Query psy2046
Match_columns 138
No_of_seqs 147 out of 1271
Neff 9.8
Searched_HMMs 29240
Date Fri Aug 16 22:52:58 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy2046.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/2046hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1z5z_A Helicase of the SNF2/RA 100.0 1.2E-34 4E-39 204.9 10.2 137 2-138 74-212 (271)
2 3mwy_W Chromo domain-containin 100.0 1.4E-29 4.9E-34 200.7 10.7 120 19-138 552-672 (800)
3 1z3i_X Similar to RAD54-like; 100.0 4E-28 1.4E-32 188.7 14.2 120 19-138 395-516 (644)
4 1z63_A Helicase of the SNF2/RA 100.0 2.7E-28 9.3E-33 184.4 12.3 121 18-138 320-441 (500)
5 1t5i_A C_terminal domain of A 100.0 1.4E-27 4.9E-32 158.3 13.4 116 19-138 13-128 (172)
6 2hjv_A ATP-dependent RNA helic 100.0 2E-27 6.7E-32 156.4 12.3 116 19-138 17-132 (163)
7 2jgn_A DBX, DDX3, ATP-dependen 99.9 1.3E-27 4.5E-32 160.3 8.6 118 18-138 26-143 (185)
8 2p6n_A ATP-dependent RNA helic 99.9 5.4E-27 1.8E-31 158.0 10.6 115 19-138 37-151 (191)
9 1fuk_A Eukaryotic initiation f 99.9 1.7E-26 5.8E-31 152.1 11.5 114 21-138 13-127 (165)
10 3eaq_A Heat resistant RNA depe 99.9 1.4E-25 4.6E-30 153.3 12.3 115 20-138 14-128 (212)
11 2rb4_A ATP-dependent RNA helic 99.9 1.7E-25 5.7E-30 148.6 10.7 112 23-138 20-137 (175)
12 1wp9_A ATP-dependent RNA helic 99.9 1.6E-25 5.3E-30 166.7 9.5 116 20-137 340-465 (494)
13 2yjt_D ATP-dependent RNA helic 99.9 3.7E-27 1.3E-31 156.0 0.0 113 22-138 15-127 (170)
14 3i32_A Heat resistant RNA depe 99.9 4.7E-24 1.6E-28 152.4 12.2 115 20-138 11-125 (300)
15 3dmq_A RNA polymerase-associat 99.9 6.4E-24 2.2E-28 171.2 10.8 120 17-138 483-603 (968)
16 2db3_A ATP-dependent RNA helic 99.9 2.4E-23 8.2E-28 155.3 11.2 115 19-138 283-397 (434)
17 1xti_A Probable ATP-dependent 99.9 1.1E-22 3.8E-27 148.8 11.6 114 21-138 234-347 (391)
18 4a2p_A RIG-I, retinoic acid in 99.9 3.3E-23 1.1E-27 157.6 7.8 113 21-136 370-497 (556)
19 2j0s_A ATP-dependent RNA helic 99.9 2.1E-22 7.1E-27 148.5 11.6 112 23-138 262-373 (410)
20 2i4i_A ATP-dependent RNA helic 99.9 2.4E-22 8.3E-27 148.2 10.2 116 20-138 258-373 (417)
21 1s2m_A Putative ATP-dependent 99.9 4.4E-22 1.5E-26 146.2 11.6 115 20-138 241-355 (400)
22 1hv8_A Putative ATP-dependent 99.9 3.5E-22 1.2E-26 144.7 10.3 113 21-138 223-335 (367)
23 3tbk_A RIG-I helicase domain; 99.9 9.5E-23 3.3E-27 154.7 6.7 113 21-135 369-495 (555)
24 3pey_A ATP-dependent RNA helic 99.9 1.6E-21 5.3E-26 142.5 11.1 112 23-138 229-346 (395)
25 1oyw_A RECQ helicase, ATP-depe 99.9 3.8E-21 1.3E-25 146.5 12.6 114 21-138 220-333 (523)
26 4a2q_A RIG-I, retinoic acid in 99.9 5E-22 1.7E-26 157.6 8.0 112 21-135 611-737 (797)
27 4a2w_A RIG-I, retinoic acid in 99.9 5.6E-22 1.9E-26 159.5 8.3 113 21-136 611-738 (936)
28 4gl2_A Interferon-induced heli 99.9 1.7E-22 5.7E-27 157.9 5.1 114 21-136 379-509 (699)
29 3fht_A ATP-dependent RNA helic 99.9 5.6E-21 1.9E-25 140.5 12.0 112 23-138 252-369 (412)
30 3eiq_A Eukaryotic initiation f 99.9 8.9E-22 3E-26 144.9 7.1 113 22-138 265-377 (414)
31 2v1x_A ATP-dependent DNA helic 99.8 9.5E-21 3.2E-25 146.1 11.4 99 38-138 266-364 (591)
32 2fwr_A DNA repair protein RAD2 99.8 1.3E-21 4.4E-26 146.9 6.3 110 20-138 332-441 (472)
33 3sqw_A ATP-dependent RNA helic 99.8 2.5E-20 8.5E-25 143.3 13.5 100 37-138 286-388 (579)
34 3i5x_A ATP-dependent RNA helic 99.8 3.6E-20 1.2E-24 141.7 13.5 100 37-138 337-439 (563)
35 2ykg_A Probable ATP-dependent 99.8 5.8E-21 2E-25 149.1 8.4 113 21-136 378-505 (696)
36 2oca_A DAR protein, ATP-depend 99.8 6.9E-20 2.4E-24 138.7 12.1 113 23-138 331-445 (510)
37 2z0m_A 337AA long hypothetical 99.8 2.6E-20 8.8E-25 133.6 8.6 96 37-138 218-313 (337)
38 3hgt_A HDA1 complex subunit 3; 99.8 1.3E-20 4.6E-25 134.7 7.0 114 18-138 104-225 (328)
39 1fuu_A Yeast initiation factor 99.8 1.1E-21 3.7E-26 143.5 0.0 111 24-138 246-356 (394)
40 1c4o_A DNA nucleotide excision 99.8 1.7E-18 5.9E-23 135.1 12.3 113 22-136 422-539 (664)
41 1tf5_A Preprotein translocase 99.8 3.7E-19 1.3E-23 140.1 8.0 115 20-138 413-535 (844)
42 3fmp_B ATP-dependent RNA helic 99.8 2.2E-20 7.6E-25 140.5 0.0 112 22-137 318-435 (479)
43 2d7d_A Uvrabc system protein B 99.8 4E-18 1.4E-22 132.9 12.5 113 22-136 428-545 (661)
44 3h1t_A Type I site-specific re 99.8 6.9E-19 2.3E-23 135.5 7.9 99 38-137 438-545 (590)
45 3oiy_A Reverse gyrase helicase 99.8 1.1E-18 3.9E-23 128.9 8.7 105 22-137 238-350 (414)
46 3jux_A Protein translocase sub 99.8 2.6E-18 8.8E-23 133.6 9.2 115 20-138 455-577 (822)
47 3fho_A ATP-dependent RNA helic 99.7 2.6E-19 8.9E-24 135.9 1.0 112 22-137 342-459 (508)
48 2fsf_A Preprotein translocase 99.7 8.1E-18 2.8E-22 132.4 8.8 115 20-138 422-573 (853)
49 2eyq_A TRCF, transcription-rep 99.7 1.7E-17 5.8E-22 135.8 9.1 112 24-138 798-912 (1151)
50 1nkt_A Preprotein translocase 99.7 4.2E-17 1.4E-21 128.9 9.9 115 20-138 441-607 (922)
51 2xgj_A ATP-dependent RNA helic 99.7 8.8E-17 3E-21 130.2 9.9 108 28-137 331-486 (1010)
52 2va8_A SSO2462, SKI2-type heli 99.7 2.3E-16 8E-21 123.8 11.1 107 29-137 242-395 (715)
53 1yks_A Genome polyprotein [con 99.7 2.2E-17 7.7E-22 123.4 4.7 94 36-136 174-286 (440)
54 1gm5_A RECG; helicase, replica 99.7 1.9E-17 6.6E-22 130.9 4.3 116 21-138 560-687 (780)
55 3rc3_A ATP-dependent RNA helic 99.7 2.7E-16 9.2E-21 122.7 10.2 97 40-137 321-431 (677)
56 3l9o_A ATP-dependent RNA helic 99.7 2.3E-16 7.8E-21 128.7 8.9 111 25-137 426-584 (1108)
57 2p6r_A Afuhel308 helicase; pro 99.7 2.6E-16 8.8E-21 123.4 8.7 106 30-137 233-375 (702)
58 2jlq_A Serine protease subunit 99.6 3.3E-16 1.1E-20 117.4 8.2 94 37-137 186-299 (451)
59 2wv9_A Flavivirin protease NS2 99.6 1.8E-16 6.3E-21 123.7 6.9 95 36-137 407-522 (673)
60 2zj8_A DNA helicase, putative 99.6 4.1E-16 1.4E-20 122.6 8.8 105 31-137 229-374 (720)
61 2whx_A Serine protease/ntpase/ 99.6 3.3E-16 1.1E-20 121.4 6.8 95 36-137 352-466 (618)
62 2z83_A Helicase/nucleoside tri 99.6 1.2E-16 3.9E-21 120.1 4.1 93 38-137 189-301 (459)
63 2v6i_A RNA helicase; membrane, 99.6 5.6E-16 1.9E-20 115.6 7.0 94 37-137 169-279 (431)
64 4a4z_A Antiviral helicase SKI2 99.6 5.8E-15 2E-19 119.5 10.2 110 23-137 322-479 (997)
65 2xau_A PRE-mRNA-splicing facto 99.6 1.9E-15 6.6E-20 119.6 6.9 111 23-135 285-431 (773)
66 4ddu_A Reverse gyrase; topoiso 99.6 3.4E-15 1.1E-19 121.9 7.4 87 23-120 296-388 (1104)
67 1gku_B Reverse gyrase, TOP-RG; 99.5 4.1E-15 1.4E-19 121.0 5.9 87 22-119 261-352 (1054)
68 3o8b_A HCV NS3 protease/helica 99.5 8.9E-15 3E-19 113.7 6.4 89 38-137 395-504 (666)
69 4f92_B U5 small nuclear ribonu 99.2 4.4E-11 1.5E-15 101.3 7.4 97 39-137 317-460 (1724)
70 4f92_B U5 small nuclear ribonu 99.2 9.2E-11 3.1E-15 99.3 8.9 99 37-137 1153-1295(1724)
71 2w00_A HSDR, R.ECOR124I; ATP-b 99.1 4.1E-10 1.4E-14 91.6 11.5 96 39-137 537-694 (1038)
72 2vl7_A XPD; helicase, unknown 98.4 1.6E-06 5.6E-11 66.3 9.6 91 26-123 370-466 (540)
73 2ipc_A Preprotein translocase 98.2 5.6E-06 1.9E-10 66.4 8.4 114 20-137 424-687 (997)
74 4a15_A XPD helicase, ATP-depen 97.7 0.00022 7.7E-09 55.4 8.9 90 26-121 434-528 (620)
75 1gm5_A RECG; helicase, replica 96.5 0.026 8.9E-07 45.1 10.4 99 20-119 398-500 (780)
76 3oiy_A Reverse gyrase helicase 96.1 0.074 2.5E-06 38.8 10.0 96 19-115 44-145 (414)
77 3crv_A XPD/RAD3 related DNA he 95.5 0.28 9.7E-06 37.4 11.6 88 25-120 378-473 (551)
78 2l82_A Designed protein OR32; 95.4 0.14 4.8E-06 30.8 7.5 46 42-87 5-50 (162)
79 4ddu_A Reverse gyrase; topoiso 95.3 0.16 5.5E-06 42.2 10.0 96 20-116 102-203 (1104)
80 2eyq_A TRCF, transcription-rep 94.5 0.51 1.7E-05 39.4 11.2 98 20-118 633-734 (1151)
81 3ipz_A Monothiol glutaredoxin- 94.0 0.52 1.8E-05 27.9 7.8 55 29-84 8-68 (109)
82 3zyw_A Glutaredoxin-3; metal b 93.6 0.57 2E-05 27.9 7.5 53 30-83 7-65 (111)
83 3gx8_A Monothiol glutaredoxin- 92.7 0.98 3.3E-05 27.3 8.5 54 30-84 7-69 (121)
84 1gku_B Reverse gyrase, TOP-RG; 92.5 1 3.5E-05 37.3 9.6 93 20-115 80-181 (1054)
85 2wem_A Glutaredoxin-related pr 91.8 1.3 4.5E-05 26.7 7.6 43 41-83 21-70 (118)
86 1wp9_A ATP-dependent RNA helic 91.7 2.1 7E-05 31.1 9.8 93 20-118 32-134 (494)
87 2wul_A Glutaredoxin related pr 91.0 1.6 5.6E-05 26.4 8.0 56 40-96 20-82 (118)
88 3g5j_A Putative ATP/GTP bindin 90.9 0.63 2.1E-05 28.1 5.4 48 26-74 76-125 (134)
89 2wci_A Glutaredoxin-4; redox-a 90.8 1.9 6.4E-05 26.7 7.6 56 29-85 25-86 (135)
90 2yan_A Glutaredoxin-3; oxidore 90.7 1.5 5.2E-05 25.4 8.3 56 30-86 8-69 (105)
91 3tbk_A RIG-I helicase domain; 89.6 1.6 5.4E-05 32.6 7.6 91 20-115 28-133 (555)
92 2lnd_A De novo designed protei 89.3 1.8 6.3E-05 24.4 8.8 61 25-86 37-99 (112)
93 2oxc_A Probable ATP-dependent 88.5 3.9 0.00013 27.0 9.6 89 21-115 71-172 (230)
94 1t6n_A Probable ATP-dependent 88.1 3.9 0.00013 26.6 10.9 93 21-117 61-166 (220)
95 4a2q_A RIG-I, retinoic acid in 88.1 2.9 9.9E-05 33.3 8.5 90 21-115 273-377 (797)
96 1oyw_A RECQ helicase, ATP-depe 87.8 5.4 0.00019 30.2 9.5 62 39-101 65-126 (523)
97 4a2p_A RIG-I, retinoic acid in 87.7 2.3 7.7E-05 31.8 7.4 92 20-116 31-137 (556)
98 3gk5_A Uncharacterized rhodane 87.3 0.9 3.1E-05 26.7 4.1 46 28-74 45-90 (108)
99 1wik_A Thioredoxin-like protei 86.7 2.9 0.0001 24.4 6.1 47 39-85 14-66 (109)
100 2lqo_A Putative glutaredoxin R 86.5 3.1 0.00011 23.8 6.0 44 41-84 5-49 (92)
101 2jtq_A Phage shock protein E; 86.5 2 6.7E-05 23.8 5.1 47 28-74 29-76 (85)
102 1xti_A Probable ATP-dependent 86.5 6.9 0.00023 27.7 11.0 92 20-115 54-158 (391)
103 1u6t_A SH3 domain-binding glut 86.0 1.8 6E-05 26.4 4.9 36 50-85 17-52 (121)
104 3iuy_A Probable ATP-dependent 85.8 5.6 0.00019 26.1 8.5 90 21-115 67-173 (228)
105 2v1x_A ATP-dependent DNA helic 85.6 6.1 0.00021 30.5 8.8 63 39-101 84-147 (591)
106 2pl3_A Probable ATP-dependent 85.5 6 0.0002 26.1 10.4 90 20-115 71-177 (236)
107 3sxu_A DNA polymerase III subu 84.9 2.2 7.4E-05 27.0 5.1 39 22-60 22-60 (150)
108 3fe2_A Probable ATP-dependent 84.8 6.7 0.00023 26.1 10.9 90 21-115 76-182 (242)
109 2j48_A Two-component sensor ki 84.5 3.9 0.00013 23.1 6.7 90 38-133 24-116 (119)
110 3ber_A Probable ATP-dependent 84.4 7.3 0.00025 26.2 11.2 91 20-115 89-192 (249)
111 1qde_A EIF4A, translation init 84.1 5.7 0.00019 25.9 7.2 90 20-115 60-161 (224)
112 3foj_A Uncharacterized protein 82.4 1.8 6.1E-05 24.8 3.7 37 37-73 54-90 (100)
113 3hix_A ALR3790 protein; rhodan 81.3 2.8 9.5E-05 24.3 4.3 37 37-73 50-87 (106)
114 3iwh_A Rhodanese-like domain p 81.3 1.5 5.3E-05 25.6 3.2 37 37-73 54-90 (103)
115 1t1v_A SH3BGRL3, SH3 domain-bi 80.7 5 0.00017 22.5 5.2 46 41-86 3-55 (93)
116 3eme_A Rhodanese-like domain p 80.7 1.7 5.7E-05 25.1 3.2 37 37-73 54-90 (103)
117 1gmx_A GLPE protein; transfera 80.6 2.9 0.0001 24.2 4.3 46 28-74 48-94 (108)
118 4gl2_A Interferon-induced heli 80.5 1.1 3.8E-05 34.9 2.9 92 20-116 31-143 (699)
119 1wv9_A Rhodanese homolog TT165 79.4 2.2 7.4E-05 24.1 3.3 35 40-74 54-88 (94)
120 3b6e_A Interferon-induced heli 79.1 5.9 0.0002 25.5 5.8 89 22-115 59-168 (216)
121 2ykg_A Probable ATP-dependent 79.1 9.4 0.00032 29.6 7.8 93 20-117 37-144 (696)
122 4b3f_X DNA-binding protein smu 79.0 5.9 0.0002 30.8 6.6 49 22-70 216-264 (646)
123 2db3_A ATP-dependent RNA helic 78.2 17 0.0006 26.5 9.4 90 21-115 103-209 (434)
124 4a2w_A RIG-I, retinoic acid in 78.2 5.4 0.00019 32.5 6.3 91 21-116 273-378 (936)
125 2oca_A DAR protein, ATP-depend 78.0 9.8 0.00034 28.3 7.4 87 21-115 138-231 (510)
126 3lte_A Response regulator; str 77.9 8 0.00027 22.4 7.1 94 38-136 29-126 (132)
127 3dwg_A Cysteine synthase B; su 76.6 17 0.00059 25.6 8.2 65 21-85 50-118 (325)
128 1rif_A DAR protein, DNA helica 76.0 15 0.00052 25.0 7.4 74 21-102 138-216 (282)
129 2ct6_A SH3 domain-binding glut 75.8 9.6 0.00033 22.3 5.6 46 40-85 8-60 (111)
130 2fsx_A RV0390, COG0607: rhodan 74.9 4.6 0.00016 24.9 4.2 38 37-74 78-116 (148)
131 2rkb_A Serine dehydratase-like 74.8 19 0.00065 25.2 8.2 65 21-85 35-99 (318)
132 3a10_A Response regulator; pho 74.8 9.2 0.00031 21.6 8.2 89 38-133 24-115 (116)
133 3nhv_A BH2092 protein; alpha-b 74.7 4.2 0.00014 25.1 3.9 37 38-74 71-109 (144)
134 2hhg_A Hypothetical protein RP 74.7 3.9 0.00013 24.8 3.7 38 37-74 84-122 (139)
135 2k0z_A Uncharacterized protein 74.3 4.6 0.00016 23.5 3.9 38 37-74 54-91 (110)
136 1tq1_A AT5G66040, senescence-a 74.1 3.9 0.00013 24.6 3.6 38 37-74 80-118 (129)
137 1q0u_A Bstdead; DEAD protein, 73.7 7.2 0.00025 25.4 5.1 90 21-115 51-156 (219)
138 3ilm_A ALR3790 protein; rhodan 73.2 5.3 0.00018 24.5 4.1 37 37-73 54-91 (141)
139 3flh_A Uncharacterized protein 72.7 2.6 9.1E-05 25.2 2.6 37 37-73 69-107 (124)
140 2gxq_A Heat resistant RNA depe 71.9 16 0.00056 23.2 10.0 91 20-115 47-150 (207)
141 1hv8_A Putative ATP-dependent 71.1 23 0.00079 24.5 9.8 90 20-115 53-153 (367)
142 1p5j_A L-serine dehydratase; l 70.1 28 0.00095 25.1 8.2 66 20-85 73-138 (372)
143 1j0a_A 1-aminocyclopropane-1-c 70.1 25 0.00087 24.6 7.7 65 21-85 51-118 (325)
144 4h27_A L-serine dehydratase/L- 69.7 23 0.0008 25.4 7.4 66 20-85 73-138 (364)
145 3aey_A Threonine synthase; PLP 69.4 27 0.00091 24.8 7.6 66 20-85 57-123 (351)
146 1ve1_A O-acetylserine sulfhydr 69.4 25 0.00087 24.3 7.7 65 21-85 37-107 (304)
147 2v03_A Cysteine synthase B; py 68.8 26 0.0009 24.3 8.0 73 21-97 38-114 (303)
148 3tla_A MCCF; serine protease, 68.4 31 0.0011 25.0 7.9 69 36-106 40-123 (371)
149 1vee_A Proline-rich protein fa 68.3 7 0.00024 23.6 3.8 38 37-74 72-110 (134)
150 1qxn_A SUD, sulfide dehydrogen 68.1 4.5 0.00016 24.7 2.9 38 37-74 80-118 (137)
151 2zsj_A Threonine synthase; PLP 67.9 27 0.00092 24.8 7.4 66 20-85 59-125 (352)
152 1y7l_A O-acetylserine sulfhydr 67.8 28 0.00096 24.3 7.6 66 20-85 38-107 (316)
153 3i42_A Response regulator rece 67.7 15 0.00051 21.1 7.4 92 39-136 27-123 (127)
