccCCeeEEEeccchhhhccccccCceeEEEEeeeccccch
Confidence 55677777777777776654 3345778999999999999999999974321 23 3334449
Q ss_pred HHHHHhhcC
Q psy2046 128 AEDRCHRVG 136 (138)
Q Consensus 128 ~~gR~~R~G 136 (138)
|.||+||.|
T Consensus 685 RAGRAGRtg 693 (1172)
T KOG0926|consen 685 RAGRAGRTG 693 (1172)
T ss_pred hccccCCCC
Confidence 999999988
No 168
>smart00492 HELICc3 helicase superfamily c-terminal domain.
Probab=96.42 E-value=0.058 Score=34.88 Aligned_cols=52 Identities=25% Similarity=0.402 Sum_probs=36.0
Q ss_pred EEEeCCCChHHHHHHHHHHhcCCCceEEEEeccccccccCcCc--cCEEEEeCCCC
Q psy2046 67 LRLDGATQVSSRQELIDEYNRDQDLFAFLLSTKAGGLGINLTA--ADTVIIHDVDF 120 (138)
Q Consensus 67 ~~i~g~~~~~~R~~~~~~F~~~~~~~vll~~~~~~~~Gl~l~~--~~~vi~~~~~~ 120 (138)
..+-+ .+..+...++++|+..... .+|+++....+|+|+++ +..||+...|+
T Consensus 26 i~~e~-~~~~~~~~~l~~f~~~~~~-~iL~~~~~~~EGiD~~g~~~r~vii~glPf 79 (141)
T smart00492 26 LLVQG-EDGKETGKLLEKYVEACEN-AILLATARFSEGVDFPGDYLRAVIIDGLPF 79 (141)
T ss_pred EEEeC-CChhHHHHHHHHHHHcCCC-EEEEEccceecceecCCCCeeEEEEEecCC
Confidence 33434 3344678999999865432 35666666999999984 46788887775
No 169
>COG4581 Superfamily II RNA helicase [DNA replication, recombination, and repair]
Probab=96.31 E-value=0.0082 Score=50.04 Aligned_cols=69 Identities=17% Similarity=0.228 Sum_probs=55.6
Q ss_pred EEEeCCCChHHHHHHHHHHhcCCCceEEEEeccccccccCcCccCEEEEeCC---------CCCccchhHHHHHHhhcCC
Q psy2046 67 LRLDGATQVSSRQELIDEYNRDQDLFAFLLSTKAGGLGINLTAADTVIIHDV---------DFNPYNDKQAEDRCHRVGQ 137 (138)
Q Consensus 67 ~~i~g~~~~~~R~~~~~~F~~~~~~~vll~~~~~~~~Gl~l~~~~~vi~~~~---------~~~~~~~~Q~~gR~~R~GQ 137 (138)
...|+++=+..|+.+-.-|..|- .+ ++..|.+.+.|+|.| |.+|++... +.++..|.|.-||++|-|+
T Consensus 448 avHH~GlLP~~K~~vE~Lfq~GL-vk-vvFaTeT~s~GiNmP-artvv~~~l~K~dG~~~r~L~~gEy~QmsGRAGRRGl 524 (1041)
T COG4581 448 AVHHAGLLPAIKELVEELFQEGL-VK-VVFATETFAIGINMP-ARTVVFTSLSKFDGNGHRWLSPGEYTQMSGRAGRRGL 524 (1041)
T ss_pred hhhccccchHHHHHHHHHHhccc-ee-EEeehhhhhhhcCCc-ccceeeeeeEEecCCceeecChhHHHHhhhhhccccc
Confidence 37899999999999999998873 44 666789999999998 566655422 3478899999999999997
Q ss_pred C
Q psy2046 138 T 138 (138)
Q Consensus 138 t 138 (138)
.
T Consensus 525 D 525 (1041)
T COG4581 525 D 525 (1041)
T ss_pred c
Confidence 3
No 170
>TIGR00580 mfd transcription-repair coupling factor (mfd). All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families.
Probab=95.87 E-value=0.18 Score=42.29 Aligned_cols=96 Identities=10% Similarity=0.034 Sum_probs=71.4
Q ss_pred cCchHHHHHHHHHHhhhCCCeEEEEeccHHHHHHHHHHHhh----cCCeEEEEeCCCChHHHHHHHHHHhcCCCceEEEE
Q psy2046 21 ESGKLKKLDEILPDLKKNGHRVLIFSQFIFVLDILGHYMDI----RGWRHLRLDGATQVSSRQELIDEYNRDQDLFAFLL 96 (138)
Q Consensus 21 ~s~K~~~l~~ll~~~~~~~~k~iif~~~~~~~~~l~~~l~~----~g~~~~~i~g~~~~~~R~~~~~~F~~~~~~~vll~ 96 (138)
-++|.......+.....++.+++|.+++..-+....+.+++ .++++..++|..+..++.+.++..+.+ .+.+++.
T Consensus 482 GsGKT~val~a~l~al~~g~qvlvLvPT~~LA~Q~~~~f~~~~~~~~i~v~~Lsg~~~~~e~~~~~~~l~~g-~~dIVIG 560 (926)
T TIGR00580 482 GFGKTEVAMRAAFKAVLDGKQVAVLVPTTLLAQQHFETFKERFANFPVTIELLSRFRSAKEQNEILKELASG-KIDILIG 560 (926)
T ss_pred CccHHHHHHHHHHHHHHhCCeEEEEeCcHHHHHHHHHHHHHHhccCCcEEEEEeccccHHHHHHHHHHHHcC-CceEEEc
Confidence 46787766655444445678999999999887776666554 467788899999999999999999877 3456777
Q ss_pred eccccccccCcCccCEEEEeC
Q psy2046 97 STKAGGLGINLTAADTVIIHD 117 (138)
Q Consensus 97 ~~~~~~~Gl~l~~~~~vi~~~ 117 (138)
+.......+.+.+...+|+=+
T Consensus 561 Tp~ll~~~v~f~~L~llVIDE 581 (926)
T TIGR00580 561 THKLLQKDVKFKDLGLLIIDE 581 (926)
T ss_pred hHHHhhCCCCcccCCEEEeec
Confidence 776666677787887777743
No 171
>smart00491 HELICc2 helicase superfamily c-terminal domain.
Probab=95.82 E-value=0.11 Score=33.68 Aligned_cols=53 Identities=25% Similarity=0.426 Sum_probs=34.1
Q ss_pred EEEeCCCChHHHHHHHHHHhcCCC-ceEEEEeccc--cccccCcCc--cCEEEEeCCCC
Q psy2046 67 LRLDGATQVSSRQELIDEYNRDQD-LFAFLLSTKA--GGLGINLTA--ADTVIIHDVDF 120 (138)
Q Consensus 67 ~~i~g~~~~~~R~~~~~~F~~~~~-~~vll~~~~~--~~~Gl~l~~--~~~vi~~~~~~ 120 (138)
..+-+.. ..+..+++++|+.... ...+|+++.. .++|+|+++ +..||+...|+
T Consensus 23 i~~e~~~-~~~~~~~l~~f~~~~~~~g~iL~~v~~G~~~EGiD~~g~~~r~vii~glPf 80 (142)
T smart00491 23 VFIEGKD-SGETEELLEKYSAACEARGALLLAVARGKVSEGIDFPDDLGRAVIIVGIPF 80 (142)
T ss_pred EEEECCC-CchHHHHHHHHHHhcCCCCEEEEEEeCCeeecceecCCCccEEEEEEecCC
Confidence 3444433 2355789999986432 0124555444 789999985 57888888775
No 172
>PRK10689 transcription-repair coupling factor; Provisional
Probab=95.28 E-value=0.39 Score=41.24 Aligned_cols=95 Identities=9% Similarity=-0.008 Sum_probs=68.3
Q ss_pred cCchHHHHHHHHHHhhhCCCeEEEEeccHHHHHHHHHHHhh----cCCeEEEEeCCCChHHHHHHHHHHhcCCCceEEEE
Q psy2046 21 ESGKLKKLDEILPDLKKNGHRVLIFSQFIFVLDILGHYMDI----RGWRHLRLDGATQVSSRQELIDEYNRDQDLFAFLL 96 (138)
Q Consensus 21 ~s~K~~~l~~ll~~~~~~~~k~iif~~~~~~~~~l~~~l~~----~g~~~~~i~g~~~~~~R~~~~~~F~~~~~~~vll~ 96 (138)
-++|..............+.+++|-+++..-+..+...+.+ .++.+..++|..+..++.++++..+++ .+.+++.
T Consensus 631 GsGKT~val~aa~~~~~~g~qvlvLvPT~eLA~Q~~~~f~~~~~~~~v~i~~l~g~~s~~e~~~il~~l~~g-~~dIVVg 709 (1147)
T PRK10689 631 GFGKTEVAMRAAFLAVENHKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMLSRFRSAKEQTQILAEAAEG-KIDILIG 709 (1147)
T ss_pred CcCHHHHHHHHHHHHHHcCCeEEEEeCcHHHHHHHHHHHHHhhccCCceEEEEECCCCHHHHHHHHHHHHhC-CCCEEEE
Confidence 46788755544433345688999999999887766665554 356778899999999999999988766 3456777
Q ss_pred eccccccccCcCccCEEEEe
Q psy2046 97 STKAGGLGINLTAADTVIIH 116 (138)
Q Consensus 97 ~~~~~~~Gl~l~~~~~vi~~ 116 (138)
++......+.+.....+|+=
T Consensus 710 Tp~lL~~~v~~~~L~lLVID 729 (1147)
T PRK10689 710 THKLLQSDVKWKDLGLLIVD 729 (1147)
T ss_pred CHHHHhCCCCHhhCCEEEEe
Confidence 76666666667777777763
No 173
>KOG1133|consensus
Probab=94.40 E-value=1.5 Score=35.59 Aligned_cols=95 Identities=16% Similarity=0.228 Sum_probs=57.4
Q ss_pred hHHHHHHHHHHhhhC-CCeEEEEeccHHHHHHHHHHHhhcCCe-------EEEEeCCCChHHHHHHHHHHhcC--CCceE
Q psy2046 24 KLKKLDEILPDLKKN-GHRVLIFSQFIFVLDILGHYMDIRGWR-------HLRLDGATQVSSRQELIDEYNRD--QDLFA 93 (138)
Q Consensus 24 K~~~l~~ll~~~~~~-~~k~iif~~~~~~~~~l~~~l~~~g~~-------~~~i~g~~~~~~R~~~~~~F~~~--~~~~v 93 (138)
-++.|-..+..+... ..-+|+|.++-+.+..+.+..+..|+- .+.+-...+ -+.+++.|... ...-.
T Consensus 613 ~l~~l~~~~~nL~~~VPgGvV~FfPSy~yL~~v~k~w~~~gil~ri~~kK~vF~E~k~~---~~dvl~~Ya~a~~~g~Ga 689 (821)
T KOG1133|consen 613 MIKDLGSSISNLSNAVPGGVVCFFPSYAYLGQVRKRWEQNGILARIVGKKKVFYEPKDT---VEDVLEGYAEAAERGRGA 689 (821)
T ss_pred HHHHHHHHHHHHHhhCCCcEEEEeccHHHHHHHHHHHHhcchHHHhhccchhhccCccc---HHHHHHHHHHHhhcCCCe
Confidence 344555555554332 357999999999999999888876542 222222222 56678888732 11113
Q ss_pred EEEec--cccccccCcC--ccCEEEEeCCCCC
Q psy2046 94 FLLST--KAGGLGINLT--AADTVIIHDVDFN 121 (138)
Q Consensus 94 ll~~~--~~~~~Gl~l~--~~~~vi~~~~~~~ 121 (138)
+|.+. .-.++|+|+. -+..||.+..|+-
T Consensus 690 iLlaVVGGKlSEGINF~D~LgRaVvvVGlPyP 721 (821)
T KOG1133|consen 690 ILLAVVGGKLSEGINFSDDLGRAVVVVGLPYP 721 (821)
T ss_pred EEEEEeccccccccccccccccEEEEeecCCC
Confidence 44442 2245999997 4667888888763
No 174
>TIGR02562 cas3_yersinia CRISPR-associated helicase Cas3. The helicase in many CRISPR-associated (cas) gene clusters is designated Cas3, and most Cas3 proteins are described by model TIGR01587. Members of this family are considerably larger, show a number of motifs in common with TIGR01587 sequences, and replace Cas3 in some CRISPR/cas loci in a number of Proteobacteria, including Yersinia pestis, Chromobacterium violaceum, Erwinia carotovora subsp. atroseptica SCRI1043, Photorhabdus luminescens subsp. laumondii TTO1, Legionella pneumophila, etc.
Probab=93.83 E-value=0.42 Score=40.51 Aligned_cols=91 Identities=14% Similarity=0.054 Sum_probs=56.3
Q ss_pred EEEeccHHHHHHHHHHHhhc------CCeEEEEeCCCChHHHHHHHHH---H------------------hcC---CCce
Q psy2046 43 LIFSQFIFVLDILGHYMDIR------GWRHLRLDGATQVSSRQELIDE---Y------------------NRD---QDLF 92 (138)
Q Consensus 43 iif~~~~~~~~~l~~~l~~~------g~~~~~i~g~~~~~~R~~~~~~---F------------------~~~---~~~~ 92 (138)
|.++ .+..+-.++..|-.. .+.+.+||+.-+...|..+-+. + -.. ....
T Consensus 761 iR~a-nI~p~V~~A~~L~~~~~~~~~~i~~~~yHSr~~l~~Rs~~E~~Ld~~L~R~~~~~~~~~~~i~~~l~~~~~~~~~ 839 (1110)
T TIGR02562 761 IRVA-NIDPLIRLAQFLYALLAEEKYQIHLCCYHAQDPLLLRSYIERRLDQLLTRHKPEQLFQDDEIIDLMQNSPALNHL 839 (1110)
T ss_pred EEEc-CchHHHHHHHHHHhhccccCCceeEEEecccChHHHHHHHHHHHHHHhcccChhhhhchHHHHHHHhcccccCCC
Confidence 4444 455555555555432 3458889998766555442221 1 111 1234
Q ss_pred EEEEeccccccccCcCccCEEEEeCCCCCccchhHHHHHHhhcCC
Q psy2046 93 AFLLSTKAGGLGINLTAADTVIIHDVDFNPYNDKQAEDRCHRVGQ 137 (138)
Q Consensus 93 vll~~~~~~~~Gl~l~~~~~vi~~~~~~~~~~~~Q~~gR~~R~GQ 137 (138)
.++++|.+...|+|+. .+.+|- ++. .....+|+.||+.|-|+
T Consensus 840 ~i~v~Tqv~E~g~D~d-fd~~~~-~~~-~~~sliQ~aGR~~R~~~ 881 (1110)
T TIGR02562 840 FIVLATPVEEVGRDHD-YDWAIA-DPS-SMRSIIQLAGRVNRHRL 881 (1110)
T ss_pred eEEEEeeeEEEEeccc-CCeeee-ccC-cHHHHHHHhhccccccc
Confidence 6888999999999974 555544 332 35568899999999886
No 175
>PF10593 Z1: Z1 domain; InterPro: IPR018310 This entry represents the Z1 domain of unknown function that is found in a group of putative endonucleases. This domain is found associated with a helicase domain of superfamily type II [].
Probab=93.25 E-value=0.33 Score=34.26 Aligned_cols=82 Identities=11% Similarity=0.023 Sum_probs=56.2
Q ss_pred EEeccHHHHHHHHHHHhhcCCeEEEEeCCCChHHHHHHHHHHhcCCC--ceEEEEeccccccccCcCccCEEEEeCCCCC
Q psy2046 44 IFSQFIFVLDILGHYMDIRGWRHLRLDGATQVSSRQELIDEYNRDQD--LFAFLLSTKAGGLGINLTAADTVIIHDVDFN 121 (138)
Q Consensus 44 if~~~~~~~~~l~~~l~~~g~~~~~i~g~~~~~~R~~~~~~F~~~~~--~~vll~~~~~~~~Gl~l~~~~~vi~~~~~~~ 121 (138)
..-++.+..+.|...+.. ++.+..++++.+... -.|.+++. ..++++.-..+++|+++.+-...++.-.+-+
T Consensus 92 ~~~s~~ei~~~l~~~~~~-~~~v~~vNS~~~~~~-----ldy~~~~~~~~~~I~VGGn~LsRGlTleGL~vsYf~R~s~~ 165 (239)
T PF10593_consen 92 DPPSWEEIKPELPKAISD-GIEVVVVNSGSSDDS-----LDYDDGENLGLNVIAVGGNKLSRGLTLEGLTVSYFLRNSKQ 165 (239)
T ss_pred CCcCHHHHHHHHHHHHhc-CceEEEEeCCCcccc-----ccccccccCCceEEEECCccccCceeECCcEEEEecCCCch
Confidence 334455666777777766 799999998765433 44554432 3668888899999999998877777766655
Q ss_pred ccchhHHHHHH
Q psy2046 122 PYNDKQAEDRC 132 (138)
Q Consensus 122 ~~~~~Q~~gR~ 132 (138)
..++.| .||-
T Consensus 166 ~DTL~Q-mgRw 175 (239)
T PF10593_consen 166 YDTLMQ-MGRW 175 (239)
T ss_pred HHHHHH-Hhhc
Confidence 555544 5553
No 176
>TIGR00365 monothiol glutaredoxin, Grx4 family. The gene for the member of this glutaredoxin family in E. coli, originally designated ydhD, is now designated grxD. Its protein, Grx4, is a monothiol glutaredoxin similar to Grx5 of yeast, which is involved in iron-sulfur cluster formation.
Probab=93.24 E-value=1.1 Score=26.93 Aligned_cols=47 Identities=9% Similarity=-0.014 Sum_probs=34.3
Q ss_pred CCeEEEEec------cHHHHHHHHHHHhhcCCeEEEEeCCCChHHHHHHHHHH
Q psy2046 39 GHRVLIFSQ------FIFVLDILGHYMDIRGWRHLRLDGATQVSSRQELIDEY 85 (138)
Q Consensus 39 ~~k~iif~~------~~~~~~~l~~~l~~~g~~~~~i~g~~~~~~R~~~~~~F 85 (138)
..+++||+. +.-......+.|...|++|..++=......+..+.+..
T Consensus 11 ~~~Vvvf~kg~~~~~~Cp~C~~ak~lL~~~~i~~~~~di~~~~~~~~~l~~~t 63 (97)
T TIGR00365 11 ENPVVLYMKGTPQFPQCGFSARAVQILKACGVPFAYVNVLEDPEIRQGIKEYS 63 (97)
T ss_pred cCCEEEEEccCCCCCCCchHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHh
Confidence 459999974 45667889999999999998887655555565555444
No 177
>cd03028 GRX_PICOT_like Glutaredoxin (GRX) family, PKC-interacting cousin of TRX (PICOT)-like subfamily; composed of PICOT and GRX-PICOT-like proteins. The non-PICOT members of this family contain only the GRX-like domain, whereas PICOT contains an N-terminal TRX-like domain followed by one to three GRX-like domains. It is interesting to note that PICOT from plants contain three repeats of the GRX-like domain, metazoan proteins (except for insect) have two repeats, while fungal sequences contain only one copy of the domain. PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli. Both GRX and TRX domains of PICOT are required for its activity. Characterized non-PICOT members of this family include CXIP1, a CAX-interacting protein
Probab=93.12 E-value=1 Score=26.47 Aligned_cols=45 Identities=16% Similarity=0.076 Sum_probs=32.8
Q ss_pred CCeEEEEec------cHHHHHHHHHHHhhcCCeEEEEeCCCChHHHHHHHH
Q psy2046 39 GHRVLIFSQ------FIFVLDILGHYMDIRGWRHLRLDGATQVSSRQELID 83 (138)
Q Consensus 39 ~~k~iif~~------~~~~~~~l~~~l~~~g~~~~~i~g~~~~~~R~~~~~ 83 (138)
+.+++||+. +......+.+.|...|++|..++=....+.+..+.+
T Consensus 7 ~~~vvvf~k~~~~~~~Cp~C~~ak~~L~~~~i~y~~idv~~~~~~~~~l~~ 57 (90)
T cd03028 7 ENPVVLFMKGTPEEPRCGFSRKVVQILNQLGVDFGTFDILEDEEVRQGLKE 57 (90)
T ss_pred cCCEEEEEcCCCCCCCCcHHHHHHHHHHHcCCCeEEEEcCCCHHHHHHHHH
Confidence 458999986 556788999999999999988875545444443333
No 178
>COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription]
Probab=93.11 E-value=2.4 Score=34.31 Aligned_cols=93 Identities=15% Similarity=0.120 Sum_probs=68.5
Q ss_pred CchHHHHHHHHHHhhhCCCeEEEEeccH----HHHHHHHHHHhhcCCeEEEEeCCCChHHHHHHHHHHhcCCCceEEEEe
Q psy2046 22 SGKLKKLDEILPDLKKNGHRVLIFSQFI----FVLDILGHYMDIRGWRHLRLDGATQVSSRQELIDEYNRDQDLFAFLLS 97 (138)
Q Consensus 22 s~K~~~l~~ll~~~~~~~~k~iif~~~~----~~~~~l~~~l~~~g~~~~~i~g~~~~~~R~~~~~~F~~~~~~~vll~~ 97 (138)
|+|.-...-..-...++|.++.+-+++- ...+.+.++|...|+.+..++|++...+|.+++++-.+|.. .+++.+
T Consensus 294 SGKTvVA~laml~ai~~G~Q~ALMAPTEILA~QH~~~~~~~l~~~~i~V~lLtG~~kgk~r~~~l~~l~~G~~-~ivVGT 372 (677)
T COG1200 294 SGKTVVALLAMLAAIEAGYQAALMAPTEILAEQHYESLRKWLEPLGIRVALLTGSLKGKARKEILEQLASGEI-DIVVGT 372 (677)
T ss_pred CCHHHHHHHHHHHHHHcCCeeEEeccHHHHHHHHHHHHHHHhhhcCCeEEEeecccchhHHHHHHHHHhCCCC-CEEEEc
Confidence 5564443333333457788888888865 33556888888889999999999999999999999988854 456666
Q ss_pred ccccccccCcCccCEEEE
Q psy2046 98 TKAGGLGINLTAADTVII 115 (138)
Q Consensus 98 ~~~~~~Gl~l~~~~~vi~ 115 (138)
-...-..+.+.+.-.||+
T Consensus 373 HALiQd~V~F~~LgLVIi 390 (677)
T COG1200 373 HALIQDKVEFHNLGLVII 390 (677)
T ss_pred chhhhcceeecceeEEEE
Confidence 555667788777776666
No 179
>PRK14701 reverse gyrase; Provisional
Probab=92.30 E-value=2.3 Score=38.12 Aligned_cols=79 Identities=10% Similarity=0.076 Sum_probs=55.2
Q ss_pred cCchHHHHHHHHHHhhhCCCeEEEEeccHHHHHHHHHHHhhc------CCeEEEEeCCCChHHHHHHHHHHhcCCCceEE
Q psy2046 21 ESGKLKKLDEILPDLKKNGHRVLIFSQFIFVLDILGHYMDIR------GWRHLRLDGATQVSSRQELIDEYNRDQDLFAF 94 (138)
Q Consensus 21 ~s~K~~~l~~ll~~~~~~~~k~iif~~~~~~~~~l~~~l~~~------g~~~~~i~g~~~~~~R~~~~~~F~~~~~~~vl 94 (138)
-++|.....-+.......+.+++|.++++.-+..+.+.|+.. ++.+..++|+++..++.+.++.++.++ ..++
T Consensus 104 GsGKTl~~~~~al~~~~~g~~aLVl~PTreLa~Qi~~~l~~l~~~~~~~v~v~~~~g~~s~~e~~~~~~~l~~g~-~dIL 182 (1638)
T PRK14701 104 GMGKSTFGAFIALFLALKGKKCYIILPTTLLVKQTVEKIESFCEKANLDVRLVYYHSNLRKKEKEEFLERIENGD-FDIL 182 (1638)
T ss_pred CCCHHHHHHHHHHHHHhcCCeEEEEECHHHHHHHHHHHHHHHHhhcCCceeEEEEeCCCCHHHHHHHHHHHhcCC-CCEE
Confidence 467776333222223345779999999998877777777652 466788999999999988999887663 3456
Q ss_pred EEeccc
Q psy2046 95 LLSTKA 100 (138)
Q Consensus 95 l~~~~~ 100 (138)
++++..
T Consensus 183 V~TPgr 188 (1638)
T PRK14701 183 VTTAQF 188 (1638)
T ss_pred EECCch
Confidence 666543
No 180
>TIGR01054 rgy reverse gyrase. Generally, these gyrases are encoded as a single polypeptide. An exception was found in Methanopyrus kandleri, where enzyme is split within the topoisomerase domain, yielding a heterodimer of gene products designated RgyB and RgyA.
Probab=91.64 E-value=2.7 Score=36.47 Aligned_cols=81 Identities=14% Similarity=0.091 Sum_probs=55.9
Q ss_pred cCchHHHHHHHHHHhhhCCCeEEEEeccHHHHHHHHHHHhhc----CCeE---EEEeCCCChHHHHHHHHHHhcCCCceE
Q psy2046 21 ESGKLKKLDEILPDLKKNGHRVLIFSQFIFVLDILGHYMDIR----GWRH---LRLDGATQVSSRQELIDEYNRDQDLFA 93 (138)
Q Consensus 21 ~s~K~~~l~~ll~~~~~~~~k~iif~~~~~~~~~l~~~l~~~----g~~~---~~i~g~~~~~~R~~~~~~F~~~~~~~v 93 (138)
-++|.....-++..+...+.+++|.+++..-+..+.+.+... |+.. ..+||+++..++.+.++.++++ ...+
T Consensus 103 GsGKT~f~l~~~~~l~~~g~~vLIL~PTreLa~Qi~~~l~~l~~~~~i~~~~i~~~~Gg~~~~e~~~~~~~l~~~-~~dI 181 (1171)
T TIGR01054 103 GVGKTTFGLAMSLFLAKKGKRCYIILPTTLLVIQVAEKISSLAEKAGVGTVNIGAYHSRLPTKEKKEFMERIENG-DFDI 181 (1171)
T ss_pred CCCHHHHHHHHHHHHHhcCCeEEEEeCHHHHHHHHHHHHHHHHHhcCCceeeeeeecCCCCHHHHHHHHHHHhcC-CCCE
Confidence 467876554444444556789999999998877766666543 4443 3589999999998889988865 3445
Q ss_pred EEEeccccc
Q psy2046 94 FLLSTKAGG 102 (138)
Q Consensus 94 ll~~~~~~~ 102 (138)
++.++....
T Consensus 182 lV~Tp~rL~ 190 (1171)
T TIGR01054 182 LITTTMFLS 190 (1171)
T ss_pred EEECHHHHH
Confidence 666665443
No 181
>TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=91.48 E-value=4.1 Score=31.53 Aligned_cols=79 Identities=6% Similarity=0.127 Sum_probs=58.4
Q ss_pred CCeEEEEeccHHHHHHHHHHHhhcCCeEEEEeCCCChHHHHHHHHHHhcCCCceEEEEecccccccc-------CcCccC
Q psy2046 39 GHRVLIFSQFIFVLDILGHYMDIRGWRHLRLDGATQVSSRQELIDEYNRDQDLFAFLLSTKAGGLGI-------NLTAAD 111 (138)
Q Consensus 39 ~~k~iif~~~~~~~~~l~~~l~~~g~~~~~i~g~~~~~~R~~~~~~F~~~~~~~vll~~~~~~~~Gl-------~l~~~~ 111 (138)
+..+||.++.+.-.......|...|+++..++|..+..++..++.....+ ...++++++....... ......
T Consensus 51 ~~~~lVi~P~~~L~~dq~~~l~~~gi~~~~l~~~~~~~~~~~i~~~~~~~-~~~il~~TPe~l~~~~~~~~~l~~~~~i~ 129 (470)
T TIGR00614 51 DGITLVISPLISLMEDQVLQLKASGIPATFLNSSQSKEQQKNVLTDLKDG-KIKLLYVTPEKCSASNRLLQTLEERKGIT 129 (470)
T ss_pred CCcEEEEecHHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhcC-CCCEEEECHHHHcCchhHHHHHHhcCCcC
Confidence 45789999998877777777888899999999999999888888888665 4566777776544332 334556
Q ss_pred EEEEeCC
Q psy2046 112 TVIIHDV 118 (138)
Q Consensus 112 ~vi~~~~ 118 (138)
.+|+=+.
T Consensus 130 ~iViDEa 136 (470)
T TIGR00614 130 LIAVDEA 136 (470)
T ss_pred EEEEeCC
Confidence 6666433
No 182
>COG1197 Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription]
Probab=91.45 E-value=3.4 Score=35.51 Aligned_cols=93 Identities=10% Similarity=0.053 Sum_probs=69.7
Q ss_pred CchHHHHHHHHHHhhhCCCeEEEEeccHHHHHH----HHHHHhhcCCeEEEEeCCCChHHHHHHHHHHhcCCCceEEEEe
Q psy2046 22 SGKLKKLDEILPDLKKNGHRVLIFSQFIFVLDI----LGHYMDIRGWRHLRLDGATQVSSRQELIDEYNRDQDLFAFLLS 97 (138)
Q Consensus 22 s~K~~~l~~ll~~~~~~~~k~iif~~~~~~~~~----l~~~l~~~g~~~~~i~g~~~~~~R~~~~~~F~~~~~~~vll~~ 97 (138)
-+|....+...-....+|++|.|.+++.--++. +.+.+...++++..+..=.+.++...+++..++|+ +.+++.+
T Consensus 626 FGKTEVAmRAAFkAV~~GKQVAvLVPTTlLA~QHy~tFkeRF~~fPV~I~~LSRF~s~kE~~~il~~la~G~-vDIvIGT 704 (1139)
T COG1197 626 FGKTEVAMRAAFKAVMDGKQVAVLVPTTLLAQQHYETFKERFAGFPVRIEVLSRFRSAKEQKEILKGLAEGK-VDIVIGT 704 (1139)
T ss_pred CcHHHHHHHHHHHHhcCCCeEEEEcccHHhHHHHHHHHHHHhcCCCeeEEEecccCCHHHHHHHHHHHhcCC-ccEEEec
Confidence 368777777665556678999999998855544 44444445667778888889999999999999985 4578888
Q ss_pred ccccccccCcCccCEEEE
Q psy2046 98 TKAGGLGINLTAADTVII 115 (138)
Q Consensus 98 ~~~~~~Gl~l~~~~~vi~ 115 (138)
-+..+.++.+.+---+|+
T Consensus 705 HrLL~kdv~FkdLGLlII 722 (1139)
T COG1197 705 HRLLSKDVKFKDLGLLII 722 (1139)
T ss_pred hHhhCCCcEEecCCeEEE
Confidence 788888887776666655
No 183
>KOG2340|consensus
Probab=91.43 E-value=0.52 Score=37.08 Aligned_cols=103 Identities=15% Similarity=0.171 Sum_probs=75.5
Q ss_pred chHHHHHHHH-HHhhhC-CCeEEEEeccHHHHHHHHHHHhhcCCeEEEEeCCCChHHHHHHHHHHhcCCCceEEEEeccc
Q psy2046 23 GKLKKLDEIL-PDLKKN-GHRVLIFSQFIFVLDILGHYMDIRGWRHLRLDGATQVSSRQELIDEYNRDQDLFAFLLSTKA 100 (138)
Q Consensus 23 ~K~~~l~~ll-~~~~~~-~~k~iif~~~~~~~~~l~~~l~~~g~~~~~i~g~~~~~~R~~~~~~F~~~~~~~vll~~~~~ 100 (138)
.++..+.+.| -.+.+. ..-++||.++--+.-.+..++++.++.++.++--.+.+.-.++-+-|..+.. .++|.+-.+
T Consensus 534 ~RFkyFv~~ImPq~~k~t~s~~LiyIPSYfDFVRvRNy~K~e~i~F~~i~EYssk~~vsRAR~lF~qgr~-~vlLyTER~ 612 (698)
T KOG2340|consen 534 ARFKYFVDKIMPQLIKRTESGILIYIPSYFDFVRVRNYMKKEEISFVMINEYSSKSKVSRARELFFQGRK-SVLLYTERA 612 (698)
T ss_pred HHHHHHHHhhchhhcccccCceEEEecchhhHHHHHHHhhhhhcchHHHhhhhhHhhhhHHHHHHHhcCc-eEEEEehhh
Confidence 4566555444 333333 2468999999888899999999999999999888888888888888988755 445544222
Q ss_pred -cccccCcCccCEEEEeCCCCCccchh
Q psy2046 101 -GGLGINLTAADTVIIHDVDFNPYNDK 126 (138)
Q Consensus 101 -~~~Gl~l~~~~~vi~~~~~~~~~~~~ 126 (138)
.=+-..+.++..||+|.||-+|-=|.
T Consensus 613 hffrR~~ikGVk~vVfYqpP~~P~FYs 639 (698)
T KOG2340|consen 613 HFFRRYHIKGVKNVVFYQPPNNPHFYS 639 (698)
T ss_pred hhhhhheecceeeEEEecCCCCcHHHH
Confidence 12556678899999999998886543
No 184
>KOG0925|consensus
Probab=91.33 E-value=2.5 Score=33.20 Aligned_cols=88 Identities=10% Similarity=0.037 Sum_probs=53.3
Q ss_pred chHHHHHHHHHHhhh--CCCeEEEEeccHHHHHHHHHHHhhc---------CCeEEEEeCCCChHHHHHHHHHHh---cC
Q psy2046 23 GKLKKLDEILPDLKK--NGHRVLIFSQFIFVLDILGHYMDIR---------GWRHLRLDGATQVSSRQELIDEYN---RD 88 (138)
Q Consensus 23 ~K~~~l~~ll~~~~~--~~~k~iif~~~~~~~~~l~~~l~~~---------g~~~~~i~g~~~~~~R~~~~~~F~---~~ 88 (138)
.-++..+..+-+++. ...-+++|-..-+.++...+.+.+. .+.+..+| +.+..++++--. ++
T Consensus 235 DylEaairtV~qih~~ee~GDilvFLtgeeeIe~aC~~i~re~~~L~~~~g~l~v~PLy----P~~qq~iFep~p~~~~~ 310 (699)
T KOG0925|consen 235 DYLEAAIRTVLQIHMCEEPGDILVFLTGEEEIEDACRKISREVDNLGPQVGPLKVVPLY----PAQQQRIFEPAPEKRNG 310 (699)
T ss_pred hHHHHHHHHHHHHHhccCCCCEEEEecCHHHHHHHHHHHHHHHHhhccccCCceEEecC----chhhccccCCCCcccCC
Confidence 346666666655543 2346899988877776655555432 23456666 233333322211 23
Q ss_pred CCceEEEEeccccccccCcCccCEEE
Q psy2046 89 QDLFAFLLSTKAGGLGINLTAADTVI 114 (138)
Q Consensus 89 ~~~~vll~~~~~~~~Gl~l~~~~~vi 114 (138)
...+-++++|..+...+.+.++-+||
T Consensus 311 ~~~RkvVvstniaetsltidgiv~VI 336 (699)
T KOG0925|consen 311 AYGRKVVVSTNIAETSLTIDGIVFVI 336 (699)
T ss_pred CccceEEEEecchheeeeeccEEEEe
Confidence 34456888999999999988876665
No 185
>PRK05728 DNA polymerase III subunit chi; Validated
Probab=91.25 E-value=0.83 Score=29.53 Aligned_cols=41 Identities=20% Similarity=0.050 Sum_probs=36.0
Q ss_pred ccCchHHHHHHHHHHhhhCCCeEEEEeccHHHHHHHHHHHh
Q psy2046 20 VESGKLKKLDEILPDLKKNGHRVLIFSQFIFVLDILGHYMD 60 (138)
Q Consensus 20 ~~s~K~~~l~~ll~~~~~~~~k~iif~~~~~~~~~l~~~l~ 60 (138)
..+++...+++++......|.+++|++.....++.|-+.|=
T Consensus 10 ~~~~~~~~~c~L~~ka~~~g~rv~I~~~d~~~a~~lD~~LW 50 (142)
T PRK05728 10 TLSALEALLCELAEKALRAGWRVLVQCEDEEQAEALDEALW 50 (142)
T ss_pred CchhHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHhc
Confidence 35668999999999999999999999999998888888883
No 186
>PRK10824 glutaredoxin-4; Provisional
Probab=91.23 E-value=2.4 Score=26.43 Aligned_cols=56 Identities=11% Similarity=0.033 Sum_probs=35.6
Q ss_pred CCeEEEEec------cHHHHHHHHHHHhhcCCeEEEEeCCCChHHHHHHHHHHhcCCC-ceEEE
Q psy2046 39 GHRVLIFSQ------FIFVLDILGHYMDIRGWRHLRLDGATQVSSRQELIDEYNRDQD-LFAFL 95 (138)
Q Consensus 39 ~~k~iif~~------~~~~~~~l~~~l~~~g~~~~~i~g~~~~~~R~~~~~~F~~~~~-~~vll 95 (138)
..+++||+. +.-........|...|+.+..+.=......|. .+..+...+. ++|++
T Consensus 14 ~~~Vvvf~Kg~~~~p~Cpyc~~ak~lL~~~~i~~~~idi~~d~~~~~-~l~~~sg~~TVPQIFI 76 (115)
T PRK10824 14 ENPILLYMKGSPKLPSCGFSAQAVQALSACGERFAYVDILQNPDIRA-ELPKYANWPTFPQLWV 76 (115)
T ss_pred cCCEEEEECCCCCCCCCchHHHHHHHHHHcCCCceEEEecCCHHHHH-HHHHHhCCCCCCeEEE
Confidence 458999997 45678888899988888876665444444343 4555543333 44444
No 187
>PRK06646 DNA polymerase III subunit chi; Provisional
Probab=91.15 E-value=0.93 Score=29.81 Aligned_cols=41 Identities=10% Similarity=0.061 Sum_probs=36.9
Q ss_pred cccCchHHHHHHHHHHhhhCCCeEEEEeccHHHHHHHHHHH
Q psy2046 19 VVESGKLKKLDEILPDLKKNGHRVLIFSQFIFVLDILGHYM 59 (138)
Q Consensus 19 ~~~s~K~~~l~~ll~~~~~~~~k~iif~~~~~~~~~l~~~l 59 (138)
...+++...+++|+......|.|++|.+.....+..|-+.|
T Consensus 9 L~~~~~~~~acrL~~Ka~~~G~rv~I~~~d~~~~~~LD~~L 49 (154)
T PRK06646 9 TSDELLLKSILLLIEKCYYSDLKSVILTADADQQEMLNKNL 49 (154)
T ss_pred eCCChHHHHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHHh
Confidence 35778999999999999999999999999888888888887
No 188
>COG1110 Reverse gyrase [DNA replication, recombination, and repair]
Probab=90.88 E-value=2.9 Score=35.59 Aligned_cols=77 Identities=16% Similarity=0.110 Sum_probs=49.7
Q ss_pred chHHHHHHHHHHhhhCCCeEEEEeccHHHHHHHHHHHh----hcC-CeEEE-EeCCCChHHHHHHHHHHhcCCCceEEEE
Q psy2046 23 GKLKKLDEILPDLKKNGHRVLIFSQFIFVLDILGHYMD----IRG-WRHLR-LDGATQVSSRQELIDEYNRDQDLFAFLL 96 (138)
Q Consensus 23 ~K~~~l~~ll~~~~~~~~k~iif~~~~~~~~~l~~~l~----~~g-~~~~~-i~g~~~~~~R~~~~~~F~~~~~~~vll~ 96 (138)
+|....+-+-..+...|.++++..++..-.....+.|+ ..+ ..... +||.++..++++++++|.+|.- .+++.
T Consensus 109 GKTTfg~~~sl~~a~kgkr~yii~PT~~Lv~Q~~~kl~~~~e~~~~~~~~~~yh~~l~~~ekee~le~i~~gdf-dIlit 187 (1187)
T COG1110 109 GKTTFGLLMSLYLAKKGKRVYIIVPTTTLVRQVYERLKKFAEDAGSLDVLVVYHSALPTKEKEEALERIESGDF-DILIT 187 (1187)
T ss_pred chhHHHHHHHHHHHhcCCeEEEEecCHHHHHHHHHHHHHHHhhcCCcceeeeeccccchHHHHHHHHHHhcCCc-cEEEE
Confidence 55554443333445667899888888765554444444 344 33322 9999999999999999998754 44554
Q ss_pred eccc
Q psy2046 97 STKA 100 (138)
Q Consensus 97 ~~~~ 100 (138)
++.-
T Consensus 188 Ts~F 191 (1187)
T COG1110 188 TSQF 191 (1187)
T ss_pred eHHH
Confidence 4433
No 189
>cd03418 GRX_GRXb_1_3_like Glutaredoxin (GRX) family, GRX bacterial class 1 and 3 (b_1_3)-like subfamily; composed of bacterial GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known i
Probab=90.83 E-value=1.8 Score=24.11 Aligned_cols=45 Identities=18% Similarity=0.135 Sum_probs=33.6
Q ss_pred EEEEe-ccHHHHHHHHHHHhhcCCeEEEEeCCCChHHHHHHHHHHh
Q psy2046 42 VLIFS-QFIFVLDILGHYMDIRGWRHLRLDGATQVSSRQELIDEYN 86 (138)
Q Consensus 42 ~iif~-~~~~~~~~l~~~l~~~g~~~~~i~g~~~~~~R~~~~~~F~ 86 (138)
+.+|+ +..........+|.+.++++..++-....+.+.+..+...
T Consensus 2 i~ly~~~~Cp~C~~ak~~L~~~~i~~~~i~i~~~~~~~~~~~~~~~ 47 (75)
T cd03418 2 VEIYTKPNCPYCVRAKALLDKKGVDYEEIDVDGDPALREEMINRSG 47 (75)
T ss_pred EEEEeCCCChHHHHHHHHHHHCCCcEEEEECCCCHHHHHHHHHHhC
Confidence 55665 4446678889999999999999888877666766666554
No 190
>KOG0352|consensus
Probab=90.47 E-value=0.95 Score=34.88 Aligned_cols=74 Identities=12% Similarity=0.178 Sum_probs=56.3
Q ss_pred HHHHHHHhhhCCCeEEEEeccHHHHHHHHHHHhhcCCeEEEEeCCCChHHHHHHHHHHhc-CCCceEEEEeccccc
Q psy2046 28 LDEILPDLKKNGHRVLIFSQFIFVLDILGHYMDIRGWRHLRLDGATQVSSRQELIDEYNR-DQDLFAFLLSTKAGG 102 (138)
Q Consensus 28 l~~ll~~~~~~~~k~iif~~~~~~~~~l~~~l~~~g~~~~~i~g~~~~~~R~~~~~~F~~-~~~~~vll~~~~~~~ 102 (138)
|+--|-.+...| =+|||++....+.-=-+.|.+..+++..+++.+|..+|.+++.+... .+..++|.+++..++
T Consensus 51 LCyQLPaL~~~g-ITIV~SPLiALIkDQiDHL~~LKVp~~SLNSKlSt~ER~ri~~DL~~ekp~~K~LYITPE~AA 125 (641)
T KOG0352|consen 51 LCYQLPALVHGG-ITIVISPLIALIKDQIDHLKRLKVPCESLNSKLSTVERSRIMGDLAKEKPTIKMLYITPEGAA 125 (641)
T ss_pred hhhhchHHHhCC-eEEEehHHHHHHHHHHHHHHhcCCchhHhcchhhHHHHHHHHHHHHhcCCceeEEEEchhhhh
Confidence 333333334444 78999999887776667788889999999999999999999999884 455677777776655
No 191
>KOG0347|consensus
Probab=89.88 E-value=2.2 Score=34.01 Aligned_cols=58 Identities=10% Similarity=0.102 Sum_probs=45.6
Q ss_pred CCCe--EEEEeccHHHHHHHHHHHhh----cCCeEEEEeCCCChHHHHHHHHHHhcCCCceEEEEeccc
Q psy2046 38 NGHR--VLIFSQFIFVLDILGHYMDI----RGWRHLRLDGATQVSSRQELIDEYNRDQDLFAFLLSTKA 100 (138)
Q Consensus 38 ~~~k--~iif~~~~~~~~~l~~~l~~----~g~~~~~i~g~~~~~~R~~~~~~F~~~~~~~vll~~~~~ 100 (138)
.+.+ .+|++++++-+..+.+.|.. .++.+..|.|+++....+++++. .+.++++++.-
T Consensus 260 k~~k~~~LV~tPTRELa~QV~~Hl~ai~~~t~i~v~si~GGLavqKQqRlL~~-----~p~IVVATPGR 323 (731)
T KOG0347|consen 260 KYVKPIALVVTPTRELAHQVKQHLKAIAEKTQIRVASITGGLAVQKQQRLLNQ-----RPDIVVATPGR 323 (731)
T ss_pred ccCcceeEEecChHHHHHHHHHHHHHhccccCeEEEEeechhHHHHHHHHHhc-----CCCEEEecchH
Confidence 3456 89999999998888887765 48899999999999999999987 22346666543
No 192
>COG2179 Predicted hydrolase of the HAD superfamily [General function prediction only]
Probab=89.82 E-value=4.3 Score=27.17 Aligned_cols=70 Identities=14% Similarity=0.122 Sum_probs=51.5
Q ss_pred hHHHHHHHHHHhhhCCCeEEEEeccHHHHHHHHHHHhhcCCeEEEEeCCCChHHHHHHHHHHhcCCCceEEE
Q psy2046 24 KLKKLDEILPDLKKNGHRVLIFSQFIFVLDILGHYMDIRGWRHLRLDGATQVSSRQELIDEYNRDQDLFAFL 95 (138)
Q Consensus 24 K~~~l~~ll~~~~~~~~k~iif~~~~~~~~~l~~~l~~~g~~~~~i~g~~~~~~R~~~~~~F~~~~~~~vll 95 (138)
-...+.+.+.++.+.|-+++|+++..+ ..+..+....|+++..--+.-....=.+++++++-++...+++
T Consensus 47 ~tpe~~~W~~e~k~~gi~v~vvSNn~e--~RV~~~~~~l~v~fi~~A~KP~~~~fr~Al~~m~l~~~~vvmV 116 (175)
T COG2179 47 ATPELRAWLAELKEAGIKVVVVSNNKE--SRVARAAEKLGVPFIYRAKKPFGRAFRRALKEMNLPPEEVVMV 116 (175)
T ss_pred CCHHHHHHHHHHHhcCCEEEEEeCCCH--HHHHhhhhhcCCceeecccCccHHHHHHHHHHcCCChhHEEEE
Confidence 345677888888889999999999655 5777777778888766666555566677888888665543344
No 193
>PRK11776 ATP-dependent RNA helicase DbpA; Provisional
Probab=88.20 E-value=9.1 Score=29.47 Aligned_cols=93 Identities=14% Similarity=0.139 Sum_probs=57.7
Q ss_pred cCchHHH-HHHHHHHhhhC--CCeEEEEeccHHHHHHHHHHHhhc-----CCeEEEEeCCCChHHHHHHHHHHhcCCCce
Q psy2046 21 ESGKLKK-LDEILPDLKKN--GHRVLIFSQFIFVLDILGHYMDIR-----GWRHLRLDGATQVSSRQELIDEYNRDQDLF 92 (138)
Q Consensus 21 ~s~K~~~-l~~ll~~~~~~--~~k~iif~~~~~~~~~l~~~l~~~-----g~~~~~i~g~~~~~~R~~~~~~F~~~~~~~ 92 (138)
-++|... +.-++..+... ..+++|.+++.+-+..+.+.++.. ++.+..++|+.+.....+.+. .+ +.
T Consensus 51 GsGKT~a~~lpil~~l~~~~~~~~~lil~PtreLa~Q~~~~~~~~~~~~~~~~v~~~~Gg~~~~~~~~~l~---~~--~~ 125 (460)
T PRK11776 51 GSGKTAAFGLGLLQKLDVKRFRVQALVLCPTRELADQVAKEIRRLARFIPNIKVLTLCGGVPMGPQIDSLE---HG--AH 125 (460)
T ss_pred CCcHHHHHHHHHHHHhhhccCCceEEEEeCCHHHHHHHHHHHHHHHhhCCCcEEEEEECCCChHHHHHHhc---CC--CC
Confidence 4677654 33444443222 347899999998888777776643 577888999998765544333 33 34
Q ss_pred EEEEeccccc-----cccCcCccCEEEEeCC
Q psy2046 93 AFLLSTKAGG-----LGINLTAADTVIIHDV 118 (138)
Q Consensus 93 vll~~~~~~~-----~Gl~l~~~~~vi~~~~ 118 (138)
++++++...- ..+++.+...+|+=+.
T Consensus 126 IvV~Tp~rl~~~l~~~~~~l~~l~~lViDEa 156 (460)
T PRK11776 126 IIVGTPGRILDHLRKGTLDLDALNTLVLDEA 156 (460)
T ss_pred EEEEChHHHHHHHHcCCccHHHCCEEEEECH
Confidence 4665544322 3466777777776433
No 194
>PF13245 AAA_19: Part of AAA domain
Probab=87.98 E-value=1.3 Score=25.30 Aligned_cols=39 Identities=26% Similarity=0.355 Sum_probs=33.3
Q ss_pred cCchHHHHHHHHHHhhhC----CCeEEEEeccHHHHHHHHHHH
Q psy2046 21 ESGKLKKLDEILPDLKKN----GHRVLIFSQFIFVLDILGHYM 59 (138)
Q Consensus 21 ~s~K~~~l~~ll~~~~~~----~~k~iif~~~~~~~~~l~~~l 59 (138)
-++|-..+.+.+..+... ++++++.+......+.+.+.+
T Consensus 20 GtGKT~~~~~~i~~l~~~~~~~~~~vlv~a~t~~aa~~l~~rl 62 (76)
T PF13245_consen 20 GTGKTTTLAARIAELLAARADPGKRVLVLAPTRAAADELRERL 62 (76)
T ss_pred CCCHHHHHHHHHHHHHHHhcCCCCeEEEECCCHHHHHHHHHHH
Confidence 468998888888887755 789999999999999999888
No 195
>PF04364 DNA_pol3_chi: DNA polymerase III chi subunit, HolC; InterPro: IPR007459 The DNA polymerase III holoenzyme (2.7.7.7 from EC) is the polymerase responsible for the replication of the Escherichia coli chromosome. The holoenzyme is composed of the DNA polymerase III core, the sliding clamp, and the DnaX clamp loading complex. The DnaX complex contains either the tau or gamma product of gene dnax, complexed to delta.delta and to chi psi. Chi forms a 1:1 heterodimer with psi. The chi psi complex functions by increasing the affinity of tau and gamma for delta.delta allowing a functional clamp-loading complex to form at physiological subunit concentrations. Psi is responsible for the interaction with DnaX (gamma/tau), but psi is insoluble unless it is in a complex with chi [].; GO: 0003677 DNA binding, 0003887 DNA-directed DNA polymerase activity, 0006260 DNA replication; PDB: 3SXU_A 1EM8_C.
Probab=87.87 E-value=1.7 Score=27.91 Aligned_cols=37 Identities=14% Similarity=0.082 Sum_probs=30.2
Q ss_pred HHHHHHHHHHhhhCCCeEEEEeccHHHHHHHHHHHhh
Q psy2046 25 LKKLDEILPDLKKNGHRVLIFSQFIFVLDILGHYMDI 61 (138)
Q Consensus 25 ~~~l~~ll~~~~~~~~k~iif~~~~~~~~~l~~~l~~ 61 (138)
...+++++......|.+++|++.....++.|-+.|=.
T Consensus 15 ~~~~c~L~~k~~~~g~rv~V~~~d~~~a~~lD~~LW~ 51 (137)
T PF04364_consen 15 ERFACRLAEKAYRQGQRVLVLCPDEEQAEALDELLWT 51 (137)
T ss_dssp HHHHHHHHHHHHHTT--EEEE-SSHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHHC
Confidence 4889999999999999999999999999999998843
No 196
>cd01524 RHOD_Pyr_redox Member of the Rhodanese Homology Domain superfamily. Included in this CD are the Lactococcus lactis NADH oxidase, Bacillus cereus NADH dehydrogenase, and Bacteroides thetaiotaomicron pyridine nucleotide-disulphide oxidoreductase, and similar rhodanese-like domains found C-terminal of the pyridine nucleotide-disulphide oxidoreductase (Pyr-redox) domain and the Pyr-redox dimerization domain.
Probab=87.76 E-value=1.1 Score=26.10 Aligned_cols=38 Identities=13% Similarity=0.287 Sum_probs=30.3
Q ss_pred hCCCeEEEEeccHHHHHHHHHHHhhcCCeEEEEeCCCC
Q psy2046 37 KNGHRVLIFSQFIFVLDILGHYMDIRGWRHLRLDGATQ 74 (138)
Q Consensus 37 ~~~~k~iif~~~~~~~~~l~~~l~~~g~~~~~i~g~~~ 74 (138)
..++++++||............|+..|+.+..+.|+++
T Consensus 49 ~~~~~vvl~c~~g~~a~~~a~~L~~~G~~v~~l~GG~~ 86 (90)
T cd01524 49 PKDKEIIVYCAVGLRGYIAARILTQNGFKVKNLDGGYK 86 (90)
T ss_pred CCCCcEEEEcCCChhHHHHHHHHHHCCCCEEEecCCHH
Confidence 44678999998766677778888889988888999864
No 197
>cd06533 Glyco_transf_WecG_TagA The glycosyltransferase WecG/TagA superfamily contains Escherichia coli WecG, Bacillus subtilis TagA and related proteins. E. coli WecG is believed to be a UDP-N-acetyl-D-mannosaminuronic acid transferase, and is involved in enterobacterial common antigen (eca) synthesis. B. subtilis TagA plays a key role in the Wall Teichoic Acid (WTA) biosynthetic pathway, catalyzing the transfer of N-acetylmannosamine to the C4 hydroxyl of a membrane-anchored N-acetylglucosaminyl diphospholipid to make ManNAc-beta-(1,4)-GlcNAc-pp-undecaprenyl. This is the first committed step in this pathway. Also included in this group is Xanthomonas campestris pv. campestris GumM, a glycosyltransferase participating in the biosynthesis of the exopolysaccharide xanthan.
Probab=87.37 E-value=6.6 Score=26.11 Aligned_cols=74 Identities=16% Similarity=0.200 Sum_probs=53.7
Q ss_pred HHHHHHHHHHhhhCCCeEEEEeccHHHHHHHHHHHhhc--CCeEEE-EeCCCChHHHHHHHHHHhcCCCceEEEEecc
Q psy2046 25 LKKLDEILPDLKKNGHRVLIFSQFIFVLDILGHYMDIR--GWRHLR-LDGATQVSSRQELIDEYNRDQDLFAFLLSTK 99 (138)
Q Consensus 25 ~~~l~~ll~~~~~~~~k~iif~~~~~~~~~l~~~l~~~--g~~~~~-i~g~~~~~~R~~~~~~F~~~~~~~vll~~~~ 99 (138)
.+.+.++++...+++.++-++-...+.++.+.+.|++. |+.++. .+|.....+...+++..+... +.++++...
T Consensus 32 ~dl~~~ll~~~~~~~~~v~llG~~~~~~~~~~~~l~~~yp~l~i~g~~~g~~~~~~~~~i~~~I~~~~-pdiv~vglG 108 (171)
T cd06533 32 SDLMPALLELAAQKGLRVFLLGAKPEVLEKAAERLRARYPGLKIVGYHHGYFGPEEEEEIIERINASG-ADILFVGLG 108 (171)
T ss_pred HHHHHHHHHHHHHcCCeEEEECCCHHHHHHHHHHHHHHCCCcEEEEecCCCCChhhHHHHHHHHHHcC-CCEEEEECC
Confidence 34555666666667889999999999999999888876 666555 678887777777788777553 345665443
No 198
>COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]
Probab=87.06 E-value=12 Score=29.51 Aligned_cols=89 Identities=15% Similarity=0.184 Sum_probs=58.7
Q ss_pred Cch-HHHHHHHHHHhh--hCCCe--EEEEeccHHHHHHHHHHHhhc-----CCeEEEEeCCCChHHHHHHHHHHhcCCCc
Q psy2046 22 SGK-LKKLDEILPDLK--KNGHR--VLIFSQFIFVLDILGHYMDIR-----GWRHLRLDGATQVSSRQELIDEYNRDQDL 91 (138)
Q Consensus 22 s~K-~~~l~~ll~~~~--~~~~k--~iif~~~~~~~~~l~~~l~~~-----g~~~~~i~g~~~~~~R~~~~~~F~~~~~~ 91 (138)
++| +..++.+|..+. ..... .||.+++++-+..+.+.+... ++.+..++|+++...+...++. + +
T Consensus 77 sGKT~Af~lP~l~~l~~~~~~~~~~aLil~PTRELA~Qi~~~~~~~~~~~~~~~~~~i~GG~~~~~q~~~l~~---~--~ 151 (513)
T COG0513 77 TGKTAAFLLPLLQKILKSVERKYVSALILAPTRELAVQIAEELRKLGKNLGGLRVAVVYGGVSIRKQIEALKR---G--V 151 (513)
T ss_pred ChHHHHHHHHHHHHHhcccccCCCceEEECCCHHHHHHHHHHHHHHHhhcCCccEEEEECCCCHHHHHHHHhc---C--C
Confidence 456 334556776654 22222 899999998888777777653 4668899999987766655554 4 4
Q ss_pred eEEEEeccc----cccc-cCcCccCEEEE
Q psy2046 92 FAFLLSTKA----GGLG-INLTAADTVII 115 (138)
Q Consensus 92 ~vll~~~~~----~~~G-l~l~~~~~vi~ 115 (138)
.++++++.- ...+ +++....++|+
T Consensus 152 ~ivVaTPGRllD~i~~~~l~l~~v~~lVl 180 (513)
T COG0513 152 DIVVATPGRLLDLIKRGKLDLSGVETLVL 180 (513)
T ss_pred CEEEECccHHHHHHHcCCcchhhcCEEEe
Confidence 456665542 2333 77778888877
No 199
>cd03031 GRX_GRX_like Glutaredoxin (GRX) family, GRX-like domain containing protein subfamily; composed of uncharacterized eukaryotic proteins containing a GRX-like domain having only one conserved cysteine, aligning to the C-terminal cysteine of the CXXC motif of GRXs. This subfamily is predominantly composed of plant proteins. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins via a redox active CXXC motif using a similar dithiol mechanism employed by TRXs. GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. Proteins containing only the C-terminal cysteine are generally redox inactive.
Probab=86.61 E-value=6.5 Score=25.63 Aligned_cols=46 Identities=13% Similarity=0.096 Sum_probs=34.3
Q ss_pred eEEEEecc-------HHHHHHHHHHHhhcCCeEEEEeCCCChHHHHHHHHHHh
Q psy2046 41 RVLIFSQF-------IFVLDILGHYMDIRGWRHLRLDGATQVSSRQELIDEYN 86 (138)
Q Consensus 41 k~iif~~~-------~~~~~~l~~~l~~~g~~~~~i~g~~~~~~R~~~~~~F~ 86 (138)
+++||+.+ -........+|+..+++|..++=++....++++.+...
T Consensus 1 ~VvlYttsl~giR~t~~~C~~ak~iL~~~~V~~~e~DVs~~~~~~~EL~~~~g 53 (147)
T cd03031 1 RVVLYTTSLRGVRKTFEDCNNVRAILESFRVKFDERDVSMDSGFREELRELLG 53 (147)
T ss_pred CEEEEEcCCcCCCCcChhHHHHHHHHHHCCCcEEEEECCCCHHHHHHHHHHhC
Confidence 46677765 46677888888888999888888887777777665543
No 200
>PF03808 Glyco_tran_WecB: Glycosyl transferase WecB/TagA/CpsF family; InterPro: IPR004629 The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in Enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.; GO: 0009058 biosynthetic process
Probab=86.42 E-value=7.5 Score=25.83 Aligned_cols=73 Identities=15% Similarity=0.216 Sum_probs=53.9
Q ss_pred HHHHHHHHHHhhhCCCeEEEEeccHHHHHHHHHHHhhc--CCeEE-EEeCCCChHHHHHHHHHHhcCCCceEEEEec
Q psy2046 25 LKKLDEILPDLKKNGHRVLIFSQFIFVLDILGHYMDIR--GWRHL-RLDGATQVSSRQELIDEYNRDQDLFAFLLST 98 (138)
Q Consensus 25 ~~~l~~ll~~~~~~~~k~iif~~~~~~~~~l~~~l~~~--g~~~~-~i~g~~~~~~R~~~~~~F~~~~~~~vll~~~ 98 (138)
.+.+..++.....++.++-++-...+.++.+...|++. ++.++ ..+|..+.++-+++++..+... +.++++..
T Consensus 34 ~dl~~~l~~~~~~~~~~ifllG~~~~~~~~~~~~l~~~yP~l~ivg~~~g~f~~~~~~~i~~~I~~~~-pdiv~vgl 109 (172)
T PF03808_consen 34 SDLFPDLLRRAEQRGKRIFLLGGSEEVLEKAAANLRRRYPGLRIVGYHHGYFDEEEEEAIINRINASG-PDIVFVGL 109 (172)
T ss_pred HHHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHHHHCCCeEEEEecCCCCChhhHHHHHHHHHHcC-CCEEEEEC
Confidence 44555666666667789999999999999999999887 66655 4666677788889999888553 34455543
No 201
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=86.26 E-value=5.5 Score=24.13 Aligned_cols=80 Identities=13% Similarity=-0.011 Sum_probs=51.2
Q ss_pred cCchHHHHHHHHHHhhh--CCCeEEEEeccHHHHHHHHHHHhhcC---CeEEEEeCCCChHHHHHHHHHHhcCCCceEEE
Q psy2046 21 ESGKLKKLDEILPDLKK--NGHRVLIFSQFIFVLDILGHYMDIRG---WRHLRLDGATQVSSRQELIDEYNRDQDLFAFL 95 (138)
Q Consensus 21 ~s~K~~~l~~ll~~~~~--~~~k~iif~~~~~~~~~l~~~l~~~g---~~~~~i~g~~~~~~R~~~~~~F~~~~~~~vll 95 (138)
-++|-..+..++..... ...++++.++.....+...+.+.... ..+..+++........ ... .....+++
T Consensus 10 G~GKT~~~~~~~~~~~~~~~~~~~lv~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~--~~~~~i~i 84 (144)
T cd00046 10 GSGKTLAALLPILELLDSLKGGQVLVLAPTRELANQVAERLKELFGEGIKVGYLIGGTSIKQQE---KLL--SGKTDIVV 84 (144)
T ss_pred CCchhHHHHHHHHHHHhcccCCCEEEEcCcHHHHHHHHHHHHHHhhCCcEEEEEecCcchhHHH---HHh--cCCCCEEE
Confidence 46787777777766554 45799999999988877777766544 6777888876544433 111 22334566
Q ss_pred Eecccccccc
Q psy2046 96 LSTKAGGLGI 105 (138)
Q Consensus 96 ~~~~~~~~Gl 105 (138)
.+........
T Consensus 85 ~t~~~~~~~~ 94 (144)
T cd00046 85 GTPGRLLDEL 94 (144)
T ss_pred ECcHHHHHHH
Confidence 6666444333
No 202
>TIGR00696 wecB_tagA_cpsF bacterial polymer biosynthesis proteins, WecB/TagA/CpsF family. The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.
Probab=84.30 E-value=10 Score=25.49 Aligned_cols=73 Identities=11% Similarity=0.079 Sum_probs=52.6
Q ss_pred HHHHHHHHHHhhhCCCeEEEEeccHHHHHHHHHHHhhc--CCeEEEEeCCCChHHHHHHHHHHhcCCCceEEEEec
Q psy2046 25 LKKLDEILPDLKKNGHRVLIFSQFIFVLDILGHYMDIR--GWRHLRLDGATQVSSRQELIDEYNRDQDLFAFLLST 98 (138)
Q Consensus 25 ~~~l~~ll~~~~~~~~k~iif~~~~~~~~~l~~~l~~~--g~~~~~i~g~~~~~~R~~~~~~F~~~~~~~vll~~~ 98 (138)
.+.+.+++.....++.++-++-.....++.+.+.|++. ++.++..+|-.++++.+.+++.-+.. .+.++++..
T Consensus 34 ~dl~~~l~~~~~~~~~~vfllG~~~~v~~~~~~~l~~~yP~l~i~g~~g~f~~~~~~~i~~~I~~s-~~dil~Vgl 108 (177)
T TIGR00696 34 PDLMEELCQRAGKEKLPIFLYGGKPDVLQQLKVKLIKEYPKLKIVGAFGPLEPEERKAALAKIARS-GAGIVFVGL 108 (177)
T ss_pred HHHHHHHHHHHHHcCCeEEEECCCHHHHHHHHHHHHHHCCCCEEEEECCCCChHHHHHHHHHHHHc-CCCEEEEEc
Confidence 34555666665566778989999999999999999876 66666668888877777777777654 334455544
No 203
>KOG0780|consensus
Probab=84.28 E-value=8.5 Score=29.50 Aligned_cols=77 Identities=18% Similarity=0.188 Sum_probs=49.2
Q ss_pred CchHHHHHHHHHHhhhCCCeEEEEeccH---HHHHHHHHHHhhcCCeEE-EEeCCCChHHHHHHHHHHhcCCCceEEEEe
Q psy2046 22 SGKLKKLDEILPDLKKNGHRVLIFSQFI---FVLDILGHYMDIRGWRHL-RLDGATQVSSRQELIDEYNRDQDLFAFLLS 97 (138)
Q Consensus 22 s~K~~~l~~ll~~~~~~~~k~iif~~~~---~~~~~l~~~l~~~g~~~~-~i~g~~~~~~R~~~~~~F~~~~~~~vll~~ 97 (138)
++|...+.++.-.+.++|.|+.+-|--. ...|.|...-.+.++++. .++...+..--.+-+++|+... .-++|+.
T Consensus 112 ~GKTTtc~KlA~y~kkkG~K~~LvcaDTFRagAfDQLkqnA~k~~iP~ygsyte~dpv~ia~egv~~fKke~-fdvIIvD 190 (483)
T KOG0780|consen 112 SGKTTTCTKLAYYYKKKGYKVALVCADTFRAGAFDQLKQNATKARVPFYGSYTEADPVKIASEGVDRFKKEN-FDVIIVD 190 (483)
T ss_pred CCcceeHHHHHHHHHhcCCceeEEeecccccchHHHHHHHhHhhCCeeEecccccchHHHHHHHHHHHHhcC-CcEEEEe
Confidence 5677777777777777777776666433 235566665556677743 3444556666777889998663 4456666
Q ss_pred cc
Q psy2046 98 TK 99 (138)
Q Consensus 98 ~~ 99 (138)
|.
T Consensus 191 TS 192 (483)
T KOG0780|consen 191 TS 192 (483)
T ss_pred CC
Confidence 53
No 204
>PTZ00062 glutaredoxin; Provisional
Probab=84.27 E-value=11 Score=25.96 Aligned_cols=68 Identities=15% Similarity=0.220 Sum_probs=44.6
Q ss_pred HHHHHHHhhhCCCeEEEEec------cHHHHHHHHHHHhhcCCeEEEEeCCCChHHHHHHHHHHhcCCCceEEEEe
Q psy2046 28 LDEILPDLKKNGHRVLIFSQ------FIFVLDILGHYMDIRGWRHLRLDGATQVSSRQELIDEYNRDQDLFAFLLS 97 (138)
Q Consensus 28 l~~ll~~~~~~~~k~iif~~------~~~~~~~l~~~l~~~g~~~~~i~g~~~~~~R~~~~~~F~~~~~~~vll~~ 97 (138)
+.+.+..+.. ..+++||+. +......+...|+..|+++..++=....+.|+. +.++...+..-.+.+.
T Consensus 102 ~~~~v~~li~-~~~Vvvf~Kg~~~~p~C~~C~~~k~~L~~~~i~y~~~DI~~d~~~~~~-l~~~sg~~TvPqVfI~ 175 (204)
T PTZ00062 102 TVEKIERLIR-NHKILLFMKGSKTFPFCRFSNAVVNMLNSSGVKYETYNIFEDPDLREE-LKVYSNWPTYPQLYVN 175 (204)
T ss_pred HHHHHHHHHh-cCCEEEEEccCCCCCCChhHHHHHHHHHHcCCCEEEEEcCCCHHHHHH-HHHHhCCCCCCeEEEC
Confidence 4444444433 459999988 567788999999999999988877666555554 4445433343334444
No 205
>TIGR01389 recQ ATP-dependent DNA helicase RecQ. The ATP-dependent DNA helicase RecQ of E. coli is about 600 residues long. This model represents bacterial proteins with a high degree of similarity in domain architecture and in primary sequence to E. coli RecQ. The model excludes eukaryotic and archaeal proteins with RecQ-like regions, as well as more distantly related bacterial helicases related to RecQ.
Probab=84.11 E-value=16 Score=29.29 Aligned_cols=62 Identities=10% Similarity=0.093 Sum_probs=48.6
Q ss_pred CCeEEEEeccHHHHHHHHHHHhhcCCeEEEEeCCCChHHHHHHHHHHhcCCCceEEEEecccc
Q psy2046 39 GHRVLIFSQFIFVLDILGHYMDIRGWRHLRLDGATQVSSRQELIDEYNRDQDLFAFLLSTKAG 101 (138)
Q Consensus 39 ~~k~iif~~~~~~~~~l~~~l~~~g~~~~~i~g~~~~~~R~~~~~~F~~~~~~~vll~~~~~~ 101 (138)
+..++|.++.+.-...-...|+..|+++..++|+.+..++..+......++ ..++++++...
T Consensus 53 ~g~~lVisPl~sL~~dq~~~l~~~gi~~~~~~s~~~~~~~~~~~~~l~~~~-~~il~~tpe~l 114 (591)
T TIGR01389 53 KGLTVVISPLISLMKDQVDQLRAAGVAAAYLNSTLSAKEQQDIEKALVNGE-LKLLYVAPERL 114 (591)
T ss_pred CCcEEEEcCCHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhCCC-CCEEEEChhHh
Confidence 446888899988777667778888999999999999999999888887664 45566665543
No 206
>cd01523 RHOD_Lact_B Member of the Rhodanese Homology Domain superfamily. This CD includes predicted proteins with rhodanese-like domains found N-terminal of the metallo-beta-lactamase domain.
Probab=83.75 E-value=2 Score=25.48 Aligned_cols=38 Identities=13% Similarity=0.164 Sum_probs=30.6
Q ss_pred hCCCeEEEEeccHHHHHHHHHHHhhcCCeEEEEeCCCC
Q psy2046 37 KNGHRVLIFSQFIFVLDILGHYMDIRGWRHLRLDGATQ 74 (138)
Q Consensus 37 ~~~~k~iif~~~~~~~~~l~~~l~~~g~~~~~i~g~~~ 74 (138)
..+++++++|..-.........|...|+.+..+.|++.
T Consensus 59 ~~~~~ivv~C~~G~rs~~aa~~L~~~G~~~~~l~GG~~ 96 (100)
T cd01523 59 PDDQEVTVICAKEGSSQFVAELLAERGYDVDYLAGGMK 96 (100)
T ss_pred CCCCeEEEEcCCCCcHHHHHHHHHHcCceeEEeCCcHH
Confidence 35678999998876777888899999999777888764
No 207
>KOG0701|consensus
Probab=82.65 E-value=0.66 Score=40.95 Aligned_cols=93 Identities=15% Similarity=0.159 Sum_probs=68.3
Q ss_pred eEEEEeccHHHHHHHHHHHhhcC-CeEEEEeCCCCh-----------HHHHHHHHHHhcCCCceEEEEeccccccccCcC
Q psy2046 41 RVLIFSQFIFVLDILGHYMDIRG-WRHLRLDGATQV-----------SSRQELIDEYNRDQDLFAFLLSTKAGGLGINLT 108 (138)
Q Consensus 41 k~iif~~~~~~~~~l~~~l~~~g-~~~~~i~g~~~~-----------~~R~~~~~~F~~~~~~~vll~~~~~~~~Gl~l~ 108 (138)
..++|++.......+.+.+...+ .....+.|.+.+ -.+.+.+..|....-. +|+.+.+.-+|++++
T Consensus 294 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~k~~~~~~~~~~~~vl~~~~~~~ln--~L~~~~~~~e~~d~~ 371 (1606)
T KOG0701|consen 294 SGIIFVDQRYTAYVLLELLREIFSNDPLFVTGASGANLWKSFKNELELRQAEVLRRFHFHELN--LLIATSVLEEGVDVP 371 (1606)
T ss_pred hheeecccchHHHHHHHHHHHhhccCcceeeccccCccchhhHHHHHhhhHHHHHHHhhhhhh--HHHHHHHHHhhcchh
Confidence 45788888877777777766542 223336665321 1345578888765433 677889999999999
Q ss_pred ccCEEEEeCCCCCccchhHHHHHHhhc
Q psy2046 109 AADTVIIHDVDFNPYNDKQAEDRCHRV 135 (138)
Q Consensus 109 ~~~~vi~~~~~~~~~~~~Q~~gR~~R~ 135 (138)
.++-++.++.+-....+.|+.||+-+.
T Consensus 372 ~~~~~~~~~~~~~~~~~vq~~~r~~~~ 398 (1606)
T KOG0701|consen 372 KCNLVVLFDAPTYYRSYVQKKGRARAA 398 (1606)
T ss_pred hhhhheeccCcchHHHHHHhhcccccc
Confidence 999999999999999999999997554
No 208
>TIGR03817 DECH_helic helicase/secretion neighborhood putative DEAH-box helicase. A conserved gene neighborhood widely spread in the Actinobacteria contains this uncharacterized DEAH-box family helicase encoded convergently towards an operon of genes for protein homologous to type II secretion and pilus formation proteins. The context suggests that this helicase may play a role in conjugal transfer of DNA.
Probab=82.65 E-value=15 Score=30.40 Aligned_cols=92 Identities=20% Similarity=0.082 Sum_probs=58.4
Q ss_pred cCchHH-HHHHHHHHhhh-CCCeEEEEeccHHHHHHHHHHHhhc---CCeEEEEeCCCChHHHHHHHHHHhcCCCceEEE
Q psy2046 21 ESGKLK-KLDEILPDLKK-NGHRVLIFSQFIFVLDILGHYMDIR---GWRHLRLDGATQVSSRQELIDEYNRDQDLFAFL 95 (138)
Q Consensus 21 ~s~K~~-~l~~ll~~~~~-~~~k~iif~~~~~~~~~l~~~l~~~---g~~~~~i~g~~~~~~R~~~~~~F~~~~~~~vll 95 (138)
-|+|.. .++-++..+.+ .+.++|+.++.++-.......++.. ++.+..++|+++.++|..+. .+ +.+++
T Consensus 61 GSGKTla~~LPiL~~l~~~~~~~aL~l~PtraLa~q~~~~l~~l~~~~i~v~~~~Gdt~~~~r~~i~----~~--~~Iiv 134 (742)
T TIGR03817 61 ASGKSLAYQLPVLSALADDPRATALYLAPTKALAADQLRAVRELTLRGVRPATYDGDTPTEERRWAR----EH--ARYVL 134 (742)
T ss_pred CCcHHHHHHHHHHHHHhhCCCcEEEEEcChHHHHHHHHHHHHHhccCCeEEEEEeCCCCHHHHHHHh----cC--CCEEE
Confidence 467754 34455555543 3468999999998877777666654 57788899999877764332 22 35577
Q ss_pred Eecccccccc---------CcCccCEEEEeCC
Q psy2046 96 LSTKAGGLGI---------NLTAADTVIIHDV 118 (138)
Q Consensus 96 ~~~~~~~~Gl---------~l~~~~~vi~~~~ 118 (138)
.+++..-.++ .+.+...||+=+.
T Consensus 135 tTPd~L~~~~L~~~~~~~~~l~~l~~vViDEa 166 (742)
T TIGR03817 135 TNPDMLHRGILPSHARWARFLRRLRYVVIDEC 166 (742)
T ss_pred EChHHHHHhhccchhHHHHHHhcCCEEEEeCh
Confidence 7766654332 1456677777443
No 209
>COG0514 RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair]
Probab=82.34 E-value=5.7 Score=31.90 Aligned_cols=61 Identities=16% Similarity=0.210 Sum_probs=48.8
Q ss_pred eEEEEeccHHHHHHHHHHHhhcCCeEEEEeCCCChHHHHHHHHHHhcCCCceEEEEeccccc
Q psy2046 41 RVLIFSQFIFVLDILGHYMDIRGWRHLRLDGATQVSSRQELIDEYNRDQDLFAFLLSTKAGG 102 (138)
Q Consensus 41 k~iif~~~~~~~~~l~~~l~~~g~~~~~i~g~~~~~~R~~~~~~F~~~~~~~vll~~~~~~~ 102 (138)
-+||-++...-..-=-+.|+..|+.+..+++..+.++|..++.....+ ..++|.+++.-..
T Consensus 59 ~TLVVSPLiSLM~DQV~~l~~~Gi~A~~lnS~l~~~e~~~v~~~l~~g-~~klLyisPErl~ 119 (590)
T COG0514 59 LTLVVSPLISLMKDQVDQLEAAGIRAAYLNSTLSREERQQVLNQLKSG-QLKLLYISPERLM 119 (590)
T ss_pred CEEEECchHHHHHHHHHHHHHcCceeehhhcccCHHHHHHHHHHHhcC-ceeEEEECchhhc
Confidence 678888877655544566678899999999999999999999999887 4567888776543
No 210
>PRK09189 uroporphyrinogen-III synthase; Validated
Probab=82.34 E-value=7.8 Score=27.01 Aligned_cols=76 Identities=13% Similarity=-0.009 Sum_probs=44.8
Q ss_pred hHHHHHHHHHHhhhCCCeEEEEeccHHHHHHHHHHHhhcCCeE--EEEeCCC-ChHHHHHHHHHHhcCCCceEEEEeccc
Q psy2046 24 KLKKLDEILPDLKKNGHRVLIFSQFIFVLDILGHYMDIRGWRH--LRLDGAT-QVSSRQELIDEYNRDQDLFAFLLSTKA 100 (138)
Q Consensus 24 K~~~l~~ll~~~~~~~~k~iif~~~~~~~~~l~~~l~~~g~~~--~~i~g~~-~~~~R~~~~~~F~~~~~~~vll~~~~~ 100 (138)
--..|.+++......++++++++... ..+.|.+.|++.|+.+ ..+|-.. .........+.+..++...+++.|+.+
T Consensus 103 ~~e~L~~~~~~~~~~~~~vL~~rg~~-~r~~l~~~L~~~G~~v~~~~vY~~~~~~~~~~~~~~~l~~~~~d~i~f~S~~~ 181 (240)
T PRK09189 103 DGVRLAETVAAALAPTARLLYLAGRP-RAPVFEDRLAAAGIPFRVAECYDMLPVMYSPATLSAILGGAPFDAVLLYSRVA 181 (240)
T ss_pred CHHHHHHHHHHhcCCCCcEEEeccCc-ccchhHHHHHhCCCeeEEEEEEEeecCCCChHHHHHHHhcCCCCEEEEeCHHH
Confidence 34556666654334577888888754 4589999999988764 2233222 222334556666665444455555444
No 211
>PF07652 Flavi_DEAD: Flavivirus DEAD domain ; InterPro: IPR011492 This is the Flavivirus DEAD domain. The domain is related to the DEAD/DEAH box helicase domain which is found in a large family of ATPases.; GO: 0005524 ATP binding, 0008026 ATP-dependent helicase activity, 0019079 viral genome replication; PDB: 2QEQ_A 2V6J_A 2V6I_A 8OHM_A 4A92_B 1JR6_A 1HEI_A 1ONB_A 1A1V_A 1YMF_A ....
Probab=81.68 E-value=11 Score=24.64 Aligned_cols=100 Identities=18% Similarity=0.241 Sum_probs=57.8
Q ss_pred cCchHHH-HHHHHHHhhhCCCeEEEEeccHHHHHHHHHHHhhcCCeEEEEeCCCChHHHHHHHHHHhcCCCceEEEEecc
Q psy2046 21 ESGKLKK-LDEILPDLKKNGHRVLIFSQFIFVLDILGHYMDIRGWRHLRLDGATQVSSRQELIDEYNRDQDLFAFLLSTK 99 (138)
Q Consensus 21 ~s~K~~~-l~~ll~~~~~~~~k~iif~~~~~~~~~l~~~l~~~g~~~~~i~g~~~~~~R~~~~~~F~~~~~~~vll~~~~ 99 (138)
-++|-.. |-+++++..+.+.|+||..+.+..++...++|+... ..++...- .+ ..| +.. .+-+++..
T Consensus 14 GaGKTr~vlp~~~~~~i~~~~rvLvL~PTRvva~em~~aL~~~~---~~~~t~~~--~~----~~~--g~~-~i~vMc~a 81 (148)
T PF07652_consen 14 GAGKTRRVLPEIVREAIKRRLRVLVLAPTRVVAEEMYEALKGLP---VRFHTNAR--MR----THF--GSS-IIDVMCHA 81 (148)
T ss_dssp TSSTTTTHHHHHHHHHHHTT--EEEEESSHHHHHHHHHHTTTSS---EEEESTTS--S----------SSS-SEEEEEHH
T ss_pred CCCCcccccHHHHHHHHHccCeEEEecccHHHHHHHHHHHhcCC---cccCceee--ec----ccc--CCC-cccccccH
Confidence 3567664 778888888889999999999999999999998543 33332221 11 223 222 23455555
Q ss_pred ccc----cccCcCccCEEEEeCCCCCccchhHHHHHH
Q psy2046 100 AGG----LGINLTAADTVIIHDVDFNPYNDKQAEDRC 132 (138)
Q Consensus 100 ~~~----~Gl~l~~~~~vi~~~~~~~~~~~~Q~~gR~ 132 (138)
..+ .+..+.+-+.+|+=+..|.-..-+-..|.+
T Consensus 82 t~~~~~~~p~~~~~yd~II~DEcH~~Dp~sIA~rg~l 118 (148)
T PF07652_consen 82 TYGHFLLNPCRLKNYDVIIMDECHFTDPTSIAARGYL 118 (148)
T ss_dssp HHHHHHHTSSCTTS-SEEEECTTT--SHHHHHHHHHH
T ss_pred HHHHHhcCcccccCccEEEEeccccCCHHHHhhheeH
Confidence 433 355566666666667777544444444444
No 212
>cd03027 GRX_DEP Glutaredoxin (GRX) family, Dishevelled, Egl-10, and Pleckstrin (DEP) subfamily; composed of uncharacterized proteins containing a GRX domain and additional domains DEP and DUF547, both of which have unknown functions. GRX is a glutathione (GSH) dependent reductase containing a redox active CXXC motif in a TRX fold. It has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. By altering the redox state of target proteins, GRX is involved in many cellular functions.
Probab=81.63 E-value=7 Score=21.67 Aligned_cols=44 Identities=16% Similarity=0.218 Sum_probs=31.3
Q ss_pred eEEEEecc-HHHHHHHHHHHhhcCCeEEEEeCCCChHHHHHHHHH
Q psy2046 41 RVLIFSQF-IFVLDILGHYMDIRGWRHLRLDGATQVSSRQELIDE 84 (138)
Q Consensus 41 k~iif~~~-~~~~~~l~~~l~~~g~~~~~i~g~~~~~~R~~~~~~ 84 (138)
++.+|+.. .........+|.+.|+++..++=......+.+..+.
T Consensus 2 ~v~ly~~~~C~~C~ka~~~L~~~gi~~~~~di~~~~~~~~el~~~ 46 (73)
T cd03027 2 RVTIYSRLGCEDCTAVRLFLREKGLPYVEINIDIFPERKAELEER 46 (73)
T ss_pred EEEEEecCCChhHHHHHHHHHHCCCceEEEECCCCHHHHHHHHHH
Confidence 56666654 466888999999999999888776655555554443
No 213
>cd01534 4RHOD_Repeat_3 Member of the Rhodanese Homology Domain superfamily, repeat 3. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 3rd repeat which does not contain the putative catalytic Cys residue.
Probab=81.43 E-value=3 Score=24.45 Aligned_cols=36 Identities=19% Similarity=0.408 Sum_probs=27.7
Q ss_pred CCeEEEEeccHHHHHHHHHHHhhcCCeEEEEeCCCC
Q psy2046 39 GHRVLIFSQFIFVLDILGHYMDIRGWRHLRLDGATQ 74 (138)
Q Consensus 39 ~~k~iif~~~~~~~~~l~~~l~~~g~~~~~i~g~~~ 74 (138)
+.++++||..-.........|...|+++..+.|++.
T Consensus 56 ~~~iv~~c~~G~rs~~aa~~L~~~G~~v~~l~GG~~ 91 (95)
T cd01534 56 GARIVLADDDGVRADMTASWLAQMGWEVYVLEGGLA 91 (95)
T ss_pred CCeEEEECCCCChHHHHHHHHHHcCCEEEEecCcHH
Confidence 568999998766666777788888999666788763
No 214
>cd01528 RHOD_2 Member of the Rhodanese Homology Domain superfamily, subgroup 2. Subgroup 2 includes uncharacterized putative rhodanese-related domains.
Probab=81.14 E-value=7 Score=23.12 Aligned_cols=37 Identities=8% Similarity=0.170 Sum_probs=28.3
Q ss_pred CCCeEEEEeccHHHHHHHHHHHhhcCCe-EEEEeCCCC
Q psy2046 38 NGHRVLIFSQFIFVLDILGHYMDIRGWR-HLRLDGATQ 74 (138)
Q Consensus 38 ~~~k~iif~~~~~~~~~l~~~l~~~g~~-~~~i~g~~~ 74 (138)
.+.+++++|+.-.........|.+.|+. +..+.|++.
T Consensus 57 ~~~~vv~~c~~g~rs~~~~~~l~~~G~~~v~~l~GG~~ 94 (101)
T cd01528 57 PDKDIVVLCHHGGRSMQVAQWLLRQGFENVYNLQGGID 94 (101)
T ss_pred CCCeEEEEeCCCchHHHHHHHHHHcCCccEEEecCCHH
Confidence 3668999998876667777788888885 667888764
No 215
>COG1435 Tdk Thymidine kinase [Nucleotide transport and metabolism]
Probab=81.08 E-value=5 Score=27.57 Aligned_cols=34 Identities=29% Similarity=0.287 Sum_probs=29.7
Q ss_pred cccCchHHHHHHHHHHhhhCCCeEEEEeccHHHH
Q psy2046 19 VVESGKLKKLDEILPDLKKNGHRVLIFSQFIFVL 52 (138)
Q Consensus 19 ~~~s~K~~~l~~ll~~~~~~~~k~iif~~~~~~~ 52 (138)
.+.|+|-..|+..+......+.+++||.+-.++-
T Consensus 12 pM~SGKT~eLl~r~~~~~~~g~~v~vfkp~iD~R 45 (201)
T COG1435 12 PMFSGKTEELLRRARRYKEAGMKVLVFKPAIDTR 45 (201)
T ss_pred cCcCcchHHHHHHHHHHHHcCCeEEEEecccccc
Confidence 5679999999999999889999999999877653
No 216
>smart00450 RHOD Rhodanese Homology Domain. An alpha beta fold found duplicated in the Rhodanese protein. The the Cysteine containing enzymatically active version of the domain is also found in the CDC25 class of protein phosphatases and a variety of proteins such as sulfide dehydrogenases and stress proteins such as Senesence specific protein 1 in plants, PspE and GlpE in bacteria and cyanide and arsenate resistance proteins. Inactive versions with a loss of the cysteine are also seen in Dual specificity phosphatases, ubiquitin hydrolases from yeast and in sulfuryltransferases. These are likely to play a role in protein interactions.
Probab=80.36 E-value=3.3 Score=23.80 Aligned_cols=38 Identities=13% Similarity=0.172 Sum_probs=30.7
Q ss_pred hCCCeEEEEeccHHHHHHHHHHHhhcCCe-EEEEeCCCC
Q psy2046 37 KNGHRVLIFSQFIFVLDILGHYMDIRGWR-HLRLDGATQ 74 (138)
Q Consensus 37 ~~~~k~iif~~~~~~~~~l~~~l~~~g~~-~~~i~g~~~ 74 (138)
..+.++|+||............|...|++ +..+.|+..
T Consensus 54 ~~~~~iv~~c~~g~~a~~~~~~l~~~G~~~v~~l~GG~~ 92 (100)
T smart00450 54 DKDKPVVVYCRSGNRSAKAAWLLRELGFKNVYLLDGGYK 92 (100)
T ss_pred CCCCeEEEEeCCCcHHHHHHHHHHHcCCCceEEecCCHH
Confidence 34678999998877778888999999988 777888764
No 217
>cd01520 RHOD_YbbB Member of the Rhodanese Homology Domain superfamily. This CD includes several putative ATP /GTP binding proteins including E. coli YbbB.
Probab=80.27 E-value=7.3 Score=24.34 Aligned_cols=38 Identities=16% Similarity=0.208 Sum_probs=28.2
Q ss_pred hCCCeEEEEecc-HHHHHHHHHHHhhcCCeEEEEeCCCC
Q psy2046 37 KNGHRVLIFSQF-IFVLDILGHYMDIRGWRHLRLDGATQ 74 (138)
Q Consensus 37 ~~~~k~iif~~~-~~~~~~l~~~l~~~g~~~~~i~g~~~ 74 (138)
.+++++++||+. -.........|+..|+++..+.|+.+
T Consensus 84 ~~~~~vvvyC~~~G~rs~~a~~~L~~~G~~v~~L~GG~~ 122 (128)
T cd01520 84 ERDPKLLIYCARGGMRSQSLAWLLESLGIDVPLLEGGYK 122 (128)
T ss_pred CCCCeEEEEeCCCCccHHHHHHHHHHcCCceeEeCCcHH
Confidence 456789999963 34455666777888999888999875
No 218
>PRK09401 reverse gyrase; Reviewed
Probab=80.06 E-value=34 Score=30.11 Aligned_cols=95 Identities=12% Similarity=0.069 Sum_probs=58.0
Q ss_pred ccCchHHHHHHHHHHhhhCCCeEEEEeccHHHHHHHHHHHhhc----CCeEEEEeCC--CChHHHHHHHHHHhcCCCceE
Q psy2046 20 VESGKLKKLDEILPDLKKNGHRVLIFSQFIFVLDILGHYMDIR----GWRHLRLDGA--TQVSSRQELIDEYNRDQDLFA 93 (138)
Q Consensus 20 ~~s~K~~~l~~ll~~~~~~~~k~iif~~~~~~~~~l~~~l~~~----g~~~~~i~g~--~~~~~R~~~~~~F~~~~~~~v 93 (138)
.-++|...+.-++..+...+.+++|.+++..-+..+.+.++.. ++.+..+.|+ .+.+++.+..+.++.+. ..+
T Consensus 104 TGsGKT~f~l~~~~~l~~~g~~alIL~PTreLa~Qi~~~l~~l~~~~~~~~~~~~g~~~~~~~ek~~~~~~l~~~~-~~I 182 (1176)
T PRK09401 104 TGVGKTTFGLVMSLYLAKKGKKSYIIFPTRLLVEQVVEKLEKFGEKVGCGVKILYYHSSLKKKEKEEFLERLKEGD-FDI 182 (1176)
T ss_pred CCCCHHHHHHHHHHHHHhcCCeEEEEeccHHHHHHHHHHHHHHhhhcCceEEEEEccCCcchhHHHHHHHHHhcCC-CCE
Confidence 3467886554444444556789999999998887777777654 4455445443 45677888888887553 345
Q ss_pred EEEecccccc---ccCcCccCEEEE
Q psy2046 94 FLLSTKAGGL---GINLTAADTVII 115 (138)
Q Consensus 94 ll~~~~~~~~---Gl~l~~~~~vi~ 115 (138)
+++++..... .+.....+.+|+
T Consensus 183 lV~Tp~rL~~~~~~l~~~~~~~lVv 207 (1176)
T PRK09401 183 LVTTSQFLSKNFDELPKKKFDFVFV 207 (1176)
T ss_pred EEECHHHHHHHHHhccccccCEEEE
Confidence 6655543332 233333555554
No 219
>cd01529 4RHOD_Repeats Member of the Rhodanese Homology Domain superfamily. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. Only the second and most of the fourth repeats contain the putative catalytic Cys residue. This CD aligns the 1st , 2nd, 3rd, and 4th repeats.
Probab=79.88 E-value=5.1 Score=23.46 Aligned_cols=38 Identities=16% Similarity=0.131 Sum_probs=28.7
Q ss_pred hCCCeEEEEeccHHHHHHHHHHHhhcCCe-EEEEeCCCC
Q psy2046 37 KNGHRVLIFSQFIFVLDILGHYMDIRGWR-HLRLDGATQ 74 (138)
Q Consensus 37 ~~~~k~iif~~~~~~~~~l~~~l~~~g~~-~~~i~g~~~ 74 (138)
..++++|++|............|+..|++ +..+.|++.
T Consensus 54 ~~~~~ivv~c~~g~~s~~~~~~l~~~G~~~v~~l~GG~~ 92 (96)
T cd01529 54 GRATRYVLTCDGSLLARFAAQELLALGGKPVALLDGGTS 92 (96)
T ss_pred CCCCCEEEEeCChHHHHHHHHHHHHcCCCCEEEeCCCHH
Confidence 44678999998877677777888888884 677787763
No 220
>COG2247 LytB Putative cell wall-binding domain [Cell envelope biogenesis, outer membrane]
Probab=79.38 E-value=10 Score=28.13 Aligned_cols=60 Identities=17% Similarity=0.171 Sum_probs=48.5
Q ss_pred CCCeEEEEeccHHHHHHHHHHHhhcCCeEEEEeCCCChHHHHHHHHHHhc-----CCCceEEEEe
Q psy2046 38 NGHRVLIFSQFIFVLDILGHYMDIRGWRHLRLDGATQVSSRQELIDEYNR-----DQDLFAFLLS 97 (138)
Q Consensus 38 ~~~k~iif~~~~~~~~~l~~~l~~~g~~~~~i~g~~~~~~R~~~~~~F~~-----~~~~~vll~~ 97 (138)
+.+++||.-..+......+..|+..|+++..+-|+.-.+.-+++...|++ -+...+++++
T Consensus 75 npd~VLIIGGp~AVs~~yE~~Lks~GitV~RigG~nR~ETa~~v~~~~~~~yp~af~n~kvvvv~ 139 (337)
T COG2247 75 NPDLVLIIGGPIAVSPNYENALKSLGITVKRIGGANRYETAEKVAKFFREDYPNAFKNVKVVVVY 139 (337)
T ss_pred CCceEEEECCCCcCChhHHHHHHhCCcEEEEecCcchHHHHHHHHHHHHhhchhhhcCeEEEEEe
Confidence 56799999999999999999999999999999999877777788888862 2334555554
No 221
>PRK01122 potassium-transporting ATPase subunit B; Provisional
Probab=79.38 E-value=32 Score=28.37 Aligned_cols=61 Identities=10% Similarity=0.117 Sum_probs=40.9
Q ss_pred HHHHHhhhCCCeEEEEecc-------------HHHHHHHHHHHhhcCCeEEEEeCC--------------------CChH
Q psy2046 30 EILPDLKKNGHRVLIFSQF-------------IFVLDILGHYMDIRGWRHLRLDGA--------------------TQVS 76 (138)
Q Consensus 30 ~ll~~~~~~~~k~iif~~~-------------~~~~~~l~~~l~~~g~~~~~i~g~--------------------~~~~ 76 (138)
+.+.++.++|.+++.++.. +......-+.|++.|+++.+++|+ .+++
T Consensus 415 ~~~~~~a~~G~~~l~va~~~~~lG~i~l~D~~R~~~~eai~~Lr~~GI~vvMiTGDn~~TA~aIA~elGId~v~A~~~Pe 494 (679)
T PRK01122 415 AAVDEVARKGGTPLVVAEDNRVLGVIYLKDIVKPGIKERFAELRKMGIKTVMITGDNPLTAAAIAAEAGVDDFLAEATPE 494 (679)
T ss_pred HHHHHHHhCCCcEEEEEECCeEEEEEEEeccCchhHHHHHHHHHHCCCeEEEECCCCHHHHHHHHHHcCCcEEEccCCHH
Confidence 3444455566666666532 234455556778888887776665 7889
Q ss_pred HHHHHHHHHhcCCC
Q psy2046 77 SRQELIDEYNRDQD 90 (138)
Q Consensus 77 ~R~~~~~~F~~~~~ 90 (138)
++.++++++++...
T Consensus 495 dK~~iV~~lQ~~G~ 508 (679)
T PRK01122 495 DKLALIRQEQAEGR 508 (679)
T ss_pred HHHHHHHHHHHcCC
Confidence 99999999986543
No 222
>cd00268 DEADc DEAD-box helicases. A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif (motif II). This domain contains the ATP- binding region.
Probab=79.17 E-value=16 Score=24.37 Aligned_cols=95 Identities=16% Similarity=0.202 Sum_probs=53.9
Q ss_pred ccCchHHH-HHHHHHHhhh----CCCeEEEEeccHHHHHHHHHHHhh----cCCeEEEEeCCCChHHHHHHHHHHhcCCC
Q psy2046 20 VESGKLKK-LDEILPDLKK----NGHRVLIFSQFIFVLDILGHYMDI----RGWRHLRLDGATQVSSRQELIDEYNRDQD 90 (138)
Q Consensus 20 ~~s~K~~~-l~~ll~~~~~----~~~k~iif~~~~~~~~~l~~~l~~----~g~~~~~i~g~~~~~~R~~~~~~F~~~~~ 90 (138)
.-++|... +..++..+.. .+.+++|.++...-+......++. .++.+..++|+.+..+...... . .
T Consensus 45 TG~GKT~~~~~~~l~~~~~~~~~~~~~viii~p~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~--~ 119 (203)
T cd00268 45 TGSGKTAAFLIPILEKLDPSPKKDGPQALILAPTRELALQIAEVARKLGKHTNLKVVVIYGGTSIDKQIRKLK---R--G 119 (203)
T ss_pred CCCcHHHHHHHHHHHHHHhhcccCCceEEEEcCCHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHhc---C--C
Confidence 34677543 4555555543 356899999988776655444433 4778889999888655543332 2 2
Q ss_pred ceEEEEecccc-----ccccCcCccCEEEEeCCC
Q psy2046 91 LFAFLLSTKAG-----GLGINLTAADTVIIHDVD 119 (138)
Q Consensus 91 ~~vll~~~~~~-----~~Gl~l~~~~~vi~~~~~ 119 (138)
..+++.++... ..-.++...+.+|+=+.+
T Consensus 120 ~~iiv~T~~~l~~~l~~~~~~~~~l~~lIvDE~h 153 (203)
T cd00268 120 PHIVVATPGRLLDLLERGKLDLSKVKYLVLDEAD 153 (203)
T ss_pred CCEEEEChHHHHHHHHcCCCChhhCCEEEEeChH
Confidence 33455553321 122455666666654333
No 223
>TIGR00376 DNA helicase, putative. The gene product may represent a DNA helicase. Eukaryotic members of this family have been characterized as binding certain single-stranded G-rich DNA sequences (GGGGT and GGGCT). A number of related proteins are characterized as helicases.
Probab=78.81 E-value=9.8 Score=30.91 Aligned_cols=51 Identities=27% Similarity=0.363 Sum_probs=43.7
Q ss_pred CchHHHHHHHHHHhhhCCCeEEEEeccHHHHHHHHHHHhhcCCeEEEEeCC
Q psy2046 22 SGKLKKLDEILPDLKKNGHRVLIFSQFIFVLDILGHYMDIRGWRHLRLDGA 72 (138)
Q Consensus 22 s~K~~~l~~ll~~~~~~~~k~iif~~~~~~~~~l~~~l~~~g~~~~~i~g~ 72 (138)
.+|...+.+++..+...+.++++.+++...++.|.+.|...+.+++.+-..
T Consensus 184 TGKT~t~~~ii~~~~~~g~~VLv~a~sn~Avd~l~e~l~~~~~~vvRlg~~ 234 (637)
T TIGR00376 184 TGKTRTLVELIRQLVKRGLRVLVTAPSNIAVDNLLERLALCDQKIVRLGHP 234 (637)
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEcCcHHHHHHHHHHHHhCCCcEEEeCCc
Confidence 489999999998888888899999999999999999998877777666543
No 224
>cd01533 4RHOD_Repeat_2 Member of the Rhodanese Homology Domain superfamily, repeat 2. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 2nd repeat which does contain the putative catalytic Cys residue.
Probab=78.80 E-value=8.8 Score=23.07 Aligned_cols=36 Identities=14% Similarity=-0.081 Sum_probs=27.3
Q ss_pred CCeEEEEeccHHHHHHHHHHHhhcCCe--EEEEeCCCC
Q psy2046 39 GHRVLIFSQFIFVLDILGHYMDIRGWR--HLRLDGATQ 74 (138)
Q Consensus 39 ~~k~iif~~~~~~~~~l~~~l~~~g~~--~~~i~g~~~ 74 (138)
+..+++||..-.........|...|++ +..+.|+++
T Consensus 66 ~~~ivv~C~~G~rs~~a~~~L~~~G~~~~v~~l~gG~~ 103 (109)
T cd01533 66 RTPIVVNCAGRTRSIIGAQSLINAGLPNPVAALRNGTQ 103 (109)
T ss_pred CCeEEEECCCCchHHHHHHHHHHCCCCcceeEecCCHH
Confidence 568999997766556677888888984 677888874
No 225
>PRK13766 Hef nuclease; Provisional
Probab=78.70 E-value=36 Score=28.16 Aligned_cols=93 Identities=15% Similarity=0.189 Sum_probs=56.3
Q ss_pred cCchHHHHHHHHHHh-hhCCCeEEEEeccHHHHHHHHHHHhhc-C---CeEEEEeCCCChHHHHHHHHHHhcCCCceEEE
Q psy2046 21 ESGKLKKLDEILPDL-KKNGHRVLIFSQFIFVLDILGHYMDIR-G---WRHLRLDGATQVSSRQELIDEYNRDQDLFAFL 95 (138)
Q Consensus 21 ~s~K~~~l~~ll~~~-~~~~~k~iif~~~~~~~~~l~~~l~~~-g---~~~~~i~g~~~~~~R~~~~~~F~~~~~~~vll 95 (138)
-++|.....-++... ...+.++|+.++...-.....+.++.. + .++..++|..+..+|.+... . ..+++
T Consensus 39 G~GKT~~a~~~i~~~l~~~~~~vLvl~Pt~~L~~Q~~~~~~~~~~~~~~~v~~~~g~~~~~~r~~~~~---~---~~iiv 112 (773)
T PRK13766 39 GLGKTAIALLVIAERLHKKGGKVLILAPTKPLVEQHAEFFRKFLNIPEEKIVVFTGEVSPEKRAELWE---K---AKVIV 112 (773)
T ss_pred CccHHHHHHHHHHHHHHhCCCeEEEEeCcHHHHHHHHHHHHHHhCCCCceEEEEeCCCCHHHHHHHHh---C---CCEEE
Confidence 356776444343332 345679999999987776665555543 3 37888999998887765443 2 23566
Q ss_pred Eeccccc-----cccCcCccCEEEEeCCC
Q psy2046 96 LSTKAGG-----LGINLTAADTVIIHDVD 119 (138)
Q Consensus 96 ~~~~~~~-----~Gl~l~~~~~vi~~~~~ 119 (138)
+++.... .-+++...+.+|+-+.+
T Consensus 113 ~T~~~l~~~l~~~~~~~~~~~liVvDEaH 141 (773)
T PRK13766 113 ATPQVIENDLIAGRISLEDVSLLIFDEAH 141 (773)
T ss_pred ECHHHHHHHHHcCCCChhhCcEEEEECCc
Confidence 6655432 23345566666665544
No 226
>COG0608 RecJ Single-stranded DNA-specific exonuclease [DNA replication, recombination, and repair]
Probab=78.41 E-value=18 Score=28.35 Aligned_cols=93 Identities=14% Similarity=0.188 Sum_probs=54.5
Q ss_pred chHHHHHHHHHHhhhCCCeEEEEeccHHH----HHHHHHHHhhcCCeEEE-EeCCCChHHHHHHHHHHhcCCCceEEEEe
Q psy2046 23 GKLKKLDEILPDLKKNGHRVLIFSQFIFV----LDILGHYMDIRGWRHLR-LDGATQVSSRQELIDEYNRDQDLFAFLLS 97 (138)
Q Consensus 23 ~K~~~l~~ll~~~~~~~~k~iif~~~~~~----~~~l~~~l~~~g~~~~~-i~g~~~~~~R~~~~~~F~~~~~~~vll~~ 97 (138)
.++....+.+.+..+++++++||+++..+ .-.+...|+..|..+.. +-.+.....= +++........ +++.
T Consensus 20 ~~~~~a~~~i~~ai~~~~~I~I~~d~DaDGitS~ail~~~L~~~g~~~~~~ip~~~~~~~g--~~~~~~~~~~~--liIt 95 (491)
T COG0608 20 KDMEKAAARIAEAIEKGEKILIYGDYDADGITSAAILAKALRRLGADVDYYIPNRFEEGYG--AIRKLKEEGAD--LIIT 95 (491)
T ss_pred hhHHHHHHHHHHHHHcCCEEEEEEecCcccHHHHHHHHHHHHHcCCceEEEeCCCccccch--HHHHHHhcCCC--EEEE
Confidence 45666677777777889999999999844 66788888888866433 2222222111 34433333333 5556
Q ss_pred ccccccccCcCcc-----CEEEEeCCC
Q psy2046 98 TKAGGLGINLTAA-----DTVIIHDVD 119 (138)
Q Consensus 98 ~~~~~~Gl~l~~~-----~~vi~~~~~ 119 (138)
.+.+.-.++-... -.||..|.+
T Consensus 96 vD~G~~~~~~i~~~~~~g~~vIVtDHH 122 (491)
T COG0608 96 VDNGSGSLEEIARAKELGIDVIVTDHH 122 (491)
T ss_pred ECCCcccHHHHHHHHhCCCcEEEECCC
Confidence 6666655543321 345555555
No 227
>PF11019 DUF2608: Protein of unknown function (DUF2608); InterPro: IPR022565 This family is conserved in Bacteria. The function is not known.
Probab=78.20 E-value=13 Score=26.51 Aligned_cols=53 Identities=9% Similarity=0.108 Sum_probs=41.2
Q ss_pred ccccCchHHHHHHHHHHhhhCCCeEEEEeccHHHHHHHHHHHhhcCCeEEEEe
Q psy2046 18 LVVESGKLKKLDEILPDLKKNGHRVLIFSQFIFVLDILGHYMDIRGWRHLRLD 70 (138)
Q Consensus 18 ~~~~s~K~~~l~~ll~~~~~~~~k~iif~~~~~~~~~l~~~l~~~g~~~~~i~ 70 (138)
+.....|=..|..++..+....+++|...+..+.+..+.++++..|+.+.-+|
T Consensus 157 ft~~~~KG~~L~~fL~~~~~~pk~IIfIDD~~~nl~sv~~a~k~~~I~f~G~~ 209 (252)
T PF11019_consen 157 FTGGQDKGEVLKYFLDKINQSPKKIIFIDDNKENLKSVEKACKKSGIDFIGFH 209 (252)
T ss_pred EeCCCccHHHHHHHHHHcCCCCCeEEEEeCCHHHHHHHHHHHhhCCCcEEEEE
Confidence 34455788888888887666667777777888889999999999999876544
No 228
>COG0610 Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=77.70 E-value=5.8 Score=33.82 Aligned_cols=57 Identities=23% Similarity=0.300 Sum_probs=40.4
Q ss_pred HHHHHHHHH-hcCCCceEEEEeccccccccCcCccCEEEEeCCCCCccchhHHHHHHhhc
Q psy2046 77 SRQELIDEY-NRDQDLFAFLLSTKAGGLGINLTAADTVIIHDVDFNPYNDKQAEDRCHRV 135 (138)
Q Consensus 77 ~R~~~~~~F-~~~~~~~vll~~~~~~~~Gl~l~~~~~vi~~~~~~~~~~~~Q~~gR~~R~ 135 (138)
.+.....+| .......+|++ ++-.-+|.|-|..+++.+ |-|.-.-...||+.|+-|+
T Consensus 579 ~~~~~~~r~~~~~d~~kilIV-~dmlLTGFDaP~L~TmYv-DK~Lk~H~L~QAisRtNR~ 636 (962)
T COG0610 579 EKKDLIKRFKLKDDPLDLLIV-VDMLLTGFDAPCLNTLYV-DKPLKYHNLIQAISRTNRV 636 (962)
T ss_pred HHhhhhhhhcCcCCCCCEEEE-EccccccCCccccceEEe-ccccccchHHHHHHHhccC
Confidence 444455555 34445555555 488899999997776655 6667677788999999985
No 229
>COG2927 HolC DNA polymerase III, chi subunit [DNA replication, recombination, and repair]
Probab=77.44 E-value=11 Score=24.53 Aligned_cols=34 Identities=18% Similarity=0.069 Sum_probs=30.9
Q ss_pred HHHHHHHHhhhCCCeEEEEeccHHHHHHHHHHHh
Q psy2046 27 KLDEILPDLKKNGHRVLIFSQFIFVLDILGHYMD 60 (138)
Q Consensus 27 ~l~~ll~~~~~~~~k~iif~~~~~~~~~l~~~l~ 60 (138)
.++.++......|.|++|-|....-.++|-+.|=
T Consensus 17 ~~c~L~~k~~~~G~rvlI~~~d~~q~e~LD~~LW 50 (144)
T COG2927 17 AACRLAEKAWRSGWRVLIQCEDEAQAEALDEHLW 50 (144)
T ss_pred HHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHhhh
Confidence 8899999989999999999999998999888883
No 230
>PRK06381 threonine synthase; Validated
Probab=77.08 E-value=26 Score=25.61 Aligned_cols=66 Identities=9% Similarity=0.059 Sum_probs=52.8
Q ss_pred ccCchHHHHHHHHHHhhhCCCeEEEEeccHHHHHHHHHHHhhcCCeEEEEeCCCChHHHHHHHHHH
Q psy2046 20 VESGKLKKLDEILPDLKKNGHRVLIFSQFIFVLDILGHYMDIRGWRHLRLDGATQVSSRQELIDEY 85 (138)
Q Consensus 20 ~~s~K~~~l~~ll~~~~~~~~k~iif~~~~~~~~~l~~~l~~~g~~~~~i~g~~~~~~R~~~~~~F 85 (138)
.-|-|.+.+..++.+..+.+.+.||=+.+-+..-.++.+-...|+++..+-.......+.+.++.|
T Consensus 43 tGS~K~R~a~~~l~~a~~~g~~~lv~aSsGN~g~alA~~aa~~G~~~~ivvp~~~~~~~~~~l~~~ 108 (319)
T PRK06381 43 TGTQKDRIAEAHVRRAMRLGYSGITVGTCGNYGASIAYFARLYGLKAVIFIPRSYSNSRVKEMEKY 108 (319)
T ss_pred ccCcHHHHHHHHHHHHHHcCCCEEEEeCCcHHHHHHHHHHHHcCCcEEEEECCCCCHHHHHHHHHc
Confidence 457899999999988888887777766677888888888888899988777766667777788877
No 231
>PRK04537 ATP-dependent RNA helicase RhlB; Provisional
Probab=77.04 E-value=36 Score=27.28 Aligned_cols=71 Identities=14% Similarity=0.124 Sum_probs=45.9
Q ss_pred CeEEEEeccHHHHHHHHHHHhh----cCCeEEEEeCCCChHHHHHHHHHHhcCCCceEEEEeccccc------cccCcCc
Q psy2046 40 HRVLIFSQFIFVLDILGHYMDI----RGWRHLRLDGATQVSSRQELIDEYNRDQDLFAFLLSTKAGG------LGINLTA 109 (138)
Q Consensus 40 ~k~iif~~~~~~~~~l~~~l~~----~g~~~~~i~g~~~~~~R~~~~~~F~~~~~~~vll~~~~~~~------~Gl~l~~ 109 (138)
.++||.+++.+-+..+.+.+.. .++.+..++|+.+.....+.+. . ...+++.++...- ..+++..
T Consensus 85 ~raLIl~PTreLa~Qi~~~~~~l~~~~~i~v~~l~Gg~~~~~q~~~l~---~--~~dIiV~TP~rL~~~l~~~~~~~l~~ 159 (572)
T PRK04537 85 PRALILAPTRELAIQIHKDAVKFGADLGLRFALVYGGVDYDKQRELLQ---Q--GVDVIIATPGRLIDYVKQHKVVSLHA 159 (572)
T ss_pred ceEEEEeCcHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHHh---C--CCCEEEECHHHHHHHHHhccccchhh
Confidence 5899999999887766665544 4678899999988766555543 2 2345665543321 1355666
Q ss_pred cCEEEE
Q psy2046 110 ADTVII 115 (138)
Q Consensus 110 ~~~vi~ 115 (138)
...+|+
T Consensus 160 v~~lVi 165 (572)
T PRK04537 160 CEICVL 165 (572)
T ss_pred eeeeEe
Confidence 666655
No 232
>PRK13958 N-(5'-phosphoribosyl)anthranilate isomerase; Provisional
Probab=76.84 E-value=15 Score=25.29 Aligned_cols=51 Identities=10% Similarity=0.209 Sum_probs=35.5
Q ss_pred HHHHHHHHHhhhCCCeEEEEeccHHHHHHHHHHHhhcCCeEEEEeCCCChHHH
Q psy2046 26 KKLDEILPDLKKNGHRVLIFSQFIFVLDILGHYMDIRGWRHLRLDGATQVSSR 78 (138)
Q Consensus 26 ~~l~~ll~~~~~~~~k~iif~~~~~~~~~l~~~l~~~g~~~~~i~g~~~~~~R 78 (138)
....++...+...-++|-||++. ..+.+.+.+...++.++.+||..+++.-
T Consensus 40 ~~a~~i~~~~~~~~~~VgVf~~~--~~~~i~~~~~~~~~d~vQLHG~e~~~~~ 90 (207)
T PRK13958 40 TQIKKLASAVPNHIDKVCVVVNP--DLTTIEHILSNTSINTIQLHGTESIDFI 90 (207)
T ss_pred HHHHHHHHhCCCCCCEEEEEeCC--CHHHHHHHHHhCCCCEEEECCCCCHHHH
Confidence 34444444433334689999864 5577888888889999999998876543
No 233
>PRK10638 glutaredoxin 3; Provisional
Probab=76.57 E-value=12 Score=21.38 Aligned_cols=43 Identities=14% Similarity=0.171 Sum_probs=30.5
Q ss_pred eEEEEe-ccHHHHHHHHHHHhhcCCeEEEEeCCCChHHHHHHHH
Q psy2046 41 RVLIFS-QFIFVLDILGHYMDIRGWRHLRLDGATQVSSRQELID 83 (138)
Q Consensus 41 k~iif~-~~~~~~~~l~~~l~~~g~~~~~i~g~~~~~~R~~~~~ 83 (138)
++.+|+ ........+..+|.+.|++|..++=......+....+
T Consensus 3 ~v~ly~~~~Cp~C~~a~~~L~~~gi~y~~~dv~~~~~~~~~l~~ 46 (83)
T PRK10638 3 NVEIYTKATCPFCHRAKALLNSKGVSFQEIPIDGDAAKREEMIK 46 (83)
T ss_pred cEEEEECCCChhHHHHHHHHHHcCCCcEEEECCCCHHHHHHHHH
Confidence 566777 3446688899999999999988876665545544433
No 234
>PRK11057 ATP-dependent DNA helicase RecQ; Provisional
Probab=76.56 E-value=38 Score=27.38 Aligned_cols=61 Identities=11% Similarity=0.117 Sum_probs=47.5
Q ss_pred CCeEEEEeccHHHHHHHHHHHhhcCCeEEEEeCCCChHHHHHHHHHHhcCCCceEEEEeccc
Q psy2046 39 GHRVLIFSQFIFVLDILGHYMDIRGWRHLRLDGATQVSSRQELIDEYNRDQDLFAFLLSTKA 100 (138)
Q Consensus 39 ~~k~iif~~~~~~~~~l~~~l~~~g~~~~~i~g~~~~~~R~~~~~~F~~~~~~~vll~~~~~ 100 (138)
+..+||.++.+.-.....+.|...|+.+..+++..+..++..++.....+. ..++++++..
T Consensus 65 ~g~tlVisPl~sL~~dqv~~l~~~gi~~~~~~s~~~~~~~~~~~~~~~~g~-~~il~~tPe~ 125 (607)
T PRK11057 65 DGLTLVVSPLISLMKDQVDQLLANGVAAACLNSTQTREQQLEVMAGCRTGQ-IKLLYIAPER 125 (607)
T ss_pred CCCEEEEecHHHHHHHHHHHHHHcCCcEEEEcCCCCHHHHHHHHHHHhCCC-CcEEEEChHH
Confidence 347899999988877777788888999999999999888888888776653 4556666544
No 235
>TIGR01138 cysM cysteine synthase B. Alternate name: O-acetylserine (thiol)-lyase
Probab=76.32 E-value=26 Score=25.32 Aligned_cols=66 Identities=20% Similarity=0.153 Sum_probs=53.1
Q ss_pred ccCchHHHHHHHHHHhhhCCC----eEEEEeccHHHHHHHHHHHhhcCCeEEEEeCCCChHHHHHHHHHH
Q psy2046 20 VESGKLKKLDEILPDLKKNGH----RVLIFSQFIFVLDILGHYMDIRGWRHLRLDGATQVSSRQELIDEY 85 (138)
Q Consensus 20 ~~s~K~~~l~~ll~~~~~~~~----k~iif~~~~~~~~~l~~~l~~~g~~~~~i~g~~~~~~R~~~~~~F 85 (138)
.-|-|.+....++....+.+. +.||-+..-+....++-+-+..|+++..+-.......+.+.++.|
T Consensus 35 tGS~K~R~a~~~v~~a~~~g~~~~g~~vv~aSsGN~g~alA~~a~~~G~~~~i~~p~~~~~~k~~~~~~~ 104 (290)
T TIGR01138 35 AGSVKDRPALSMIVEAEKRGEIKPGDVLIEATSGNTGIALAMIAALKGYRMKLLMPDNMSQERKAAMRAY 104 (290)
T ss_pred CccHHHHHHHHHHHHHHHcCCCCCCCEEEEECCChHHHHHHHHHHHcCCeEEEEECCCCCHHHHHHHHHc
Confidence 357798888888887666654 556777777888889998889999998888877777888889988
No 236
>cd00158 RHOD Rhodanese Homology Domain (RHOD); an alpha beta fold domain found duplicated in the rhodanese protein. The cysteine containing enzymatically active version of the domain is also found in the Cdc25 class of protein phosphatases and a variety of proteins such as sulfide dehydrogenases and certain stress proteins such as senesence specific protein 1 in plants, PspE and GlpE in bacteria and cyanide and arsenate resistance proteins. Inactive versions (no active site cysteine) are also seen in dual specificity phosphatases, ubiquitin hydrolases from yeast and in sulfuryltransferases, where they are believed to play a regulatory role in multidomain proteins.
Probab=76.22 E-value=7.4 Score=21.91 Aligned_cols=38 Identities=8% Similarity=0.095 Sum_probs=28.7
Q ss_pred hCCCeEEEEeccHHHHHHHHHHHhhcCCe-EEEEeCCCC
Q psy2046 37 KNGHRVLIFSQFIFVLDILGHYMDIRGWR-HLRLDGATQ 74 (138)
Q Consensus 37 ~~~~k~iif~~~~~~~~~l~~~l~~~g~~-~~~i~g~~~ 74 (138)
..+.++|++|............|...|+. +..+.|+..
T Consensus 48 ~~~~~vv~~c~~~~~a~~~~~~l~~~G~~~v~~l~gG~~ 86 (89)
T cd00158 48 DKDKPIVVYCRSGNRSARAAKLLRKAGGTNVYNLEGGML 86 (89)
T ss_pred CCCCeEEEEeCCCchHHHHHHHHHHhCcccEEEecCChh
Confidence 45678999998877778888899888765 556777653
No 237
>PF09419 PGP_phosphatase: Mitochondrial PGP phosphatase; InterPro: IPR010021 This group of hypothetical proteins is a part of the IIIA subfamily of the haloacid dehalogenase (HAD) superfamily of hydrolases. All characterised members of this subfamily and most characterised members of the HAD superfamily are phosphatases. HAD superfamily phosphatases contain active site residues in several conserved catalytic motifs [], all of which are found conserved here. This family consists of sequences from fungi, plants, cyanobacteria, Gram-positive bacteria and Deinococcus. There is presently no characterisation of any sequence in this family.
Probab=76.19 E-value=20 Score=23.93 Aligned_cols=58 Identities=26% Similarity=0.261 Sum_probs=35.9
Q ss_pred HHHHHHHHhhhCC--CeEEEEeccH--------HHHHHHHHHHhhcCCeEEEEeCCCChHHHHHHHHHHhcC
Q psy2046 27 KLDEILPDLKKNG--HRVLIFSQFI--------FVLDILGHYMDIRGWRHLRLDGATQVSSRQELIDEYNRD 88 (138)
Q Consensus 27 ~l~~ll~~~~~~~--~k~iif~~~~--------~~~~~l~~~l~~~g~~~~~i~g~~~~~~R~~~~~~F~~~ 88 (138)
.+.+.+.++.+.+ ++++|+|++. ..+..+++.| |+++. .|+...+.-..++++-|+..
T Consensus 63 ~~~~~~~~l~~~~~~~~v~IvSNsaGs~~d~~~~~a~~~~~~l---gIpvl-~h~~kKP~~~~~i~~~~~~~ 130 (168)
T PF09419_consen 63 EYAEWLNELKKQFGKDRVLIVSNSAGSSDDPDGERAEALEKAL---GIPVL-RHRAKKPGCFREILKYFKCQ 130 (168)
T ss_pred HHHHHHHHHHHHCCCCeEEEEECCCCcccCccHHHHHHHHHhh---CCcEE-EeCCCCCccHHHHHHHHhhc
Confidence 3445555555443 3799999973 4455555554 56754 45555557777889988743
No 238
>COG4098 comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair]
Probab=76.04 E-value=9.6 Score=28.78 Aligned_cols=59 Identities=20% Similarity=0.055 Sum_probs=49.7
Q ss_pred ccccCchHHHHHHHHHHhhhCCCeEEEEeccHHHHHHHHHHHhhc--CCeEEEEeCCCChH
Q psy2046 18 LVVESGKLKKLDEILPDLKKNGHRVLIFSQFIFVLDILGHYMDIR--GWRHLRLDGATQVS 76 (138)
Q Consensus 18 ~~~~s~K~~~l~~ll~~~~~~~~k~iif~~~~~~~~~l~~~l~~~--g~~~~~i~g~~~~~ 76 (138)
-+.-++|.+.+.+.+....++|.++-|-++..+.+-.|...|+.. ++....+||+.++.
T Consensus 123 AV~GaGKTEMif~~i~~al~~G~~vciASPRvDVclEl~~Rlk~aF~~~~I~~Lyg~S~~~ 183 (441)
T COG4098 123 AVTGAGKTEMIFQGIEQALNQGGRVCIASPRVDVCLELYPRLKQAFSNCDIDLLYGDSDSY 183 (441)
T ss_pred EecCCCchhhhHHHHHHHHhcCCeEEEecCcccchHHHHHHHHHhhccCCeeeEecCCchh
Confidence 345678999999999988999999999999999988888888775 57788999987743
No 239
>cd01449 TST_Repeat_2 Thiosulfate sulfurtransferase (TST), C-terminal, catalytic domain. TST contains 2 copies of the Rhodanese Homology Domain; this is the second repeat. Only the second repeat contains the catalytically active Cys residue.
Probab=75.84 E-value=11 Score=22.77 Aligned_cols=47 Identities=15% Similarity=0.244 Sum_probs=32.5
Q ss_pred HHHHHHHHhh-hCCCeEEEEeccHHHHHHHHHHHhhcCCe-EEEEeCCC
Q psy2046 27 KLDEILPDLK-KNGHRVLIFSQFIFVLDILGHYMDIRGWR-HLRLDGAT 73 (138)
Q Consensus 27 ~l~~ll~~~~-~~~~k~iif~~~~~~~~~l~~~l~~~g~~-~~~i~g~~ 73 (138)
.+...+..+. ..++++|+||..-.........|...|++ +..+.|++
T Consensus 65 ~~~~~~~~~~~~~~~~iv~yc~~g~~s~~~~~~l~~~G~~~v~~l~GG~ 113 (118)
T cd01449 65 ELRALFAALGITPDKPVIVYCGSGVTACVLLLALELLGYKNVRLYDGSW 113 (118)
T ss_pred HHHHHHHHcCCCCCCCEEEECCcHHHHHHHHHHHHHcCCCCeeeeCChH
Confidence 3444444332 34678999998866677788888889985 66777765
No 240
>COG1205 Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only]
Probab=75.70 E-value=22 Score=30.08 Aligned_cols=79 Identities=20% Similarity=0.153 Sum_probs=53.8
Q ss_pred ccCchHHH-HHHHHHHhhhCC-CeEEEEeccHHH----HHHHHHHHhhcC--CeEEEEeCCCChHHHHHHHHHHhcCCCc
Q psy2046 20 VESGKLKK-LDEILPDLKKNG-HRVLIFSQFIFV----LDILGHYMDIRG--WRHLRLDGATQVSSRQELIDEYNRDQDL 91 (138)
Q Consensus 20 ~~s~K~~~-l~~ll~~~~~~~-~k~iif~~~~~~----~~~l~~~l~~~g--~~~~~i~g~~~~~~R~~~~~~F~~~~~~ 91 (138)
..|+|-.. +.-++..+.+.. .+.|++.+.+.- .+.+.+++...+ +.+..++|++++.+|..+++ + .+
T Consensus 94 TgSGKTe~FllPIld~~l~~~~a~AL~lYPtnALa~DQ~~rl~~~~~~~~~~v~~~~y~Gdt~~~~r~~~~~---~--pp 168 (851)
T COG1205 94 TGSGKTESFLLPILDHLLRDPSARALLLYPTNALANDQAERLRELISDLPGKVTFGRYTGDTPPEERRAIIR---N--PP 168 (851)
T ss_pred CCCchhHHHHHHHHHHHhhCcCccEEEEechhhhHhhHHHHHHHHHHhCCCcceeeeecCCCChHHHHHHHh---C--CC
Confidence 35778664 446666665543 467888887733 556777776666 88999999999998875444 2 33
Q ss_pred eEEEEecccccc
Q psy2046 92 FAFLLSTKAGGL 103 (138)
Q Consensus 92 ~vll~~~~~~~~ 103 (138)
.||+.+++..-.
T Consensus 169 ~IllTNpdMLh~ 180 (851)
T COG1205 169 DILLTNPDMLHY 180 (851)
T ss_pred CEEEeCHHHHHH
Confidence 568878776554
No 241
>cd01518 RHOD_YceA Member of the Rhodanese Homology Domain superfamily. This CD includes Escherichia coli YceA, Bacillus subtilis YbfQ, and similar uncharacterized proteins.
Probab=75.65 E-value=4.6 Score=23.92 Aligned_cols=38 Identities=21% Similarity=0.399 Sum_probs=28.0
Q ss_pred hCCCeEEEEeccHHHHHHHHHHHhhcCCe-EEEEeCCCC
Q psy2046 37 KNGHRVLIFSQFIFVLDILGHYMDIRGWR-HLRLDGATQ 74 (138)
Q Consensus 37 ~~~~k~iif~~~~~~~~~l~~~l~~~g~~-~~~i~g~~~ 74 (138)
..+.+++|+|..-.........|...|+. +..+.|++.
T Consensus 59 ~~~~~ivvyC~~G~rs~~a~~~L~~~G~~~v~~l~GG~~ 97 (101)
T cd01518 59 LKGKKVLMYCTGGIRCEKASAYLKERGFKNVYQLKGGIL 97 (101)
T ss_pred cCCCEEEEECCCchhHHHHHHHHHHhCCcceeeechhHH
Confidence 35668999998765566667788888985 667888653
No 242
>COG1111 MPH1 ERCC4-like helicases [DNA replication, recombination, and repair]
Probab=75.18 E-value=37 Score=26.96 Aligned_cols=91 Identities=18% Similarity=0.216 Sum_probs=57.0
Q ss_pred chHHHHHHHHH-HhhhCCCeEEEEeccHHHHHHHHHHHhh-cCCe---EEEEeCCCChHHHHHHHHHHhcCCCceEEEEe
Q psy2046 23 GKLKKLDEILP-DLKKNGHRVLIFSQFIFVLDILGHYMDI-RGWR---HLRLDGATQVSSRQELIDEYNRDQDLFAFLLS 97 (138)
Q Consensus 23 ~K~~~l~~ll~-~~~~~~~k~iif~~~~~~~~~l~~~l~~-~g~~---~~~i~g~~~~~~R~~~~~~F~~~~~~~vll~~ 97 (138)
+|.--..-++. .+...+.|+|+-++++--...-...+.+ .|++ .+.++|..++++|..... .+ +|++++
T Consensus 41 GKT~IA~~V~~~~l~~~~~kvlfLAPTKPLV~Qh~~~~~~v~~ip~~~i~~ltGev~p~~R~~~w~---~~---kVfvaT 114 (542)
T COG1111 41 GKTFIAAMVIANRLRWFGGKVLFLAPTKPLVLQHAEFCRKVTGIPEDEIAALTGEVRPEEREELWA---KK---KVFVAT 114 (542)
T ss_pred cHHHHHHHHHHHHHHhcCCeEEEecCCchHHHHHHHHHHHHhCCChhheeeecCCCChHHHHHHHh---hC---CEEEec
Confidence 45433333333 3444555899999988655544444433 4553 779999999999977654 23 457777
Q ss_pred ccccc-----cccCcCccCEEEEeCCC
Q psy2046 98 TKAGG-----LGINLTAADTVIIHDVD 119 (138)
Q Consensus 98 ~~~~~-----~Gl~l~~~~~vi~~~~~ 119 (138)
+++.. -=+|+.++.++|+=+.+
T Consensus 115 PQvveNDl~~Grid~~dv~~lifDEAH 141 (542)
T COG1111 115 PQVVENDLKAGRIDLDDVSLLIFDEAH 141 (542)
T ss_pred cHHHHhHHhcCccChHHceEEEechhh
Confidence 77633 33677788888775443
No 243
>PRK01222 N-(5'-phosphoribosyl)anthranilate isomerase; Provisional
Probab=75.15 E-value=19 Score=24.81 Aligned_cols=50 Identities=14% Similarity=0.076 Sum_probs=35.0
Q ss_pred HHHHHHHHhhhCCCeEEEEeccHHHHHHHHHHHhhcCCeEEEEeCCCChHHH
Q psy2046 27 KLDEILPDLKKNGHRVLIFSQFIFVLDILGHYMDIRGWRHLRLDGATQVSSR 78 (138)
Q Consensus 27 ~l~~ll~~~~~~~~k~iif~~~~~~~~~l~~~l~~~g~~~~~i~g~~~~~~R 78 (138)
.+.++.+.+...-.++.||.+. ..+.+.+.++..++.++.+||..+.+.-
T Consensus 43 ~a~~i~~~~~~~i~~VgVf~~~--~~~~i~~~~~~~~~d~vQLHg~e~~~~~ 92 (210)
T PRK01222 43 QAAELAAALPPFVKVVGVFVNA--SDEEIDEIVETVPLDLLQLHGDETPEFC 92 (210)
T ss_pred HHHHHHHhCCCCCCEEEEEeCC--CHHHHHHHHHhcCCCEEEECCCCCHHHH
Confidence 3444444333334689999874 4577888888889999999998776543
No 244
>cd01521 RHOD_PspE2 Member of the Rhodanese Homology Domain superfamily. This CD includes the putative rhodanese-like protein, Psp2, of Yersinia pestis biovar Medievalis and other similar uncharacterized proteins.
Probab=75.11 E-value=6.5 Score=23.78 Aligned_cols=38 Identities=5% Similarity=-0.045 Sum_probs=28.5
Q ss_pred hCCCeEEEEeccHH--HHHHHHHHHhhcCCeEEEEeCCCC
Q psy2046 37 KNGHRVLIFSQFIF--VLDILGHYMDIRGWRHLRLDGATQ 74 (138)
Q Consensus 37 ~~~~k~iif~~~~~--~~~~l~~~l~~~g~~~~~i~g~~~ 74 (138)
..+.++++||+... ........|...|+++..+.|++.
T Consensus 62 ~~~~~vvvyc~~g~~~~s~~~a~~l~~~G~~v~~l~GG~~ 101 (110)
T cd01521 62 DKEKLFVVYCDGPGCNGATKAALKLAELGFPVKEMIGGLD 101 (110)
T ss_pred CCCCeEEEEECCCCCchHHHHHHHHHHcCCeEEEecCCHH
Confidence 34678999998652 456677788888998778888763
No 245
>PRK09751 putative ATP-dependent helicase Lhr; Provisional
Probab=74.76 E-value=32 Score=31.07 Aligned_cols=74 Identities=19% Similarity=0.147 Sum_probs=49.0
Q ss_pred CCeEEEEeccHHHHHHHHHHHhh----------------cCCeEEEEeCCCChHHHHHHHHHHhcCCCceEEEEeccccc
Q psy2046 39 GHRVLIFSQFIFVLDILGHYMDI----------------RGWRHLRLDGATQVSSRQELIDEYNRDQDLFAFLLSTKAGG 102 (138)
Q Consensus 39 ~~k~iif~~~~~~~~~l~~~l~~----------------~g~~~~~i~g~~~~~~R~~~~~~F~~~~~~~vll~~~~~~~ 102 (138)
+-++|+.++.+.-...+...|+. .++.+...+|+++.++|.+.+++ . +.||+.++....
T Consensus 37 ~~raLYISPLKALa~Dv~~~L~~pl~~i~~~~~~~g~~~~~i~V~vrtGDt~~~eR~rll~~---p--pdILVTTPEsL~ 111 (1490)
T PRK09751 37 TSRILYISPIKALGTDVQRNLQIPLKGIADERRRRGETEVNLRVGIRTGDTPAQERSKLTRN---P--PDILITTPESLY 111 (1490)
T ss_pred CCEEEEEeChHHHHHHHHHHHHHHHHhhhhhhhhcccccCceEEEEEECCCCHHHHHHHhcC---C--CCEEEecHHHHH
Confidence 35799999998776555554431 36788899999999988775552 2 345777666542
Q ss_pred -----cc-cCcCccCEEEEeC
Q psy2046 103 -----LG-INLTAADTVIIHD 117 (138)
Q Consensus 103 -----~G-l~l~~~~~vi~~~ 117 (138)
.+ ..+.+..+||+=+
T Consensus 112 ~LLtsk~r~~L~~Vr~VIVDE 132 (1490)
T PRK09751 112 LMLTSRARETLRGVETVIIDE 132 (1490)
T ss_pred HHHhhhhhhhhccCCEEEEec
Confidence 11 2466777887743
No 246
>cd00640 Trp-synth-beta_II Tryptophan synthase beta superfamily (fold type II); this family of pyridoxal phosphate (PLP)-dependent enzymes catalyzes beta-replacement and beta-elimination reactions. This CD corresponds to aminocyclopropane-1-carboxylate deaminase (ACCD), tryptophan synthase beta chain (Trp-synth_B), cystathionine beta-synthase (CBS), O-acetylserine sulfhydrylase (CS), serine dehydratase (Ser-dehyd), threonine dehydratase (Thr-dehyd), diaminopropionate ammonia lyase (DAL), and threonine synthase (Thr-synth). ACCD catalyzes the conversion of 1-aminocyclopropane-1-carboxylate to alpha-ketobutyrate and ammonia. Tryptophan synthase folds into a tetramer, where the beta chain is the catalytic PLP-binding subunit and catalyzes the formation of L-tryptophan from indole and L-serine. CBS is a tetrameric hemeprotein that catalyzes condensation of serine and homocysteine to cystathionine. CS is a homodimer that catalyzes the formation of L-cysteine from O-acetyl-L-serine. Ser-dehy
Probab=74.64 E-value=26 Score=24.39 Aligned_cols=65 Identities=12% Similarity=-0.080 Sum_probs=50.3
Q ss_pred cCchHHHHHHHHHHhhhCC---CeEEEEeccHHHHHHHHHHHhhcCCeEEEEeCCCChHHHHHHHHHH
Q psy2046 21 ESGKLKKLDEILPDLKKNG---HRVLIFSQFIFVLDILGHYMDIRGWRHLRLDGATQVSSRQELIDEY 85 (138)
Q Consensus 21 ~s~K~~~l~~ll~~~~~~~---~k~iif~~~~~~~~~l~~~l~~~g~~~~~i~g~~~~~~R~~~~~~F 85 (138)
-|-|...+..++....+.+ .+.||-+..-+....++...+..|+++..+........+.+.++.|
T Consensus 28 gS~K~R~a~~~l~~a~~~g~~~~~~vv~~ssGN~g~alA~~a~~~g~~~~v~~p~~~~~~~~~~~~~~ 95 (244)
T cd00640 28 GSFKDRGALNLILLAEEEGKLPKGVIIESTGGNTGIALAAAAARLGLKCTIVMPEGASPEKVAQMRAL 95 (244)
T ss_pred CCcHHHHHHHHHHHHHHcCCCCCCEEEEeCCcHHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHHC
Confidence 5779998888888776666 4555555555777888888888999988888877777888888887
No 247
>PF00462 Glutaredoxin: Glutaredoxin; InterPro: IPR002109 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This entry represents Glutaredoxin.; GO: 0009055 electron carrier activity, 0015035 protein disulfide oxidoreductase activity, 0045454 cell redox homeostasis; PDB: 1QFN_A 1GRX_A 1EGO_A 1EGR_A 3RHC_A 3RHB_A 3IPZ_A 1NHO_A 3GX8_A 3D5J_A ....