154 2q3b_A Cysteine synthase A; py 67.7 28 0.00096 24.2 8.0 73 21-97 44-120 (313)
155 2egu_A Cysteine synthase; O-ac 67.0 29 0.00099 24.1 8.4 65 21-85 42-110 (308)
156 2rdm_A Response regulator rece 66.8 15 0.00052 21.1 5.1 91 38-137 28-125 (132)
157 2d1f_A Threonine synthase; ami 66.8 32 0.0011 24.6 8.3 66 20-85 65-131 (360)
158 1fuu_A Yeast initiation factor 66.8 30 0.001 24.3 8.8 90 21-116 68-169 (394)
159 3jx9_A Putative phosphoheptose 65.6 14 0.00049 23.7 5.0 39 36-74 75-116 (170)
160 2a9o_A Response regulator; ess 64.9 16 0.00054 20.6 4.9 91 38-135 24-118 (120)
161 3ly5_A ATP-dependent RNA helic 64.7 29 0.001 23.3 11.1 90 21-115 101-207 (262)
162 3d1p_A Putative thiosulfate su 64.4 5.7 0.0002 24.1 2.9 36 38-73 90-126 (139)
163 2gk6_A Regulator of nonsense t 64.3 22 0.00074 27.6 6.6 50 22-71 206-256 (624)
164 1s2m_A Putative ATP-dependent 63.2 37 0.0013 24.0 10.1 94 20-118 67-172 (400)
165 3grc_A Sensor protein, kinase; 63.2 20 0.00068 20.9 7.9 93 38-134 29-126 (140)
166 3qmx_A Glutaredoxin A, glutare 63.1 19 0.00063 20.5 7.7 46 39-84 15-61 (99)
167 1v5x_A PRA isomerase, phosphor 62.8 21 0.00072 23.5 5.6 51 26-78 40-90 (203)
168 1o58_A O-acetylserine sulfhydr 62.5 35 0.0012 23.6 7.0 66 20-85 43-110 (303)
169 2gkg_A Response regulator homo 62.2 19 0.00065 20.3 7.1 90 39-135 29-125 (127)
170 3hzu_A Thiosulfate sulfurtrans 61.9 16 0.00054 25.7 5.1 47 26-72 97-146 (318)
171 2q5c_A NTRC family transcripti 61.8 30 0.001 22.5 6.5 92 39-137 4-95 (196)
172 1wrb_A DJVLGB; RNA helicase, D 61.8 32 0.0011 22.8 10.7 71 40-115 101-180 (253)
173 3f6p_A Transcriptional regulat 61.7 20 0.00068 20.4 6.6 90 38-134 25-118 (120)
174 3dkp_A Probable ATP-dependent 61.5 16 0.00055 24.1 4.9 90 20-115 75-181 (245)
175 3tbh_A O-acetyl serine sulfhyd 61.5 40 0.0014 23.8 7.2 73 21-97 48-125 (334)
176 3nhm_A Response regulator; pro 61.2 21 0.00072 20.5 10.1 95 36-134 24-121 (133)
177 3hdv_A Response regulator; PSI 61.1 22 0.00074 20.6 5.8 90 39-135 31-127 (136)
178 1e0c_A Rhodanese, sulfurtransf 60.8 14 0.00049 25.0 4.6 47 26-72 67-116 (271)
179 2khp_A Glutaredoxin; thioredox 60.6 19 0.00063 19.7 7.5 51 41-91 7-58 (92)
180 2pqm_A Cysteine synthase; OASS 60.1 43 0.0015 23.7 7.2 65 21-85 55-123 (343)
181 3sr3_A Microcin immunity prote 59.9 44 0.0015 23.8 7.2 68 37-106 11-93 (336)
182 3dmn_A Putative DNA helicase; 59.8 30 0.001 21.8 9.6 77 27-120 49-125 (174)
183 3fmo_B ATP-dependent RNA helic 59.6 40 0.0014 23.2 7.5 88 20-115 140-241 (300)
184 3tg1_B Dual specificity protei 59.5 7.2 0.00025 24.3 2.7 35 39-73 93-136 (158)
185 1uar_A Rhodanese; sulfurtransf 59.2 18 0.00061 24.7 5.0 46 27-72 66-114 (285)
186 1urh_A 3-mercaptopyruvate sulf 59.2 10 0.00034 25.9 3.7 47 26-72 72-121 (280)
187 1uar_A Rhodanese; sulfurtransf 58.8 21 0.00073 24.3 5.3 48 26-73 219-269 (285)
188 3eqz_A Response regulator; str 58.8 23 0.0008 20.3 9.0 78 58-136 42-126 (135)
189 2fz4_A DNA repair protein RAD2 58.8 36 0.0012 22.6 6.3 50 22-74 119-169 (237)
190 1zgz_A Torcad operon transcrip 58.5 23 0.00077 20.0 5.8 90 38-134 25-118 (122)
191 4a4z_A Antiviral helicase SKI2 58.3 45 0.0015 27.6 7.7 54 21-74 64-119 (997)
192 1aba_A Glutaredoxin; electron 58.1 21 0.00071 19.4 7.4 45 42-86 2-56 (87)
193 3kto_A Response regulator rece 57.5 26 0.00089 20.4 6.0 73 60-135 47-126 (136)
194 1zh2_A KDP operon transcriptio 57.0 24 0.00081 19.8 4.9 91 38-135 24-118 (121)
195 3snk_A Response regulator CHEY 56.8 13 0.00043 21.8 3.5 28 40-67 15-43 (135)
196 1vec_A ATP-dependent RNA helic 56.6 35 0.0012 21.6 10.0 91 21-116 50-153 (206)
197 3l9o_A ATP-dependent RNA helic 56.4 55 0.0019 27.4 8.0 54 21-74 209-262 (1108)
198 1fov_A Glutaredoxin 3, GRX3; a 56.3 20 0.0007 18.8 7.0 51 41-91 2-53 (82)
199 1tzj_A ACC deaminase, 1-aminoc 56.3 35 0.0012 23.9 6.2 66 20-85 47-122 (338)
200 2xzl_A ATP-dependent helicase 56.2 28 0.00097 28.0 6.2 50 22-71 386-436 (802)
201 2j9r_A Thymidine kinase; TK1, 56.1 15 0.00052 24.5 4.0 32 20-51 37-68 (214)
202 1z7w_A Cysteine synthase; tran 56.1 49 0.0017 23.1 8.0 65 21-85 43-112 (322)
203 2z0m_A 337AA long hypothetical 56.0 45 0.0015 22.7 9.9 87 20-115 40-135 (337)
204 1nsj_A PRAI, phosphoribosyl an 55.4 42 0.0014 22.1 9.4 50 26-77 41-90 (205)
205 3aay_A Putative thiosulfate su 55.0 26 0.00088 23.8 5.2 47 27-73 213-262 (277)
206 2fwr_A DNA repair protein RAD2 54.9 34 0.0012 25.0 6.1 51 21-74 118-169 (472)
207 2wjy_A Regulator of nonsense t 54.8 35 0.0012 27.5 6.4 50 22-71 382-432 (800)
208 2xgj_A ATP-dependent RNA helic 54.6 68 0.0023 26.6 8.2 54 21-74 111-164 (1010)
209 1f2d_A 1-aminocyclopropane-1-c 54.2 36 0.0012 24.0 6.0 66 20-85 47-125 (341)
210 2i4i_A ATP-dependent RNA helic 54.2 55 0.0019 23.2 10.6 71 40-115 102-181 (417)
211 3nvb_A Uncharacterized protein 54.2 37 0.0013 24.8 6.0 108 25-135 258-373 (387)
212 3cnb_A DNA-binding response re 53.9 30 0.001 20.0 6.7 92 38-136 32-131 (143)
213 3e4c_A Caspase-1; zymogen, inf 53.2 56 0.0019 22.9 8.1 46 41-87 62-118 (302)
214 2obb_A Hypothetical protein; s 53.1 23 0.00079 21.9 4.2 48 27-74 28-76 (142)
215 3cg4_A Response regulator rece 53.1 31 0.0011 20.0 10.1 92 39-134 31-126 (142)
216 3gt7_A Sensor protein; structu 52.9 34 0.0012 20.4 6.2 89 39-134 31-126 (154)
217 4e5s_A MCCFLIKE protein (BA_56 52.4 60 0.0021 23.1 7.7 68 37-106 10-92 (331)
218 3e2i_A Thymidine kinase; Zn-bi 51.9 23 0.00077 23.8 4.3 33 20-52 37-69 (219)
219 2wlr_A Putative thiosulfate su 51.7 42 0.0014 24.5 6.1 48 26-73 189-238 (423)
220 3h11_A CAsp8 and FADD-like apo 51.5 18 0.00062 25.0 3.9 46 41-87 45-90 (272)
221 1urh_A 3-mercaptopyruvate sulf 51.2 13 0.00044 25.4 3.1 38 37-74 228-266 (280)
222 3sqw_A ATP-dependent RNA helic 51.1 78 0.0027 24.0 9.0 92 20-115 69-181 (579)
223 2yv1_A Succinyl-COA ligase [AD 50.1 62 0.0021 22.5 6.5 62 41-102 152-217 (294)
224 4h1h_A LMO1638 protein; MCCF-l 50.0 65 0.0022 22.8 7.7 68 37-106 10-92 (327)
225 2jba_A Phosphate regulon trans 50.0 33 0.0011 19.4 6.6 75 58-135 41-122 (127)
226 3l6b_A Serine racemase; pyrido 50.0 53 0.0018 23.3 6.3 66 20-85 52-121 (346)
227 1oi7_A Succinyl-COA synthetase 49.7 62 0.0021 22.4 7.2 62 41-102 146-211 (288)
228 1dc7_A NTRC, nitrogen regulati 49.6 25 0.00086 19.7 3.9 79 59-137 43-123 (124)
229 3aay_A Putative thiosulfate su 49.6 35 0.0012 23.1 5.1 47 26-72 63-112 (277)
230 2eg4_A Probable thiosulfate su 49.2 32 0.0011 22.6 4.8 44 27-72 50-95 (230)
231 1vlj_A NADH-dependent butanol 48.3 76 0.0026 23.1 8.4 65 22-88 28-100 (407)
232 2qzj_A Two-component response 48.2 39 0.0013 19.7 5.6 89 39-134 28-120 (136)
233 1srr_A SPO0F, sporulation resp 48.1 34 0.0012 19.3 4.4 91 38-135 26-121 (124)
234 2kpo_A Rossmann 2X2 fold prote 48.0 35 0.0012 19.1 8.5 61 27-88 37-99 (110)
235 1qkk_A DCTD, C4-dicarboxylate 47.8 42 0.0014 19.9 7.0 75 57-134 41-120 (155)
236 3pc3_A CG1753, isoform A; CBS, 47.7 84 0.0029 23.7 7.4 65 21-85 90-158 (527)
237 1dbw_A Transcriptional regulat 47.1 38 0.0013 19.2 6.5 76 58-136 42-122 (126)
238 2eg4_A Probable thiosulfate su 46.8 19 0.00066 23.7 3.4 38 37-74 182-219 (230)
239 1o2d_A Alcohol dehydrogenase, 46.6 78 0.0027 22.7 8.6 65 22-89 26-98 (371)
240 2yv2_A Succinyl-COA synthetase 46.6 71 0.0024 22.2 7.1 62 41-102 153-218 (297)
241 1k66_A Phytochrome response re 46.5 42 0.0014 19.5 5.5 70 62-134 61-137 (149)
242 3czq_A Putative polyphosphate 46.3 15 0.00053 25.9 2.9 73 40-130 86-163 (304)
243 1rzw_A Protein AF2095(GR4); be 46.2 47 0.0016 20.1 5.5 39 32-70 40-79 (123)
244 1wn2_A Peptidyl-tRNA hydrolase 45.9 47 0.0016 19.9 6.4 39 32-70 47-86 (121)
245 2j0s_A ATP-dependent RNA helic 45.8 77 0.0026 22.4 10.6 91 21-116 84-186 (410)
246 2klx_A Glutaredoxin; thioredox 45.5 35 0.0012 18.4 5.7 43 41-85 7-50 (89)
247 4d9b_A D-cysteine desulfhydras 45.4 78 0.0027 22.3 7.2 66 20-85 61-136 (342)
248 4f67_A UPF0176 protein LPG2838 45.1 22 0.00075 24.5 3.5 38 37-74 179-217 (265)
249 1e0c_A Rhodanese, sulfurtransf 45.0 22 0.00075 24.0 3.5 37 37-73 221-258 (271)
250 2p6r_A Afuhel308 helicase; pro 44.9 96 0.0033 24.2 7.5 87 21-115 50-144 (702)
251 1ego_A Glutaredoxin; electron 44.7 20 0.00069 19.0 2.8 46 41-86 2-53 (85)
252 2lsn_A Reverse transcriptase; 44.2 54 0.0018 20.7 5.0 36 25-60 61-96 (165)
253 1wkv_A Cysteine synthase; homo 44.0 90 0.0031 22.7 7.7 64 21-85 124-190 (389)
254 1xty_A PTH, peptidyl-tRNA hydr 43.7 51 0.0017 19.7 6.4 41 30-70 44-85 (120)
255 2yxb_A Coenzyme B12-dependent 43.4 58 0.002 20.3 6.2 46 39-84 18-67 (161)
256 2l82_A Designed protein OR32; 42.9 52 0.0018 19.6 6.8 37 53-89 90-129 (162)
257 2fp3_A Caspase NC; apoptosis, 42.8 86 0.0029 22.1 7.2 45 41-86 63-119 (316)
258 1rhs_A Sulfur-substituted rhod 42.6 25 0.00086 24.2 3.6 48 27-74 227-276 (296)
259 3bor_A Human initiation factor 42.5 69 0.0024 20.9 8.5 91 21-115 77-179 (237)
260 2amj_A Modulator of drug activ 42.4 38 0.0013 22.0 4.3 30 107-136 68-100 (204)
261 1xx6_A Thymidine kinase; NESG, 42.2 34 0.0012 22.1 4.0 31 20-50 17-47 (191)
262 1jq5_A Glycerol dehydrogenase; 42.1 91 0.0031 22.2 7.9 60 24-86 19-83 (370)
263 2rjn_A Response regulator rece 41.9 53 0.0018 19.4 6.3 91 38-134 30-125 (154)
264 1yya_A Triosephosphate isomera 41.6 28 0.00097 23.8 3.6 12 110-121 159-170 (250)
265 3kht_A Response regulator; PSI 41.5 51 0.0018 19.1 6.4 74 58-134 46-127 (144)
266 3bbn_B Ribosomal protein S2; s 41.5 51 0.0018 22.3 4.8 64 23-86 48-115 (231)
267 2fsf_A Preprotein translocase 41.5 1.5E+02 0.005 24.3 10.1 73 21-101 97-174 (853)
268 1mb3_A Cell division response 41.3 47 0.0016 18.6 6.0 93 38-134 24-120 (124)
269 3ovg_A Amidohydrolase; structu 41.2 65 0.0022 23.2 5.6 73 27-101 197-276 (363)
270 2j6p_A SB(V)-AS(V) reductase; 41.2 54 0.0019 20.0 4.7 21 54-74 88-111 (152)
271 1ta9_A Glycerol dehydrogenase; 41.1 1E+02 0.0035 22.9 6.8 62 23-87 77-144 (450)
272 1tf5_A Preprotein translocase 40.9 1.5E+02 0.0051 24.3 10.7 72 22-101 107-183 (844)
273 2zv3_A PTH, peptidyl-tRNA hydr 40.7 56 0.0019 19.3 6.3 38 32-69 41-79 (115)
274 1xhf_A DYE resistance, aerobic 40.1 49 0.0017 18.5 5.2 72 60-134 44-119 (123)
275 3e05_A Precorrin-6Y C5,15-meth 39.9 32 0.0011 21.8 3.6 41 25-65 121-161 (204)
276 3jte_A Response regulator rece 39.9 54 0.0019 19.0 5.8 92 38-134 26-122 (143)
277 2qxy_A Response regulator; reg 39.9 54 0.0019 18.9 7.1 90 38-135 27-121 (142)
278 1tmy_A CHEY protein, TMY; chem 39.6 49 0.0017 18.4 7.0 71 60-133 44-119 (120)
279 2qr3_A Two-component system re 39.5 54 0.0018 18.8 6.7 91 38-135 26-126 (140)
280 1k68_A Phytochrome response re 39.2 54 0.0018 18.7 6.0 70 62-134 54-130 (140)
281 3dmq_A RNA polymerase-associat 39.1 18 0.0006 29.8 2.6 81 20-103 179-261 (968)
282 3jy6_A Transcriptional regulat 39.1 82 0.0028 20.8 7.2 68 25-97 22-92 (276)
283 2gn0_A Threonine dehydratase c 39.0 60 0.0021 22.9 5.1 65 20-85 67-133 (342)
284 2ipc_A Preprotein translocase 38.7 1.7E+02 0.0059 24.4 8.5 44 38-81 119-166 (997)
285 1rlk_A Hypothetical protein TA 38.6 62 0.0021 19.2 6.3 39 32-70 43-82 (117)
286 4aec_A Cysteine synthase, mito 38.6 1.2E+02 0.0041 22.5 7.9 73 21-97 151-228 (430)
287 3ocu_A Lipoprotein E; hydrolas 38.3 69 0.0023 22.0 5.1 40 27-66 105-146 (262)
288 2gwr_A DNA-binding response re 38.2 80 0.0027 20.4 6.8 91 38-135 28-122 (238)
289 3msz_A Glutaredoxin 1; alpha-b 38.1 46 0.0016 17.6 6.1 34 40-73 4-38 (89)
290 3h1t_A Type I site-specific re 37.9 1.3E+02 0.0044 22.7 7.5 51 21-71 208-268 (590)
291 3dm5_A SRP54, signal recogniti 37.6 1.3E+02 0.0043 22.5 9.5 78 21-99 110-191 (443)
292 3vc3_A Beta-cyanoalnine syntha 37.5 1.1E+02 0.0037 21.7 7.9 65 21-85 63-132 (344)
293 2pl1_A Transcriptional regulat 37.2 54 0.0019 18.2 5.5 90 38-134 23-117 (121)
294 2v5b_A Triosephosphate isomera 37.0 49 0.0017 22.6 4.2 46 42-88 61-114 (244)
295 3klo_A Transcriptional regulat 36.9 82 0.0028 20.2 7.0 80 53-135 44-129 (225)
296 3hv2_A Response regulator/HD d 36.6 66 0.0023 19.0 5.9 90 39-134 38-132 (153)
297 3tb6_A Arabinose metabolism tr 36.5 92 0.0032 20.6 6.8 11 61-71 69-79 (298)
298 2qv0_A Protein MRKE; structura 36.4 63 0.0021 18.7 5.2 71 60-133 52-125 (143)
299 1w4r_A Thymidine kinase; type 36.3 48 0.0016 21.8 3.9 29 20-48 29-57 (195)
300 2gmw_A D,D-heptose 1,7-bisphos 36.2 84 0.0029 20.1 7.8 40 26-65 53-105 (211)
301 1yt8_A Thiosulfate sulfurtrans 36.1 41 0.0014 25.5 4.1 36 38-73 321-357 (539)
302 3hjh_A Transcription-repair-co 36.0 25 0.00087 26.5 2.9 67 38-118 381-447 (483)
303 3pct_A Class C acid phosphatas 36.0 1E+02 0.0036 21.1 5.8 41 26-66 104-146 (260)
304 1nm3_A Protein HI0572; hybrid, 35.8 92 0.0031 20.4 6.9 61 24-85 154-215 (241)
305 3egc_A Putative ribose operon 35.7 96 0.0033 20.6 6.7 11 61-71 62-72 (291)
306 3olh_A MST, 3-mercaptopyruvate 35.6 22 0.00074 24.8 2.3 49 26-74 240-290 (302)
307 3kke_A LACI family transcripti 35.2 1E+02 0.0035 20.7 6.6 13 59-71 67-79 (303)
308 3mwd_B ATP-citrate synthase; A 35.1 1.2E+02 0.0042 21.6 6.9 58 40-97 169-230 (334)
309 3h11_B Caspase-8; cell death, 34.9 1.1E+02 0.0037 21.0 7.9 37 50-87 49-85 (271)
310 3f6c_A Positive transcription 34.9 64 0.0022 18.3 7.2 91 38-135 24-120 (134)
311 3cfy_A Putative LUXO repressor 34.8 63 0.0022 18.7 4.1 90 38-134 27-121 (137)
312 3uug_A Multiple sugar-binding 34.5 1.1E+02 0.0037 20.8 6.2 51 36-88 30-83 (330)
313 3i2v_A Adenylyltransferase and 34.2 28 0.00096 20.3 2.4 34 41-74 74-114 (127)
314 2orv_A Thymidine kinase; TP4A 34.2 48 0.0016 22.5 3.7 31 20-50 28-58 (234)
315 2fp4_A Succinyl-COA ligase [GD 34.0 1.2E+02 0.0041 21.2 6.5 61 41-101 154-218 (305)
316 3pey_A ATP-dependent RNA helic 33.9 1.2E+02 0.004 21.1 7.0 88 20-116 53-152 (395)
317 3o74_A Fructose transport syst 33.3 1E+02 0.0034 20.1 6.7 38 36-73 29-68 (272)
318 2wm8_A MDP-1, magnesium-depend 33.1 88 0.003 19.4 6.4 63 22-88 120-182 (187)
319 2ayx_A Sensor kinase protein R 33.0 41 0.0014 22.4 3.3 34 38-71 10-43 (254)
320 1m72_A Caspase-1; caspase, cys 32.9 1.2E+02 0.0041 20.8 8.1 47 41-88 34-93 (272)
321 1jr5_A 10 kDa anti-sigma facto 32.9 14 0.00049 21.0 0.8 38 53-90 31-78 (90)
322 3h7a_A Short chain dehydrogena 32.6 1.1E+02 0.0037 20.2 9.1 65 31-95 23-88 (252)
323 1jbq_A B, cystathionine beta-s 32.6 1.5E+02 0.0051 21.9 8.0 64 22-85 139-206 (435)
324 4fn4_A Short chain dehydrogena 32.3 1.2E+02 0.004 20.6 8.0 43 33-75 25-67 (254)
325 2cq9_A GLRX2 protein, glutared 32.3 80 0.0027 18.6 7.9 51 41-91 28-82 (130)
326 2hze_A Glutaredoxin-1; thiored 31.8 74 0.0025 18.1 7.0 53 39-91 18-77 (114)
327 2zxr_A Single-stranded DNA spe 31.8 1.3E+02 0.0043 23.9 6.1 46 23-68 56-105 (666)
328 3ntd_A FAD-dependent pyridine 31.6 45 0.0015 25.1 3.6 38 37-74 522-559 (565)
329 3k4h_A Putative transcriptiona 31.6 1.1E+02 0.0038 20.2 5.4 38 36-73 40-79 (292)
330 3eod_A Protein HNR; response r 31.5 73 0.0025 18.0 5.8 17 117-133 107-124 (130)
331 3to5_A CHEY homolog; alpha(5)b 31.2 87 0.003 18.8 7.7 71 60-133 54-131 (134)
332 1s8n_A Putative antiterminator 31.2 98 0.0034 19.3 7.6 89 38-133 36-129 (205)
333 3heb_A Response regulator rece 31.2 82 0.0028 18.4 6.0 92 41-135 32-135 (152)
334 3l49_A ABC sugar (ribose) tran 31.1 1.2E+02 0.0039 20.1 6.5 59 36-97 32-93 (291)
335 1byk_A Protein (trehalose oper 30.9 1.1E+02 0.0038 19.8 7.3 18 53-70 22-39 (255)
336 2dko_A Caspase-3; low barrier 30.8 97 0.0033 19.1 7.5 38 50-88 41-78 (146)
337 2ouc_A Dual specificity protei 30.7 22 0.00075 21.1 1.5 35 39-73 83-126 (142)
338 4aaj_A N-(5'-phosphoribosyl)an 30.6 1.2E+02 0.0042 20.2 5.5 32 53-84 82-113 (228)
339 3lfu_A DNA helicase II; SF1 he 30.6 84 0.0029 24.0 5.0 53 25-78 330-385 (647)
340 3qhq_A CSN2, SAG0897 family cr 30.3 1.1E+02 0.0039 20.5 5.1 48 23-72 147-199 (229)
341 1nkt_A Preprotein translocase 30.2 2.3E+02 0.008 23.4 9.9 43 38-80 151-197 (922)
342 3ipl_A 2-succinylbenzoate--COA 30.1 1.6E+02 0.0055 21.5 8.9 70 24-99 35-104 (501)
343 3mwd_B ATP-citrate synthase; A 29.7 1.2E+02 0.0042 21.6 5.4 47 40-86 81-128 (334)
344 3h5o_A Transcriptional regulat 29.4 1.4E+02 0.0047 20.5 7.7 50 49-98 78-127 (339)
345 1q7s_A BIT1, protein CGI-147; 29.4 92 0.0031 18.4 6.4 38 32-69 43-81 (117)
346 3miz_A Putative transcriptiona 29.3 1.3E+02 0.0044 20.1 7.0 49 50-98 31-79 (301)
347 2l5g_B Putative uncharacterize 29.2 38 0.0013 16.3 1.9 14 121-134 3-16 (42)
348 3lfu_A DNA helicase II; SF1 he 29.2 90 0.0031 23.9 5.0 41 21-61 32-76 (647)
349 1zl0_A Hypothetical protein PA 29.2 1.5E+02 0.0051 20.8 6.3 68 37-106 15-94 (311)
350 3hcw_A Maltose operon transcri 29.2 1.2E+02 0.004 20.3 5.2 38 36-73 39-78 (295)
351 1y80_A Predicted cobalamin bin 29.2 1.2E+02 0.004 19.6 6.5 47 39-85 88-138 (210)
352 2qvg_A Two component response 29.1 86 0.0029 18.0 5.7 71 63-136 59-136 (143)
353 3ics_A Coenzyme A-disulfide re 29.1 50 0.0017 25.1 3.5 37 38-74 540-576 (588)
354 3hz7_A Uncharacterized protein 28.9 79 0.0027 17.6 6.5 41 29-69 19-59 (87)
355 3l6u_A ABC-type sugar transpor 28.8 1.3E+02 0.0044 19.9 7.2 11 61-71 62-72 (293)
356 3huu_A Transcription regulator 28.7 1.2E+02 0.0041 20.4 5.2 17 54-70 48-64 (305)
357 2nu8_A Succinyl-COA ligase [AD 28.7 1.4E+02 0.0049 20.5 7.2 62 41-102 146-211 (288)
358 2v6i_A RNA helicase; membrane, 28.6 82 0.0028 23.0 4.5 50 21-72 12-62 (431)
359 3rot_A ABC sugar transporter, 28.6 1.3E+02 0.0045 20.0 8.7 67 52-118 149-226 (297)
360 3lcm_A SMU.1420, putative oxid 28.5 21 0.00072 23.0 1.2 31 107-137 71-104 (196)
361 3r6w_A FMN-dependent NADH-azor 28.4 21 0.00071 23.2 1.2 31 107-137 85-118 (212)
362 3e61_A Putative transcriptiona 28.4 1.3E+02 0.0043 19.8 6.3 35 37-71 36-72 (277)
363 3utn_X Thiosulfate sulfurtrans 28.3 82 0.0028 22.3 4.3 36 39-74 275-311 (327)
364 3s5u_A Putative uncharacterize 28.3 1.2E+02 0.0041 20.2 4.9 49 23-73 147-200 (220)
365 1ry2_A Acetyl-coenzyme A synth 28.2 2.1E+02 0.0071 22.1 8.5 71 24-98 122-194 (663)
366 2pln_A HP1043, response regula 28.2 88 0.003 17.9 5.1 17 118-134 115-132 (137)
367 3m9w_A D-xylose-binding peripl 28.1 1.4E+02 0.0047 20.1 7.4 59 36-97 29-90 (313)
368 2btm_A TIM, protein (triosepho 27.8 43 0.0015 23.0 2.6 12 110-121 159-170 (252)
369 1yt8_A Thiosulfate sulfurtrans 27.8 70 0.0024 24.2 4.1 38 37-74 428-466 (539)
370 2l69_A Rossmann 2X3 fold prote 27.6 93 0.0032 17.9 7.8 30 42-71 5-34 (134)
371 1okg_A Possible 3-mercaptopyru 27.6 86 0.0029 22.5 4.4 49 26-74 81-132 (373)
372 3dbi_A Sugar-binding transcrip 27.5 1.5E+02 0.0051 20.3 6.7 47 50-96 80-126 (338)
373 3mm4_A Histidine kinase homolo 27.5 1.2E+02 0.0041 19.2 5.5 26 39-64 61-86 (206)
374 2qh8_A Uncharacterized protein 27.5 1.4E+02 0.0049 20.0 6.8 18 54-71 60-77 (302)
375 3kjx_A Transcriptional regulat 27.4 1.5E+02 0.0052 20.3 7.0 48 50-97 85-132 (344)
376 2zj8_A DNA helicase, putative 27.4 1E+02 0.0035 24.1 5.1 58 20-77 48-109 (720)
377 1czn_A Flavodoxin; FMN binding 27.3 1.1E+02 0.0038 18.7 5.4 29 38-66 79-116 (169)
378 3dmy_A Protein FDRA; predicted 27.3 2E+02 0.0069 21.7 7.4 59 41-99 114-180 (480)
379 3d8u_A PURR transcriptional re 27.3 1.3E+02 0.0045 19.6 6.1 38 36-73 30-69 (275)
380 1jr2_A Uroporphyrinogen-III sy 27.2 50 0.0017 22.6 3.0 44 22-66 140-183 (286)
381 1dbq_A Purine repressor; trans 27.2 1.4E+02 0.0047 19.7 7.1 37 37-73 35-73 (289)
382 2wlr_A Putative thiosulfate su 27.1 63 0.0021 23.5 3.6 37 37-73 356-393 (423)
383 3gyb_A Transcriptional regulat 27.0 1.4E+02 0.0047 19.6 5.7 38 50-88 22-59 (280)
384 2dri_A D-ribose-binding protei 26.9 1.4E+02 0.0047 19.6 6.4 35 37-72 29-66 (271)
385 2nn3_C Caspase-1; cysteine pro 26.6 1.7E+02 0.0058 20.6 8.0 46 41-87 62-120 (310)
386 3ff4_A Uncharacterized protein 26.3 1.1E+02 0.0037 18.2 4.2 35 39-74 59-93 (122)
387 3lua_A Response regulator rece 26.3 98 0.0033 17.7 8.0 91 38-135 28-127 (140)
388 3krs_A Triosephosphate isomera 26.2 1.6E+02 0.0056 20.3 5.6 12 110-121 181-192 (271)
389 3e3m_A Transcriptional regulat 26.1 1.6E+02 0.0056 20.3 7.2 48 50-97 87-134 (355)
390 3mw8_A Uroporphyrinogen-III sy 25.9 13 0.00044 24.7 -0.2 61 38-99 119-182 (240)
391 4dad_A Putative pilus assembly 25.7 1E+02 0.0035 17.8 8.8 94 40-136 46-142 (146)
392 2p9j_A Hypothetical protein AQ 25.6 1.1E+02 0.0039 18.2 8.3 59 29-90 42-101 (162)
393 1pg4_A Acetyl-COA synthetase; 25.6 2.3E+02 0.0079 21.8 9.2 70 24-97 116-186 (652)
394 3tp9_A Beta-lactamase and rhod 25.4 61 0.0021 23.9 3.3 38 37-74 425-463 (474)
395 4es6_A Uroporphyrinogen-III sy 25.4 22 0.00076 23.8 0.9 42 24-66 115-159 (254)
396 3kcn_A Adenylate cyclase homol 25.2 1.1E+02 0.0037 17.9 7.3 91 37-133 25-121 (151)
397 2yv1_A Succinyl-COA ligase [AD 25.1 1.7E+02 0.0059 20.2 6.9 49 38-87 70-119 (294)
398 1jbe_A Chemotaxis protein CHEY 25.1 97 0.0033 17.3 6.5 74 58-134 44-124 (128)
399 2csu_A 457AA long hypothetical 24.9 2.1E+02 0.0073 21.2 7.4 61 41-101 151-213 (457)
400 3o1i_D Periplasmic protein TOR 24.9 1.6E+02 0.0053 19.6 6.0 10 62-71 62-71 (304)
401 3r1i_A Short-chain type dehydr 24.8 1.6E+02 0.0055 19.7 6.5 54 32-85 49-103 (276)
402 3eiq_A Eukaryotic initiation f 24.8 1.8E+02 0.0062 20.3 9.0 92 20-115 86-189 (414)
403 1kte_A Thioltransferase; redox 24.7 95 0.0032 17.1 7.8 52 40-91 12-70 (105)
404 3m6m_D Sensory/regulatory prot 24.7 1.1E+02 0.0038 17.8 4.6 17 117-133 118-134 (143)
405 1yio_A Response regulatory pro 24.7 1.3E+02 0.0045 18.7 7.8 77 58-134 43-121 (208)
406 2hfv_A Hypothetical protein RP 24.7 1.1E+02 0.0037 17.7 4.0 33 41-73 24-56 (97)
407 2orw_A Thymidine kinase; TMTK, 24.5 1.1E+02 0.0036 19.4 4.0 29 21-49 13-41 (184)
408 3eyt_A Uncharacterized protein 24.4 1.2E+02 0.004 17.9 4.2 11 121-131 139-149 (158)
409 4imr_A 3-oxoacyl-(acyl-carrier 24.3 1.6E+02 0.0056 19.7 7.7 40 35-74 53-92 (275)
410 2qu7_A Putative transcriptiona 24.3 1.6E+02 0.0054 19.4 6.4 37 51-87 25-61 (288)
411 3bbl_A Regulatory protein of L 24.1 1.3E+02 0.0043 20.0 4.6 48 25-73 23-74 (287)
412 3fvw_A Putative NAD(P)H-depend 24.0 45 0.0015 21.3 2.2 30 107-136 65-97 (192)
413 1aw2_A Triosephosphate isomera 23.9 56 0.0019 22.5 2.7 12 110-121 162-173 (256)
414 3c3k_A Alanine racemase; struc 23.9 1.6E+02 0.0055 19.4 6.5 11 61-71 62-72 (285)
415 3h5i_A Response regulator/sens 23.8 1.1E+02 0.0038 17.5 10.4 94 38-134 28-123 (140)
416 2iks_A DNA-binding transcripti 23.8 1.6E+02 0.0056 19.5 6.7 37 51-87 38-74 (293)
417 3brq_A HTH-type transcriptiona 23.8 1.6E+02 0.0055 19.4 6.9 10 62-71 76-85 (296)
418 3p0r_A Azoreductase; structura 23.7 29 0.00098 22.7 1.2 31 107-137 90-123 (211)
419 2zay_A Response regulator rece 23.5 1.1E+02 0.0039 17.6 5.9 89 39-134 32-127 (147)
420 3eul_A Possible nitrate/nitrit 23.5 1.2E+02 0.004 17.7 6.7 73 60-135 58-135 (152)
421 2fep_A Catabolite control prot 23.4 1.7E+02 0.0057 19.4 6.7 13 59-71 68-80 (289)
422 2ht9_A Glutaredoxin-2; thiored 23.3 1.3E+02 0.0045 18.2 7.5 51 41-91 50-104 (146)
423 3ngf_A AP endonuclease, family 23.3 1.7E+02 0.0057 19.4 5.3 56 31-86 28-96 (269)
424 3fmp_B ATP-dependent RNA helic 23.1 2.2E+02 0.0075 20.7 6.7 88 20-115 140-241 (479)
425 2jgq_A Triosephosphate isomera 23.0 1.5E+02 0.005 20.0 4.6 12 110-121 151-162 (233)
426 2ioy_A Periplasmic sugar-bindi 23.0 1.7E+02 0.0058 19.3 6.6 35 37-72 29-66 (283)
427 3i5x_A ATP-dependent RNA helic 23.0 2.4E+02 0.0081 21.0 9.8 92 20-115 120-232 (563)
428 3ivr_A Putative long-chain-fat 22.8 2.3E+02 0.0078 20.8 9.0 71 24-98 40-111 (509)
429 3n53_A Response regulator rece 22.8 1.2E+02 0.004 17.4 10.3 91 40-134 27-121 (140)
430 3rhb_A ATGRXC5, glutaredoxin-C 22.8 1.1E+02 0.0038 17.2 7.6 33 41-73 20-53 (113)
431 2fn9_A Ribose ABC transporter, 22.7 1.7E+02 0.0058 19.3 6.7 37 36-73 29-68 (290)
432 3gl9_A Response regulator; bet 22.5 1.1E+02 0.0038 17.1 5.5 89 38-133 25-120 (122)
433 3gx1_A LIN1832 protein; APC633 22.3 1.3E+02 0.0043 18.1 3.9 34 38-72 60-94 (130)
434 1gud_A ALBP, D-allose-binding 22.1 1.8E+02 0.0061 19.3 6.1 10 37-46 29-38 (288)
435 3qst_A Triosephosphate isomera 22.1 2E+02 0.0067 19.7 5.4 18 104-121 155-173 (255)
436 3hs3_A Ribose operon repressor 22.1 1.8E+02 0.006 19.2 6.7 47 50-96 27-74 (277)
437 3ucx_A Short chain dehydrogena 21.7 1.8E+02 0.0062 19.2 8.0 53 32-84 28-81 (264)
438 3tha_A Tryptophan synthase alp 21.7 2E+02 0.0067 19.6 7.6 62 23-86 73-138 (252)
439 3clk_A Transcription regulator 21.7 1.8E+02 0.0061 19.2 5.0 48 25-73 23-75 (290)
440 3k9c_A Transcriptional regulat 21.7 1.8E+02 0.0063 19.2 5.1 37 36-73 38-76 (289)
441 3h8q_A Thioredoxin reductase 3 21.7 1.2E+02 0.0042 17.2 8.7 58 40-97 17-77 (114)
442 2rgy_A Transcriptional regulat 21.7 1.8E+02 0.0062 19.2 5.8 37 36-73 35-77 (290)
443 1t0b_A THUA-like protein; treh 21.6 1.5E+02 0.0052 20.0 4.5 9 41-49 9-17 (252)
444 3p45_A Caspase-6; protease, hu 21.6 1.7E+02 0.0058 18.8 7.4 46 41-87 46-105 (179)
445 3uoa_B Mucosa-associated lymph 21.5 2.4E+02 0.0083 20.6 7.1 38 49-87 26-63 (390)
446 1o5x_A TIM, triosephosphate is 21.5 1.8E+02 0.0062 19.8 4.8 12 110-121 158-169 (248)
447 1pjr_A PCRA; DNA repair, DNA r 21.4 2.3E+02 0.008 22.2 6.1 54 26-80 334-391 (724)
448 3s6d_A Putative triosephosphat 21.3 2.2E+02 0.0077 20.1 5.7 11 110-120 216-226 (310)
449 3rkr_A Short chain oxidoreduct 21.3 1.8E+02 0.0063 19.1 8.2 44 32-75 46-89 (262)
450 3c1r_A Glutaredoxin-1; oxidize 21.2 1.3E+02 0.0044 17.3 7.4 51 41-91 26-84 (118)
451 1qtn_A Caspase-8; apoptosis, d 21.2 1.6E+02 0.0056 18.5 8.2 37 49-86 54-90 (164)
452 2kok_A Arsenate reductase; bru 21.2 1.3E+02 0.0046 17.4 4.1 30 41-70 6-36 (120)
453 1kq3_A Glycerol dehydrogenase; 21.1 47 0.0016 23.9 1.9 62 23-87 28-93 (376)
454 3od5_A Caspase-6; caspase doma 21.1 2.1E+02 0.0071 19.7 7.4 46 41-87 23-82 (278)
455 2rjo_A Twin-arginine transloca 21.0 2E+02 0.0069 19.5 5.9 59 36-97 32-95 (332)
456 1dcf_A ETR1 protein; beta-alph 21.0 1.3E+02 0.0043 17.1 5.7 18 117-134 111-128 (136)
457 2qai_A V-type ATP synthase sub 21.0 1.4E+02 0.0047 17.6 5.6 45 58-102 14-60 (111)
458 3hcw_A Maltose operon transcri 20.7 1.9E+02 0.0066 19.2 6.6 66 52-117 150-228 (295)
459 1t3k_A Arath CDC25, dual-speci 20.6 1.1E+02 0.0039 18.6 3.5 38 37-74 83-130 (152)
460 3zvl_A Bifunctional polynucleo 20.6 2.5E+02 0.0085 20.3 5.9 45 26-70 90-144 (416)
461 1b9b_A TIM, protein (triosepho 20.4 78 0.0027 21.7 2.8 12 110-121 161-172 (255)
462 3gv0_A Transcriptional regulat 20.4 1.7E+02 0.0059 19.3 4.7 70 24-97 24-96 (288)
463 3gaf_A 7-alpha-hydroxysteroid 20.4 1.9E+02 0.0066 19.0 7.4 44 32-75 29-72 (256)
464 3qiv_A Short-chain dehydrogena 20.3 1.9E+02 0.0064 18.8 8.2 54 31-84 25-79 (253)
465 3th6_A Triosephosphate isomera 20.3 2.1E+02 0.0073 19.5 5.8 12 110-121 158-169 (249)
466 2fpr_A Histidine biosynthesis 20.2 1.6E+02 0.0056 18.1 5.3 40 27-66 46-98 (176)
467 2vxn_A Triosephosphate isomera 20.2 1.6E+02 0.0055 20.1 4.3 12 110-121 161-172 (251)
468 1mvo_A PHOP response regulator 20.1 1.3E+02 0.0045 16.9 7.8 90 38-134 26-120 (136)
469 3fni_A Putative diflavin flavo 20.1 1.6E+02 0.0055 18.0 5.4 15 52-66 22-36 (159)
No 1
>1z5z_A Helicase of the SNF2/RAD54 family; hydrolase, recombination, hydrolase-recombination complex; 2.00A {Sulfolobus solfataricus} SCOP: c.37.1.19
Probab=100.00 E-value=1.2e-34 Score=204.87 Aligned_cols=137 Identities=33% Similarity=0.475 Sum_probs=109.4
Q ss_pred ccccccccCCCCCC-CcccccCchHHHHHHHHHHhhhCCCeEEEEeccHHHHHHHHHHHhhc-CCeEEEEeCCCChHHHH
Q psy2046 2 ALKQTLDCAKYKVP-DDLVVESGKLKKLDEILPDLKKNGHRVLIFSQFIFVLDILGHYMDIR-GWRHLRLDGATQVSSRQ 79 (138)
Q Consensus 2 ~l~~~~~~~~~~~~-~~~~~~s~K~~~l~~ll~~~~~~~~k~iif~~~~~~~~~l~~~l~~~-g~~~~~i~g~~~~~~R~ 79 (138)
.|+++|+++..... ......++|+..+.+++..+...++|+|||+++...++.|+..|... |+++..++|++++.+|.