Probab=74.48 E-value=11 Score=19.93 Aligned_cols=49 Identities=12% Similarity=0.111 Sum_probs=34.0
Q ss_pred EEEecc-HHHHHHHHHHHhhcCCeEEEEeCCCChHHHHHHHHHHhcCCCc
Q psy2046 43 LIFSQF-IFVLDILGHYMDIRGWRHLRLDGATQVSSRQELIDEYNRDQDL 91 (138)
Q Consensus 43 iif~~~-~~~~~~l~~~l~~~g~~~~~i~g~~~~~~R~~~~~~F~~~~~~ 91 (138)
++|+.. ........+.|+..|+++..++=....+.++.+.+......-+
T Consensus 2 ~vy~~~~C~~C~~~~~~L~~~~i~y~~~dv~~~~~~~~~l~~~~g~~~~P 51 (60)
T PF00462_consen 2 VVYTKPGCPYCKKAKEFLDEKGIPYEEVDVDEDEEAREELKELSGVRTVP 51 (60)
T ss_dssp EEEESTTSHHHHHHHHHHHHTTBEEEEEEGGGSHHHHHHHHHHHSSSSSS
T ss_pred EEEEcCCCcCHHHHHHHHHHcCCeeeEcccccchhHHHHHHHHcCCCccC
Confidence 444432 3567888999999999998888877776776666665433334
No 248
>PLN02356 phosphateglycerate kinase
Probab=74.10 E-value=39 Score=26.17 Aligned_cols=66 Identities=11% Similarity=-0.005 Sum_probs=53.1
Q ss_pred ccCchHHHHHHHHHHhhhCCCe----EEEEeccHHHHHHHHHHHhhcCCeEEEEeCCCChHHHHHHHHHH
Q psy2046 20 VESGKLKKLDEILPDLKKNGHR----VLIFSQFIFVLDILGHYMDIRGWRHLRLDGATQVSSRQELIDEY 85 (138)
Q Consensus 20 ~~s~K~~~l~~ll~~~~~~~~k----~iif~~~~~~~~~l~~~l~~~g~~~~~i~g~~~~~~R~~~~~~F 85 (138)
.-|-|.+....++....+.+.. +|+.+..-+....++-+-...|+++..+-......+|.+.++.|
T Consensus 80 tGS~KdR~A~~~i~~a~~~g~~~~~g~VveaSSGN~g~alA~~aa~~G~~~~ivvP~~~s~~K~~~ir~~ 149 (423)
T PLN02356 80 GGSVKDRVAVKIIEEALESGQLFPGGVVTEGSAGSTAISLATVAPAYGCKCHVVIPDDVAIEKSQILEAL 149 (423)
T ss_pred CCCHHHHHHHHHHHHHHhCCccCCCCEEEEeCCHHHHHHHHHHHHHcCCcEEEEECCCCcHHHHHHHHHc
Confidence 3567888888888777665543 77777788888899988899999988888877778888999988
No 249
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=73.97 E-value=47 Score=27.07 Aligned_cols=90 Identities=12% Similarity=0.115 Sum_probs=54.3
Q ss_pred cCchHHHH-HHHHHHhhh--CCCeEEEEeccHHHHHHHHHHHhhc-----CCeEEEEeCCCChHHHHHHHHHHhcCCCce
Q psy2046 21 ESGKLKKL-DEILPDLKK--NGHRVLIFSQFIFVLDILGHYMDIR-----GWRHLRLDGATQVSSRQELIDEYNRDQDLF 92 (138)
Q Consensus 21 ~s~K~~~l-~~ll~~~~~--~~~k~iif~~~~~~~~~l~~~l~~~-----g~~~~~i~g~~~~~~R~~~~~~F~~~~~~~ 92 (138)
-++|...+ +-++..+.. .+.++||.+++.+-+..+.+.+... ++.++.++|+.+.....+.+ +.+ +.
T Consensus 53 GsGKT~af~lpll~~l~~~~~~~~~LIL~PTreLa~Qv~~~l~~~~~~~~~i~v~~~~gG~~~~~q~~~l---~~~--~~ 127 (629)
T PRK11634 53 GSGKTAAFSLPLLHNLDPELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRAL---RQG--PQ 127 (629)
T ss_pred CCcHHHHHHHHHHHHhhhccCCCeEEEEeCcHHHHHHHHHHHHHHHhhcCCceEEEEECCcCHHHHHHHh---cCC--CC
Confidence 46776553 344444322 2358999999998877776665542 78888999998765544333 333 34
Q ss_pred EEEEecccc----c-cccCcCccCEEEE
Q psy2046 93 AFLLSTKAG----G-LGINLTAADTVII 115 (138)
Q Consensus 93 vll~~~~~~----~-~Gl~l~~~~~vi~ 115 (138)
+++.++... . ..+++.....+|+
T Consensus 128 IVVgTPgrl~d~l~r~~l~l~~l~~lVl 155 (629)
T PRK11634 128 IVVGTPGRLLDHLKRGTLDLSKLSGLVL 155 (629)
T ss_pred EEEECHHHHHHHHHcCCcchhhceEEEe
Confidence 566554332 1 2356666666665
No 250
>cd06448 L-Ser-dehyd Serine dehydratase is a pyridoxal phosphate (PLP)-dependent enzyme which catalyzes the conversion of L- , D-serine, or L-threonine to pyruvate/ketobutyrate and ammonia.
Probab=73.89 E-value=33 Score=25.21 Aligned_cols=66 Identities=11% Similarity=-0.096 Sum_probs=49.9
Q ss_pred ccCchHHHHHHHHHHhhhCC---CeEEEEeccHHHHHHHHHHHhhcCCeEEEEeCCCChHHHHHHHHHH
Q psy2046 20 VESGKLKKLDEILPDLKKNG---HRVLIFSQFIFVLDILGHYMDIRGWRHLRLDGATQVSSRQELIDEY 85 (138)
Q Consensus 20 ~~s~K~~~l~~ll~~~~~~~---~k~iif~~~~~~~~~l~~~l~~~g~~~~~i~g~~~~~~R~~~~~~F 85 (138)
.-|-|......++.+..+.+ .+.||=+..-+....++-+-...|+++..+-.......+...++.|
T Consensus 28 tGS~K~R~a~~~l~~a~~~g~~~~~~vv~aSsGN~g~alA~~a~~~G~~~~iv~p~~~~~~k~~~l~~~ 96 (316)
T cd06448 28 SGSFKIRGIGHLCQKSAKQGLNECVHVVCSSGGNAGLAAAYAARKLGVPCTIVVPESTKPRVVEKLRDE 96 (316)
T ss_pred cCChHHHHHHHHHHHHHHhhcccCCeEEEeCCcHHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHHc
Confidence 35678888777777766555 3444444456777888888888999998888887778888888888
No 251
>COG0626 MetC Cystathionine beta-lyases/cystathionine gamma-synthases [Amino acid transport and metabolism]
Probab=73.84 E-value=38 Score=25.97 Aligned_cols=103 Identities=15% Similarity=0.126 Sum_probs=47.3
Q ss_pred CchHHHHHHHHHHhhhCCCeEEEEeccHHHHHHHHHHHhhcCCeEEE---EeCCCChHHHHHHHHHHhcCCCceEEEEec
Q psy2046 22 SGKLKKLDEILPDLKKNGHRVLIFSQFIFVLDILGHYMDIRGWRHLR---LDGATQVSSRQELIDEYNRDQDLFAFLLST 98 (138)
Q Consensus 22 s~K~~~l~~ll~~~~~~~~k~iif~~~~~~~~~l~~~l~~~g~~~~~---i~g~~~~~~R~~~~~~F~~~~~~~vll~~~ 98 (138)
.+-...+.+.+..+ +.++..+.|+.--..+....-.|-+.|-.++. .+|++ .+.++.+-..-.+.+..+.+
T Consensus 62 nPT~~~lE~~~a~L-Eg~~~~~afsSGmaAI~~~~l~ll~~GD~vl~~~~~YG~t-----~~~~~~~l~~~gi~~~~~d~ 135 (396)
T COG0626 62 NPTRDALEEALAEL-EGGEDAFAFSSGMAAISTALLALLKAGDHVLLPDDLYGGT-----YRLFEKILQKFGVEVTFVDP 135 (396)
T ss_pred CccHHHHHHHHHHh-hCCCcEEEecCcHHHHHHHHHHhcCCCCEEEecCCccchH-----HHHHHHHHHhcCeEEEEECC
Confidence 34555566666553 34556667766555555433333333433322 22221 11222222222334444444
Q ss_pred cccccccC-cC-ccCEEEEeCCCCCccchhHHHH
Q psy2046 99 KAGGLGIN-LT-AADTVIIHDVDFNPYNDKQAED 130 (138)
Q Consensus 99 ~~~~~Gl~-l~-~~~~vi~~~~~~~~~~~~Q~~g 130 (138)
.....++. +. .-..+|+++.|-||....+=+.
T Consensus 136 ~~~~~~~~~~~~~~tk~v~lEtPsNP~l~v~DI~ 169 (396)
T COG0626 136 GDDEALEAAIKEPNTKLVFLETPSNPLLEVPDIP 169 (396)
T ss_pred CChHHHHHHhcccCceEEEEeCCCCcccccccHH
Confidence 33333332 22 2355677777777776655333
No 252
>PF10740 DUF2529: Protein of unknown function (DUF2529); InterPro: IPR019676 This entry represents a protein family conserved in the Bacillales. Their function is not known. ; PDB: 3JX9_A.
Probab=73.71 E-value=7.6 Score=26.03 Aligned_cols=33 Identities=24% Similarity=0.278 Sum_probs=22.7
Q ss_pred CCCeEEEEeccHHH--HHHHHHHHhhcCCeEEEEe
Q psy2046 38 NGHRVLIFSQFIFV--LDILGHYMDIRGWRHLRLD 70 (138)
Q Consensus 38 ~~~k~iif~~~~~~--~~~l~~~l~~~g~~~~~i~ 70 (138)
.-+||++|+.+... ...+.+.|...|++++.+.
T Consensus 81 ~~DRVllfs~~~~~~e~~~~a~~L~~~gi~~v~Vs 115 (172)
T PF10740_consen 81 ETDRVLLFSPFSTDEEAVALAKQLIEQGIPFVGVS 115 (172)
T ss_dssp TT-EEEEEES-S--HHHHHHHHHHHHHT--EEEEE
T ss_pred ccceEEEEeCCCCCHHHHHHHHHHHHCCCCEEEEE
Confidence 34699999998865 5578888899999999988
No 253
>PF02875 Mur_ligase_C: Mur ligase family, glutamate ligase domain This Prosite entry is a subset of the Pfam family.; InterPro: IPR004101 The bacterial cell wall provides strength and rigidity to counteract internal osmotic pressure, and protection against the environment. The peptidoglycan layer gives the cell wall its strength, and helps maintain the overall shape of the cell. The basic peptidoglycan structure of both Gram-positive and Gram-negative bacteria is comprised of a sheet of glycan chains connected by short cross-linking polypeptides. Biosynthesis of peptidoglycan is a multi-step (11-12 steps) process comprising three main stages: (1) formation of UDP-N-acetylmuramic acid (UDPMurNAc) from N-acetylglucosamine (GlcNAc). (2) addition of a short polypeptide chain to the UDPMurNAc. (3) addition of a second GlcNAc to the disaccharide-pentapeptide building block and transport of this unit through the cytoplasmic membrane and incorporation into the growing peptidoglycan layer. Stage two involves four key Mur ligase enzymes: MurC (6.3.2.8 from EC) [], MurD (6.3.2.9 from EC) [], MurE (6.3.2.13 from EC) [] and MurF (6.3.2.10 from EC) []. These four Mur ligases are responsible for the successive additions of L-alanine, D-glutamate, meso-diaminopimelate or L-lysine, and D-alanyl-D-alanine to UDP-N-acetylmuramic acid. All four Mur ligases are topologically similar to one another, even though they display low sequence identity. They are each composed of three domains: an N-terminal Rossmann-fold domain responsible for binding the UDPMurNAc substrate; a central domain (similar to ATP-binding domains of several ATPases and GTPases); and a C-terminal domain (similar to dihydrofolate reductase fold) that appears to be associated with binding the incoming amino acid. The conserved sequence motifs found in the four Mur enzymes also map to other members of the Mur ligase family, including folylpolyglutamate synthetase, cyanophycin synthetase and the capB enzyme from Bacillales []. This entry represents the C-terminal domain from all four stage 2 Mur enzymes: UDP-N-acetylmuramate-L-alanine ligase (MurC), UDP-N-acetylmuramoylalanine-D-glutamate ligase (MurD), UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase (MurE), and UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase (MurF). This entry also includes the C-terminal domain of folylpolyglutamate synthase that transfers glutamate to folylpolyglutamate and cyanophycin synthetase that catalyses the biosynthesis of the cyanobacterial reserve material multi-L-arginyl-poly-L-aspartate (cyanophycin) []. The C-terminal domain is almost always associated with the cytoplasmic peptidoglycan synthetases, N-terminal domain (see IPR000713 from INTERPRO).; GO: 0005524 ATP binding, 0016874 ligase activity, 0009058 biosynthetic process; PDB: 2Y68_A 3UAG_A 4UAG_A 2UAG_A 1E0D_A 2XPC_A 2WJP_A 2VTE_A 2Y67_A 1EEH_A ....
Probab=73.02 E-value=7.4 Score=22.66 Aligned_cols=60 Identities=18% Similarity=0.204 Sum_probs=32.0
Q ss_pred CCcccccCchHHHHHHHHHHhhhCCCeEEEEeccH-------HHHHHHHHHHhhcCCeEEEEeCCCCh
Q psy2046 15 PDDLVVESGKLKKLDEILPDLKKNGHRVLIFSQFI-------FVLDILGHYMDIRGWRHLRLDGATQV 75 (138)
Q Consensus 15 ~~~~~~~s~K~~~l~~ll~~~~~~~~k~iif~~~~-------~~~~~l~~~l~~~g~~~~~i~g~~~~ 75 (138)
..+..-+..-+..+.+.++.+...+++++||.... .....+...+...... +.+++..+.
T Consensus 17 i~D~ahNp~s~~a~l~~l~~~~~~~~~i~V~G~~~d~g~~~~~~~~~~~~~~~~~~d~-vi~~~~~~r 83 (91)
T PF02875_consen 17 IDDYAHNPDSIRALLEALKELYPKGRIIAVFGAMGDLGSKDKDFHEEIGELAAQLADV-VILTGDNPR 83 (91)
T ss_dssp EEET--SHHHHHHHHHHHHHHCTTSEEEEEEEEBTT-HTSHHHCHHHHHHHHTTCSSE-EEEETSBTT
T ss_pred EEECCCCHHHHHHHHHHHHHhccCCcEEEEEccccccccccHHHHHHHHHHHHhcCCE-EEEcCCCCC
Confidence 33444444566677777776656666777777421 1234555555544333 566665443
No 254
>COG0553 HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair]
Probab=72.81 E-value=0.53 Score=38.71 Aligned_cols=39 Identities=13% Similarity=0.014 Sum_probs=32.3
Q ss_pred eccccccccCcCccCEEEEeCCCCCccchhHHHHHHhhcCC
Q psy2046 97 STKAGGLGINLTAADTVIIHDVDFNPYNDKQAEDRCHRVGQ 137 (138)
Q Consensus 97 ~~~~~~~Gl~l~~~~~vi~~~~~~~~~~~~Q~~gR~~R~GQ 137 (138)
....+.++.++..++..+.++.+|+| .+|++++.|+++|
T Consensus 485 kn~~s~~~~~l~~~~~~~~~~LtgTP--len~l~eL~sl~~ 523 (866)
T COG0553 485 KNDQSSEGKALQFLKALNRLDLTGTP--LENRLGELWSLLQ 523 (866)
T ss_pred hhhhhHHHHHHHHHhhcceeeCCCCh--HhhhHHHHHHHHH
Confidence 34556778888888888889999999 6899999999876
No 255
>cd01526 RHOD_ThiF Member of the Rhodanese Homology Domain superfamily. This CD includes several putative molybdopterin synthase sulfurylases including the molybdenum cofactor biosynthetic protein (CnxF) of Aspergillus nidulans and the molybdenum cofactor synthesis protein 3 (MOCS3) of Homo sapiens. These rhodanese-like domains are found C-terminal of the ThiF and MoeZ_MoeB domains.
Probab=72.03 E-value=4.9 Score=24.88 Aligned_cols=38 Identities=5% Similarity=-0.088 Sum_probs=30.2
Q ss_pred hCCCeEEEEeccHHHHHHHHHHHhhcCC--eEEEEeCCCC
Q psy2046 37 KNGHRVLIFSQFIFVLDILGHYMDIRGW--RHLRLDGATQ 74 (138)
Q Consensus 37 ~~~~k~iif~~~~~~~~~l~~~l~~~g~--~~~~i~g~~~ 74 (138)
..++++++||..-.........|...|+ ++..+.|++.
T Consensus 70 ~~~~~ivv~C~~G~rs~~aa~~L~~~G~~~~v~~l~GG~~ 109 (122)
T cd01526 70 DKDSPIYVVCRRGNDSQTAVRKLKELGLERFVRDIIGGLK 109 (122)
T ss_pred CCCCcEEEECCCCCcHHHHHHHHHHcCCccceeeecchHH
Confidence 3456899999887667778889999999 5788888774
No 256
>cd01519 RHOD_HSP67B2 Member of the Rhodanese Homology Domain superfamily. This CD includes the heat shock protein 67B2 of Drosophila melanogaster and other similar proteins, many of which are uncharacterized.
Probab=71.74 E-value=8.6 Score=22.78 Aligned_cols=36 Identities=6% Similarity=0.061 Sum_probs=27.4
Q ss_pred CCCeEEEEeccHHHHHHHHHHHhhcCCe-EEEEeCCC
Q psy2046 38 NGHRVLIFSQFIFVLDILGHYMDIRGWR-HLRLDGAT 73 (138)
Q Consensus 38 ~~~k~iif~~~~~~~~~l~~~l~~~g~~-~~~i~g~~ 73 (138)
.++.+|+||..-.........|...|++ +..+.|++
T Consensus 65 ~~~~ivv~c~~g~~s~~~~~~l~~~G~~~v~~~~Gg~ 101 (106)
T cd01519 65 KDKELIFYCKAGVRSKAAAELARSLGYENVGNYPGSW 101 (106)
T ss_pred CCCeEEEECCCcHHHHHHHHHHHHcCCccceecCCcH
Confidence 4568999998877777788888888985 55667765
No 257
>PLN03137 ATP-dependent DNA helicase; Q4-like; Provisional
Probab=71.06 E-value=64 Score=28.49 Aligned_cols=63 Identities=8% Similarity=0.043 Sum_probs=46.9
Q ss_pred CCeEEEEeccHHHHHHHHHHHhhcCCeEEEEeCCCChHHHHHHHHHHhc-CCCceEEEEecccc
Q psy2046 39 GHRVLIFSQFIFVLDILGHYMDIRGWRHLRLDGATQVSSRQELIDEYNR-DQDLFAFLLSTKAG 101 (138)
Q Consensus 39 ~~k~iif~~~~~~~~~l~~~l~~~g~~~~~i~g~~~~~~R~~~~~~F~~-~~~~~vll~~~~~~ 101 (138)
+..+||.++.+.-...-...|...|+++..+.|+++..++.+++..+.. .....+|++++...
T Consensus 500 ~GiTLVISPLiSLmqDQV~~L~~~GI~Aa~L~s~~s~~eq~~ilr~l~s~~g~~~ILyvTPERL 563 (1195)
T PLN03137 500 PGITLVISPLVSLIQDQIMNLLQANIPAASLSAGMEWAEQLEILQELSSEYSKYKLLYVTPEKV 563 (1195)
T ss_pred CCcEEEEeCHHHHHHHHHHHHHhCCCeEEEEECCCCHHHHHHHHHHHHhcCCCCCEEEEChHHh
Confidence 4478999998877653334455679999999999999999888888764 23456778777654
No 258
>PRK10287 thiosulfate:cyanide sulfurtransferase; Provisional
Probab=71.04 E-value=21 Score=21.68 Aligned_cols=46 Identities=11% Similarity=0.109 Sum_probs=31.2
Q ss_pred HHHHHHHhh-hCCCeEEEEeccHHHHHHHHHHHhhcCCeEEEEeCCC
Q psy2046 28 LDEILPDLK-KNGHRVLIFSQFIFVLDILGHYMDIRGWRHLRLDGAT 73 (138)
Q Consensus 28 l~~ll~~~~-~~~~k~iif~~~~~~~~~l~~~l~~~g~~~~~i~g~~ 73 (138)
+.+.+..+. ..++.+++||..-.........|.+.|++-+...|++
T Consensus 48 l~~~l~~l~~~~~~~IVlyC~~G~rS~~aa~~L~~~G~~~v~~~GG~ 94 (104)
T PRK10287 48 VKERIATAVPDKNDTVKLYCNAGRQSGQAKEILSEMGYTHAENAGGL 94 (104)
T ss_pred HHHHHHhcCCCCCCeEEEEeCCChHHHHHHHHHHHcCCCeEEecCCH
Confidence 334444432 2345799999887677777888888898766666765
No 259
>TIGR03167 tRNA_sel_U_synt tRNA 2-selenouridine synthase. The Escherichia coli YbbB protein was shown to encode a selenophosphate-dependent tRNA 2-selenouridine synthase, essential for modification of some tRNAs to replace a sulfur atom with selenium. This enzyme works with SelD, the selenium donor protein, which also acts in selenocysteine incorporation. Although the members of this protein family show a fairly deep split, sequences from both sides of the split are supported by co-occurence with, and often proximity to, the selD gene.
Probab=70.84 E-value=17 Score=26.78 Aligned_cols=49 Identities=20% Similarity=0.257 Sum_probs=33.2
Q ss_pred hCCCeEEEEec-cHHHHHHHHHHHhhcCCeEEEEeCCCChHHHHHHHHHHh
Q psy2046 37 KNGHRVLIFSQ-FIFVLDILGHYMDIRGWRHLRLDGATQVSSRQELIDEYN 86 (138)
Q Consensus 37 ~~~~k~iif~~-~~~~~~~l~~~l~~~g~~~~~i~g~~~~~~R~~~~~~F~ 86 (138)
..+.++++||. .-........+|...|+.+..+.|+... =+......+.
T Consensus 72 ~~~~~vvvyC~~gG~RS~~aa~~L~~~G~~v~~L~GG~~a-w~~~~~~~~~ 121 (311)
T TIGR03167 72 DGPPQPLLYCWRGGMRSGSLAWLLAQIGFRVPRLEGGYKA-YRRFVIDQLE 121 (311)
T ss_pred CCCCcEEEEECCCChHHHHHHHHHHHcCCCEEEecChHHH-HHHhhhhhhh
Confidence 33446999995 3445677788899999998889988742 3334444443
No 260
>PRK10329 glutaredoxin-like protein; Provisional
Probab=70.80 E-value=18 Score=20.80 Aligned_cols=41 Identities=15% Similarity=0.199 Sum_probs=30.6
Q ss_pred eEEEEe-ccHHHHHHHHHHHhhcCCeEEEEeCCCChHHHHHH
Q psy2046 41 RVLIFS-QFIFVLDILGHYMDIRGWRHLRLDGATQVSSRQEL 81 (138)
Q Consensus 41 k~iif~-~~~~~~~~l~~~l~~~g~~~~~i~g~~~~~~R~~~ 81 (138)
++.+|+ ...-..+....+|.+.|+++..++-...++.+...
T Consensus 2 ~v~lYt~~~Cp~C~~ak~~L~~~gI~~~~idi~~~~~~~~~~ 43 (81)
T PRK10329 2 RITIYTRNDCVQCHATKRAMESRGFDFEMINVDRVPEAAETL 43 (81)
T ss_pred EEEEEeCCCCHhHHHHHHHHHHCCCceEEEECCCCHHHHHHH
Confidence 567777 34466788999999999999988887665555444
No 261
>PRK11761 cysM cysteine synthase B; Provisional
Probab=70.36 E-value=39 Score=24.57 Aligned_cols=66 Identities=18% Similarity=0.128 Sum_probs=52.3
Q ss_pred ccCchHHHHHHHHHHhhhCCC----eEEEEeccHHHHHHHHHHHhhcCCeEEEEeCCCChHHHHHHHHHH
Q psy2046 20 VESGKLKKLDEILPDLKKNGH----RVLIFSQFIFVLDILGHYMDIRGWRHLRLDGATQVSSRQELIDEY 85 (138)
Q Consensus 20 ~~s~K~~~l~~ll~~~~~~~~----k~iif~~~~~~~~~l~~~l~~~g~~~~~i~g~~~~~~R~~~~~~F 85 (138)
.-|-|.+....++....+.+. +.||-+..-+....++-+-...|+++..+-....+..+.+.++.|
T Consensus 39 tGS~K~R~a~~~~~~a~~~g~~~~g~~vv~aSsGN~g~alA~~a~~~G~~~~i~~p~~~~~~k~~~~~~~ 108 (296)
T PRK11761 39 AGSVKDRPALSMIVQAEKRGEIKPGDTLIEATSGNTGIALAMIAAIKGYRMKLIMPENMSQERRAAMRAY 108 (296)
T ss_pred CCCchhHHHHHHHHHHHHcCCCCCCCEEEEeCCChHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHHc
Confidence 446788888888887766654 556667777888888888888999988888877667888899988
No 262
>cd01535 4RHOD_Repeat_4 Member of the Rhodanese Homology Domain superfamily, repeat 4. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 4th repeat which, in general, contains the putative catalytic Cys residue.
Probab=70.22 E-value=17 Score=23.43 Aligned_cols=47 Identities=15% Similarity=0.162 Sum_probs=34.1
Q ss_pred HHHHHHHHhhhCCCeEEEEeccHHHHHHHHHHHhhcCC-eEEEEeCCCC
Q psy2046 27 KLDEILPDLKKNGHRVLIFSQFIFVLDILGHYMDIRGW-RHLRLDGATQ 74 (138)
Q Consensus 27 ~l~~ll~~~~~~~~k~iif~~~~~~~~~l~~~l~~~g~-~~~~i~g~~~ 74 (138)
.+.+.+..+ ..+.++||+|............|+..|+ ++..+.|++.
T Consensus 38 ~l~~~l~~l-~~~~~vVv~c~~g~~a~~aa~~L~~~G~~~v~~L~GG~~ 85 (145)
T cd01535 38 QLAQALEKL-PAAERYVLTCGSSLLARFAAADLAALTVKPVFVLEGGTA 85 (145)
T ss_pred HHHHHHHhc-CCCCCEEEEeCCChHHHHHHHHHHHcCCcCeEEecCcHH
Confidence 344445443 3456899999887777777888888888 5788999874
No 263
>cd01527 RHOD_YgaP Member of the Rhodanese Homology Domain superfamily. This CD includes Escherichia coli YgaP, and similar uncharacterized putative rhodanese-related sulfurtransferases.
Probab=70.17 E-value=12 Score=21.92 Aligned_cols=38 Identities=5% Similarity=0.015 Sum_probs=28.0
Q ss_pred hCCCeEEEEeccHHHHHHHHHHHhhcCC-eEEEEeCCCC
Q psy2046 37 KNGHRVLIFSQFIFVLDILGHYMDIRGW-RHLRLDGATQ 74 (138)
Q Consensus 37 ~~~~k~iif~~~~~~~~~l~~~l~~~g~-~~~~i~g~~~ 74 (138)
..+++++++|..-.........|.+.|+ .+..+.|+..
T Consensus 52 ~~~~~iv~~c~~g~~s~~~~~~L~~~g~~~v~~l~gG~~ 90 (99)
T cd01527 52 VGANAIIFHCRSGMRTQQNAERLAAISAGEAYVLEGGLD 90 (99)
T ss_pred CCCCcEEEEeCCCchHHHHHHHHHHcCCccEEEeeCCHH
Confidence 4457899999887666777888888777 4666888753
No 264
>cd03030 GRX_SH3BGR Glutaredoxin (GRX) family, SH3BGR (SH3 domain binding glutamic acid-rich protein) subfamily; a recently-identified subfamily composed of SH3BGR and similar proteins possessing significant sequence similarity to GRX, but without a redox active CXXC motif. The SH3BGR gene was cloned in an effort to identify genes mapping to chromosome 21, which could be involved in the pathogenesis of congenital heart disease affecting Down syndrome newborns. Several human SH3BGR-like (SH3BGRL) genes have been identified since, mapping to different locations in the chromosome. Of these, SH3BGRL3 was identified as a tumor necrosis factor (TNF) alpha inhibitory protein and was also named TIP-B1. Upregulation of expression of SH3BGRL3 is associated with differentiation. It has been suggested that it functions as a regulator of differentiation-related signal transduction pathways.
Probab=70.08 E-value=20 Score=21.26 Aligned_cols=37 Identities=8% Similarity=0.023 Sum_probs=30.9
Q ss_pred HHHHHHHHHHhhcCCeEEEEeCCCChHHHHHHHHHHh
Q psy2046 50 FVLDILGHYMDIRGWRHLRLDGATQVSSRQELIDEYN 86 (138)
Q Consensus 50 ~~~~~l~~~l~~~g~~~~~i~g~~~~~~R~~~~~~F~ 86 (138)
+....+...|...+++|..++=+++++.|....+.-.
T Consensus 17 ~~~~~v~~lL~~k~I~f~eiDI~~d~~~r~em~~~~~ 53 (92)
T cd03030 17 KRQQEVLGFLEAKKIEFEEVDISMNEENRQWMRENVP 53 (92)
T ss_pred HHHHHHHHHHHHCCCceEEEecCCCHHHHHHHHHhcC
Confidence 4466788899999999999999999999998887654
No 265
>cd01447 Polysulfide_ST Polysulfide-sulfurtransferase - Rhodanese Homology Domain. This domain is believed to serve as a polysulfide binding and transferase domain in anaerobic gram-negative bacteria, functioning in oxidative phosphorylation with polysulfide-sulfur as a terminal electron acceptor. The active site contains the same conserved cysteine that is the catalytic residue in other Rhodanese Homology Domain proteins.
Probab=70.07 E-value=6.3 Score=23.16 Aligned_cols=38 Identities=8% Similarity=0.212 Sum_probs=27.6
Q ss_pred hCCCeEEEEeccHHHHHHHHHHHhhcCCe-EEEEeCCCC
Q psy2046 37 KNGHRVLIFSQFIFVLDILGHYMDIRGWR-HLRLDGATQ 74 (138)
Q Consensus 37 ~~~~k~iif~~~~~~~~~l~~~l~~~g~~-~~~i~g~~~ 74 (138)
..+.+++|||............|...|+. +..+.|+..
T Consensus 59 ~~~~~ivv~c~~g~~s~~~~~~l~~~G~~~v~~l~Gg~~ 97 (103)
T cd01447 59 AEDKPFVFYCASGWRSALAGKTLQDMGLKPVYNIEGGFK 97 (103)
T ss_pred CCCCeEEEEcCCCCcHHHHHHHHHHcChHHhEeecCcHH
Confidence 34678999997755566777888888876 667777653
No 266
>PRK15483 type III restriction-modification system StyLTI enzyme res; Provisional
Probab=69.93 E-value=5.4 Score=33.95 Aligned_cols=45 Identities=16% Similarity=-0.021 Sum_probs=38.9
Q ss_pred ceEEEEeccccccccCcCccCEEEEeCCCCCccchhHHHHHHhhc
Q psy2046 91 LFAFLLSTKAGGLGINLTAADTVIIHDVDFNPYNDKQAEDRCHRV 135 (138)
Q Consensus 91 ~~vll~~~~~~~~Gl~l~~~~~vi~~~~~~~~~~~~Q~~gR~~R~ 135 (138)
+.-+++|-.++.+|-|.|++-.+.-+...-+...-.|-+||.-|+
T Consensus 501 ~~~fifs~~al~egwd~~~~~~~~~l~~~~s~~~~~q~~gr~lr~ 545 (986)
T PRK15483 501 TRRFLFSKWTLREGWDNPNVFQIAKLRSSGSETSKLQEVGRGLRL 545 (986)
T ss_pred CeEEEEEhHHhhhcCCCCCeEEEEEeccCCchHHHHHHhccceec
Confidence 445888999999999999998888888777777888999999886
No 267
>PF13344 Hydrolase_6: Haloacid dehalogenase-like hydrolase; PDB: 2HO4_B 1YV9_A 1WVI_B 3EPR_A 2P27_A 2OYC_A 2CFT_A 2P69_A 2CFS_A 2CFR_A ....
Probab=69.67 E-value=8.9 Score=23.07 Aligned_cols=42 Identities=14% Similarity=0.131 Sum_probs=29.8
Q ss_pred HHHHHHHHHHhhhCCCeEEEEeccH-HHHHHHHHHHhhcCCeE
Q psy2046 25 LKKLDEILPDLKKNGHRVLIFSQFI-FVLDILGHYMDIRGWRH 66 (138)
Q Consensus 25 ~~~l~~ll~~~~~~~~k~iif~~~~-~~~~~l~~~l~~~g~~~ 66 (138)
+.-..+.+..+.+.+.++++.++.. .....+.+.|+..|+++
T Consensus 16 ipga~e~l~~L~~~g~~~~~lTNns~~s~~~~~~~L~~~Gi~~ 58 (101)
T PF13344_consen 16 IPGAVEALDALRERGKPVVFLTNNSSRSREEYAKKLKKLGIPV 58 (101)
T ss_dssp -TTHHHHHHHHHHTTSEEEEEES-SSS-HHHHHHHHHHTTTT-
T ss_pred CcCHHHHHHHHHHcCCCEEEEeCCCCCCHHHHHHHHHhcCcCC
Confidence 3445566777777888999999887 44578888889899885
No 268
>COG0300 DltE Short-chain dehydrogenases of various substrate specificities [General function prediction only]
Probab=69.30 E-value=40 Score=24.33 Aligned_cols=82 Identities=16% Similarity=0.205 Sum_probs=52.6
Q ss_pred ccCchHHHHHHHHHHhhhCCCeEEEEeccHHHHHHHHHHHhhc-CCeEEEEeCCCChH-HHHHHHHHHhcC-CCceEEEE
Q psy2046 20 VESGKLKKLDEILPDLKKNGHRVLIFSQFIFVLDILGHYMDIR-GWRHLRLDGATQVS-SRQELIDEYNRD-QDLFAFLL 96 (138)
Q Consensus 20 ~~s~K~~~l~~ll~~~~~~~~k~iif~~~~~~~~~l~~~l~~~-g~~~~~i~g~~~~~-~R~~~~~~F~~~-~~~~vll~ 96 (138)
.-|+-+. .++.+.+.++|..+|+.+...+-++.|++.|+.. ++.+..+.-+.+.. +..++.+.-+.. ..+- +|+
T Consensus 13 GASsGIG--~~~A~~lA~~g~~liLvaR~~~kL~~la~~l~~~~~v~v~vi~~DLs~~~~~~~l~~~l~~~~~~Id-vLV 89 (265)
T COG0300 13 GASSGIG--AELAKQLARRGYNLILVARREDKLEALAKELEDKTGVEVEVIPADLSDPEALERLEDELKERGGPID-VLV 89 (265)
T ss_pred CCCchHH--HHHHHHHHHCCCEEEEEeCcHHHHHHHHHHHHHhhCceEEEEECcCCChhHHHHHHHHHHhcCCccc-EEE
Confidence 3444444 2344556788999999999999999999999764 67777888887654 444444444433 2333 443
Q ss_pred eccccccccC
Q psy2046 97 STKAGGLGIN 106 (138)
Q Consensus 97 ~~~~~~~Gl~ 106 (138)
..+|.|..
T Consensus 90 --NNAG~g~~ 97 (265)
T COG0300 90 --NNAGFGTF 97 (265)
T ss_pred --ECCCcCCc
Confidence 34555554
No 269
>cd01561 CBS_like CBS_like: This subgroup includes Cystathionine beta-synthase (CBS) and Cysteine synthase. CBS is a unique heme-containing enzyme that catalyzes a pyridoxal 5'-phosphate (PLP)-dependent condensation of serine and homocysteine to give cystathionine. Deficiency of CBS leads to homocystinuria, an inherited disease of sulfur metabolism characterized by increased levels of the toxic metabolite homocysteine. Cysteine synthase on the other hand catalyzes the last step of cysteine biosynthesis. This subgroup also includes an O-Phosphoserine sulfhydrylase found in hyperthermophilic archaea which produces L-cysteine from sulfide and the more thermostable O-phospho-L-serine.
Probab=68.89 E-value=41 Score=24.22 Aligned_cols=65 Identities=17% Similarity=0.086 Sum_probs=50.9
Q ss_pred cCchHHHHHHHHHHhhhCCC----eEEEEeccHHHHHHHHHHHhhcCCeEEEEeCCCChHHHHHHHHHH
Q psy2046 21 ESGKLKKLDEILPDLKKNGH----RVLIFSQFIFVLDILGHYMDIRGWRHLRLDGATQVSSRQELIDEY 85 (138)
Q Consensus 21 ~s~K~~~l~~ll~~~~~~~~----k~iif~~~~~~~~~l~~~l~~~g~~~~~i~g~~~~~~R~~~~~~F 85 (138)
-|-|...+..++....+.+. ..||-+..-+....++-+-...|+++..+-.......+.+.++.|
T Consensus 30 gS~K~R~a~~~l~~a~~~g~~~~~~~vv~~SsGN~g~alA~~a~~~G~~~~i~vp~~~~~~k~~~~~~~ 98 (291)
T cd01561 30 GSVKDRIALYMIEDAEKRGLLKPGTTIIEPTSGNTGIGLAMVAAAKGYRFIIVMPETMSEEKRKLLRAL 98 (291)
T ss_pred CcchHHHHHHHHHHHHHcCCCCCCCEEEEeCCChHHHHHHHHHHHcCCeEEEEECCCCCHHHHHHHHHc
Confidence 67899998888888776664 456667777888888888888999988877766666777788877
No 270
>PRK11070 ssDNA exonuclease RecJ; Provisional
Probab=68.87 E-value=61 Score=26.22 Aligned_cols=42 Identities=17% Similarity=0.219 Sum_probs=31.8
Q ss_pred chHHHHHHHHHHhhhCCCeEEEEeccHHH----HHHHHHHHhhcCC
Q psy2046 23 GKLKKLDEILPDLKKNGHRVLIFSQFIFV----LDILGHYMDIRGW 64 (138)
Q Consensus 23 ~K~~~l~~ll~~~~~~~~k~iif~~~~~~----~~~l~~~l~~~g~ 64 (138)
..+....+.+.+...++++++||.++..+ .-.+...|+..|.
T Consensus 53 ~~m~~a~~ri~~ai~~~e~I~I~gDyD~DGitstail~~~L~~~g~ 98 (575)
T PRK11070 53 SGIEKAVELLYNALREGTRIIVVGDFDADGATSTALSVLALRSLGC 98 (575)
T ss_pred hCHHHHHHHHHHHHHCCCEEEEEEecCccHHHHHHHHHHHHHHcCC
Confidence 34566666666667788999999999844 5577888888887
No 271
>cd01563 Thr-synth_1 Threonine synthase is a pyridoxal phosphate (PLP) dependent enzyme that catalyses the last reaction in the synthesis of threonine from aspartate. It proceeds by converting O-phospho-L-homoserine (OPH) into threonine and inorganic phosphate. In plants, OPH is an intermediate between the methionine and threonine/isoleucine pathways. Thus threonine synthase competes for OPH with cystathionine-gamma-synthase, the first enzyme in the methionine pathway. These enzymes are in general dimers. Members of this CD, Thr-synth_1, are widely distributed in bacteria, archaea and higher plants.
Probab=68.84 E-value=43 Score=24.49 Aligned_cols=66 Identities=14% Similarity=0.045 Sum_probs=48.4
Q ss_pred ccCchHHHHHHHHHHhhhCCCeEEEEeccHHHHHHHHHHHhhcCCeEEEEeCCCChHHHHHHHHHH
Q psy2046 20 VESGKLKKLDEILPDLKKNGHRVLIFSQFIFVLDILGHYMDIRGWRHLRLDGATQVSSRQELIDEY 85 (138)
Q Consensus 20 ~~s~K~~~l~~ll~~~~~~~~k~iif~~~~~~~~~l~~~l~~~g~~~~~i~g~~~~~~R~~~~~~F 85 (138)
.-|-|...+..++.+..+++.+.||=+..-+....++-+-...|+++..+........+.+.++.|
T Consensus 50 tGS~K~R~a~~~l~~a~~~g~~~vv~~SsGN~g~alA~~a~~~G~~~~ivvp~~~~~~k~~~l~~~ 115 (324)
T cd01563 50 TGSFKDRGMTVAVSKAKELGVKAVACASTGNTSASLAAYAARAGIKCVVFLPAGKALGKLAQALAY 115 (324)
T ss_pred cccHHHhhHHHHHHHHHHcCCCEEEEeCCCHHHHHHHHHHHHcCCceEEEEeCCCCHHHHHHHHHc
Confidence 456788888888888776665555544455777788877788899987777665566777778877
No 272
>COG1560 HtrB Lauroyl/myristoyl acyltransferase [Cell envelope biogenesis, outer membrane]
Probab=68.74 E-value=38 Score=25.03 Aligned_cols=44 Identities=16% Similarity=0.192 Sum_probs=34.6
Q ss_pred HHHHHhhhCCCeEEEEeccHHHHHHHHHHHhhcCCeEEEEeCCC
Q psy2046 30 EILPDLKKNGHRVLIFSQFIFVLDILGHYMDIRGWRHLRLDGAT 73 (138)
Q Consensus 30 ~ll~~~~~~~~k~iif~~~~~~~~~l~~~l~~~g~~~~~i~g~~ 73 (138)
+.+.+..++++.+|+++.+-...|....++...+..+..++...
T Consensus 113 e~l~e~l~~~~gvIl~~~H~gn~E~~~~~l~~~~~~~~~~yrp~ 156 (308)
T COG1560 113 EHLEEALANGRGVILVTPHFGNWELGGRALAQQGPKVTAMYRPP 156 (308)
T ss_pred HHHHHHHHcCCCEEEEecCcchHHHHHHHHHHhCCCeeEEecCC
Confidence 34555667888999999999999999999998888755554443
No 273
>PF09413 DUF2007: Domain of unknown function (DUF2007); InterPro: IPR018551 This is a family of proteins with unknown function. ; PDB: 2HFV_A.
Probab=68.66 E-value=13 Score=20.22 Aligned_cols=32 Identities=6% Similarity=0.005 Sum_probs=19.0
Q ss_pred EEEEeccHHHHHHHHHHHhhcCCeEEEEeCCC
Q psy2046 42 VLIFSQFIFVLDILGHYMDIRGWRHLRLDGAT 73 (138)
Q Consensus 42 ~iif~~~~~~~~~l~~~l~~~g~~~~~i~g~~ 73 (138)
.|..+...-.+..+...|+..||++......+
T Consensus 2 ~l~~~~~~~ea~~i~~~L~~~gI~~~v~~~~~ 33 (67)
T PF09413_consen 2 KLYTAGDPIEAELIKGLLEENGIPAFVKNEHM 33 (67)
T ss_dssp EEEEE--HHHHHHHHHHHHHTT--EE--S---
T ss_pred EEEEcCCHHHHHHHHHHHHhCCCcEEEECCcc
Confidence 45667777889999999999999986654433
No 274
>KOG0339|consensus
Probab=68.52 E-value=44 Score=26.86 Aligned_cols=73 Identities=10% Similarity=0.046 Sum_probs=49.7
Q ss_pred CCeEEEEeccHHHHHHHHHHHhh----cCCeEEEEeCCCChHHHHHHHHHHhcCCCceEEEEecccc-----ccccCcCc
Q psy2046 39 GHRVLIFSQFIFVLDILGHYMDI----RGWRHLRLDGATQVSSRQELIDEYNRDQDLFAFLLSTKAG-----GLGINLTA 109 (138)
Q Consensus 39 ~~k~iif~~~~~~~~~l~~~l~~----~g~~~~~i~g~~~~~~R~~~~~~F~~~~~~~vll~~~~~~-----~~Gl~l~~ 109 (138)
+.-.+|.+++.+-...+....++ -|+..+.+||+.+..+..+.++ .+.. ++++++.-+ --++|+.+
T Consensus 296 gPi~vilvPTrela~Qi~~eaKkf~K~ygl~~v~~ygGgsk~eQ~k~Lk---~g~E--ivVaTPgRlid~VkmKatn~~r 370 (731)
T KOG0339|consen 296 GPIGVILVPTRELASQIFSEAKKFGKAYGLRVVAVYGGGSKWEQSKELK---EGAE--IVVATPGRLIDMVKMKATNLSR 370 (731)
T ss_pred CCeEEEEeccHHHHHHHHHHHHHhhhhccceEEEeecCCcHHHHHHhhh---cCCe--EEEechHHHHHHHHhhccccee
Confidence 44577888888776665554444 4888999999999877766666 4433 244444321 25788999
Q ss_pred cCEEEEe
Q psy2046 110 ADTVIIH 116 (138)
Q Consensus 110 ~~~vi~~ 116 (138)
++.+|+=
T Consensus 371 vS~LV~D 377 (731)
T KOG0339|consen 371 VSYLVLD 377 (731)
T ss_pred eeEEEEe
Confidence 9998883
No 275
>TIGR02981 phageshock_pspE phage shock operon rhodanese PspE. Members of this very narrowly defined protein family are proteins active as rhodanese (EC 2.8.1.1) and found in the extended variants of the phage shock protein (psp operon) in Escherichia coli and a few closely related species. Note that the designation phage shock protein PspE has been applied, incorrectly, in many instances where the genome lacks the phage shock regulon entirely.
Probab=68.48 E-value=23 Score=21.28 Aligned_cols=36 Identities=11% Similarity=0.095 Sum_probs=27.5
Q ss_pred CCCeEEEEeccHHHHHHHHHHHhhcCCeEEEEeCCC
Q psy2046 38 NGHRVLIFSQFIFVLDILGHYMDIRGWRHLRLDGAT 73 (138)
Q Consensus 38 ~~~k~iif~~~~~~~~~l~~~l~~~g~~~~~i~g~~ 73 (138)
.+.+++++|..-.........|...|+.-+...|++
T Consensus 57 ~~~~vvlyC~~G~rS~~aa~~L~~~G~~~v~~~GG~ 92 (101)
T TIGR02981 57 KNDTVKLYCNAGRQSGMAKDILLDMGYTHAENAGGI 92 (101)
T ss_pred CCCeEEEEeCCCHHHHHHHHHHHHcCCCeEEecCCH
Confidence 355788999887777778889999998755555764
No 276
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=68.23 E-value=55 Score=25.52 Aligned_cols=77 Identities=17% Similarity=0.207 Sum_probs=52.3
Q ss_pred cCchHHHHHHHHHHhhhCCCeEEEEecc---HHHHHHHHHHHhhcCCeEEEEeCCC-ChHHHHHHHHHHhcCCCceEEEE
Q psy2046 21 ESGKLKKLDEILPDLKKNGHRVLIFSQF---IFVLDILGHYMDIRGWRHLRLDGAT-QVSSRQELIDEYNRDQDLFAFLL 96 (138)
Q Consensus 21 ~s~K~~~l~~ll~~~~~~~~k~iif~~~---~~~~~~l~~~l~~~g~~~~~i~g~~-~~~~R~~~~~~F~~~~~~~vll~ 96 (138)
-|+|.....++-..+.+.+.|+++-+.- +...+.|...-...++++....... +.+--.+.++.|+.... .++++
T Consensus 110 GsGKTTt~~KLA~~lkk~~~kvllVaaD~~RpAA~eQL~~La~q~~v~~f~~~~~~~Pv~Iak~al~~ak~~~~-DvvIv 188 (451)
T COG0541 110 GSGKTTTAGKLAKYLKKKGKKVLLVAADTYRPAAIEQLKQLAEQVGVPFFGSGTEKDPVEIAKAALEKAKEEGY-DVVIV 188 (451)
T ss_pred CCChHhHHHHHHHHHHHcCCceEEEecccCChHHHHHHHHHHHHcCCceecCCCCCCHHHHHHHHHHHHHHcCC-CEEEE
Confidence 4789888888888777778887766543 2456777777777788876664344 44455778999987643 35666
Q ss_pred ec
Q psy2046 97 ST 98 (138)
Q Consensus 97 ~~ 98 (138)
.|
T Consensus 189 DT 190 (451)
T COG0541 189 DT 190 (451)
T ss_pred eC
Confidence 54
No 277
>PF00291 PALP: Pyridoxal-phosphate dependent enzyme; InterPro: IPR001926 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal). Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. Pyridoxal-5'-phosphate-dependent enzymes (B6 enzymes) catalyze manifold reactions in the metabolism of amino acids. Most of these enzymes can be assigned to one of three different families of homologous proteins, the alpha, beta and gamma families. The alpha and gamma family might be distantly related with one another, but are clearly not homologous with the beta family. The beta family includes L- and D-serine dehydratase, threonine dehydratase, the beta subunit of tryptophan synthase, threonine synthase and cysteine synthase. These enzymes catalyze beta-replacement or beta-elimination reactions []. Comparison of sequences from eukaryotic, archebacterial, and eubacterial species indicates that the functional specialization of most B6 enzymes has occurred already in the universal ancestor cell. The cofactor pyridoxal-5-phosphate must have emerged very early in biological evolution; conceivably, organic cofactors and metal ions were the first biological catalysts []. The 3D structure of the beta-subunit of tryptophan synthase has been solved. The subunit has two domains that are approximately the same size and similar to each other in folding pattern. Each has a core containing a four-stranded parallel beta-sheet with three helices on its inner side and one on the outer side. The cofactor is bound at the interface between the domains [].; GO: 0003824 catalytic activity, 0030170 pyridoxal phosphate binding, 0008152 metabolic process; PDB: 1P5J_A 2D1F_B 3AEY_B 3AEX_B 3IAU_A 2Q3B_A 2Q3D_A 2Q3C_A 1TZJ_A 1RQX_D ....
Probab=68.03 E-value=42 Score=24.04 Aligned_cols=66 Identities=12% Similarity=-0.045 Sum_probs=51.9
Q ss_pred ccCchHHHHHHHHHHhhhCCCeEEEEeccHHHHHHHHHHHhhcCCeEEEEeCCCChHHHHHHHHHH
Q psy2046 20 VESGKLKKLDEILPDLKKNGHRVLIFSQFIFVLDILGHYMDIRGWRHLRLDGATQVSSRQELIDEY 85 (138)
Q Consensus 20 ~~s~K~~~l~~ll~~~~~~~~k~iif~~~~~~~~~l~~~l~~~g~~~~~i~g~~~~~~R~~~~~~F 85 (138)
.-|-|...+..++....+++.+.|+=...-+....++......|+++..+........+...++.|
T Consensus 36 tgs~K~R~a~~~l~~a~~~~~~~vv~assGN~g~a~A~~a~~~g~~~~i~~p~~~~~~~~~~~~~~ 101 (306)
T PF00291_consen 36 TGSFKDRGAYYLLSRAKEKGGRTVVGASSGNHGRALAYAAARLGLKCTIVVPEDVSPEKLKQMRAL 101 (306)
T ss_dssp TSBTHHHHHHHHHHHHHHTTTSEEEEESSSHHHHHHHHHHHHHTCEEEEEEETTSHHHHHHHHHHT
T ss_pred cCCcccccchhhhhhccccccceeeeeccCCceehhhhhhhhccccceeeeccccccccccceeee
Confidence 347899999999988777676666666667788888888888899988877766666777778777
No 278
>cd01522 RHOD_1 Member of the Rhodanese Homology Domain superfamily, subgroup 1. This CD includes the putative rhodanese-related sulfurtransferases of several uncharacterized proteins.
Probab=67.88 E-value=17 Score=22.25 Aligned_cols=38 Identities=8% Similarity=-0.054 Sum_probs=28.9
Q ss_pred hCCCeEEEEeccHHHHHHHHHHHhhcCCe-EEEEeCCCC
Q psy2046 37 KNGHRVLIFSQFIFVLDILGHYMDIRGWR-HLRLDGATQ 74 (138)
Q Consensus 37 ~~~~k~iif~~~~~~~~~l~~~l~~~g~~-~~~i~g~~~ 74 (138)
..++++|++|..-.........|...|++ +..+.|+..
T Consensus 62 ~~~~~ivv~C~~G~rs~~aa~~L~~~G~~~v~~l~gG~~ 100 (117)
T cd01522 62 GKDRPVLLLCRSGNRSIAAAEAAAQAGFTNVYNVLEGFE 100 (117)
T ss_pred CCCCeEEEEcCCCccHHHHHHHHHHCCCCeEEECcCcee
Confidence 45678999998876677788889888986 555777764
No 279
>PF02492 cobW: CobW/HypB/UreG, nucleotide-binding domain; InterPro: IPR003495 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. CobW proteins are generally found proximal to the trimeric cobaltochelatase subunit CobN, which is essential for vitamin B12 (cobalamin) biosynthesis []. They contain a P-loop nucleotide-binding loop in the N-terminal domain and a histidine-rich region in the C-terminal portion suggesting a role in metal binding, possibly as an intermediary between the cobalt transport and chelation systems. CobW might be involved in cobalt reduction leading to cobalt(I) corrinoids. This entry represents CobW-like proteins, including P47K (P31521 from SWISSPROT), a Pseudomonas chlororaphis protein needed for nitrile hydratase expression [], and urease accessory protein UreG, which acts as a chaperone in the activation of urease upon insertion of nickel into the active site [].; PDB: 2WSM_B 1NIJ_A 2HF9_A 2HF8_B.
Probab=66.92 E-value=34 Score=22.64 Aligned_cols=76 Identities=16% Similarity=0.201 Sum_probs=48.1
Q ss_pred cCchHHHHHHHHHHhhhCCCeEEEEeccHHHHHHHHHHHhhcCCeEEEEeCCC----ChHHHHHHHHHHhcCC--CceEE
Q psy2046 21 ESGKLKKLDEILPDLKKNGHRVLIFSQFIFVLDILGHYMDIRGWRHLRLDGAT----QVSSRQELIDEYNRDQ--DLFAF 94 (138)
Q Consensus 21 ~s~K~~~l~~ll~~~~~~~~k~iif~~~~~~~~~l~~~l~~~g~~~~~i~g~~----~~~~R~~~~~~F~~~~--~~~vl 94 (138)
-|+|...+..+++ ....+.++.|..+--.....=.+.++..|.....+.++. -..+=...+.++.... .+..+
T Consensus 10 GsGKTTli~~ll~-~~~~~~~~~vI~ne~g~~~iD~~~l~~~~~~v~~l~~gcicc~~~~~~~~~l~~l~~~~~~~~d~I 88 (178)
T PF02492_consen 10 GSGKTTLINHLLK-RNRQGERVAVIVNEFGEVNIDAELLQEDGVPVVELNNGCICCTLRDDLVEALRRLLREYEERPDRI 88 (178)
T ss_dssp TSSHHHHHHHHHH-HHTTTS-EEEEECSTTSTHHHHHHHHTTT-EEEEECTTTESS-TTS-HHHHHHHHCCCCHGC-SEE
T ss_pred CCCHHHHHHHHHH-HhcCCceeEEEEccccccccchhhhcccceEEEEecCCCcccccHHHHHHHHHHHHHhcCCCcCEE
Confidence 4789999999997 456677887777655555666667777788888888764 1234445666665443 34445
Q ss_pred EEe
Q psy2046 95 LLS 97 (138)
Q Consensus 95 l~~ 97 (138)
++-
T Consensus 89 iIE 91 (178)
T PF02492_consen 89 IIE 91 (178)
T ss_dssp EEE
T ss_pred EEC
Confidence 553
No 280
>PRK13556 azoreductase; Provisional
Probab=66.45 E-value=4.7 Score=27.58 Aligned_cols=31 Identities=26% Similarity=0.239 Sum_probs=23.5
Q ss_pred cCccCEEEEeCCCCC---ccchhHHHHHHhhcCC
Q psy2046 107 LTAADTVIIHDVDFN---PYNDKQAEDRCHRVGQ 137 (138)
Q Consensus 107 l~~~~~vi~~~~~~~---~~~~~Q~~gR~~R~GQ 137 (138)
+..|+.||+..|-|| |.....-++|+.|.|-
T Consensus 87 l~~AD~iVi~~P~yn~~~Pa~LK~~iD~v~~~g~ 120 (208)
T PRK13556 87 FLEADKVVFAFPLWNFTIPAVLHTYIDYLNRAGK 120 (208)
T ss_pred HHHCCEEEEeccccccCCcHHHHHHHHHHhcCCc
Confidence 346777888778776 5577788999998874
No 281
>cd01525 RHOD_Kc Member of the Rhodanese Homology Domain superfamily. Included in this CD are the rhodanese-like domains found C-terminal of the serine/threonine protein kinases catalytic (S_TKc) domain and the Tre-2, BUB2p, Cdc16p (TBC) domain. The putative active site Cys residue is not present in this CD.
Probab=66.23 E-value=11 Score=22.23 Aligned_cols=36 Identities=19% Similarity=0.221 Sum_probs=26.3
Q ss_pred CCeEEEEeccHHHHHHHHHHHhhcCCe-EEEEeCCCC
Q psy2046 39 GHRVLIFSQFIFVLDILGHYMDIRGWR-HLRLDGATQ 74 (138)
Q Consensus 39 ~~k~iif~~~~~~~~~l~~~l~~~g~~-~~~i~g~~~ 74 (138)
++.++++|............|...|+. +..+.|+.+
T Consensus 65 ~~~vv~~c~~g~~s~~~a~~L~~~G~~~v~~l~GG~~ 101 (105)
T cd01525 65 GKIIVIVSHSHKHAALFAAFLVKCGVPRVCILDGGIN 101 (105)
T ss_pred CCeEEEEeCCCccHHHHHHHHHHcCCCCEEEEeCcHH
Confidence 557888887765566677788888886 567888763
No 282
>PRK06553 lipid A biosynthesis lauroyl acyltransferase; Provisional
Probab=65.62 E-value=44 Score=24.38 Aligned_cols=56 Identities=18% Similarity=0.163 Sum_probs=37.7
Q ss_pred HHHHhhhCCCeEEEEeccHHHHHHHHHHHhhcCCeEEEEeCCCChHHHHHHHHHHh
Q psy2046 31 ILPDLKKNGHRVLIFSQFIFVLDILGHYMDIRGWRHLRLDGATQVSSRQELIDEYN 86 (138)
Q Consensus 31 ll~~~~~~~~k~iif~~~~~~~~~l~~~l~~~g~~~~~i~g~~~~~~R~~~~~~F~ 86 (138)
.+.+...+|+.+|+.+.+-...+.+...+...|.+...++-..+...-.+.+.+.+
T Consensus 124 ~l~~a~a~gkgvIllt~H~GnWE~~~~~l~~~~~~~~~vyr~~~n~~~d~~i~~~R 179 (308)
T PRK06553 124 IFERLRDDGKPALIFTAHLGNWELLAIAAAAFGLDVTVLFRPPNNPYAARKVLEAR 179 (308)
T ss_pred HHHHHHhcCCCEEEEeeCchHHHHHHHHHHHcCCceEEEEecCCChHHHHHHHHHH
Confidence 44444566778999988888888888777777777666666555444444444444
No 283
>PF00581 Rhodanese: Rhodanese-like domain This Prosite entry represents a subset of this family.; InterPro: IPR001763 Rhodanese, a sulphurtransferase involved in cyanide detoxification (see IPR001307 from INTERPRO) shares evolutionary relationship with a large family of proteins [], including Cdc25 phosphatase catalytic domain. non-catalytic domains of eukaryotic dual-specificity MAPK-phosphatases. non-catalytic domains of yeast PTP-type MAPK-phosphatases. non-catalytic domains of yeast Ubp4, Ubp5, Ubp7. non-catalytic domains of mammalian Ubp-Y. Drosophila heat shock protein HSP-67BB. several bacterial cold-shock and phage shock proteins. plant senescence associated proteins. catalytic and non-catalytic domains of rhodanese (see IPR001307 from INTERPRO). Rhodanese has an internal duplication. This domain is found as a single copy in other proteins, including phosphatases and ubiquitin C-terminal hydrolases [].; PDB: 2J6P_D 2FSX_A 1UAR_A 1OKG_A 1GMX_A 1GN0_A 3NTD_B 3NTA_B 3NT6_A 1C25_A ....
Probab=65.49 E-value=21 Score=20.99 Aligned_cols=38 Identities=11% Similarity=0.192 Sum_probs=22.1
Q ss_pred hCCCeEEEEeccHHHHHHHHH-----HHhhcCC-eEEEEeCCCC
Q psy2046 37 KNGHRVLIFSQFIFVLDILGH-----YMDIRGW-RHLRLDGATQ 74 (138)
Q Consensus 37 ~~~~k~iif~~~~~~~~~l~~-----~l~~~g~-~~~~i~g~~~ 74 (138)
..+..+|+||........... .|...|+ ++..+.|+..
T Consensus 65 ~~~~~iv~yc~~~~~~~~~~~~~~~~~l~~~g~~~v~~l~GG~~ 108 (113)
T PF00581_consen 65 DKDKDIVFYCSSGWRSGSAAAARVAWILKKLGFKNVYILDGGFE 108 (113)
T ss_dssp TTTSEEEEEESSSCHHHHHHHHHHHHHHHHTTTSSEEEETTHHH
T ss_pred cccccceeeeecccccchhHHHHHHHHHHHcCCCCEEEecChHH
Confidence 345678888833333222222 2777787 6777777653
No 284
>cd01448 TST_Repeat_1 Thiosulfate sulfurtransferase (TST), N-terminal, inactive domain. TST contains 2 copies of the Rhodanese Homology Domain; this is the 1st repeat, which does not contain the catalytically active Cys residue. The role of the 1st repeat is uncertain, but it is believed to be involved in protein interaction.
Probab=65.12 E-value=23 Score=21.62 Aligned_cols=37 Identities=22% Similarity=0.185 Sum_probs=27.2
Q ss_pred CCCeEEEEecc-HHHHHHHHHHHhhcCCe-EEEEeCCCC
Q psy2046 38 NGHRVLIFSQF-IFVLDILGHYMDIRGWR-HLRLDGATQ 74 (138)
Q Consensus 38 ~~~k~iif~~~-~~~~~~l~~~l~~~g~~-~~~i~g~~~ 74 (138)
.+..+++||.. ..........|...|++ +..+.|++.
T Consensus 78 ~~~~vv~~c~~g~~~a~~~~~~l~~~G~~~v~~l~GG~~ 116 (122)
T cd01448 78 NDDTVVVYDDGGGFFAARAWWTLRYFGHENVRVLDGGLQ 116 (122)
T ss_pred CCCEEEEECCCCCccHHHHHHHHHHcCCCCEEEecCCHH
Confidence 46688899987 35566667788888876 677788764
No 285
>PRK04837 ATP-dependent RNA helicase RhlB; Provisional
Probab=64.57 E-value=61 Score=24.68 Aligned_cols=74 Identities=15% Similarity=0.075 Sum_probs=47.4
Q ss_pred CCeEEEEeccHHHHHHHHHHHh----hcCCeEEEEeCCCChHHHHHHHHHHhcCCCceEEEEeccccc-----cccCcCc
Q psy2046 39 GHRVLIFSQFIFVLDILGHYMD----IRGWRHLRLDGATQVSSRQELIDEYNRDQDLFAFLLSTKAGG-----LGINLTA 109 (138)
Q Consensus 39 ~~k~iif~~~~~~~~~l~~~l~----~~g~~~~~i~g~~~~~~R~~~~~~F~~~~~~~vll~~~~~~~-----~Gl~l~~ 109 (138)
+.++||.+++.+-+..+.+.+. ..++.+..++|+.+.....+. .+.+ +.++++++.... ..+++..
T Consensus 83 ~~~~lil~PtreLa~Qi~~~~~~l~~~~~~~v~~~~gg~~~~~~~~~---l~~~--~~IlV~TP~~l~~~l~~~~~~l~~ 157 (423)
T PRK04837 83 QPRALIMAPTRELAVQIHADAEPLAQATGLKLGLAYGGDGYDKQLKV---LESG--VDILIGTTGRLIDYAKQNHINLGA 157 (423)
T ss_pred CceEEEECCcHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHH---hcCC--CCEEEECHHHHHHHHHcCCccccc
Confidence 3579999999988776655443 347888899998875544333 3332 355777665432 3456667
Q ss_pred cCEEEEeC
Q psy2046 110 ADTVIIHD 117 (138)
Q Consensus 110 ~~~vi~~~ 117 (138)
...+|+=+
T Consensus 158 v~~lViDE 165 (423)
T PRK04837 158 IQVVVLDE 165 (423)
T ss_pred ccEEEEec
Confidence 77777643
No 286
>cd01532 4RHOD_Repeat_1 Member of the Rhodanese Homology Domain superfamily, repeat 1. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 1st repeat which does not contain the putative catalytic Cys residue.
Probab=63.74 E-value=19 Score=20.91 Aligned_cols=36 Identities=11% Similarity=0.150 Sum_probs=25.2
Q ss_pred CCeEEEEecc--HHHHHHHHHHHhhcCCe-EEEEeCCCC
Q psy2046 39 GHRVLIFSQF--IFVLDILGHYMDIRGWR-HLRLDGATQ 74 (138)
Q Consensus 39 ~~k~iif~~~--~~~~~~l~~~l~~~g~~-~~~i~g~~~ 74 (138)
+++++++|.. ..........|...|+. +..+.|++.
T Consensus 50 ~~~ivl~c~~G~~~~s~~aa~~L~~~G~~~v~~l~GG~~ 88 (92)
T cd01532 50 DTPIVVYGEGGGEDLAPRAARRLSELGYTDVALLEGGLQ 88 (92)
T ss_pred CCeEEEEeCCCCchHHHHHHHHHHHcCccCEEEccCCHH
Confidence 6689999987 23345666778888875 667777763
No 287
>COG0135 TrpF Phosphoribosylanthranilate isomerase [Amino acid transport and metabolism]
Probab=63.72 E-value=47 Score=23.07 Aligned_cols=57 Identities=18% Similarity=0.186 Sum_probs=39.0
Q ss_pred HHHHHHHHHHhhhCCCeEEEEeccHHHHHHHHHHHhhcCCeEEEEeCCCChHHHHHHHHH
Q psy2046 25 LKKLDEILPDLKKNGHRVLIFSQFIFVLDILGHYMDIRGWRHLRLDGATQVSSRQELIDE 84 (138)
Q Consensus 25 ~~~l~~ll~~~~~~~~k~iif~~~~~~~~~l~~~l~~~g~~~~~i~g~~~~~~R~~~~~~ 84 (138)
...+.++...... -..+-||.+. ..+.+.+.+...++.++.+||..+++.-..+-..