T Consensus 74 ~Lrq~~~hP~l~~~~~~~~~~s~K~~~L~~ll~~~~~~~~kvlIFs~~~~~~~~l~~~L~~~~g~~~~~l~G~~~~~~R~ 153 (271)
T 1z5z_A 74 KLKQIVDHPALLKGGEQSVRRSGKMIRTMEIIEEALDEGDKIAIFTQFVDMGKIIRNIIEKELNTEVPFLYGELSKKERD 153 (271)
T ss_dssp HHHHHTTCTHHHHCSCCCSTTCHHHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHHHHHHHCSCCCEECTTSCHHHHH
T ss_pred HHHHHcCCHHHhcCCccccccCHHHHHHHHHHHHHHhCCCeEEEEeccHHHHHHHHHHHHHhcCCcEEEEECCCCHHHHH
Confidence 45666655433211 13466899999999999998888999999999999999999999885 99999999999999999
Q ss_pred HHHHHHhcCCCceEEEEeccccccccCcCccCEEEEeCCCCCccchhHHHHHHhhcCCC
Q psy2046 80 ELIDEYNRDQDLFAFLLSTKAGGLGINLTAADTVIIHDVDFNPYNDKQAEDRCHRVGQT 138 (138)
Q Consensus 80 ~~~~~F~~~~~~~vll~~~~~~~~Gl~l~~~~~vi~~~~~~~~~~~~Q~~gR~~R~GQt 138 (138)
+++++|++++...++|++|+++|+|+|++.|++||+||+||||..+.||+||+||+||+
T Consensus 154 ~~i~~F~~~~~~~v~L~st~~~g~Glnl~~a~~VI~~d~~wnp~~~~Q~~gR~~R~Gq~ 212 (271)
T 1z5z_A 154 DIISKFQNNPSVKFIVLSVKAGGFGINLTSANRVIHFDRWWNPAVEDQATDRVYRIGQT 212 (271)
T ss_dssp HHHHHHHHCTTCCEEEEECCTTCCCCCCTTCSEEEECSCCSCTTTC-------------
T ss_pred HHHHHhcCCCCCCEEEEehhhhcCCcCcccCCEEEEECCCCChhHHHHHHHhccccCCC
Confidence 99999999867778999999999999999999999999999999999999999999996
No 2
>3mwy_W Chromo domain-containing protein 1; SWI2/SNF2 ATPase, double chromodomains, hydrolase; HET: ATG; 3.70A {Saccharomyces cerevisiae}
Probab=99.96 E-value=1.4e-29 Score=200.73 Aligned_cols=120 Identities=54% Similarity=0.870 Sum_probs=113.4
Q ss_pred cccCchHHHHHHHHHHhhhCCCeEEEEeccHHHHHHHHHHHhhcCCeEEEEeCCCChHHHHHHHHHHhcCCC-ceEEEEe
Q psy2046 19 VVESGKLKKLDEILPDLKKNGHRVLIFSQFIFVLDILGHYMDIRGWRHLRLDGATQVSSRQELIDEYNRDQD-LFAFLLS 97 (138)
Q Consensus 19 ~~~s~K~~~l~~ll~~~~~~~~k~iif~~~~~~~~~l~~~l~~~g~~~~~i~g~~~~~~R~~~~~~F~~~~~-~~vll~~ 97 (138)
...|+|+..+.+++..+...++|+||||++..+++.|+.+|...|+++..++|+++..+|.+++++|++++. ..++|++
T Consensus 552 ~~~s~K~~~L~~lL~~~~~~g~kvLIFsq~~~~ld~L~~~L~~~g~~~~~i~G~~~~~eR~~~i~~F~~~~~~~~v~LlS 631 (800)
T 3mwy_W 552 IMSSGKMVLLDQLLTRLKKDGHRVLIFSQMVRMLDILGDYLSIKGINFQRLDGTVPSAQRRISIDHFNSPDSNDFVFLLS 631 (800)
T ss_dssp HHTCHHHHHHHHHHHHHTTTTCCEEEEESCHHHHHHHHHHHHHHTCCCEEESTTSCHHHHHHHHHTTSSTTCSCCCEEEE
T ss_pred hhcChHHHHHHHHHHHHhhCCCeEEEEechHHHHHHHHHHHHhCCCCEEEEeCCCCHHHHHHHHHHhhCCCCCceEEEEe
Confidence 457899999999999998889999999999999999999999999999999999999999999999997543 3479999
Q ss_pred ccccccccCcCccCEEEEeCCCCCccchhHHHHHHhhcCCC
Q psy2046 98 TKAGGLGINLTAADTVIIHDVDFNPYNDKQAEDRCHRVGQT 138 (138)
Q Consensus 98 ~~~~~~Gl~l~~~~~vi~~~~~~~~~~~~Q~~gR~~R~GQt 138 (138)
|+++|+|+||+.|++||++|++|||..+.||+||+||+||+
T Consensus 632 t~agg~GlNL~~a~~VI~~D~~wnp~~~~Qa~gR~~RiGQ~ 672 (800)
T 3mwy_W 632 TRAGGLGINLMTADTVVIFDSDWNPQADLQAMARAHRIGQK 672 (800)
T ss_dssp HHHHTTTCCCTTCCEEEESSCCSCSHHHHHHHTTTSCSSCC
T ss_pred cccccCCCCccccceEEEecCCCChhhHHHHHHHHHhcCCC
Confidence 99999999999999999999999999999999999999996
No 3
>1z3i_X Similar to RAD54-like; recombination ATPase helicase, recombination-DNA binding COM; 3.00A {Danio rerio} SCOP: c.37.1.19 c.37.1.19
Probab=99.96 E-value=4e-28 Score=188.71 Aligned_cols=120 Identities=35% Similarity=0.588 Sum_probs=111.1
Q ss_pred cccCchHHHHHHHHHHhhh-CCCeEEEEeccHHHHHHHHHHHhhcCCeEEEEeCCCChHHHHHHHHHHhcCCC-ceEEEE
Q psy2046 19 VVESGKLKKLDEILPDLKK-NGHRVLIFSQFIFVLDILGHYMDIRGWRHLRLDGATQVSSRQELIDEYNRDQD-LFAFLL 96 (138)
Q Consensus 19 ~~~s~K~~~l~~ll~~~~~-~~~k~iif~~~~~~~~~l~~~l~~~g~~~~~i~g~~~~~~R~~~~~~F~~~~~-~~vll~ 96 (138)
...++|+..+..++..+.. .++|+|||+++..+++.|+..|...|+++..+||+++..+|.+++++|++++. ..++|+
T Consensus 395 ~~~s~K~~~l~~ll~~~~~~~~~k~lIFs~~~~~~~~l~~~l~~~g~~~~~l~G~~~~~~R~~~i~~F~~~~~~~~v~L~ 474 (644)
T 1z3i_X 395 PQLSGKMLVLDYILAMTRTTTSDKVVLVSNYTQTLDLFEKLCRNRRYLYVRLDGTMSIKKRAKIVERFNNPSSPEFIFML 474 (644)
T ss_dssp GGGSHHHHHHHHHHHHHHHHCCCEEEEEESCHHHHHHHHHHHHHHTCCEEEECSSCCHHHHHHHHHHHHSTTCCCCEEEE
T ss_pred cccChHHHHHHHHHHHHhhcCCCEEEEEEccHHHHHHHHHHHHHCCCCEEEEeCCCCHHHHHHHHHHhcCCCCCcEEEEE
Confidence 3468999999999887653 57899999999999999999999999999999999999999999999998765 347999
Q ss_pred eccccccccCcCccCEEEEeCCCCCccchhHHHHHHhhcCCC
Q psy2046 97 STKAGGLGINLTAADTVIIHDVDFNPYNDKQAEDRCHRVGQT 138 (138)
Q Consensus 97 ~~~~~~~Gl~l~~~~~vi~~~~~~~~~~~~Q~~gR~~R~GQt 138 (138)
+++++|+|+|++.|++||++|++|||..+.||+||+||+||+
T Consensus 475 st~a~g~Glnl~~a~~Vi~~d~~wnp~~~~Qa~gR~~R~Gq~ 516 (644)
T 1z3i_X 475 SSKAGGCGLNLIGANRLVMFDPDWNPANDEQAMARVWRDGQK 516 (644)
T ss_dssp EGGGSCTTCCCTTEEEEEECSCCSSHHHHHHHHTTSSSTTCC
T ss_pred ecccccCCcccccCCEEEEECCCCCccHHHHHHHhhhhcCCC
Confidence 999999999999999999999999999999999999999996
No 4
>1z63_A Helicase of the SNF2/RAD54 hamily; protein-DNA complex, hydrolase/DNA complex complex; 3.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 c.37.1.19 PDB: 1z6a_A
Probab=99.95 E-value=2.7e-28 Score=184.37 Aligned_cols=121 Identities=34% Similarity=0.504 Sum_probs=109.9
Q ss_pred ccccCchHHHHHHHHHHhhhCCCeEEEEeccHHHHHHHHHHHhhc-CCeEEEEeCCCChHHHHHHHHHHhcCCCceEEEE
Q psy2046 18 LVVESGKLKKLDEILPDLKKNGHRVLIFSQFIFVLDILGHYMDIR-GWRHLRLDGATQVSSRQELIDEYNRDQDLFAFLL 96 (138)
Q Consensus 18 ~~~~s~K~~~l~~ll~~~~~~~~k~iif~~~~~~~~~l~~~l~~~-g~~~~~i~g~~~~~~R~~~~~~F~~~~~~~vll~ 96 (138)
....++|+..+.+++.+....++|+|||+++...++.+...|... |+++..+||+++..+|.+++++|++++...++|+
T Consensus 320 ~~~~s~K~~~l~~~l~~~~~~~~k~lvF~~~~~~~~~l~~~l~~~~~~~~~~~~g~~~~~~R~~~~~~F~~~~~~~vil~ 399 (500)
T 1z63_A 320 SVRRSGKMIRTMEIIEEALDEGDKIAIFTQFVDMGKIIRNIIEKELNTEVPFLYGELSKKERDDIISKFQNNPSVKFIVL 399 (500)
T ss_dssp CSTTCHHHHHHHHHHHHHHTTTCCEEEECSCHHHHHHHHHHHHHHHTCCCCEEETTSCHHHHHHHHHHHHHCTTCCCCEE
T ss_pred hhhcchhHHHHHHHHHHHHccCCcEEEEEehHHHHHHHHHHHHHhhCCCeEEEECCCCHHHHHHHHHHhcCCCCCCEEEE
Confidence 345689999999999998888999999999999999999999885 9999999999999999999999998866677899
Q ss_pred eccccccccCcCccCEEEEeCCCCCccchhHHHHHHhhcCCC
Q psy2046 97 STKAGGLGINLTAADTVIIHDVDFNPYNDKQAEDRCHRVGQT 138 (138)
Q Consensus 97 ~~~~~~~Gl~l~~~~~vi~~~~~~~~~~~~Q~~gR~~R~GQt 138 (138)
+++++++|+|++.+++||++|+||||..+.||+||++|+||+
T Consensus 400 st~~~~~Glnl~~~~~vi~~d~~~~~~~~~Q~~gR~~R~Gq~ 441 (500)
T 1z63_A 400 SVKAGGFGINLTSANRVIHFDRWWNPAVEDQATDRVYRIGQT 441 (500)
T ss_dssp ECCCC-CCCCCTTCSEEEESSCCSCC---CHHHHTTTTTTTT
T ss_pred ecccccCCCchhhCCEEEEeCCCCCcchHHHHHHHHHHcCCC
Confidence 999999999999999999999999999999999999999996
No 5
>1t5i_A C_terminal domain of A probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; 1.90A {Homo sapiens} SCOP: c.37.1.19
Probab=99.95 E-value=1.4e-27 Score=158.34 Aligned_cols=116 Identities=16% Similarity=0.198 Sum_probs=106.7
Q ss_pred cccCchHHHHHHHHHHhhhCCCeEEEEeccHHHHHHHHHHHhhcCCeEEEEeCCCChHHHHHHHHHHhcCCCceEEEEec
Q psy2046 19 VVESGKLKKLDEILPDLKKNGHRVLIFSQFIFVLDILGHYMDIRGWRHLRLDGATQVSSRQELIDEYNRDQDLFAFLLST 98 (138)
Q Consensus 19 ~~~s~K~~~l~~ll~~~~~~~~k~iif~~~~~~~~~l~~~l~~~g~~~~~i~g~~~~~~R~~~~~~F~~~~~~~vll~~~ 98 (138)
...+.|+..|.+++... .+.++|||+++...++.+...|...|+++..+||++++.+|.++++.|++++.. +|++|
T Consensus 13 ~~~~~K~~~L~~ll~~~--~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~hg~~~~~~r~~~~~~f~~g~~~--vLvaT 88 (172)
T 1t5i_A 13 LKDNEKNRKLFDLLDVL--EFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKDFQRR--ILVAT 88 (172)
T ss_dssp CCGGGHHHHHHHHHHHS--CCSSEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTSCS--EEEES
T ss_pred CChHHHHHHHHHHHHhC--CCCcEEEEECCHHHHHHHHHHHHhcCCCEEEEECCCCHHHHHHHHHHHHCCCCc--EEEEC
Confidence 34567999999999754 567999999999999999999999999999999999999999999999988654 77889
Q ss_pred cccccccCcCccCEEEEeCCCCCccchhHHHHHHhhcCCC
Q psy2046 99 KAGGLGINLTAADTVIIHDVDFNPYNDKQAEDRCHRVGQT 138 (138)
Q Consensus 99 ~~~~~Gl~l~~~~~vi~~~~~~~~~~~~Q~~gR~~R~GQt 138 (138)
+++++|+|++++++||++|+||++..|.|++||++|.||+
T Consensus 89 ~~~~~Gldi~~~~~Vi~~d~p~~~~~~~qr~GR~~R~g~~ 128 (172)
T 1t5i_A 89 NLFGRGMDIERVNIAFNYDMPEDSDTYLHRVARAGRFGTK 128 (172)
T ss_dssp SCCSTTCCGGGCSEEEESSCCSSHHHHHHHHHHHTGGGCC
T ss_pred CchhcCcchhhCCEEEEECCCCCHHHHHHHhcccccCCCC
Confidence 9999999999999999999999999999999999999974
No 6
>2hjv_A ATP-dependent RNA helicase DBPA; parallel alpha-beta, hydrolase; 1.95A {Bacillus subtilis}
Probab=99.95 E-value=2e-27 Score=156.35 Aligned_cols=116 Identities=22% Similarity=0.339 Sum_probs=106.8
Q ss_pred cccCchHHHHHHHHHHhhhCCCeEEEEeccHHHHHHHHHHHhhcCCeEEEEeCCCChHHHHHHHHHHhcCCCceEEEEec
Q psy2046 19 VVESGKLKKLDEILPDLKKNGHRVLIFSQFIFVLDILGHYMDIRGWRHLRLDGATQVSSRQELIDEYNRDQDLFAFLLST 98 (138)
Q Consensus 19 ~~~s~K~~~l~~ll~~~~~~~~k~iif~~~~~~~~~l~~~l~~~g~~~~~i~g~~~~~~R~~~~~~F~~~~~~~vll~~~ 98 (138)
...+.|+..|.+++.. ..+.++|||+++...++.+...|...|+++..+||++++.+|..++++|++++.. +|++|
T Consensus 17 ~~~~~K~~~L~~ll~~--~~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~hg~~~~~~r~~~~~~f~~g~~~--vlv~T 92 (163)
T 2hjv_A 17 VREENKFSLLKDVLMT--ENPDSCIIFCRTKEHVNQLTDELDDLGYPCDKIHGGMIQEDRFDVMNEFKRGEYR--YLVAT 92 (163)
T ss_dssp CCGGGHHHHHHHHHHH--HCCSSEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTSCS--EEEEC
T ss_pred CChHHHHHHHHHHHHh--cCCCcEEEEECCHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHHcCCCe--EEEEC
Confidence 4467899999999875 3567999999999999999999999999999999999999999999999988654 77889
Q ss_pred cccccccCcCccCEEEEeCCCCCccchhHHHHHHhhcCCC
Q psy2046 99 KAGGLGINLTAADTVIIHDVDFNPYNDKQAEDRCHRVGQT 138 (138)
Q Consensus 99 ~~~~~Gl~l~~~~~vi~~~~~~~~~~~~Q~~gR~~R~GQt 138 (138)
+++++|+|++++++||++++||++..|.|++||++|.||+
T Consensus 93 ~~~~~Gld~~~~~~Vi~~~~p~~~~~~~qr~GR~~R~g~~ 132 (163)
T 2hjv_A 93 DVAARGIDIENISLVINYDLPLEKESYVHRTGRTGRAGNK 132 (163)
T ss_dssp GGGTTTCCCSCCSEEEESSCCSSHHHHHHHTTTSSCTTCC
T ss_pred ChhhcCCchhcCCEEEEeCCCCCHHHHHHhccccCcCCCC
Confidence 9999999999999999999999999999999999999974
No 7
>2jgn_A DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosphorylation, nucleotide-binding, hydrolase, RNA-binding, ATP-binding, DNA-binding, nuclear protein; 1.91A {Homo sapiens}
Probab=99.95 E-value=1.3e-27 Score=160.28 Aligned_cols=118 Identities=20% Similarity=0.273 Sum_probs=93.9
Q ss_pred ccccCchHHHHHHHHHHhhhCCCeEEEEeccHHHHHHHHHHHhhcCCeEEEEeCCCChHHHHHHHHHHhcCCCceEEEEe
Q psy2046 18 LVVESGKLKKLDEILPDLKKNGHRVLIFSQFIFVLDILGHYMDIRGWRHLRLDGATQVSSRQELIDEYNRDQDLFAFLLS 97 (138)
Q Consensus 18 ~~~~s~K~~~l~~ll~~~~~~~~k~iif~~~~~~~~~l~~~l~~~g~~~~~i~g~~~~~~R~~~~~~F~~~~~~~vll~~ 97 (138)
.+..+.|+..|.+++... ..+.++|||+++...++.+...|...|+++..+||++++.+|.+++++|++++.. +|++
T Consensus 26 ~v~~~~K~~~L~~ll~~~-~~~~k~lVF~~~~~~~~~l~~~L~~~g~~~~~lhg~~~~~~r~~~~~~f~~g~~~--vLva 102 (185)
T 2jgn_A 26 WVEESDKRSFLLDLLNAT-GKDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFRSGKSP--ILVA 102 (185)
T ss_dssp ECCGGGHHHHHHHHHHHC--CCSCEEEEESCHHHHHHHHHHHHHTTCCEEEEC--------CHHHHHHHHTSSS--EEEE
T ss_pred EeCcHHHHHHHHHHHHhc-CCCCeEEEEECCHHHHHHHHHHHHHcCCceEEEeCCCCHHHHHHHHHHHHcCCCe--EEEE
Confidence 445678999999999863 3467999999999999999999999999999999999999999999999988654 7788
Q ss_pred ccccccccCcCccCEEEEeCCCCCccchhHHHHHHhhcCCC
Q psy2046 98 TKAGGLGINLTAADTVIIHDVDFNPYNDKQAEDRCHRVGQT 138 (138)
Q Consensus 98 ~~~~~~Gl~l~~~~~vi~~~~~~~~~~~~Q~~gR~~R~GQt 138 (138)
|+++++|+|++++++||++|+||++..|.|++||++|.||+
T Consensus 103 T~~~~~Gldi~~~~~VI~~d~p~s~~~~~Qr~GR~~R~g~~ 143 (185)
T 2jgn_A 103 TAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNL 143 (185)
T ss_dssp EC------CCCSBSEEEESSCCSSHHHHHHHHTTBCCTTSC
T ss_pred cChhhcCCCcccCCEEEEeCCCCCHHHHHHHccccCCCCCC
Confidence 89999999999999999999999999999999999999974
No 8
>2p6n_A ATP-dependent RNA helicase DDX41; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; 2.60A {Homo sapiens}
Probab=99.94 E-value=5.4e-27 Score=158.02 Aligned_cols=115 Identities=23% Similarity=0.302 Sum_probs=102.4
Q ss_pred cccCchHHHHHHHHHHhhhCCCeEEEEeccHHHHHHHHHHHhhcCCeEEEEeCCCChHHHHHHHHHHhcCCCceEEEEec
Q psy2046 19 VVESGKLKKLDEILPDLKKNGHRVLIFSQFIFVLDILGHYMDIRGWRHLRLDGATQVSSRQELIDEYNRDQDLFAFLLST 98 (138)
Q Consensus 19 ~~~s~K~~~l~~ll~~~~~~~~k~iif~~~~~~~~~l~~~l~~~g~~~~~i~g~~~~~~R~~~~~~F~~~~~~~vll~~~ 98 (138)
...+.|+..|.+++.. .+.++|||+++...++.+...|...|+++..+||++++.+|.+++++|++++.. +|++|
T Consensus 37 ~~~~~K~~~L~~~l~~---~~~~~lVF~~~~~~~~~l~~~L~~~g~~~~~lhg~~~~~~R~~~l~~F~~g~~~--vLvaT 111 (191)
T 2p6n_A 37 VKEEAKMVYLLECLQK---TPPPVLIFAEKKADVDAIHEYLLLKGVEAVAIHGGKDQEERTKAIEAFREGKKD--VLVAT 111 (191)
T ss_dssp CCGGGHHHHHHHHHTT---SCSCEEEECSCHHHHHHHHHHHHHHTCCEEEECTTSCHHHHHHHHHHHHHTSCS--EEEEC
T ss_pred cChHHHHHHHHHHHHh---CCCCEEEEECCHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhcCCCE--EEEEc
Confidence 4456788888888753 456899999999999999999999999999999999999999999999988654 77889
Q ss_pred cccccccCcCccCEEEEeCCCCCccchhHHHHHHhhcCCC
Q psy2046 99 KAGGLGINLTAADTVIIHDVDFNPYNDKQAEDRCHRVGQT 138 (138)
Q Consensus 99 ~~~~~Gl~l~~~~~vi~~~~~~~~~~~~Q~~gR~~R~GQt 138 (138)
+++++|+|++++++||++|+||++..|.||+||++|.||+
T Consensus 112 ~~~~~Gldi~~v~~VI~~d~p~~~~~~~qr~GR~gR~g~~ 151 (191)
T 2p6n_A 112 DVASKGLDFPAIQHVINYDMPEEIENYVHRIGRTGCSGNT 151 (191)
T ss_dssp HHHHTTCCCCCCSEEEESSCCSSHHHHHHHHTTSCC---C
T ss_pred CchhcCCCcccCCEEEEeCCCCCHHHHHHHhCccccCCCC
Confidence 9999999999999999999999999999999999999974
No 9
>1fuk_A Eukaryotic initiation factor 4A; helicase, DEAD-box protein, translation; 1.75A {Saccharomyces cerevisiae} SCOP: c.37.1.19
Probab=99.94 E-value=1.7e-26 Score=152.10 Aligned_cols=114 Identities=18% Similarity=0.213 Sum_probs=100.7
Q ss_pred cCc-hHHHHHHHHHHhhhCCCeEEEEeccHHHHHHHHHHHhhcCCeEEEEeCCCChHHHHHHHHHHhcCCCceEEEEecc
Q psy2046 21 ESG-KLKKLDEILPDLKKNGHRVLIFSQFIFVLDILGHYMDIRGWRHLRLDGATQVSSRQELIDEYNRDQDLFAFLLSTK 99 (138)
Q Consensus 21 ~s~-K~~~l~~ll~~~~~~~~k~iif~~~~~~~~~l~~~l~~~g~~~~~i~g~~~~~~R~~~~~~F~~~~~~~vll~~~~ 99 (138)
... |+..|.+++... .+.++|||+++...++.+...|...|+.+..+||++++.+|.++++.|++++.. +|++|+
T Consensus 13 ~~~~K~~~l~~ll~~~--~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~--vlv~T~ 88 (165)
T 1fuk_A 13 EEEYKYECLTDLYDSI--SVTQAVIFCNTRRKVEELTTKLRNDKFTVSAIYSDLPQQERDTIMKEFRSGSSR--ILISTD 88 (165)
T ss_dssp SGGGHHHHHHHHHHHT--TCSCEEEEESSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTSCS--EEEEEG
T ss_pred cchhHHHHHHHHHHhC--CCCCEEEEECCHHHHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHHHcCCCE--EEEEcC
Confidence 344 999999998864 567999999999999999999999999999999999999999999999988654 777889
Q ss_pred ccccccCcCccCEEEEeCCCCCccchhHHHHHHhhcCCC
Q psy2046 100 AGGLGINLTAADTVIIHDVDFNPYNDKQAEDRCHRVGQT 138 (138)
Q Consensus 100 ~~~~Gl~l~~~~~vi~~~~~~~~~~~~Q~~gR~~R~GQt 138 (138)
++++|+|++++++||++++||++..|.|++||++|.||+
T Consensus 89 ~~~~G~d~~~~~~Vi~~~~p~~~~~~~qr~GR~gR~g~~ 127 (165)
T 1fuk_A 89 LLARGIDVQQVSLVINYDLPANKENYIHRIGRGGRFGRK 127 (165)
T ss_dssp GGTTTCCCCSCSEEEESSCCSSGGGGGGSSCSCC-----
T ss_pred hhhcCCCcccCCEEEEeCCCCCHHHHHHHhcccccCCCC
Confidence 999999999999999999999999999999999999974
No 10
>3eaq_A Heat resistant RNA dependent ATPase; DEAD box RNA helicase, dimer, ATP-binding, helicase, hydrolase, nucleotide-binding; 2.30A {Thermus thermophilus} PDB: 3ear_A 3eas_A
Probab=99.93 E-value=1.4e-25 Score=153.34 Aligned_cols=115 Identities=16% Similarity=0.246 Sum_probs=104.9
Q ss_pred ccCchHHHHHHHHHHhhhCCCeEEEEeccHHHHHHHHHHHhhcCCeEEEEeCCCChHHHHHHHHHHhcCCCceEEEEecc
Q psy2046 20 VESGKLKKLDEILPDLKKNGHRVLIFSQFIFVLDILGHYMDIRGWRHLRLDGATQVSSRQELIDEYNRDQDLFAFLLSTK 99 (138)
Q Consensus 20 ~~s~K~~~l~~ll~~~~~~~~k~iif~~~~~~~~~l~~~l~~~g~~~~~i~g~~~~~~R~~~~~~F~~~~~~~vll~~~~ 99 (138)
..+.|+..+.+++.. ..+.++|||+++...++.+...|...|+.+..+||++++.+|.++++.|+++... +|++|+
T Consensus 14 ~~~~k~~~l~~ll~~--~~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~lhg~~~~~~r~~~~~~f~~g~~~--vlvaT~ 89 (212)
T 3eaq_A 14 PVRGRLEVLSDLLYV--ASPDRAMVFTRTKAETEEIAQGLLRLGHPAQALHGDLSQGERERVLGAFRQGEVR--VLVATD 89 (212)
T ss_dssp CTTSHHHHHHHHHHH--HCCSCEEEECSSHHHHHHHHHHHHHHTCCEEEECSSSCHHHHHHHHHHHHSSSCC--EEEECT
T ss_pred CHHHHHHHHHHHHHh--CCCCeEEEEeCCHHHHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHHHCCCCe--EEEecC
Confidence 356899999999974 4567999999999999999999999999999999999999999999999988544 788899
Q ss_pred ccccccCcCccCEEEEeCCCCCccchhHHHHHHhhcCCC
Q psy2046 100 AGGLGINLTAADTVIIHDVDFNPYNDKQAEDRCHRVGQT 138 (138)
Q Consensus 100 ~~~~Gl~l~~~~~vi~~~~~~~~~~~~Q~~gR~~R~GQt 138 (138)
++++|+|++++++||++++||++..|.||+||++|.|+.
T Consensus 90 ~~~~Gidi~~v~~Vi~~~~p~~~~~~~qr~GR~gR~g~~ 128 (212)
T 3eaq_A 90 VAARGLDIPQVDLVVHYRLPDRAEAYQHRSGRTGRAGRG 128 (212)
T ss_dssp TTTCSSSCCCBSEEEESSCCSSHHHHHHHHTTBCCCC--
T ss_pred hhhcCCCCccCcEEEECCCCcCHHHHHHHhcccCCCCCC
Confidence 999999999999999999999999999999999999963
No 11
>2rb4_A ATP-dependent RNA helicase DDX25; rossmann fold, structural genomics, structural consortium, SGC, alternative initiation, ATP-binding, devel protein; 2.80A {Homo sapiens}
Probab=99.93 E-value=1.7e-25 Score=148.62 Aligned_cols=112 Identities=21% Similarity=0.230 Sum_probs=97.9
Q ss_pred chHHHHHHHHHHhhhCCCeEEEEeccHHHHHHHHHHHhhcCCeEEEEeCCCChHHHHHHHHHHhcCCCceEEEEeccccc
Q psy2046 23 GKLKKLDEILPDLKKNGHRVLIFSQFIFVLDILGHYMDIRGWRHLRLDGATQVSSRQELIDEYNRDQDLFAFLLSTKAGG 102 (138)
Q Consensus 23 ~K~~~l~~ll~~~~~~~~k~iif~~~~~~~~~l~~~l~~~g~~~~~i~g~~~~~~R~~~~~~F~~~~~~~vll~~~~~~~ 102 (138)
.|+..|.+++... .+.++|||+++...++.+...|...|+.+..+||++++.+|.++++.|++++.. +|++|++++
T Consensus 20 ~K~~~L~~ll~~~--~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~g~~~~~~R~~~~~~f~~g~~~--vLvaT~~~~ 95 (175)
T 2rb4_A 20 DKYQALCNIYGSI--TIGQAIIFCQTRRNAKWLTVEMIQDGHQVSLLSGELTVEQRASIIQRFRDGKEK--VLITTNVCA 95 (175)
T ss_dssp HHHHHHHHHHTTS--CCSEEEEECSCHHHHHHHHHHHHTTTCCEEEECSSCCHHHHHHHHHHHHTTSCS--EEEECCSCC
T ss_pred hHHHHHHHHHHhC--CCCCEEEEECCHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHHcCCCe--EEEEecchh
Confidence 4888888888653 457999999999999999999999999999999999999999999999988654 788899999
Q ss_pred cccCcCccCEEEEeCCC------CCccchhHHHHHHhhcCCC
Q psy2046 103 LGINLTAADTVIIHDVD------FNPYNDKQAEDRCHRVGQT 138 (138)
Q Consensus 103 ~Gl~l~~~~~vi~~~~~------~~~~~~~Q~~gR~~R~GQt 138 (138)
+|+|++.+++||++|+| +++..|.||+||++|.|+.