T Consensus 40 ~~~a~~i~~~v~~-~~~VgVf~n~--~~~~i~~i~~~~~ld~VQlHG~e~~~~~~~l~~~ 96 (208)
T COG0135 40 PEQAREIASAVPK-VKVVGVFVNE--SIEEILEIAEELGLDAVQLHGDEDPEYIDQLKEE 96 (208)
T ss_pred HHHHHHHHHhCCC-CCEEEEECCC--CHHHHHHHHHhcCCCEEEECCCCCHHHHHHHHhh
Confidence 4455555554322 3478999974 4567778888888999999999887655554443
No 288
>COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=63.65 E-value=30 Score=25.05 Aligned_cols=82 Identities=13% Similarity=0.159 Sum_probs=47.2
Q ss_pred hHHHHHHHHHHhhhCCCeEEEEeccH-HHHHHHHHHHhhcCCeEEEEeCCCChHHHHHHHHHHhcCCCceEEEEe-cccc
Q psy2046 24 KLKKLDEILPDLKKNGHRVLIFSQFI-FVLDILGHYMDIRGWRHLRLDGATQVSSRQELIDEYNRDQDLFAFLLS-TKAG 101 (138)
Q Consensus 24 K~~~l~~ll~~~~~~~~k~iif~~~~-~~~~~l~~~l~~~g~~~~~i~g~~~~~~R~~~~~~F~~~~~~~vll~~-~~~~ 101 (138)
-...|.+.+.++.+.| .+||||.+. +.++.|.+.+--..-.-.+++|... .+-+.| ++. + +++. ..++
T Consensus 165 N~elLk~~I~~lk~~G-atIifSsH~Me~vEeLCD~llmL~kG~~V~~G~v~-----~ir~~~--Gkk-~-~~ies~~s~ 234 (300)
T COG4152 165 NVELLKDAIFELKEEG-ATIIFSSHRMEHVEELCDRLLMLKKGQTVLYGTVE-----DIRRSF--GKK-R-LVIESDLSL 234 (300)
T ss_pred hHHHHHHHHHHHHhcC-CEEEEecchHHHHHHHhhhhheecCCceEEeccHH-----HHHHhc--CCc-e-EEEeccCch
Confidence 4566777787776666 778888776 4567777776544444557777543 233334 333 2 4444 3333
Q ss_pred ccccCcCccCEEEE
Q psy2046 102 GLGINLTAADTVII 115 (138)
Q Consensus 102 ~~Gl~l~~~~~vi~ 115 (138)
..=-+++..-.+..
T Consensus 235 eeL~~ipgi~~~~~ 248 (300)
T COG4152 235 EELANIPGILKITE 248 (300)
T ss_pred HHHhcCCCceeeee
Confidence 33445666655554
No 289
>PF04007 DUF354: Protein of unknown function (DUF354); InterPro: IPR007152 Members of this family are around 350 amino acids in length. They are found in archaea and some bacteria and have no known function.
Probab=63.55 E-value=60 Score=24.26 Aligned_cols=47 Identities=23% Similarity=0.389 Sum_probs=35.4
Q ss_pred cCchHHHHHHHHHHhhhCCCeEEEEeccHHHHHHHHHHHhhcCCeEEEEe
Q psy2046 21 ESGKLKKLDEILPDLKKNGHRVLIFSQFIFVLDILGHYMDIRGWRHLRLD 70 (138)
Q Consensus 21 ~s~K~~~l~~ll~~~~~~~~k~iif~~~~~~~~~l~~~l~~~g~~~~~i~ 70 (138)
.++=+..+..++.++.+.|..++|.+... +.+.+.|+..|+++..+-
T Consensus 9 ~p~hvhfFk~~I~eL~~~GheV~it~R~~---~~~~~LL~~yg~~y~~iG 55 (335)
T PF04007_consen 9 HPAHVHFFKNIIRELEKRGHEVLITARDK---DETEELLDLYGIDYIVIG 55 (335)
T ss_pred CchHHHHHHHHHHHHHhCCCEEEEEEecc---chHHHHHHHcCCCeEEEc
Confidence 34456677789999989999999999754 456666777788887763
No 290
>cd01444 GlpE_ST GlpE sulfurtransferase (ST) and homologs are members of the Rhodanese Homology Domain superfamily. Unlike other rhodanese sulfurtransferases, GlpE is a single domain protein but indications are that it functions as a dimer. The active site contains a catalytically active cysteine.
Probab=62.47 E-value=16 Score=21.12 Aligned_cols=37 Identities=14% Similarity=0.149 Sum_probs=28.7
Q ss_pred hCCCeEEEEeccHHHHHHHHHHHhhcCCe-EEEEeCCC
Q psy2046 37 KNGHRVLIFSQFIFVLDILGHYMDIRGWR-HLRLDGAT 73 (138)
Q Consensus 37 ~~~~k~iif~~~~~~~~~l~~~l~~~g~~-~~~i~g~~ 73 (138)
..+++++++|............|...|+. +..+.|+.
T Consensus 54 ~~~~~ivv~c~~g~~s~~a~~~l~~~G~~~v~~l~gG~ 91 (96)
T cd01444 54 DRDRPVVVYCYHGNSSAQLAQALREAGFTDVRSLAGGF 91 (96)
T ss_pred CCCCCEEEEeCCCChHHHHHHHHHHcCCceEEEcCCCH
Confidence 45678999998777778888888888885 55677765
No 291
>PF13905 Thioredoxin_8: Thioredoxin-like; PDB: 1FG4_A 1I5G_A 1OC8_B 1O6J_A 1OC9_B 1O81_A 3FKF_A 1O85_A 1O7U_A 1O8W_A ....
Probab=62.13 E-value=28 Score=19.98 Aligned_cols=70 Identities=16% Similarity=0.186 Sum_probs=42.8
Q ss_pred HHHHHHHHhhhCCCeEEEEeccHHHHHHHHHHHhhcCCeEEEEeCCCChHHHHHHHHHHhcCCCceEEEEec
Q psy2046 27 KLDEILPDLKKNGHRVLIFSQFIFVLDILGHYMDIRGWRHLRLDGATQVSSRQELIDEYNRDQDLFAFLLST 98 (138)
Q Consensus 27 ~l~~ll~~~~~~~~k~iif~~~~~~~~~l~~~l~~~g~~~~~i~g~~~~~~R~~~~~~F~~~~~~~vll~~~ 98 (138)
.|.++.+.+.+.+.=.+|+.+.....+...+.+++.+.+...+.-. ...+..+.+.|.-...+..+|+..
T Consensus 22 ~l~~l~~~~~~~~~v~~v~Vs~d~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~l~~~~~i~~iP~~~lld~ 91 (95)
T PF13905_consen 22 KLKELYKKYKKKDDVEFVFVSLDEDEEEWKKFLKKNNFPWYNVPFD--DDNNSELLKKYGINGIPTLVLLDP 91 (95)
T ss_dssp HHHHHHHHHTTTTTEEEEEEE-SSSHHHHHHHHHTCTTSSEEEETT--THHHHHHHHHTT-TSSSEEEEEET
T ss_pred HHHHHHHHhCCCCCEEEEEEEeCCCHHHHHHHHHhcCCCceEEeeC--cchHHHHHHHCCCCcCCEEEEECC
Confidence 3444444433333456777777777888999998885554444322 234778888887666677677653
No 292
>TIGR01136 cysKM cysteine synthases. This model discriminates cysteine synthases (EC 2.5.1.47) (both CysK and CysM) from cystathionine beta-synthase, a protein found primarily in eukaryotes and carrying a C-terminal CBS domain lacking from this protein. Bacterial proteins lacking the CBS domain but otherwise showing resemblamnce to cystathionine beta-synthases and considerable phylogenetic distance from known cysteine synthases were excluded from the seed and score below the trusted cutoff.
Probab=61.71 E-value=59 Score=23.54 Aligned_cols=65 Identities=18% Similarity=0.127 Sum_probs=51.0
Q ss_pred cCchHHHHHHHHHHhhhCCC----eEEEEeccHHHHHHHHHHHhhcCCeEEEEeCCCChHHHHHHHHHH
Q psy2046 21 ESGKLKKLDEILPDLKKNGH----RVLIFSQFIFVLDILGHYMDIRGWRHLRLDGATQVSSRQELIDEY 85 (138)
Q Consensus 21 ~s~K~~~l~~ll~~~~~~~~----k~iif~~~~~~~~~l~~~l~~~g~~~~~i~g~~~~~~R~~~~~~F 85 (138)
-|-|.+....++....+.+. ..+|=+..-+....++-+-+..|+++..+-....+..|...++.|
T Consensus 35 GS~K~R~a~~~~~~a~~~g~~~~g~~vv~aSsGN~g~alA~~a~~~G~~~~i~vp~~~~~~k~~~~~~~ 103 (299)
T TIGR01136 35 GSVKDRIALSMIEDAEKRGLLKPGDTIIEATSGNTGIALAMVAAAKGYKLILTMPETMSLERRKLLRAY 103 (299)
T ss_pred CCccHHHHHHHHHHHHHcCCCCCCCEEEEeCCChHHHHHHHHHHHcCCcEEEEECCCCCHHHHHHHHHc
Confidence 47788888888887766654 456666677778888888888899998888877667788888887
No 293
>PRK12898 secA preprotein translocase subunit SecA; Reviewed
Probab=61.71 E-value=85 Score=25.88 Aligned_cols=59 Identities=10% Similarity=0.007 Sum_probs=38.9
Q ss_pred cCchHHH-HHHHHHHhhhCCCeEEEEeccHHHHHH----HHHHHhhcCCeEEEEeCCCChHHHHH
Q psy2046 21 ESGKLKK-LDEILPDLKKNGHRVLIFSQFIFVLDI----LGHYMDIRGWRHLRLDGATQVSSRQE 80 (138)
Q Consensus 21 ~s~K~~~-l~~ll~~~~~~~~k~iif~~~~~~~~~----l~~~l~~~g~~~~~i~g~~~~~~R~~ 80 (138)
-++|... ++-++.. ...|.+++|.+++..-+.. +...++..|+++..+.|+++..+|..
T Consensus 126 GeGKTla~~lp~~~~-al~G~~v~VvTptreLA~qdae~~~~l~~~lGlsv~~i~gg~~~~~r~~ 189 (656)
T PRK12898 126 GEGKTLTATLPAGTA-ALAGLPVHVITVNDYLAERDAELMRPLYEALGLTVGCVVEDQSPDERRA 189 (656)
T ss_pred CCCcHHHHHHHHHHH-hhcCCeEEEEcCcHHHHHHHHHHHHHHHhhcCCEEEEEeCCCCHHHHHH
Confidence 3455443 3344433 3457899999999866554 44444556999999999998765543
No 294
>PRK10717 cysteine synthase A; Provisional
Probab=61.50 E-value=63 Score=23.79 Aligned_cols=65 Identities=18% Similarity=0.109 Sum_probs=50.7
Q ss_pred cCchHHHHHHHHHHhhhCCC----eEEEEeccHHHHHHHHHHHhhcCCeEEEEeCCCChHHHHHHHHHH
Q psy2046 21 ESGKLKKLDEILPDLKKNGH----RVLIFSQFIFVLDILGHYMDIRGWRHLRLDGATQVSSRQELIDEY 85 (138)
Q Consensus 21 ~s~K~~~l~~ll~~~~~~~~----k~iif~~~~~~~~~l~~~l~~~g~~~~~i~g~~~~~~R~~~~~~F 85 (138)
-|-|.+....++....+.+. ..||=+..-+....++-+-...|+++..+-.......+.+.++.|
T Consensus 41 GS~K~Rga~~~v~~a~~~g~~~~g~~vv~aSsGN~g~alA~~a~~~G~~~~vv~p~~~~~~k~~~~~~~ 109 (330)
T PRK10717 41 GSVKDRAALNIIWDAEKRGLLKPGGTIVEGTAGNTGIGLALVAAARGYKTVIVMPETQSQEKKDLLRAL 109 (330)
T ss_pred CCchHHHHHHHHHHHHHcCCCCCCCEEEEeCCcHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHc
Confidence 56788888888887766654 456666667778888888888999988888877667788888888
No 295
>KOG0331|consensus
Probab=61.19 E-value=84 Score=25.13 Aligned_cols=89 Identities=16% Similarity=0.131 Sum_probs=57.2
Q ss_pred Cch-HHHHHHHHHHhhh--------CCCeEEEEeccHHHHHHHHHHHhhc----CCeEEEEeCCCChHHHHHHHHHHhcC
Q psy2046 22 SGK-LKKLDEILPDLKK--------NGHRVLIFSQFIFVLDILGHYMDIR----GWRHLRLDGATQVSSRQELIDEYNRD 88 (138)
Q Consensus 22 s~K-~~~l~~ll~~~~~--------~~~k~iif~~~~~~~~~l~~~l~~~----g~~~~~i~g~~~~~~R~~~~~~F~~~ 88 (138)
|+| +..++-.+..+.+ .+..++|-+++++-+..+.+.+... ++...+++|+.+.....+.++ .+
T Consensus 139 SGKTLay~lP~i~~l~~~~~~~~~~~~P~vLVL~PTRELA~QV~~~~~~~~~~~~~~~~cvyGG~~~~~Q~~~l~---~g 215 (519)
T KOG0331|consen 139 SGKTLAYLLPAIVHLNNEQGKLSRGDGPIVLVLAPTRELAVQVQAEAREFGKSLRLRSTCVYGGAPKGPQLRDLE---RG 215 (519)
T ss_pred CcchhhhhhHHHHHHHhccccccCCCCCeEEEEcCcHHHHHHHHHHHHHHcCCCCccEEEEeCCCCccHHHHHHh---cC
Confidence 344 4455555555443 2568999999999988888877764 455789999998665555444 23
Q ss_pred CCceEEEEecccc----c-cccCcCccCEEEE
Q psy2046 89 QDLFAFLLSTKAG----G-LGINLTAADTVII 115 (138)
Q Consensus 89 ~~~~vll~~~~~~----~-~Gl~l~~~~~vi~ 115 (138)
..|+++++.-. . --++|.++.++|+
T Consensus 216 --vdiviaTPGRl~d~le~g~~~l~~v~ylVL 245 (519)
T KOG0331|consen 216 --VDVVIATPGRLIDLLEEGSLNLSRVTYLVL 245 (519)
T ss_pred --CcEEEeCChHHHHHHHcCCccccceeEEEe
Confidence 23455544331 1 2356778888887
No 296
>PF13607 Succ_CoA_lig: Succinyl-CoA ligase like flavodoxin domain; PDB: 2CSU_A.
Probab=60.94 E-value=42 Score=21.56 Aligned_cols=62 Identities=18% Similarity=0.101 Sum_probs=36.8
Q ss_pred eEEEEeccHHHHHHHHHHHhhcCCe--EEEEeCCCChHHHHHHHHHHhcCCCceEEEEeccccc
Q psy2046 41 RVLIFSQFIFVLDILGHYMDIRGWR--HLRLDGATQVSSRQELIDEYNRDQDLFAFLLSTKAGG 102 (138)
Q Consensus 41 k~iif~~~~~~~~~l~~~l~~~g~~--~~~i~g~~~~~~R~~~~~~F~~~~~~~vll~~~~~~~ 102 (138)
.+=+++++-.....+..++...|+. +..-.|....-.-.+.++-|.+++..+++++.....+
T Consensus 3 ~valisQSG~~~~~~~~~~~~~g~g~s~~vs~Gn~~dv~~~d~l~~~~~D~~t~~I~ly~E~~~ 66 (138)
T PF13607_consen 3 GVALISQSGALGTAILDWAQDRGIGFSYVVSVGNEADVDFADLLEYLAEDPDTRVIVLYLEGIG 66 (138)
T ss_dssp SEEEEES-HHHHHHHHHHHHHTT-EESEEEE-TT-SSS-HHHHHHHHCT-SS--EEEEEES--S
T ss_pred CEEEEECCHHHHHHHHHHHHHcCCCeeEEEEeCccccCCHHHHHHHHhcCCCCCEEEEEccCCC
Confidence 3557778877777787777776554 4556666655667778888888777777777665544
No 297
>PRK09860 putative alcohol dehydrogenase; Provisional
Probab=60.65 E-value=72 Score=24.18 Aligned_cols=64 Identities=14% Similarity=0.196 Sum_probs=37.1
Q ss_pred CchHHHHHHHHHHhhhCC-CeEEEEecc----HHHHHHHHHHHhhcCCeEEEEeCC---CChHHHHHHHHHHhcC
Q psy2046 22 SGKLKKLDEILPDLKKNG-HRVLIFSQF----IFVLDILGHYMDIRGWRHLRLDGA---TQVSSRQELIDEYNRD 88 (138)
Q Consensus 22 s~K~~~l~~ll~~~~~~~-~k~iif~~~----~~~~~~l~~~l~~~g~~~~~i~g~---~~~~~R~~~~~~F~~~ 88 (138)
.+.+..+-+.++.+ + ++++|.+.. ....+.+.+.|++.|+.+..+.|- -+.+.-.+..+.++..
T Consensus 16 ~g~~~~l~~~~~~~---g~~~~livt~~~~~~~g~~~~v~~~L~~~~i~~~~f~~v~~np~~~~v~~~~~~~~~~ 87 (383)
T PRK09860 16 ADSLTDAMNMMADY---GFTRTLIVTDNMLTKLGMAGDVQKALEERNIFSVIYDGTQPNPTTENVAAGLKLLKEN 87 (383)
T ss_pred cCHHHHHHHHHHhc---CCCEEEEEcCcchhhCccHHHHHHHHHHcCCeEEEeCCCCCCcCHHHHHHHHHHHHHc
Confidence 34556565555443 3 466666543 123567777787778777666653 3445555666666644
No 298
>PRK05583 ribosomal protein L7Ae family protein; Provisional
Probab=60.37 E-value=36 Score=20.71 Aligned_cols=68 Identities=9% Similarity=0.036 Sum_probs=40.7
Q ss_pred HHHHHHHhhcCCeEEEEeCCCChHHHHHHHHHHhcCCCceEEEEeccccccccCcCccCEEEEeCCCC
Q psy2046 53 DILGHYMDIRGWRHLRLDGATQVSSRQELIDEYNRDQDLFAFLLSTKAGGLGINLTAADTVIIHDVDF 120 (138)
Q Consensus 53 ~~l~~~l~~~g~~~~~i~g~~~~~~R~~~~~~F~~~~~~~vll~~~~~~~~Gl~l~~~~~vi~~~~~~ 120 (138)
+.+.+.++......+.+-.+.++..|.++.+.-+....+.+.+.+..-.|.-+.-+...++.+.|..+
T Consensus 23 ~~v~~aik~gk~~lVI~A~D~s~~~kkki~~~~~~~~vp~~~~~t~~eLg~a~Gk~~~~~iai~d~g~ 90 (104)
T PRK05583 23 NKCEEAIKKKKVYLIIISNDISENSKNKFKNYCNKYNIPYIEGYSKEELGNAIGRDEIKILGVKDKNM 90 (104)
T ss_pred HHHHHHHHcCCceEEEEeCCCCHhHHHHHHHHHHHcCCCEEEecCHHHHHHHhCCCCeEEEEEeChHH
Confidence 34455666556677778888888888888775443333433444444455555544556666666654
No 299
>cd05212 NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding domain of methylene-tetrahydrofolate dehydrogenase and methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NAD(P) binding domains of methylene-tetrahydrofolate dehydrogenase (m-THF DH) and m-THF DH/cyclohydrolase bifunctional enzymes (m-THF DH/cyclohydrolase). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional
Probab=60.24 E-value=43 Score=21.55 Aligned_cols=51 Identities=22% Similarity=0.154 Sum_probs=41.4
Q ss_pred hHHHHHHHHHHhh--hCCCeEEEEeccHHHHHHHHHHHhhcCCeEEEEeCCCC
Q psy2046 24 KLKKLDEILPDLK--KNGHRVLIFSQFIFVLDILGHYMDIRGWRHLRLDGATQ 74 (138)
Q Consensus 24 K~~~l~~ll~~~~--~~~~k~iif~~~~~~~~~l~~~l~~~g~~~~~i~g~~~ 74 (138)
-...+.++++... -+|++++|+..+.....-++..|...|..+...|..+.
T Consensus 11 t~~a~~~ll~~~~~~~~gk~v~VvGrs~~vG~pla~lL~~~gatV~~~~~~t~ 63 (140)
T cd05212 11 VAKAVKELLNKEGVRLDGKKVLVVGRSGIVGAPLQCLLQRDGATVYSCDWKTI 63 (140)
T ss_pred HHHHHHHHHHHcCCCCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEeCCCCc
Confidence 4566777777642 24789999999999999999999999999888887653
No 300
>PRK11192 ATP-dependent RNA helicase SrmB; Provisional
Probab=60.03 E-value=75 Score=24.23 Aligned_cols=73 Identities=11% Similarity=0.089 Sum_probs=46.2
Q ss_pred CeEEEEeccHHHHHHHHHHH----hhcCCeEEEEeCCCChHHHHHHHHHHhcCCCceEEEEeccccc-----cccCcCcc
Q psy2046 40 HRVLIFSQFIFVLDILGHYM----DIRGWRHLRLDGATQVSSRQELIDEYNRDQDLFAFLLSTKAGG-----LGINLTAA 110 (138)
Q Consensus 40 ~k~iif~~~~~~~~~l~~~l----~~~g~~~~~i~g~~~~~~R~~~~~~F~~~~~~~vll~~~~~~~-----~Gl~l~~~ 110 (138)
.+++|.+++.+-+..+.+.+ +..++++..++|+.+...+...+. . ...++++++.... ..+++...
T Consensus 74 ~~~lil~Pt~eLa~Q~~~~~~~l~~~~~~~v~~~~gg~~~~~~~~~l~---~--~~~IlV~Tp~rl~~~~~~~~~~~~~v 148 (434)
T PRK11192 74 PRILILTPTRELAMQVADQARELAKHTHLDIATITGGVAYMNHAEVFS---E--NQDIVVATPGRLLQYIKEENFDCRAV 148 (434)
T ss_pred ceEEEECCcHHHHHHHHHHHHHHHccCCcEEEEEECCCCHHHHHHHhc---C--CCCEEEEChHHHHHHHHcCCcCcccC
Confidence 48999999987766555444 345788999999988766554443 2 2345666553321 34556666
Q ss_pred CEEEEeC
Q psy2046 111 DTVIIHD 117 (138)
Q Consensus 111 ~~vi~~~ 117 (138)
..+|+=+
T Consensus 149 ~~lViDE 155 (434)
T PRK11192 149 ETLILDE 155 (434)
T ss_pred CEEEEEC
Confidence 7776633
No 301
>TIGR01139 cysK cysteine synthase A. This model distinguishes cysteine synthase A (CysK) from cysteine synthase B (CysM). CysM differs in having a broader specificity that also allows the use of thiosulfate to produce cysteine thiosulfonate.
Probab=59.80 E-value=64 Score=23.32 Aligned_cols=65 Identities=18% Similarity=0.131 Sum_probs=49.8
Q ss_pred cCchHHHHHHHHHHhhhCCC----eEEEEeccHHHHHHHHHHHhhcCCeEEEEeCCCChHHHHHHHHHH
Q psy2046 21 ESGKLKKLDEILPDLKKNGH----RVLIFSQFIFVLDILGHYMDIRGWRHLRLDGATQVSSRQELIDEY 85 (138)
Q Consensus 21 ~s~K~~~l~~ll~~~~~~~~----k~iif~~~~~~~~~l~~~l~~~g~~~~~i~g~~~~~~R~~~~~~F 85 (138)
-|-|.+....++....+.+. ..+|=+..-+....++-+-...|+++..+-.......+.+.++.|
T Consensus 34 GS~K~R~a~~~l~~a~~~g~~~~g~~vv~aSsGN~g~alA~~a~~~Gl~~~i~vp~~~~~~k~~~~~~~ 102 (298)
T TIGR01139 34 GSVKDRIALNMIWDAEKRGLLKPGKTIVEPTSGNTGIALAMVAAARGYKLILTMPETMSIERRKLLKAY 102 (298)
T ss_pred CcchHHHHHHHHHHHHHcCCCCCCCEEEEeCCChhHHHHHHHHHHcCCeEEEEeCCccCHHHHHHHHHc
Confidence 57798888888887766654 456666666777888888888899988887776666778888887
No 302
>PLN02160 thiosulfate sulfurtransferase
Probab=59.79 E-value=30 Score=21.98 Aligned_cols=38 Identities=11% Similarity=-0.060 Sum_probs=30.2
Q ss_pred hCCCeEEEEeccHHHHHHHHHHHhhcCCe-EEEEeCCCC
Q psy2046 37 KNGHRVLIFSQFIFVLDILGHYMDIRGWR-HLRLDGATQ 74 (138)
Q Consensus 37 ~~~~k~iif~~~~~~~~~l~~~l~~~g~~-~~~i~g~~~ 74 (138)
..+++++++|..-.........|...|+. +..+.|++.
T Consensus 79 ~~~~~IivyC~sG~RS~~Aa~~L~~~G~~~v~~l~GG~~ 117 (136)
T PLN02160 79 NPADDILVGCQSGARSLKATTELVAAGYKKVRNKGGGYL 117 (136)
T ss_pred CCCCcEEEECCCcHHHHHHHHHHHHcCCCCeeecCCcHH
Confidence 45678999999888888888889888986 566778764
No 303
>PRK08943 lipid A biosynthesis (KDO)2-(lauroyl)-lipid IVA acyltransferase; Validated
Probab=59.70 E-value=67 Score=23.51 Aligned_cols=57 Identities=18% Similarity=0.214 Sum_probs=36.7
Q ss_pred HHHHhhhCCCeEEEEeccHHHHHHHHHHHhhcCCeEEEEeCCCChHHHHHHHHHHhc
Q psy2046 31 ILPDLKKNGHRVLIFSQFIFVLDILGHYMDIRGWRHLRLDGATQVSSRQELIDEYNR 87 (138)
Q Consensus 31 ll~~~~~~~~k~iif~~~~~~~~~l~~~l~~~g~~~~~i~g~~~~~~R~~~~~~F~~ 87 (138)
.+.+...+++.+|+.+.+-...+.+..++...|.+...++-..+...-++.+.+.+.
T Consensus 122 ~l~~a~~~gkgvI~~t~H~gnwE~~~~~~~~~~~~~~~vyr~~~n~~~d~~~~~~R~ 178 (314)
T PRK08943 122 ILEEARANGENVIFLVPHGWAIDIPAMLLASQGQPMAAMFHNQRNPLFDWLWNRVRR 178 (314)
T ss_pred HHHHHHhCCCCEEEEEechhHHHHHHHHHHhcCCCccEEEeCCCCHHHHHHHHHHHh
Confidence 344445567778888888776677777777777776666665554444555555544
No 304
>PRK10590 ATP-dependent RNA helicase RhlE; Provisional
Probab=59.61 E-value=80 Score=24.41 Aligned_cols=91 Identities=13% Similarity=0.150 Sum_probs=53.8
Q ss_pred cCchHHH-HHHHHHHhhhC--------CCeEEEEeccHHHHHHHHHHHhh----cCCeEEEEeCCCChHHHHHHHHHHhc
Q psy2046 21 ESGKLKK-LDEILPDLKKN--------GHRVLIFSQFIFVLDILGHYMDI----RGWRHLRLDGATQVSSRQELIDEYNR 87 (138)
Q Consensus 21 ~s~K~~~-l~~ll~~~~~~--------~~k~iif~~~~~~~~~l~~~l~~----~g~~~~~i~g~~~~~~R~~~~~~F~~ 87 (138)
-++|... ++-++..+... ..++||.+++.+-+..+.+.+.. .++....++|+.+...... .++.
T Consensus 48 GsGKTla~~lpil~~l~~~~~~~~~~~~~~aLil~PtreLa~Qi~~~~~~~~~~~~~~~~~~~gg~~~~~~~~---~l~~ 124 (456)
T PRK10590 48 GTGKTAGFTLPLLQHLITRQPHAKGRRPVRALILTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMM---KLRG 124 (456)
T ss_pred CCcHHHHHHHHHHHHhhhcccccccCCCceEEEEeCcHHHHHHHHHHHHHHhccCCCEEEEEECCcCHHHHHH---HHcC
Confidence 4577543 44444443221 13799999999877666665554 3677888999988655432 2332
Q ss_pred CCCceEEEEecccc-----ccccCcCccCEEEEe
Q psy2046 88 DQDLFAFLLSTKAG-----GLGINLTAADTVIIH 116 (138)
Q Consensus 88 ~~~~~vll~~~~~~-----~~Gl~l~~~~~vi~~ 116 (138)
.+.++++++... ...+++.....+|+=
T Consensus 125 --~~~IiV~TP~rL~~~~~~~~~~l~~v~~lViD 156 (456)
T PRK10590 125 --GVDVLVATPGRLLDLEHQNAVKLDQVEILVLD 156 (456)
T ss_pred --CCcEEEEChHHHHHHHHcCCcccccceEEEee
Confidence 334566665433 234566677777663
No 305
>cd01562 Thr-dehyd Threonine dehydratase: The first step in amino acid degradation is the removal of nitrogen. Although the nitrogen atoms of most amino acids are transferred to alpha-ketoglutarate before removal, the alpha-amino group of threonine can be directly converted into NH4+. The direct deamination is catalyzed by threonine dehydratase, in which pyridoxal phosphate (PLP) is the prosthetic group. Threonine dehydratase is widely distributed in all three major phylogenetic divisions.
Probab=59.51 E-value=62 Score=23.31 Aligned_cols=66 Identities=11% Similarity=-0.001 Sum_probs=46.7
Q ss_pred ccCchHHHHHHHHHHhhhCC-CeEEEEeccHHHHHHHHHHHhhcCCeEEEEeCCCChHHHHHHHHHH
Q psy2046 20 VESGKLKKLDEILPDLKKNG-HRVLIFSQFIFVLDILGHYMDIRGWRHLRLDGATQVSSRQELIDEY 85 (138)
Q Consensus 20 ~~s~K~~~l~~ll~~~~~~~-~k~iif~~~~~~~~~l~~~l~~~g~~~~~i~g~~~~~~R~~~~~~F 85 (138)
.-|-|......++....+.+ .+.||-+..-+....++.+....|+++..+-......++.+.++.|
T Consensus 44 tgS~Kdr~a~~~l~~~~~~~~~~~iv~~ssGN~g~alA~~a~~~G~~~~ivvp~~~~~~k~~~l~~~ 110 (304)
T cd01562 44 TGSFKIRGAYNKLLSLSEEERAKGVVAASAGNHAQGVAYAAKLLGIPATIVMPETAPAAKVDATRAY 110 (304)
T ss_pred cCCcHHHhHHHHHHhcCHhhcCCcEEEECCCHHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHHc
Confidence 45678787777777655433 3334444456778888888888999988777766667777888888
No 306
>PRK03692 putative UDP-N-acetyl-D-mannosaminuronic acid transferase; Provisional
Probab=59.37 E-value=61 Score=23.00 Aligned_cols=73 Identities=14% Similarity=0.120 Sum_probs=49.6
Q ss_pred HHHHHHHHHhhhCCCeEEEEeccHHHHHHHHHHHhhc-CCeEE-EEeCCCChHHHHHHHHHHhcCCCceEEEEecc
Q psy2046 26 KKLDEILPDLKKNGHRVLIFSQFIFVLDILGHYMDIR-GWRHL-RLDGATQVSSRQELIDEYNRDQDLFAFLLSTK 99 (138)
Q Consensus 26 ~~l~~ll~~~~~~~~k~iif~~~~~~~~~l~~~l~~~-g~~~~-~i~g~~~~~~R~~~~~~F~~~~~~~vll~~~~ 99 (138)
+.+.++++...+.+.++-++-.....++.+.+.|++. |+.++ ..+|-.++++.+++++.-+..+ +.++++...
T Consensus 92 dl~~~ll~~~~~~~~~v~llG~~~~v~~~a~~~l~~~y~l~i~g~~~Gyf~~~e~~~i~~~I~~s~-~dil~VglG 166 (243)
T PRK03692 92 DLWEALMARAGKEGTPVFLVGGKPEVLAQTEAKLRTQWNVNIVGSQDGYFTPEQRQALFERIHASG-AKIVTVAMG 166 (243)
T ss_pred HHHHHHHHHHHhcCCeEEEECCCHHHHHHHHHHHHHHhCCEEEEEeCCCCCHHHHHHHHHHHHhcC-CCEEEEECC
Confidence 3444555554556778989999899999999988664 66654 4567777777777788777543 445665443
No 307
>PF12683 DUF3798: Protein of unknown function (DUF3798); InterPro: IPR024258 This entry represents functionally uncharacterised proteins that are found in bacteria. They are typically between 247 and 417 amino acids in length. Most of the proteins in this entry have an N-terminal lipoprotein attachment site. These proteins have distant similarity to periplasmic ligand binding families suggesting that this family has a similar role.; PDB: 3QI7_A.
Probab=59.29 E-value=66 Score=23.36 Aligned_cols=99 Identities=13% Similarity=0.087 Sum_probs=54.6
Q ss_pred HHHHHHHHHHhhhC-CCeEEEEeccHHHHHHHHHHHhhcCCeEEEEeCCCChHHHHHHHHHHhcCCCceEEEEecccccc
Q psy2046 25 LKKLDEILPDLKKN-GHRVLIFSQFIFVLDILGHYMDIRGWRHLRLDGATQVSSRQELIDEYNRDQDLFAFLLSTKAGGL 103 (138)
Q Consensus 25 ~~~l~~ll~~~~~~-~~k~iif~~~~~~~~~l~~~l~~~g~~~~~i~g~~~~~~R~~~~~~F~~~~~~~vll~~~~~~~~ 103 (138)
.+....-+..+... .-|.||+++-..-.-.-.+.+++..-....+.|... +=...+++.- . |.++++...+
T Consensus 47 ~EttIskI~~lAdDp~mKaIVv~q~vpGt~~af~kIkekRpDIl~ia~~~~--EDp~~i~~~a---D---i~~~~D~~~~ 118 (275)
T PF12683_consen 47 QETTISKIVSLADDPDMKAIVVSQAVPGTAEAFRKIKEKRPDILLIAGEPH--EDPEVISSAA---D---IVVNPDEISR 118 (275)
T ss_dssp HHHHHHHHHGGGG-TTEEEEEEE-SS---HHHHHHHHHH-TTSEEEESS----S-HHHHHHHS---S---EEEE--HHHH
T ss_pred HHHHHHHHHHhccCCCccEEEEeCCCcchHHHHHHHHhcCCCeEEEcCCCc--CCHHHHhhcc---C---eEeccchhhc
Confidence 33333333333333 458999998876655555666666666778888654 2334555541 1 6677888888
Q ss_pred ccCcC------ccCEEEEeCCCCCccchhHHHHH
Q psy2046 104 GINLT------AADTVIIHDVDFNPYNDKQAEDR 131 (138)
Q Consensus 104 Gl~l~------~~~~vi~~~~~~~~~~~~Q~~gR 131 (138)
|..+. +|...|++++|-+......+.-|
T Consensus 119 G~~i~~~Ak~mGAktFVh~sfprhms~~~l~~Rr 152 (275)
T PF12683_consen 119 GYTIVWAAKKMGAKTFVHYSFPRHMSYELLARRR 152 (275)
T ss_dssp HHHHHHHHHHTT-S-EEEEEETTGGGSHHHHHHH
T ss_pred cHHHHHHHHHcCCceEEEEechhhcchHHHHHHH
Confidence 88765 78889999888776655544433
No 308
>PRK08329 threonine synthase; Validated
Probab=58.76 E-value=74 Score=23.72 Aligned_cols=65 Identities=14% Similarity=0.029 Sum_probs=52.2
Q ss_pred cCchHHHHHHHHHHhhhCCCeEEEEeccHHHHHHHHHHHhhcCCeEEEEeCCCChHHHHHHHHHH
Q psy2046 21 ESGKLKKLDEILPDLKKNGHRVLIFSQFIFVLDILGHYMDIRGWRHLRLDGATQVSSRQELIDEY 85 (138)
Q Consensus 21 ~s~K~~~l~~ll~~~~~~~~k~iif~~~~~~~~~l~~~l~~~g~~~~~i~g~~~~~~R~~~~~~F 85 (138)
-|-|.+...-++....+.+.+.||-+..-+....++.+-...|+++..+-.......+...++.|
T Consensus 85 GSfKdRga~~~i~~a~~~g~~~vv~aSsGN~g~alA~~aa~~G~~~~v~vp~~~~~~k~~~~~~~ 149 (347)
T PRK08329 85 GSFKDRGTYVTVAKLKEEGINEVVIDSSGNAALSLALYSLSEGIKVHVFVSYNASKEKISLLSRL 149 (347)
T ss_pred cCCHHHHHHHHHHHHHHcCCCEEEEECCCcHHHHHHHHHHHcCCcEEEEECCCChHHHHHHHHHc
Confidence 56788888888877777777777777777888888888888999988777766667777888887
No 309
>PF00702 Hydrolase: haloacid dehalogenase-like hydrolase; InterPro: IPR005834 This group of hydrolase enzymes is structurally different from the alpha/beta hydrolase family (abhydrolase). This group includes L-2-haloacid dehalogenase, epoxide hydrolases and phosphatases. The structure consists of two domains. One is an inserted four helix bundle, which is the least well conserved region of the alignment, between residues 16 and 96 of HAD1_PSESP. The rest of the fold is composed of the core alpha/beta domain.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 1TE2_A 3NAL_A 3NAM_A 3NAN_A 3A1D_B 3J09_A 3J08_A 2B8E_C 3A1E_A 2VOY_J ....
Probab=58.54 E-value=52 Score=21.86 Aligned_cols=60 Identities=17% Similarity=0.161 Sum_probs=39.5
Q ss_pred HHHHHHHhhhCCCeEEEEec-cHHHHHHHHHHHhhcCCeEEEEeCCC--ChHHH--HHHHHHHhcCCC
Q psy2046 28 LDEILPDLKKNGHRVLIFSQ-FIFVLDILGHYMDIRGWRHLRLDGAT--QVSSR--QELIDEYNRDQD 90 (138)
Q Consensus 28 l~~ll~~~~~~~~k~iif~~-~~~~~~~l~~~l~~~g~~~~~i~g~~--~~~~R--~~~~~~F~~~~~ 90 (138)
+.++|..+.+.|-++.+.+. .......+. +..|+.-..+++.. ++..+ .+++++++..+.
T Consensus 132 ~~~~l~~L~~~Gi~~~i~TGD~~~~a~~~~---~~lgi~~~~v~a~~~~kP~~k~~~~~i~~l~~~~~ 196 (215)
T PF00702_consen 132 AKEALQELKEAGIKVAILTGDNESTASAIA---KQLGIFDSIVFARVIGKPEPKIFLRIIKELQVKPG 196 (215)
T ss_dssp HHHHHHHHHHTTEEEEEEESSEHHHHHHHH---HHTTSCSEEEEESHETTTHHHHHHHHHHHHTCTGG
T ss_pred hhhhhhhhhccCcceeeeeccccccccccc---cccccccccccccccccccchhHHHHHHHHhcCCC
Confidence 45566666677777777774 334344444 44577656677777 88888 899999884433
No 310
>PRK05320 rhodanese superfamily protein; Provisional
Probab=58.27 E-value=37 Score=24.28 Aligned_cols=37 Identities=19% Similarity=0.152 Sum_probs=31.4
Q ss_pred CCCeEEEEeccHHHHHHHHHHHhhcCCe-EEEEeCCCC
Q psy2046 38 NGHRVLIFSQFIFVLDILGHYMDIRGWR-HLRLDGATQ 74 (138)
Q Consensus 38 ~~~k~iif~~~~~~~~~l~~~l~~~g~~-~~~i~g~~~ 74 (138)
.++++++||..-........+|+..|+. +..+.|++.
T Consensus 174 kdk~IvvyC~~G~Rs~~Aa~~L~~~Gf~~V~~L~GGi~ 211 (257)
T PRK05320 174 AGKTVVSFCTGGIRCEKAAIHMQEVGIDNVYQLEGGIL 211 (257)
T ss_pred CCCeEEEECCCCHHHHHHHHHHHHcCCcceEEeccCHH
Confidence 4678999999988888889999999996 778899875
No 311
>TIGR01137 cysta_beta cystathionine beta-synthase. Members of this family closely resemble cysteine synthase but contain an additional C-terminal CBS domain. The function of any bacterial member included in this family is proposed but not proven.
Probab=58.02 E-value=84 Score=24.16 Aligned_cols=66 Identities=12% Similarity=0.058 Sum_probs=51.3
Q ss_pred ccCchHHHHHHHHHHhhhCCC----eEEEEeccHHHHHHHHHHHhhcCCeEEEEeCCCChHHHHHHHHHH
Q psy2046 20 VESGKLKKLDEILPDLKKNGH----RVLIFSQFIFVLDILGHYMDIRGWRHLRLDGATQVSSRQELIDEY 85 (138)
Q Consensus 20 ~~s~K~~~l~~ll~~~~~~~~----k~iif~~~~~~~~~l~~~l~~~g~~~~~i~g~~~~~~R~~~~~~F 85 (138)
.-|-|.+....++.+..+.+. +.||=+..-+....++-+-...|+++..+-......++...++.|
T Consensus 38 tGS~K~R~a~~~l~~a~~~g~~~~g~~vv~~ssGN~g~alA~~a~~~G~~~~iv~p~~~~~~k~~~~~~~ 107 (454)
T TIGR01137 38 GGSVKDRIALRMIEDAEASGRLKPGDTIIEPTSGNTGIGLALVAAIKGYKCIIVLPEKMSNEKVDVLKAL 107 (454)
T ss_pred CcchHHHHHHHHHHHHHHcCCCCCCCEEEEeCCcHHHHHHHHHHHHcCCeEEEEeCCCcCHHHHHHHHHC
Confidence 457799988888887766554 456666677888888888888999988877766667788888888
No 312
>KOG0951|consensus
Probab=57.96 E-value=1e+02 Score=27.79 Aligned_cols=102 Identities=11% Similarity=0.099 Sum_probs=58.8
Q ss_pred HHHhhhCCCeEEEEeccHHHHHHHHHHHhh----------------------cCCeEEEEeCCCChHHHHHHHHHHhcCC
Q psy2046 32 LPDLKKNGHRVLIFSQFIFVLDILGHYMDI----------------------RGWRHLRLDGATQVSSRQELIDEYNRDQ 89 (138)
Q Consensus 32 l~~~~~~~~k~iif~~~~~~~~~l~~~l~~----------------------~g~~~~~i~g~~~~~~R~~~~~~F~~~~ 89 (138)
+.....++++.+||.+..+.+..++..|-. ...+...-|-+++..+..-+-.-|..|
T Consensus 1352 i~~~a~~~k~~~vf~p~rk~~~~~a~~~~~~s~~~~~~~l~~~~e~~~~~l~e~l~~gvg~e~~s~~d~~iv~~l~e~g- 1430 (1674)
T KOG0951|consen 1352 IVRHAGNRKPAIVFLPTRKHARLVAVDLVTFSHADEPDYLLSELEECDETLRESLKHGVGHEGLSSNDQEIVQQLFEAG- 1430 (1674)
T ss_pred HHHHhcCCCCeEEEeccchhhhhhhhccchhhccCcHHHHHHHHhcchHhhhhcccccccccccCcchHHHHHHHHhcC-
Confidence 333445678899999988764443322211 011222225566666666666667665
Q ss_pred CceEEEEeccccccccCcCccCEEEEeCC-----------CCCccchhHHHHHHhhcCC
Q psy2046 90 DLFAFLLSTKAGGLGINLTAADTVIIHDV-----------DFNPYNDKQAEDRCHRVGQ 137 (138)
Q Consensus 90 ~~~vll~~~~~~~~Gl~l~~~~~vi~~~~-----------~~~~~~~~Q~~gR~~R~GQ 137 (138)
.+.|++++.+ -.|..+. ++-||.++. ++.-+...|..|+++|.|+
T Consensus 1431 ~i~v~v~s~~--~~~~~~~-~~lVvvmgt~~ydg~e~~~~~y~i~~ll~m~G~a~~~~k 1486 (1674)
T KOG0951|consen 1431 AIQVCVMSRD--CYGTKLK-AHLVVVMGTQYYDGKEHSYEDYPIAELLQMVGLASGAGK 1486 (1674)
T ss_pred cEEEEEEEcc--ccccccc-ceEEEEecceeecccccccccCchhHHHHHhhhhcCCcc
Confidence 6778888866 3444432 444444322 2334456699999999885
No 313
>PRK11784 tRNA 2-selenouridine synthase; Provisional
Probab=57.26 E-value=80 Score=23.69 Aligned_cols=48 Identities=19% Similarity=0.227 Sum_probs=35.3
Q ss_pred CCCeEEEEec-cHHHHHHHHHHHhhcCCeEEEEeCCCChHHHHHHHHHHh
Q psy2046 38 NGHRVLIFSQ-FIFVLDILGHYMDIRGWRHLRLDGATQVSSRQELIDEYN 86 (138)
Q Consensus 38 ~~~k~iif~~-~~~~~~~l~~~l~~~g~~~~~i~g~~~~~~R~~~~~~F~ 86 (138)
.+.+++|||. .-.........|...|+.+..+.|+... -|...++.+.
T Consensus 87 ~~~~ivvyC~rgG~RS~~aa~~L~~~G~~v~~L~GG~~a-wr~~~~~~~~ 135 (345)
T PRK11784 87 ANPRGLLYCWRGGLRSGSVQQWLKEAGIDVPRLEGGYKA-YRRFVIDTLE 135 (345)
T ss_pred CCCeEEEEECCCChHHHHHHHHHHHcCCCcEEEcCCHHH-HHHhhHHHHh
Confidence 5678999995 3344667778888899988899998864 4555656665
No 314
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=57.03 E-value=35 Score=22.91 Aligned_cols=40 Identities=23% Similarity=0.358 Sum_probs=33.3
Q ss_pred CchHHHHHHHHHHh--------hhCCCeEEEEeccHHHHHHHHHHHhh
Q psy2046 22 SGKLKKLDEILPDL--------KKNGHRVLIFSQFIFVLDILGHYMDI 61 (138)
Q Consensus 22 s~K~~~l~~ll~~~--------~~~~~k~iif~~~~~~~~~l~~~l~~ 61 (138)
++|-..+..++..+ ...+.++++-+++...++.+...|.+
T Consensus 28 TGKT~~l~~~i~~~~~~~~~~~~~~~~~il~~~~sN~avd~~~~~l~~ 75 (236)
T PF13086_consen 28 TGKTTTLASIIAQLLQRFKSRSADRGKKILVVSPSNAAVDNILERLKK 75 (236)
T ss_dssp SSHHHHHHHHHHHH-------HCCCSS-EEEEESSHHHHHHHHHHHHC
T ss_pred CChHHHHHHHHHHhccchhhhhhhccccceeecCCchhHHHHHHHHHh
Confidence 58999999999887 45678999999999999988888876
No 315
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=57.01 E-value=82 Score=23.69 Aligned_cols=77 Identities=18% Similarity=0.184 Sum_probs=53.5
Q ss_pred cCchHHHHHHHHHHhhhCCCeEEEEeccH---HHHHHHHHHHhhcCCeEEEE-eCCCChHHHHHHHHHHhcCCCceEEEE
Q psy2046 21 ESGKLKKLDEILPDLKKNGHRVLIFSQFI---FVLDILGHYMDIRGWRHLRL-DGATQVSSRQELIDEYNRDQDLFAFLL 96 (138)
Q Consensus 21 ~s~K~~~l~~ll~~~~~~~~k~iif~~~~---~~~~~l~~~l~~~g~~~~~i-~g~~~~~~R~~~~~~F~~~~~~~vll~ 96 (138)
-.+|...+.++-..+..+|.++++-..-. ...+.|+.|=++.|+++... .|+.|.+---..++.-+.... -++|+
T Consensus 149 G~GKTTTIaKLA~~l~~~g~~VllaA~DTFRAaAiEQL~~w~er~gv~vI~~~~G~DpAaVafDAi~~Akar~~-Dvvli 227 (340)
T COG0552 149 GVGKTTTIAKLAKYLKQQGKSVLLAAGDTFRAAAIEQLEVWGERLGVPVISGKEGADPAAVAFDAIQAAKARGI-DVVLI 227 (340)
T ss_pred CCchHhHHHHHHHHHHHCCCeEEEEecchHHHHHHHHHHHHHHHhCCeEEccCCCCCcHHHHHHHHHHHHHcCC-CEEEE
Confidence 35788888888887788888887776543 23667888888888887663 477776666667776665533 35665
Q ss_pred ec
Q psy2046 97 ST 98 (138)
Q Consensus 97 ~~ 98 (138)
.|
T Consensus 228 DT 229 (340)
T COG0552 228 DT 229 (340)
T ss_pred eC
Confidence 43
No 316
>COG2961 ComJ Protein involved in catabolism of external DNA [General function prediction only]
Probab=56.99 E-value=72 Score=23.06 Aligned_cols=88 Identities=9% Similarity=0.003 Sum_probs=49.1
Q ss_pred CCeEEEEeccH--------HHHHHHHHHHhhcCC-eEEEEeCCCChHHHHHHHHHHhcCCCceEEEE----ecccccccc
Q psy2046 39 GHRVLIFSQFI--------FVLDILGHYMDIRGW-RHLRLDGATQVSSRQELIDEYNRDQDLFAFLL----STKAGGLGI 105 (138)
Q Consensus 39 ~~k~iif~~~~--------~~~~~l~~~l~~~g~-~~~~i~g~~~~~~R~~~~~~F~~~~~~~vll~----~~~~~~~Gl 105 (138)
+.+.+|+.+-+ ..++.|.+.+++..- .|+..+-=....+-.+..++.+.-...+++.+ -++....|+
T Consensus 155 erRglVLIDPPfE~~~eY~rvv~~l~~~~kRf~~g~yaiWYPik~r~~~~~f~~~L~~~~i~kiL~iEL~VrP~~d~~gm 234 (279)
T COG2961 155 ERRGLVLIDPPFELKDEYQRVVEALAEAYKRFATGTYAIWYPIKDRRQIRRFLRALEALGIRKILQIELAVRPDSDPRGM 234 (279)
T ss_pred CcceEEEeCCCcccccHHHHHHHHHHHHHHhhcCceEEEEEeecchHHHHHHHHHHhhcCccceeeeEEEecCCCCCCCc
Confidence 45777776533 445666666665422 34444333333344444444444334344443 334445565
Q ss_pred CcCccCEEEEeCCCCCccchhHHH
Q psy2046 106 NLTAADTVIIHDVDFNPYNDKQAE 129 (138)
Q Consensus 106 ~l~~~~~vi~~~~~~~~~~~~Q~~ 129 (138)
+ ++-+|.++|||...+..|..
T Consensus 235 ~---gSGMivINPPwtle~ql~~~ 255 (279)
T COG2961 235 N---GSGMIVINPPWTLEQQLRAA 255 (279)
T ss_pred c---ceeEEEECCCccHHHHHHHH
Confidence 5 67788999999988777654
No 317
>KOG1132|consensus
Probab=56.81 E-value=1.3e+02 Score=25.87 Aligned_cols=81 Identities=19% Similarity=0.237 Sum_probs=47.6
Q ss_pred CCeEEEEeccHHHHHHHHHHHhhc-------CCeEEEEeCCCChHHHHHHHHHHhcC----CC--ceEEEEecccccccc
Q psy2046 39 GHRVLIFSQFIFVLDILGHYMDIR-------GWRHLRLDGATQVSSRQELIDEYNRD----QD--LFAFLLSTKAGGLGI 105 (138)
Q Consensus 39 ~~k~iif~~~~~~~~~l~~~l~~~-------g~~~~~i~g~~~~~~R~~~~~~F~~~----~~--~~vll~~~~~~~~Gl 105 (138)
.+.++||.++-...+.+....... +.+- .+....+..+=.+++..|.+. +. ..-+.++-...++|+
T Consensus 561 p~G~L~FfPSY~vmdk~~tfw~~~~~we~~~~vk~-l~vEPr~k~~f~e~m~~y~~~i~~pes~ga~~~aVcRGKVSEGl 639 (945)
T KOG1132|consen 561 PYGLLIFFPSYPVMDKLITFWQNRGLWERMEKVKK-LVVEPRSKSEFTEVMSRYYNAIADPESSGAVFFAVCRGKVSEGL 639 (945)
T ss_pred ccceEEeccchHHHHHHHHHHHcchHHHHhhcccC-ceeccCCccchHHHHHHHHHHhhCccccceEEEEEecccccCCC
Confidence 345899998887777774444332 2222 223333444555566677632 11 222445666778999
Q ss_pred CcC--ccCEEEEeCCCC
Q psy2046 106 NLT--AADTVIIHDVDF 120 (138)
Q Consensus 106 ~l~--~~~~vi~~~~~~ 120 (138)
|+. ++..||....|+
T Consensus 640 DFsD~~~RaVI~tGlPy 656 (945)
T KOG1132|consen 640 DFSDDNGRAVIITGLPY 656 (945)
T ss_pred CccccCCceeEEecCCC
Confidence 997 566678877765
No 318
>cd01445 TST_Repeats Thiosulfate sulfurtransferases (TST) contain 2 copies of the Rhodanese Homology Domain. Only the second repeat contains the catalytically active Cys residue. The role of the 1st repeat is uncertain, but believed to be involved in protein interaction. This CD aligns the 1st and 2nd repeats.
Probab=56.77 E-value=47 Score=21.13 Aligned_cols=49 Identities=10% Similarity=0.026 Sum_probs=28.2
Q ss_pred HHHHHHHHHhh-hCCCeEEEEecc---HHHHHHHHHHHhhcCCe-EEEEeCCCC
Q psy2046 26 KKLDEILPDLK-KNGHRVLIFSQF---IFVLDILGHYMDIRGWR-HLRLDGATQ 74 (138)
Q Consensus 26 ~~l~~ll~~~~-~~~~k~iif~~~---~~~~~~l~~~l~~~g~~-~~~i~g~~~ 74 (138)
..+.+++..+. ..+.++|+|+.. ....-.+.-.|+..|.+ +..++|+.+
T Consensus 81 ~~~~~~~~~~GI~~~~~vVvY~~~~~~g~~A~r~~~~l~~~G~~~v~ildGG~~ 134 (138)
T cd01445 81 AEFAAMFEAKGIDLDKHLIATDGDDLGGFTACHIALAARLCGHPDVAILDGGFF 134 (138)
T ss_pred HHHHHHHHHcCCCCCCeEEEECCCCCcchHHHHHHHHHHHcCCCCeEEeCCCHH
Confidence 34555555442 345688888864 23333444456666766 567777653
No 319
>PRK14873 primosome assembly protein PriA; Provisional
Probab=56.28 E-value=30 Score=28.42 Aligned_cols=10 Identities=10% Similarity=-0.130 Sum_probs=8.1
Q ss_pred hHHHHHHhhc
Q psy2046 126 KQAEDRCHRV 135 (138)
Q Consensus 126 ~Q~~gR~~R~ 135 (138)
.|..||++|-
T Consensus 517 ~qvagragr~ 526 (665)
T PRK14873 517 MAAAALVRPR 526 (665)
T ss_pred HHHHHhhcCC
Confidence 4899999884
No 320
>PLN00011 cysteine synthase
Probab=56.26 E-value=79 Score=23.28 Aligned_cols=66 Identities=17% Similarity=0.082 Sum_probs=51.7
Q ss_pred ccCchHHHHHHHHHHhhhCC-----CeEEEEeccHHHHHHHHHHHhhcCCeEEEEeCCCChHHHHHHHHHH
Q psy2046 20 VESGKLKKLDEILPDLKKNG-----HRVLIFSQFIFVLDILGHYMDIRGWRHLRLDGATQVSSRQELIDEY 85 (138)
Q Consensus 20 ~~s~K~~~l~~ll~~~~~~~-----~k~iif~~~~~~~~~l~~~l~~~g~~~~~i~g~~~~~~R~~~~~~F 85 (138)
.-|-|.+.+..++....+++ .+.||-+..-+..-.++-+-...|+++..+-.......+.+.++.|
T Consensus 44 tGS~K~R~a~~~l~~a~~~g~~~~g~~~vv~aSsGN~g~alA~~a~~~G~~~~ivvp~~~~~~k~~~i~~~ 114 (323)
T PLN00011 44 CSSVKDRIAYSMIKDAEDKGLITPGKSTLIEATAGNTGIGLACIGAARGYKVILVMPSTMSLERRIILRAL 114 (323)
T ss_pred ccccchHHHHHHHHHHHHcCCCCCCCcEEEEeCCChHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHc
Confidence 45789999888888877766 3566667777878888888888999987777766557888888888
No 321
>KOG3432|consensus
Probab=56.17 E-value=37 Score=21.06 Aligned_cols=40 Identities=15% Similarity=0.218 Sum_probs=30.7
Q ss_pred CCeEEEEeCCCChHHHHHHHHHHhcCCCceEEEEeccccc
Q psy2046 63 GWRHLRLDGATQVSSRQELIDEYNRDQDLFAFLLSTKAGG 102 (138)
Q Consensus 63 g~~~~~i~g~~~~~~R~~~~~~F~~~~~~~vll~~~~~~~ 102 (138)
.-++..+...++.++-++.+..|-..+..-++|++--++.
T Consensus 35 ~~Nf~vv~~~Tt~~eiedaF~~f~~RdDIaIiLInq~~Ae 74 (121)
T KOG3432|consen 35 EPNFLVVDSKTTVEEIEDAFKSFTARDDIAIILINQFIAE 74 (121)
T ss_pred CCCEEEEeccCCHHHHHHHHHhhccccCeEEEEEhHHHHH
Confidence 3468888889999999999999988777777777644443
No 322
>PRK13555 azoreductase; Provisional
Probab=56.02 E-value=9.6 Score=26.28 Aligned_cols=31 Identities=19% Similarity=0.130 Sum_probs=23.3
Q ss_pred cCccCEEEEeCCCCC---ccchhHHHHHHhhcCC
Q psy2046 107 LTAADTVIIHDVDFN---PYNDKQAEDRCHRVGQ 137 (138)
Q Consensus 107 l~~~~~vi~~~~~~~---~~~~~Q~~gR~~R~GQ 137 (138)
+..|+.+|+.-|-|| |..+..-++|+.|.|-
T Consensus 87 ~~~AD~lvi~~P~~n~~~Pa~LK~~iD~v~~~G~ 120 (208)
T PRK13555 87 FLEADKVVFAFPLWNFTVPAPLITYISYLSQAGK 120 (208)
T ss_pred HHHcCEEEEEcCcccccchHHHHHHHHHHhcCCc
Confidence 346778888888887 5567778889888774
No 323
>PRK06608 threonine dehydratase; Provisional
Probab=55.90 E-value=83 Score=23.42 Aligned_cols=65 Identities=12% Similarity=0.002 Sum_probs=49.5
Q ss_pred cCchHHHHHHHHHHhhhCCC--eEEEEeccHHHHHHHHHHHhhcCCeEEEEeCCCChHHHHHHHHHH
Q psy2046 21 ESGKLKKLDEILPDLKKNGH--RVLIFSQFIFVLDILGHYMDIRGWRHLRLDGATQVSSRQELIDEY 85 (138)
Q Consensus 21 ~s~K~~~l~~ll~~~~~~~~--k~iif~~~~~~~~~l~~~l~~~g~~~~~i~g~~~~~~R~~~~~~F 85 (138)
-|-|.+....++....+.+. +.||-+..-+....++-.-...|+++..+-......+|.+.++.|
T Consensus 51 GS~K~R~a~~~v~~a~~~g~~~~~vv~~SsGN~g~alA~~a~~~G~~~~vv~p~~~~~~k~~~l~~~ 117 (338)
T PRK06608 51 GAFKVRGVLNHLLELKEQGKLPDKIVAYSTGNHGQAVAYASKLFGIKTRIYLPLNTSKVKQQAALYY 117 (338)
T ss_pred CCcHHHHHHHHHHHhhhhcCcCCeEEEECCCHHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHhC
Confidence 46788888888877766664 456655666778888888888899988777766667888888888
No 324
>PRK09190 hypothetical protein; Provisional
Probab=55.74 E-value=56 Score=22.89 Aligned_cols=79 Identities=8% Similarity=-0.047 Sum_probs=45.6
Q ss_pred HHHHHHHhhcCCeEEEEeCCCChHHHHHHHHHHhc------CCCceEEEEeccccccccCcCccCEEEEeCCCCCccchh
Q psy2046 53 DILGHYMDIRGWRHLRLDGATQVSSRQELIDEYNR------DQDLFAFLLSTKAGGLGINLTAADTVIIHDVDFNPYNDK 126 (138)
Q Consensus 53 ~~l~~~l~~~g~~~~~i~g~~~~~~R~~~~~~F~~------~~~~~vll~~~~~~~~Gl~l~~~~~vi~~~~~~~~~~~~ 126 (138)
+.+.+.++......+.+-.+.+...+.+..+..+. ...+.+.+.+...+|.-+......++.+.|..+ .....
T Consensus 117 ~~V~~alk~gk~~Lvi~A~DaS~~t~kKl~~~~~~~~~~~~~~Vp~v~~~tk~eLg~AlGr~~~~~vav~d~gf-A~~l~ 195 (220)
T PRK09190 117 EKVDAALRSGEAAALIHASDGAADGKRKLDQARRALVHETGREIPVIGLFTAAELGLAFGRENVIHAALLAGGA-AERVV 195 (220)
T ss_pred HHHHHHHHcCCceEEEEeccCChhHHHHHHHHHHhhcccccCCccEEEecCHHHHHHHhCCCceeEEEEcChHH-HHHHH
Confidence 34556665555566666667788888887766644 223333444544566666655666777777665 22333
Q ss_pred HHHHHH
Q psy2046 127 QAEDRC 132 (138)
Q Consensus 127 Q~~gR~ 132 (138)
+...|.
T Consensus 196 ~~~~rl 201 (220)
T PRK09190 196 KRAQRL 201 (220)
T ss_pred HHHHHH
Confidence 444443
No 325
>COG0607 PspE Rhodanese-related sulfurtransferase [Inorganic ion transport and metabolism]
Probab=55.40 E-value=13 Score=22.06 Aligned_cols=37 Identities=11% Similarity=0.291 Sum_probs=29.7
Q ss_pred hCCCeEEEEeccHHHHHHHHHHHhhcCCeEE-EEeCCC
Q psy2046 37 KNGHRVLIFSQFIFVLDILGHYMDIRGWRHL-RLDGAT 73 (138)
Q Consensus 37 ~~~~k~iif~~~~~~~~~l~~~l~~~g~~~~-~i~g~~ 73 (138)
..+.+++++|..-.....-...|+..|+... .+.|++
T Consensus 59 ~~~~~ivv~C~~G~rS~~aa~~L~~~G~~~~~~l~gG~ 96 (110)
T COG0607 59 PDDDPIVVYCASGVRSAAAAAALKLAGFTNVYNLDGGI 96 (110)
T ss_pred CCCCeEEEEeCCCCChHHHHHHHHHcCCccccccCCcH
Confidence 3467899999998888899999999998876 566654
No 326
>KOG1805|consensus
Probab=55.29 E-value=1.1e+02 Score=26.70 Aligned_cols=48 Identities=25% Similarity=0.203 Sum_probs=42.1
Q ss_pred CchHHHHHHHHHHhhhCCCeEEEEeccHHHHHHHHHHHhhcCCeEEEE
Q psy2046 22 SGKLKKLDEILPDLKKNGHRVLIFSQFIFVLDILGHYMDIRGWRHLRL 69 (138)
Q Consensus 22 s~K~~~l~~ll~~~~~~~~k~iif~~~~~~~~~l~~~l~~~g~~~~~i 69 (138)
.+|...+..+++-+...|+||++-+.+...+|.|--.|+..++.+..+
T Consensus 696 TGKTTtI~~LIkiL~~~gkkVLLtsyThsAVDNILiKL~~~~i~~lRL 743 (1100)
T KOG1805|consen 696 TGKTTTISLLIKILVALGKKVLLTSYTHSAVDNILIKLKGFGIYILRL 743 (1100)
T ss_pred CCchhhHHHHHHHHHHcCCeEEEEehhhHHHHHHHHHHhccCcceeec
Confidence 579999999999999999999999999999999999999888876654
No 327
>PF00270 DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 Members of this family include the DEAD and DEAH box helicases. Helicases are involved in unwinding nucleic acids. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome biogenesis, nucleocytoplasmic transport, translation, RNA decay and organellar gene expression. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0008026 ATP-dependent helicase activity; PDB: 3RRM_A 3RRN_A 3PEW_A 2KBE_A 3PEY_A 3FHO_A 2ZJA_A 2ZJ8_A 2ZJ5_A 2ZJ2_A ....
Probab=55.21 E-value=52 Score=20.92 Aligned_cols=91 Identities=18% Similarity=0.132 Sum_probs=55.2
Q ss_pred ccCchHHHHHHHHH-HhhhC-CCeEEEEeccHHHHHHHHHHHhhc----CCeEEEEeCCCChH-HHHHHHHHHhcCCCce
Q psy2046 20 VESGKLKKLDEILP-DLKKN-GHRVLIFSQFIFVLDILGHYMDIR----GWRHLRLDGATQVS-SRQELIDEYNRDQDLF 92 (138)
Q Consensus 20 ~~s~K~~~l~~ll~-~~~~~-~~k~iif~~~~~~~~~l~~~l~~~----g~~~~~i~g~~~~~-~R~~~~~~F~~~~~~~ 92 (138)
.-++|-....-.+. .+.+. ..++++.+++....+...+.+... ++....++|+.+.+ +....+ .. ...