T Consensus 96 ~Gid~~~~~~Vi~~d~p~~~~~~~~~~~~~qr~GR~gR~g~~ 137 (175)
T 2rb4_A 96 RGIDVKQVTIVVNFDLPVKQGEEPDYETYLHRIGRTGRFGKK 137 (175)
T ss_dssp TTTCCTTEEEEEESSCCC--CCSCCHHHHHHHHCBC----CC
T ss_pred cCCCcccCCEEEEeCCCCCccccCCHHHHHHHhcccccCCCC
Confidence 99999999999999999 6678899999999999864
No 12
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=99.92 E-value=1.6e-25 Score=166.74 Aligned_cols=116 Identities=19% Similarity=0.305 Sum_probs=105.4
Q ss_pred ccCchHHHHHHHHHHhh--hCCCeEEEEeccHHHHHHHHHHHhhcCCeEEEEeC--------CCChHHHHHHHHHHhcCC
Q psy2046 20 VESGKLKKLDEILPDLK--KNGHRVLIFSQFIFVLDILGHYMDIRGWRHLRLDG--------ATQVSSRQELIDEYNRDQ 89 (138)
Q Consensus 20 ~~s~K~~~l~~ll~~~~--~~~~k~iif~~~~~~~~~l~~~l~~~g~~~~~i~g--------~~~~~~R~~~~~~F~~~~ 89 (138)
..++|+..+.+++.... ..+.++|||+++...++.+.+.|...|+++..+|| +++..+|.+++++|++++
T Consensus 340 ~~~~k~~~l~~~l~~~~~~~~~~k~lVF~~~~~~~~~l~~~L~~~~~~~~~~~g~~~~~~~~~~~~~~r~~~~~~F~~~~ 419 (494)
T 1wp9_A 340 LDHPKMDKLKEIIREQLQRKQNSKIIVFTNYRETAKKIVNELVKDGIKAKRFVGQASKENDRGLSQREQKLILDEFARGE 419 (494)
T ss_dssp CSCHHHHHHHHHHHHHHHHCTTCCEEEECSCHHHHHHHHHHHHHTTCCEEEECCSSCC-------CCHHHHHHHHHHHTS
T ss_pred CCChHHHHHHHHHHHHhccCCCCeEEEEEccHHHHHHHHHHHHHcCCCcEEEeccccccccccCCHHHHHHHHHHHhcCC
Confidence 57789999999998865 46789999999999999999999999999999999 999999999999999886
Q ss_pred CceEEEEeccccccccCcCccCEEEEeCCCCCccchhHHHHHHhhcCC
Q psy2046 90 DLFAFLLSTKAGGLGINLTAADTVIIHDVDFNPYNDKQAEDRCHRVGQ 137 (138)
Q Consensus 90 ~~~vll~~~~~~~~Gl~l~~~~~vi~~~~~~~~~~~~Q~~gR~~R~GQ 137 (138)
.. +|++|+++++|+|++.+++||++|+|||+..+.||+||+||.||
T Consensus 420 ~~--vLv~T~~~~~Gldl~~~~~Vi~~d~~~~~~~~~Qr~GR~~R~g~ 465 (494)
T 1wp9_A 420 FN--VLVATSVGEEGLDVPEVDLVVFYEPVPSAIRSIQRRGRTGRHMP 465 (494)
T ss_dssp CS--EEEECGGGGGGGGSTTCCEEEESSCCHHHHHHHHHHTTSCSCCC
T ss_pred ce--EEEECCccccCCCchhCCEEEEeCCCCCHHHHHHHHhhccCCCC
Confidence 43 68889999999999999999999999999999999999999997
No 13
>2yjt_D ATP-dependent RNA helicase SRMB, regulator of ribonuclease activity A; hydrolase inhibitor-hydrolase complex, DEAD box RNA helicase; 2.90A {Escherichia coli}
Probab=99.87 E-value=3.7e-27 Score=156.01 Aligned_cols=113 Identities=19% Similarity=0.234 Sum_probs=103.7
Q ss_pred CchHHHHHHHHHHhhhCCCeEEEEeccHHHHHHHHHHHhhcCCeEEEEeCCCChHHHHHHHHHHhcCCCceEEEEecccc
Q psy2046 22 SGKLKKLDEILPDLKKNGHRVLIFSQFIFVLDILGHYMDIRGWRHLRLDGATQVSSRQELIDEYNRDQDLFAFLLSTKAG 101 (138)
Q Consensus 22 s~K~~~l~~ll~~~~~~~~k~iif~~~~~~~~~l~~~l~~~g~~~~~i~g~~~~~~R~~~~~~F~~~~~~~vll~~~~~~ 101 (138)
+.|+..|.+++.. ..+.++|||+++...++.+...|+..|+.+..+||++++.+|.+++++|++++.. +|++|+++
T Consensus 15 ~~k~~~l~~ll~~--~~~~~~iVF~~~~~~~~~l~~~L~~~~~~~~~~~g~~~~~~r~~~~~~f~~g~~~--vLvaT~~~ 90 (170)
T 2yjt_D 15 EHKTALLVHLLKQ--PEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRVN--VLVATDVA 90 (170)
Confidence 6788888888874 3457999999999999999999999999999999999999999999999987544 78889999
Q ss_pred ccccCcCccCEEEEeCCCCCccchhHHHHHHhhcCCC
Q psy2046 102 GLGINLTAADTVIIHDVDFNPYNDKQAEDRCHRVGQT 138 (138)
Q Consensus 102 ~~Gl~l~~~~~vi~~~~~~~~~~~~Q~~gR~~R~GQt 138 (138)
++|+|++++++||++++||++..|.|++||++|.||+
T Consensus 91 ~~Gid~~~~~~Vi~~~~p~~~~~~~qr~GR~~R~g~~ 127 (170)
T 2yjt_D 91 ARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRK 127 (170)
Confidence 9999999999999999999999999999999999974
No 14
>3i32_A Heat resistant RNA dependent ATPase; RNA helicase, dimer, RNA recognition motif, ATP-BIND helicase, nucleotide-binding; 2.80A {Thermus thermophilus}
Probab=99.91 E-value=4.7e-24 Score=152.44 Aligned_cols=115 Identities=16% Similarity=0.245 Sum_probs=102.1
Q ss_pred ccCchHHHHHHHHHHhhhCCCeEEEEeccHHHHHHHHHHHhhcCCeEEEEeCCCChHHHHHHHHHHhcCCCceEEEEecc
Q psy2046 20 VESGKLKKLDEILPDLKKNGHRVLIFSQFIFVLDILGHYMDIRGWRHLRLDGATQVSSRQELIDEYNRDQDLFAFLLSTK 99 (138)
Q Consensus 20 ~~s~K~~~l~~ll~~~~~~~~k~iif~~~~~~~~~l~~~l~~~g~~~~~i~g~~~~~~R~~~~~~F~~~~~~~vll~~~~ 99 (138)
..+.|+..+.+++... .+.++|||+++...++.+...|...|+.+..+||++++.+|.++++.|+++... +|++|+
T Consensus 11 ~~~~K~~~L~~ll~~~--~~~~~LVF~~t~~~~~~l~~~L~~~g~~~~~lhg~l~~~~r~~~~~~f~~g~~~--vLVaT~ 86 (300)
T 3i32_A 11 PVRGRLEVLSDLLYVA--SPDRAMVFTRTKAETEEIAQGLLRLGHPAQALHGDMSQGERERVMGAFRQGEVR--VLVATD 86 (300)
T ss_dssp CSSSHHHHHHHHHHHH--CCSSEEEECSSHHHHHHHHHHHHTTTCCEEEECSCCCTHHHHHHHHHHHHTSCC--EEEECS
T ss_pred CHHHHHHHHHHHHHhc--CCCCEEEEECCHHHHHHHHHHHHhCCCCEEEEeCCCCHHHHHHHHHHhhcCCce--EEEEec
Confidence 4567999999999753 477999999999999999999999999999999999999999999999988654 788899
Q ss_pred ccccccCcCccCEEEEeCCCCCccchhHHHHHHhhcCCC
Q psy2046 100 AGGLGINLTAADTVIIHDVDFNPYNDKQAEDRCHRVGQT 138 (138)
Q Consensus 100 ~~~~Gl~l~~~~~vi~~~~~~~~~~~~Q~~gR~~R~GQt 138 (138)
++++|+|++++++||++++||++..|.||+||++|.|+.
T Consensus 87 va~~Gidi~~v~~VI~~d~p~s~~~y~Qr~GRagR~g~~ 125 (300)
T 3i32_A 87 VAARGLDIPQVDLVVHYRMPDRAEAYQHRSGRTGRAGRG 125 (300)
T ss_dssp TTTCSTTCCCCSEEEESSCCSSTTHHHHHHTCCC-----
T ss_pred hhhcCccccceeEEEEcCCCCCHHHHHHHccCcCcCCCC
Confidence 999999999999999999999999999999999999863
No 15
>3dmq_A RNA polymerase-associated protein RAPA; SWF2/SNF2, transcription factor, RNA polymerase recycling, activator, ATP-binding, DNA-binding; 3.20A {Escherichia coli K12}
Probab=99.90 E-value=6.4e-24 Score=171.16 Aligned_cols=120 Identities=19% Similarity=0.225 Sum_probs=108.7
Q ss_pred cccccCchHHHHHHHHHHhhhCCCeEEEEeccHHHHHHHHHHHhh-cCCeEEEEeCCCChHHHHHHHHHHhcCCCceEEE
Q psy2046 17 DLVVESGKLKKLDEILPDLKKNGHRVLIFSQFIFVLDILGHYMDI-RGWRHLRLDGATQVSSRQELIDEYNRDQDLFAFL 95 (138)
Q Consensus 17 ~~~~~s~K~~~l~~ll~~~~~~~~k~iif~~~~~~~~~l~~~l~~-~g~~~~~i~g~~~~~~R~~~~~~F~~~~~~~vll 95 (138)
.....++|+..+.+++.. ..+.|+||||++...++.+...|.. .|+++..+||++++.+|.+++++|++++....+|
T Consensus 483 ~~~~~~~K~~~L~~ll~~--~~~~k~iVF~~~~~~~~~l~~~L~~~~g~~~~~lhG~~~~~~R~~~l~~F~~g~~~~~vL 560 (968)
T 3dmq_A 483 TWWNFDPRVEWLMGYLTS--HRSQKVLVICAKAATALQLEQVLREREGIRAAVFHEGMSIIERDRAAAWFAEEDTGAQVL 560 (968)
T ss_dssp CTTTTSHHHHHHHHHHHH--TSSSCCCEECSSTHHHHHHHHHHHTTTCCCEEEECTTSCTTHHHHHHHHHHSTTSSCEEE
T ss_pred cccCccHHHHHHHHHHHh--CCCCCEEEEeCcHHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhCCCCcccEE
Confidence 345677899999999986 4678999999999999999999984 5999999999999999999999999986333477
Q ss_pred EeccccccccCcCccCEEEEeCCCCCccchhHHHHHHhhcCCC
Q psy2046 96 LSTKAGGLGINLTAADTVIIHDVDFNPYNDKQAEDRCHRVGQT 138 (138)
Q Consensus 96 ~~~~~~~~Gl~l~~~~~vi~~~~~~~~~~~~Q~~gR~~R~GQt 138 (138)
++|+++++|+|++.+++||++|+|||+..|.|++||++|.||+
T Consensus 561 vaT~v~~~GlDl~~~~~VI~~d~p~~~~~~~Q~~GR~~R~Gq~ 603 (968)
T 3dmq_A 561 LCSEIGSEGRNFQFASHMVMFDLPFNPDLLEQRIGRLDRIGQA 603 (968)
T ss_dssp ECSCCTTCSSCCTTCCEEECSSCCSSHHHHHHHHHTTSCSSSC
T ss_pred EecchhhcCCCcccCcEEEEecCCCCHHHHHHHhhccccCCCC
Confidence 7899999999999999999999999999999999999999985
No 16
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=99.90 E-value=2.4e-23 Score=155.33 Aligned_cols=115 Identities=20% Similarity=0.294 Sum_probs=103.8
Q ss_pred cccCchHHHHHHHHHHhhhCCCeEEEEeccHHHHHHHHHHHhhcCCeEEEEeCCCChHHHHHHHHHHhcCCCceEEEEec
Q psy2046 19 VVESGKLKKLDEILPDLKKNGHRVLIFSQFIFVLDILGHYMDIRGWRHLRLDGATQVSSRQELIDEYNRDQDLFAFLLST 98 (138)
Q Consensus 19 ~~~s~K~~~l~~ll~~~~~~~~k~iif~~~~~~~~~l~~~l~~~g~~~~~i~g~~~~~~R~~~~~~F~~~~~~~vll~~~ 98 (138)
.....|...+.+++.. .+.++|||+++...++.+.+.|...|+++..+||++++.+|.+++++|++++.. +|++|
T Consensus 283 ~~~~~k~~~l~~~l~~---~~~~~lVF~~t~~~a~~l~~~L~~~~~~~~~lhg~~~~~~R~~~l~~F~~g~~~--vLvaT 357 (434)
T 2db3_A 283 VNKYAKRSKLIEILSE---QADGTIVFVETKRGADFLASFLSEKEFPTTSIHGDRLQSQREQALRDFKNGSMK--VLIAT 357 (434)
T ss_dssp CCGGGHHHHHHHHHHH---CCTTEEEECSSHHHHHHHHHHHHHTTCCEEEESTTSCHHHHHHHHHHHHTSSCS--EEEEC
T ss_pred eCcHHHHHHHHHHHHh---CCCCEEEEEeCcHHHHHHHHHHHhCCCCEEEEeCCCCHHHHHHHHHHHHcCCCc--EEEEc
Confidence 3445678888777754 344699999999999999999999999999999999999999999999988654 78899
Q ss_pred cccccccCcCccCEEEEeCCCCCccchhHHHHHHhhcCCC
Q psy2046 99 KAGGLGINLTAADTVIIHDVDFNPYNDKQAEDRCHRVGQT 138 (138)
Q Consensus 99 ~~~~~Gl~l~~~~~vi~~~~~~~~~~~~Q~~gR~~R~GQt 138 (138)
+++++|+|++++++||++|+|+++..|.||+||++|.|++
T Consensus 358 ~v~~rGlDi~~v~~VI~~d~p~~~~~y~qriGR~gR~g~~ 397 (434)
T 2db3_A 358 SVASRGLDIKNIKHVINYDMPSKIDDYVHRIGRTGRVGNN 397 (434)
T ss_dssp GGGTSSCCCTTCCEEEESSCCSSHHHHHHHHTTSSCTTCC
T ss_pred hhhhCCCCcccCCEEEEECCCCCHHHHHHHhcccccCCCC
Confidence 9999999999999999999999999999999999999974
No 17
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=99.89 E-value=1.1e-22 Score=148.78 Aligned_cols=114 Identities=17% Similarity=0.201 Sum_probs=104.5
Q ss_pred cCchHHHHHHHHHHhhhCCCeEEEEeccHHHHHHHHHHHhhcCCeEEEEeCCCChHHHHHHHHHHhcCCCceEEEEeccc
Q psy2046 21 ESGKLKKLDEILPDLKKNGHRVLIFSQFIFVLDILGHYMDIRGWRHLRLDGATQVSSRQELIDEYNRDQDLFAFLLSTKA 100 (138)
Q Consensus 21 ~s~K~~~l~~ll~~~~~~~~k~iif~~~~~~~~~l~~~l~~~g~~~~~i~g~~~~~~R~~~~~~F~~~~~~~vll~~~~~ 100 (138)
...|...+.+++... .+.++|||+++...++.+.+.|...|+++..+||+++..+|.+++++|++++.. +|++|++
T Consensus 234 ~~~~~~~l~~~l~~~--~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~--vlv~T~~ 309 (391)
T 1xti_A 234 DNEKNRKLFDLLDVL--EFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKDFQRR--ILVATNL 309 (391)
T ss_dssp GGGHHHHHHHHHHHS--CCSEEEEECSCHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTCCS--EEEESCC
T ss_pred chhHHHHHHHHHHhc--CCCcEEEEeCcHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHhcCCCc--EEEECCh
Confidence 456788888888753 567999999999999999999999999999999999999999999999988654 7889999
Q ss_pred cccccCcCccCEEEEeCCCCCccchhHHHHHHhhcCCC
Q psy2046 101 GGLGINLTAADTVIIHDVDFNPYNDKQAEDRCHRVGQT 138 (138)
Q Consensus 101 ~~~Gl~l~~~~~vi~~~~~~~~~~~~Q~~gR~~R~GQt 138 (138)
+++|+|++++++||++++||++..|.|++||++|.|++
T Consensus 310 ~~~Gidi~~~~~Vi~~~~p~s~~~~~Qr~GR~~R~g~~ 347 (391)
T 1xti_A 310 FGRGMDIERVNIAFNYDMPEDSDTYLHRVARAGRFGTK 347 (391)
T ss_dssp CSSCBCCTTEEEEEESSCCSSHHHHHHHHCBCSSSCCC
T ss_pred hhcCCCcccCCEEEEeCCCCCHHHHHHhcccccCCCCc
Confidence 99999999999999999999999999999999999974
No 18
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=99.88 E-value=3.3e-23 Score=157.58 Aligned_cols=113 Identities=21% Similarity=0.291 Sum_probs=61.0
Q ss_pred cCchHHHHHHHHHHhh--hCCCeEEEEeccHHHHHHHHHHHhhc------------CCeEEEEeCCCChHHHHHHHHHHh
Q psy2046 21 ESGKLKKLDEILPDLK--KNGHRVLIFSQFIFVLDILGHYMDIR------------GWRHLRLDGATQVSSRQELIDEYN 86 (138)
Q Consensus 21 ~s~K~~~l~~ll~~~~--~~~~k~iif~~~~~~~~~l~~~l~~~------------g~~~~~i~g~~~~~~R~~~~~~F~ 86 (138)
.++|+..+.++|.+.. ..+.++|||+++...++.|.+.|... |..+..+||++++.+|.+++++|+
T Consensus 370 ~~~K~~~L~~~l~~~~~~~~~~k~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~R~~~~~~F~ 449 (556)
T 4a2p_A 370 ENPKLEELVCILDDAYRYNPQTRTLLFAKTRALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFK 449 (556)
T ss_dssp CCHHHHHHHHHHHHHHHHCTTCCEEEEESSHHHHHHHHHHHTTCSGGGSCCEEC--------------------------
T ss_pred CChHHHHHHHHHHHHhcCCCCceEEEEEccHHHHHHHHHHHHhCCCcceeeeeEEEccCCcccccccCHHHHHHHHHHhc
Confidence 5789999999998765 55789999999999999999999875 555666778899999999999999
Q ss_pred c-CCCceEEEEeccccccccCcCccCEEEEeCCCCCccchhHHHHHHhhcC
Q psy2046 87 R-DQDLFAFLLSTKAGGLGINLTAADTVIIHDVDFNPYNDKQAEDRCHRVG 136 (138)
Q Consensus 87 ~-~~~~~vll~~~~~~~~Gl~l~~~~~vi~~~~~~~~~~~~Q~~gR~~R~G 136 (138)
+ ++ .. +|++|+++++|+|++++++||+||+|||+..|.||+|| +|.+
T Consensus 450 ~~g~-~~-vLvaT~~~~~GiDip~v~~VI~~d~p~s~~~~~Qr~GR-gR~~ 497 (556)
T 4a2p_A 450 TSKD-NR-LLIATSVADEGIDIVQCNLVVLYEYSGNVTKMIQVRGR-GRAA 497 (556)
T ss_dssp -----CC-EEEEEC-----------CEEEEETCCSCHHHHHHC--------
T ss_pred ccCc-eE-EEEEcCchhcCCCchhCCEEEEeCCCCCHHHHHHhcCC-CCCC
Confidence 8 54 33 67889999999999999999999999999999999999 8763
No 19
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=99.88 E-value=2.1e-22 Score=148.47 Aligned_cols=112 Identities=19% Similarity=0.226 Sum_probs=102.7
Q ss_pred chHHHHHHHHHHhhhCCCeEEEEeccHHHHHHHHHHHhhcCCeEEEEeCCCChHHHHHHHHHHhcCCCceEEEEeccccc
Q psy2046 23 GKLKKLDEILPDLKKNGHRVLIFSQFIFVLDILGHYMDIRGWRHLRLDGATQVSSRQELIDEYNRDQDLFAFLLSTKAGG 102 (138)
Q Consensus 23 ~K~~~l~~ll~~~~~~~~k~iif~~~~~~~~~l~~~l~~~g~~~~~i~g~~~~~~R~~~~~~F~~~~~~~vll~~~~~~~ 102 (138)
.|...+.+++... ...++|||+++...++.+.+.|...|+.+..+||++++.+|.++++.|++++.. +|++|++++
T Consensus 262 ~k~~~l~~~~~~~--~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~--vlv~T~~~~ 337 (410)
T 2j0s_A 262 WKFDTLCDLYDTL--TITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFRSGASR--VLISTDVWA 337 (410)
T ss_dssp HHHHHHHHHHHHH--TSSEEEEECSSHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHHHHTSSC--EEEECGGGS
T ss_pred hHHHHHHHHHHhc--CCCcEEEEEcCHHHHHHHHHHHHhCCCceEEeeCCCCHHHHHHHHHHHHCCCCC--EEEECChhh
Confidence 3788888887753 355999999999999999999999999999999999999999999999988654 778999999
Q ss_pred cccCcCccCEEEEeCCCCCccchhHHHHHHhhcCCC
Q psy2046 103 LGINLTAADTVIIHDVDFNPYNDKQAEDRCHRVGQT 138 (138)
Q Consensus 103 ~Gl~l~~~~~vi~~~~~~~~~~~~Q~~gR~~R~GQt 138 (138)
+|+|++++++||++++||++..|.||+||++|.|++
T Consensus 338 ~Gidi~~v~~Vi~~~~p~s~~~~~Qr~GR~gR~g~~ 373 (410)
T 2j0s_A 338 RGLDVPQVSLIINYDLPNNRELYIHRIGRSGRYGRK 373 (410)
T ss_dssp SSCCCTTEEEEEESSCCSSHHHHHHHHTTSSGGGCC
T ss_pred CcCCcccCCEEEEECCCCCHHHHHHhcccccCCCCc
Confidence 999999999999999999999999999999999974
No 20
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=99.88 E-value=2.4e-22 Score=148.18 Aligned_cols=116 Identities=20% Similarity=0.270 Sum_probs=103.1
Q ss_pred ccCchHHHHHHHHHHhhhCCCeEEEEeccHHHHHHHHHHHhhcCCeEEEEeCCCChHHHHHHHHHHhcCCCceEEEEecc
Q psy2046 20 VESGKLKKLDEILPDLKKNGHRVLIFSQFIFVLDILGHYMDIRGWRHLRLDGATQVSSRQELIDEYNRDQDLFAFLLSTK 99 (138)
Q Consensus 20 ~~s~K~~~l~~ll~~~~~~~~k~iif~~~~~~~~~l~~~l~~~g~~~~~i~g~~~~~~R~~~~~~F~~~~~~~vll~~~~ 99 (138)
....|...+.+++... ..+.++|||+++...++.+.+.|...|+.+..+||++++.+|.+++++|++++.. +|++|+
T Consensus 258 ~~~~~~~~l~~~l~~~-~~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~--vlvaT~ 334 (417)
T 2i4i_A 258 EESDKRSFLLDLLNAT-GKDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFRSGKSP--ILVATA 334 (417)
T ss_dssp CGGGHHHHHHHHHHTC-CTTCEEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHHTSSC--EEEECH
T ss_pred ccHhHHHHHHHHHHhc-CCCCeEEEEECCHHHHHHHHHHHHHCCCCeeEecCCCCHHHHHHHHHHHHcCCCC--EEEECC
Confidence 3456788888887653 3467999999999999999999999999999999999999999999999988654 788999
Q ss_pred ccccccCcCccCEEEEeCCCCCccchhHHHHHHhhcCCC
Q psy2046 100 AGGLGINLTAADTVIIHDVDFNPYNDKQAEDRCHRVGQT 138 (138)
Q Consensus 100 ~~~~Gl~l~~~~~vi~~~~~~~~~~~~Q~~gR~~R~GQt 138 (138)
++++|+|++++++||++++||++..|.||+||++|.|++
T Consensus 335 ~~~~Gidip~v~~Vi~~~~p~s~~~~~Qr~GR~gR~g~~ 373 (417)