T Consensus 23 tGsGKT~~~~~~~l~~~~~~~~~~~lii~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~--~~~ 97 (169)
T PF00270_consen 23 TGSGKTLAYILPALNRLQEGKDARVLIIVPTRALAEQQFERLRKFFSNTNVRVVLLHGGQSISEDQREVL---SN--QAD 97 (169)
T ss_dssp TTSSHHHHHHHHHHHHHHTTSSSEEEEEESSHHHHHHHHHHHHHHTTTTTSSEEEESTTSCHHHHHHHHH---HT--TSS
T ss_pred CCCccHHHHHHHHHhhhccCCCceEEEEeecccccccccccccccccccccccccccccccccccccccc---cc--ccc
Confidence 35678776664443 34343 248999999998777666666554 45788889988754 232333 22 234
Q ss_pred EEEEecccccc-----ccCcCccCEEEE
Q psy2046 93 AFLLSTKAGGL-----GINLTAADTVII 115 (138)
Q Consensus 93 vll~~~~~~~~-----Gl~l~~~~~vi~ 115 (138)
+++.++..... .+++...+.+|+
T Consensus 98 ilv~T~~~l~~~~~~~~~~~~~~~~iVi 125 (169)
T PF00270_consen 98 ILVTTPEQLLDLISNGKINISRLSLIVI 125 (169)
T ss_dssp EEEEEHHHHHHHHHTTSSTGTTESEEEE
T ss_pred ccccCcchhhccccccccccccceeecc
Confidence 57777766432 235556555555
No 328
>PRK07476 eutB threonine dehydratase; Provisional
Probab=55.21 E-value=77 Score=23.29 Aligned_cols=66 Identities=15% Similarity=-0.005 Sum_probs=48.1
Q ss_pred ccCchHHHHHHHHHHhhhCCC-eEEEEeccHHHHHHHHHHHhhcCCeEEEEeCCCChHHHHHHHHHH
Q psy2046 20 VESGKLKKLDEILPDLKKNGH-RVLIFSQFIFVLDILGHYMDIRGWRHLRLDGATQVSSRQELIDEY 85 (138)
Q Consensus 20 ~~s~K~~~l~~ll~~~~~~~~-k~iif~~~~~~~~~l~~~l~~~g~~~~~i~g~~~~~~R~~~~~~F 85 (138)
.-|-|.+....++....+.+. +.||=+..-+....++-+-...|+++..+-....+..+...++.|
T Consensus 46 tGS~K~R~a~~~i~~a~~~~~~~gvv~aSsGN~g~alA~~a~~~G~~~~i~vp~~~~~~k~~~~~~~ 112 (322)
T PRK07476 46 TGSFKLRGATNALLSLSAQERARGVVTASTGNHGRALAYAARALGIRATICMSRLVPANKVDAIRAL 112 (322)
T ss_pred CCCchHHHHHHHHHhhhhhhhCCeEEEECCChHHHHHHHHHHHhCCCEEEEeCCCCCHHHHHHHHHc
Confidence 457899988888877655543 424444456667788888888899988877776667788888887
No 329
>PRK13767 ATP-dependent helicase; Provisional
Probab=55.10 E-value=1.3e+02 Score=25.61 Aligned_cols=92 Identities=15% Similarity=0.163 Sum_probs=51.8
Q ss_pred ccCchHHH-HHHHHHHhhh--------CCCeEEEEeccHHHHHHHHHHHh-----------h----c-CCeEEEEeCCCC
Q psy2046 20 VESGKLKK-LDEILPDLKK--------NGHRVLIFSQFIFVLDILGHYMD-----------I----R-GWRHLRLDGATQ 74 (138)
Q Consensus 20 ~~s~K~~~-l~~ll~~~~~--------~~~k~iif~~~~~~~~~l~~~l~-----------~----~-g~~~~~i~g~~~ 74 (138)
.-|+|... +.-++..+.. .+-++|+.++.+.-+..+...|. . . ++.+...+|+++
T Consensus 56 TGSGKTlaa~Lpil~~l~~~~~~~~~~~~~~~LyIsPtraLa~di~~~L~~~l~~i~~~~~~~g~~~~~i~v~v~~Gdt~ 135 (876)
T PRK13767 56 TGSGKTLAAFLAIIDELFRLGREGELEDKVYCLYVSPLRALNNDIHRNLEEPLTEIREIAKERGEELPEIRVAIRTGDTS 135 (876)
T ss_pred CCCcHHHHHHHHHHHHHHhhccccCCCCCeEEEEEcCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCCeeEEEEcCCCC
Confidence 34677654 3344444432 23368899988766554333221 1 1 567789999999
Q ss_pred hHHHHHHHHHHhcCCCceEEEEecccccccc-------CcCccCEEEEe
Q psy2046 75 VSSRQELIDEYNRDQDLFAFLLSTKAGGLGI-------NLTAADTVIIH 116 (138)
Q Consensus 75 ~~~R~~~~~~F~~~~~~~vll~~~~~~~~Gl-------~l~~~~~vi~~ 116 (138)
..+|.+.+.+ .+.+++.++.....-+ .+.+...||+=
T Consensus 136 ~~~r~~~l~~-----~p~IlVtTPE~L~~ll~~~~~~~~l~~l~~VVID 179 (876)
T PRK13767 136 SYEKQKMLKK-----PPHILITTPESLAILLNSPKFREKLRTVKWVIVD 179 (876)
T ss_pred HHHHHHHHhC-----CCCEEEecHHHHHHHhcChhHHHHHhcCCEEEEe
Confidence 8888766542 2345666665543211 24455666663
No 330
>PLN02363 phosphoribosylanthranilate isomerase
Probab=55.08 E-value=68 Score=23.00 Aligned_cols=51 Identities=14% Similarity=0.082 Sum_probs=34.4
Q ss_pred HHHHHHHHHhhhC-CCeEEEEeccHHHHHHHHHHHhhcCCeEEEEeCCCChHHH
Q psy2046 26 KKLDEILPDLKKN-GHRVLIFSQFIFVLDILGHYMDIRGWRHLRLDGATQVSSR 78 (138)
Q Consensus 26 ~~l~~ll~~~~~~-~~k~iif~~~~~~~~~l~~~l~~~g~~~~~i~g~~~~~~R 78 (138)
....++...+... -.+|-||++. ..+.+.+.++..++.++.+||..+.+.-
T Consensus 86 e~a~~I~~~l~~~~~~~VgVfv~~--~~~~I~~~~~~~~ld~VQLHG~e~~~~~ 137 (256)
T PLN02363 86 SVAKEISQVAREGGAKPVGVFVDD--DANTILRAADSSDLELVQLHGNGSRAAF 137 (256)
T ss_pred HHHHHHHHhccccCccEEEEEeCC--CHHHHHHHHHhcCCCEEEECCCCCHHHH
Confidence 3444444433222 3469999864 4567888888889999999998876543
No 331
>TIGR02208 lipid_A_msbB lipid A biosynthesis (KDO)2-(lauroyl)-lipid IVA acyltransferase. This family consists of MsbB in E. coli and closely related proteins in other species. MsbB is homologous to HtrB (TIGR02207) and acts immediately after it in the biosynthesis of KDO-2 lipid A (also called Re LPS and Re endotoxin). These two enzymes act after creation of KDO-2 lipid IV-A by addition of the KDO sugars.
Probab=55.08 E-value=80 Score=22.98 Aligned_cols=57 Identities=11% Similarity=0.140 Sum_probs=37.0
Q ss_pred HHHhhhCCCeEEEEeccHHHHHHHHHHHhhcCCeEEEEeCCCChHHHHHHHHHHhcC
Q psy2046 32 LPDLKKNGHRVLIFSQFIFVLDILGHYMDIRGWRHLRLDGATQVSSRQELIDEYNRD 88 (138)
Q Consensus 32 l~~~~~~~~k~iif~~~~~~~~~l~~~l~~~g~~~~~i~g~~~~~~R~~~~~~F~~~ 88 (138)
+.+...+++.+|+++.+-...+.....+...+.+...++-......-++.+.+++..
T Consensus 114 l~~~~~~gkgvi~~t~H~gnwE~~~~~~~~~~~~~~~v~r~~~n~~~d~~~~~~R~~ 170 (305)
T TIGR02208 114 IEAAQAAGKPVIFLVPHGWAIDYAGLRLASQGLPMVTMFNNHKNPLFDWLWNRVRSR 170 (305)
T ss_pred HHHHHhCCCCEEEEecchhHHHHHHHHHHhcCCCceEEeeCCCCHHHHHHHHHHHhc
Confidence 444455677888888887777777777766677766666665544445555655543
No 332
>PF02602 HEM4: Uroporphyrinogen-III synthase HemD; InterPro: IPR003754 Tetrapyrroles are large macrocyclic compounds derived from a common biosynthetic pathway []. The end-product, uroporphyrinogen III, is used to synthesise a number of important molecules, including vitamin B12, haem, sirohaem, chlorophyll, coenzyme F430 and phytochromobilin []. The first stage in tetrapyrrole synthesis is the synthesis of 5-aminoaevulinic acid ALA via two possible routes: (1) condensation of succinyl CoA and glycine (C4 pathway) using ALA synthase (2.3.1.37 from EC), or (2) decarboxylation of glutamate (C5 pathway) via three different enzymes, glutamyl-tRNA synthetase (6.1.1.17 from EC) to charge a tRNA with glutamate, glutamyl-tRNA reductase (1.2.1.70 from EC) to reduce glutamyl-tRNA to glutamate-1-semialdehyde (GSA), and GSA aminotransferase (5.4.3.8 from EC) to catalyse a transamination reaction to produce ALA. The second stage is to convert ALA to uroporphyrinogen III, the first macrocyclic tetrapyrrolic structure in the pathway. This is achieved by the action of three enzymes in one common pathway: porphobilinogen (PBG) synthase (or ALA dehydratase, 4.2.1.24 from EC) to condense two ALA molecules to generate porphobilinogen; hydroxymethylbilane synthase (or PBG deaminase, 2.5.1.61 from EC) to polymerise four PBG molecules into preuroporphyrinogen (tetrapyrrole structure); and uroporphyrinogen III synthase (4.2.1.75 from EC) to link two pyrrole units together (rings A and D) to yield uroporphyrinogen III. Uroporphyrinogen III is the first branch point of the pathway. To synthesise cobalamin (vitamin B12), sirohaem, and coenzyme F430, uroporphyrinogen III needs to be converted into precorrin-2 by the action of uroporphyrinogen III methyltransferase (2.1.1.107 from EC). To synthesise haem and chlorophyll, uroporphyrinogen III needs to be decarboxylated into coproporphyrinogen III by the action of uroporphyrinogen III decarboxylase (4.1.1.37 from EC) []. This entry represents uroporphyrinogen III synthase (4.2.1.75 from EC) which functions during the second stage of tetrapyrrole biosynthesis. This enzyme catalyses the inversion of the final pyrrole unit (ring D) of the linear tetrapyrrole molecule, linking it to the first pyrrole unit (ring A), thereby generating a large macrocyclic structure called uroporphyrinogen III []. The enzyme folds into two alpha/beta domains connected by a beta-ladder, the active site being located between the two domains []. Congenital erythropoietic porphyria (CEP) is an autosomal recessive inborn error of metabolism that results from the markedly deficient activity of uroporphyrinogen III synthase []. ; GO: 0004852 uroporphyrinogen-III synthase activity, 0033014 tetrapyrrole biosynthetic process; PDB: 1WD7_B 1WCX_A 1WCW_A 3D8R_A 3D8T_B 3D8S_A 3D8N_A 3RE1_A 3MW8_A 3P9Z_A ....
Probab=54.95 E-value=17 Score=24.90 Aligned_cols=74 Identities=20% Similarity=0.120 Sum_probs=46.6
Q ss_pred hHHHHHHHHHHhhhCCCeEEEEeccHHHHHHHHHHHhhcCCeEE---EEeCCCChHHHHHHHHHHhcCCCceEEEEeccc
Q psy2046 24 KLKKLDEILPDLKKNGHRVLIFSQFIFVLDILGHYMDIRGWRHL---RLDGATQVSSRQELIDEYNRDQDLFAFLLSTKA 100 (138)
Q Consensus 24 K~~~l~~ll~~~~~~~~k~iif~~~~~~~~~l~~~l~~~g~~~~---~i~g~~~~~~R~~~~~~F~~~~~~~vll~~~~~ 100 (138)
-...|.+.+.... .+.++++++... ..+.|.+.|++.|+.+. .|.- .+........+.|..+....+++.|+.+
T Consensus 103 ~s~~L~~~l~~~~-~~~~vl~~~g~~-~~~~l~~~L~~~g~~v~~~~vY~~-~~~~~~~~~~~~l~~~~~~~v~ftS~~~ 179 (231)
T PF02602_consen 103 SSEGLAELLKEQL-RGKRVLILRGEG-GRPDLPEKLREAGIEVTEVIVYET-PPEELSPELKEALDRGEIDAVVFTSPSA 179 (231)
T ss_dssp SHHHHHGGHHHCC-TTEEEEEEESSS-SCHHHHHHHHHTTEEEEEEECEEE-EEHHHHHHHHHHHHHTTTSEEEESSHHH
T ss_pred CHHHHHHHHHhhC-CCCeEEEEcCCC-ccHHHHHHHHHCCCeEEEEEEeec-ccccchHHHHHHHHcCCCCEEEECCHHH
Confidence 4456666665422 345777766643 36778899988887633 3333 5567788888888876555455555444
No 333
>PHA02558 uvsW UvsW helicase; Provisional
Probab=54.10 E-value=1.1e+02 Score=24.15 Aligned_cols=43 Identities=14% Similarity=-0.052 Sum_probs=30.2
Q ss_pred ccCchHHHHHHHHHHhhhCCC-eEEEEeccHHHHHHHHHHHhhc
Q psy2046 20 VESGKLKKLDEILPDLKKNGH-RVLIFSQFIFVLDILGHYMDIR 62 (138)
Q Consensus 20 ~~s~K~~~l~~ll~~~~~~~~-k~iif~~~~~~~~~l~~~l~~~ 62 (138)
.-++|......+.......++ +++|.+++.+-++.+.+.+.+.
T Consensus 138 TGsGKT~i~~~l~~~~~~~~~~~vLilvpt~eL~~Q~~~~l~~~ 181 (501)
T PHA02558 138 TSAGKSLIQYLLSRYYLENYEGKVLIIVPTTSLVTQMIDDFVDY 181 (501)
T ss_pred CCCCHHHHHHHHHHHHHhcCCCeEEEEECcHHHHHHHHHHHHHh
Confidence 346777655555444344444 9999999999888888887764
No 334
>KOG0351|consensus
Probab=54.09 E-value=54 Score=28.23 Aligned_cols=59 Identities=8% Similarity=0.143 Sum_probs=44.3
Q ss_pred EEEEeccHHHHHHHHHHHhhcCCeEEEEeCCCChHHHHHHHHHHhcC-CCceEEEEeccc
Q psy2046 42 VLIFSQFIFVLDILGHYMDIRGWRHLRLDGATQVSSRQELIDEYNRD-QDLFAFLLSTKA 100 (138)
Q Consensus 42 ~iif~~~~~~~~~l~~~l~~~g~~~~~i~g~~~~~~R~~~~~~F~~~-~~~~vll~~~~~ 100 (138)
+||.++...-.+--...|...+++...++|..+..+|..+.+....+ +..+++.+++..
T Consensus 307 tvVISPL~SLm~DQv~~L~~~~I~a~~L~s~q~~~~~~~i~q~l~~~~~~ikilYvtPE~ 366 (941)
T KOG0351|consen 307 TVVISPLISLMQDQVTHLSKKGIPACFLSSIQTAAERLAILQKLANGNPIIKILYVTPEK 366 (941)
T ss_pred eEEeccHHHHHHHHHHhhhhcCcceeeccccccHHHHHHHHHHHhCCCCeEEEEEeCHHH
Confidence 45666665544444455567899999999999999999999999876 346677777655
No 335
>PF00265 TK: Thymidine kinase; InterPro: IPR001267 Thymidine kinase (TK) (2.7.1.21 from EC) is an ubiquitous enzyme that catalyzes the ATP-dependent phosphorylation of thymidine. Two different families of Thymidine kinase have been identified [, ] and are represented in this entry; one groups together Thymidine kinase from herpesviruses, as well as cytosolic thymidylate kinases and the second family groups Thymidine kinase from various sources that include, vertebrates, bacteria, the Bacteriophage T4, poxviruses, African swine fever virus (ASFV) and Fish lymphocystis disease virus (FLDV). The major capsid protein of insect iridescent viruses also belongs to this family.; GO: 0004797 thymidine kinase activity, 0005524 ATP binding; PDB: 1XX6_B 2J9R_A 2J87_B 3E2I_A 2JA1_A 2UZ3_B 2B8T_B 2WVJ_A 1W4R_F 1XBT_F ....
Probab=53.91 E-value=28 Score=23.31 Aligned_cols=32 Identities=28% Similarity=0.314 Sum_probs=26.4
Q ss_pred cccCchHHHHHHHHHHhhhCCCeEEEEeccHH
Q psy2046 19 VVESGKLKKLDEILPDLKKNGHRVLIFSQFIF 50 (138)
Q Consensus 19 ~~~s~K~~~l~~ll~~~~~~~~k~iif~~~~~ 50 (138)
.+.|+|-..|++.+..+...+.++++|-+..+
T Consensus 9 pM~sGKS~eLi~~~~~~~~~~~~v~~~kp~~D 40 (176)
T PF00265_consen 9 PMFSGKSTELIRRIHRYEIAGKKVLVFKPAID 40 (176)
T ss_dssp STTSSHHHHHHHHHHHHHHTT-EEEEEEESTS
T ss_pred CcCChhHHHHHHHHHHHHhCCCeEEEEEeccc
Confidence 46789999999999888888999999987654
No 336
>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]
Probab=53.81 E-value=46 Score=23.90 Aligned_cols=40 Identities=20% Similarity=0.287 Sum_probs=29.8
Q ss_pred HHHHHHHHHHhhhCCCeEEEEeccHHHHHHHHHHHhhcCCe
Q psy2046 25 LKKLDEILPDLKKNGHRVLIFSQFIFVLDILGHYMDIRGWR 65 (138)
Q Consensus 25 ~~~l~~ll~~~~~~~~k~iif~~~~~~~~~l~~~l~~~g~~ 65 (138)
++.+.. +.+....|..+++|+++.+.+..+.+.|++.|+.
T Consensus 175 W~~le~-~~~~Lkpgg~~~~y~P~veQv~kt~~~l~~~g~~ 214 (256)
T COG2519 175 WNVLEH-VSDALKPGGVVVVYSPTVEQVEKTVEALRERGFV 214 (256)
T ss_pred HHHHHH-HHHHhCCCcEEEEEcCCHHHHHHHHHHHHhcCcc
Confidence 343333 4444566789999999999999999999987653
No 337
>PTZ00110 helicase; Provisional
Probab=53.80 E-value=1.1e+02 Score=24.36 Aligned_cols=73 Identities=11% Similarity=0.057 Sum_probs=45.6
Q ss_pred CCeEEEEeccHHHHHHHHHHHhhc----CCeEEEEeCCCChHHHHHHHHHHhcCCCceEEEEeccc----ccc-ccCcCc
Q psy2046 39 GHRVLIFSQFIFVLDILGHYMDIR----GWRHLRLDGATQVSSRQELIDEYNRDQDLFAFLLSTKA----GGL-GINLTA 109 (138)
Q Consensus 39 ~~k~iif~~~~~~~~~l~~~l~~~----g~~~~~i~g~~~~~~R~~~~~~F~~~~~~~vll~~~~~----~~~-Gl~l~~ 109 (138)
+..+||.+++++-+..+.+.+... ++....++|+.+.......+ ..+ +.++++++.. ... -+++..
T Consensus 203 gp~~LIL~PTreLa~Qi~~~~~~~~~~~~i~~~~~~gg~~~~~q~~~l---~~~--~~IlVaTPgrL~d~l~~~~~~l~~ 277 (545)
T PTZ00110 203 GPIVLVLAPTRELAEQIREQCNKFGASSKIRNTVAYGGVPKRGQIYAL---RRG--VEILIACPGRLIDFLESNVTNLRR 277 (545)
T ss_pred CcEEEEECChHHHHHHHHHHHHHHhcccCccEEEEeCCCCHHHHHHHH---HcC--CCEEEECHHHHHHHHHcCCCChhh
Confidence 457999999998877777766653 56777888888755443333 333 3456666532 222 245666
Q ss_pred cCEEEEe
Q psy2046 110 ADTVIIH 116 (138)
Q Consensus 110 ~~~vi~~ 116 (138)
...+|+=
T Consensus 278 v~~lViD 284 (545)
T PTZ00110 278 VTYLVLD 284 (545)
T ss_pred CcEEEee
Confidence 7777663
No 338
>COG1182 AcpD Acyl carrier protein phosphodiesterase [Lipid metabolism]
Probab=53.51 E-value=12 Score=25.85 Aligned_cols=30 Identities=37% Similarity=0.395 Sum_probs=21.3
Q ss_pred ccCEEEEeCCCCC---ccchhHHHHHHhhcCCC
Q psy2046 109 AADTVIIHDVDFN---PYNDKQAEDRCHRVGQT 138 (138)
Q Consensus 109 ~~~~vi~~~~~~~---~~~~~Q~~gR~~R~GQt 138 (138)
.|+.+|+.-|-|| |..+..-++++.|.|.|
T Consensus 87 aAD~vVi~~PM~Nf~iPa~LK~yiD~i~~aGkT 119 (202)
T COG1182 87 AADKVVIAAPMYNFNIPAQLKAYIDHIAVAGKT 119 (202)
T ss_pred hcCeEEEEecccccCCCHHHHHHHHHHhcCCce
Confidence 4666677677777 55666678888888865
No 339
>TIGR03865 PQQ_CXXCW PQQ-dependent catabolism-associated CXXCW motif protein. Members of this protein family have a CXXXCW motif, consistent with a possible role in redox cofactor binding. This protein family shows strong relationships by phylogenetic profiling and conserved gene neighborhoods with a transport system for alcohols metabolized by PQQ-dependent enzymes.
Probab=53.44 E-value=58 Score=21.40 Aligned_cols=38 Identities=5% Similarity=-0.042 Sum_probs=27.3
Q ss_pred hCCCeEEEEeccHH-HHHHHHHHHhhcCCe-EEEEeCCCC
Q psy2046 37 KNGHRVLIFSQFIF-VLDILGHYMDIRGWR-HLRLDGATQ 74 (138)
Q Consensus 37 ~~~~k~iif~~~~~-~~~~l~~~l~~~g~~-~~~i~g~~~ 74 (138)
..+..+|+||..-. ........|...|++ +..+.|++.
T Consensus 114 ~~d~~IVvYC~~G~~~S~~aa~~L~~~G~~~V~~l~GG~~ 153 (162)
T TIGR03865 114 DKDRPLVFYCLADCWMSWNAAKRALAYGYSNVYWYPDGTD 153 (162)
T ss_pred CCCCEEEEEECCCCHHHHHHHHHHHhcCCcceEEecCCHH
Confidence 35678999998643 355567777888987 566888764
No 340
>COG1817 Uncharacterized protein conserved in archaea [Function unknown]
Probab=52.61 E-value=97 Score=23.22 Aligned_cols=74 Identities=15% Similarity=0.232 Sum_probs=48.5
Q ss_pred ccCchHHHHHHHHHHhhhCCCeEEEEeccHHHHHHHHHHHhhcCCeEEEE--eCCCChH-------HHHHHHHHHhcCCC
Q psy2046 20 VESGKLKKLDEILPDLKKNGHRVLIFSQFIFVLDILGHYMDIRGWRHLRL--DGATQVS-------SRQELIDEYNRDQD 90 (138)
Q Consensus 20 ~~s~K~~~l~~ll~~~~~~~~k~iif~~~~~~~~~l~~~l~~~g~~~~~i--~g~~~~~-------~R~~~~~~F~~~~~ 90 (138)
..++-+..+..++.++.++|..++|=|.-. +.+.+.|+..|+++-++ ||+.+.. +|...+.++-.+-.
T Consensus 8 ~n~~hvhfFk~lI~elekkG~ev~iT~rd~---~~v~~LLd~ygf~~~~Igk~g~~tl~~Kl~~~~eR~~~L~ki~~~~k 84 (346)
T COG1817 8 GNPPHVHFFKNLIWELEKKGHEVLITCRDF---GVVTELLDLYGFPYKSIGKHGGVTLKEKLLESAERVYKLSKIIAEFK 84 (346)
T ss_pred CCcchhhHHHHHHHHHHhCCeEEEEEEeec---CcHHHHHHHhCCCeEeecccCCccHHHHHHHHHHHHHHHHHHHhhcC
Confidence 455677888899999999998888877544 35556666667776554 5555544 56666666655444
Q ss_pred ceEEEE
Q psy2046 91 LFAFLL 96 (138)
Q Consensus 91 ~~vll~ 96 (138)
+.+.+.
T Consensus 85 pdv~i~ 90 (346)
T COG1817 85 PDVAIG 90 (346)
T ss_pred CceEee
Confidence 444443
No 341
>PLN02591 tryptophan synthase
Probab=52.40 E-value=84 Score=22.44 Aligned_cols=55 Identities=18% Similarity=0.181 Sum_probs=30.0
Q ss_pred HHHhhhCCCeEEEEeccH-HHHHHHHHHHhhcCCeEEEEeCCCChHHHHHHHHHHh
Q psy2046 32 LPDLKKNGHRVLIFSQFI-FVLDILGHYMDIRGWRHLRLDGATQVSSRQELIDEYN 86 (138)
Q Consensus 32 l~~~~~~~~k~iif~~~~-~~~~~l~~~l~~~g~~~~~i~g~~~~~~R~~~~~~F~ 86 (138)
+++..+.|-..+|.-+.+ +..+.+.+.+++.|+....+-..++..+|.+.+.+..
T Consensus 99 ~~~~~~aGv~GviipDLP~ee~~~~~~~~~~~gl~~I~lv~Ptt~~~ri~~ia~~~ 154 (250)
T PLN02591 99 MATIKEAGVHGLVVPDLPLEETEALRAEAAKNGIELVLLTTPTTPTERMKAIAEAS 154 (250)
T ss_pred HHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHhC
Confidence 333334443344444333 3344555555666777777776666667766666653
No 342
>PF12646 DUF3783: Domain of unknown function (DUF3783); InterPro: IPR016621 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=52.25 E-value=11 Score=20.23 Aligned_cols=24 Identities=29% Similarity=0.288 Sum_probs=15.3
Q ss_pred eEEEEeccHH-HHHHHHHHHhhcCC
Q psy2046 41 RVLIFSQFIF-VLDILGHYMDIRGW 64 (138)
Q Consensus 41 k~iif~~~~~-~~~~l~~~l~~~g~ 64 (138)
++++|+.+.. .++.+-..+++.|+
T Consensus 2 ~~ll~~g~~~~el~~~l~~~r~~~~ 26 (58)
T PF12646_consen 2 EFLLFSGFSGEELDKFLDALRKAGI 26 (58)
T ss_pred CEEEECCCCHHHHHHHHHHHHHcCC
Confidence 5677777664 46666666666665
No 343
>cd08172 GlyDH-like1 Glycerol dehydrogenases-like. Glycerol dehydrogenases-like. The proteins in this family have not been characterized, but they show sequence homology with glycerol dehydrogenase. Glycerol dehydrogenases (GlyDH) is a key enzyme in the glycerol dissimilation pathway. In anaerobic conditions, many microorganisms utilize glycerol as a source of carbon through coupled oxidative and reductive pathways. One of the pathways involves the oxidation of glycerol to dihydroxyacetone with the reduction of NAD+ to NADH catalyzed by glycerol dehydrogenases. Dihydroxyacetone is then phosphorylated by dihydroxyacetone kinase and enters the glycolytic pathway for further degradation. The activity of GlyDH is zinc-dependent. The zinc ion plays a role in stabilizing an alkoxide intermediate at the active site.
Probab=51.91 E-value=97 Score=23.02 Aligned_cols=23 Identities=22% Similarity=0.167 Sum_probs=9.3
Q ss_pred CCeEEEEeCCCChHHHHHHHHHH
Q psy2046 63 GWRHLRLDGATQVSSRQELIDEY 85 (138)
Q Consensus 63 g~~~~~i~g~~~~~~R~~~~~~F 85 (138)
++.+..+.|..+.+.-.+..+.+
T Consensus 50 ~~~~~~~~~~p~~~~v~~~~~~~ 72 (347)
T cd08172 50 EAFVLRYDGECSEENIERLAAQA 72 (347)
T ss_pred eEEEEEeCCCCCHHHHHHHHHHH
Confidence 34444444443333333444433
No 344
>COG1201 Lhr Lhr-like helicases [General function prediction only]
Probab=51.36 E-value=84 Score=26.64 Aligned_cols=90 Identities=19% Similarity=0.217 Sum_probs=54.7
Q ss_pred cCchH-HHHHHHHHHhhhCC--Ce-EEEEeccH--------HHHHHHHHHHhhcCCeEEEEeCCCChHHHHHHHHHHhcC
Q psy2046 21 ESGKL-KKLDEILPDLKKNG--HR-VLIFSQFI--------FVLDILGHYMDIRGWRHLRLDGATQVSSRQELIDEYNRD 88 (138)
Q Consensus 21 ~s~K~-~~l~~ll~~~~~~~--~k-~iif~~~~--------~~~~~l~~~l~~~g~~~~~i~g~~~~~~R~~~~~~F~~~ 88 (138)
-|+|. .+++-++..+.+.+ +. -=|++-|+ +....|..+++..|+++..-||.+++.+|.+...
T Consensus 47 GsGKTeAAfLpil~~l~~~~~~~~~~~i~~lYIsPLkALn~Di~~rL~~~~~~~G~~v~vRhGDT~~~er~r~~~----- 121 (814)
T COG1201 47 GSGKTEAAFLPVINELLSLGKGKLEDGIYALYISPLKALNNDIRRRLEEPLRELGIEVAVRHGDTPQSEKQKMLK----- 121 (814)
T ss_pred CCChHHHHHHHHHHHHHhccCCCCCCceEEEEeCcHHHHHHHHHHHHHHHHHHcCCccceecCCCChHHhhhccC-----
Confidence 35664 45666777666552 11 11333333 3345677777788999999999999999866554
Q ss_pred CCceEEEEeccccccccC-------cCccCEEEE
Q psy2046 89 QDLFAFLLSTKAGGLGIN-------LTAADTVII 115 (138)
Q Consensus 89 ~~~~vll~~~~~~~~Gl~-------l~~~~~vi~ 115 (138)
+.+.+|+.++.+...=++ |.+..+||.
T Consensus 122 ~PPdILiTTPEsL~lll~~~~~r~~l~~vr~VIV 155 (814)
T COG1201 122 NPPHILITTPESLAILLNSPKFRELLRDVRYVIV 155 (814)
T ss_pred CCCcEEEeChhHHHHHhcCHHHHHHhcCCcEEEe
Confidence 233457766666443332 446666666
No 345
>PRK00254 ski2-like helicase; Provisional
Probab=51.22 E-value=1.4e+02 Score=24.71 Aligned_cols=58 Identities=14% Similarity=0.091 Sum_probs=40.9
Q ss_pred cccCchHHHH-HHHHHHhhhCCCeEEEEeccHHHHHHHHHHHh---hcCCeEEEEeCCCChH
Q psy2046 19 VVESGKLKKL-DEILPDLKKNGHRVLIFSQFIFVLDILGHYMD---IRGWRHLRLDGATQVS 76 (138)
Q Consensus 19 ~~~s~K~~~l-~~ll~~~~~~~~k~iif~~~~~~~~~l~~~l~---~~g~~~~~i~g~~~~~ 76 (138)
..-|+|.... .-++..+...+.++|+.++.+.-+......++ ..|+.+..++|+.+..
T Consensus 47 pTGsGKT~~~~l~il~~l~~~~~~~l~l~P~~aLa~q~~~~~~~~~~~g~~v~~~~Gd~~~~ 108 (720)
T PRK00254 47 PTASGKTLVAEIVMVNKLLREGGKAVYLVPLKALAEEKYREFKDWEKLGLRVAMTTGDYDST 108 (720)
T ss_pred CCCcHHHHHHHHHHHHHHHhcCCeEEEEeChHHHHHHHHHHHHHHhhcCCEEEEEeCCCCCc
Confidence 3456786654 45566655567799999999887776665554 3478899999988643
No 346
>TIGR00963 secA preprotein translocase, SecA subunit. The proteins SecA-F and SecY, not all of which are necessary, comprise the standard prokaryotic protein translocation apparatus. Other, specialized translocation systems also exist but are not as broadly distributed. This model describes SecA, an essential member of the apparatus.
Probab=51.06 E-value=1.5e+02 Score=24.95 Aligned_cols=45 Identities=11% Similarity=0.045 Sum_probs=32.7
Q ss_pred CCCeEEEEeccHHHHHHHHH----HHhhcCCeEEEEeCCCChHHHHHHH
Q psy2046 38 NGHRVLIFSQFIFVLDILGH----YMDIRGWRHLRLDGATQVSSRQELI 82 (138)
Q Consensus 38 ~~~k~iif~~~~~~~~~l~~----~l~~~g~~~~~i~g~~~~~~R~~~~ 82 (138)
.|.++.|.+++..-+....+ .++..|+++..+.|+++..+|....
T Consensus 96 ~G~~V~VvTpt~~LA~qdae~~~~l~~~LGLsv~~i~g~~~~~~r~~~y 144 (745)
T TIGR00963 96 TGKGVHVVTVNDYLAQRDAEWMGQVYRFLGLSVGLILSGMSPEERREAY 144 (745)
T ss_pred hCCCEEEEcCCHHHHHHHHHHHHHHhccCCCeEEEEeCCCCHHHHHHhc
Confidence 46689999998866554444 4445689999999999977665443
No 347
>PRK11493 sseA 3-mercaptopyruvate sulfurtransferase; Provisional
Probab=51.02 E-value=57 Score=23.41 Aligned_cols=37 Identities=8% Similarity=-0.111 Sum_probs=30.0
Q ss_pred CCCeEEEEeccHHHHHHHHHHHhhcCCe-EEEEeCCCC
Q psy2046 38 NGHRVLIFSQFIFVLDILGHYMDIRGWR-HLRLDGATQ 74 (138)
Q Consensus 38 ~~~k~iif~~~~~~~~~l~~~l~~~g~~-~~~i~g~~~ 74 (138)
.++++|+||++-.....+.-+|+..|++ +..++|+..
T Consensus 230 ~~~~ii~yC~~G~~A~~~~~~l~~~G~~~v~~y~Gs~~ 267 (281)
T PRK11493 230 FDRPIIASCGSGVTAAVVVLALATLDVPNVKLYDGAWS 267 (281)
T ss_pred CCCCEEEECCcHHHHHHHHHHHHHcCCCCceeeCCCHH
Confidence 4568999999888888888888888986 678888764
No 348
>KOG0385|consensus
Probab=50.90 E-value=1.6e+02 Score=25.16 Aligned_cols=77 Identities=16% Similarity=0.023 Sum_probs=49.7
Q ss_pred chHHHHHHHHHHhhh---CCCeEEEEeccHHHHHHHHHHHhhc--CCeEEEEeCCCChHHHHHHHHHHhcCCCceEEEEe
Q psy2046 23 GKLKKLDEILPDLKK---NGHRVLIFSQFIFVLDILGHYMDIR--GWRHLRLDGATQVSSRQELIDEYNRDQDLFAFLLS 97 (138)
Q Consensus 23 ~K~~~l~~ll~~~~~---~~~k~iif~~~~~~~~~l~~~l~~~--g~~~~~i~g~~~~~~R~~~~~~F~~~~~~~vll~~ 97 (138)
+|.-..+.++..+.. .....+|.++.-. ++.....+++. +++++.++|.. .+|...++.+.......|++.+
T Consensus 198 GKTlQtIs~l~yl~~~~~~~GPfLVi~P~St-L~NW~~Ef~rf~P~l~~~~~~Gdk--~eR~~~~r~~~~~~~fdV~iTs 274 (971)
T KOG0385|consen 198 GKTLQTISLLGYLKGRKGIPGPFLVIAPKST-LDNWMNEFKRFTPSLNVVVYHGDK--EERAALRRDIMLPGRFDVCITS 274 (971)
T ss_pred chHHHHHHHHHHHHHhcCCCCCeEEEeeHhh-HHHHHHHHHHhCCCcceEEEeCCH--HHHHHHHHHhhccCCCceEeeh
Confidence 565555555554432 2457888888544 44444444443 77899999954 7999999988866566677766
Q ss_pred ccccc
Q psy2046 98 TKAGG 102 (138)
Q Consensus 98 ~~~~~ 102 (138)
...+-
T Consensus 275 YEi~i 279 (971)
T KOG0385|consen 275 YEIAI 279 (971)
T ss_pred HHHHH
Confidence 66543
No 349
>PRK01297 ATP-dependent RNA helicase RhlB; Provisional
Probab=50.63 E-value=1.2e+02 Score=23.61 Aligned_cols=92 Identities=12% Similarity=0.113 Sum_probs=53.4
Q ss_pred ccCchHH-HHHHHHHHhhhC---------CCeEEEEeccHHHHHHHHHHHhh----cCCeEEEEeCCCChHHHHHHHHHH
Q psy2046 20 VESGKLK-KLDEILPDLKKN---------GHRVLIFSQFIFVLDILGHYMDI----RGWRHLRLDGATQVSSRQELIDEY 85 (138)
Q Consensus 20 ~~s~K~~-~l~~ll~~~~~~---------~~k~iif~~~~~~~~~l~~~l~~----~g~~~~~i~g~~~~~~R~~~~~~F 85 (138)
.-|+|-. .+.-++..+.+. +.++||.+++++-+..+...++. .++.+..++|+.+.....+ .+
T Consensus 133 TGSGKTlay~lpil~~l~~~~~~~~~~~~~~~aLil~PtreLa~Q~~~~~~~l~~~~~~~v~~~~gg~~~~~~~~---~~ 209 (475)
T PRK01297 133 TGTGKTAAFLISIINQLLQTPPPKERYMGEPRALIIAPTRELVVQIAKDAAALTKYTGLNVMTFVGGMDFDKQLK---QL 209 (475)
T ss_pred CCChHHHHHHHHHHHHHHhcCcccccccCCceEEEEeCcHHHHHHHHHHHHHhhccCCCEEEEEEccCChHHHHH---HH
Confidence 3456753 444555554332 34789999999877666555543 4778888999876544333 33
Q ss_pred hcCCCceEEEEeccccc-----cccCcCccCEEEE
Q psy2046 86 NRDQDLFAFLLSTKAGG-----LGINLTAADTVII 115 (138)
Q Consensus 86 ~~~~~~~vll~~~~~~~-----~Gl~l~~~~~vi~ 115 (138)
..+ ...+++.++...- ..+.+...+.+|+
T Consensus 210 ~~~-~~~Iiv~TP~~Ll~~~~~~~~~l~~l~~lVi 243 (475)
T PRK01297 210 EAR-FCDILVATPGRLLDFNQRGEVHLDMVEVMVL 243 (475)
T ss_pred hCC-CCCEEEECHHHHHHHHHcCCcccccCceEEe
Confidence 222 3345666655432 2344556666666
No 350
>PRK05928 hemD uroporphyrinogen-III synthase; Reviewed
Probab=50.57 E-value=80 Score=21.65 Aligned_cols=43 Identities=30% Similarity=0.356 Sum_probs=28.0
Q ss_pred chHHHHHHHHHHhhhCCCeEEEEeccHHHHHHHHHHHhhcCCeE
Q psy2046 23 GKLKKLDEILPDLKKNGHRVLIFSQFIFVLDILGHYMDIRGWRH 66 (138)
Q Consensus 23 ~K~~~l~~ll~~~~~~~~k~iif~~~~~~~~~l~~~l~~~g~~~ 66 (138)
+....+.+.+......++++++.+.. ...+.+.+.|.+.|..+
T Consensus 109 ~~~~~l~~~l~~~~~~~~~ili~~~~-~~~~~l~~~L~~~G~~v 151 (249)
T PRK05928 109 GESSELLLELPELLLKGKRVLYLRGN-GGREVLGDTLEERGAEV 151 (249)
T ss_pred CcChHHHHhChhhhcCCCEEEEECCC-CCHHHHHHHHHHCCCEE
Confidence 34455555554433357787777765 45678889999888764
No 351
>TIGR02196 GlrX_YruB Glutaredoxin-like protein, YruB-family. This glutaredoxin-like protein family contains the conserved CxxC motif and includes the Clostridium pasteurianum protein YruB which has been cloned from a rubredoxin operon. Somewhat related to NrdH, it is unknown whether this protein actually interacts with glutathione/glutathione reducatase, or, like NrdH, some other reductant system.
Probab=50.34 E-value=38 Score=17.93 Aligned_cols=49 Identities=10% Similarity=0.189 Sum_probs=32.6
Q ss_pred EEEe-ccHHHHHHHHHHHhhcCCeEEEEeCCCChHHHHHHHHHHhcCCCc
Q psy2046 43 LIFS-QFIFVLDILGHYMDIRGWRHLRLDGATQVSSRQELIDEYNRDQDL 91 (138)
Q Consensus 43 iif~-~~~~~~~~l~~~l~~~g~~~~~i~g~~~~~~R~~~~~~F~~~~~~ 91 (138)
.+|+ ........+...|++.++.+..++-......+....+.+....-+
T Consensus 3 ~lf~~~~C~~C~~~~~~l~~~~i~~~~vdi~~~~~~~~~~~~~~~~~~vP 52 (74)
T TIGR02196 3 KVYTTPWCPPCKKAKEYLTSKGIAFEEIDVEKDSAAREEVLKVLGQRGVP 52 (74)
T ss_pred EEEcCCCChhHHHHHHHHHHCCCeEEEEeccCCHHHHHHHHHHhCCCccc
Confidence 3444 344556777788888899988887766656666667777544444
No 352
>PRK06352 threonine synthase; Validated
Probab=50.30 E-value=1.1e+02 Score=22.97 Aligned_cols=66 Identities=12% Similarity=0.014 Sum_probs=50.6
Q ss_pred ccCchHHHHHHHHHHhhhCCCeEEEEeccHHHHHHHHHHHhhcCCeEEEEeCCC-ChHHHHHHHHHH
Q psy2046 20 VESGKLKKLDEILPDLKKNGHRVLIFSQFIFVLDILGHYMDIRGWRHLRLDGAT-QVSSRQELIDEY 85 (138)
Q Consensus 20 ~~s~K~~~l~~ll~~~~~~~~k~iif~~~~~~~~~l~~~l~~~g~~~~~i~g~~-~~~~R~~~~~~F 85 (138)
.-|-|.+....++....+.+.+.||=+..-+....++.+-...|+++..+-... ....+...++.|
T Consensus 55 tGS~KdR~a~~~i~~a~~~g~~~vV~aSsGN~G~AlA~~aa~~G~~~~ivvp~~~~~~~k~~~~~a~ 121 (351)
T PRK06352 55 TGSFKDRGMVMAVAKAKEEGAEAVICASTGNTSAAAAAYATRAGLKAYIVIPEGKVALGKLAQAVMY 121 (351)
T ss_pred ccChHHHHHHHHHHHHHHCCCCEEEEECCcHHHHHHHHHHHHcCCcEEEEEeCCCCcHHHHHHHHhc
Confidence 457899988888888777777777776667777888888888899988877654 356676777777
No 353
>PRK07920 lipid A biosynthesis lauroyl acyltransferase; Provisional
Probab=50.27 E-value=96 Score=22.48 Aligned_cols=42 Identities=12% Similarity=0.034 Sum_probs=29.1
Q ss_pred HHHhhhCCCeEEEEeccHHHHHHHHHHHhhcCCeEEEEeCCC
Q psy2046 32 LPDLKKNGHRVLIFSQFIFVLDILGHYMDIRGWRHLRLDGAT 73 (138)
Q Consensus 32 l~~~~~~~~k~iif~~~~~~~~~l~~~l~~~g~~~~~i~g~~ 73 (138)
+.....+++.+|+++.+-...+.....+...+.+...++-..
T Consensus 100 l~~a~~~gkgvIllt~H~GnwE~~~~~l~~~~~~~~~vyr~~ 141 (298)
T PRK07920 100 LDAALAAGRGVVLALPHSGNWDMAGAWLVQHHGPFTTVAERL 141 (298)
T ss_pred HHHHHhcCCCeEEEecCCCHHHHHHHHHHHcCCCeEEEEecc
Confidence 444455677889998888888887777777666655555443
No 354
>PRK07409 threonine synthase; Validated
Probab=50.23 E-value=1e+02 Score=22.92 Aligned_cols=66 Identities=14% Similarity=0.053 Sum_probs=48.6
Q ss_pred ccCchHHHHHHHHHHhhhCCCeEEEEeccHHHHHHHHHHHhhcCCeEEEEeCCC-ChHHHHHHHHHH
Q psy2046 20 VESGKLKKLDEILPDLKKNGHRVLIFSQFIFVLDILGHYMDIRGWRHLRLDGAT-QVSSRQELIDEY 85 (138)
Q Consensus 20 ~~s~K~~~l~~ll~~~~~~~~k~iif~~~~~~~~~l~~~l~~~g~~~~~i~g~~-~~~~R~~~~~~F 85 (138)
.-|-|......++....+.+.+.||=+.+-+..-.++.+-...|+++..+-... ....+.+.++.|
T Consensus 58 tGSfKdR~a~~~l~~a~~~g~~~iv~aSsGN~g~alA~~a~~~G~~~~ivvP~~~~~~~k~~~~~~~ 124 (353)
T PRK07409 58 TGSFKDRGMTMAVTKAKEEGAKAVICASTGNTSASAAAYAARAGLKAFVLIPEGKIALGKLAQAVMY 124 (353)
T ss_pred ccchHHHHHHHHHHHHHHCCCCEEEEECCcHHHHHHHHHHHHcCCCEEEEEcCCCCchhhHHHHHhc
Confidence 356788888888887777776666666666777788888888899977666654 346677777777
No 355
>PRK06548 ribonuclease H; Provisional
Probab=50.13 E-value=67 Score=21.26 Aligned_cols=39 Identities=21% Similarity=0.362 Sum_probs=27.1
Q ss_pred hHHHHHHHHHHhhhCCCeEEEEeccHHHHHHHHHHHhhc
Q psy2046 24 KLKKLDEILPDLKKNGHRVLIFSQFIFVLDILGHYMDIR 62 (138)
Q Consensus 24 K~~~l~~ll~~~~~~~~k~iif~~~~~~~~~l~~~l~~~ 62 (138)
=+..+...+..+.....++.||+++.-.++.+..++...
T Consensus 46 El~Aii~aL~~~~~~~~~v~I~TDS~yvi~~i~~W~~~W 84 (161)
T PRK06548 46 ELTAVRELLIATRHTDRPILILSDSKYVINSLTKWVYSW 84 (161)
T ss_pred HHHHHHHHHHhhhcCCceEEEEeChHHHHHHHHHHHHHH
Confidence 344555555443334467999999999999998887653
No 356
>PRK14045 1-aminocyclopropane-1-carboxylate deaminase; Provisional
Probab=49.90 E-value=1e+02 Score=22.73 Aligned_cols=65 Identities=17% Similarity=0.112 Sum_probs=44.4
Q ss_pred cCchHHHHHHHHHHhhhCCCeEEEE--eccHHHHHHHHHHHhhcCCeEEEEeCCC-ChHHHHHHHHHH
Q psy2046 21 ESGKLKKLDEILPDLKKNGHRVLIF--SQFIFVLDILGHYMDIRGWRHLRLDGAT-QVSSRQELIDEY 85 (138)
Q Consensus 21 ~s~K~~~l~~ll~~~~~~~~k~iif--~~~~~~~~~l~~~l~~~g~~~~~i~g~~-~~~~R~~~~~~F 85 (138)
.+.|...+..++.+..+.+.+.||. +.+-+....++-+-+..|+++..+-... +...+...++.|
T Consensus 51 gg~K~R~~~~~l~~a~~~G~~~vv~~~~ssGN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~l~~~~ 118 (329)
T PRK14045 51 GGNKIRKLEYLLGDALSRGADVVITVGAVHSNHAFVTGLAAKKLGLDAVLVLRGKEELKGNYLLDKIM 118 (329)
T ss_pred CcchHHHHHhHHHHHHHcCCCEEEEeCccHHHHHHHHHHHHHHcCCeEEEEEeCCCCCCcCHHHHHHC
Confidence 3689999999988877777666664 4555777888888888899976554433 323243455665
No 357
>TIGR03191 benz_CoA_bzdO benzoyl-CoA reductase, bzd-type, O subunit. Members of this family are the O subunit of one of two related types of four-subunit ATP-dependent benzoyl-CoA reductase. This enzyme system catalyzes the dearomatization of benzoyl-CoA, a common intermediate in pathways for the degradation for a number of different aromatic compounds, such as phenol and toluene.
Probab=49.86 E-value=98 Score=24.00 Aligned_cols=52 Identities=10% Similarity=-0.026 Sum_probs=34.9
Q ss_pred CchHHHHHHHHHHhhhCCCeEEEEeccH-----HHHHHHHHHHhhcCCeEEEEeCCCCh
Q psy2046 22 SGKLKKLDEILPDLKKNGHRVLIFSQFI-----FVLDILGHYMDIRGWRHLRLDGATQV 75 (138)
Q Consensus 22 s~K~~~l~~ll~~~~~~~~k~iif~~~~-----~~~~~l~~~l~~~g~~~~~i~g~~~~ 75 (138)
..++..+.+++++..-. -+|.+++.- .....+.+.+++.|+|+..+.|+.+.
T Consensus 347 ~~R~~~l~~li~e~~vD--GVI~~~~~~C~~~s~e~~~ik~~l~~~GIP~L~ietD~~d 403 (430)
T TIGR03191 347 RIKSEMMLNIARDWNVD--GCMLHLNRGCEGLSIGIMENRLAIAKAGIPIMTFEGNMGD 403 (430)
T ss_pred hHHHHHHHHHHHHHCCC--EEEEcCCCCCccchHhHHHHHHHHHHcCCCEEEEECCCCC
Confidence 34777788887765433 355554322 22345778888899999999998764
No 358
>TIGR00644 recJ single-stranded-DNA-specific exonuclease RecJ. All proteins in this family are 5'-3' single-strand DNA exonucleases. These proteins are used in some aspects of mismatch repair, recombination, and recombinational repair.
Probab=49.78 E-value=1.3e+02 Score=23.98 Aligned_cols=45 Identities=20% Similarity=0.262 Sum_probs=32.5
Q ss_pred hHHHHHHHHHHhhhCCCeEEEEeccHH----HHHHHHHHHhhcCCeEEE
Q psy2046 24 KLKKLDEILPDLKKNGHRVLIFSQFIF----VLDILGHYMDIRGWRHLR 68 (138)
Q Consensus 24 K~~~l~~ll~~~~~~~~k~iif~~~~~----~~~~l~~~l~~~g~~~~~ 68 (138)
.+....+.+.+..+++++++||+++.. ..-.+...|+..|..+..
T Consensus 39 ~~~~a~~~i~~~i~~~~~I~I~gh~D~DGi~S~~~L~~~L~~~g~~v~~ 87 (539)
T TIGR00644 39 DMEKAVERIIEAIENNEKILIFGDYDVDGITSTAILVEFLKDLGVNVDY 87 (539)
T ss_pred CHHHHHHHHHHHHhcCCeEEEEEccCCCcHHHHHHHHHHHHHCCCceEE
Confidence 466666666666677889999999863 255788888888877543
No 359
>cd08187 BDH Butanol dehydrogenase catalyzes the conversion of butyraldehyde to butanol with the cofactor NAD(P)H being oxidized in the process. The butanol dehydrogenase (BDH) is involved in the final step of the butanol formation pathway in anaerobic micro-organism. Butanol dehydrogenase catalyzes the conversion of butyraldehyde to butanol with the cofactor NAD(P)H being oxidized in the process. Activity in the reverse direction was 50-fold lower than that in the forward direction. The NADH-BDH had higher activity with longer chained aldehydes and was inhibited by metabolites containing an adenine moiety. This protein family belongs to the so-called iron-containing alcohol dehydrogenase superfamily. Since members of this superfamily use different divalent ions, preferentially iron or zinc, it has been suggested to be renamed to family III metal-dependent polyol dehydrogenases.
Probab=49.71 E-value=1.1e+02 Score=23.07 Aligned_cols=71 Identities=18% Similarity=0.252 Sum_probs=44.5
Q ss_pred CCcccccCchHHHHHHHHHHhhhCCCeEEEEeccH-----HHHHHHHHHHhhcCCeEEEEeCCC---ChHHHHHHHHHHh
Q psy2046 15 PDDLVVESGKLKKLDEILPDLKKNGHRVLIFSQFI-----FVLDILGHYMDIRGWRHLRLDGAT---QVSSRQELIDEYN 86 (138)
Q Consensus 15 ~~~~~~~s~K~~~l~~ll~~~~~~~~k~iif~~~~-----~~~~~l~~~l~~~g~~~~~i~g~~---~~~~R~~~~~~F~ 86 (138)
|..+.--.+.+..+.+.++.+ ++|++|.+... ...+.+.+.|+..|+.+..+.+-. +.+.-.+.++.++
T Consensus 7 p~~i~~G~g~~~~l~~~~~~~---~~r~livt~~~~~~~~~~~~~v~~~L~~~g~~~~~~~~v~~~p~~~~v~~~~~~~~ 83 (382)
T cd08187 7 PTKIIFGKGTESELGKELKKY---GKKVLLVYGGGSIKKNGLYDRVIASLKEAGIEVVELGGVEPNPRLETVREGIELCK 83 (382)
T ss_pred CCEEEECCCHHHHHHHHHHHh---CCEEEEEeCCcHHHhcCcHHHHHHHHHHcCCeEEEECCccCCCCHHHHHHHHHHHH
Confidence 333333446677777777654 56888887532 125778889988888877766532 3345555666666
Q ss_pred cC
Q psy2046 87 RD 88 (138)
Q Consensus 87 ~~ 88 (138)
..
T Consensus 84 ~~ 85 (382)
T cd08187 84 EE 85 (382)
T ss_pred Hc
Confidence 44
No 360
>PRK04296 thymidine kinase; Provisional
Probab=49.50 E-value=44 Score=22.47 Aligned_cols=27 Identities=30% Similarity=0.463 Sum_probs=22.3
Q ss_pred cCchHHHHHHHHHHhhhCCCeEEEEec
Q psy2046 21 ESGKLKKLDEILPDLKKNGHRVLIFSQ 47 (138)
Q Consensus 21 ~s~K~~~l~~ll~~~~~~~~k~iif~~ 47 (138)
-++|-..+..++......+.++++|.+
T Consensus 12 GsGKTT~~l~~~~~~~~~g~~v~i~k~ 38 (190)
T PRK04296 12 NSGKSTELLQRAYNYEERGMKVLVFKP 38 (190)
T ss_pred CCHHHHHHHHHHHHHHHcCCeEEEEec
Confidence 468999999999888778889998854
No 361
>PF12622 NpwBP: mRNA biogenesis factor
Probab=49.40 E-value=9.9 Score=19.79 Aligned_cols=12 Identities=33% Similarity=0.534 Sum_probs=9.5
Q ss_pred EEEEeCCCCCcc
Q psy2046 112 TVIIHDVDFNPY 123 (138)
Q Consensus 112 ~vi~~~~~~~~~ 123 (138)
.-|+||+.||+.
T Consensus 3 kSiyydP~~NP~ 14 (48)
T PF12622_consen 3 KSIYYDPELNPL 14 (48)
T ss_pred cceecCCccCCC
Confidence 348899999984
No 362
>COG2241 CobL Precorrin-6B methylase 1 [Coenzyme metabolism]
Probab=49.34 E-value=28 Score=24.20 Aligned_cols=34 Identities=24% Similarity=0.299 Sum_probs=28.1
Q ss_pred HHHhhhCCCeEEEEeccHHHHHHHHHHHhhcCCe
Q psy2046 32 LPDLKKNGHRVLIFSQFIFVLDILGHYMDIRGWR 65 (138)
Q Consensus 32 l~~~~~~~~k~iif~~~~~~~~~l~~~l~~~g~~ 65 (138)
+..+...+.+++++++....-..++..|.+.|+.
T Consensus 133 l~~~~~~~~~~vil~~~~~~P~~IA~~L~~~G~~ 166 (210)
T COG2241 133 LRPLLENGRRLVILTPDDFGPAEIAKLLTENGIG 166 (210)
T ss_pred HHHHHhCCceEEEeCCCCCCHHHHHHHHHhCCCC
Confidence 3333457889999999999999999999999875
No 363
>PF14417 MEDS: MEDS: MEthanogen/methylotroph, DcmR Sensory domain
Probab=49.15 E-value=43 Score=22.52 Aligned_cols=41 Identities=17% Similarity=0.106 Sum_probs=28.1
Q ss_pred chHHHHHHHHHHhhhCCCeEEEEeccHHHHHHHHHHHhhcC
Q psy2046 23 GKLKKLDEILPDLKKNGHRVLIFSQFIFVLDILGHYMDIRG 63 (138)
Q Consensus 23 ~K~~~l~~ll~~~~~~~~k~iif~~~~~~~~~l~~~l~~~g 63 (138)
.-+..+...+.+-.+.++++++.+......+.+.+.|++.+
T Consensus 31 e~~~~~~~Fi~~GL~~ge~~l~v~~~~~~~~~l~~~L~~~~ 71 (191)
T PF14417_consen 31 ELLEVLVPFIREGLARGERCLYVAPDPRRVEELRDELRKAG 71 (191)
T ss_pred HHHHHHHHHHHHHHHCCCeEEEEECCCCCHHHHHHHHHhcC
Confidence 34556666676667788898888874555667777776543
No 364
>cd02067 B12-binding B12 binding domain (B12-BD). This domain binds different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide, it is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins.
Probab=48.54 E-value=61 Score=19.71 Aligned_cols=13 Identities=15% Similarity=0.294 Sum_probs=5.6
Q ss_pred HHHHHHhhcCCeE
Q psy2046 54 ILGHYMDIRGWRH 66 (138)
Q Consensus 54 ~l~~~l~~~g~~~ 66 (138)
.+...|+..|+.+
T Consensus 18 ~~~~~l~~~G~~V 30 (119)
T cd02067 18 IVARALRDAGFEV 30 (119)
T ss_pred HHHHHHHHCCCEE
Confidence 3444444444444
No 365
>PF13361 UvrD_C: UvrD-like helicase C-terminal domain; PDB: 1UAA_B 3U4Q_A 3U44_A 1W36_B 3K70_B 2IS6_B 3LFU_A 2IS2_B 2IS1_B 2IS4_A ....
Probab=48.50 E-value=99 Score=22.15 Aligned_cols=51 Identities=14% Similarity=0.240 Sum_probs=33.9
Q ss_pred HHHHHHHHhhhCC---CeEEEEeccHHHHHHHHHHHhhcCCeEEEEeCCCChHHH
Q psy2046 27 KLDEILPDLKKNG---HRVLIFSQFIFVLDILGHYMDIRGWRHLRLDGATQVSSR 78 (138)
Q Consensus 27 ~l~~ll~~~~~~~---~k~iif~~~~~~~~~l~~~l~~~g~~~~~i~g~~~~~~R 78 (138)
.+.+-+..+...+ ..+-|.+........++++|...|+++ .+.++.+..++
T Consensus 62 ~i~~~I~~l~~~~~~~~diAVL~R~~~~~~~i~~~L~~~gIp~-~~~~~~~~~~~ 115 (351)
T PF13361_consen 62 YIAEEIKELIRNGIPPSDIAVLVRTNSQIKEIEDALKEAGIPY-RISGSKSLFES 115 (351)
T ss_dssp HHHHHHHHHHHTTS-GGGEEEEESSGGHHHHHHHHHHHTTS-E-EESSSSBGGGS
T ss_pred HHHHHHHHHhhcCCCcccEEEEEECchhHHHHHHHHhhhccee-Eeccccchhcc
Confidence 3444444443332 467777777899999999999999997 66666544443
No 366
>TIGR02181 GRX_bact Glutaredoxin, GrxC family. This family of glutaredoxins includes the E. coli protein GrxC (Grx3) which appears to have a secondary role in reducing ribonucleotide reductase (in the absence of GrxA) possibly indicating a role in the reduction of other protein disulfides.
Probab=48.38 E-value=47 Score=18.41 Aligned_cols=37 Identities=8% Similarity=0.094 Sum_probs=26.9
Q ss_pred ccHHHHHHHHHHHhhcCCeEEEEeCCCChHHHHHHHH
Q psy2046 47 QFIFVLDILGHYMDIRGWRHLRLDGATQVSSRQELID 83 (138)
Q Consensus 47 ~~~~~~~~l~~~l~~~g~~~~~i~g~~~~~~R~~~~~ 83 (138)
+..........+|.+.|+++..++-...+..+++..+
T Consensus 7 ~~Cp~C~~a~~~L~~~~i~~~~~di~~~~~~~~~~~~ 43 (79)
T TIGR02181 7 PYCPYCTRAKALLSSKGVTFTEIRVDGDPALRDEMMQ 43 (79)
T ss_pred CCChhHHHHHHHHHHcCCCcEEEEecCCHHHHHHHHH
Confidence 3445677888888899999888887776666655444
No 367
>PLN02723 3-mercaptopyruvate sulfurtransferase
Probab=48.21 E-value=74 Score=23.42 Aligned_cols=48 Identities=13% Similarity=-0.038 Sum_probs=32.7
Q ss_pred HHHHHHHHh-hhCCCeEEEEeccHHHHHHHHHHHhhcCCe-EEEEeCCCC
Q psy2046 27 KLDEILPDL-KKNGHRVLIFSQFIFVLDILGHYMDIRGWR-HLRLDGATQ 74 (138)
Q Consensus 27 ~l~~ll~~~-~~~~~k~iif~~~~~~~~~l~~~l~~~g~~-~~~i~g~~~ 74 (138)
.+.+++... ...++.+|+||..-...-...-.|+..|++ +..++|+..
T Consensus 256 el~~~~~~~gi~~~~~iv~yC~sG~~A~~~~~~L~~~G~~~v~~YdGs~~ 305 (320)
T PLN02723 256 ELKKRFEQEGISLDSPIVASCGTGVTACILALGLHRLGKTDVPVYDGSWT 305 (320)
T ss_pred HHHHHHHhcCCCCCCCEEEECCcHHHHHHHHHHHHHcCCCCeeEeCCCHH
Confidence 344444432 234678999998876666777778888886 668888764
No 368
>KOG0389|consensus
Probab=48.13 E-value=1.8e+02 Score=24.91 Aligned_cols=76 Identities=18% Similarity=0.196 Sum_probs=41.3
Q ss_pred chHHHHHHHHHHhhh---CCCeEEEEeccHHHHHHHHHHHhhc--CCeEEEEeCCCChHHHHHHHHHHhcCC-CceEEEE
Q psy2046 23 GKLKKLDEILPDLKK---NGHRVLIFSQFIFVLDILGHYMDIR--GWRHLRLDGATQVSSRQELIDEYNRDQ-DLFAFLL 96 (138)
Q Consensus 23 ~K~~~l~~ll~~~~~---~~~k~iif~~~~~~~~~l~~~l~~~--g~~~~~i~g~~~~~~R~~~~~~F~~~~-~~~vll~ 96 (138)
+|...++..+..+.+ +|.. +|.++.-. ++.....|.+. .+.+..|||+. .+|.++-..++.++ ...|+|.
T Consensus 430 GKTiQvIaFlayLkq~g~~gpH-LVVvPsST-leNWlrEf~kwCPsl~Ve~YyGSq--~ER~~lR~~i~~~~~~ydVllT 505 (941)
T KOG0389|consen 430 GKTIQVIAFLAYLKQIGNPGPH-LVVVPSST-LENWLREFAKWCPSLKVEPYYGSQ--DERRELRERIKKNKDDYDVLLT 505 (941)
T ss_pred cchhHHHHHHHHHHHcCCCCCc-EEEecchh-HHHHHHHHHHhCCceEEEeccCcH--HHHHHHHHHHhccCCCccEEEE
Confidence 455544444444433 3433 44444322 22222222222 45688899954 79999999998553 3455666
Q ss_pred eccccc
Q psy2046 97 STKAGG 102 (138)
Q Consensus 97 ~~~~~~ 102 (138)
+...++
T Consensus 506 TY~la~ 511 (941)
T KOG0389|consen 506 TYNLAA 511 (941)
T ss_pred Eeeccc
Confidence 655544
No 369
>TIGR00260 thrC threonine synthase. Involved in threonine biosynthesis it catalyses the reaction O-PHOSPHO-L-HOMOSERINE + H(2)O = L-THREONINE + ORTHOPHOSPHATE using pyridoxal phosphate as a cofactor. the enzyme is distantly related to the serine/threonine dehydratases which are also pyridoxal-phosphate dependent enzymes. the pyridoxal-phosphate binding site is a Lys (K) residues present at residue 70 of the model.
Probab=48.11 E-value=1.1e+02 Score=22.45 Aligned_cols=66 Identities=14% Similarity=-0.014 Sum_probs=46.3
Q ss_pred ccCchHHHHHHHHHHhhhCCCeEEEEeccHHHHHHHHHHHhhcCCeEEEEeCCC-ChHHHHHHHHHH
Q psy2046 20 VESGKLKKLDEILPDLKKNGHRVLIFSQFIFVLDILGHYMDIRGWRHLRLDGAT-QVSSRQELIDEY 85 (138)
Q Consensus 20 ~~s~K~~~l~~ll~~~~~~~~k~iif~~~~~~~~~l~~~l~~~g~~~~~i~g~~-~~~~R~~~~~~F 85 (138)
.-|-|...+..++....+.+...||=+..-+..-.++.+-...|+++..+.... ....+...++.+
T Consensus 51 tGSfKdR~a~~~l~~a~~~g~~~vv~aSsGN~g~a~A~~a~~~g~~~~v~~p~~~~s~~k~~~~~~~ 117 (328)
T TIGR00260 51 TLSFKDRGMAVALTKALELGNDTVLCASTGNTGAAAAAYAGKAGVKVVILYPAGKISLGKLAQALGY 117 (328)
T ss_pred chhhHhhhHHHHHHHHHHcCCCEEEEeCCcHHHHHHHHHhccCCCcEEEEECCCCCCHHHHHHHHhc
Confidence 345677777788877767676666666666777788877777899987777764 345666666655
No 370
>KOG0329|consensus
Probab=47.87 E-value=79 Score=23.09 Aligned_cols=72 Identities=10% Similarity=0.080 Sum_probs=49.2
Q ss_pred eEEEEeccHHHHHHHHHHHhhc-----CCeEEEEeCCCChHHHHHHHHHHhcCCCceEEEEeccc-----cccccCcCcc
Q psy2046 41 RVLIFSQFIFVLDILGHYMDIR-----GWRHLRLDGATQVSSRQELIDEYNRDQDLFAFLLSTKA-----GGLGINLTAA 110 (138)
Q Consensus 41 k~iif~~~~~~~~~l~~~l~~~-----g~~~~~i~g~~~~~~R~~~~~~F~~~~~~~vll~~~~~-----~~~Gl~l~~~ 110 (138)
.++|.|+.++.+-.+.....+. +.++++++|+++.+.-++.+.. .+.+++.++.- -...++|...
T Consensus 112 svlvmchtrelafqi~~ey~rfskymP~vkvaVFfGG~~Ikkdee~lk~-----~PhivVgTPGrilALvr~k~l~lk~v 186 (387)
T KOG0329|consen 112 SVLVMCHTRELAFQISKEYERFSKYMPSVKVSVFFGGLFIKKDEELLKN-----CPHIVVGTPGRILALVRNRSLNLKNV 186 (387)
T ss_pred EEEEEeccHHHHHHHHHHHHHHHhhCCCceEEEEEcceeccccHHHHhC-----CCeEEEcCcHHHHHHHHhccCchhhc
Confidence 6889999888766666554432 6789999999987777666664 44556655432 3366777777
Q ss_pred CEEEEeC
Q psy2046 111 DTVIIHD 117 (138)
Q Consensus 111 ~~vi~~~ 117 (138)
.|-++-+
T Consensus 187 khFvlDE 193 (387)
T KOG0329|consen 187 KHFVLDE 193 (387)
T ss_pred ceeehhh
Confidence 7777644
No 371
>PF05221 AdoHcyase: S-adenosyl-L-homocysteine hydrolase; InterPro: IPR000043 Adenosylhomocysteinase (S-adenosyl-L-homocysteine hydrolase, 3.3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. This enzyme is ubiquitous, highly conserved, and may play a key role in the regulation of the intracellular concentration of adenosylhomocysteine. AdoHcyase requires NAD+ as a cofactor and contains a central glycine-rich region which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity, 0006730 one-carbon metabolic process; PDB: 3N58_B 3H9U_C 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 1K0U_F 1B3R_A 1XWF_D ....
Probab=47.38 E-value=83 Score=22.82 Aligned_cols=60 Identities=17% Similarity=0.026 Sum_probs=37.9
Q ss_pred chHHHHHHHHHHhhhCCCeEEEEeccH-HHHHHHHHHHhhcCCeEEEEeCCCChHHHHHHHHHH
Q psy2046 23 GKLKKLDEILPDLKKNGHRVLIFSQFI-FVLDILGHYMDIRGWRHLRLDGATQVSSRQELIDEY 85 (138)
Q Consensus 23 ~K~~~l~~ll~~~~~~~~k~iif~~~~-~~~~~l~~~l~~~g~~~~~i~g~~~~~~R~~~~~~F 85 (138)
.|...|.+.|.. -|-.|.+-+..+ .+.|.++.+|.+.|+++...+|.+..+....+-+..
T Consensus 54 ~kTA~L~~tL~a---~GAeV~~~~sNplSTQDdvaAAL~~~Gi~V~A~~get~eey~~~i~~~L 114 (268)
T PF05221_consen 54 AKTAVLAETLKA---LGAEVRWTGSNPLSTQDDVAAALAEEGIPVFAWKGETDEEYWWCIEKAL 114 (268)
T ss_dssp HHHHHHHHHHHH---TTEEEEEEESSTTT--HHHHHHHHHTTEEEEE-TT--HHHHHHHHHHCH
T ss_pred HHHHHHHHHHHH---cCCeEEEecCCCcccchHHHHHhccCCceEEEeCCCCHHHHHHHHHHHh
Confidence 567777777654 465666655554 778899999999999999999977655554444433
No 372
>TIGR02634 xylF D-xylose ABC transporter, substrate-binding protein. Members of this family are periplasmic (when in Gram-negative bacteria) binding proteins for D-xylose import by a high-affinity ATP-binding cassette (ABC) transporter.
Probab=47.28 E-value=1e+02 Score=22.03 Aligned_cols=62 Identities=15% Similarity=0.106 Sum_probs=28.6
Q ss_pred HHHHHHHHHHh-hhCCCeEEEEeccHH---HHHHHHHHHhhcCCeEEEEeCCCChHHHHHHHHHHhcC
Q psy2046 25 LKKLDEILPDL-KKNGHRVLIFSQFIF---VLDILGHYMDIRGWRHLRLDGATQVSSRQELIDEYNRD 88 (138)
Q Consensus 25 ~~~l~~ll~~~-~~~~~k~iif~~~~~---~~~~l~~~l~~~g~~~~~i~g~~~~~~R~~~~~~F~~~ 88 (138)
+..+.+-+.+. .+.|-.++++..... ..+.+.. +...++....+.+..+. .-...++..+..