T 2i4i_A 335 VAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNL 373 (417)
T ss_dssp HHHTTSCCCCEEEEEESSCCSSHHHHHHHHTTBCC--CC
T ss_pred hhhcCCCcccCCEEEEEcCCCCHHHHHHhcCccccCCCC
Confidence 999999999999999999999999999999999999974
No 21
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=99.88 E-value=4.4e-22 Score=146.21 Aligned_cols=115 Identities=18% Similarity=0.246 Sum_probs=104.2
Q ss_pred ccCchHHHHHHHHHHhhhCCCeEEEEeccHHHHHHHHHHHhhcCCeEEEEeCCCChHHHHHHHHHHhcCCCceEEEEecc
Q psy2046 20 VESGKLKKLDEILPDLKKNGHRVLIFSQFIFVLDILGHYMDIRGWRHLRLDGATQVSSRQELIDEYNRDQDLFAFLLSTK 99 (138)
Q Consensus 20 ~~s~K~~~l~~ll~~~~~~~~k~iif~~~~~~~~~l~~~l~~~g~~~~~i~g~~~~~~R~~~~~~F~~~~~~~vll~~~~ 99 (138)
....|...+..++... .+.++|||+++...++.+.+.|...|+.+..+||+++..+|.++++.|++++.. +|++|+
T Consensus 241 ~~~~k~~~l~~~~~~~--~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~--vLv~T~ 316 (400)
T 1s2m_A 241 EERQKLHCLNTLFSKL--QINQAIIFCNSTNRVELLAKKITDLGYSCYYSHARMKQQERNKVFHEFRQGKVR--TLVCSD 316 (400)
T ss_dssp CGGGHHHHHHHHHHHS--CCSEEEEECSSHHHHHHHHHHHHHHTCCEEEECTTSCHHHHHHHHHHHHTTSSS--EEEESS
T ss_pred chhhHHHHHHHHHhhc--CCCcEEEEEecHHHHHHHHHHHHhcCCCeEEecCCCCHHHHHHHHHHHhcCCCc--EEEEcC
Confidence 3457788887777643 457999999999999999999999999999999999999999999999987644 788999
Q ss_pred ccccccCcCccCEEEEeCCCCCccchhHHHHHHhhcCCC
Q psy2046 100 AGGLGINLTAADTVIIHDVDFNPYNDKQAEDRCHRVGQT 138 (138)
Q Consensus 100 ~~~~Gl~l~~~~~vi~~~~~~~~~~~~Q~~gR~~R~GQt 138 (138)
++++|+|++++++||++++||++..|.||+||++|.||+
T Consensus 317 ~~~~Gidip~~~~Vi~~~~p~s~~~~~Qr~GR~gR~g~~ 355 (400)
T 1s2m_A 317 LLTRGIDIQAVNVVINFDFPKTAETYLHRIGRSGRFGHL 355 (400)
T ss_dssp CSSSSCCCTTEEEEEESSCCSSHHHHHHHHCBSSCTTCC
T ss_pred ccccCCCccCCCEEEEeCCCCCHHHHHHhcchhcCCCCC
Confidence 999999999999999999999999999999999999974
No 22
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=99.87 E-value=3.5e-22 Score=144.70 Aligned_cols=113 Identities=19% Similarity=0.258 Sum_probs=102.4
Q ss_pred cCchHHHHHHHHHHhhhCCCeEEEEeccHHHHHHHHHHHhhcCCeEEEEeCCCChHHHHHHHHHHhcCCCceEEEEeccc
Q psy2046 21 ESGKLKKLDEILPDLKKNGHRVLIFSQFIFVLDILGHYMDIRGWRHLRLDGATQVSSRQELIDEYNRDQDLFAFLLSTKA 100 (138)
Q Consensus 21 ~s~K~~~l~~ll~~~~~~~~k~iif~~~~~~~~~l~~~l~~~g~~~~~i~g~~~~~~R~~~~~~F~~~~~~~vll~~~~~ 100 (138)
...|+..+.+++. ..+.++|||+++...++.+.+.|+..|+.+..+||+++..+|.++++.|++++.. +|++|++
T Consensus 223 ~~~~~~~l~~~l~---~~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~--vlv~T~~ 297 (367)
T 1hv8_A 223 ENERFEALCRLLK---NKEFYGLVFCKTKRDTKELASMLRDIGFKAGAIHGDLSQSQREKVIRLFKQKKIR--ILIATDV 297 (367)
T ss_dssp GGGHHHHHHHHHC---STTCCEEEECSSHHHHHHHHHHHHHTTCCEEEECSSSCHHHHHHHHHHHHTTSSS--EEEECTT
T ss_pred hHHHHHHHHHHHh---cCCCcEEEEECCHHHHHHHHHHHHhcCCCeEEeeCCCCHHHHHHHHHHHHcCCCe--EEEECCh
Confidence 4467777776664 5677999999999999999999999999999999999999999999999987544 7788999
Q ss_pred cccccCcCccCEEEEeCCCCCccchhHHHHHHhhcCCC
Q psy2046 101 GGLGINLTAADTVIIHDVDFNPYNDKQAEDRCHRVGQT 138 (138)
Q Consensus 101 ~~~Gl~l~~~~~vi~~~~~~~~~~~~Q~~gR~~R~GQt 138 (138)
+++|+|++++++||++++||++..+.|++||++|.|++
T Consensus 298 ~~~Gid~~~~~~Vi~~~~~~s~~~~~Q~~GR~~R~g~~ 335 (367)
T 1hv8_A 298 MSRGIDVNDLNCVINYHLPQNPESYMHRIGRTGRAGKK 335 (367)
T ss_dssp HHHHCCCSCCSEEEESSCCSCHHHHHHHSTTTCCSSSC
T ss_pred hhcCCCcccCCEEEEecCCCCHHHhhhcccccccCCCc
Confidence 99999999999999999999999999999999999974
No 23
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=99.87 E-value=9.5e-23 Score=154.75 Aligned_cols=113 Identities=17% Similarity=0.251 Sum_probs=77.1
Q ss_pred cCchHHHHHHHHHHhhh--CCCeEEEEeccHHHHHHHHHHHhhcC------------CeEEEEeCCCChHHHHHHHHHHh
Q psy2046 21 ESGKLKKLDEILPDLKK--NGHRVLIFSQFIFVLDILGHYMDIRG------------WRHLRLDGATQVSSRQELIDEYN 86 (138)
Q Consensus 21 ~s~K~~~l~~ll~~~~~--~~~k~iif~~~~~~~~~l~~~l~~~g------------~~~~~i~g~~~~~~R~~~~~~F~ 86 (138)
.++|+..+.++|..... .+.++|||+++...++.|...|...+ ..+..+||++++.+|.+++++|+
T Consensus 369 ~~~k~~~l~~~l~~~~~~~~~~k~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~R~~~~~~F~ 448 (555)
T 3tbk_A 369 ENPKLRDLYLVLQEEYHLKPETKTILFVKTRALVDALKKWIEENPALSFLKPGILTGRGRTNRATGMTLPAQKCVLEAFR 448 (555)
T ss_dssp CCHHHHHHHHHHHHHHHHCTTCCEEEECSSHHHHHHHHHHHHHCGGGTTCCEEECCC-----------------------
T ss_pred CCHHHHHHHHHHHHHhccCCCceEEEEeCcHHHHHHHHHHHhhCcCcCceeeeEEEecCCcccccccCHHHHHHHHHHHh
Confidence 57899999999987653 35899999999999999999998764 34556667999999999999999
Q ss_pred cCCCceEEEEeccccccccCcCccCEEEEeCCCCCccchhHHHHHHhhc
Q psy2046 87 RDQDLFAFLLSTKAGGLGINLTAADTVIIHDVDFNPYNDKQAEDRCHRV 135 (138)
Q Consensus 87 ~~~~~~vll~~~~~~~~Gl~l~~~~~vi~~~~~~~~~~~~Q~~gR~~R~ 135 (138)
+++... +|++|+++++|+|++++++||+||+|||+..|.||+|| +|.
T Consensus 449 ~~g~~~-vLvaT~~~~~GlDlp~v~~VI~~d~p~s~~~~~Qr~GR-gR~ 495 (555)
T 3tbk_A 449 ASGDNN-ILIATSVADEGIDIAECNLVILYEYVGNVIKMIQTRGR-GRA 495 (555)
T ss_dssp ---CCS-EEEECCCTTCCEETTSCSEEEEESCCSSCCCEECSSCC-CTT
T ss_pred cCCCee-EEEEcchhhcCCccccCCEEEEeCCCCCHHHHHHhcCc-CcC
Confidence 833334 67799999999999999999999999999999999999 664
No 24
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=99.86 E-value=1.6e-21 Score=142.50 Aligned_cols=112 Identities=21% Similarity=0.275 Sum_probs=99.6
Q ss_pred chHHHHHHHHHHhhhCCCeEEEEeccHHHHHHHHHHHhhcCCeEEEEeCCCChHHHHHHHHHHhcCCCceEEEEeccccc
Q psy2046 23 GKLKKLDEILPDLKKNGHRVLIFSQFIFVLDILGHYMDIRGWRHLRLDGATQVSSRQELIDEYNRDQDLFAFLLSTKAGG 102 (138)
Q Consensus 23 ~K~~~l~~ll~~~~~~~~k~iif~~~~~~~~~l~~~l~~~g~~~~~i~g~~~~~~R~~~~~~F~~~~~~~vll~~~~~~~ 102 (138)
.|...+.+++.. ..+.++|||+++...++.+...|+..|+.+..+||+++..+|.+++++|++++.. +|++|++++
T Consensus 229 ~~~~~l~~~~~~--~~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~--vlv~T~~~~ 304 (395)
T 3pey_A 229 DKFDVLTELYGL--MTIGSSIIFVATKKTANVLYGKLKSEGHEVSILHGDLQTQERDRLIDDFREGRSK--VLITTNVLA 304 (395)
T ss_dssp HHHHHHHHHHTT--TTSSEEEEECSCHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHHHTTSCC--EEEECGGGS
T ss_pred HHHHHHHHHHHh--ccCCCEEEEeCCHHHHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHHHHCCCCC--EEEECChhh
Confidence 455555555543 2457999999999999999999999999999999999999999999999988654 788999999
Q ss_pred cccCcCccCEEEEeCCCC------CccchhHHHHHHhhcCCC
Q psy2046 103 LGINLTAADTVIIHDVDF------NPYNDKQAEDRCHRVGQT 138 (138)
Q Consensus 103 ~Gl~l~~~~~vi~~~~~~------~~~~~~Q~~gR~~R~GQt 138 (138)
+|+|++++++||++++|| ++..|.|++||++|.|++
T Consensus 305 ~Gidip~~~~Vi~~~~p~~~~~~~s~~~~~Qr~GR~gR~g~~ 346 (395)
T 3pey_A 305 RGIDIPTVSMVVNYDLPTLANGQADPATYIHRIGRTGRFGRK 346 (395)
T ss_dssp SSCCCTTEEEEEESSCCBCTTSSBCHHHHHHHHTTSSCTTCC
T ss_pred cCCCcccCCEEEEcCCCCCCcCCCCHHHhhHhccccccCCCC
Confidence 999999999999999999 999999999999999974
No 25
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Probab=99.86 E-value=3.8e-21 Score=146.51 Aligned_cols=114 Identities=18% Similarity=0.228 Sum_probs=103.0
Q ss_pred cCchHHHHHHHHHHhhhCCCeEEEEeccHHHHHHHHHHHhhcCCeEEEEeCCCChHHHHHHHHHHhcCCCceEEEEeccc
Q psy2046 21 ESGKLKKLDEILPDLKKNGHRVLIFSQFIFVLDILGHYMDIRGWRHLRLDGATQVSSRQELIDEYNRDQDLFAFLLSTKA 100 (138)
Q Consensus 21 ~s~K~~~l~~ll~~~~~~~~k~iif~~~~~~~~~l~~~l~~~g~~~~~i~g~~~~~~R~~~~~~F~~~~~~~vll~~~~~ 100 (138)
...+...+.+++... .+.++|||+++...++.+.+.|...|+.+..+||++++++|.+++++|++++.. +|++|++
T Consensus 220 ~~~~~~~l~~~l~~~--~~~~~IVf~~sr~~~e~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~--vlVaT~a 295 (523)
T 1oyw_A 220 KFKPLDQLMRYVQEQ--RGKSGIIYCNSRAKVEDTAARLQSKGISAAAYHAGLENNVRADVQEKFQRDDLQ--IVVATVA 295 (523)
T ss_dssp CSSHHHHHHHHHHHT--TTCCEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTSCS--EEEECTT
T ss_pred CCCHHHHHHHHHHhc--CCCcEEEEeCCHHHHHHHHHHHHHCCCCEEEecCCCCHHHHHHHHHHHHcCCCe--EEEEech
Confidence 355677777777642 567999999999999999999999999999999999999999999999988644 7889999
Q ss_pred cccccCcCccCEEEEeCCCCCccchhHHHHHHhhcCCC
Q psy2046 101 GGLGINLTAADTVIIHDVDFNPYNDKQAEDRCHRVGQT 138 (138)
Q Consensus 101 ~~~Gl~l~~~~~vi~~~~~~~~~~~~Q~~gR~~R~GQt 138 (138)
+++|+|+++++.||++++|++...|.|++||++|.|+.
T Consensus 296 ~~~GiD~p~v~~VI~~~~p~s~~~y~Qr~GRaGR~g~~ 333 (523)
T 1oyw_A 296 FGMGINKPNVRFVVHFDIPRNIESYYQETGRAGRDGLP 333 (523)
T ss_dssp SCTTTCCTTCCEEEESSCCSSHHHHHHHHTTSCTTSSC
T ss_pred hhCCCCccCccEEEEECCCCCHHHHHHHhccccCCCCC
Confidence 99999999999999999999999999999999999963
No 26
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos}
Probab=99.86 E-value=5e-22 Score=157.57 Aligned_cols=112 Identities=21% Similarity=0.307 Sum_probs=64.8
Q ss_pred cCchHHHHHHHHHHhh--hCCCeEEEEeccHHHHHHHHHHHhhc------------CCeEEEEeCCCChHHHHHHHHHHh
Q psy2046 21 ESGKLKKLDEILPDLK--KNGHRVLIFSQFIFVLDILGHYMDIR------------GWRHLRLDGATQVSSRQELIDEYN 86 (138)
Q Consensus 21 ~s~K~~~l~~ll~~~~--~~~~k~iif~~~~~~~~~l~~~l~~~------------g~~~~~i~g~~~~~~R~~~~~~F~ 86 (138)
.++|+..|.++|.... ..+.|+|||+++...++.|...|... |..+..+||++++.+|.+++++|+
T Consensus 611 ~~~K~~~L~~lL~~~~~~~~~~kvLIF~~~~~~~~~L~~~L~~~~~~~~~~~~~l~G~~~~~~hg~~~~~eR~~~l~~F~ 690 (797)
T 4a2q_A 611 ENPKLEELVCILDDAYRYNPQTRTLLFAKTRALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFK 690 (797)
T ss_dssp CCHHHHHHHHHHHHHHHHCSSCCEEEEESSHHHHHHHHHHHHTCSTTCSCCCEEC-------------------------
T ss_pred CChHHHHHHHHHHHHhccCCCCeEEEEECcHHHHHHHHHHHHhCcccccccceEEEecCCcccCCCCCHHHHHHHHHHhh
Confidence 5789999999998753 45689999999999999999999773 556677889999999999999999
Q ss_pred c-CCCceEEEEeccccccccCcCccCEEEEeCCCCCccchhHHHHHHhhc
Q psy2046 87 R-DQDLFAFLLSTKAGGLGINLTAADTVIIHDVDFNPYNDKQAEDRCHRV 135 (138)
Q Consensus 87 ~-~~~~~vll~~~~~~~~Gl~l~~~~~vi~~~~~~~~~~~~Q~~gR~~R~ 135 (138)
+ +.. . +|++|+++++|+|++.+++||+||+|||+..|.||+|| +|.
T Consensus 691 ~~g~~-~-vLVaT~~~~~GIDlp~v~~VI~yd~p~s~~~~iQr~GR-GR~ 737 (797)
T 4a2q_A 691 TSKDN-R-LLIATSVADEGIDIVQCNLVVLYEYSGNVTKMIQVRGR-GRA 737 (797)
T ss_dssp ---CC-S-EEEEECC-------CCCSEEEEESCCSCHHHHHTC-------
T ss_pred ccCCc-e-EEEEcCchhcCCCchhCCEEEEeCCCCCHHHHHHhcCC-CCC
Confidence 8 543 3 77899999999999999999999999999999999999 886
No 27
>4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos}
Probab=99.86 E-value=5.6e-22 Score=159.51 Aligned_cols=113 Identities=21% Similarity=0.306 Sum_probs=66.6
Q ss_pred cCchHHHHHHHHHHhh--hCCCeEEEEeccHHHHHHHHHHHhhc------------CCeEEEEeCCCChHHHHHHHHHHh
Q psy2046 21 ESGKLKKLDEILPDLK--KNGHRVLIFSQFIFVLDILGHYMDIR------------GWRHLRLDGATQVSSRQELIDEYN 86 (138)
Q Consensus 21 ~s~K~~~l~~ll~~~~--~~~~k~iif~~~~~~~~~l~~~l~~~------------g~~~~~i~g~~~~~~R~~~~~~F~ 86 (138)
.++|+..|.++|.... ..+.++|||++++.+++.|.++|... |..+..+||++++.+|.+++++|+
T Consensus 611 ~~~K~~~L~~lL~~~~~~~~~~rvLIF~~t~~~ae~L~~~L~~~~~l~~ik~~~l~G~~~~~~hg~m~~~eR~~il~~Fr 690 (936)
T 4a2w_A 611 ENPKLEELVCILDDAYRYNPQTRTLLFAKTRALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFK 690 (936)
T ss_dssp CCHHHHHHHHHHHHTTTSCTTCCEEEEESSHHHHHHHHHHHHHCSTTSSCCCEEC-------------------------
T ss_pred CCHHHHHHHHHHHHHhccCCCCeEEEEeCCHHHHHHHHHHHhhCccccccceeEEecCCCcccCCCCCHHHHHHHHHHhh
Confidence 5889999999998764 44689999999999999999999986 566667788999999999999999
Q ss_pred c-CCCceEEEEeccccccccCcCccCEEEEeCCCCCccchhHHHHHHhhcC
Q psy2046 87 R-DQDLFAFLLSTKAGGLGINLTAADTVIIHDVDFNPYNDKQAEDRCHRVG 136 (138)
Q Consensus 87 ~-~~~~~vll~~~~~~~~Gl~l~~~~~vi~~~~~~~~~~~~Q~~gR~~R~G 136 (138)
+ +.. . +|++|+++++|||++.+++||+||+|||+..|.||+|| +|.+
T Consensus 691 ~~g~~-~-VLVaT~~~~eGIDlp~v~~VI~yD~p~s~~~~iQr~GR-GR~~ 738 (936)
T 4a2w_A 691 TSKDN-R-LLIATSVADEGIDIVQCNLVVLYEYSGNVTKMIQVRGR-GRAA 738 (936)
T ss_dssp ---CC-S-EEEEECC------CCCCSEEEEESCCSCSHHHHCC--------
T ss_pred ccCCe-e-EEEEeCchhcCCcchhCCEEEEeCCCCCHHHHHHhcCC-CCCC
Confidence 8 543 3 77899999999999999999999999999999999999 8864
No 28
>4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens}
Probab=99.86 E-value=1.7e-22 Score=157.88 Aligned_cols=114 Identities=21% Similarity=0.265 Sum_probs=95.5
Q ss_pred cCchHHHHHHHHHHhhhC---CCeEEEEeccHHHHHHHHHHHhhc------CCeEEEEeCC--------CChHHHHHHHH
Q psy2046 21 ESGKLKKLDEILPDLKKN---GHRVLIFSQFIFVLDILGHYMDIR------GWRHLRLDGA--------TQVSSRQELID 83 (138)
Q Consensus 21 ~s~K~~~l~~ll~~~~~~---~~k~iif~~~~~~~~~l~~~l~~~------g~~~~~i~g~--------~~~~~R~~~~~ 83 (138)
.++|+..|.++|...... +.++|||+++...++.|.+.|... |+++..+||+ +++.+|.++++
T Consensus 379 ~~~k~~~L~~~L~~~~~~~~~~~~~IVF~~s~~~~~~l~~~L~~~~~l~~~g~~~~~lhg~~~~~~~~~~~~~eR~~~~~ 458 (699)
T 4gl2_A 379 ENEKLTKLRNTIMEQYTRTEESARGIIFTKTRQSAYALSQWITENEKFAEVGVKAHHLIGAGHSSEFKPMTQNEQKEVIS 458 (699)
T ss_dssp ---CSSCSHHHHHHHHHHSSSCCCEEEECSCHHHHHHHHHHHHSSCSCC-----CEECCCSCCCTTCCCCCHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHhcCCCCCcEEEEECcHHHHHHHHHHHHhCccccccCcceEEEECCCCccCCCCCCHHHHHHHHH
Confidence 456777888888764432 689999999999999999999987 8999999999 99999999999
Q ss_pred HHhcCCCceEEEEeccccccccCcCccCEEEEeCCCCCccchhHHHHHHhhcC
Q psy2046 84 EYNRDQDLFAFLLSTKAGGLGINLTAADTVIIHDVDFNPYNDKQAEDRCHRVG 136 (138)
Q Consensus 84 ~F~~~~~~~vll~~~~~~~~Gl~l~~~~~vi~~~~~~~~~~~~Q~~gR~~R~G 136 (138)
+|++++.. +|++|+++++|+|+++++.||+||+|||+..|.||+||++|.|
T Consensus 459 ~F~~g~~~--VLVaT~~~~~GIDip~v~~VI~~d~p~s~~~~~Qr~GRArr~g 509 (699)
T 4gl2_A 459 KFRTGKIN--LLIATTVAEEGLDIKECNIVIRYGLVTNEIAMVQARGRARADE 509 (699)
T ss_dssp HHCC---C--CSEEECSCCTTSCCCSCCCCEEESCCCCHHHHHHHHTTSCSSS
T ss_pred HHhcCCCc--EEEEccccccCCccccCCEEEEeCCCCCHHHHHHHcCCCCCCC
Confidence 99987644 7789999999999999999999999999999999999987765
No 29
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=99.85 E-value=5.6e-21 Score=140.45 Aligned_cols=112 Identities=19% Similarity=0.261 Sum_probs=100.0
Q ss_pred chHHHHHHHHHHhhhCCCeEEEEeccHHHHHHHHHHHhhcCCeEEEEeCCCChHHHHHHHHHHhcCCCceEEEEeccccc
Q psy2046 23 GKLKKLDEILPDLKKNGHRVLIFSQFIFVLDILGHYMDIRGWRHLRLDGATQVSSRQELIDEYNRDQDLFAFLLSTKAGG 102 (138)
Q Consensus 23 ~K~~~l~~ll~~~~~~~~k~iif~~~~~~~~~l~~~l~~~g~~~~~i~g~~~~~~R~~~~~~F~~~~~~~vll~~~~~~~ 102 (138)
.|...+.+++.. ..+.++|||+++...++.+...|...++.+..+||++++.+|.++++.|++++.. +|++|++++
T Consensus 252 ~~~~~l~~~~~~--~~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~--vlv~T~~~~ 327 (412)
T 3fht_A 252 EKFQALCNLYGA--ITIAQAMIFCHTRKTASWLAAELSKEGHQVALLSGEMMVEQRAAVIERFREGKEK--VLVTTNVCA 327 (412)
T ss_dssp HHHHHHHHHHHH--HSSSEEEEECSSHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHHHTTSCS--EEEECGGGT
T ss_pred HHHHHHHHHHhh--cCCCCEEEEeCCHHHHHHHHHHHHhCCCeEEEecCCCCHHHHHHHHHHHHCCCCc--EEEEcCccc
Confidence 466666666654 3567999999999999999999999999999999999999999999999988654 788999999
Q ss_pred cccCcCccCEEEEeCCCCCc------cchhHHHHHHhhcCCC
Q psy2046 103 LGINLTAADTVIIHDVDFNP------YNDKQAEDRCHRVGQT 138 (138)
Q Consensus 103 ~Gl~l~~~~~vi~~~~~~~~------~~~~Q~~gR~~R~GQt 138 (138)
+|+|++++++||++++||++ ..|.||+||++|.|+.