T Consensus 13 ~~~~~~~i~~~a~~~g~~v~~~~~~~~~~~q~~~i~~-l~~~~vDgIIi~~~~~~-~~~~~l~~~~~~ 78 (302)
T TIGR02634 13 WQKDRDIFVAAAESLGAKVFVQSANGNEAKQISQIEN-LIARGVDVLVIIPQNGQ-VLSNAVQEAKDE 78 (302)
T ss_pred HHHHHHHHHHHHHhcCCEEEEEeCCCCHHHHHHHHHH-HHHcCCCEEEEeCCChh-HHHHHHHHHHHC
Confidence 34444444443 344556655543211 2233333 44556776777654332 223445555544
No 373
>PF04312 DUF460: Protein of unknown function (DUF460); InterPro: IPR007408 This is an archaeal protein of unknown function.
Probab=47.17 E-value=37 Score=21.97 Aligned_cols=63 Identities=16% Similarity=0.236 Sum_probs=44.6
Q ss_pred cCchHHHHHHHHHHhhhCCCeEEEEeccH---HHHHHHHHHHhhcCCeEEEEeCCCChHHHHHHHHHHh
Q psy2046 21 ESGKLKKLDEILPDLKKNGHRVLIFSQFI---FVLDILGHYMDIRGWRHLRLDGATQVSSRQELIDEYN 86 (138)
Q Consensus 21 ~s~K~~~l~~ll~~~~~~~~k~iif~~~~---~~~~~l~~~l~~~g~~~~~i~g~~~~~~R~~~~~~F~ 86 (138)
.|.|--...+++..+.+.|..+||-++-. ...+.|+..|... ...-..+++.+++.++.+.|.
T Consensus 58 ~S~R~~~~~evi~~I~~~G~PviVAtDV~p~P~~V~Kia~~f~A~---ly~P~~dlsveeK~~l~~~~~ 123 (138)
T PF04312_consen 58 KSSRNMSRSEVIEWISEYGKPVIVATDVSPPPETVKKIARSFNAV---LYTPERDLSVEEKQELAREYS 123 (138)
T ss_pred EeecCCCHHHHHHHHHHcCCEEEEEecCCCCcHHHHHHHHHhCCc---ccCCCCcCCHHHHHHHHHhhC
Confidence 34555555667777778899999988755 5566777776543 233455789999999999986
No 374
>PRK09427 bifunctional indole-3-glycerol phosphate synthase/phosphoribosylanthranilate isomerase; Provisional
Probab=47.16 E-value=1.4e+02 Score=23.45 Aligned_cols=41 Identities=12% Similarity=0.073 Sum_probs=32.1
Q ss_pred CCeEEEEeccHHHHHHHHHHHhhcCCeEEEEeCCCChHHHHHH
Q psy2046 39 GHRVLIFSQFIFVLDILGHYMDIRGWRHLRLDGATQVSSRQEL 81 (138)
Q Consensus 39 ~~k~iif~~~~~~~~~l~~~l~~~g~~~~~i~g~~~~~~R~~~ 81 (138)
-++|.||++. ..+.+.+.++..++.++.+||..+++.-..+
T Consensus 307 v~~VgVfv~~--~~~~i~~i~~~~~lD~vQLHG~e~~~~~~~l 347 (454)
T PRK09427 307 LRYVGVFRNA--DIEDIVDIAKQLSLAAVQLHGDEDQAYIDAL 347 (454)
T ss_pred CCEEEEEeCC--CHHHHHHHHHHcCCCEEEeCCCCCHHHHHHH
Confidence 5689999874 4578888888889999999998877654443
No 375
>CHL00200 trpA tryptophan synthase alpha subunit; Provisional
Probab=47.05 E-value=1.1e+02 Score=22.08 Aligned_cols=55 Identities=18% Similarity=0.154 Sum_probs=30.3
Q ss_pred HHHHhhhCCCeEEEEeccH-HHHHHHHHHHhhcCCeEEEEeCCCChHHHHHHHHHH
Q psy2046 31 ILPDLKKNGHRVLIFSQFI-FVLDILGHYMDIRGWRHLRLDGATQVSSRQELIDEY 85 (138)
Q Consensus 31 ll~~~~~~~~k~iif~~~~-~~~~~l~~~l~~~g~~~~~i~g~~~~~~R~~~~~~F 85 (138)
.+++..+.|-..+++-+.+ +..+.+.+.+++.|+....+-..++..+|.+.+.+-
T Consensus 111 F~~~~~~aGvdgviipDLP~ee~~~~~~~~~~~gi~~I~lv~PtT~~eri~~i~~~ 166 (263)
T CHL00200 111 FIKKISQAGVKGLIIPDLPYEESDYLISVCNLYNIELILLIAPTSSKSRIQKIARA 166 (263)
T ss_pred HHHHHHHcCCeEEEecCCCHHHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHHh
Confidence 3333344444444444333 334455566666677777777766666666666654
No 376
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=46.89 E-value=29 Score=25.03 Aligned_cols=38 Identities=13% Similarity=0.240 Sum_probs=25.8
Q ss_pred hHHHHHHHHHHhhhCCCeEEEEeccH------HHHHHHHHHHhh
Q psy2046 24 KLKKLDEILPDLKKNGHRVLIFSQFI------FVLDILGHYMDI 61 (138)
Q Consensus 24 K~~~l~~ll~~~~~~~~k~iif~~~~------~~~~~l~~~l~~ 61 (138)
-+..|-.++..+...++|+||||+-- .....|+..|..
T Consensus 123 dl~~Lp~l~~~Lr~~~~kFIlFcDDLSFe~gd~~yK~LKs~LeG 166 (287)
T COG2607 123 DLATLPDLVELLRARPEKFILFCDDLSFEEGDDAYKALKSALEG 166 (287)
T ss_pred HHhhHHHHHHHHhcCCceEEEEecCCCCCCCchHHHHHHHHhcC
Confidence 35556666776777889999999754 234566666653
No 377
>KOG1803|consensus
Probab=46.81 E-value=29 Score=28.11 Aligned_cols=39 Identities=28% Similarity=0.393 Sum_probs=34.8
Q ss_pred CchHHHHHHHHHHhhhCCCeEEEEeccHHHHHHHHHHHh
Q psy2046 22 SGKLKKLDEILPDLKKNGHRVLIFSQFIFVLDILGHYMD 60 (138)
Q Consensus 22 s~K~~~l~~ll~~~~~~~~k~iif~~~~~~~~~l~~~l~ 60 (138)
.+|...+.++|..+...+++++|-.++...+|.+-+.|.
T Consensus 212 TGKT~TlvEiI~qlvk~~k~VLVcaPSn~AVdNiverl~ 250 (649)
T KOG1803|consen 212 TGKTRTLVEIISQLVKQKKRVLVCAPSNVAVDNIVERLT 250 (649)
T ss_pred CCceeeHHHHHHHHHHcCCeEEEEcCchHHHHHHHHHhc
Confidence 378889999999999999999999999999998888655
No 378
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=46.46 E-value=92 Score=21.17 Aligned_cols=76 Identities=20% Similarity=0.284 Sum_probs=47.0
Q ss_pred CchHHHHHHHHHHhhhCCCeEEEEecc---HHHHHHHHHHHhhcCCeEEEEeCCCCh-HHHHHHHHHHhcCCCceEEEEe
Q psy2046 22 SGKLKKLDEILPDLKKNGHRVLIFSQF---IFVLDILGHYMDIRGWRHLRLDGATQV-SSRQELIDEYNRDQDLFAFLLS 97 (138)
Q Consensus 22 s~K~~~l~~ll~~~~~~~~k~iif~~~---~~~~~~l~~~l~~~g~~~~~i~g~~~~-~~R~~~~~~F~~~~~~~vll~~ 97 (138)
.+|...+.++-..+..++.++.+.+-- ....+.|..+-+..|+++....-..++ +.-.+.+++++..+. .++|+.
T Consensus 12 vGKTTt~aKLAa~~~~~~~~v~lis~D~~R~ga~eQL~~~a~~l~vp~~~~~~~~~~~~~~~~~l~~~~~~~~-D~vlID 90 (196)
T PF00448_consen 12 VGKTTTIAKLAARLKLKGKKVALISADTYRIGAVEQLKTYAEILGVPFYVARTESDPAEIAREALEKFRKKGY-DLVLID 90 (196)
T ss_dssp SSHHHHHHHHHHHHHHTT--EEEEEESTSSTHHHHHHHHHHHHHTEEEEESSTTSCHHHHHHHHHHHHHHTTS-SEEEEE
T ss_pred CchHhHHHHHHHHHhhccccceeecCCCCCccHHHHHHHHHHHhccccchhhcchhhHHHHHHHHHHHhhcCC-CEEEEe
Confidence 578888888777766667776655532 255778888888888887665544433 334467777765433 346665
Q ss_pred c
Q psy2046 98 T 98 (138)
Q Consensus 98 ~ 98 (138)
|
T Consensus 91 T 91 (196)
T PF00448_consen 91 T 91 (196)
T ss_dssp E
T ss_pred c
Confidence 4
No 379
>PF03279 Lip_A_acyltrans: Bacterial lipid A biosynthesis acyltransferase; InterPro: IPR004960 Bacterial lipopolysachharides (LPS) are glycolipids that make up the outer monolayer of the outer membranes of most Gram-negative bacteria. Though LPS moleculesare variable, they all show the same general features: an outer polysaccharide which is attached to the lipid component, termed lipid A []. The polysaccharide component consists of a variable repeat-structure polysaccharide known as the O-antigen, and a highly conserved short core oligosaccharide which connects the O-antigen to lipid A. Lipid A is a glucosamine-based phospholipid that makes up the membrane anchor region of LPS []. The structure of lipid A is relatively invariant between species, presumably reflecting its fundamental role in membrane integrity. Recognition of lipid A by the innate immune system can lead to a response even at picomolar levels. In some genera, such as Neisseria and Haemophilus, lipooligosaccharides (LOS) are the predominant glycolipids []. These are analogous to LPS except that they lack O-antigens, with the LOS oligosaccharide structures limited to 10 saccharide units. The bacterial lipid A biosynthesis protein, or lipid A biosynthesis (KDO)2-(lauroyl)-lipid IVA acyltransferase 2.3.1 from EC, transfers myristate or laurate, activated on ACP, to the lipid IVA moiety of (KDO)2-(lauroyl)-lipid IVA during lipopolysaccharide core biosynthesis.; GO: 0016746 transferase activity, transferring acyl groups, 0009244 lipopolysaccharide core region biosynthetic process, 0016021 integral to membrane
Probab=46.19 E-value=1.1e+02 Score=21.97 Aligned_cols=51 Identities=12% Similarity=0.165 Sum_probs=33.3
Q ss_pred hhCCCeEEEEeccHHHHHHHHHHHhhcCCeEEEEeCCCChHHHHHHHHHHh
Q psy2046 36 KKNGHRVLIFSQFIFVLDILGHYMDIRGWRHLRLDGATQVSSRQELIDEYN 86 (138)
Q Consensus 36 ~~~~~k~iif~~~~~~~~~l~~~l~~~g~~~~~i~g~~~~~~R~~~~~~F~ 86 (138)
.++++.+|+.+.+-...+.....|...+.+...+........-.+.+.+.+
T Consensus 117 ~~~g~gvIl~t~H~GnwE~~~~~l~~~~~~~~~i~~~~~n~~~~~~~~~~R 167 (295)
T PF03279_consen 117 LAEGRGVILLTGHFGNWELAGRALARRGPPVAVIYRPQKNPYIDRLLNKLR 167 (295)
T ss_pred HhcCCCCEEeCcCcChHHHHHHHHHhhCCceEEEecCCccHhHHHHHHHHH
Confidence 456777888888888788878888777777666666553333334444443
No 380
>COG0634 Hpt Hypoxanthine-guanine phosphoribosyltransferase [Nucleotide transport and metabolism]
Probab=45.76 E-value=33 Score=23.19 Aligned_cols=83 Identities=12% Similarity=0.221 Sum_probs=50.4
Q ss_pred hHHHHHHHHHHhhhCCCeEEEEeccHHHHHHHHHHHhhcCC-------eEEEEeCCCChHHHHHHHHHHhcCC-CceEEE
Q psy2046 24 KLKKLDEILPDLKKNGHRVLIFSQFIFVLDILGHYMDIRGW-------RHLRLDGATQVSSRQELIDEYNRDQ-DLFAFL 95 (138)
Q Consensus 24 K~~~l~~ll~~~~~~~~k~iif~~~~~~~~~l~~~l~~~g~-------~~~~i~g~~~~~~R~~~~~~F~~~~-~~~vll 95 (138)
++..+.+.+.+-.. ++..++.+-.+...-.+.+.++...+ .++.++++++.+..-+++..-..+- ...||+
T Consensus 20 ri~ela~~I~~~y~-g~~~~vv~iLkGs~~F~~dL~r~i~~~~e~dFm~vSSYg~~t~ssg~v~i~kDld~di~grdVLi 98 (178)
T COG0634 20 RIKELAAQITEDYG-GKDPLVVGVLKGSFPFMADLIRAIDFPLEVDFMHVSSYGGGTSSSGEVKILKDLDEDIKGRDVLI 98 (178)
T ss_pred HHHHHHHHHHHhhC-CCceEEEEEcccchhhHHHHHHhcCCCceeEEEEEeccCCCcccCCceEEecccccCCCCCeEEE
Confidence 44445544443222 46778888777777777777766543 3567778887776666666654332 223445
Q ss_pred EeccccccccCcC
Q psy2046 96 LSTKAGGLGINLT 108 (138)
Q Consensus 96 ~~~~~~~~Gl~l~ 108 (138)
+. ++..+|.++.
T Consensus 99 Ve-DIiDsG~TLs 110 (178)
T COG0634 99 VE-DIIDSGLTLS 110 (178)
T ss_pred Ee-cccccChhHH
Confidence 44 7888887764
No 381
>PRK09200 preprotein translocase subunit SecA; Reviewed
Probab=45.52 E-value=1.9e+02 Score=24.56 Aligned_cols=59 Identities=12% Similarity=0.115 Sum_probs=39.3
Q ss_pred cCchHHH-HHHHHHHhhhCCCeEEEEeccHHHH----HHHHHHHhhcCCeEEEEeCCCC-hHHHHH
Q psy2046 21 ESGKLKK-LDEILPDLKKNGHRVLIFSQFIFVL----DILGHYMDIRGWRHLRLDGATQ-VSSRQE 80 (138)
Q Consensus 21 ~s~K~~~-l~~ll~~~~~~~~k~iif~~~~~~~----~~l~~~l~~~g~~~~~i~g~~~-~~~R~~ 80 (138)
-++|... ++-++.. .-.|..+.|.+++..-+ +.+...++..|+++..+.|+++ ..+|..
T Consensus 101 GeGKTL~a~lp~~l~-al~G~~v~VvTpt~~LA~qd~e~~~~l~~~lGl~v~~i~g~~~~~~~r~~ 165 (790)
T PRK09200 101 GEGKTLTATMPLYLN-ALEGKGVHLITVNDYLAKRDAEEMGQVYEFLGLTVGLNFSDIDDASEKKA 165 (790)
T ss_pred CCcchHHHHHHHHHH-HHcCCCeEEEeCCHHHHHHHHHHHHHHHhhcCCeEEEEeCCCCcHHHHHH
Confidence 3456443 3333322 23588999999988554 4455556667999999999998 777653
No 382
>PF01591 6PF2K: 6-phosphofructo-2-kinase; InterPro: IPR013079 6-Phosphofructo-2-kinase (2.7.1.105 from EC, 3.1.3.46 from EC) is a bifunctional enzyme that catalyses both the synthesis and the degradation of fructose-2, 6-bisphosphate. The fructose-2,6-bisphosphatase reaction involves a phosphohistidine intermediate. The catalytic pathway is: ATP + D-fructose 6-phosphate = ADP + D-fructose 2,6-bisphosphate D-fructose 2,6-bisphosphate + H2O = 6-fructose 6-phosphate + Pi The enzyme is important in the regulation of hepatic carbohydrate metabolism and is found in greatest quantities in the liver, kidney and heart. In mammals, several genes often encode different isoforms, each of which differs in its tissue distribution and enzymatic activity []. The family described here bears a resemblance to the ATP-driven phospho-fructokinases, however, they share little sequence similarity, although a few residues seem key to their interaction with fructose 6-phosphate []. This domain forms the N-terminal region of this enzyme, while IPR013078 from INTERPRO forms the C-terminal domain.; GO: 0003873 6-phosphofructo-2-kinase activity, 0005524 ATP binding, 0006000 fructose metabolic process; PDB: 2DWO_A 3QPW_A 3QPV_A 3QPU_A 2I1V_B 2DWP_A 2AXN_A 1K6M_B 3BIF_A 2BIF_A ....
Probab=45.08 E-value=78 Score=22.16 Aligned_cols=45 Identities=13% Similarity=0.304 Sum_probs=28.3
Q ss_pred HHHHHHHHhhcCCeEEEEeCC-CChHHHHHHHHHHhcCCCceEEEEe
Q psy2046 52 LDILGHYMDIRGWRHLRLDGA-TQVSSRQELIDEYNRDQDLFAFLLS 97 (138)
Q Consensus 52 ~~~l~~~l~~~g~~~~~i~g~-~~~~~R~~~~~~F~~~~~~~vll~~ 97 (138)
++.+.++|...+..++.+++. .+.+.|..+++.|+.-. .+++++-
T Consensus 84 l~dl~~~l~~~~G~VAI~DATN~T~~RR~~l~~~~~~~~-~~vlFIE 129 (222)
T PF01591_consen 84 LEDLIEWLQEEGGQVAIFDATNSTRERRKMLVERFKEHG-IKVLFIE 129 (222)
T ss_dssp HHHHHHHHHTS--SEEEEES---SHHHHHHHHHHHHHTT--EEEEEE
T ss_pred HHHHHHHHhcCCCeEEEEeCCCCCHHHHHHHHHHHHHcC-CcEEEEE
Confidence 455666777667788888885 46677777888887553 6667664
No 383
>PF02684 LpxB: Lipid-A-disaccharide synthetase; InterPro: IPR003835 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. These enzymes belong to the glycosyltransferase family 19 GT19 from CAZY. Lipid-A-disaccharide synthetase 2.4.1.182 from EC is involved with acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase 2.3.1.129 from EC and tetraacyldisaccharide 4'-kinase 2.7.1.130 from EC in the biosynthesis of the phosphorylated glycolipid, lipid A, in the outer membrane of Escherichia coli and other bacteria. These enzymes catalyse the first disaccharide step in the synthesis of lipid-A-disaccharide.; GO: 0008915 lipid-A-disaccharide synthase activity, 0009245 lipid A biosynthetic process
Probab=45.02 E-value=61 Score=24.64 Aligned_cols=51 Identities=18% Similarity=0.138 Sum_probs=37.6
Q ss_pred hhCCCeEEEEeccHHHHHHHHHHHhhcCCe--EEEEeCCC---ChHHHHHHHHHHh
Q psy2046 36 KKNGHRVLIFSQFIFVLDILGHYMDIRGWR--HLRLDGAT---QVSSRQELIDEYN 86 (138)
Q Consensus 36 ~~~~~k~iif~~~~~~~~~l~~~l~~~g~~--~~~i~g~~---~~~~R~~~~~~F~ 86 (138)
......++|+.+++.+--.++..+++.|++ ++.|-+.. -...|.+.++++-
T Consensus 79 ~~~~pd~vIlID~pgFNlrlak~lk~~~~~~~viyYI~PqvWAWr~~R~~~i~~~~ 134 (373)
T PF02684_consen 79 KEEKPDVVILIDYPGFNLRLAKKLKKRGIPIKVIYYISPQVWAWRPGRAKKIKKYV 134 (373)
T ss_pred HHcCCCEEEEeCCCCccHHHHHHHHHhCCCceEEEEECCceeeeCccHHHHHHHHH
Confidence 455678999999999999999999999988 55554432 1246666676663
No 384
>COG1990 pth2 Peptidyl-tRNA hydrolase [Translation, ribosomal structure and biogenesis]
Probab=44.91 E-value=40 Score=21.29 Aligned_cols=40 Identities=15% Similarity=0.132 Sum_probs=31.3
Q ss_pred HHHHHhhhCC-CeEEEEeccHHHHHHHHHHHhhcCCeEEEE
Q psy2046 30 EILPDLKKNG-HRVLIFSQFIFVLDILGHYMDIRGWRHLRL 69 (138)
Q Consensus 30 ~ll~~~~~~~-~k~iif~~~~~~~~~l~~~l~~~g~~~~~i 69 (138)
+++.++.++| .|+++=+++..++..+.+..+..|.+...+
T Consensus 46 ~~~~eWl~~Gq~Kivlkv~~~~eL~~~~~~A~~~gl~~~~i 86 (122)
T COG1990 46 EWLDEWLREGQKKIVLKVGSLDELLELHQKAESLGLPTALI 86 (122)
T ss_pred HHHHHHHHcCCceEEEEcCCHHHHHHHHHHHHHcCChHHHH
Confidence 4677776666 589999999999999999998888775443
No 385
>PRK04322 peptidyl-tRNA hydrolase; Provisional
Probab=44.79 E-value=75 Score=19.70 Aligned_cols=40 Identities=15% Similarity=0.052 Sum_probs=28.0
Q ss_pred HHHHhhhCC-CeEEEEeccHHHHHHHHHHHhhcCCeEEEEe
Q psy2046 31 ILPDLKKNG-HRVLIFSQFIFVLDILGHYMDIRGWRHLRLD 70 (138)
Q Consensus 31 ll~~~~~~~-~k~iif~~~~~~~~~l~~~l~~~g~~~~~i~ 70 (138)
.++.+...| .|+++-++..+.+..|...++..|+++..+.
T Consensus 38 ~~~~W~~~G~~Kvvlkv~~~~el~~l~~~a~~~~l~~~~v~ 78 (113)
T PRK04322 38 WLEEWLNEGQKKVVLKVNSEEELLELKEKAERLGLPTALIR 78 (113)
T ss_pred HHHHHHHCCCcEEEEeCCCHHHHHHHHHHHHHcCCCEEEEE
Confidence 344444455 4677777778888888888888888866553
No 386
>cd00291 SirA_YedF_YeeD SirA, YedF, and YeeD. Two-layered alpha/beta sandwich domain. SirA (also known as UvrY, and YhhP) belongs to a family of bacterial two-component response regulators that controls secondary metabolism and virulence. The other member of this two-component system is a sensor kinase called BarA which phosphorylates SirA. A variety of microorganisms have similar proteins, all of which contain a common CPxP sequence motif in the N-terminal region. YhhP is suggested to be important for normal cell division and growth in rich nutrient medium. Moreover, despite a low primary sequence similarity, the YccP structure closely resembles the non-homologous C-terminal RNA-binding domain of E. coli translation initiation factor IF3. The signature CPxP motif serves to stabilize the N-terminal helix as part of the N-capping box and might be important in mRNA-binding.
Probab=44.78 E-value=51 Score=17.78 Aligned_cols=35 Identities=11% Similarity=0.137 Sum_probs=29.0
Q ss_pred hCCCeEEEEeccHHHHHHHHHHHhhcCCeEEEEeC
Q psy2046 37 KNGHRVLIFSQFIFVLDILGHYMDIRGWRHLRLDG 71 (138)
Q Consensus 37 ~~~~k~iif~~~~~~~~~l~~~l~~~g~~~~~i~g 71 (138)
..|+.+.|.++.......+..+++..|+.+.....
T Consensus 24 ~~g~~l~v~~d~~~~~~~i~~~~~~~g~~~~~~~~ 58 (69)
T cd00291 24 KSGEVLEVLLDDPGAVEDIPAWAKETGHEVLEVEE 58 (69)
T ss_pred CCCCEEEEEecCCcHHHHHHHHHHHcCCEEEEEEE
Confidence 45788888898888899999999999998766543
No 387
>TIGR01101 V_ATP_synt_F vacuolar ATP synthase F subunit. This model describes the vacuolar ATP synthase F subunit (14 kDa subunit) in eukaryotes. In some archaeal species this protein subunit is referred as G subunit
Probab=44.73 E-value=66 Score=20.08 Aligned_cols=37 Identities=19% Similarity=0.338 Sum_probs=26.2
Q ss_pred EEEEeCCCChHHHHHHHHHHhcCCCceEEEEeccccc
Q psy2046 66 HLRLDGATQVSSRQELIDEYNRDQDLFAFLLSTKAGG 102 (138)
Q Consensus 66 ~~~i~g~~~~~~R~~~~~~F~~~~~~~vll~~~~~~~ 102 (138)
|..+++.++.++-.+.+++|-..+..-+++++-..+.
T Consensus 36 f~~v~~~t~~eei~~~~~~~l~~~digIIlIte~~a~ 72 (115)
T TIGR01101 36 FLVVDKNTTVSEIEDCFNRFLKRDDIAIILINQHIAE 72 (115)
T ss_pred eeeecCCCCHHHHHHHHHHHhhcCCeEEEEEcHHHHH
Confidence 4567777887777888888766667777777655544
No 388
>COG0075 Serine-pyruvate aminotransferase/archaeal aspartate aminotransferase [Amino acid transport and metabolism]
Probab=44.53 E-value=1.4e+02 Score=22.85 Aligned_cols=61 Identities=13% Similarity=0.150 Sum_probs=38.3
Q ss_pred CchHHHHHHHHHHhhhCCCeEEEEeccHHHHHHHHHHHhhcCCeEEEEeCC----CChHHHHHHHH
Q psy2046 22 SGKLKKLDEILPDLKKNGHRVLIFSQFIFVLDILGHYMDIRGWRHLRLDGA----TQVSSRQELID 83 (138)
Q Consensus 22 s~K~~~l~~ll~~~~~~~~k~iif~~~~~~~~~l~~~l~~~g~~~~~i~g~----~~~~~R~~~~~ 83 (138)
++=...+...+..+.+.|+|+|+..+- .+-+.+.+.++..|.++..+... .++++-++.++
T Consensus 63 gsGt~amEAav~sl~~pgdkVLv~~nG-~FG~R~~~ia~~~g~~v~~~~~~wg~~v~p~~v~~~L~ 127 (383)
T COG0075 63 GSGTLAMEAAVASLVEPGDKVLVVVNG-KFGERFAEIAERYGAEVVVLEVEWGEAVDPEEVEEALD 127 (383)
T ss_pred CCcHHHHHHHHHhccCCCCeEEEEeCC-hHHHHHHHHHHHhCCceEEEeCCCCCCCCHHHHHHHHh
Confidence 334445555666667778899888874 55677777777777776666554 34444444444
No 389
>PRK07445 O-succinylbenzoic acid--CoA ligase; Reviewed
Probab=44.22 E-value=1.4e+02 Score=22.80 Aligned_cols=63 Identities=10% Similarity=-0.042 Sum_probs=41.6
Q ss_pred chHHHHHHHHHHh-h-hCCCeEEEEeccHHHHHHHHHHHhhcCCeEEEEeCCCChHHHHHHHHHH
Q psy2046 23 GKLKKLDEILPDL-K-KNGHRVLIFSQFIFVLDILGHYMDIRGWRHLRLDGATQVSSRQELIDEY 85 (138)
Q Consensus 23 ~K~~~l~~ll~~~-~-~~~~k~iif~~~~~~~~~l~~~l~~~g~~~~~i~g~~~~~~R~~~~~~F 85 (138)
.+...+...|... . ..++++++.....-..-.+.-.+-+.|..++.++...+..+...+++..
T Consensus 27 ~~~~~~a~~L~~~g~~~~~~~V~i~~~n~~e~~~~~~A~~~~G~~~vpl~~~~~~~~~~~~~~~~ 91 (452)
T PRK07445 27 QLAQQLYLQLQQLATPRTPPKILLAESDPLQFLAAFLAAVAAGCPVFLANPHWGQQEWQQVLNLV 91 (452)
T ss_pred HHHHHHHHHHHHhcCCCCCCeEEEecCCCHHHHHHHHHHHHhCcEEEeeccCCCHHHHHHHHHhc
Confidence 4555666666554 2 3466888887654333333333345788999999999988888888875
No 390
>PRK13103 secA preprotein translocase subunit SecA; Reviewed
Probab=44.15 E-value=1.8e+02 Score=25.12 Aligned_cols=48 Identities=6% Similarity=-0.048 Sum_probs=37.7
Q ss_pred hhCCCeEEEEeccH----HHHHHHHHHHhhcCCeEEEEeCCCChHHHHHHHH
Q psy2046 36 KKNGHRVLIFSQFI----FVLDILGHYMDIRGWRHLRLDGATQVSSRQELID 83 (138)
Q Consensus 36 ~~~~~k~iif~~~~----~~~~~l~~~l~~~g~~~~~i~g~~~~~~R~~~~~ 83 (138)
...|..+.|.+.+. ...+++...++..|+++..+.+++++.+|..+..
T Consensus 120 al~G~~VhvvT~ndyLA~RD~e~m~~l~~~lGl~v~~i~~~~~~~err~~Y~ 171 (913)
T PRK13103 120 ALSGKGVHVVTVNDYLARRDANWMRPLYEFLGLSVGIVTPFQPPEEKRAAYA 171 (913)
T ss_pred HHcCCCEEEEeCCHHHHHHHHHHHHHHhcccCCEEEEECCCCCHHHHHHHhc
Confidence 34677888888876 3456777777778999999999999998886554
No 391
>PLN00206 DEAD-box ATP-dependent RNA helicase; Provisional
Probab=43.79 E-value=1.6e+02 Score=23.27 Aligned_cols=74 Identities=4% Similarity=0.035 Sum_probs=44.0
Q ss_pred CCCeEEEEeccHHHHHHHHHHHhhc----CCeEEEEeCCCChHHHHHHHHHHhcCCCceEEEEecccc-----ccccCcC
Q psy2046 38 NGHRVLIFSQFIFVLDILGHYMDIR----GWRHLRLDGATQVSSRQELIDEYNRDQDLFAFLLSTKAG-----GLGINLT 108 (138)
Q Consensus 38 ~~~k~iif~~~~~~~~~l~~~l~~~----g~~~~~i~g~~~~~~R~~~~~~F~~~~~~~vll~~~~~~-----~~Gl~l~ 108 (138)
.+.++||.+++++-+..+.+.++.. ++....+.|+.+..+.. ...+.+ ..++++++... ..++++.
T Consensus 195 ~~~~aLIL~PTreLa~Qi~~~~~~l~~~~~~~~~~~~gG~~~~~q~---~~l~~~--~~IiV~TPgrL~~~l~~~~~~l~ 269 (518)
T PLN00206 195 RNPLAMVLTPTRELCVQVEDQAKVLGKGLPFKTALVVGGDAMPQQL---YRIQQG--VELIVGTPGRLIDLLSKHDIELD 269 (518)
T ss_pred CCceEEEEeCCHHHHHHHHHHHHHHhCCCCceEEEEECCcchHHHH---HHhcCC--CCEEEECHHHHHHHHHcCCccch
Confidence 3458999999988776666555443 45667777776644332 233333 34466554332 2356677
Q ss_pred ccCEEEEe
Q psy2046 109 AADTVIIH 116 (138)
Q Consensus 109 ~~~~vi~~ 116 (138)
+...+|+=
T Consensus 270 ~v~~lViD 277 (518)
T PLN00206 270 NVSVLVLD 277 (518)
T ss_pred heeEEEee
Confidence 77777663
No 392
>cd08186 Fe-ADH8 Iron-containing alcohol dehydrogenase. Type III Iron-containing alcohol dehydrogenases (ADH). Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. The ADH of hyperthermophilic archaeon Thermococcus hydrothermalis oxidizes a series of primary aliphatic and aromatic alcohols preferentially from C2 to C8 but is also active towards methanol and glycerol and stereospecific for monoterpenes. It was suggested that the type III ADHs in microorganisms are involved in acetaldehyde detoxication rather than in alcohol turnover.
Probab=43.70 E-value=1.4e+02 Score=22.55 Aligned_cols=66 Identities=26% Similarity=0.297 Sum_probs=42.1
Q ss_pred chHHHHHHHHHHhhhCC-CeEEEEeccHH-----HHHHHHHHHhhcCCeEEEEeCCC---ChHHHHHHHHHHhcC
Q psy2046 23 GKLKKLDEILPDLKKNG-HRVLIFSQFIF-----VLDILGHYMDIRGWRHLRLDGAT---QVSSRQELIDEYNRD 88 (138)
Q Consensus 23 ~K~~~l~~ll~~~~~~~-~k~iif~~~~~-----~~~~l~~~l~~~g~~~~~i~g~~---~~~~R~~~~~~F~~~ 88 (138)
+-+..+.+.+..+...+ +|++|.+.... ..+.+...|++.|+.+..+.+-. +.+.-.+..+.++..
T Consensus 9 g~~~~l~~~l~~~~~~g~kr~livtd~~~~~~~g~~~~v~~~L~~~gi~~~~f~~v~~~p~~~~v~~~~~~~~~~ 83 (383)
T cd08186 9 GAIEKIGEILKDLKSKGISKVLLVTGKSAYKKSGAWDKVEPALDEHGIEYVLYNKVTPNPTVDQVDEAAKLGREF 83 (383)
T ss_pred CHHHHHHHHHHHhcccCCCEEEEEcCccHHhhcChHHHHHHHHHHcCCeEEEeCCCCCCCCHHHHHHHHHHHHHc
Confidence 34556666665543223 67888886432 15788889988888887776543 445666677777654
No 393
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=43.44 E-value=1.6e+02 Score=23.00 Aligned_cols=78 Identities=10% Similarity=0.106 Sum_probs=43.5
Q ss_pred cCchHHHHHHHHHHhhhCCCeEEEEeccH---HHHHHHHHHHhhcCCeEEEEeCCCCh-HHHHHHHHHHhcCCCceEEEE
Q psy2046 21 ESGKLKKLDEILPDLKKNGHRVLIFSQFI---FVLDILGHYMDIRGWRHLRLDGATQV-SSRQELIDEYNRDQDLFAFLL 96 (138)
Q Consensus 21 ~s~K~~~l~~ll~~~~~~~~k~iif~~~~---~~~~~l~~~l~~~g~~~~~i~g~~~~-~~R~~~~~~F~~~~~~~vll~ 96 (138)
-++|...+.++-..+...|.++.+.+--. ...+.+..+-+..++++.......++ .-..+.++.++... ..++|+
T Consensus 110 GvGKTTtaaKLA~~l~~~G~kV~lV~~D~~R~aA~eQLk~~a~~~~vp~~~~~~~~dp~~i~~~~l~~~~~~~-~DvViI 188 (429)
T TIGR01425 110 GSGKTTTCTKLAYYYQRKGFKPCLVCADTFRAGAFDQLKQNATKARIPFYGSYTESDPVKIASEGVEKFKKEN-FDIIIV 188 (429)
T ss_pred CCCHHHHHHHHHHHHHHCCCCEEEEcCcccchhHHHHHHHHhhccCCeEEeecCCCCHHHHHHHHHHHHHhCC-CCEEEE
Confidence 35787777777766666677776665422 34455555555567776554443332 33334566665432 344666
Q ss_pred ecc
Q psy2046 97 STK 99 (138)
Q Consensus 97 ~~~ 99 (138)
.|.
T Consensus 189 DTa 191 (429)
T TIGR01425 189 DTS 191 (429)
T ss_pred ECC
Confidence 543
No 394
>cd01542 PBP1_TreR_like Ligand-binding domain of DNA transcription repressor specific for trehalose (TreR) which is a member of the LacI-GalR family of bacterial transcription regulators. Ligand-binding domain of DNA transcription repressor specific for trehalose (TreR) which is a member of the LacI-GalR family of bacterial transcription regulators. The ligand-binding domain of TreR is structurally homologous to the periplasmic sugar-binding domain of ABC-type transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding wh
Probab=43.41 E-value=1e+02 Score=20.97 Aligned_cols=61 Identities=13% Similarity=0.088 Sum_probs=29.7
Q ss_pred hHHHHHHHHHH-hhhCCCeEEEEeccH--H-HHHHHHHHHhhcCCeEEEEeCCCChHHHHHHHHHHhcC
Q psy2046 24 KLKKLDEILPD-LKKNGHRVLIFSQFI--F-VLDILGHYMDIRGWRHLRLDGATQVSSRQELIDEYNRD 88 (138)
Q Consensus 24 K~~~l~~ll~~-~~~~~~k~iif~~~~--~-~~~~l~~~l~~~g~~~~~i~g~~~~~~R~~~~~~F~~~ 88 (138)
-...+.+-+.+ ..+.|-+++++.... . ..+.+.. |...++....+.+..... ..++.++..
T Consensus 13 ~~~~~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~i~~-l~~~~~dgii~~~~~~~~---~~~~~~~~~ 77 (259)
T cd01542 13 STSRTVKGILAALYENGYQMLLMNTNFSIEKEIEALEL-LARQKVDGIILLATTITD---EHREAIKKL 77 (259)
T ss_pred hHHHHHHHHHHHHHHCCCEEEEEeCCCCHHHHHHHHHH-HHhcCCCEEEEeCCCCCH---HHHHHHhcC
Confidence 33444444433 345577777765432 2 2233444 445677777776544322 344555443
No 395
>PRK12326 preprotein translocase subunit SecA; Reviewed
Probab=43.37 E-value=2e+02 Score=24.27 Aligned_cols=47 Identities=13% Similarity=0.104 Sum_probs=36.7
Q ss_pred hhCCCeEEEEeccH----HHHHHHHHHHhhcCCeEEEEeCCCChHHHHHHH
Q psy2046 36 KKNGHRVLIFSQFI----FVLDILGHYMDIRGWRHLRLDGATQVSSRQELI 82 (138)
Q Consensus 36 ~~~~~k~iif~~~~----~~~~~l~~~l~~~g~~~~~i~g~~~~~~R~~~~ 82 (138)
.-.|.++.|.+.+. ...++....++..|+++..+.++++.++|..+.
T Consensus 116 AL~G~~VhvvT~NdyLA~RDae~m~~ly~~LGLsvg~i~~~~~~~err~aY 166 (764)
T PRK12326 116 ALQGRRVHVITVNDYLARRDAEWMGPLYEALGLTVGWITEESTPEERRAAY 166 (764)
T ss_pred HHcCCCeEEEcCCHHHHHHHHHHHHHHHHhcCCEEEEECCCCCHHHHHHHH
Confidence 34678888888876 345567777777899999999999988887644
No 396
>PF02399 Herpes_ori_bp: Origin of replication binding protein; InterPro: IPR003450 This entry represents replication origin binding protein. It functions as a docking protein to recruit essential components of the viral replication machinery to viral DNA origins. In the presence of the major DNA-binding protein, it opens dsDNA which leads to a conformational change in the origin that facilitates DNA unwinding and subsequent replication [].; GO: 0003688 DNA replication origin binding, 0005524 ATP binding, 0006260 DNA replication
Probab=42.91 E-value=95 Score=26.33 Aligned_cols=46 Identities=22% Similarity=0.190 Sum_probs=39.0
Q ss_pred cccCchHHHHHHHHHHhh-hCCCeEEEEeccHHHHHHHHHHHhhcCC
Q psy2046 19 VVESGKLKKLDEILPDLK-KNGHRVLIFSQFIFVLDILGHYMDIRGW 64 (138)
Q Consensus 19 ~~~s~K~~~l~~ll~~~~-~~~~k~iif~~~~~~~~~l~~~l~~~g~ 64 (138)
.+-++|...+.+.+++.. .++.++++-+.....+..+...|+..++
T Consensus 57 pMGTGKTtaLi~wLk~~l~~~~~~VLvVShRrSL~~sL~~rf~~~~l 103 (824)
T PF02399_consen 57 PMGTGKTTALIRWLKDALKNPDKSVLVVSHRRSLTKSLAERFKKAGL 103 (824)
T ss_pred CCCCCcHHHHHHHHHHhccCCCCeEEEEEhHHHHHHHHHHHHhhcCC
Confidence 345799999999999864 5678999999988999999999988876
No 397
>TIGR01689 EcbF-BcbF capsule biosynthesis phosphatase. Due to the likelihood that the substrates of these enzymes are different depending on the nature of the particular polysaccharides associated with each species, this model has been classified as a subfamily despite the close homology.
Probab=42.90 E-value=86 Score=19.83 Aligned_cols=45 Identities=18% Similarity=0.090 Sum_probs=29.5
Q ss_pred HHHHHHHHHhhhCCCeEEEEeccHHH-------------HHHHHHHHhhcCCeEEEEe
Q psy2046 26 KKLDEILPDLKKNGHRVLIFSQFIFV-------------LDILGHYMDIRGWRHLRLD 70 (138)
Q Consensus 26 ~~l~~ll~~~~~~~~k~iif~~~~~~-------------~~~l~~~l~~~g~~~~~i~ 70 (138)
....+.++.+.+.|..+++.+..... +..+.++|.+.+++|-.+.
T Consensus 27 ~~~ie~L~~l~~~G~~IiiaTGR~~~~~~~n~~~i~~~~~~~t~~wL~k~~ipYd~l~ 84 (126)
T TIGR01689 27 LAVIEKLRHYKALGFEIVISSSRNMRTYEGNVGKINIHTLPIIILWLNQHNVPYDEIY 84 (126)
T ss_pred HHHHHHHHHHHHCCCEEEEECCCCchhhhccccccchhhHHHHHHHHHHcCCCCceEE
Confidence 34556666666777777777754322 2477889998888874433
No 398
>PF00532 Peripla_BP_1: Periplasmic binding proteins and sugar binding domain of LacI family; InterPro: IPR001761 This family includes the periplasmic binding proteins, and the LacI family transcriptional regulators. The periplasmic binding proteins are the primary receptors for chemotaxis and transport of many sugar based solutes. The LacI family of proteins consist of transcriptional regulators related to the lac repressor. In this case, generally the sugar binding domain binds a sugar which changes the DNA binding activity of the repressor domain (lacI) [, ].; PDB: 1BAP_A 7ABP_A 6ABP_A 1ABF_A 5ABP_A 2WRZ_B 9ABP_A 1APB_A 1ABE_A 8ABP_A ....
Probab=42.75 E-value=1.2e+02 Score=21.58 Aligned_cols=40 Identities=10% Similarity=-0.012 Sum_probs=20.0
Q ss_pred hhCCCeEEEEecc-HHHHHHHHHHHhhcCCeEEEEeCCCCh
Q psy2046 36 KKNGHRVLIFSQF-IFVLDILGHYMDIRGWRHLRLDGATQV 75 (138)
Q Consensus 36 ~~~~~k~iif~~~-~~~~~~l~~~l~~~g~~~~~i~g~~~~ 75 (138)
.+.|-.++++... ....+..-+.|...++.-..+.+....
T Consensus 28 ~~~Gy~l~l~~t~~~~~~e~~i~~l~~~~vDGiI~~s~~~~ 68 (279)
T PF00532_consen 28 REHGYQLLLCNTGDDEEKEEYIELLLQRRVDGIILASSEND 68 (279)
T ss_dssp HHTTCEEEEEEETTTHHHHHHHHHHHHTTSSEEEEESSSCT
T ss_pred HHcCCEEEEecCCCchHHHHHHHHHHhcCCCEEEEecccCC
Confidence 4556666554432 222223334455566766666655443
No 399
>TIGR01275 ACC_deam_rel pyridoxal phosphate-dependent enzymes, D-cysteine desulfhydrase family. This model represents a family of pyridoxal phosphate-dependent enzymes closely related to (and often designated as putative examples of) 1-aminocyclopropane-1-carboxylate deaminase. It appears that members of this family include both D-cysteine desulfhydrase (EC 4.4.1.15) and 1-aminocyclopropane-1-carboxylate deaminase (EC 3.5.99.7).
Probab=42.55 E-value=1.3e+02 Score=21.83 Aligned_cols=65 Identities=14% Similarity=0.054 Sum_probs=45.7
Q ss_pred cCchHHHHHHHHHHhhhCCCeEEEEe--ccHHHHHHHHHHHhhcCCeEEEEeCCC-ChHHHHHHHHHH
Q psy2046 21 ESGKLKKLDEILPDLKKNGHRVLIFS--QFIFVLDILGHYMDIRGWRHLRLDGAT-QVSSRQELIDEY 85 (138)
Q Consensus 21 ~s~K~~~l~~ll~~~~~~~~k~iif~--~~~~~~~~l~~~l~~~g~~~~~i~g~~-~~~~R~~~~~~F 85 (138)
-|-|.+.+..++....+.+.+.||=+ .+-+....++-+-...|+++..+-... +...+...++.|
T Consensus 37 gs~K~R~~~~~l~~a~~~g~~~vv~~g~ssGN~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~~~~~~ 104 (311)
T TIGR01275 37 GGNKIRKLEYLLADALSKGADTVITVGAIQSNHARATALAAKKLGLDAVLVLREKEELNGNLLLDKLM 104 (311)
T ss_pred CchhHHHHHHHHHHHHHcCCCEEEEcCCchhHHHHHHHHHHHHhCCceEEEecCCccCCCCHHHHHHc
Confidence 46899999998987777776655543 345777888888888999977666653 234455556666
No 400
>PRK10867 signal recognition particle protein; Provisional
Probab=42.35 E-value=1.6e+02 Score=22.90 Aligned_cols=76 Identities=14% Similarity=0.170 Sum_probs=41.3
Q ss_pred CchHHHHHHHHHHhhhC-CCeEEEEeccH---HHHHHHHHHHhhcCCeEEEEeCCCCh-HHHHHHHHHHhcCCCceEEEE
Q psy2046 22 SGKLKKLDEILPDLKKN-GHRVLIFSQFI---FVLDILGHYMDIRGWRHLRLDGATQV-SSRQELIDEYNRDQDLFAFLL 96 (138)
Q Consensus 22 s~K~~~l~~ll~~~~~~-~~k~iif~~~~---~~~~~l~~~l~~~g~~~~~i~g~~~~-~~R~~~~~~F~~~~~~~vll~ 96 (138)
++|.....++...+... +.++++.+--. ...+.+..+-+..|+++.......++ .-..+.++.++.... .++|+
T Consensus 111 sGKTTtaakLA~~l~~~~G~kV~lV~~D~~R~aa~eQL~~~a~~~gv~v~~~~~~~dp~~i~~~a~~~a~~~~~-DvVII 189 (433)
T PRK10867 111 AGKTTTAGKLAKYLKKKKKKKVLLVAADVYRPAAIEQLKTLGEQIGVPVFPSGDGQDPVDIAKAALEEAKENGY-DVVIV 189 (433)
T ss_pred CcHHHHHHHHHHHHHHhcCCcEEEEEccccchHHHHHHHHHHhhcCCeEEecCCCCCHHHHHHHHHHHHHhcCC-CEEEE
Confidence 57888888877776666 76766554322 23445666666667776544322233 333345555544322 34555
Q ss_pred ec
Q psy2046 97 ST 98 (138)
Q Consensus 97 ~~ 98 (138)
.|
T Consensus 190 DT 191 (433)
T PRK10867 190 DT 191 (433)
T ss_pred eC
Confidence 43
No 401
>cd08191 HHD 6-hydroxyhexanoate dehydrogenase (HHD) catalyzes the oxidation of 6-hydroxyhexanoate to 6-oxohexanoate. 6-hydroxyhexanoate dehydrogenase (HHD). The 6-hydroxyhexanoate dehydrogenase catalyzes the oxidation of 6-hydroxyhexanoate to 6-oxohexanoate. Some bacteria can grow on cyclic ketones, cyclohexylamine, and alcohols as sole carbon source. Cyclohexylamine is an insecticide and antiseptic in various industries and is considered a possible environmental pollutant. The degradation of these chemical compounds are through the cyclohexanol and cyclohexanone biological oxidation pathway. The intermediates of this pathway include cyclohexanol, cyclohexanone, e-caprolactone, 6-hydroxyhexanoate, 6-oxohexanoate and adipate. The 6-hydroxyhexanoate dehydrogenase catalyzes the oxidation of 6-hydroxyhexanoate to 6-oxohexanoate.
Probab=42.25 E-value=1.5e+02 Score=22.43 Aligned_cols=61 Identities=21% Similarity=0.200 Sum_probs=34.0
Q ss_pred hHHHHHHHHHHhhhCCCeEEEEeccH----HHHHHHHHHHhhcCCeEEEEeCCC---ChHHHHHHHHHHhc
Q psy2046 24 KLKKLDEILPDLKKNGHRVLIFSQFI----FVLDILGHYMDIRGWRHLRLDGAT---QVSSRQELIDEYNR 87 (138)
Q Consensus 24 K~~~l~~ll~~~~~~~~k~iif~~~~----~~~~~l~~~l~~~g~~~~~i~g~~---~~~~R~~~~~~F~~ 87 (138)
-+..+.+.++.+ ++|++|.+... ...+.+.+.|++.|+.+..+.|-. +..+-.+..+.++.
T Consensus 10 ~l~~l~~~~~~~---g~~~livt~~~~~~~~~~~~v~~~L~~~~~~~~~f~~v~~~~~~~~v~~~~~~~~~ 77 (386)
T cd08191 10 QRRQLPRLAARL---GSRALIVTDERMAGTPVFAELVQALAAAGVEVEVFDGVLPDLPRSELCDAASAAAR 77 (386)
T ss_pred HHHHHHHHHHHc---CCeEEEEECcchhhcchHHHHHHHHHHcCCeEEEECCCCCCcCHHHHHHHHHHHHh
Confidence 344454555432 35777776532 245667777877788877766554 23333444555544
No 402
>PRK06721 threonine synthase; Reviewed
Probab=42.23 E-value=1.4e+02 Score=22.24 Aligned_cols=66 Identities=12% Similarity=0.035 Sum_probs=49.0
Q ss_pred ccCchHHHHHHHHHHhhhCCCeEEEEeccHHHHHHHHHHHhhcCCeEEEEeCCC-ChHHHHHHHHHH
Q psy2046 20 VESGKLKKLDEILPDLKKNGHRVLIFSQFIFVLDILGHYMDIRGWRHLRLDGAT-QVSSRQELIDEY 85 (138)
Q Consensus 20 ~~s~K~~~l~~ll~~~~~~~~k~iif~~~~~~~~~l~~~l~~~g~~~~~i~g~~-~~~~R~~~~~~F 85 (138)
.-|-|......++....+++.+.||=+..-+..-.++.+-...|+++..+-... ....+...++.|
T Consensus 55 tGS~KdR~a~~~i~~a~~~g~~~vV~aSsGN~G~alA~~aa~~G~~~~vvvp~~~~~~~k~~~~~~~ 121 (352)
T PRK06721 55 TGSFKDRGMVMAVAKAKEEGSEAIICASTGNTSASAAAYAARLGMKCIIVIPEGKIAHGKLAQAVAY 121 (352)
T ss_pred ccchHHHHHHHHHHHHHHCCCCEEEEECCcHHHHHHHHHHHHCCCcEEEEECCCCCCHHHHHHHHHc
Confidence 357899988888888777776666666666677778887788899988877654 355677777877
No 403
>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional
Probab=41.98 E-value=99 Score=20.74 Aligned_cols=7 Identities=0% Similarity=0.178 Sum_probs=2.8
Q ss_pred HHHHHHH
Q psy2046 79 QELIDEY 85 (138)
Q Consensus 79 ~~~~~~F 85 (138)
.+.+..+
T Consensus 152 ~~~~~~l 158 (198)
T PRK00377 152 NNALSAL 158 (198)
T ss_pred HHHHHHH
Confidence 3344444
No 404
>PF12689 Acid_PPase: Acid Phosphatase; InterPro: IPR010036 This entry represents two closely related clades of sequences from eukaryotes and archaea. The mouse enzyme has been characterised as a phosphatase and has been positively identified as a member of the haloacid dehalogenase (HAD) superfamily by site-directed mutagenesis of the active site residues [, ].; GO: 0016791 phosphatase activity; PDB: 1U7P_A 1U7O_A 2WM8_A.
Probab=41.81 E-value=1.1e+02 Score=20.53 Aligned_cols=65 Identities=8% Similarity=0.107 Sum_probs=41.3
Q ss_pred cccCchHHHHHHHHHHhhhCCCeEEEEeccHHHHHHHHHHHhhcCCeEEEEeCCCChHHHHHHHHHHhc
Q psy2046 19 VVESGKLKKLDEILPDLKKNGHRVLIFSQFIFVLDILGHYMDIRGWRHLRLDGATQVSSRQELIDEYNR 87 (138)
Q Consensus 19 ~~~s~K~~~l~~ll~~~~~~~~k~iif~~~~~~~~~l~~~l~~~g~~~~~i~g~~~~~~R~~~~~~F~~ 87 (138)
+..++|...+.++.+...-..+.+|.|=+.....+.+. +.|+.++....+++.+.=++-+++|+.
T Consensus 104 I~~gsK~~Hf~~i~~~tgI~y~eMlFFDDe~~N~~~v~----~lGV~~v~v~~Glt~~~~~~gL~~~~~ 168 (169)
T PF12689_consen 104 IYPGSKTTHFRRIHRKTGIPYEEMLFFDDESRNIEVVS----KLGVTCVLVPDGLTWDEFERGLEKFRK 168 (169)
T ss_dssp ESSS-HHHHHHHHHHHH---GGGEEEEES-HHHHHHHH----TTT-EEEE-SSS--HHHHHHHHHHHHH
T ss_pred eecCchHHHHHHHHHhcCCChhHEEEecCchhcceeeE----ecCcEEEEeCCCCCHHHHHHHHHHHhh
Confidence 34568999988888755444456777777666555543 378999999999998888888888863
No 405
>COG3453 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=41.74 E-value=85 Score=19.96 Aligned_cols=58 Identities=10% Similarity=0.189 Sum_probs=39.7
Q ss_pred HHHHHHHHhhcCCeE--EEEeC-CCChHHHHHHHHHHhcCCCceEEEEeccccccccCcCccC
Q psy2046 52 LDILGHYMDIRGWRH--LRLDG-ATQVSSRQELIDEYNRDQDLFAFLLSTKAGGLGINLTAAD 111 (138)
Q Consensus 52 ~~~l~~~l~~~g~~~--~~i~g-~~~~~~R~~~~~~F~~~~~~~vll~~~~~~~~Gl~l~~~~ 111 (138)
...+..+.+..|+.| ..+.| ..+..+-+...+++.+.+.+ +|+..+++.+.++|....
T Consensus 47 ~~~i~~aa~~aGl~y~~iPV~~~~iT~~dV~~f~~Al~eaegP--VlayCrsGtRs~~ly~~~ 107 (130)
T COG3453 47 FAAIAAAAEAAGLTYTHIPVTGGGITEADVEAFQRALDEAEGP--VLAYCRSGTRSLNLYGLG 107 (130)
T ss_pred hHHHHHHHHhcCCceEEeecCCCCCCHHHHHHHHHHHHHhCCC--EEeeecCCchHHHHHHHH
Confidence 567888888888774 44555 44555555555555555555 888889999998876443
No 406
>cd07025 Peptidase_S66 LD-Carboxypeptidase, a serine protease, includes microcin C7 self immunity protein. LD-carboxypeptidase (Muramoyltetrapeptide carboxypeptidase; EC 3.4.17.13; Merops family S66; initially described as Carboxypeptidase II) family also includes the microcin c7 self-immunity protein (MccF) as well as uncharacterized proteins including hypothetical proteins. LD-carboxypeptidase hydrolyzes the amide bond that links the dibasic amino acids to C-terminal D-amino acids. The physiological substrates of LD-carboxypeptidase are tetrapeptide fragments (such as UDP-MurNAc-tetrapeptides) that are produced when bacterial cell walls are degraded; they contain an L-configured residue (L-lysine or meso-diaminopimelic acid residue) as the penultimate residue and D-alanine as the ultimate residue. A possible role of LD-carboxypeptidase is in peptidoglycan recycling whereby the resulting tripeptide (precursor for murein synthesis) can be reconverted into peptidoglycan by attachment o
Probab=41.36 E-value=1.3e+02 Score=21.64 Aligned_cols=6 Identities=17% Similarity=0.251 Sum_probs=2.4
Q ss_pred EEEecc
Q psy2046 94 FLLSTK 99 (138)
Q Consensus 94 ll~~~~ 99 (138)
++.-++
T Consensus 94 ~iGySD 99 (282)
T cd07025 94 FVGYSD 99 (282)
T ss_pred EEEecH
Confidence 444333
No 407
>PRK02362 ski2-like helicase; Provisional
Probab=41.28 E-value=1.3e+02 Score=24.93 Aligned_cols=56 Identities=16% Similarity=0.077 Sum_probs=39.7
Q ss_pred cccCchHHHHH-HHHHHhhhCCCeEEEEeccHHHHHHHHHHHhhc---CCeEEEEeCCCCh
Q psy2046 19 VVESGKLKKLD-EILPDLKKNGHRVLIFSQFIFVLDILGHYMDIR---GWRHLRLDGATQV 75 (138)
Q Consensus 19 ~~~s~K~~~l~-~ll~~~~~~~~k~iif~~~~~~~~~l~~~l~~~---g~~~~~i~g~~~~ 75 (138)
...++|..... -++..+ .++.++|+.++++.-+......+++. |+.+..++|+.+.
T Consensus 47 PTGSGKTlia~lail~~l-~~~~kal~i~P~raLa~q~~~~~~~~~~~g~~v~~~tGd~~~ 106 (737)
T PRK02362 47 PTASGKTLIAELAMLKAI-ARGGKALYIVPLRALASEKFEEFERFEELGVRVGISTGDYDS 106 (737)
T ss_pred CCcchHHHHHHHHHHHHH-hcCCcEEEEeChHHHHHHHHHHHHHhhcCCCEEEEEeCCcCc
Confidence 34567766543 344443 35679999999998877777776654 7888999998754
No 408
>PRK14010 potassium-transporting ATPase subunit B; Provisional
Probab=41.25 E-value=2.1e+02 Score=23.80 Aligned_cols=38 Identities=13% Similarity=0.041 Sum_probs=26.7
Q ss_pred HHHHHHHHhhcCCeEEEEeCC--------------------CChHHHHHHHHHHhcCC
Q psy2046 52 LDILGHYMDIRGWRHLRLDGA--------------------TQVSSRQELIDEYNRDQ 89 (138)
Q Consensus 52 ~~~l~~~l~~~g~~~~~i~g~--------------------~~~~~R~~~~~~F~~~~ 89 (138)
....-+.|++.|+++.+++|+ .+++++.+++++++...
T Consensus 446 a~e~I~~Lr~~GI~vvMiTGDn~~TA~aIA~elGI~~v~A~~~PedK~~iV~~lQ~~G 503 (673)
T PRK14010 446 LVERFRELREMGIETVMCTGDNELTAATIAKEAGVDRFVAECKPEDKINVIREEQAKG 503 (673)
T ss_pred HHHHHHHHHHCCCeEEEECCCCHHHHHHHHHHcCCceEEcCCCHHHHHHHHHHHHhCC
Confidence 344444556667776665555 78899999999998653
No 409
>PRK12906 secA preprotein translocase subunit SecA; Reviewed
Probab=41.06 E-value=1.9e+02 Score=24.65 Aligned_cols=47 Identities=9% Similarity=-0.062 Sum_probs=36.6
Q ss_pred hhCCCeEEEEeccH----HHHHHHHHHHhhcCCeEEEEeCCCChHHHHHHH
Q psy2046 36 KKNGHRVLIFSQFI----FVLDILGHYMDIRGWRHLRLDGATQVSSRQELI 82 (138)
Q Consensus 36 ~~~~~k~iif~~~~----~~~~~l~~~l~~~g~~~~~i~g~~~~~~R~~~~ 82 (138)
...|..+-|-+.+. ...+.+...++..|+++..+.|++++.+|..+.
T Consensus 118 al~G~~v~vvT~neyLA~Rd~e~~~~~~~~LGl~vg~i~~~~~~~~r~~~y 168 (796)
T PRK12906 118 ALTGKGVHVVTVNEYLSSRDATEMGELYRWLGLTVGLNLNSMSPDEKRAAY 168 (796)
T ss_pred HHcCCCeEEEeccHHHHHhhHHHHHHHHHhcCCeEEEeCCCCCHHHHHHHh
Confidence 34677888888766 346678888888899999999999988886543
No 410
>PRK01355 azoreductase; Reviewed
Probab=40.58 E-value=25 Score=23.86 Aligned_cols=30 Identities=27% Similarity=0.187 Sum_probs=21.3
Q ss_pred cCccCEEEEeCCCCC---ccchhHHHHHHhhcC
Q psy2046 107 LTAADTVIIHDVDFN---PYNDKQAEDRCHRVG 136 (138)
Q Consensus 107 l~~~~~vi~~~~~~~---~~~~~Q~~gR~~R~G 136 (138)
+..|+.+|+..|-|| |......+.|+.+.|
T Consensus 75 l~~AD~iV~~sP~y~~~ipa~LK~~iDrv~~~~ 107 (199)
T PRK01355 75 LKSVDKVVISCPMTNFNVPATLKNYLDHIAVAN 107 (199)
T ss_pred HHhCCEEEEEcCccccCChHHHHHHHHHHHhcC
Confidence 457888888888776 445566778877665
No 411
>cd06315 PBP1_ABC_sugar_binding_like_6 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=40.52 E-value=1.3e+02 Score=21.12 Aligned_cols=62 Identities=11% Similarity=-0.064 Sum_probs=27.9
Q ss_pred HHhhhCCCeEEEEeccH--H-HHHHHHHHHhhcCCeEEEEeCCCChHHHHHHHHHHhcCCCceEEEEe
Q psy2046 33 PDLKKNGHRVLIFSQFI--F-VLDILGHYMDIRGWRHLRLDGATQVSSRQELIDEYNRDQDLFAFLLS 97 (138)
Q Consensus 33 ~~~~~~~~k~iif~~~~--~-~~~~l~~~l~~~g~~~~~i~g~~~~~~R~~~~~~F~~~~~~~vll~~ 97 (138)
....+.|-.+++..... + ....+.. +...++....+.+... ..-...++..+....+ ++++.
T Consensus 24 ~~a~~~gy~~~~~~~~~~~~~~~~~i~~-l~~~~vdgiil~~~~~-~~~~~~~~~~~~~~iP-vV~~d 88 (280)
T cd06315 24 EAAKAIGWNLRILDGRGSEAGQAAALNQ-AIALKPDGIVLGGVDA-AELQAELELAQKAGIP-VVGWH 88 (280)
T ss_pred HHHHHcCcEEEEECCCCCHHHHHHHHHH-HHHcCCCEEEEcCCCH-HHHHHHHHHHHHCCCC-EEEec
Confidence 33445566666654322 1 2233333 5556677666665332 2122334444443333 34443
No 412
>cd02066 GRX_family Glutaredoxin (GRX) family; composed of GRX, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known including human GRX1 and GRX2, as well as E. coli GRX1 and GRX3, which
Probab=40.41 E-value=57 Score=17.05 Aligned_cols=39 Identities=18% Similarity=0.139 Sum_probs=26.5
Q ss_pred EEEEe-ccHHHHHHHHHHHhhcCCeEEEEeCCCChHHHHH
Q psy2046 42 VLIFS-QFIFVLDILGHYMDIRGWRHLRLDGATQVSSRQE 80 (138)
Q Consensus 42 ~iif~-~~~~~~~~l~~~l~~~g~~~~~i~g~~~~~~R~~ 80 (138)
+++|+ ........+..+|.+.++++..++=......+..
T Consensus 2 v~ly~~~~Cp~C~~~~~~L~~~~i~~~~~di~~~~~~~~~ 41 (72)
T cd02066 2 VVVFSKSTCPYCKRAKRLLESLGIEFEEIDILEDGELREE 41 (72)
T ss_pred EEEEECCCCHHHHHHHHHHHHcCCcEEEEECCCCHHHHHH
Confidence 44555 4446678888899999999887776655543433
No 413
>cd06280 PBP1_LacI_like_4 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=40.24 E-value=1.2e+02 Score=20.81 Aligned_cols=51 Identities=10% Similarity=0.040 Sum_probs=27.1
Q ss_pred hHHHHHHHHHH-hhhCCCeEEEEeccH--HHHHHHHHHHhhcCCeEEEEeCCCC
Q psy2046 24 KLKKLDEILPD-LKKNGHRVLIFSQFI--FVLDILGHYMDIRGWRHLRLDGATQ 74 (138)
Q Consensus 24 K~~~l~~ll~~-~~~~~~k~iif~~~~--~~~~~l~~~l~~~g~~~~~i~g~~~ 74 (138)
-...+.+-+.+ ..+.|-+++++.... .....+.+.+...++....+.+...
T Consensus 13 ~~~~~~~~i~~~~~~~g~~~~~~~~~~~~~~~~~~i~~l~~~~~dgiii~~~~~ 66 (263)
T cd06280 13 FFTAVSRAVEDAAYRAGLRVILCNTDEDPEKEAMYLELMEEERVTGVIFAPTRA 66 (263)
T ss_pred cHHHHHHHHHHHHHHCCCEEEEEeCCCCHHHHHHHHHHHHhCCCCEEEEeCCCC
Confidence 44445544443 345577777765432 2222344555666777777766543
No 414
>PF01206 TusA: Sulfurtransferase TusA; InterPro: IPR001455 SirA functions as a response regulator as part of a two-component system, where BarA is the sensor kinase. This system increases the expression of virulence genes and decreases the expression of motility genes []. BarA phosphorylates SirA, thereby activating the protein. Phosphorylated SirA directly activates virulence expression by interacting with hilA and hilC promoters, while repressing the flagellar regulon indirectly by binding to the csrB promoter, which in turn affects flagellar gene expression. Orthologues of SirA from Salmonella spp. can be found throughout proteobacteria, such as GacA in Psuedomonas spp., VarA in Vibrio cholerae, ExpA in Erwinia carotovora, LetA in Legionella pneumophila, and UvrY in Escherichia coli []. A sensor kinase for SirA is present in each of these organisms as well; the sensor kinase is known as BarA in E. coli and Salmonella spp., but has different names in other genera. In different species, SirA/BarA orthologues are required for virulence gene expression, exoenzyme and antibiotic production, motility, and biofilm formation. The structure of SirA consists of an alpha/beta sandwich with a beta-alpha-beta-alpha-beta(2) fold, comprising a mixed four-stranded beta-sheet stacked against two alpha-helices, both of which are nearly parallel to the strands of the beta-sheet []. Several uncharacterised bacterial proteins (73 to 81 amino-acid residues in length) that contain a well-conserved region in their N-terminal region show structural similarity to the SirA protein, including the E. coli protein YedF (P0AA31 from SWISSPROT), and other members of the UPF0033 family.; GO: 0016783 sulfurtransferase activity, 0008033 tRNA processing, 0005737 cytoplasm; PDB: 3LVJ_D 3LVK_B 1DCJ_A 3HZ7_A 1JDQ_A 1JE3_A 1PAV_A.
Probab=40.18 E-value=64 Score=17.56 Aligned_cols=33 Identities=6% Similarity=0.177 Sum_probs=27.8
Q ss_pred hCCCeEEEEeccHHHHHHHHHHHhhcCCeEEEE
Q psy2046 37 KNGHRVLIFSQFIFVLDILGHYMDIRGWRHLRL 69 (138)
Q Consensus 37 ~~~~k~iif~~~~~~~~~l~~~l~~~g~~~~~i 69 (138)
..|+.+.|.++.......+..+++..|+.+..+
T Consensus 25 ~~G~~l~v~~d~~~~~~di~~~~~~~g~~~~~~ 57 (70)
T PF01206_consen 25 PPGEVLEVLVDDPAAVEDIPRWCEENGYEVVEV 57 (70)
T ss_dssp GTT-EEEEEESSTTHHHHHHHHHHHHTEEEEEE
T ss_pred CCCCEEEEEECCccHHHHHHHHHHHCCCEEEEE
Confidence 468889899999999999999999999886655
No 415
>COG0159 TrpA Tryptophan synthase alpha chain [Amino acid transport and metabolism]
Probab=40.13 E-value=1.4e+02 Score=21.60 Aligned_cols=35 Identities=23% Similarity=0.114 Sum_probs=24.9
Q ss_pred HHHHHHHHhhcCCeEEEEeCCCChHHHHHHHHHHh
Q psy2046 52 LDILGHYMDIRGWRHLRLDGATQVSSRQELIDEYN 86 (138)
Q Consensus 52 ~~~l~~~l~~~g~~~~~i~g~~~~~~R~~~~~~F~ 86 (138)
.+.+....++.|+.+..+-..++..+|.+.+.+-.
T Consensus 136 ~~~~~~~~~~~gi~~I~lvaPtt~~~rl~~i~~~a 170 (265)
T COG0159 136 SDELLKAAEKHGIDPIFLVAPTTPDERLKKIAEAA 170 (265)
T ss_pred HHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHhC
Confidence 44466666677888888888777777777777653
No 416
>KOG1503|consensus
Probab=39.76 E-value=87 Score=22.51 Aligned_cols=48 Identities=10% Similarity=0.013 Sum_probs=36.1
Q ss_pred HHHHHHHHhhhCCCeEEEEeccHHHHHHHHHHHhhcCCeEEEEeCCCC
Q psy2046 27 KLDEILPDLKKNGHRVLIFSQFIFVLDILGHYMDIRGWRHLRLDGATQ 74 (138)
Q Consensus 27 ~l~~ll~~~~~~~~k~iif~~~~~~~~~l~~~l~~~g~~~~~i~g~~~ 74 (138)
.+++.+.+-..+....+|...++.....-..+-++.....+++||...
T Consensus 154 fllqyiqe~ipdyrnavivaksp~~akka~syaerlrlglavihge~k 201 (354)
T KOG1503|consen 154 FLLQYIQEEIPDYRNAVIVAKSPGVAKKAQSYAERLRLGLAVIHGEQK 201 (354)
T ss_pred HHHHHHHHhCccccceEEEecCcchhhHHHhHHHHHhhceeEeecccc
Confidence 455666554555667888888898888877777777788899999754
No 417
>COG2217 ZntA Cation transport ATPase [Inorganic ion transport and metabolism]
Probab=39.70 E-value=1.3e+02 Score=25.21 Aligned_cols=21 Identities=10% Similarity=0.264 Sum_probs=16.1
Q ss_pred EEeCCCChHHHHHHHHHHhcC
Q psy2046 68 RLDGATQVSSRQELIDEYNRD 88 (138)
Q Consensus 68 ~i~g~~~~~~R~~~~~~F~~~ 88 (138)
.++++..|+++.+.+++++..
T Consensus 578 ~v~AellPedK~~~V~~l~~~ 598 (713)
T COG2217 578 EVRAELLPEDKAEIVRELQAE 598 (713)
T ss_pred hheccCCcHHHHHHHHHHHhc
Confidence 344457889999999999854
No 418
>TIGR01127 ilvA_1Cterm threonine dehydratase, medium form. A form of threonine dehydratase with two copies of the C-terminal domain Pfam:PF00585 is described by TIGR01124. This model describes a phylogenetically distinct form with a single copy of pfam00585. This form branches with the catabolic threonine dehydratase of E. coli; many members are designated as catabolic for this reason. However, the catabolic form lacks any pfam00585 domain. Many members of this model are found in species with other Ile biosynthetic enzymes.
Probab=39.68 E-value=1.6e+02 Score=22.10 Aligned_cols=66 Identities=11% Similarity=0.032 Sum_probs=51.0
Q ss_pred ccCchHHHHHHHHHHhhhCC-CeEEEEeccHHHHHHHHHHHhhcCCeEEEEeCCCChHHHHHHHHHH
Q psy2046 20 VESGKLKKLDEILPDLKKNG-HRVLIFSQFIFVLDILGHYMDIRGWRHLRLDGATQVSSRQELIDEY 85 (138)
Q Consensus 20 ~~s~K~~~l~~ll~~~~~~~-~k~iif~~~~~~~~~l~~~l~~~g~~~~~i~g~~~~~~R~~~~~~F 85 (138)
.-|-|.+.....+..+.+++ .+.||=+..-+....++-+-...|+++..+-....+..+...++.|
T Consensus 27 tgS~K~R~a~~~i~~~~~~~~~~~vv~aSsGN~g~alA~~a~~~G~~~~iv~p~~~~~~k~~~~~~~ 93 (380)
T TIGR01127 27 TGSFKIRGALNKIANLSEDQRQRGVVAASAGNHAQGVAYAAKKFGIKAVIVMPESAPPSKVKATKSY 93 (380)
T ss_pred CCCcHHHHHHHHHHhcchhccCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCCcHHHHHHHHHC
Confidence 45678888888887765554 3556666677888888888889999988877777777888888888
No 419
>PLN02790 transketolase
Probab=39.48 E-value=2e+02 Score=23.70 Aligned_cols=55 Identities=15% Similarity=0.210 Sum_probs=37.7
Q ss_pred HHHHHHHHhhcCCeEEEEeCC-CChHHHHHHHHHHhc-CCCceEEEEeccccccccCc
Q psy2046 52 LDILGHYMDIRGWRHLRLDGA-TQVSSRQELIDEYNR-DQDLFAFLLSTKAGGLGINL 107 (138)
Q Consensus 52 ~~~l~~~l~~~g~~~~~i~g~-~~~~~R~~~~~~F~~-~~~~~vll~~~~~~~~Gl~l 107 (138)
.+.+.+.++..|+++..+.|+ .+..+-.+.++.-++ .+.+.++.+.| .-|.|+..
T Consensus 189 ~~~~~~~f~a~G~~~~~vdgg~hd~~~l~~a~~~a~~~~~~P~lI~~~T-~kG~G~~~ 245 (654)
T PLN02790 189 TEDVDKRYEALGWHTIWVKNGNTDYDEIRAAIKEAKAVTDKPTLIKVTT-TIGYGSPN 245 (654)
T ss_pred chhHHHHHHHcCCeEEEECCCCCCHHHHHHHHHHHHhcCCCeEEEEEEE-eecCCCcc
Confidence 345677888889999999887 477777777776654 45565555544 45677764
No 420
>PF10879 DUF2674: Protein of unknown function (DUF2674); InterPro: IPR024246 This family of proteins with unknown function appears to be restricted to Rickettsia spp.
Probab=39.45 E-value=63 Score=17.31 Aligned_cols=30 Identities=20% Similarity=0.481 Sum_probs=23.6
Q ss_pred CCeEEEEeccHHHHHHHHHHHhhcCCeEEEE
Q psy2046 39 GHRVLIFSQFIFVLDILGHYMDIRGWRHLRL 69 (138)
Q Consensus 39 ~~k~iif~~~~~~~~~l~~~l~~~g~~~~~i 69 (138)
-+|+|-|+.+..+++.+...+++ |+..+.+
T Consensus 5 ~qk~isfsehkadierikk~iee-gwaivkl 34 (67)
T PF10879_consen 5 TQKVISFSEHKADIERIKKSIEE-GWAIVKL 34 (67)
T ss_pred hhceeehhhhhhhHHHHHHHHhc-CeEEEEE
Confidence 46899999999999999988864 6665544
No 421
>COG3260 Ni,Fe-hydrogenase III small subunit [Energy production and conversion]
Probab=39.39 E-value=1.1e+02 Score=19.95 Aligned_cols=33 Identities=18% Similarity=0.175 Sum_probs=27.7
Q ss_pred eEEEEeCCCChHHHHHHHHHHhcCCCceEEEEe
Q psy2046 65 RHLRLDGATQVSSRQELIDEYNRDQDLFAFLLS 97 (138)
Q Consensus 65 ~~~~i~g~~~~~~R~~~~~~F~~~~~~~vll~~ 97 (138)
.+..++|.++..-|+.+.+.+..-+.++++++.
T Consensus 51 DiLlVTG~vT~~~~e~lkk~Yea~PePKiViA~ 83 (148)
T COG3260 51 DILLVTGAVTRQMREPLKKAYEAMPEPKIVIAV 83 (148)
T ss_pred cEEEEeccccHHHHHHHHHHHHhCCCCcEEEEE
Confidence 367899999999999999999987788766653
No 422
>TIGR00283 arch_pth2 peptidyl-tRNA hydrolase. This model describes an archaeal/eukaryotic form of peptidyl-tRNA hydrolase. Most bacterial forms are described by TIGR00447.
Probab=39.29 E-value=95 Score=19.31 Aligned_cols=38 Identities=13% Similarity=0.028 Sum_probs=27.3
Q ss_pred HHHhhhCCC-eEEEEeccHHHHHHHHHHHhhcCCeEEEE
Q psy2046 32 LPDLKKNGH-RVLIFSQFIFVLDILGHYMDIRGWRHLRL 69 (138)
Q Consensus 32 l~~~~~~~~-k~iif~~~~~~~~~l~~~l~~~g~~~~~i 69 (138)
+..+...|. |+++=++..+.+..|....+..|+++..+
T Consensus 41 ~~~W~~~G~~KVvlk~~~~~el~~l~~~a~~~~l~~~~v 79 (115)
T TIGR00283 41 RRKWLDEGQKKVVLKVNSLEELLEIYHKAESLGLVTGLI 79 (115)
T ss_pred HHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHcCCCEEEE
Confidence 344445554 57777788888888888888888886655
No 423
>PRK01415 hypothetical protein; Validated
Probab=39.21 E-value=59 Score=23.22 Aligned_cols=38 Identities=11% Similarity=0.140 Sum_probs=31.5
Q ss_pred hCCCeEEEEeccHHHHHHHHHHHhhcCCe-EEEEeCCCC
Q psy2046 37 KNGHRVLIFSQFIFVLDILGHYMDIRGWR-HLRLDGATQ 74 (138)
Q Consensus 37 ~~~~k~iif~~~~~~~~~l~~~l~~~g~~-~~~i~g~~~ 74 (138)
..++++++||..-.-....+..|.+.|+. +..+.|+..
T Consensus 169 ~k~k~Iv~yCtgGiRs~kAa~~L~~~Gf~~Vy~L~GGi~ 207 (247)
T PRK01415 169 LKGKKIAMVCTGGIRCEKSTSLLKSIGYDEVYHLKGGIL 207 (247)
T ss_pred cCCCeEEEECCCChHHHHHHHHHHHcCCCcEEEechHHH
Confidence 34678999998888888899999999996 677888764
No 424
>KOG4175|consensus
Probab=39.20 E-value=1.3e+02 Score=21.02 Aligned_cols=39 Identities=18% Similarity=0.098 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHhhcCCeEEEEeCCCChHHHHHHHHHHhc
Q psy2046 49 IFVLDILGHYMDIRGWRHLRLDGATQVSSRQELIDEYNR 87 (138)
Q Consensus 49 ~~~~~~l~~~l~~~g~~~~~i~g~~~~~~R~~~~~~F~~ 87 (138)
++....+.+..+++|+..+.+....+.++|.+.+..-.+
T Consensus 134 pEEa~~~Rne~~k~gislvpLvaPsTtdeRmell~~~ad 172 (268)
T KOG4175|consen 134 PEEAETLRNEARKHGISLVPLVAPSTTDERMELLVEAAD 172 (268)
T ss_pred hHHHHHHHHHHHhcCceEEEeeCCCChHHHHHHHHHhhc
Confidence 466777888889999999999999999999999887643
No 425
>TIGR00537 hemK_rel_arch HemK-related putative methylase. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.
Probab=39.12 E-value=1.1e+02 Score=20.04 Aligned_cols=43 Identities=23% Similarity=0.210 Sum_probs=24.7
Q ss_pred HHHHHHhhhCCCeEEEEeccHHHHHHHHHHHhhcCCeEEEEeC
Q psy2046 29 DEILPDLKKNGHRVLIFSQFIFVLDILGHYMDIRGWRHLRLDG 71 (138)
Q Consensus 29 ~~ll~~~~~~~~k~iif~~~~~~~~~l~~~l~~~g~~~~~i~g 71 (138)
.+.+..+.+++.++++..........+.+.|++.|+.+..+..
T Consensus 123 l~~~~~~Lk~gG~~~~~~~~~~~~~~~~~~l~~~gf~~~~~~~ 165 (179)
T TIGR00537 123 LDELPEILKEGGRVQLIQSSLNGEPDTFDKLDERGFRYEIVAE 165 (179)
T ss_pred HHhHHHhhCCCCEEEEEEeccCChHHHHHHHHhCCCeEEEEEE
Confidence 3333344555556655555444466677777777777655543
No 426
>TIGR00262 trpA tryptophan synthase, alpha subunit. Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. The alpha chain is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. In bacteria and plants each domain is found on a separate subunit (alpha and beta chains), while in fungi the two domains are fused together on a single multifunctional protein. The signature pattern for trpA contains three conserved acidic residues. [LIVM]-E-[LIVM]-G-x(2)-[FYC]-[ST]-[DE]-[PA]-[LIVMY]-[AGLI]-[DE]-G and this is located between residues 43-58 of the model. The Sulfolobus solfataricus trpA is known to be quite divergent from other known trpA sequences.
Probab=39.05 E-value=1.4e+02 Score=21.26 Aligned_cols=52 Identities=15% Similarity=0.063 Sum_probs=23.5
Q ss_pred HHhhhCCCeEEEEeccH-HHHHHHHHHHhhcCCeEEEEeCCCChHHHHHHHHH
Q psy2046 33 PDLKKNGHRVLIFSQFI-FVLDILGHYMDIRGWRHLRLDGATQVSSRQELIDE 84 (138)
Q Consensus 33 ~~~~~~~~k~iif~~~~-~~~~~l~~~l~~~g~~~~~i~g~~~~~~R~~~~~~ 84 (138)
..+.+.|-..+++-..+ +..+.+.+.+++.|+....+-...+..+|.+.+.+
T Consensus 109 ~~~~~aGvdgviipDlp~ee~~~~~~~~~~~gl~~i~lv~P~T~~eri~~i~~ 161 (256)
T TIGR00262 109 AKCKEVGVDGVLVADLPLEESGDLVEAAKKHGVKPIFLVAPNADDERLKQIAE 161 (256)
T ss_pred HHHHHcCCCEEEECCCChHHHHHHHHHHHHCCCcEEEEECCCCCHHHHHHHHH
Confidence 33333443333333322 23344444555556665555555444455444444
No 427
>PF02310 B12-binding: B12 binding domain; InterPro: IPR006158 The cobalamin (vitamin B12) binding domain can bind two different forms of the cobalamin cofactor, with cobalt bonded either to a methyl group (methylcobalamin) or to 5'-deoxyadenosine (adenosylcobalamin). Cobalamin-binding domains are mainly found in two families of enzymes present in animals and prokaryotes, which perform distinct kinds of reactions at the cobalt-carbon bond. Enzymes that require methylcobalamin carry out methyl transfer reactions. Enzymes that require adenosylcobalamin catalyse reactions in which the first step is the cleavage of adenosylcobalamin to form cob(II)alamin and the 5'-deoxyadenosyl radical, and thus act as radical generators. In both types of enzymes the B12-binding domain uses a histidine to bind the cobalt atom of cobalamin cofactors. This histidine is embedded in a DXHXXG sequence, the most conserved primary sequence motif of the domain [, , ]. Proteins containing the cobalamin-binding domain include: Animal and prokaryotic methionine synthase (2.1.1.13 from EC), which catalyse the transfer of a methyl group from methyl-cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Animal and prokaryotic methylmalonyl-CoA mutase (5.4.99.2 from EC), which are involved in the degradation of several amino acids, odd-chain fatty acids and cholesterol via propionyl-CoA to the tricarboxylic acid cycle. Prokaryotic lysine 5,6-aminomutase (5.4.3.4 from EC). Prokaryotic glutamate mutase (5.4.99.1 from EC) []. Prokaryotic methyleneglutarate mutase (5.4.99.4 from EC). Prokaryotic isobutyryl-CoA mutase (5.4.99.13 from EC). The core structure of the cobalamin-binding domain is characterised by a five-stranded alpha/beta (Rossmann) fold, which consists of 5 parallel beta-sheets surrounded by 4-5 alpha helices in three layers (alpha/beta/alpha) []. Upon binding cobalamin, important elements of the binding site appear to become structured, including an alpha-helix that forms on one side of the cleft accommodating the nucleotide 'tail' of the cofactor. In cobalamin, the cobalt atom can be either free (dmb-off) or bound to dimethylbenzimidazole (dmb-on) according to the pH. When bound to the cobalamin-binding domain, the dimethylbenzimidazole ligand is replaced by the active histidine (His-on) of the DXHXXG motif. The replacement of dimethylbenzimidazole by histidine allows switching between the catalytic and activation cycles []. In methionine synthase the cobalamin cofactor is sandwiched between the cobalamin-binding domain and an approximately 90 residues N-terminal domain forming a helical bundle comprising two pairs of antiparallel helices []. In methionine synthase, there is a second, adjacent domain involved in cobalamin binding that forms a 4-helical bundle cap (IPR003759 from INTERPRO); in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO) [].; GO: 0031419 cobalamin binding, 0046872 metal ion binding; PDB: 1Y80_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 3KP1_A 3KOW_A 3KOZ_A ....
Probab=38.99 E-value=88 Score=18.82 Aligned_cols=59 Identities=14% Similarity=0.059 Sum_probs=29.4
Q ss_pred hCCCeEEEEeccHHHHHHHHHHHhhcCCeEEEEeC-CCChH-HHHHHHHHHhc-CCCceEEEE
Q psy2046 37 KNGHRVLIFSQFIFVLDILGHYMDIRGWRHLRLDG-ATQVS-SRQELIDEYNR-DQDLFAFLL 96 (138)
Q Consensus 37 ~~~~k~iif~~~~~~~~~l~~~l~~~g~~~~~i~g-~~~~~-~R~~~~~~F~~-~~~~~vll~ 96 (138)
+.|..+.++-.. ...+.+.+.+.+.+...+.++. ..+.. .-.++++..+. .+...+++.
T Consensus 26 ~~G~~v~~~d~~-~~~~~l~~~~~~~~pd~V~iS~~~~~~~~~~~~l~~~~k~~~p~~~iv~G 87 (121)
T PF02310_consen 26 KAGHEVDILDAN-VPPEELVEALRAERPDVVGISVSMTPNLPEAKRLARAIKERNPNIPIVVG 87 (121)
T ss_dssp HTTBEEEEEESS-B-HHHHHHHHHHTTCSEEEEEESSSTHHHHHHHHHHHHHTTCTTSEEEEE
T ss_pred HCCCeEEEECCC-CCHHHHHHHHhcCCCcEEEEEccCcCcHHHHHHHHHHHHhcCCCCEEEEE
Confidence 346666555332 2336666777776777777766 33222 22334444443 234444443
No 428
>PRK08197 threonine synthase; Validated
Probab=38.79 E-value=1.7e+02 Score=22.18 Aligned_cols=66 Identities=15% Similarity=-0.063 Sum_probs=49.7
Q ss_pred ccCchHHHHHHHHHHhhhCCCeEEEEeccHHHHHHHHHHHhhcCCeEEEEeCCCChHHHHHHHHHH
Q psy2046 20 VESGKLKKLDEILPDLKKNGHRVLIFSQFIFVLDILGHYMDIRGWRHLRLDGATQVSSRQELIDEY 85 (138)
Q Consensus 20 ~~s~K~~~l~~ll~~~~~~~~k~iif~~~~~~~~~l~~~l~~~g~~~~~i~g~~~~~~R~~~~~~F 85 (138)
.-|-|-+...-++....+.+.+.||=...-+..-.++.+-...|+++..+-.......+...++.+
T Consensus 107 tGSfKdRga~~~i~~a~~~g~~~vv~aSsGN~g~alA~~aa~~G~~~~v~vp~~~~~~k~~~~~~~ 172 (394)
T PRK08197 107 TGSFKARGLAVGVSRAKELGVKHLAMPTNGNAGAAWAAYAARAGIRATIFMPADAPEITRLECALA 172 (394)
T ss_pred CcCcHHhHHHHHHHHHHHcCCCEEEEeCCcHHHHHHHHHHHHcCCcEEEEEcCCCCHHHHHHHHHc
Confidence 456788877777777667777777766677888888888888999987777665556677777776
No 429
>PRK05569 flavodoxin; Provisional
Probab=38.31 E-value=1e+02 Score=19.29 Aligned_cols=58 Identities=7% Similarity=0.163 Sum_probs=34.3
Q ss_pred hHHHHHHHHHHhhhCCCeEEEEeccH----HHHHHHHHHHhhcCCeE---EEEeCCCChHHHHHH
Q psy2046 24 KLKKLDEILPDLKKNGHRVLIFSQFI----FVLDILGHYMDIRGWRH---LRLDGATQVSSRQEL 81 (138)
Q Consensus 24 K~~~l~~ll~~~~~~~~k~iif~~~~----~~~~~l~~~l~~~g~~~---~~i~g~~~~~~R~~~ 81 (138)
.+..+.+.+......++++.+|+.+- ...+.+.+.|+..|+.+ ..+.|..+.++.+++
T Consensus 68 ~~~~~~~~l~~~~~~~K~v~~f~t~g~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~p~~~~~~~~ 132 (141)
T PRK05569 68 EMAPFLDQFKLTPNENKKCILFGSYGWDNGEFMKLWKDRMKDYGFNVIGDLAVNESPNKEELNSA 132 (141)
T ss_pred HHHHHHHHhhccCcCCCEEEEEeCCCCCCCcHHHHHHHHHHHCCCeEeeeEEEccCCCHHHHHHH
Confidence 34444444443333577888888753 33556777887777754 455666555555443
No 430
>PRK00162 glpE thiosulfate sulfurtransferase; Validated
Probab=38.22 E-value=87 Score=18.55 Aligned_cols=38 Identities=13% Similarity=0.175 Sum_probs=25.6
Q ss_pred hCCCeEEEEeccHHHHHHHHHHHhhcCCe-EEEEeCCCC
Q psy2046 37 KNGHRVLIFSQFIFVLDILGHYMDIRGWR-HLRLDGATQ 74 (138)
Q Consensus 37 ~~~~k~iif~~~~~~~~~l~~~l~~~g~~-~~~i~g~~~ 74 (138)
..+..++++|..-.........|+..|+. +..+.|+..
T Consensus 56 ~~~~~ivv~c~~g~~s~~a~~~L~~~G~~~v~~l~GG~~ 94 (108)
T PRK00162 56 DFDTPVMVMCYHGNSSQGAAQYLLQQGFDVVYSIDGGFE 94 (108)
T ss_pred CCCCCEEEEeCCCCCHHHHHHHHHHCCchheEEecCCHH
Confidence 34557777887655556666778888886 556777663
No 431
>PRK00142 putative rhodanese-related sulfurtransferase; Provisional
Probab=38.08 E-value=60 Score=23.97 Aligned_cols=37 Identities=14% Similarity=0.314 Sum_probs=30.7
Q ss_pred CCCeEEEEeccHHHHHHHHHHHhhcCCe-EEEEeCCCC
Q psy2046 38 NGHRVLIFSQFIFVLDILGHYMDIRGWR-HLRLDGATQ 74 (138)
Q Consensus 38 ~~~k~iif~~~~~~~~~l~~~l~~~g~~-~~~i~g~~~ 74 (138)
.++++++||..-........+|.+.|++ +..+.|+..
T Consensus 170 kdk~IvvyC~~G~Rs~~aa~~L~~~Gf~~V~~L~GGi~ 207 (314)
T PRK00142 170 KDKKVVMYCTGGIRCEKASAWMKHEGFKEVYQLEGGII 207 (314)
T ss_pred CcCeEEEECCCCcHHHHHHHHHHHcCCCcEEEecchHH
Confidence 4678999998877778888899999996 778899875
No 432
>PRK08576 hypothetical protein; Provisional
Probab=38.03 E-value=1.4e+02 Score=23.29 Aligned_cols=53 Identities=15% Similarity=0.073 Sum_probs=37.2
Q ss_pred EEeccHHHHHHHHHHHhhc----CCeEEEEeCCCChHHHHHHHHHHhcCCCceEEEE
Q psy2046 44 IFSQFIFVLDILGHYMDIR----GWRHLRLDGATQVSSRQELIDEYNRDQDLFAFLL 96 (138)
Q Consensus 44 if~~~~~~~~~l~~~l~~~----g~~~~~i~g~~~~~~R~~~~~~F~~~~~~~vll~ 96 (138)
|.+...+++++++.++.+. ++.+..++|.-+.++-...++.--+++...++|+
T Consensus 4 ~~~r~~kda~a~~~~~~~~~~~~~~~v~~l~g~r~~~~~~~~~~~~~~~~~~~~~l~ 60 (438)
T PRK08576 4 IIVRSRKDAKAVKAINERFYGGWNLEVSSLGGARKFEEVEDNLEEALEDDYFPILLL 60 (438)
T ss_pred EEEeecccHHHHHHHHhhhcCCCceEEEecCCCCCHHHHHHHHHhhcccCCceEEEe
Confidence 4455567778887777653 5678889998888888877777545555555554
No 433
>PRK05638 threonine synthase; Validated
Probab=37.90 E-value=1.9e+02 Score=22.38 Aligned_cols=66 Identities=6% Similarity=-0.138 Sum_probs=49.6
Q ss_pred ccCchHHHHHHHHHHhhhCCCeEEEEeccHHHHHHHHHHHhhcCCeEEEEeCCCChHHHHHHHHHH
Q psy2046 20 VESGKLKKLDEILPDLKKNGHRVLIFSQFIFVLDILGHYMDIRGWRHLRLDGATQVSSRQELIDEY 85 (138)
Q Consensus 20 ~~s~K~~~l~~ll~~~~~~~~k~iif~~~~~~~~~l~~~l~~~g~~~~~i~g~~~~~~R~~~~~~F 85 (138)
.-|-|-....-++....+.+.+.||-...-+....++.+-...|+++..+-.......+...++.|
T Consensus 92 tGSfKdR~a~~~i~~a~~~g~~~vv~aSsGN~g~alA~~aa~~G~~~~i~vp~~~~~~k~~~~~~~ 157 (442)
T PRK05638 92 TGSFRDRLATVAVSYGLPYAANGFIVASDGNAAASVAAYSARAGKEAFVVVPRKVDKGKLIQMIAF 157 (442)
T ss_pred CCChHHHHHHHHHHHHHHcCCCEEEEeCCChHHHHHHHHHHHcCCCEEEEEeCCCCHHHHHHHHhc
Confidence 346677777777776666666666667777888889999889999987777766667777788887
No 434
>PF13167 GTP-bdg_N: GTP-binding GTPase N-terminal
Probab=37.89 E-value=92 Score=18.71 Aligned_cols=36 Identities=8% Similarity=0.037 Sum_probs=29.5
Q ss_pred HHHHHHHHHHhhcCCeEEEEeCCCChHHHHHHHHHH
Q psy2046 50 FVLDILGHYMDIRGWRHLRLDGATQVSSRQELIDEY 85 (138)
Q Consensus 50 ~~~~~l~~~l~~~g~~~~~i~g~~~~~~R~~~~~~F 85 (138)
.-++.|.......+...+.++...|+.+...+-+.+
T Consensus 44 GK~eei~~~~~~~~~d~vvfd~~Lsp~Q~rNLe~~~ 79 (95)
T PF13167_consen 44 GKVEEIKELIEELDADLVVFDNELSPSQQRNLEKAL 79 (95)
T ss_pred hHHHHHHHHHhhcCCCEEEECCCCCHHHHHHHHHHH
Confidence 347788888888899999999999988887777666
No 435
>cd06449 ACCD Aminocyclopropane-1-carboxylate deaminase (ACCD): Pyridoxal phosphate (PLP)-dependent enzyme which catalyzes the conversion of 1-aminocyclopropane-L-carboxylate (ACC), a precursor of the plant hormone ethylene, to alpha-ketobutyrate and ammonia.
Probab=37.66 E-value=1.6e+02 Score=21.40 Aligned_cols=65 Identities=15% Similarity=0.102 Sum_probs=44.8
Q ss_pred cCchHHHHHHHHHHhhhCCCeEEEEe--ccHHHHHHHHHHHhhcCCeEEEEeCCC-Ch-------HHHHHHHHHH
Q psy2046 21 ESGKLKKLDEILPDLKKNGHRVLIFS--QFIFVLDILGHYMDIRGWRHLRLDGAT-QV-------SSRQELIDEY 85 (138)
Q Consensus 21 ~s~K~~~l~~ll~~~~~~~~k~iif~--~~~~~~~~l~~~l~~~g~~~~~i~g~~-~~-------~~R~~~~~~F 85 (138)
.|.|.+.+..++....+.+.+.||=+ .+-+....++.+-+..|+++..+-... ++ ..+...++.|
T Consensus 33 gs~K~R~~~~~l~~a~~~g~~~vv~~ggs~GN~g~alA~~a~~~G~~~~i~v~~~~~~~~~~~~~~~~~~~~~~~ 107 (307)
T cd06449 33 GGNKIRKLEYLLPDALAKGADTLVTVGGIQSNHTRQVAAVAAKLGLKCVLVQENWVPYSDAVYDRVGNILLSRIM 107 (307)
T ss_pred cchHHHHHHHHHHHHHHcCCCEEEECCCchhHHHHHHHHHHHHcCCeEEEEecCCCCcccccccccccHHHHHHC
Confidence 35599999888887776776655544 345677888888888999976665543 32 2355566766
No 436
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=37.44 E-value=62 Score=21.83 Aligned_cols=39 Identities=8% Similarity=0.012 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHhhcCCeEEEEeCCCChHHHHHHHHHHhcCCCc
Q psy2046 49 IFVLDILGHYMDIRGWRHLRLDGATQVSSRQELIDEYNRDQDL 91 (138)
Q Consensus 49 ~~~~~~l~~~l~~~g~~~~~i~g~~~~~~R~~~~~~F~~~~~~ 91 (138)
+++.+.+.+.|....--.+.+|-.. |+-.+++++.....
T Consensus 117 ~~f~~~ve~vl~~~kpliatlHrrs----r~P~v~~ik~~~~v 155 (179)
T COG1618 117 KKFREAVEEVLKSGKPLIATLHRRS----RHPLVQRIKKLGGV 155 (179)
T ss_pred HHHHHHHHHHhcCCCcEEEEEeccc----CChHHHHhhhcCCE
Confidence 3555666666654333344555422 34466666655444
No 437
>COG0788 PurU Formyltetrahydrofolate hydrolase [Nucleotide transport and metabolism]
Probab=37.31 E-value=1.6e+02 Score=21.46 Aligned_cols=73 Identities=10% Similarity=-0.027 Sum_probs=38.3
Q ss_pred hcCCeEEEE--eCCCChHHHHHHHHHHhcCCCceEEEE-eccccccccCcCccCEEEEeCCCCC-----ccchhHHHHHH
Q psy2046 61 IRGWRHLRL--DGATQVSSRQELIDEYNRDQDLFAFLL-STKAGGLGINLTAADTVIIHDVDFN-----PYNDKQAEDRC 132 (138)
Q Consensus 61 ~~g~~~~~i--~g~~~~~~R~~~~~~F~~~~~~~vll~-~~~~~~~Gl~l~~~~~vi~~~~~~~-----~~~~~Q~~gR~ 132 (138)
..|+++..+ +.....++=.++++-...-....|+|+ ..++++-.+--.-.+.+|+...++- ..-|.||..|.
T Consensus 136 ~~~IPfhhip~~~~~k~e~E~~~~~ll~~~~~DlvVLARYMqILS~d~~~~~~g~iINIHHSFLPaF~GA~PY~QA~eRG 215 (287)
T COG0788 136 RFDIPFHHIPVTKENKAEAEARLLELLEEYGADLVVLARYMQILSPDFVERFPGKIINIHHSFLPAFIGANPYHQAYERG 215 (287)
T ss_pred HcCCCeeeccCCCCcchHHHHHHHHHHHHhCCCEEeehhhHhhCCHHHHHhccCcEEEecccccccCCCCChHHHHHhcC
Confidence 346775443 333323333334443333223334444 3455555555556777888765543 34688998885
Q ss_pred h
Q psy2046 133 H 133 (138)
Q Consensus 133 ~ 133 (138)
-
T Consensus 216 V 216 (287)
T COG0788 216 V 216 (287)
T ss_pred C
Confidence 4
No 438
>PRK07591 threonine synthase; Validated
Probab=37.23 E-value=1.9e+02 Score=22.25 Aligned_cols=65 Identities=11% Similarity=-0.050 Sum_probs=49.3
Q ss_pred cCchHHHHHHHHHHhhhCCCeEEEEeccHHHHHHHHHHHhhcCCeEEEEeCCCChHHHHHHHHHH
Q psy2046 21 ESGKLKKLDEILPDLKKNGHRVLIFSQFIFVLDILGHYMDIRGWRHLRLDGATQVSSRQELIDEY 85 (138)
Q Consensus 21 ~s~K~~~l~~ll~~~~~~~~k~iif~~~~~~~~~l~~~l~~~g~~~~~i~g~~~~~~R~~~~~~F 85 (138)
-|-|.+...-++....+.+.+.|+-...-+..-.++.+-...|+++..+-.......+...++.|
T Consensus 118 GSfKdRga~~~v~~A~~~g~~~vv~aSsGN~g~alA~~aa~~Gl~~~I~vP~~~~~~k~~~~~~~ 182 (421)
T PRK07591 118 HSFKDRVVSVALTAARELGFTTVACASTGNLANSVAAHAARAGLDSCVFIPADLEAGKIVGTLVY 182 (421)
T ss_pred cChHHHHHHHHHHHHHHcCCCEEEEeCCCHHHHHHHHHHHHcCCCEEEEEcCCCCHHHHHHHHHc
Confidence 46788877777777777777777777777888888888888999987777665556666777776
No 439
>TIGR01459 HAD-SF-IIA-hyp4 HAD-superfamily class IIA hydrolase, TIGR01459. This hypothetical equivalog is a member of the Class IIA subfamily of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. The sequences modelled by this equivalog are all gram negative and primarily alpha proteobacteria. Only one sequence hase been annotated as other than "hypothetical." That one, from Brucella, is annotated as related to NagD, but only by sequence similarity and should be treated with some skepticism. (See comments for Class IIA subfamily)
Probab=37.18 E-value=64 Score=22.46 Aligned_cols=42 Identities=14% Similarity=0.018 Sum_probs=31.5
Q ss_pred HHHHHHHHHHhhhCCCeEEEEeccHHHHHHHHHHHhhcCCeE
Q psy2046 25 LKKLDEILPDLKKNGHRVLIFSQFIFVLDILGHYMDIRGWRH 66 (138)
Q Consensus 25 ~~~l~~ll~~~~~~~~k~iif~~~~~~~~~l~~~l~~~g~~~ 66 (138)
+.-..++|..+.+.|.++.|.++.......+.+.|...|+..
T Consensus 26 ~pga~e~L~~L~~~G~~~~ivTN~~~~~~~~~~~L~~~gl~~ 67 (242)
T TIGR01459 26 YPGAVQNLNKIIAQGKPVYFVSNSPRNIFSLHKTLKSLGINA 67 (242)
T ss_pred CccHHHHHHHHHHCCCEEEEEeCCCCChHHHHHHHHHCCCCc
Confidence 455666777777789899999987776555667888888764
No 440
>PRK14974 cell division protein FtsY; Provisional
Probab=37.11 E-value=1.8e+02 Score=21.81 Aligned_cols=77 Identities=18% Similarity=0.206 Sum_probs=40.7
Q ss_pred CchHHHHHHHHHHhhhCCCeEEEEecc---HHHHHHHHHHHhhcCCeEEEEeCCCChHH-HHHHHHHHhcCCCceEEEEe
Q psy2046 22 SGKLKKLDEILPDLKKNGHRVLIFSQF---IFVLDILGHYMDIRGWRHLRLDGATQVSS-RQELIDEYNRDQDLFAFLLS 97 (138)
Q Consensus 22 s~K~~~l~~ll~~~~~~~~k~iif~~~---~~~~~~l~~~l~~~g~~~~~i~g~~~~~~-R~~~~~~F~~~~~~~vll~~ 97 (138)
++|-..+..+...+...+.++++.... ....+.+..+....|+++...+.+..+.. -...++..+... ..++|+.
T Consensus 151 vGKTTtiakLA~~l~~~g~~V~li~~Dt~R~~a~eqL~~~a~~lgv~v~~~~~g~dp~~v~~~ai~~~~~~~-~DvVLID 229 (336)
T PRK14974 151 TGKTTTIAKLAYYLKKNGFSVVIAAGDTFRAGAIEQLEEHAERLGVKVIKHKYGADPAAVAYDAIEHAKARG-IDVVLID 229 (336)
T ss_pred CCHHHHHHHHHHHHHHcCCeEEEecCCcCcHHHHHHHHHHHHHcCCceecccCCCCHHHHHHHHHHHHHhCC-CCEEEEE
Confidence 477777777776666666676554432 24456666666667777554333233222 223334333322 2356665
Q ss_pred cc
Q psy2046 98 TK 99 (138)
Q Consensus 98 ~~ 99 (138)
|.
T Consensus 230 Ta 231 (336)
T PRK14974 230 TA 231 (336)
T ss_pred CC
Confidence 44
No 441
>TIGR01274 ACC_deam 1-aminocyclopropane-1-carboxylate deaminase. This pyridoxal phosphate-dependent enzyme degrades 1-aminocyclopropane-1-carboxylate, which in plants is a precursor of the ripening hormone ethylene, to ammonia and alpha-ketoglutarate. This model includes all members of this family for which function has been demonstrated experimentally, but excludes a closely related family often annotated as putative members of this family.
Probab=37.01 E-value=1.7e+02 Score=21.62 Aligned_cols=65 Identities=14% Similarity=0.096 Sum_probs=45.7
Q ss_pred cCchHHHHHHHHHHhhhCCCeEEEEe--ccHHHHHHHHHHHhhcCCeEEEEeCCCC--------hHHHHHHHHHH
Q psy2046 21 ESGKLKKLDEILPDLKKNGHRVLIFS--QFIFVLDILGHYMDIRGWRHLRLDGATQ--------VSSRQELIDEY 85 (138)
Q Consensus 21 ~s~K~~~l~~ll~~~~~~~~k~iif~--~~~~~~~~l~~~l~~~g~~~~~i~g~~~--------~~~R~~~~~~F 85 (138)
-|.|...+..++.+..+.+...|+-+ .+-+....++.+-...|+++..+-+... +..+...++.|
T Consensus 47 gs~K~R~~~~~l~~a~~~G~~~vvs~ggs~gN~g~alA~~a~~~Gl~~~iv~~~~~~~~~~~~~~~~~~~~~~~~ 121 (337)
T TIGR01274 47 GGNKTRKLEYLIPDAQAQGCTTLVSIGGIQSNQTRQVAAVAAHLGMKCVLVQENWVNYSDAVYDRVGNIQLSRIM 121 (337)
T ss_pred cchHHHHHHHHHHHHHHcCCCEEEECCCCcchHHHHHHHHHHHcCCcEEEEeccCCCccccchhccchHHHHHHc
Confidence 45599999999988777776665543 2346677888888889999887766521 13555667776
No 442
>COG1412 Uncharacterized proteins of PilT N-term./Vapc superfamily [General function prediction only]
Probab=36.72 E-value=1.2e+02 Score=19.61 Aligned_cols=17 Identities=18% Similarity=0.178 Sum_probs=7.5
Q ss_pred HHHHHhhcCCeEEEEeC
Q psy2046 55 LGHYMDIRGWRHLRLDG 71 (138)
Q Consensus 55 l~~~l~~~g~~~~~i~g 71 (138)
|.+.+++.|+++..+.|
T Consensus 109 Lk~rlr~~GIPvi~lr~ 125 (136)
T COG1412 109 LKRRLRENGIPVITLRQ 125 (136)
T ss_pred HHHHHHHcCCCEEEEeC
Confidence 33344444555444443
No 443
>KOG3282|consensus
Probab=36.68 E-value=1.4e+02 Score=20.43 Aligned_cols=41 Identities=12% Similarity=0.067 Sum_probs=29.3
Q ss_pred HHHHhhhCC-CeEEEEeccHHHHHHHHHHHhhcCCeEEEEeC
Q psy2046 31 ILPDLKKNG-HRVLIFSQFIFVLDILGHYMDIRGWRHLRLDG 71 (138)
Q Consensus 31 ll~~~~~~~-~k~iif~~~~~~~~~l~~~l~~~g~~~~~i~g 71 (138)
++..+.+.| .|++|=++....+..|...-+..|+.+..++-
T Consensus 115 ll~~We~~GQ~KIvvk~~~e~~l~~l~~~A~~~gl~t~~i~D 156 (190)
T KOG3282|consen 115 LLRRWENCGQAKIVVKAESEEELMELQKDAKKLGLYTHLIQD 156 (190)
T ss_pred HHHHHHHcCCceEEEEcCCHHHHHHHHHHHHHcCCcEEEEEc
Confidence 455555555 48999999888777777777788887655543
No 444
>PLN02565 cysteine synthase
Probab=36.62 E-value=1.7e+02 Score=21.55 Aligned_cols=66 Identities=17% Similarity=0.076 Sum_probs=50.7
Q ss_pred ccCchHHHHHHHHHHhhhCCC-----eEEEEeccHHHHHHHHHHHhhcCCeEEEEeCCCChHHHHHHHHHH
Q psy2046 20 VESGKLKKLDEILPDLKKNGH-----RVLIFSQFIFVLDILGHYMDIRGWRHLRLDGATQVSSRQELIDEY 85 (138)
Q Consensus 20 ~~s~K~~~l~~ll~~~~~~~~-----k~iif~~~~~~~~~l~~~l~~~g~~~~~i~g~~~~~~R~~~~~~F 85 (138)
.-|-|.+....++....+.+. +.||=+..-...-.++-+-+..|+++..+-.......+...++.|
T Consensus 42 tGSfKdR~A~~~l~~~~~~g~~~~g~~~vv~aSsGN~g~alA~~a~~~G~~~~ivvp~~~~~~k~~~i~~~ 112 (322)
T PLN02565 42 CSSVKDRIGYSMITDAEEKGLIKPGESVLIEPTSGNTGIGLAFMAAAKGYKLIITMPASMSLERRIILLAF 112 (322)
T ss_pred ccchHHHHHHHHHHHHHHcCCCCCCCcEEEEECCChHHHHHHHHHHHcCCeEEEEeCCCCcHHHHHHHHHc
Confidence 346788877777777655442 556766677888888888888999988887777778888999998
No 445
>PRK05370 argininosuccinate synthase; Validated
Probab=36.38 E-value=1.8e+02 Score=22.86 Aligned_cols=65 Identities=15% Similarity=-0.031 Sum_probs=39.7
Q ss_pred HHHhhhCCCeEEEEeccHHHHHHHHHHHhhcCCeEEEEeCCCCh---HHHHHHHHHHhcCCCceEEEEe
Q psy2046 32 LPDLKKNGHRVLIFSQFIFVLDILGHYMDIRGWRHLRLDGATQV---SSRQELIDEYNRDQDLFAFLLS 97 (138)
Q Consensus 32 l~~~~~~~~k~iif~~~~~~~~~l~~~l~~~g~~~~~i~g~~~~---~~R~~~~~~F~~~~~~~vll~~ 97 (138)
|+++ ..++|+++-.+---+.-.+..+|++.|+.+..++..+-+ ++.+.+-+++..-.-..+.++.
T Consensus 5 ~~~l-~~~~KVvLAYSGGLDTSv~l~wL~e~~~eVia~~aDvGQ~~~ed~~~i~~kA~~~GA~~~~viD 72 (447)
T PRK05370 5 LKHL-PVGQRVGIAFSGGLDTSAALLWMRQKGAVPYAYTANLGQPDEDDYDAIPRRAMEYGAENARLID 72 (447)
T ss_pred hhhC-CCCCEEEEEecCCchHHHHHHHHHhcCCeEEEEEEECCCCCccchHHHHHHHHHhCCCEEEEec
Confidence 4443 346676655555555667778887778888888887765 4555566665543333344443
No 446
>TIGR02189 GlrX-like_plant Glutaredoxin-like family. This family of glutaredoxin-like proteins is aparrently limited to plants. Multiple isoforms are found in A. thaliana and O.sativa.
Probab=35.80 E-value=97 Score=18.40 Aligned_cols=36 Identities=14% Similarity=0.117 Sum_probs=26.3
Q ss_pred CCeEEEEeccH-HHHHHHHHHHhhcCCeEEEEeCCCC
Q psy2046 39 GHRVLIFSQFI-FVLDILGHYMDIRGWRHLRLDGATQ 74 (138)
Q Consensus 39 ~~k~iif~~~~-~~~~~l~~~l~~~g~~~~~i~g~~~ 74 (138)
..+++||+... -.+......|...|+++..+.=...
T Consensus 7 ~~~Vvvysk~~Cp~C~~ak~~L~~~~i~~~~vdid~~ 43 (99)
T TIGR02189 7 EKAVVIFSRSSCCMCHVVKRLLLTLGVNPAVHEIDKE 43 (99)
T ss_pred cCCEEEEECCCCHHHHHHHHHHHHcCCCCEEEEcCCC
Confidence 34788888654 5577888899999998776655543
No 447
>PF04378 RsmJ: Ribosomal RNA small subunit methyltransferase D, RsmJ; InterPro: IPR007473 This is a bacterial protein of unknown function, possibly secreted.; PDB: 2OO3_A.
Probab=35.70 E-value=1.6e+02 Score=20.99 Aligned_cols=87 Identities=9% Similarity=-0.001 Sum_probs=42.0
Q ss_pred CCCeEEEEeccH--------HHHHHHHHHHhhcCCe-EEEEeCCCChHHHHHHHHHHhcCCCceEEEEeccc----cccc
Q psy2046 38 NGHRVLIFSQFI--------FVLDILGHYMDIRGWR-HLRLDGATQVSSRQELIDEYNRDQDLFAFLLSTKA----GGLG 104 (138)
Q Consensus 38 ~~~k~iif~~~~--------~~~~~l~~~l~~~g~~-~~~i~g~~~~~~R~~~~~~F~~~~~~~vll~~~~~----~~~G 104 (138)
...+.+|+.+-. ...+.+.+.+++.... |..-+-=.....-.+..++++.....+++.+-..+ .+.|
T Consensus 123 ~~rRglVLIDPpYE~~~dy~~v~~~l~~a~kR~~~G~~~iWYPi~~~~~~~~~~~~l~~~~~~~~l~~El~v~~~~~~~g 202 (245)
T PF04378_consen 123 PERRGLVLIDPPYEQKDDYQRVVDALAKALKRWPTGVYAIWYPIKDRERVDRFLRALKALGIKKVLRAELRVRPPDSPRG 202 (245)
T ss_dssp TTS-EEEEE-----STTHHHHHHHHHHHHHHH-TTSEEEEEEEESSHHHHHHHHHHHHHH-SSE-EEEEEE---SS---S
T ss_pred CCCCeEEEECCCCCCchHHHHHHHHHHHHHHhcCCcEEEEEeecccHHHHHHHHHHHHhcCCCCeEEEEEEecCCCCcCc
Confidence 345777777632 4466666666664322 55545445555555566777644333444443333 2344
Q ss_pred cCcCccCEEEEeCCCCCccchhH
Q psy2046 105 INLTAADTVIIHDVDFNPYNDKQ 127 (138)
Q Consensus 105 l~l~~~~~vi~~~~~~~~~~~~Q 127 (138)
++ .+-+++++|||......+
T Consensus 203 m~---GSGm~iiNPPw~l~~~l~ 222 (245)
T PF04378_consen 203 MN---GSGMLIINPPWTLDEELE 222 (245)
T ss_dssp -----EEEEEEES--TTHHHHHH
T ss_pred ee---cceEEEEcCCccHHHHHH
Confidence 43 666888899998765543
No 448
>PRK13104 secA preprotein translocase subunit SecA; Reviewed
Probab=35.68 E-value=2.9e+02 Score=23.90 Aligned_cols=59 Identities=15% Similarity=0.071 Sum_probs=38.7
Q ss_pred CchHH-HHHHHHHHhhhCCCeEEEEeccHHHHHHHHHHHh----hcCCeEEEEeCCCChHHHHHH
Q psy2046 22 SGKLK-KLDEILPDLKKNGHRVLIFSQFIFVLDILGHYMD----IRGWRHLRLDGATQVSSRQEL 81 (138)
Q Consensus 22 s~K~~-~l~~ll~~~~~~~~k~iif~~~~~~~~~l~~~l~----~~g~~~~~i~g~~~~~~R~~~ 81 (138)
++|.- .++-++... -.|..++|.+.+..-+....+.+. ..|+++..+.|+++..+|...
T Consensus 106 eGKTL~a~Lpa~~~a-l~G~~V~VvTpn~yLA~qd~e~m~~l~~~lGLtv~~i~gg~~~~~r~~~ 169 (896)
T PRK13104 106 EGKTLVATLPAYLNA-ISGRGVHIVTVNDYLAKRDSQWMKPIYEFLGLTVGVIYPDMSHKEKQEA 169 (896)
T ss_pred CCchHHHHHHHHHHH-hcCCCEEEEcCCHHHHHHHHHHHHHHhcccCceEEEEeCCCCHHHHHHH
Confidence 45533 333444332 246679999998866555555544 458999999999988777544
No 449
>PRK08905 lipid A biosynthesis lauroyl acyltransferase; Validated
Probab=35.58 E-value=1.7e+02 Score=21.11 Aligned_cols=57 Identities=9% Similarity=0.198 Sum_probs=37.3
Q ss_pred HHHHhhhCCCeEEEEeccHHHHHHHHHHHhhcCCeEEEEeCCCChHHHHHHHHHHhcC
Q psy2046 31 ILPDLKKNGHRVLIFSQFIFVLDILGHYMDIRGWRHLRLDGATQVSSRQELIDEYNRD 88 (138)
Q Consensus 31 ll~~~~~~~~k~iif~~~~~~~~~l~~~l~~~g~~~~~i~g~~~~~~R~~~~~~F~~~ 88 (138)
.+.+...+++.+|+.+.+-...+....++... .+...+.-......-.+.+.+.+..
T Consensus 92 ~l~~a~~~gkgvIllt~H~GnwE~~~~~~~~~-~~~~~v~r~~~n~~~~~~~~~~R~~ 148 (289)
T PRK08905 92 HVEAALAEGRGILFLTPHLGCFEVTARYIAQR-FPLTAMFRPPRKAALRPLMEAGRAR 148 (289)
T ss_pred HHHHHHhcCCCEEEEecccchHHHHHHHHHhc-CCceEEEECCCCHHHHHHHHHHhcc
Confidence 34444566777888887777777776666554 5666666666656666667766654
No 450
>PTZ00237 acetyl-CoA synthetase; Provisional
Probab=35.45 E-value=2.4e+02 Score=22.85 Aligned_cols=62 Identities=21% Similarity=0.128 Sum_probs=41.3
Q ss_pred hHHHHHHHHHHh-hhCCCeEEEEeccHHHHHHHHHHHhhcCCeEEEEeCCCChHHHHHHHHHH
Q psy2046 24 KLKKLDEILPDL-KKNGHRVLIFSQFIFVLDILGHYMDIRGWRHLRLDGATQVSSRQELIDEY 85 (138)
Q Consensus 24 K~~~l~~ll~~~-~~~~~k~iif~~~~~~~~~l~~~l~~~g~~~~~i~g~~~~~~R~~~~~~F 85 (138)
+...+...|..+ ...|++|.|+.+..-..-...-+.-+.|.-++.++.+.+.++-...++..
T Consensus 101 ~v~~lA~~L~~~Gv~~GDrV~i~~~n~~e~~~~~lA~~~~Gav~vpl~~~~~~~~l~~~l~~~ 163 (647)
T PTZ00237 101 KVCEFSRVLLNLNISKNDNVLIYMANTLEPLIAMLSCARIGATHCVLFDGYSVKSLIDRIETI 163 (647)
T ss_pred HHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHhCcEEEeeCCCCCHHHHHHHHHhc
Confidence 344555555443 35688999999876654444444456688888999988877766666654
No 451
>COG2984 ABC-type uncharacterized transport system, periplasmic component [General function prediction only]
Probab=35.28 E-value=1.9e+02 Score=21.63 Aligned_cols=53 Identities=11% Similarity=0.019 Sum_probs=40.0
Q ss_pred cccCchHHHHHHHHHHhhhCCCeEEEEeccHH-----HHHHHHHHHhhcCCeEEEEeC
Q psy2046 19 VVESGKLKKLDEILPDLKKNGHRVLIFSQFIF-----VLDILGHYMDIRGWRHLRLDG 71 (138)
Q Consensus 19 ~~~s~K~~~l~~ll~~~~~~~~k~iif~~~~~-----~~~~l~~~l~~~g~~~~~i~g 71 (138)
+.+...+..-+++++.+..+=+++-++++..+ .++.+...+++.|++.....-
T Consensus 139 vsD~~~v~q~i~lik~~~Pnak~Igv~Y~p~E~ns~~l~eelk~~A~~~Gl~vve~~v 196 (322)
T COG2984 139 VSDLLPVAQQIELIKALLPNAKSIGVLYNPGEANSVSLVEELKKEARKAGLEVVEAAV 196 (322)
T ss_pred cCCcchHHHHHHHHHHhCCCCeeEEEEeCCCCcccHHHHHHHHHHHHHCCCEEEEEec
Confidence 44556788889999988887778856665443 478888888999999776655
No 452
>KOG0340|consensus
Probab=35.26 E-value=2.1e+02 Score=22.07 Aligned_cols=74 Identities=14% Similarity=0.100 Sum_probs=48.1
Q ss_pred CchHH-HHHHHHHHhhhC--CCeEEEEeccHHHHHHHHHHHhhc----CCeEEEEeCCCChHHHHHHHHHHhcCCCceEE
Q psy2046 22 SGKLK-KLDEILPDLKKN--GHRVLIFSQFIFVLDILGHYMDIR----GWRHLRLDGATQVSSRQELIDEYNRDQDLFAF 94 (138)
Q Consensus 22 s~K~~-~l~~ll~~~~~~--~~k~iif~~~~~~~~~l~~~l~~~----g~~~~~i~g~~~~~~R~~~~~~F~~~~~~~vl 94 (138)
|+|-. ....++..+.+. |--.+||++..+-.-.+++.|... ++++..|.|+++.-.....+ ...+.++
T Consensus 55 sGKT~AFaLPil~rLsedP~giFalvlTPTrELA~QiaEQF~alGk~l~lK~~vivGG~d~i~qa~~L-----~~rPHvV 129 (442)
T KOG0340|consen 55 SGKTAAFALPILNRLSEDPYGIFALVLTPTRELALQIAEQFIALGKLLNLKVSVIVGGTDMIMQAAIL-----SDRPHVV 129 (442)
T ss_pred CCcchhhhHHHHHhhccCCCcceEEEecchHHHHHHHHHHHHHhcccccceEEEEEccHHHhhhhhhc-----ccCCCeE
Confidence 45544 344566665443 457899999999888888888765 56799999998744333322 2344556
Q ss_pred EEeccc
Q psy2046 95 LLSTKA 100 (138)
Q Consensus 95 l~~~~~ 100 (138)
++++.-
T Consensus 130 vatPGR 135 (442)
T KOG0340|consen 130 VATPGR 135 (442)
T ss_pred ecCccc
Confidence 655543
No 453
>cd02931 ER_like_FMN Enoate reductase (ER)-like FMN-binding domain. Enoate reductase catalyzes the NADH-dependent reduction of carbon-carbon double bonds of several molecules, including nonactivated 2-enoates, alpha,beta-unsaturated aldehydes, cyclic ketones, and methylketones. ERs are similar to 2,4-dienoyl-CoA reductase from E. coli and to the old yellow enzyme from Saccharomyces cerevisiae.
Probab=35.23 E-value=1.9e+02 Score=21.96 Aligned_cols=51 Identities=16% Similarity=0.253 Sum_probs=33.8
Q ss_pred chHHHHHHHHHHhhhC-CCeEEEEecc-------------------------HHHHHHHHHHHhhcCCeEEEEeCCC
Q psy2046 23 GKLKKLDEILPDLKKN-GHRVLIFSQF-------------------------IFVLDILGHYMDIRGWRHLRLDGAT 73 (138)
Q Consensus 23 ~K~~~l~~ll~~~~~~-~~k~iif~~~-------------------------~~~~~~l~~~l~~~g~~~~~i~g~~ 73 (138)
.+...+.++++.+.+. ++.+.|.... .+..-.+.+.|.+.|+.++.++++.
T Consensus 199 nR~rf~~eii~~vr~~~g~~f~v~vri~~~~~~~~~~~~~~~~~~~~~~g~~~e~~~~~~~~l~~~gvD~l~vs~g~ 275 (382)
T cd02931 199 NRLRFAIEIVEEIKARCGEDFPVSLRYSVKSYIKDLRQGALPGEEFQEKGRDLEEGLKAAKILEEAGYDALDVDAGS 275 (382)
T ss_pred HHhHHHHHHHHHHHHhcCCCceEEEEEechhhccccccccccccccccCCCCHHHHHHHHHHHHHhCCCEEEeCCCC
Confidence 4677788888887654 4444444321 2344567788888899999998765
No 454
>cd01446 DSP_MapKP N-terminal regulatory rhodanese domain of dual specificity phosphatases (DSP), such as Mapk Phosphatase. This domain is believed to determine substrate specificity by binding the substrate, such as ERK2, and activating the C-terminal catalytic domain by inducing a conformational change. This domain has homology to the Rhodanese Homology Domain.
Probab=35.12 E-value=1.1e+02 Score=18.88 Aligned_cols=36 Identities=11% Similarity=0.050 Sum_probs=23.6
Q ss_pred CCCeEEEEeccHHH---------HHHHHHHHhh---cCCeEEEEeCCC
Q psy2046 38 NGHRVLIFSQFIFV---------LDILGHYMDI---RGWRHLRLDGAT 73 (138)
Q Consensus 38 ~~~k~iif~~~~~~---------~~~l~~~l~~---~g~~~~~i~g~~ 73 (138)
....+|||+..... +..+...|.. .+.++..+.|+.
T Consensus 74 ~~~~VVvYd~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~v~~L~GG~ 121 (132)
T cd01446 74 ESLAVVVYDESSSDRERLREDSTAESVLGKLLRKLQEGCSVYLLKGGF 121 (132)
T ss_pred CCCeEEEEeCCCcchhhccccchHHHHHHHHHHhcCCCceEEEEcchH
Confidence 35678888876553 5566666665 345677777775
No 455
>PLN02654 acetate-CoA ligase
Probab=34.94 E-value=2.5e+02 Score=22.86 Aligned_cols=69 Identities=19% Similarity=0.149 Sum_probs=42.0
Q ss_pred HHHHHHHHHHh-hhCCCeEEEEeccHHHHHHHHHHHhhcCCeEEEEeCCCChHHHHHHHHHHhcCCCceEEEEe
Q psy2046 25 LKKLDEILPDL-KKNGHRVLIFSQFIFVLDILGHYMDIRGWRHLRLDGATQVSSRQELIDEYNRDQDLFAFLLS 97 (138)
Q Consensus 25 ~~~l~~ll~~~-~~~~~k~iif~~~~~~~~~l~~~l~~~g~~~~~i~g~~~~~~R~~~~~~F~~~~~~~vll~~ 97 (138)
...+...|..+ .+.|++|.|+....-..-...-.+-+.|.-++.++.+.+.++-...++.. .+++++++
T Consensus 130 v~~lA~~L~~~Gv~~GdrV~i~~pn~~e~v~a~lA~~~~Gav~vpv~~~~~~~~l~~~l~~~----~~~~li~~ 199 (666)
T PLN02654 130 VCQLANYLKDVGVKKGDAVVIYLPMLMELPIAMLACARIGAVHSVVFAGFSAESLAQRIVDC----KPKVVITC 199 (666)
T ss_pred HHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHHcCCEEEecCCCCCHHHHHHHHHhc----CceEEEEc
Confidence 44444445443 35688999998765433333333345677888899888877666666654 33445544
No 456
>PF03198 Glyco_hydro_72: Glucanosyltransferase; InterPro: IPR004886 This family is a group of yeast glycolipid proteins anchored to the membrane. It includes Candida albicans (Yeast) pH-regulated protein, which is required for apical growth and plays a role in morphogenesis and Saccharomyces cerevisiae glycolipid anchored surface protein.; PDB: 2W61_A 2W62_A 2W63_A.
Probab=34.86 E-value=1.5e+02 Score=22.07 Aligned_cols=65 Identities=12% Similarity=0.134 Sum_probs=33.4
Q ss_pred HHHHHHHHhhcCCeEEEEeCCCChHHHHHHHHHHhcCCCceEEEEeccccccccCcCccCEEEEeCC--CCCccchh
Q psy2046 52 LDILGHYMDIRGWRHLRLDGATQVSSRQELIDEYNRDQDLFAFLLSTKAGGLGINLTAADTVIIHDV--DFNPYNDK 126 (138)
Q Consensus 52 ~~~l~~~l~~~g~~~~~i~g~~~~~~R~~~~~~F~~~~~~~vll~~~~~~~~Gl~l~~~~~vi~~~~--~~~~~~~~ 126 (138)
+..=...|++.|++.+.++.=.+...=.+.++.|.+.. +. +++....-...|+-. +| .|+...+.
T Consensus 55 C~rDi~~l~~LgiNtIRVY~vdp~~nHd~CM~~~~~aG-IY-vi~Dl~~p~~sI~r~--------~P~~sw~~~l~~ 121 (314)
T PF03198_consen 55 CKRDIPLLKELGINTIRVYSVDPSKNHDECMSAFADAG-IY-VILDLNTPNGSINRS--------DPAPSWNTDLLD 121 (314)
T ss_dssp HHHHHHHHHHHT-SEEEES---TTS--HHHHHHHHHTT--E-EEEES-BTTBS--TT--------S------HHHHH
T ss_pred HHHhHHHHHHcCCCEEEEEEeCCCCCHHHHHHHHHhCC-CE-EEEecCCCCccccCC--------CCcCCCCHHHHH
Confidence 44444678889999999998777777888999998764 33 444444433333332 44 67765443
No 457
>cd02407 PTH2_family Peptidyl-tRNA hydrolase, type 2 (PTH2)_like . Peptidyl-tRNA hydrolase activity releases tRNA from the premature translation termination product peptidyl-tRNA. Two structurally different enzymes have been reported to encode such activity, Pth present in bacteria and eukaryotes and Pth2 present in archaea and eukaryotes.
Probab=34.81 E-value=1.1e+02 Score=18.92 Aligned_cols=38 Identities=16% Similarity=0.053 Sum_probs=26.7
Q ss_pred HHhhhCC-CeEEEEeccHHHHHHHHHHHhhcCCeEEEEe
Q psy2046 33 PDLKKNG-HRVLIFSQFIFVLDILGHYMDIRGWRHLRLD 70 (138)
Q Consensus 33 ~~~~~~~-~k~iif~~~~~~~~~l~~~l~~~g~~~~~i~ 70 (138)
..+...| .|+++-++..+.+..|.+.++..|+++..+.
T Consensus 42 ~~W~~~g~~KvVl~v~~~~~l~~l~~~a~~~gl~~~~v~ 80 (115)
T cd02407 42 RAWELEGQKKVVLKVPSEEELLELAKKAKELGLPHSLIQ 80 (115)
T ss_pred HHHHhCCCcEEEEECCCHHHHHHHHHHHHHcCCCeEEEE
Confidence 3344445 4777777777788889988888888855443
No 458
>PRK08734 lipid A biosynthesis lauroyl acyltransferase; Provisional
Probab=34.67 E-value=1.8e+02 Score=21.17 Aligned_cols=57 Identities=7% Similarity=0.092 Sum_probs=34.2
Q ss_pred HHHHhhhCCCeEEEEeccHHHHHHHHHHHhhcCCeEEEEeCCCChHHHHHHHHHHhcC
Q psy2046 31 ILPDLKKNGHRVLIFSQFIFVLDILGHYMDIRGWRHLRLDGATQVSSRQELIDEYNRD 88 (138)
Q Consensus 31 ll~~~~~~~~k~iif~~~~~~~~~l~~~l~~~g~~~~~i~g~~~~~~R~~~~~~F~~~ 88 (138)
.+.+...+++.+|+.+.+-...+.....+... .+...++-......-.+.+.+.+..
T Consensus 104 ~l~~~~~~gkgvI~lt~H~GnwE~~~~~~~~~-~~~~~vyr~~~n~~~d~~~~~~R~~ 160 (305)
T PRK08734 104 LYDAALASGRGVIVAAPHFGNWELLNQWLSER-GPIAIVYRPPESEAVDGFLQLVRGG 160 (305)
T ss_pred HHHHHHHcCCCEEEEccccchHHHHHHHHHcc-CCceEEEeCCCCHHHHHHHHHHhcc
Confidence 34444556778888888877777776666543 3544455555444444555555543
No 459
>TIGR02991 ectoine_eutB ectoine utilization protein EutB. Members of this protein family are EutB, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti, Silicibacter pomeroyi, Agrobacterium tumefaciens, and Pseudomonas putida. Members of this family resemble threonine dehydratases.
Probab=34.63 E-value=1.9e+02 Score=21.29 Aligned_cols=66 Identities=12% Similarity=-0.056 Sum_probs=48.1
Q ss_pred ccCchHHHHHHHHHHhh-hCCCeEEEEeccHHHHHHHHHHHhhcCCeEEEEeCCCChHHHHHHHHHH
Q psy2046 20 VESGKLKKLDEILPDLK-KNGHRVLIFSQFIFVLDILGHYMDIRGWRHLRLDGATQVSSRQELIDEY 85 (138)
Q Consensus 20 ~~s~K~~~l~~ll~~~~-~~~~k~iif~~~~~~~~~l~~~l~~~g~~~~~i~g~~~~~~R~~~~~~F 85 (138)
.-|-|.+....++..+. ..+.+.||=+.+-+....++-+-...|+++..+-.......+.+.++.|
T Consensus 46 tGS~K~R~a~~~i~~~~~~~~~~~vv~aSsGN~g~alA~~a~~~G~~~~v~~p~~~~~~k~~~~~~~ 112 (317)
T TIGR02991 46 TGSFKLRGATNAVLSLSDTQRAAGVVAASTGNHGRALAYAAAEEGVRATICMSELVPQNKVDEIRRL 112 (317)
T ss_pred CCCcHHHHHHHHHHhhhHhccCCeEEEECCCHHHHHHHHHHHHhCCCEEEEcCCCCCHHHHHHHHHc
Confidence 45678888887776643 2233445555566777888888888899988887777667788888887
No 460
>COG1922 WecG Teichoic acid biosynthesis proteins [Cell envelope biogenesis, outer membrane]
Probab=34.51 E-value=1.8e+02 Score=20.99 Aligned_cols=72 Identities=11% Similarity=0.188 Sum_probs=50.4
Q ss_pred HHHHHHHHHHhhhCCCeEEEEeccHHHHHHHHHHHhhc--CCeEEEEe-CCCChHHHHHHHHHHhcCCCceEEEEe
Q psy2046 25 LKKLDEILPDLKKNGHRVLIFSQFIFVLDILGHYMDIR--GWRHLRLD-GATQVSSRQELIDEYNRDQDLFAFLLS 97 (138)
Q Consensus 25 ~~~l~~ll~~~~~~~~k~iif~~~~~~~~~l~~~l~~~--g~~~~~i~-g~~~~~~R~~~~~~F~~~~~~~vll~~ 97 (138)
.+....++....+++.++-++-..+..++..+..|.+. +..++..| |=-++++.+.++++-+.. .+.+|++.