T Consensus 328 ~Gidip~~~~Vi~~~~p~~~~~~~s~~~~~Qr~GR~gR~g~~ 369 (412)
T 3fht_A 328 RGIDVEQVSVVINFDLPVDKDGNPDNETYLHRIGRTGRFGKR 369 (412)
T ss_dssp SSCCCTTEEEEEESSCCBCSSSSBCHHHHHHHHTTSSCTTCC
T ss_pred cCCCccCCCEEEEECCCCCCCCCcchheeecccCcccCCCCC
Confidence 99999999999999999876 5899999999999973
No 30
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=99.85 E-value=8.9e-22 Score=144.94 Aligned_cols=113 Identities=22% Similarity=0.257 Sum_probs=90.8
Q ss_pred CchHHHHHHHHHHhhhCCCeEEEEeccHHHHHHHHHHHhhcCCeEEEEeCCCChHHHHHHHHHHhcCCCceEEEEecccc
Q psy2046 22 SGKLKKLDEILPDLKKNGHRVLIFSQFIFVLDILGHYMDIRGWRHLRLDGATQVSSRQELIDEYNRDQDLFAFLLSTKAG 101 (138)
Q Consensus 22 s~K~~~l~~ll~~~~~~~~k~iif~~~~~~~~~l~~~l~~~g~~~~~i~g~~~~~~R~~~~~~F~~~~~~~vll~~~~~~ 101 (138)
..|+..+.+++... .+.++|||+++...++.+.+.|...++.+..+||++++.+|.++++.|++++.. +|++|+++
T Consensus 265 ~~~~~~l~~~~~~~--~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~--vlv~T~~~ 340 (414)
T 3eiq_A 265 EWKLDTLCDLYETL--TITQAVIFINTRRKVDWLTEKMHARDFTVSAMHGDMDQKERDVIMREFRSGSSR--VLITTDLL 340 (414)
T ss_dssp TTHHHHHHHHHHSS--CCSSCEEECSCHHHHHHHHHHHHTTTCCCEEC---CHHHHHHHHHHHHSCC-----CEEECSSC
T ss_pred HhHHHHHHHHHHhC--CCCcEEEEeCCHHHHHHHHHHHHhcCCeEEEecCCCCHHHHHHHHHHHHcCCCc--EEEECCcc
Confidence 34777777777643 456999999999999999999999999999999999999999999999987643 78899999
Q ss_pred ccccCcCccCEEEEeCCCCCccchhHHHHHHhhcCCC
Q psy2046 102 GLGINLTAADTVIIHDVDFNPYNDKQAEDRCHRVGQT 138 (138)
Q Consensus 102 ~~Gl~l~~~~~vi~~~~~~~~~~~~Q~~gR~~R~GQt 138 (138)
++|+|++++++||++++||++..|.||+||++|.|++
T Consensus 341 ~~Gidip~v~~Vi~~~~p~s~~~~~Qr~GR~gR~g~~ 377 (414)
T 3eiq_A 341 ARGIDVQQVSLVINYDLPTNRENYIHRIGRGGRFGRK 377 (414)
T ss_dssp C--CCGGGCSCEEESSCCSSTHHHHHHSCCC------
T ss_pred ccCCCccCCCEEEEeCCCCCHHHhhhhcCcccCCCCC
Confidence 9999999999999999999999999999999999973
No 31
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=99.84 E-value=9.5e-21 Score=146.09 Aligned_cols=99 Identities=15% Similarity=0.125 Sum_probs=93.8
Q ss_pred CCCeEEEEeccHHHHHHHHHHHhhcCCeEEEEeCCCChHHHHHHHHHHhcCCCceEEEEeccccccccCcCccCEEEEeC
Q psy2046 38 NGHRVLIFSQFIFVLDILGHYMDIRGWRHLRLDGATQVSSRQELIDEYNRDQDLFAFLLSTKAGGLGINLTAADTVIIHD 117 (138)
Q Consensus 38 ~~~k~iif~~~~~~~~~l~~~l~~~g~~~~~i~g~~~~~~R~~~~~~F~~~~~~~vll~~~~~~~~Gl~l~~~~~vi~~~ 117 (138)
.+.++|||+++...++.+...|...|+.+..+||++++.+|.+++++|++++.. +|++|+++++|+|+++++.||+++
T Consensus 266 ~~~~~IVf~~sr~~~e~la~~L~~~g~~~~~~h~~l~~~~R~~~~~~F~~g~~~--VlVAT~a~~~GID~p~V~~VI~~~ 343 (591)
T 2v1x_A 266 KGQSGIIYCFSQKDSEQVTVSLQNLGIHAGAYHANLEPEDKTTVHRKWSANEIQ--VVVATVAFGMGIDKPDVRFVIHHS 343 (591)
T ss_dssp TTCEEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTSSS--EEEECTTSCTTCCCSCEEEEEESS
T ss_pred cCCCeEEEeCcHHHHHHHHHHHHHCCCCEEEecCCCCHHHHHHHHHHHHcCCCe--EEEEechhhcCCCcccccEEEEeC
Confidence 467999999999999999999999999999999999999999999999988654 788999999999999999999999
Q ss_pred CCCCccchhHHHHHHhhcCCC
Q psy2046 118 VDFNPYNDKQAEDRCHRVGQT 138 (138)
Q Consensus 118 ~~~~~~~~~Q~~gR~~R~GQt 138 (138)
+|++...|.|++||++|.|+.
T Consensus 344 ~p~s~~~y~Qr~GRaGR~G~~ 364 (591)
T 2v1x_A 344 MSKSMENYYQESGRAGRDDMK 364 (591)
T ss_dssp CCSSHHHHHHHHTTSCTTSSC
T ss_pred CCCCHHHHHHHhccCCcCCCC
Confidence 999999999999999999973
No 32
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A*
Probab=99.84 E-value=1.3e-21 Score=146.93 Aligned_cols=110 Identities=17% Similarity=0.210 Sum_probs=98.5
Q ss_pred ccCchHHHHHHHHHHhhhCCCeEEEEeccHHHHHHHHHHHhhcCCeEEEEeCCCChHHHHHHHHHHhcCCCceEEEEecc
Q psy2046 20 VESGKLKKLDEILPDLKKNGHRVLIFSQFIFVLDILGHYMDIRGWRHLRLDGATQVSSRQELIDEYNRDQDLFAFLLSTK 99 (138)
Q Consensus 20 ~~s~K~~~l~~ll~~~~~~~~k~iif~~~~~~~~~l~~~l~~~g~~~~~i~g~~~~~~R~~~~~~F~~~~~~~vll~~~~ 99 (138)
..+.|+..+.+++.. ..+.++|||+++...++.+.+.|. +..+||+++..+|.+++++|++++.. +|++|+
T Consensus 332 ~~~~k~~~l~~~l~~--~~~~k~lvF~~~~~~~~~l~~~l~-----~~~~~g~~~~~~R~~~~~~F~~g~~~--vLv~T~ 402 (472)
T 2fwr_A 332 NSKNKIRKLREILER--HRKDKIIIFTRHNELVYRISKVFL-----IPAITHRTSREEREEILEGFRTGRFR--AIVSSQ 402 (472)
T ss_dssp SCSHHHHHHHHHHHH--TSSSCBCCBCSCHHHHHHHHHHTT-----CCBCCSSSCSHHHHTHHHHHHHSSCS--BCBCSS
T ss_pred cChHHHHHHHHHHHh--CCCCcEEEEECCHHHHHHHHHHhC-----cceeeCCCCHHHHHHHHHHHhCCCCC--EEEEcC
Confidence 456788888888876 457899999999999999999985 45789999999999999999987654 678899
Q ss_pred ccccccCcCccCEEEEeCCCCCccchhHHHHHHhhcCCC
Q psy2046 100 AGGLGINLTAADTVIIHDVDFNPYNDKQAEDRCHRVGQT 138 (138)
Q Consensus 100 ~~~~Gl~l~~~~~vi~~~~~~~~~~~~Q~~gR~~R~GQt 138 (138)
++++|+|++.++.||+++++|++..+.|++||++|.||.
T Consensus 403 ~~~~Gldlp~~~~Vi~~~~~~s~~~~~Q~~GR~~R~g~~ 441 (472)
T 2fwr_A 403 VLDEGIDVPDANVGVIMSGSGSAREYIQRLGRILRPSKG 441 (472)
T ss_dssp CCCSSSCSCCBSEEEEECCSSCCHHHHHHHHHSBCCCTT
T ss_pred chhcCcccccCcEEEEECCCCCHHHHHHHHhhccCCCCC
Confidence 999999999999999999999999999999999999973
No 33
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=99.84 E-value=2.5e-20 Score=143.32 Aligned_cols=100 Identities=18% Similarity=0.295 Sum_probs=93.3
Q ss_pred hCCCeEEEEeccHHHHHHHHHHHhhc---CCeEEEEeCCCChHHHHHHHHHHhcCCCceEEEEeccccccccCcCccCEE
Q psy2046 37 KNGHRVLIFSQFIFVLDILGHYMDIR---GWRHLRLDGATQVSSRQELIDEYNRDQDLFAFLLSTKAGGLGINLTAADTV 113 (138)
Q Consensus 37 ~~~~k~iif~~~~~~~~~l~~~l~~~---g~~~~~i~g~~~~~~R~~~~~~F~~~~~~~vll~~~~~~~~Gl~l~~~~~v 113 (138)
..+.++|||+++...++.+...|... ++++..+||++++.+|.+++++|++++.. +|++|+++++|+|++++++|
T Consensus 286 ~~~~~~iVF~~t~~~~~~l~~~L~~~~~~~~~v~~~hg~~~~~~R~~~~~~F~~g~~~--vLVaT~~~~~GiDip~v~~V 363 (579)
T 3sqw_A 286 DSNYKAIIFAPTVKFTSFLCSILKNEFKKDLPILEFHGKITQNKRTSLVKRFKKDESG--ILVCTDVGARGMDFPNVHEV 363 (579)
T ss_dssp TTCCEEEEECSSHHHHHHHHHHHHHHHTTTSCEEEESTTSCHHHHHHHHHHHHHCSSE--EEEECGGGTSSCCCTTCCEE
T ss_pred CCCCcEEEECCcHHHHHHHHHHHHHhhcCCCcEEEecCCCCHHHHHHHHHHhhcCCCe--EEEEcchhhcCCCcccCCEE
Confidence 34679999999999999999999887 89999999999999999999999988654 78899999999999999999
Q ss_pred EEeCCCCCccchhHHHHHHhhcCCC
Q psy2046 114 IIHDVDFNPYNDKQAEDRCHRVGQT 138 (138)
Q Consensus 114 i~~~~~~~~~~~~Q~~gR~~R~GQt 138 (138)
|++++|+++..|.|++||++|.|+.
T Consensus 364 I~~~~p~s~~~y~Qr~GRagR~g~~ 388 (579)
T 3sqw_A 364 LQIGVPSELANYIHRIGRTARSGKE 388 (579)
T ss_dssp EEESCCSSTTHHHHHHTTSSCTTCC
T ss_pred EEcCCCCCHHHhhhhccccccCCCC
Confidence 9999999999999999999999973
No 34
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=99.84 E-value=3.6e-20 Score=141.70 Aligned_cols=100 Identities=18% Similarity=0.295 Sum_probs=93.3
Q ss_pred hCCCeEEEEeccHHHHHHHHHHHhhc---CCeEEEEeCCCChHHHHHHHHHHhcCCCceEEEEeccccccccCcCccCEE
Q psy2046 37 KNGHRVLIFSQFIFVLDILGHYMDIR---GWRHLRLDGATQVSSRQELIDEYNRDQDLFAFLLSTKAGGLGINLTAADTV 113 (138)
Q Consensus 37 ~~~~k~iif~~~~~~~~~l~~~l~~~---g~~~~~i~g~~~~~~R~~~~~~F~~~~~~~vll~~~~~~~~Gl~l~~~~~v 113 (138)
..+.++|||+++...++.++..|... ++++..+||++++.+|.++++.|++++.. +|++|+++++|+|++++++|
T Consensus 337 ~~~~~~iVF~~s~~~~~~l~~~L~~~~~~~~~v~~~h~~~~~~~R~~~~~~f~~g~~~--vLvaT~~~~~GiDip~v~~V 414 (563)
T 3i5x_A 337 DSNYKAIIFAPTVKFTSFLCSILKNEFKKDLPILEFHGKITQNKRTSLVKRFKKDESG--ILVCTDVGARGMDFPNVHEV 414 (563)
T ss_dssp TTCCEEEEECSCHHHHHHHHHHHHHHHTTTSCEEEESTTSCHHHHHHHHHHHHHCSSE--EEEECGGGTSSCCCTTCCEE
T ss_pred CCCCcEEEEcCcHHHHHHHHHHHHHhccCCceEEEecCCCCHHHHHHHHHHHhcCCCC--EEEEcchhhcCCCcccCCEE
Confidence 34679999999999999999999887 89999999999999999999999988654 88899999999999999999
Q ss_pred EEeCCCCCccchhHHHHHHhhcCCC
Q psy2046 114 IIHDVDFNPYNDKQAEDRCHRVGQT 138 (138)
Q Consensus 114 i~~~~~~~~~~~~Q~~gR~~R~GQt 138 (138)
|++++|+++..|.|++||++|.|+.
T Consensus 415 I~~~~p~s~~~y~Qr~GRagR~g~~ 439 (563)
T 3i5x_A 415 LQIGVPSELANYIHRIGRTARSGKE 439 (563)
T ss_dssp EEESCCSSTTHHHHHHTTSSCTTCC
T ss_pred EEECCCCchhhhhhhcCccccCCCC
Confidence 9999999999999999999999963
No 35
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A*
Probab=99.83 E-value=5.8e-21 Score=149.14 Aligned_cols=113 Identities=19% Similarity=0.245 Sum_probs=69.7
Q ss_pred cCchHHHHHHHHHHhh--hCCCeEEEEeccHHHHHHHHHHHhhcC----CeEEEEe--------CCCChHHHHHHHHHHh
Q psy2046 21 ESGKLKKLDEILPDLK--KNGHRVLIFSQFIFVLDILGHYMDIRG----WRHLRLD--------GATQVSSRQELIDEYN 86 (138)
Q Consensus 21 ~s~K~~~l~~ll~~~~--~~~~k~iif~~~~~~~~~l~~~l~~~g----~~~~~i~--------g~~~~~~R~~~~~~F~ 86 (138)
.+.|+..+.+++.... ..+.++|||+++...++.|.+.|...| +++..++ |++++.+|.+++++|+
T Consensus 378 ~~~k~~~L~~ll~~~~~~~~~~~~IIF~~~~~~~~~l~~~L~~~~~~~~~~~~~l~G~~~~~~h~~~~~~eR~~v~~~F~ 457 (696)
T 2ykg_A 378 ENPKLEDLCFILQEEYHLNPETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFK 457 (696)
T ss_dssp CCHHHHHHHHHHHHHHTTCTTCCEEEECSCHHHHHHHHHHHHHCTTCCSCCEEC--------------------------
T ss_pred CCHHHHHHHHHHHHHhccCCCCcEEEEeCcHHHHHHHHHHHHhCCCccccceeEEEccCCCccccCCCHHHHHHHHHHHH
Confidence 5789999999998764 246799999999999999999999988 8888885 5999999999999999
Q ss_pred c-CCCceEEEEeccccccccCcCccCEEEEeCCCCCccchhHHHHHHhhcC
Q psy2046 87 R-DQDLFAFLLSTKAGGLGINLTAADTVIIHDVDFNPYNDKQAEDRCHRVG 136 (138)
Q Consensus 87 ~-~~~~~vll~~~~~~~~Gl~l~~~~~vi~~~~~~~~~~~~Q~~gR~~R~G 136 (138)
+ ++.. +|++|+++++|+|++++++||+||+||++..|.||+|| +|.+
T Consensus 458 ~~g~~~--vLVaT~v~~~GiDip~v~~VI~~d~p~s~~~~~Qr~GR-GR~~ 505 (696)
T 2ykg_A 458 ASGDHN--ILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGR-GRAR 505 (696)
T ss_dssp ---CCS--CSEEEESSCCC---CCCSEEEEESCC--CCCC----------C
T ss_pred hcCCcc--EEEEechhhcCCcCccCCEEEEeCCCCCHHHHHHhhcc-CcCC
Confidence 7 6543 67899999999999999999999999999999999999 9963
No 36
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4}
Probab=99.82 E-value=6.9e-20 Score=138.68 Aligned_cols=113 Identities=10% Similarity=0.083 Sum_probs=97.3
Q ss_pred chHHHHHHHHHHhhhC-CCeEEEEeccHHHHHHHHHHHhhcCCeEEEEeCCCChHHHHHHHHHHhcCCCceEEEEec-cc
Q psy2046 23 GKLKKLDEILPDLKKN-GHRVLIFSQFIFVLDILGHYMDIRGWRHLRLDGATQVSSRQELIDEYNRDQDLFAFLLST-KA 100 (138)
Q Consensus 23 ~K~~~l~~ll~~~~~~-~~k~iif~~~~~~~~~l~~~l~~~g~~~~~i~g~~~~~~R~~~~~~F~~~~~~~vll~~~-~~ 100 (138)
.|...+.+++...... +.++|||+. ...++.+.+.|...+.++..+||+++..+|.++++.|++++.. +|++| ++
T Consensus 331 ~~~~~l~~~l~~~~~~~~~~~ivf~~-~~~~~~l~~~L~~~~~~v~~~~g~~~~~~r~~i~~~f~~g~~~--vLv~T~~~ 407 (510)
T 2oca_A 331 KRNKWIAKLAIKLAQKDENAFVMFKH-VSHGKAIFDLIKNEYDKVYYVSGEVDTETRNIMKTLAENGKGI--IIVASYGV 407 (510)
T ss_dssp HHHHHHHHHHHHHHTTTCEEEEEESS-HHHHHHHHHHHHTTCSSEEEESSSTTHHHHHHHHHHHHHCCSC--EEEEEHHH
T ss_pred HHHHHHHHHHHHHHhcCCCeEEEEec-HHHHHHHHHHHHHcCCCeEEEECCCCHHHHHHHHHHHhCCCCC--EEEEEcCh
Confidence 4556677777665544 456777777 7888889999999888999999999999999999999988654 56666 99
Q ss_pred cccccCcCccCEEEEeCCCCCccchhHHHHHHhhcCCC
Q psy2046 101 GGLGINLTAADTVIIHDVDFNPYNDKQAEDRCHRVGQT 138 (138)
Q Consensus 101 ~~~Gl~l~~~~~vi~~~~~~~~~~~~Q~~gR~~R~GQt 138 (138)
+++|+|++++++||+++++|++..+.|++||++|.|+.