T Consensus 94 ~Dl~~~Ll~~a~~~~~~vfllGgkp~V~~~a~~~l~~~~p~l~ivg~h~GYf~~~e~~~i~~~I~~s-~pdil~Vg 168 (253)
T COG1922 94 TDLVEALLKRAAEEGKRVFLLGGKPGVAEQAAAKLRAKYPGLKIVGSHDGYFDPEEEEAIVERIAAS-GPDILLVG 168 (253)
T ss_pred HHHHHHHHHHhCccCceEEEecCCHHHHHHHHHHHHHHCCCceEEEecCCCCChhhHHHHHHHHHhc-CCCEEEEe
Confidence 44455566655566788888888899999999998876 45666666 766777778888888755 33455553
No 461
>PLN02556 cysteine synthase/L-3-cyanoalanine synthase
Probab=34.41 E-value=2e+02 Score=21.72 Aligned_cols=65 Identities=14% Similarity=0.083 Sum_probs=50.9
Q ss_pred cCchHHHHHHHHHHhhhCC-----CeEEEEeccHHHHHHHHHHHhhcCCeEEEEeCCCChHHHHHHHHHH
Q psy2046 21 ESGKLKKLDEILPDLKKNG-----HRVLIFSQFIFVLDILGHYMDIRGWRHLRLDGATQVSSRQELIDEY 85 (138)
Q Consensus 21 ~s~K~~~l~~ll~~~~~~~-----~k~iif~~~~~~~~~l~~~l~~~g~~~~~i~g~~~~~~R~~~~~~F 85 (138)
-|-|.+....++.+..+.+ ...||-+..-+..-.++-+-...|+++..+-......+|...++.|
T Consensus 87 GS~KdR~A~~~l~~a~~~G~i~pG~~~vV~aSsGN~G~alA~~a~~~G~~~~ivvp~~~~~~k~~~lr~~ 156 (368)
T PLN02556 87 SSIKDRPALAMIEDAEKKNLITPGKTTLIEPTSGNMGISLAFMAAMKGYKMILTMPSYTSLERRVTMRAF 156 (368)
T ss_pred cchHHHHHHHHHHHHHHcCCcCCCCCEEEEeCCchHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHHc
Confidence 4789999888888776654 3456666677778888888888899988887766667888999988
No 462
>PRK08419 lipid A biosynthesis lauroyl acyltransferase; Reviewed
Probab=34.26 E-value=1.8e+02 Score=21.00 Aligned_cols=41 Identities=7% Similarity=-0.044 Sum_probs=25.8
Q ss_pred HHHhhhCCCeEEEEeccHHHHHHHHHHHhhcCCeEEEEeCC
Q psy2046 32 LPDLKKNGHRVLIFSQFIFVLDILGHYMDIRGWRHLRLDGA 72 (138)
Q Consensus 32 l~~~~~~~~k~iif~~~~~~~~~l~~~l~~~g~~~~~i~g~ 72 (138)
+.....+++.+|+.+.+-...+.....+...+.+...+.-.
T Consensus 105 l~~a~~~g~gvI~~t~H~GnwE~~~~~l~~~~~~~~~v~~~ 145 (298)
T PRK08419 105 LLDALKKKRPIIVTTAHYGYWELFSLALAAYYGAVSIVGRL 145 (298)
T ss_pred HHHHHHcCCCEEEEeeCccHHHHHHHHHHhcCCCeEEEEeC
Confidence 43344567788888888877777776666554444444333
No 463
>PRK08762 molybdopterin biosynthesis protein MoeB; Validated
Probab=34.22 E-value=1.1e+02 Score=23.00 Aligned_cols=36 Identities=6% Similarity=0.042 Sum_probs=26.3
Q ss_pred hCCCeEEEEeccHHHHHHHHHHHhhcCCe-EEEEeCC
Q psy2046 37 KNGHRVLIFSQFIFVLDILGHYMDIRGWR-HLRLDGA 72 (138)
Q Consensus 37 ~~~~k~iif~~~~~~~~~l~~~l~~~g~~-~~~i~g~ 72 (138)
..++.+++||+.-.........|+..|++ +..+.|+
T Consensus 55 ~~~~~IvvyC~~G~rs~~aa~~L~~~G~~~v~~l~GG 91 (376)
T PRK08762 55 DRDREIVLICASGTRSAHAAATLRELGYTRVASVAGG 91 (376)
T ss_pred CCCCeEEEEcCCCcHHHHHHHHHHHcCCCceEeecCc
Confidence 45678999998766566677788888885 5566665
No 464
>COG0149 TpiA Triosephosphate isomerase [Carbohydrate transport and metabolism]
Probab=34.17 E-value=27 Score=24.96 Aligned_cols=80 Identities=13% Similarity=0.012 Sum_probs=43.1
Q ss_pred eEEEEeccHHH-------HHHHHHHHhhcCCeEEEE--------eCCCChHHHHHHHHHHhcCCCceEEEEecc------
Q psy2046 41 RVLIFSQFIFV-------LDILGHYMDIRGWRHLRL--------DGATQVSSRQELIDEYNRDQDLFAFLLSTK------ 99 (138)
Q Consensus 41 k~iif~~~~~~-------~~~l~~~l~~~g~~~~~i--------~g~~~~~~R~~~~~~F~~~~~~~vll~~~~------ 99 (138)
++.++.+.... -+.-..+|+..|..++.+ ++.++..-..+.-..++.+=.+-+++.-+.
T Consensus 59 ~i~~gAQn~~~~~~GA~TGeiS~~mL~d~G~~~viiGHSERR~~~~E~d~~i~~K~~aa~~~Gl~pIlCvGEtl~~reag 138 (251)
T COG0149 59 NIKVGAQNVDPEDSGAFTGEISAEMLKDLGAKYVLIGHSERRLYFGETDELIAKKVKAAKEAGLTPILCVGETLEEREAG 138 (251)
T ss_pred CceEEeccCCcccCCCccCcCCHHHHHHcCCCEEEECccccccccccchHHHHHHHHHHHHCCCeEEEEcCCCHHHHhcc
Confidence 77777776643 345667777778776543 333333333444444545433311221221
Q ss_pred -----------ccccccCcCccCEEEEeCCCCC
Q psy2046 100 -----------AGGLGINLTAADTVIIHDVDFN 121 (138)
Q Consensus 100 -----------~~~~Gl~l~~~~~vi~~~~~~~ 121 (138)
.+-.+++.. .+.+|-|+|+|-
T Consensus 139 ~t~~v~~~Ql~~~l~~l~~~-~~~vIAYEPvWA 170 (251)
T COG0149 139 KTLEVLKRQLAAALAALSPE-ANIVIAYEPVWA 170 (251)
T ss_pred ChHHHHHHHHHHHHhhcCcc-cCeEEEECCHHH
Confidence 222344433 678899999993
No 465
>PRK13111 trpA tryptophan synthase subunit alpha; Provisional
Probab=34.04 E-value=1.8e+02 Score=20.88 Aligned_cols=32 Identities=19% Similarity=0.085 Sum_probs=16.9
Q ss_pred HHHHHHhhcCCeEEEEeCCCChHHHHHHHHHH
Q psy2046 54 ILGHYMDIRGWRHLRLDGATQVSSRQELIDEY 85 (138)
Q Consensus 54 ~l~~~l~~~g~~~~~i~g~~~~~~R~~~~~~F 85 (138)
.+.+.+++.|+..+.+-...+..+|.+.+.+-
T Consensus 133 ~~~~~~~~~gl~~I~lvap~t~~eri~~i~~~ 164 (258)
T PRK13111 133 ELRAAAKKHGLDLIFLVAPTTTDERLKKIASH 164 (258)
T ss_pred HHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHh
Confidence 34444445555555555555555555555554
No 466
>PRK08706 lipid A biosynthesis lauroyl acyltransferase; Provisional
Probab=34.00 E-value=1.8e+02 Score=20.91 Aligned_cols=57 Identities=12% Similarity=0.093 Sum_probs=37.7
Q ss_pred HHHHhhhCCCeEEEEeccHHHHHHHHHHHhhcCCeEEEEeCCCChHHHHHHHHHHhcC
Q psy2046 31 ILPDLKKNGHRVLIFSQFIFVLDILGHYMDIRGWRHLRLDGATQVSSRQELIDEYNRD 88 (138)
Q Consensus 31 ll~~~~~~~~k~iif~~~~~~~~~l~~~l~~~g~~~~~i~g~~~~~~R~~~~~~F~~~ 88 (138)
.+.+...+++.+|+++.+-...+.....+... .+...+.-......-.+.+.+++..
T Consensus 97 ~l~~~~~~gkgvI~~t~H~GnWEl~~~~~~~~-~~~~~i~r~~~n~~~d~~~~~~R~~ 153 (289)
T PRK08706 97 YLDDALAAGEKVIILYPHFTAFEMAVYALNQD-VPLISMYSHQKNKILDEQILKGRNR 153 (289)
T ss_pred HHHHHHhCCCCEEEEecchhHHHHHHHHHHcc-CCCcEEeeCCCCHHHHHHHHHHHhc
Confidence 34444556788999998888877776666543 4555666666656666666666654
No 467
>PRK08811 uroporphyrinogen-III synthase; Validated
Probab=33.96 E-value=90 Score=22.33 Aligned_cols=63 Identities=17% Similarity=0.112 Sum_probs=34.7
Q ss_pred CCCeEEEEeccHHHHHHHHHHHhhcCCeEEE--EeCCCChHHHHHHHHHHhcCCCceEEEEecccc
Q psy2046 38 NGHRVLIFSQFIFVLDILGHYMDIRGWRHLR--LDGATQVSSRQELIDEYNRDQDLFAFLLSTKAG 101 (138)
Q Consensus 38 ~~~k~iif~~~~~~~~~l~~~l~~~g~~~~~--i~g~~~~~~R~~~~~~F~~~~~~~vll~~~~~~ 101 (138)
.+++++++... ..-+.|.+.|.+.|..+.. +|-..........+..+.......++++++..+
T Consensus 137 ~g~~vLi~rg~-~gr~~L~~~L~~~G~~V~~~~vY~~~~~~~~~~~~~~l~~~~~~d~i~ftS~sa 201 (266)
T PRK08811 137 PLQAVGLITAP-GGRGLLAPTLQQRGARILRADVYQRVPLRLRASTLAALSRAAPRSVLALSSAEA 201 (266)
T ss_pred CCCEEEEEeCC-CcHHHHHHHHHHCCCEEeEEEEEeeeCCCCCHHHHHHHHHhCCCCEEEEChHHH
Confidence 56788877765 4458999999999877533 333332222223444442222334455554443
No 468
>PF12088 DUF3565: Protein of unknown function (DUF3565); InterPro: IPR021948 This family of proteins is functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 30 to 78 amino acids in length. This protein has two conserved sequence motifs: WVA and CGH.
Probab=33.96 E-value=30 Score=18.92 Aligned_cols=22 Identities=32% Similarity=0.278 Sum_probs=15.5
Q ss_pred eCCCC-CccchhHHHHHHhhcCC
Q psy2046 116 HDVDF-NPYNDKQAEDRCHRVGQ 137 (138)
Q Consensus 116 ~~~~~-~~~~~~Q~~gR~~R~GQ 137 (138)
-+||| |...-.-..||..++|+
T Consensus 25 H~PPw~~RpWV~t~~gR~~~lG~ 47 (61)
T PF12088_consen 25 HDPPWQNRPWVLTEEGRQSMLGQ 47 (61)
T ss_pred CCCCCcccCcEEcHHHHHHhcCC
Confidence 47787 44445567888888886
No 469
>PRK10517 magnesium-transporting ATPase MgtA; Provisional
Probab=33.95 E-value=3.1e+02 Score=23.66 Aligned_cols=19 Identities=5% Similarity=0.183 Sum_probs=14.6
Q ss_pred CCCChHHHHHHHHHHhcCC
Q psy2046 71 GATQVSSRQELIDEYNRDQ 89 (138)
Q Consensus 71 g~~~~~~R~~~~~~F~~~~ 89 (138)
++++++++.++++.++...
T Consensus 619 Ar~sPe~K~~IV~~Lq~~G 637 (902)
T PRK10517 619 ARLTPMHKERIVTLLKREG 637 (902)
T ss_pred EEcCHHHHHHHHHHHHHCC
Confidence 3467788999999998653
No 470
>COG0021 TktA Transketolase [Carbohydrate transport and metabolism]
Probab=33.74 E-value=1.9e+02 Score=23.91 Aligned_cols=65 Identities=12% Similarity=0.254 Sum_probs=45.9
Q ss_pred eEEEEeccHH----------HHHHHHHHHhhcCCeEE-EEeCCCChHHHHHHHHHHhcCC-CceEEEEeccccccccCc
Q psy2046 41 RVLIFSQFIF----------VLDILGHYMDIRGWRHL-RLDGATQVSSRQELIDEYNRDQ-DLFAFLLSTKAGGLGINL 107 (138)
Q Consensus 41 k~iif~~~~~----------~~~~l~~~l~~~g~~~~-~i~g~~~~~~R~~~~~~F~~~~-~~~vll~~~~~~~~Gl~l 107 (138)
|.|+|.++.. +.+.+...++..|+.+. .++|. +.++-.+.+++-+... .+. +|++-.+.|.|-..
T Consensus 179 kLIvlyD~N~IsiDG~~~~~f~ed~~~RfeAyGW~vi~~~DG~-D~e~I~~Ai~~Ak~~~dkPt-lI~~kTiIG~Gsp~ 255 (663)
T COG0021 179 KLIVLYDSNDISIDGDTSLSFTEDVAKRFEAYGWNVIRVIDGH-DLEAIDKAIEEAKASTDKPT-LIIVKTIIGKGSPN 255 (663)
T ss_pred cEEEEEeCCCceeccCcccccchhHHHHHHhcCCeEEEecCCC-CHHHHHHHHHHHHhcCCCCe-EEEEEeeeecCCCC
Confidence 7777776653 25678888888999998 66665 6788888888877533 443 55555667777766
No 471
>PF04723 GRDA: Glycine reductase complex selenoprotein A; InterPro: IPR006812 Found in clostridia, this protein contains one active site selenocysteine and catalyses the reductive deamination of glycine, which is coupled to the esterification of orthophosphate resulting in the formation of ATP []. A member of this family may also exist in Treponema denticola [].; GO: 0030699 glycine reductase activity, 0050485 oxidoreductase activity, acting on X-H and Y-H to form an X-Y bond, with a disulfide as acceptor, 0055114 oxidation-reduction process, 0030700 glycine reductase complex
Probab=33.73 E-value=1.4e+02 Score=19.47 Aligned_cols=79 Identities=23% Similarity=0.344 Sum_probs=45.2
Q ss_pred CCCeEEEEeccHHH-HHHHHHHHhhcCCeEE---------EEeCCCChHHHHH---HHHHHhcCCCceEEEEeccccccc
Q psy2046 38 NGHRVLIFSQFIFV-LDILGHYMDIRGWRHL---------RLDGATQVSSRQE---LIDEYNRDQDLFAFLLSTKAGGLG 104 (138)
Q Consensus 38 ~~~k~iif~~~~~~-~~~l~~~l~~~g~~~~---------~i~g~~~~~~R~~---~~~~F~~~~~~~vll~~~~~~~~G 104 (138)
+++|+||.-..... ..+++..++..|-.++ .--|.|..+...+ ..++|. .++..|+|.+.++-+.|
T Consensus 4 ~gkKviiiGdRDGiPgpAie~c~~~~gaevvfs~TeCFVctaagaMDLEnQ~rvk~~aEk~g-~enlvVvlG~aeaE~a~ 82 (150)
T PF04723_consen 4 EGKKVIIIGDRDGIPGPAIEECVKTAGAEVVFSSTECFVCTAAGAMDLENQQRVKDLAEKYG-AENLVVVLGAAEAEAAG 82 (150)
T ss_pred CCcEEEEEecCCCCCcHHHHHHHHhcCceEEEEeeeEEEecccccccHHHHHHHHHHHHhcC-CccEEEEecCCChhhhh
Confidence 46788888776543 4567777777664322 2346676554433 334443 34555677777665555
Q ss_pred cCcCccCEEEEeCCCC
Q psy2046 105 INLTAADTVIIHDVDF 120 (138)
Q Consensus 105 l~l~~~~~vi~~~~~~ 120 (138)
|- |.+|-+-||+|
T Consensus 83 la---AETVt~GDPTf 95 (150)
T PF04723_consen 83 LA---AETVTNGDPTF 95 (150)
T ss_pred hh---hhhhccCCCcc
Confidence 53 55555555554
No 472
>PF00782 DSPc: Dual specificity phosphatase, catalytic domain; InterPro: IPR000340 Protein tyrosine (pTyr) phosphorylation is a common post-translational modification which can create novel recognition motifs for protein interactions and cellular localisation, affect protein stability, and regulate enzyme activity. Consequently, maintaining an appropriate level of protein tyrosine phosphorylation is essential for many cellular functions. Tyrosine-specific protein phosphatases (PTPase; 3.1.3.48 from EC) catalyse the removal of a phosphate group attached to a tyrosine residue, using a cysteinyl-phosphate enzyme intermediate. These enzymes are key regulatory components in signal transduction pathways (such as the MAP kinase pathway) and cell cycle control, and are important in the control of cell growth, proliferation, differentiation and transformation [, ]. The PTP superfamily can be divided into four subfamilies []: (1) pTyr-specific phosphatases (2) dual specificity phosphatases (dTyr and dSer/dThr) (3) Cdc25 phosphatases (dTyr and/or dThr) (4) LMW (low molecular weight) phosphatases Based on their cellular localisation, PTPases are also classified as: Receptor-like, which are transmembrane receptors that contain PTPase domains [] Non-receptor (intracellular) PTPases [] All PTPases carry the highly conserved active site motif C(X)5R (PTP signature motif), employ a common catalytic mechanism, and share a similar core structure made of a central parallel beta-sheet with flanking alpha-helices containing a beta-loop-alpha-loop that encompasses the PTP signature motif []. Functional diversity between PTPases is endowed by regulatory domains and subunits. This entry represents dual specificity protein-tyrosine phosphatases. Ser/Thr and Tyr dual specificity phosphatases are a group of enzymes with both Ser/Thr (3.1.3.16 from EC) and tyrosine specific protein phosphatase (3.1.3.48 from EC) activity able to remove both the serine/threonine or tyrosine-bound phosphate group from a wide range of phosphoproteins, including a number of enzymes which have been phosphorylated under the action of a kinase. Dual specificity protein phosphatases (DSPs) regulate mitogenic signal transduction and control the cell cycle. The crystal structure of a human DSP, vaccinia H1-related phosphatase (or VHR), has been determined at 2.1 angstrom resolution []. A shallow active site pocket in VHR allows for the hydrolysis of phosphorylated serine, threonine, or tyrosine protein residues, whereas the deeper active site of protein tyrosine phosphatases (PTPs) restricts substrate specificity to only phosphotyrosine. Positively charged crevices near the active site may explain the enzyme's preference for substrates with two phosphorylated residues. The VHR structure defines a conserved structural scaffold for both DSPs and PTPs. A "recognition region" connecting helix alpha1 to strand beta1, may determine differences in substrate specificity between VHR, the PTPs, and other DSPs. These proteins may also have inactive phosphatase domains, and dependent on the domain composition this loss of catalytic activity has different effects on protein function. Inactive single domain phosphatases can still specifically bind substrates, and protect again dephosphorylation, while the inactive domains of tandem phosphatases can be further subdivided into two classes. Those which bind phosphorylated tyrosine residues may recruit multi-phosphorylated substrates for the adjacent active domains and are more conserved, while the other class have accumulated several variable amino acid substitutions and have a complete loss of tyrosine binding capability. The second class shows a release of evolutionary constraint for the sites around the catalytic centre, which emphasises a difference in function from the first group. There is a region of higher conservation common to both classes, suggesting a new regulatory centre [].; GO: 0008138 protein tyrosine/serine/threonine phosphatase activity, 0006470 protein dephosphorylation; PDB: 2G6Z_A 1MKP_A 1YZ4_A 2P4D_A 1M3G_A 1ZZW_A 2OUD_A 2HXP_A 3LJ8_A 1OHD_A ....
Probab=33.70 E-value=85 Score=19.27 Aligned_cols=38 Identities=16% Similarity=0.202 Sum_probs=27.0
Q ss_pred CchHHHHHHHHHHhhhCCCeEEEEeccH--HHHHHHHHHH
Q psy2046 22 SGKLKKLDEILPDLKKNGHRVLIFSQFI--FVLDILGHYM 59 (138)
Q Consensus 22 s~K~~~l~~ll~~~~~~~~k~iif~~~~--~~~~~l~~~l 59 (138)
...+..+.+++.....++.+++|.|..- ...-.+..+|
T Consensus 56 ~~~~~~~~~~i~~~~~~~~~VlVHC~~G~~RS~~v~~ayL 95 (133)
T PF00782_consen 56 LEHLDQAVEFIENAISEGGKVLVHCKAGLSRSGAVAAAYL 95 (133)
T ss_dssp GGGHHHHHHHHHHHHHTTSEEEEEESSSSSHHHHHHHHHH
T ss_pred HHHHHHHHHhhhhhhcccceeEEEeCCCcccchHHHHHHH
Confidence 4567788888888778889999999763 3334444544
No 473
>COG1587 HemD Uroporphyrinogen-III synthase [Coenzyme metabolism]
Probab=33.48 E-value=1.7e+02 Score=20.52 Aligned_cols=77 Identities=25% Similarity=0.226 Sum_probs=43.7
Q ss_pred chHHHHHHHHHHhhhCCCeEEEEeccHHHHHHHHHHHhhcCCeEEE---EeCCCChHHHHHHHHHHhcCCCceEEEEecc
Q psy2046 23 GKLKKLDEILPDLKKNGHRVLIFSQFIFVLDILGHYMDIRGWRHLR---LDGATQVSSRQELIDEYNRDQDLFAFLLSTK 99 (138)
Q Consensus 23 ~K~~~l~~ll~~~~~~~~k~iif~~~~~~~~~l~~~l~~~g~~~~~---i~g~~~~~~R~~~~~~F~~~~~~~vll~~~~ 99 (138)
..-..+...+......++++++.... ...+.+.+.|...|+.+.. |...............++.++...+++.|+.
T Consensus 107 ~~~~~l~~~l~~~~~~~~~vl~~~~~-~~r~~l~~~L~~~G~~v~~~~~Y~~~~~~~~~~~~~~~~~~~~~d~v~ftS~~ 185 (248)
T COG1587 107 GDSEGLLEELPELLKGGKRVLILRGN-GGREVLEEKLEERGAEVREVEVYRTEPPPLDEATLIELLKLGEVDAVVFTSSS 185 (248)
T ss_pred cchHHHHHHhhhhccCCCeEEEEcCC-CchHHHHHHHHhCCCEEEEEeeeeecCCCccHHHHHHHHHhCCCCEEEEeCHH
Confidence 34455566665544446677777665 4458999999999887543 3332222233444556666655444554443
Q ss_pred c
Q psy2046 100 A 100 (138)
Q Consensus 100 ~ 100 (138)
.
T Consensus 186 ~ 186 (248)
T COG1587 186 A 186 (248)
T ss_pred H
Confidence 3
No 474
>COG1658 Small primase-like proteins (Toprim domain) [DNA replication, recombination, and repair]
Probab=33.35 E-value=50 Score=21.03 Aligned_cols=35 Identities=9% Similarity=-0.010 Sum_probs=23.4
Q ss_pred HHHHHHHHHhhhCCCeEEEEeccHHHHHHHHHHHhh
Q psy2046 26 KKLDEILPDLKKNGHRVLIFSQFIFVLDILGHYMDI 61 (138)
Q Consensus 26 ~~l~~ll~~~~~~~~k~iif~~~~~~~~~l~~~l~~ 61 (138)
....+++... .....||||+++...-+.|...|.+
T Consensus 43 ~~~ie~i~~~-~~~k~VIILTD~D~~Ge~Irk~l~~ 77 (127)
T COG1658 43 LETIELIKKA-QKYKGVIILTDPDRKGERIRKKLKE 77 (127)
T ss_pred HHHHHHHHHh-hccCCEEEEeCCCcchHHHHHHHHH
Confidence 3444455432 2355799999999888888777765
No 475
>PTZ00293 thymidine kinase; Provisional
Probab=33.30 E-value=62 Score=22.52 Aligned_cols=32 Identities=13% Similarity=0.120 Sum_probs=26.0
Q ss_pred cccCchHHHHHHHHHHhhhCCCeEEEEeccHH
Q psy2046 19 VVESGKLKKLDEILPDLKKNGHRVLIFSQFIF 50 (138)
Q Consensus 19 ~~~s~K~~~l~~ll~~~~~~~~k~iif~~~~~ 50 (138)
.+.++|-..|++.+......+.++++|.+...
T Consensus 12 pMfSGKTteLLr~i~~y~~ag~kv~~~kp~~D 43 (211)
T PTZ00293 12 PMFSGKTTELMRLVKRFTYSEKKCVVIKYSKD 43 (211)
T ss_pred CCCChHHHHHHHHHHHHHHcCCceEEEEeccc
Confidence 46789999999999888788889999877443
No 476
>PRK10653 D-ribose transporter subunit RbsB; Provisional
Probab=33.27 E-value=1.8e+02 Score=20.60 Aligned_cols=8 Identities=13% Similarity=0.434 Sum_probs=3.8
Q ss_pred CCCeEEEE
Q psy2046 38 NGHRVLIF 45 (138)
Q Consensus 38 ~~~k~iif 45 (138)
.|-+++++
T Consensus 55 ~G~~~~~~ 62 (295)
T PRK10653 55 LGYNLVVL 62 (295)
T ss_pred cCCeEEEe
Confidence 34455444
No 477
>PHA03371 circ protein; Provisional
Probab=32.74 E-value=28 Score=24.52 Aligned_cols=37 Identities=19% Similarity=0.273 Sum_probs=25.7
Q ss_pred ccccccCcCccCEE-EEeCCCC-------------CccchhHHHHHHhhcC
Q psy2046 100 AGGLGINLTAADTV-IIHDVDF-------------NPYNDKQAEDRCHRVG 136 (138)
Q Consensus 100 ~~~~Gl~l~~~~~v-i~~~~~~-------------~~~~~~Q~~gR~~R~G 136 (138)
.+|+=+|||+.+.+ |+.|.+- +...+.|.|||++=+|
T Consensus 29 LaGR~vDLPgGde~~If~~~g~T~~~~g~f~~~g~~r~~~v~fIGRAya~g 79 (240)
T PHA03371 29 LAGRTVDLPGGDELRIFADCGTTTVNFGKFVRPGSSRLAYVKFIGRAYAIG 79 (240)
T ss_pred hcCcceecCCCCeEEEeccCCCCccceeeEecCCCCcceeeeeeehhhccC
Confidence 46788888888887 6554443 3345668899998766
No 478
>KOG0921|consensus
Probab=32.69 E-value=47 Score=28.66 Aligned_cols=94 Identities=16% Similarity=0.150 Sum_probs=55.2
Q ss_pred CeEEEEeccHHHHHHHHHHHhhc-------CCeEEEEeCCCChHHHHHHHHHHhcCCCceEEEEeccccccccCcCc---
Q psy2046 40 HRVLIFSQFIFVLDILGHYMDIR-------GWRHLRLDGATQVSSRQELIDEYNRDQDLFAFLLSTKAGGLGINLTA--- 109 (138)
Q Consensus 40 ~k~iif~~~~~~~~~l~~~l~~~-------g~~~~~i~g~~~~~~R~~~~~~F~~~~~~~vll~~~~~~~~Gl~l~~--- 109 (138)
.-+++|-.-...+-.|-.+|... .++....|+-....+..++.+....+. .-++.++..+...+.+.+
T Consensus 644 gailvflpgwa~i~~L~~~ll~~~~fg~~~~y~ilp~Hsq~~~~eqrkvf~~~p~gv--~kii~stniaetsiTidd~v~ 721 (1282)
T KOG0921|consen 644 GAVLVFLPGWAEIMTLCNRLLEHQEFGQANKYEILPLHSQLTSQEQRKVFEPVPEGV--TKIILSTNIAETSITIDDVVY 721 (1282)
T ss_pred cceeeecCchHHhhhhhhhhhhhhhhccchhcccccchhhcccHhhhhccCcccccc--cccccccceeeEeeeecceeE
Confidence 56889988888888877777653 234455566555444445544443332 224445555554444433
Q ss_pred --------------cCEEEEeCCCC-CccchhHHHHHHhhc
Q psy2046 110 --------------ADTVIIHDVDF-NPYNDKQAEDRCHRV 135 (138)
Q Consensus 110 --------------~~~vi~~~~~~-~~~~~~Q~~gR~~R~ 135 (138)
.++.+++..-| +....+||-||++|.
T Consensus 722 vid~cka~~~~~~s~nn~~~~Atvw~sktn~eqr~gr~grv 762 (1282)
T KOG0921|consen 722 VIDSCKAKEKLFTSHNNMTHYATVWASKTNLEQRKGRAGRV 762 (1282)
T ss_pred EEeeeeeeeeeeccccceeeeeeecccccchHhhcccCcee
Confidence 33444554555 566788999998764
No 479
>TIGR01511 ATPase-IB1_Cu copper-(or silver)-translocating P-type ATPase. One member from Halobacterium is annotated as "molybdenum-binding protein" although no evidence can be found for this classification.
Probab=32.53 E-value=2.6e+02 Score=22.43 Aligned_cols=59 Identities=14% Similarity=0.167 Sum_probs=37.5
Q ss_pred HHHHHHHHhhhCCCeEEEEeccHHHHHHHHHHHhhcCCeEEEEeCCCChHHHHHHHHHHhcCCC
Q psy2046 27 KLDEILPDLKKNGHRVLIFSQFIFVLDILGHYMDIRGWRHLRLDGATQVSSRQELIDEYNRDQD 90 (138)
Q Consensus 27 ~l~~ll~~~~~~~~k~iif~~~~~~~~~l~~~l~~~g~~~~~i~g~~~~~~R~~~~~~F~~~~~ 90 (138)
...+.++.+.+.|-++.+.+.... ......++..|+. +++...++++.+.+++++..+.
T Consensus 409 ~a~e~i~~Lk~~Gi~v~ilSgd~~--~~a~~ia~~lgi~---~~~~~~p~~K~~~v~~l~~~~~ 467 (562)
T TIGR01511 409 EAKEVIQALKRRGIEPVMLTGDNR--KTAKAVAKELGIN---VRAEVLPDDKAALIKELQEKGR 467 (562)
T ss_pred HHHHHHHHHHHcCCeEEEEcCCCH--HHHHHHHHHcCCc---EEccCChHHHHHHHHHHHHcCC
Confidence 345566666677777766665433 3444444555665 4566677888899999986443
No 480
>PLN02819 lysine-ketoglutarate reductase/saccharopine dehydrogenase
Probab=32.51 E-value=3.5e+02 Score=23.89 Aligned_cols=90 Identities=16% Similarity=0.119 Sum_probs=52.1
Q ss_pred hhCCCeEEEEeccHHHHHHHHHHHhhcCCeEEEEeCCCChHHHH----HHHHHHhcCCCceEEEEeccccccccCcC-cc
Q psy2046 36 KKNGHRVLIFSQFIFVLDILGHYMDIRGWRHLRLDGATQVSSRQ----ELIDEYNRDQDLFAFLLSTKAGGLGINLT-AA 110 (138)
Q Consensus 36 ~~~~~k~iif~~~~~~~~~l~~~l~~~g~~~~~i~g~~~~~~R~----~~~~~F~~~~~~~vll~~~~~~~~Gl~l~-~~ 110 (138)
.+.+..++.-+........+.+..++.|+.+..=+| ..+.-.. +.+++++.. ..++..+...+| ||.-| .+
T Consensus 669 ieaGkHvv~eky~~~e~~~L~e~Ak~AGV~~m~e~G-lDPGid~~lA~~~Id~~~~~-~GkI~s~~s~~G--GLP~pe~~ 744 (1042)
T PLN02819 669 IELKKHLVTASYVSEEMSALDSKAKEAGITILCEMG-LDPGIDHMMAMKMIDDAHER-GGKVKSFTSYCG--GLPSPEAA 744 (1042)
T ss_pred HHcCCCEEECcCCHHHHHHHHHHHHHcCCEEEECCc-cCHHHHHHHHHHHHHhhccc-CCcEEEEEEEEc--CccCcccC
Confidence 445555555554455566677777777887777666 4443222 456666321 123344444555 33332 56
Q ss_pred CEEEEeCCCCCccchhHHH
Q psy2046 111 DTVIIHDVDFNPYNDKQAE 129 (138)
Q Consensus 111 ~~vi~~~~~~~~~~~~Q~~ 129 (138)
++-..|.+.|+|.....+.
T Consensus 745 ~npL~YkfsWSp~gvi~~~ 763 (1042)
T PLN02819 745 NNPLAYKFSWNPAGAIKAG 763 (1042)
T ss_pred CCcccccccCCHHHHHHHh
Confidence 7778899999998655443
No 481
>TIGR03190 benz_CoA_bzdN benzoyl-CoA reductase, bzd-type, N subunit. Members of this family are the N subunit of one of two related types of four-subunit ATP-dependent benzoyl-CoA reductase. This enzyme system catalyzes the dearomatization of benzoyl-CoA, a common intermediate in pathways for the degradation for a number of different aromatic compounds, such as phenol and toluene.
Probab=32.20 E-value=1.4e+02 Score=22.57 Aligned_cols=50 Identities=8% Similarity=0.008 Sum_probs=31.6
Q ss_pred hHHHHHHHHHHhhhCCCeEEEEe----ccH-HHHHHHHHHHhhcCCeEEEEeCCCCh
Q psy2046 24 KLKKLDEILPDLKKNGHRVLIFS----QFI-FVLDILGHYMDIRGWRHLRLDGATQV 75 (138)
Q Consensus 24 K~~~l~~ll~~~~~~~~k~iif~----~~~-~~~~~l~~~l~~~g~~~~~i~g~~~~ 75 (138)
+...+.+++++..-. -||.++ +.- .....+.+.|++.|+++..+.++.+.
T Consensus 301 R~~~i~~lv~~~~~D--GVI~~~~kfC~~~~~e~~~lk~~l~e~GIP~L~iE~D~~~ 355 (377)
T TIGR03190 301 RYDHVLGLAKEYNVQ--GAIFLQQKFCDPHEGDYPDLKRHLEANGIPTLFLEFDITN 355 (377)
T ss_pred HHHHHHHHHHHhCCC--EEEEecccCCCcchhhhHHHHHHHHHCCCCEEEEecCCCC
Confidence 666666666654332 233332 222 22446888898899999999988763
No 482
>PF11823 DUF3343: Protein of unknown function (DUF3343); InterPro: IPR021778 This family of proteins are functionally uncharacterised. This protein is found in bacteria and archaea. Proteins in this family are typically between 78 to 102 amino acids in length.
Probab=32.09 E-value=96 Score=17.22 Aligned_cols=28 Identities=11% Similarity=-0.123 Sum_probs=18.8
Q ss_pred EEEEeccHHHHHHHHHHHhhcCCeEEEE
Q psy2046 42 VLIFSQFIFVLDILGHYMDIRGWRHLRL 69 (138)
Q Consensus 42 ~iif~~~~~~~~~l~~~l~~~g~~~~~i 69 (138)
.+|..++....-..++.|+..|+++..+
T Consensus 4 ~~i~F~st~~a~~~ek~lk~~gi~~~li 31 (73)
T PF11823_consen 4 YLITFPSTHDAMKAEKLLKKNGIPVRLI 31 (73)
T ss_pred EEEEECCHHHHHHHHHHHHHCCCcEEEe
Confidence 3444445666778888899888875544
No 483
>TIGR01663 PNK-3'Pase polynucleotide 5'-kinase 3'-phosphatase. Note that the EC number for the kinase function is: 2.7.1.78
Probab=32.01 E-value=1.4e+02 Score=23.95 Aligned_cols=47 Identities=15% Similarity=0.157 Sum_probs=33.8
Q ss_pred HHHHHHHHhhhCCCeEEEEeccHHH----------HHHHHHHHhhcCCeEEEEeCCC
Q psy2046 27 KLDEILPDLKKNGHRVLIFSQFIFV----------LDILGHYMDIRGWRHLRLDGAT 73 (138)
Q Consensus 27 ~l~~ll~~~~~~~~k~iif~~~~~~----------~~~l~~~l~~~g~~~~~i~g~~ 73 (138)
.+.+.|..+.+.|-+++|+++.... ...+...|+..|+++..+.+..
T Consensus 201 gV~e~L~~L~~~Gy~IvIvTNQ~gI~~G~~~~~~~~~ki~~iL~~lgipfdviia~~ 257 (526)
T TIGR01663 201 EIPEKLKELEADGFKICIFTNQGGIARGKINADDFKAKIEAIVAKLGVPFQVFIAIG 257 (526)
T ss_pred CHHHHHHHHHHCCCEEEEEECCcccccCcccHHHHHHHHHHHHHHcCCceEEEEeCC
Confidence 4566777778889999999986552 1356777788888877776643
No 484
>cd03029 GRX_hybridPRX5 Glutaredoxin (GRX) family, PRX5 hybrid subfamily; composed of hybrid proteins containing peroxiredoxin (PRX) and GRX domains, which is found in some pathogenic bacteria and cyanobacteria. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins. PRX-GRX hybrid proteins from Haemophilus influenza and Neisseria meningitis exhibit GSH-dependent peroxidase activity. The flow of reducing equivalents in the catalytic cycle of the hybrid protein goes from NADPH - GSH reductase - GSH - GRX domain of hybrid - PRX domain of hybrid - peroxide substrate.
Probab=31.69 E-value=92 Score=16.86 Aligned_cols=35 Identities=9% Similarity=-0.061 Sum_probs=24.8
Q ss_pred CeEEEEeccH-HHHHHHHHHHhhcCCeEEEEeCCCC
Q psy2046 40 HRVLIFSQFI-FVLDILGHYMDIRGWRHLRLDGATQ 74 (138)
Q Consensus 40 ~k~iif~~~~-~~~~~l~~~l~~~g~~~~~i~g~~~ 74 (138)
+++++|+... ........+|...|+++..+.=...
T Consensus 1 ~~v~lys~~~Cp~C~~ak~~L~~~~i~~~~~~v~~~ 36 (72)
T cd03029 1 ESVSLFTKPGCPFCARAKAALQENGISYEEIPLGKD 36 (72)
T ss_pred CeEEEEECCCCHHHHHHHHHHHHcCCCcEEEECCCC
Confidence 3567776543 5577888889999999877765443
No 485
>PRK11773 uvrD DNA-dependent helicase II; Provisional
Probab=31.33 E-value=2.4e+02 Score=23.42 Aligned_cols=46 Identities=15% Similarity=0.075 Sum_probs=32.4
Q ss_pred HHHHHHHHHhhhCC---CeEEEEeccHHHHHHHHHHHhhcCCeEEEEeC
Q psy2046 26 KKLDEILPDLKKNG---HRVLIFSQFIFVLDILGHYMDIRGWRHLRLDG 71 (138)
Q Consensus 26 ~~l~~ll~~~~~~~---~k~iif~~~~~~~~~l~~~l~~~g~~~~~i~g 71 (138)
..+.+.|..+...+ ..+.|.+........++..|.+.|+||....|
T Consensus 331 ~~ia~~I~~l~~~g~~~~diAVL~R~~~~~~~le~~L~~~gIPy~~~g~ 379 (721)
T PRK11773 331 RFVVERIKTWQDNGGALSDCAILYRSNAQSRVLEEALLQAGIPYRIYGG 379 (721)
T ss_pred HHHHHHHHHHHHcCCCcccEEEEEecchhHHHHHHHHHHCCCCEEEECC
Confidence 34555555554443 35666666678899999999999999876644
No 486
>PF00697 PRAI: N-(5'phosphoribosyl)anthranilate (PRA) isomerase; InterPro: IPR001240 Indole-3-glycerol phosphate synthase (IGPS) (see IPR001468 from INTERPRO) catalyzes the fourth step in the biosynthesis of tryptophan, the ring closure of 1-(2-carboxy-phenylamino)-1-deoxyribulose into indol-3-glycerol-phosphate. In some bacteria, IGPS is a single chain enzyme. In others, such as Escherichia coli, it is the N-terminal domain of a bifunctional enzyme that also catalyzes N-(5-phosphoribosyl)anthranilate isomerase (PRAI) activity, the third step of tryptophan biosynthesis. In fungi, IGPS is the central domain of a trifunctional enzyme that contains a PRAI C-terminal domain and a glutamine amidotransferase (GATase) N-terminal domain (see IPR000991 from INTERPRO). Phosphoribosylanthranilate isomerase (PRAI) is monomeric and labile in most mesophilic microorganisms, but dimeric and stable in the hyperthermophile Thermotoga maritima (tPRAI) []. The comparison to the known 2.0 A structure of PRAI from Escherichia coli (ePRAI) shows that tPRAI has the complete TIM- or (beta alp ha)8-barrel fold, whereas helix alpha5 in ePRAI is replaced by a loop. The subunits of tPRAI associate via the N-terminal faces of their central beta-barrels. Two long, symmetry-related loops that protrude reciprocally into cavities of the other subunit provide for multiple hydrophobic interactions. Moreover, the side chains of the N-terminal methionines and the C-terminal leucines of both subunits are immobilized in a hydrophobic cluster, and the number of salt bridges is increased in tPRAI. These features appear to be mainly responsible for the high thermostability of tPRAI []. ; GO: 0004640 phosphoribosylanthranilate isomerase activity, 0006568 tryptophan metabolic process; PDB: 1V5X_A 1PII_A 1JCM_P 2KZH_A 1LBM_A 1DL3_A 1NSJ_A.
Probab=31.29 E-value=1.2e+02 Score=20.56 Aligned_cols=35 Identities=14% Similarity=0.118 Sum_probs=25.8
Q ss_pred eEEEEeccHHHHHHHHHHHhhcCCeEEEEeCCCChHH
Q psy2046 41 RVLIFSQFIFVLDILGHYMDIRGWRHLRLDGATQVSS 77 (138)
Q Consensus 41 k~iif~~~~~~~~~l~~~l~~~g~~~~~i~g~~~~~~ 77 (138)
.+.||.+. ..+.+.+.+...++.++.+||..+.+.
T Consensus 51 ~VgVf~~~--~~~~I~~~~~~~~ld~vQLHG~e~~e~ 85 (197)
T PF00697_consen 51 IVGVFVNQ--SPEEILEIVEELGLDVVQLHGDESPEY 85 (197)
T ss_dssp EEEEESSS---HHHHHHHHHHCTESEEEE-SGG-HHH
T ss_pred EEEEEcCC--CHHHHHHHHHHcCCCEEEECCCCCHHH
Confidence 79999974 556777888888899999999885443
No 487
>PF02525 Flavodoxin_2: Flavodoxin-like fold; InterPro: IPR003680 This family consists of a domain with a flavodoxin-like fold. The family includes bacterial and eukaryotic NAD(P)H dehydrogenase (quinone) 1.6.99.2 from EC. These enzymes catalyse the NAD(P)H-dependent two-electron reductions of quinones and protect cells against damage by free radicals and reactive oxygen species []. This enzyme uses a FAD cofactor. The equation for this reaction is NAD(P)H + acceptor = NAD(P)(+) + reduced acceptor. This enzyme is also involved in the bioactivation of prodrugs used in chemotherapy []. The family also includes acyl carrier protein phosphodiesterase 3.1.4.14 from EC. This enzyme converts holo-ACP to apo-ACP by hydrolytic cleavage of the phosphopantetheine residue from ACP []. This family is related to FMN_red IPR005025 from INTERPRO and Flavodoxin_1 IPR008254 from INTERPRO.; GO: 0009055 electron carrier activity, 0016491 oxidoreductase activity, 0050662 coenzyme binding; PDB: 1T5B_B 1DXQ_B 2B3D_A 2Z9D_B 2Z9C_A 2Z98_A 2D5I_A 2Z9B_A 1TIK_A 1V4B_A ....
Probab=31.20 E-value=22 Score=23.94 Aligned_cols=32 Identities=28% Similarity=0.161 Sum_probs=21.0
Q ss_pred cCccCEEEEeCCCCC---ccchhHHHHHHhhcCCC
Q psy2046 107 LTAADTVIIHDVDFN---PYNDKQAEDRCHRVGQT 138 (138)
Q Consensus 107 l~~~~~vi~~~~~~~---~~~~~Q~~gR~~R~GQt 138 (138)
+..|++||+.-|-|+ |..+.+=+.|+.+.|.+
T Consensus 76 l~~AD~iV~~~Pl~~~~~Pa~lK~~iD~v~~~g~~ 110 (199)
T PF02525_consen 76 LLWADHIVFAFPLYWFSMPAQLKGWIDRVFTPGFT 110 (199)
T ss_dssp HHHSSEEEEEEEEBTTBC-HHHHHHHHHHSHTTTS
T ss_pred HHHcCcceEeccceecccChhHHHHHHHhCcCCee
Confidence 346677777666655 55666778888877753
No 488
>cd08176 LPO Lactadehyde:propanediol oxidoreductase (LPO) catalyzes the interconversion between L-lactaldehyde and L-1,2-propanediol in Escherichia coli and other enterobacteria. Lactadehyde:propanediol oxidoreductase (LPO) is a member of the group III iron-activated dehydrogenases which catalyze the interconversion between L-lactaldehyde and L-1,2-propanediol in Escherichia coli and other enterobacteria. L-Fucose and L-rhamnose is used by Escherichia coli through an inducible pathway mediated by the fucose regulon comprising four linked oeprons fucO, fucA, fucPIK, and fucR. The fucA-encoded aldolase catalyzes the formation of dihydroxyacetone phosphate and L-lactaldehyde. Under anaerobic conditions, with NADH as a cofactor, lactaldehyde is converted by a fucO-encoded Lactadehyde:propanediol oxidoreductase (LPO) to L-1,2-propanediol, which is excreted as a fermentation product. In mutant strains, E. coli adapted to grow on L-1,2-propanediol, FucO catalyzes the oxidation of the polyol to
Probab=31.18 E-value=2.3e+02 Score=21.33 Aligned_cols=72 Identities=17% Similarity=0.301 Sum_probs=41.4
Q ss_pred CCcccccCchHHHHHHHHHHhhhCCCeEEEEeccH----HHHHHHHHHHhhcCCeEEEEeC---CCChHHHHHHHHHHhc
Q psy2046 15 PDDLVVESGKLKKLDEILPDLKKNGHRVLIFSQFI----FVLDILGHYMDIRGWRHLRLDG---ATQVSSRQELIDEYNR 87 (138)
Q Consensus 15 ~~~~~~~s~K~~~l~~ll~~~~~~~~k~iif~~~~----~~~~~l~~~l~~~g~~~~~i~g---~~~~~~R~~~~~~F~~ 87 (138)
|..+.--.+.+..+.+.++.+. .++++|.+... ...+.+.+.|+..|+.+..+.+ .-+.+.-.+..+.++.
T Consensus 6 p~~i~~G~g~l~~l~~~l~~~g--~~~~lvv~~~~~~~~~~~~~v~~~L~~~~~~~~~f~~v~~~p~~~~v~~~~~~~~~ 83 (377)
T cd08176 6 PPTNLFGAGAIKEIGDELKNLG--FKKALIVTDKGLVKIGVVEKVTDVLDEAGIDYVIYDGVKPNPTITNVKDGLAVFKK 83 (377)
T ss_pred CCeEEECcCHHHHHHHHHHHhC--CCeEEEECCchHhhcCcHHHHHHHHHHcCCeEEEeCCCCCCCCHHHHHHHHHHHHh
Confidence 3333333455666666655431 14676666532 1356788888888888776665 3444556666666664
Q ss_pred C
Q psy2046 88 D 88 (138)
Q Consensus 88 ~ 88 (138)
.
T Consensus 84 ~ 84 (377)
T cd08176 84 E 84 (377)
T ss_pred c
Confidence 3
No 489
>cd08170 GlyDH Glycerol dehydrogenases (GlyDH) catalyzes oxidation of glycerol to dihydroxyacetone in glycerol dissmilation. Glycerol dehydrogenases (GlyDH) is a key enzyme in the glycerol dissimilation pathway . In anaerobic conditions, many microorganisms utilize glycerol as a source of carbon through coupled oxidative and reductive pathways. One of the pathways involves the oxidation of glycerol to dihydroxyacetone with the reduction of NAD+ to NADH catalyzed by glycerol dehydrogenases. Dihydroxyacetone is then phosphorylated by dihydroxyacetone kinase and enters the glycolytic pathway for further degradation. The activity of GlyDH is zinc-dependent. The zinc ion plays a role in stabilizing an alkoxide intermediate at the active site.
Probab=31.11 E-value=2.2e+02 Score=21.11 Aligned_cols=62 Identities=23% Similarity=0.293 Sum_probs=33.0
Q ss_pred chHHHHHHHHHHhhhCCCeEEEEeccH---HHHHHHHHHHhhcCCeE--EEEeCCCChHHHHHHHHHHhc
Q psy2046 23 GKLKKLDEILPDLKKNGHRVLIFSQFI---FVLDILGHYMDIRGWRH--LRLDGATQVSSRQELIDEYNR 87 (138)
Q Consensus 23 ~K~~~l~~ll~~~~~~~~k~iif~~~~---~~~~~l~~~l~~~g~~~--~~i~g~~~~~~R~~~~~~F~~ 87 (138)
+.+..+.+.++.+ ++|++|.+... ...+.+.+.|+..|+.+ ..+.+..+.+.-.+..+.++.
T Consensus 9 g~~~~l~~~~~~~---~~r~livt~~~~~~~~~~~v~~~L~~~~i~~~~~~~~~~p~~~~v~~~~~~~~~ 75 (351)
T cd08170 9 GALDELGEYLARL---GKRALIIADEFVLDLVGAKIEESLAAAGIDARFEVFGGECTRAEIERLAEIARD 75 (351)
T ss_pred CHHHHHHHHHHHh---CCeEEEEECHHHHHHHHHHHHHHHHhCCCeEEEEEeCCcCCHHHHHHHHHHHhh
Confidence 3445555555443 45666666422 23455666666666653 345555555555565555553
No 490
>cd01452 VWA_26S_proteasome_subunit 26S proteasome plays a major role in eukaryotic protein breakdown, especially for ubiquitin-tagged proteins. It is an ATP-dependent protease responsible for the bulk of non-lysosomal proteolysis in eukaryotes, often using covalent modification of proteins by ubiquitylation. It consists of a 20S proteolytic core particle (CP) and a 19S regulatory particle (RP). The CP is an ATP independent peptidase consisting of hydrolyzing activities. One or both ends of CP carry the RP that confers both ubiquitin and ATP dependence to the 26S proteosome. The RP's proposed functions include recognition of substrates and translocation of these to CP for proteolysis. The RP can dissociate into a stable lid and base subcomplexes. The base is composed of three non-ATPase subunits (Rpn 1, 2 and 10). A single residue in the vWA domain of Rpn10 has been implicated to be responsible for stabilizing the lid-base association.
Probab=31.08 E-value=1.7e+02 Score=19.85 Aligned_cols=46 Identities=11% Similarity=0.021 Sum_probs=28.2
Q ss_pred CeEEEEeccH-----HHHHHHHHHHhhcCCeEEEEeCCCChHHHHHHHHHHh
Q psy2046 40 HRVLIFSQFI-----FVLDILGHYMDIRGWRHLRLDGATQVSSRQELIDEYN 86 (138)
Q Consensus 40 ~k~iif~~~~-----~~~~~l~~~l~~~g~~~~~i~g~~~~~~R~~~~~~F~ 86 (138)
.++|||.... ..+..+.+.|++.|+.+..+.=+.. .+..+.++.|.
T Consensus 108 ~rivi~v~S~~~~d~~~i~~~~~~lkk~~I~v~vI~~G~~-~~~~~~l~~~~ 158 (187)
T cd01452 108 QRIVAFVGSPIEEDEKDLVKLAKRLKKNNVSVDIINFGEI-DDNTEKLTAFI 158 (187)
T ss_pred ceEEEEEecCCcCCHHHHHHHHHHHHHcCCeEEEEEeCCC-CCCHHHHHHHH
Confidence 4777777666 4455677888888888655443333 33335556665
No 491
>PF00501 AMP-binding: AMP-binding enzyme; InterPro: IPR000873 A number of prokaryotic and eukaryotic enzymes, which appear to act via an ATP-dependent covalent binding of AMP to their substrate, share a region of sequence similarity [, , ]. This region is a Ser/Thr/Gly-rich domain that is further characterised by a conserved Pro-Lys-Gly triplet. The family of enzymes includes luciferase, long chain fatty acid Co-A ligase, acetyl-CoA synthetase and various other closely-related synthetases.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 2V7B_A 2Y4O_B 2VSQ_A 3L8C_B 1RY2_A 3KXW_A 3LNV_A 3ETC_B 3A9U_A 3A9V_A ....
Probab=31.07 E-value=2.2e+02 Score=21.05 Aligned_cols=62 Identities=19% Similarity=0.163 Sum_probs=41.9
Q ss_pred hHHHHHHHHHHh-hhCCCeEEEEeccHHHHHHHHHHHhhcCCeEEEEeCCCChHHHHHHHHHH
Q psy2046 24 KLKKLDEILPDL-KKNGHRVLIFSQFIFVLDILGHYMDIRGWRHLRLDGATQVSSRQELIDEY 85 (138)
Q Consensus 24 K~~~l~~ll~~~-~~~~~k~iif~~~~~~~~~l~~~l~~~g~~~~~i~g~~~~~~R~~~~~~F 85 (138)
+...+...|..+ .+.++.++++++.....-...-.+-..|..++.++-..+.++...+++.-
T Consensus 30 ~v~~la~~L~~~g~~~~~~V~i~~~n~~~~~~~~~A~~~~G~~~v~l~~~~~~~~~~~~l~~~ 92 (417)
T PF00501_consen 30 RVRKLAAALRKLGVKKGDRVAILLPNSIEFVVAFLACLRAGAIPVPLDPSLSEDELRHILRQS 92 (417)
T ss_dssp HHHHHHHHHHHTTSSTTSEEEEEESSSHHHHHHHHHHHHTT-EEEEEETTSSHHHHHHHHHHH
T ss_pred HHHHHhhHHHHhCCCccccccccCCccceeeeeeccccccccccccccccccccccccccccc
Confidence 444555555432 24577899998876544444444455799999999999988888888876
No 492
>TIGR03820 lys_2_3_AblA lysine-2,3-aminomutase. This model describes lysine-2,3-aminomutase as found along with beta-lysine acetyltransferase in a two-enzyme pathway for making the compatible solute N-epsilon-acetyl-beta-lysine. This compatible solute, or osmolyte, is known to protect a number of methanogenic archaea against salt stress. The trusted cutoff distinguishes a tight clade with essentially full-length homology from additional homologs that are shorter or highly diverged in the C-terminal region. All members of this family have the radical SAM motif CXXXCXXC, while some but not all have a second copy of the motif in the C-terminal region.
Probab=31.06 E-value=96 Score=24.04 Aligned_cols=20 Identities=10% Similarity=-0.218 Sum_probs=8.2
Q ss_pred HHHHHHhhcCCeEEEEeCCC
Q psy2046 54 ILGHYMDIRGWRHLRLDGAT 73 (138)
Q Consensus 54 ~l~~~l~~~g~~~~~i~g~~ 73 (138)
.+...|++.+..++.+|-..
T Consensus 207 ell~~Lk~~~~~~v~~h~nh 226 (417)
T TIGR03820 207 ELVAILKKHHPVWLNTHFNH 226 (417)
T ss_pred HHHHHHHhcCCeEEEEeCCC
Confidence 34444444443344444433
No 493
>cd06289 PBP1_MalI_like Ligand-binding domain of MalI, a transcription regulator of the maltose system of Escherichia coli and its close homologs from other bacteria. This group includes the ligand-binding domain of MalI, a transcription regulator of the maltose system of Escherichia coli and its close homologs from other bacteria. They are members of the LacI-GalR family of repressor proteins which are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=30.95 E-value=1.8e+02 Score=19.89 Aligned_cols=64 Identities=17% Similarity=0.124 Sum_probs=31.0
Q ss_pred HHHHHHHHHHh-hhCCCeEEEEeccH---HHHHHHHHHHhhcCCeEEEEeCCCChHHHHHHHHHHhcCCCc
Q psy2046 25 LKKLDEILPDL-KKNGHRVLIFSQFI---FVLDILGHYMDIRGWRHLRLDGATQVSSRQELIDEYNRDQDL 91 (138)
Q Consensus 25 ~~~l~~ll~~~-~~~~~k~iif~~~~---~~~~~l~~~l~~~g~~~~~i~g~~~~~~R~~~~~~F~~~~~~ 91 (138)
...+.+-+.+. .+.+-+++++.... ...+.+.. +...++..+.+.+..+.. ...++.++..+.+
T Consensus 14 ~~~~~~g~~~~a~~~g~~~~~~~~~~~~~~~~~~i~~-~~~~~vdgiii~~~~~~~--~~~~~~~~~~~ip 81 (268)
T cd06289 14 FAELAAGLEEVLEEAGYTVFLANSGEDVERQEQLLST-MLEHGVAGIILCPAAGTS--PDLLKRLAESGIP 81 (268)
T ss_pred HHHHHHHHHHHHHHcCCeEEEecCCCChHHHHHHHHH-HHHcCCCEEEEeCCCCcc--HHHHHHHHhcCCC
Confidence 34444444332 34466776665321 22334444 445677766666543322 2256666554444
No 494
>PRK05597 molybdopterin biosynthesis protein MoeB; Validated
Probab=30.90 E-value=91 Score=23.39 Aligned_cols=37 Identities=16% Similarity=0.251 Sum_probs=27.6
Q ss_pred CCCeEEEEeccHHHHHHHHHHHhhcCCe-EEEEeCCCC
Q psy2046 38 NGHRVLIFSQFIFVLDILGHYMDIRGWR-HLRLDGATQ 74 (138)
Q Consensus 38 ~~~k~iif~~~~~~~~~l~~~l~~~g~~-~~~i~g~~~ 74 (138)
.++++++||+.-.........|...|++ +..+.|++.
T Consensus 313 ~~~~IvvyC~~G~rS~~Aa~~L~~~G~~nV~~L~GGi~ 350 (355)
T PRK05597 313 AGDEVVVYCAAGVRSAQAVAILERAGYTGMSSLDGGIE 350 (355)
T ss_pred CCCeEEEEcCCCHHHHHHHHHHHHcCCCCEEEecCcHH
Confidence 4567888988876677777888888886 556777763
No 495
>TIGR01497 kdpB K+-transporting ATPase, B subunit. One sequence is apparently mis-annotated in the primary literature, but properly annotated by TIGR.
Probab=30.86 E-value=3.2e+02 Score=22.81 Aligned_cols=64 Identities=13% Similarity=0.159 Sum_probs=39.9
Q ss_pred HHHHHHHHhhhCCCeEEEEecc-------------HHHHHHHHHHHhhcCCeEEEEeCC--------------------C
Q psy2046 27 KLDEILPDLKKNGHRVLIFSQF-------------IFVLDILGHYMDIRGWRHLRLDGA--------------------T 73 (138)
Q Consensus 27 ~l~~ll~~~~~~~~k~iif~~~-------------~~~~~~l~~~l~~~g~~~~~i~g~--------------------~ 73 (138)
.+.+.+.++.+++.+++.++.. +......-+.|++.|+++..++|+ .
T Consensus 413 ~~~~~~~~~a~~G~r~l~va~~~~~lG~i~l~D~~Rp~a~eaI~~l~~~Gi~v~miTGD~~~ta~~iA~~lGI~~v~a~~ 492 (675)
T TIGR01497 413 DLDQAVDQVARQGGTPLVVCEDNRIYGVIYLKDIVKGGIKERFAQLRKMGIKTIMITGDNRLTAAAIAAEAGVDDFIAEA 492 (675)
T ss_pred HHHHHHHHHHhCCCeEEEEEECCEEEEEEEecccchhHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHcCCCEEEcCC
Confidence 3445555556666666655432 123444445566677777666664 6
Q ss_pred ChHHHHHHHHHHhcCCC
Q psy2046 74 QVSSRQELIDEYNRDQD 90 (138)
Q Consensus 74 ~~~~R~~~~~~F~~~~~ 90 (138)
+++++.+.++++++...
T Consensus 493 ~PedK~~~v~~lq~~g~ 509 (675)
T TIGR01497 493 TPEDKIALIRQEQAEGK 509 (675)
T ss_pred CHHHHHHHHHHHHHcCC
Confidence 78899999999986543
No 496
>cd01425 RPS2 Ribosomal protein S2 (RPS2), involved in formation of the translation initiation complex, where it might contact the messenger RNA and several components of the ribosome. It has been shown that in Escherichia coli RPS2 is essential for the binding of ribosomal protein S1 to the 30s ribosomal subunit. In humans, most likely in all vertebrates, and perhaps in all metazoans, the protein also functions as the 67 kDa laminin receptor (LAMR1 or 67LR), which is formed from a 37 kDa precursor, and is overexpressed in many tumors. 67LR is a cell surface receptor which interacts with a variety of ligands, laminin-1 and others. It is assumed that the ligand interactions are mediated via the conserved C-terminus, which becomes extracellular as the protein undergoes conformational changes which are not well understood. Specifically, a conserved palindromic motif, LMWWML, may participate in the interactions. 67LR plays essential roles in the adhesion of cells to the basement membrane an
Probab=30.76 E-value=1.7e+02 Score=19.78 Aligned_cols=44 Identities=11% Similarity=0.160 Sum_probs=31.1
Q ss_pred chHHHHHHHHHHhhhCCCeEEEEeccHHHHHHHHHHHhhcCCeE
Q psy2046 23 GKLKKLDEILPDLKKNGHRVLIFSQFIFVLDILGHYMDIRGWRH 66 (138)
Q Consensus 23 ~K~~~l~~ll~~~~~~~~k~iif~~~~~~~~~l~~~l~~~g~~~ 66 (138)
..+...+.++..+..++.++++.......-..++...+..+..+
T Consensus 40 ~~L~~A~~~i~~i~~~~g~iLfV~t~~~~~~~v~~~a~~~~~~~ 83 (193)
T cd01425 40 EKLRLALNFIANIAAKGGKILFVGTKPQAQRAVKKFAERTGSFY 83 (193)
T ss_pred HHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHHcCCee
Confidence 46677778888877777677666666666677777777666654
No 497
>cd06273 PBP1_GntR_like_1 This group includes the ligand-binding domain of putative DNA transcription repressors which are highly similar to that of the repressor specific for gluconate (GntR), a member of the LacI-GalR family of bacterial transcription regulators. This group includes the ligand-binding domain of putative DNA transcription repressors which are highly similar to that of the repressor specific for gluconate (GntR), a member of the LacI-GalR family of bacterial transcription regulators. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational
Probab=30.67 E-value=1.8e+02 Score=19.91 Aligned_cols=63 Identities=19% Similarity=0.137 Sum_probs=29.9
Q ss_pred HHHHHHHH-HHhhhCCCeEEEEeccH--H-HHHHHHHHHhhcCCeEEEEeCCCChHHHHHHHHHHhcCCCc
Q psy2046 25 LKKLDEIL-PDLKKNGHRVLIFSQFI--F-VLDILGHYMDIRGWRHLRLDGATQVSSRQELIDEYNRDQDL 91 (138)
Q Consensus 25 ~~~l~~ll-~~~~~~~~k~iif~~~~--~-~~~~l~~~l~~~g~~~~~i~g~~~~~~R~~~~~~F~~~~~~ 91 (138)
...+.+-+ +...+.|-.++++.... . ....+.. |...++..+.+.+..... ..++.++..+.+
T Consensus 14 ~~~~~~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-l~~~~vdgiii~~~~~~~---~~~~~l~~~~iP 80 (268)
T cd06273 14 FARVIQAFQETLAAHGYTLLVASSGYDLDREYAQARK-LLERGVDGLALIGLDHSP---ALLDLLARRGVP 80 (268)
T ss_pred HHHHHHHHHHHHHHCCCEEEEecCCCCHHHHHHHHHH-HHhcCCCEEEEeCCCCCH---HHHHHHHhCCCC
Confidence 33343333 33445577777765432 2 2233333 444567666666654322 334444444344
No 498
>COG0329 DapA Dihydrodipicolinate synthase/N-acetylneuraminate lyase [Amino acid transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=30.62 E-value=1.8e+02 Score=21.31 Aligned_cols=13 Identities=15% Similarity=0.411 Sum_probs=6.0
Q ss_pred ChHHHHHHHHHHh
Q psy2046 74 QVSSRQELIDEYN 86 (138)
Q Consensus 74 ~~~~R~~~~~~F~ 86 (138)
+.+||.++++...
T Consensus 55 s~eEr~~v~~~~v 67 (299)
T COG0329 55 TLEERKEVLEAVV 67 (299)
T ss_pred CHHHHHHHHHHHH
Confidence 4445554444444
No 499
>cd06270 PBP1_GalS_like Ligand binding domain of DNA transcription iso-repressor GalS, which is one of two regulatory proteins involved in galactose transport and metabolism. Ligand binding domain of DNA transcription iso-repressor GalS, which is one of two regulatory proteins involved in galactose transport and metabolism. Transcription of the galactose regulon genes is regulated by Gal iso-repressor (GalS) and Gal repressor (GalR) in different ways, but both repressors recognize the same DNA binding site in the absence of D-galactose. GalS is a dimeric protein like GalR,and its major role is in regulating expression of the high-affinity galactose transporter encoded by the mgl operon, whereas GalR is the exclusive regulator of galactose permease, the low-affinity galactose transporter. GalS and GalR are members of the LacI-GalR family of transcription regulators and both contain the type I periplasmic binding protein-like fold. Hence, they are homologous to the periplasmic sugar bindi
Probab=30.59 E-value=1.8e+02 Score=19.96 Aligned_cols=47 Identities=15% Similarity=0.107 Sum_probs=23.3
Q ss_pred HHHHHHHHHH-hhhCCCeEEEEeccHH---HHHHHHHHHhhcCCeEEEEeCC
Q psy2046 25 LKKLDEILPD-LKKNGHRVLIFSQFIF---VLDILGHYMDIRGWRHLRLDGA 72 (138)
Q Consensus 25 ~~~l~~ll~~-~~~~~~k~iif~~~~~---~~~~l~~~l~~~g~~~~~i~g~ 72 (138)
...+.+-+.+ ..+.+-+++++..... ..+.+.. +...++....+.+.
T Consensus 14 ~~~~~~g~~~~a~~~g~~~~~~~~~~~~~~~~~~i~~-~~~~~vdgii~~~~ 64 (268)
T cd06270 14 FGPLLSGVESVARKAGKHLIITAGHHSAEKEREAIEF-LLERRCDALILHSK 64 (268)
T ss_pred hHHHHHHHHHHHHHCCCEEEEEeCCCchHHHHHHHHH-HHHcCCCEEEEecC
Confidence 3344443333 3445667776653322 2233443 33456776777664
No 500
>KOG0330|consensus
Probab=30.58 E-value=2.6e+02 Score=21.82 Aligned_cols=89 Identities=15% Similarity=0.101 Sum_probs=58.8
Q ss_pred CchH-HHHHHHHHHhhhCC--CeEEEEeccHHHHHHHHHHHhhc----CCeEEEEeCCCChHHHHHHHHHHhcCCCceEE
Q psy2046 22 SGKL-KKLDEILPDLKKNG--HRVLIFSQFIFVLDILGHYMDIR----GWRHLRLDGATQVSSRQELIDEYNRDQDLFAF 94 (138)
Q Consensus 22 s~K~-~~l~~ll~~~~~~~--~k~iif~~~~~~~~~l~~~l~~~----g~~~~~i~g~~~~~~R~~~~~~F~~~~~~~vl 94 (138)
|+|. ..++-++..+.++. -..+|.++.++-...|.+.++.. |+.+..+-|+++. ....+.-++ .+.++
T Consensus 109 SGKT~afaLPIl~~LL~~p~~~~~lVLtPtRELA~QI~e~fe~Lg~~iglr~~~lvGG~~m--~~q~~~L~k---kPhil 183 (476)
T KOG0330|consen 109 SGKTGAFALPILQRLLQEPKLFFALVLTPTRELAQQIAEQFEALGSGIGLRVAVLVGGMDM--MLQANQLSK---KPHIL 183 (476)
T ss_pred CCchhhhHHHHHHHHHcCCCCceEEEecCcHHHHHHHHHHHHHhccccCeEEEEEecCchH--HHHHHHhhc---CCCEE
Confidence 4554 45667777776654 47899999999988888888765 6788999999873 333444443 34556
Q ss_pred EEeccccc------cccCcCccCEEEE
Q psy2046 95 LLSTKAGG------LGINLTAADTVII 115 (138)
Q Consensus 95 l~~~~~~~------~Gl~l~~~~~vi~ 115 (138)
++++.... .|.++-...+.|+
T Consensus 184 VaTPGrL~dhl~~Tkgf~le~lk~LVl 210 (476)
T KOG0330|consen 184 VATPGRLWDHLENTKGFSLEQLKFLVL 210 (476)
T ss_pred EeCcHHHHHHHHhccCccHHHhHHHhh
Confidence 66665432 4555555444443
Done!