T Consensus 408 ~~~GiDip~v~~vi~~~~~~s~~~~~Q~~GR~gR~g~~ 445 (510)
T 2oca_A 408 FSTGISVKNLHHVVLAHGVKSKIIVLQTIGRVLRKHGS 445 (510)
T ss_dssp HHHSCCCCSEEEEEESSCCCSCCHHHHHHHHHHTTTCC
T ss_pred hhcccccccCcEEEEeCCCCCHHHHHHHHhcccccCCC
Confidence 99999999999999999999999999999999999974
No 37
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=99.82 E-value=2.6e-20 Score=133.59 Aligned_cols=96 Identities=20% Similarity=0.285 Sum_probs=88.7
Q ss_pred hCCCeEEEEeccHHHHHHHHHHHhhcCCeEEEEeCCCChHHHHHHHHHHhcCCCceEEEEeccccccccCcCccCEEEEe
Q psy2046 37 KNGHRVLIFSQFIFVLDILGHYMDIRGWRHLRLDGATQVSSRQELIDEYNRDQDLFAFLLSTKAGGLGINLTAADTVIIH 116 (138)
Q Consensus 37 ~~~~k~iif~~~~~~~~~l~~~l~~~g~~~~~i~g~~~~~~R~~~~~~F~~~~~~~vll~~~~~~~~Gl~l~~~~~vi~~ 116 (138)
..+.++|||+++.+.++.+.+.|+ .+..+||+++..+|.+++++|++++.. +|++|+++++|+|++++++||++
T Consensus 218 ~~~~~~lvf~~~~~~~~~l~~~l~----~~~~~~~~~~~~~r~~~~~~f~~~~~~--vlv~T~~~~~Gid~~~~~~Vi~~ 291 (337)
T 2z0m_A 218 NKDKGVIVFVRTRNRVAKLVRLFD----NAIELRGDLPQSVRNRNIDAFREGEYD--MLITTDVASRGLDIPLVEKVINF 291 (337)
T ss_dssp CCCSSEEEECSCHHHHHHHHTTCT----TEEEECTTSCHHHHHHHHHHHHTTSCS--EEEECHHHHTTCCCCCBSEEEES
T ss_pred CCCCcEEEEEcCHHHHHHHHHHhh----hhhhhcCCCCHHHHHHHHHHHHcCCCc--EEEEcCccccCCCccCCCEEEEe
Confidence 456799999999999999999987 578999999999999999999988654 78889999999999999999999
Q ss_pred CCCCCccchhHHHHHHhhcCCC
Q psy2046 117 DVDFNPYNDKQAEDRCHRVGQT 138 (138)
Q Consensus 117 ~~~~~~~~~~Q~~gR~~R~GQt 138 (138)
++||++..|.|++||++|.||+
T Consensus 292 ~~~~s~~~~~Q~~GR~gR~g~~ 313 (337)
T 2z0m_A 292 DAPQDLRTYIHRIGRTGRMGRK 313 (337)
T ss_dssp SCCSSHHHHHHHHTTBCGGGCC
T ss_pred cCCCCHHHhhHhcCccccCCCC
Confidence 9999999999999999999974
No 38
>3hgt_A HDA1 complex subunit 3; RECA-like domain, SWI2/SNF2 helical domain, chromatin regulator, coiled coil, nucleus, repressor, transcription; 2.20A {Saccharomyces cerevisiae} PDB: 3hgq_A
Probab=99.82 E-value=1.3e-20 Score=134.74 Aligned_cols=114 Identities=18% Similarity=0.125 Sum_probs=89.9
Q ss_pred ccccCchHHHHHHHHHHhhhCCCeEEEEeccHHHHHHHHHHHhhcCCeEEEEeCCCChHHHHHHHHHHhcCCCceEEEEe
Q psy2046 18 LVVESGKLKKLDEILPDLKKNGHRVLIFSQFIFVLDILGHYMDIRGWRHLRLDGATQVSSRQELIDEYNRDQDLFAFLLS 97 (138)
Q Consensus 18 ~~~~s~K~~~l~~ll~~~~~~~~k~iif~~~~~~~~~l~~~l~~~g~~~~~i~g~~~~~~R~~~~~~F~~~~~~~vll~~ 97 (138)
+.+.|+|+..|.++|..+.+.+.|++||+++..++|.+++++...|+++..++|+.... +.+. .+....+.|+
T Consensus 104 l~~~SGKf~~L~~LL~~l~~~~~kVLIfsq~t~~LDilE~~l~~~~~~y~RlDG~~~~~-~~k~-----~~~~~~i~Ll- 176 (328)
T 3hgt_A 104 LAENSGKFSVLRDLINLVQEYETETAIVCRPGRTMDLLEALLLGNKVHIKRYDGHSIKS-AAAA-----NDFSCTVHLF- 176 (328)
T ss_dssp HHHTCHHHHHHHHHHHHHTTSCEEEEEEECSTHHHHHHHHHHTTSSCEEEESSSCCC-------------CCSEEEEEE-
T ss_pred HHHcCccHHHHHHHHHHHHhCCCEEEEEECChhHHHHHHHHHhcCCCceEeCCCCchhh-hhhc-----ccCCceEEEE-
Confidence 45679999999999999999999999999999999999999999999999999995533 2221 1234455665
Q ss_pred ccccccccC-----cCccCEEEEeCCCCCccch-hHHHHHHhhc--CCC
Q psy2046 98 TKAGGLGIN-----LTAADTVIIHDVDFNPYND-KQAEDRCHRV--GQT 138 (138)
Q Consensus 98 ~~~~~~Gl~-----l~~~~~vi~~~~~~~~~~~-~Q~~gR~~R~--GQt 138 (138)
+.++|.|+| +..|+.||.||+.|||... .|++.|+||+ ||+
T Consensus 177 tsag~~gin~~~~nl~~aD~VI~~DsdwNp~~d~iQa~~r~~R~~~gq~ 225 (328)
T 3hgt_A 177 SSEGINFTKYPIKSKARFDMLICLDTTVDTSQKDIQYLLQYKRERKGLE 225 (328)
T ss_dssp ESSCCCTTTSCCCCCSCCSEEEECSTTCCTTSHHHHHHHCCC-------
T ss_pred ECCCCCCcCcccccCCCCCEEEEECCCCCCCChHHHHHHHHhhhccCCC
Confidence 567777775 8999999999999999997 8999999999 553
No 39
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=99.81 E-value=1.1e-21 Score=143.54 Aligned_cols=111 Identities=18% Similarity=0.210 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHhhhCCCeEEEEeccHHHHHHHHHHHhhcCCeEEEEeCCCChHHHHHHHHHHhcCCCceEEEEecccccc
Q psy2046 24 KLKKLDEILPDLKKNGHRVLIFSQFIFVLDILGHYMDIRGWRHLRLDGATQVSSRQELIDEYNRDQDLFAFLLSTKAGGL 103 (138)
Q Consensus 24 K~~~l~~ll~~~~~~~~k~iif~~~~~~~~~l~~~l~~~g~~~~~i~g~~~~~~R~~~~~~F~~~~~~~vll~~~~~~~~ 103 (138)
|...+.+++... .+.++|||+++...++.+.+.|+..++.+..+||+++..+|.++++.|++++.. +|++|+++++
T Consensus 246 ~~~~l~~~~~~~--~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~--vlv~T~~~~~ 321 (394)
T 1fuu_A 246 KYECLTDLYDSI--SVTQAVIFCNTRRKVEELTTKLRNDKFTVSAIYSDLPQQERDTIMKEFRSGSSR--ILISTDLLAR 321 (394)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHhcC--CCCcEEEEECCHHHHHHHHHHHHHcCCeEEEeeCCCCHHHHHHHHHHHHCCCCc--EEEECChhhc
Confidence 555566665532 356999999999999999999999999999999999999999999999887543 7789999999
Q ss_pred ccCcCccCEEEEeCCCCCccchhHHHHHHhhcCCC
Q psy2046 104 GINLTAADTVIIHDVDFNPYNDKQAEDRCHRVGQT 138 (138)
Q Consensus 104 Gl~l~~~~~vi~~~~~~~~~~~~Q~~gR~~R~GQt 138 (138)
|+|++++++||++++||++..|.|++||++|.||+
T Consensus 322 Gldi~~~~~Vi~~~~p~s~~~~~Qr~GR~~R~g~~ 356 (394)
T 1fuu_A 322 GIDVQQVSLVINYDLPANKENYIHRIGRGGRFGRK 356 (394)
T ss_dssp -----------------------------------
T ss_pred CCCcccCCEEEEeCCCCCHHHHHHHcCcccCCCCC
Confidence 99999999999999999999999999999999974
No 40
>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A*
Probab=99.78 E-value=1.7e-18 Score=135.08 Aligned_cols=113 Identities=19% Similarity=0.155 Sum_probs=102.6
Q ss_pred CchHHHHHHHHHHhhhCCCeEEEEeccHHHHHHHHHHHhhcCCeEEEEeCCCChHHHHHHHHHHhcCCCceEEEEecccc
Q psy2046 22 SGKLKKLDEILPDLKKNGHRVLIFSQFIFVLDILGHYMDIRGWRHLRLDGATQVSSRQELIDEYNRDQDLFAFLLSTKAG 101 (138)
Q Consensus 22 s~K~~~l~~ll~~~~~~~~k~iif~~~~~~~~~l~~~l~~~g~~~~~i~g~~~~~~R~~~~~~F~~~~~~~vll~~~~~~ 101 (138)
..++..+...+....+.+.++|||+++....+.|.+.|...|+++..+||++++.+|.+++++|+.+... +|++|+++
T Consensus 422 ~~~~~~Ll~~l~~~~~~~~~vlVf~~t~~~ae~L~~~L~~~gi~~~~lh~~~~~~~R~~~~~~f~~g~~~--VLvaT~~l 499 (664)
T 1c4o_A 422 ENQILDLMEGIRERAARGERTLVTVLTVRMAEELTSFLVEHGIRARYLHHELDAFKRQALIRDLRLGHYD--CLVGINLL 499 (664)
T ss_dssp TTHHHHHHHHHHHHHHTTCEEEEECSSHHHHHHHHHHHHHTTCCEEEECTTCCHHHHHHHHHHHHTTSCS--EEEESCCC
T ss_pred cchHHHHHHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHhcCCCceeecCCCCHHHHHHHHHHhhcCCce--EEEccChh
Confidence 3567777777776667788999999999999999999999999999999999999999999999987654 78899999
Q ss_pred ccccCcCccCEEEEeCC-----CCCccchhHHHHHHhhcC
Q psy2046 102 GLGINLTAADTVIIHDV-----DFNPYNDKQAEDRCHRVG 136 (138)
Q Consensus 102 ~~Gl~l~~~~~vi~~~~-----~~~~~~~~Q~~gR~~R~G 136 (138)
++|+|++.++.||++|. |+++..|.|++||++|.|
T Consensus 500 ~~GlDip~v~lVI~~d~d~~G~p~s~~~~iQr~GRagR~~ 539 (664)
T 1c4o_A 500 REGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAARNA 539 (664)
T ss_dssp CTTCCCTTEEEEEETTTTSCSGGGSHHHHHHHHGGGTTST
T ss_pred hcCccCCCCCEEEEeCCcccCCCCCHHHHHHHHCccCcCC
Confidence 99999999999999997 889999999999999986
No 41
>1tf5_A Preprotein translocase SECA subunit; ATPase, helicase, translocation, secretion, protein transport; 2.18A {Bacillus subtilis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1tf2_A 3iqy_A 1m6n_A 1m74_A* 3iqm_A 3jv2_A* 2ibm_A* 3dl8_A 1sx0_A 1sx1_A 1tm6_A
Probab=99.78 E-value=3.7e-19 Score=140.05 Aligned_cols=115 Identities=17% Similarity=0.228 Sum_probs=100.1
Q ss_pred ccCchHHHHHHHHHHhhhCCCeEEEEeccHHHHHHHHHHHhhcCCeEEEEeCCCChHHHHHHHHHHhcCCCceEEEEecc
Q psy2046 20 VESGKLKKLDEILPDLKKNGHRVLIFSQFIFVLDILGHYMDIRGWRHLRLDGATQVSSRQELIDEYNRDQDLFAFLLSTK 99 (138)
Q Consensus 20 ~~s~K~~~l~~ll~~~~~~~~k~iif~~~~~~~~~l~~~l~~~g~~~~~i~g~~~~~~R~~~~~~F~~~~~~~vll~~~~ 99 (138)
....|...+.+.+......+.++||||.++...+.|+..|...|+++..+||...+.+|..+..+|+.+ . ++++|+
T Consensus 413 ~~~~K~~al~~~i~~~~~~~~pvLVft~s~~~se~Ls~~L~~~gi~~~vLhg~~~~rEr~ii~~ag~~g---~-VlIATd 488 (844)
T 1tf5_A 413 TMEGKFKAVAEDVAQRYMTGQPVLVGTVAVETSELISKLLKNKGIPHQVLNAKNHEREAQIIEEAGQKG---A-VTIATN 488 (844)
T ss_dssp SHHHHHHHHHHHHHHHHHHTCCEEEEESCHHHHHHHHHHHHTTTCCCEEECSSCHHHHHHHHTTTTSTT---C-EEEEET
T ss_pred CHHHHHHHHHHHHHHHHhcCCcEEEEECCHHHHHHHHHHHHHCCCCEEEeeCCccHHHHHHHHHcCCCC---e-EEEeCC
Confidence 345788888888877666788999999999999999999999999999999998777776555555443 2 688899
Q ss_pred ccccccCcC--------ccCEEEEeCCCCCccchhHHHHHHhhcCCC
Q psy2046 100 AGGLGINLT--------AADTVIIHDVDFNPYNDKQAEDRCHRVGQT 138 (138)
Q Consensus 100 ~~~~Gl~l~--------~~~~vi~~~~~~~~~~~~Q~~gR~~R~GQt 138 (138)
++|+|+|++ +..+||+++.|-++..|.|++||++|.|..
T Consensus 489 mAgRG~DI~l~~~V~~~ggl~VIn~d~p~s~r~y~hr~GRTGRqG~~ 535 (844)
T 1tf5_A 489 MAGRGTDIKLGEGVKELGGLAVVGTERHESRRIDNQLRGRSGRQGDP 535 (844)
T ss_dssp TSSTTCCCCCCTTSGGGTSEEEEESSCCSSHHHHHHHHTTSSGGGCC
T ss_pred ccccCcCccccchhhhcCCcEEEEecCCCCHHHHHhhcCccccCCCC
Confidence 999999999 788999999999999999999999999963
No 42
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens}
Probab=99.77 E-value=2.2e-20 Score=140.50 Aligned_cols=112 Identities=19% Similarity=0.277 Sum_probs=0.0
Q ss_pred CchHHHHHHHHHHhhhCCCeEEEEeccHHHHHHHHHHHhhcCCeEEEEeCCCChHHHHHHHHHHhcCCCceEEEEecccc
Q psy2046 22 SGKLKKLDEILPDLKKNGHRVLIFSQFIFVLDILGHYMDIRGWRHLRLDGATQVSSRQELIDEYNRDQDLFAFLLSTKAG 101 (138)
Q Consensus 22 s~K~~~l~~ll~~~~~~~~k~iif~~~~~~~~~l~~~l~~~g~~~~~i~g~~~~~~R~~~~~~F~~~~~~~vll~~~~~~ 101 (138)
..|...+.+++... .+.++||||++...++.+...|...++.+..+||++++.+|.++++.|++++.. +|++|+++
T Consensus 318 ~~~~~~l~~~~~~~--~~~~~lvF~~s~~~~~~l~~~L~~~~~~v~~lh~~~~~~~R~~~~~~f~~g~~~--iLv~T~~~ 393 (479)
T 3fmp_B 318 DEKFQALCNLYGAI--TIAQAMIFCHTRKTASWLAAELSKEGHQVALLSGEMMVEQRAAVIERFREGKEK--VLVTTNVC 393 (479)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHhhc--cCCceEEEeCcHHHHHHHHHHHHhCCccEEEecCCCCHHHHHHHHHHHHcCCCc--EEEEcccc
Confidence 34566666665532 356899999999999999999999999999999999999999999999988654 78899999
Q ss_pred ccccCcCccCEEEEeCCCCCc------cchhHHHHHHhhcCC
Q psy2046 102 GLGINLTAADTVIIHDVDFNP------YNDKQAEDRCHRVGQ 137 (138)
Q Consensus 102 ~~Gl~l~~~~~vi~~~~~~~~------~~~~Q~~gR~~R~GQ 137 (138)
++|+|++++++||++|+|+++ ..|.||+||++|.|+
T Consensus 394 ~~GlDip~v~~VI~~d~p~~~~~~~s~~~~~Qr~GRagR~g~ 435 (479)
T 3fmp_B 394 ARGIDVEQVSVVINFDLPVDKDGNPDNETYLHRIGRTGRFGK 435 (479)
T ss_dssp ------------------------------------------
T ss_pred ccCCccccCCEEEEecCCCCCccCCCHHHHHHHhcccccCCC
Confidence 999999999999999999865 689999999999986
No 43
>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B*
Probab=99.77 E-value=4e-18 Score=132.93 Aligned_cols=113 Identities=18% Similarity=0.149 Sum_probs=101.8
Q ss_pred CchHHHHHHHHHHhhhCCCeEEEEeccHHHHHHHHHHHhhcCCeEEEEeCCCChHHHHHHHHHHhcCCCceEEEEecccc
Q psy2046 22 SGKLKKLDEILPDLKKNGHRVLIFSQFIFVLDILGHYMDIRGWRHLRLDGATQVSSRQELIDEYNRDQDLFAFLLSTKAG 101 (138)
Q Consensus 22 s~K~~~l~~ll~~~~~~~~k~iif~~~~~~~~~l~~~l~~~g~~~~~i~g~~~~~~R~~~~~~F~~~~~~~vll~~~~~~ 101 (138)
..++..+...+......+.++|||+++....+.|...|...|+++..+||++++.+|.+++++|++++.. +|++|+++
T Consensus 428 ~~~~~~Ll~~l~~~~~~~~~vlVf~~t~~~ae~L~~~L~~~gi~~~~lh~~~~~~~R~~~l~~f~~g~~~--VLVaT~~l 505 (661)
T 2d7d_A 428 EGQIDDLIGEIQARIERNERVLVTTLTKKMSEDLTDYLKEIGIKVNYLHSEIKTLERIEIIRDLRLGKYD--VLVGINLL 505 (661)
T ss_dssp TTHHHHHHHHHHHHHTTTCEEEEECSSHHHHHHHHHHHHHTTCCEEEECTTCCHHHHHHHHHHHHHTSCS--EEEESCCC
T ss_pred cchHHHHHHHHHHHHhcCCeEEEEECCHHHHHHHHHHHHhcCCCeEEEeCCCCHHHHHHHHHHHhcCCeE--EEEecchh
Confidence 3566777676766666788999999999999999999999999999999999999999999999987654 78899999
Q ss_pred ccccCcCccCEEEEeCC-----CCCccchhHHHHHHhhcC
Q psy2046 102 GLGINLTAADTVIIHDV-----DFNPYNDKQAEDRCHRVG 136 (138)
Q Consensus 102 ~~Gl~l~~~~~vi~~~~-----~~~~~~~~Q~~gR~~R~G 136 (138)
++|+|+++++.||++|. |++...|.|++||++|.+
T Consensus 506 ~~GlDip~v~lVi~~d~d~~G~p~s~~~~iQr~GRagR~~ 545 (661)
T 2d7d_A 506 REGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAARNA 545 (661)
T ss_dssp STTCCCTTEEEEEETTTTCCTTTTSHHHHHHHHHTTTTST
T ss_pred hCCcccCCCCEEEEeCcccccCCCCHHHHHHHhCcccCCC
Confidence 99999999999999997 889999999999999963
No 44
>3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus}
Probab=99.77 E-value=6.9e-19 Score=135.51 Aligned_cols=99 Identities=11% Similarity=0.069 Sum_probs=87.4
Q ss_pred CCCeEEEEeccHHHHHHHHHHHhhcCCe--------EEEEeCCCChHHHHHHHHHHhcCCC-ceEEEEeccccccccCcC
Q psy2046 38 NGHRVLIFSQFIFVLDILGHYMDIRGWR--------HLRLDGATQVSSRQELIDEYNRDQD-LFAFLLSTKAGGLGINLT 108 (138)
Q Consensus 38 ~~~k~iif~~~~~~~~~l~~~l~~~g~~--------~~~i~g~~~~~~R~~~~~~F~~~~~-~~vll~~~~~~~~Gl~l~ 108 (138)
.+.|+||||++...++.+...|...+.. +..+||.++ ++|.+++++|++++. ..++|++++++++|+|++
T Consensus 438 ~~~k~lVF~~~~~~a~~l~~~L~~~~~~~~~~~~~~~~~i~g~~~-~~r~~~l~~F~~~~~~~~~ilvtt~~l~~GiDip 516 (590)
T 3h1t_A 438 RFAKTIVFCVDQEHADEMRRALNNLNSDLSRKHPDYVARVTSEEG-KIGKGHLSRFQELETSTPVILTTSQLLTTGVDAP 516 (590)
T ss_dssp TTSEEEEEESSHHHHHHHHHHHHHHTHHHHTTCTTSEEECSSTTH-HHHHHHHHHHHCTTCCCCCEEEESSTTTTTCCCT
T ss_pred CCccEEEEECCHHHHHHHHHHHHHhhhhhhccCCCeEEEEeCCCh-HHHHHHHHHHhCCCCCCCEEEEECChhhcCccch
Confidence 3579999999999999999999876543 678899876 379999999998653 456889999999999999
Q ss_pred ccCEEEEeCCCCCccchhHHHHHHhhcCC
Q psy2046 109 AADTVIIHDVDFNPYNDKQAEDRCHRVGQ 137 (138)
Q Consensus 109 ~~~~vi~~~~~~~~~~~~Q~~gR~~R~GQ 137 (138)
.+++||+++++|++..|.|++||++|.|+
T Consensus 517 ~v~~Vi~~~~~~s~~~~~Q~iGR~~R~~~ 545 (590)
T 3h1t_A 517 TCKNVVLARVVNSMSEFKQIVGRGTRLRE 545 (590)
T ss_dssp TEEEEEEESCCCCHHHHHHHHTTSCCCBG
T ss_pred heeEEEEEecCCChHHHHHHHhhhcccCc
Confidence 99999999999999999999999999874
No 45
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=99.77 E-value=1.1e-18 Score=128.94 Aligned_cols=105 Identities=20% Similarity=0.161 Sum_probs=92.2
Q ss_pred CchHHHHHHHHHHhhhCCCeEEEEeccHHHHHHHHHHHhhcCCeEE-EEeCCCChHHHHHHHHHHhcCCCceEEEEe---
Q psy2046 22 SGKLKKLDEILPDLKKNGHRVLIFSQFIFVLDILGHYMDIRGWRHL-RLDGATQVSSRQELIDEYNRDQDLFAFLLS--- 97 (138)
Q Consensus 22 s~K~~~l~~ll~~~~~~~~k~iif~~~~~~~~~l~~~l~~~g~~~~-~i~g~~~~~~R~~~~~~F~~~~~~~vll~~--- 97 (138)
..|...+.+++.. .+.++|||+++...++.+...|...|+++. .+||. +|. +++|++++.. +|++
T Consensus 238 ~~~~~~l~~~l~~---~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~h~~----~r~--~~~f~~g~~~--vLvat~s 306 (414)
T 3oiy_A 238 SRSKEKLVELLEI---FRDGILIFAQTEEEGKELYEYLKRFKFNVGETWSEF----EKN--FEDFKVGKIN--ILIGVQA 306 (414)
T ss_dssp SCCHHHHHHHHHH---HCSSEEEEESSHHHHHHHHHHHHHTTCCEEESSSCH----HHH--HHHHHTTSCS--EEEEECC
T ss_pred cCHHHHHHHHHHH---cCCCEEEEECCHHHHHHHHHHHHHcCCceehhhcCc----chH--HHHHhCCCCe--EEEEecC
Confidence 3578888888876 357999999999999999999999999998 88884 444 9999988654 5556
Q ss_pred -ccccccccCcCc-cCEEEEeCCC--CCccchhHHHHHHhhcCC
Q psy2046 98 -TKAGGLGINLTA-ADTVIIHDVD--FNPYNDKQAEDRCHRVGQ 137 (138)
Q Consensus 98 -~~~~~~Gl~l~~-~~~vi~~~~~--~~~~~~~Q~~gR~~R~GQ 137 (138)
|+++++|+|+++ +++||++++| +++..|.|++||++|.|+
T Consensus 307 ~T~~~~~GiDip~~v~~VI~~~~p~~~~~~~y~qr~GR~gR~g~ 350 (414)
T 3oiy_A 307 YYGKLTRGVDLPERIKYVIFWGTPSGPDVYTYIQASGRSSRILN 350 (414)
T ss_dssp TTCCCCCCCCCTTTCCEEEEESCCTTTCHHHHHHHHGGGCCEET
T ss_pred cCchhhccCccccccCEEEEECCCCCCCHHHHHHHhCccccCCC
Confidence 999999999999 9999999999 999999999999999985
No 46
>3jux_A Protein translocase subunit SECA; protein translocation, ATPase, conformational change, peptide binding, ATP-binding, cell inner membrane; HET: ADP; 3.10A {Thermotoga maritima} PDB: 3din_A*
Probab=99.75 E-value=2.6e-18 Score=133.58 Aligned_cols=115 Identities=18% Similarity=0.233 Sum_probs=98.1
Q ss_pred ccCchHHHHHHHHHHhhhCCCeEEEEeccHHHHHHHHHHHhhcCCeEEEEeCCCChHHHHHHHHHHhcCCCceEEEEecc
Q psy2046 20 VESGKLKKLDEILPDLKKNGHRVLIFSQFIFVLDILGHYMDIRGWRHLRLDGATQVSSRQELIDEYNRDQDLFAFLLSTK 99 (138)
Q Consensus 20 ~~s~K~~~l~~ll~~~~~~~~k~iif~~~~~~~~~l~~~l~~~g~~~~~i~g~~~~~~R~~~~~~F~~~~~~~vll~~~~ 99 (138)
....|...+.+.+......+.++|||+.++...+.|+..|.+.|+++..+||+..+.++..+..+|+.+ . ++++|+
T Consensus 455 t~~eK~~al~~~I~~~~~~gqpVLVFt~S~e~sE~Ls~~L~~~Gi~~~vLhgkq~~rE~~ii~~ag~~g--~--VtVATd 530 (822)
T 3jux_A 455 TQKEKYEKIVEEIEKRYKKGQPVLVGTTSIEKSELLSSMLKKKGIPHQVLNAKYHEKEAEIVAKAGQKG--M--VTIATN 530 (822)
T ss_dssp SHHHHHHHHHHHHHHHHHHTCCEEEEESSHHHHHHHHHHHHTTTCCCEEECSCHHHHHHHHHHHHHSTT--C--EEEEET
T ss_pred cHHHHHHHHHHHHHHHhhCCCCEEEEECCHHHHHHHHHHHHHCCCCEEEeeCCchHHHHHHHHhCCCCC--e--EEEEcc
Confidence 345788889988887777788999999999999999999999999999999985544554444555444 2 788999
Q ss_pred ccccccCcC--------ccCEEEEeCCCCCccchhHHHHHHhhcCCC
Q psy2046 100 AGGLGINLT--------AADTVIIHDVDFNPYNDKQAEDRCHRVGQT 138 (138)
Q Consensus 100 ~~~~Gl~l~--------~~~~vi~~~~~~~~~~~~Q~~gR~~R~GQt 138 (138)
.+|+|+|+. +..+||+++.|-++..|.|++||++|.|+.
T Consensus 531 mAgRGtDI~lg~~V~~~GglhVInte~Pes~r~y~qriGRTGRqG~~ 577 (822)
T 3jux_A 531 MAGRGTDIKLGPGVAELGGLCIIGTERHESRRIDNQLRGRAGRQGDP 577 (822)
T ss_dssp TTTTTCCCCCCTTTTTTTSCEEEESSCCSSHHHHHHHHTTSSCSSCC
T ss_pred hhhCCcCccCCcchhhcCCCEEEecCCCCCHHHHHHhhCccccCCCC
Confidence 999999998 677999999999999999999999999974
No 47
>3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase, translation termination, binding, hydrolase, membrane, mRNA transport; 2.80A {Schizosaccharomyces pombe}
Probab=99.73 E-value=2.6e-19 Score=135.92 Aligned_cols=112 Identities=20% Similarity=0.241 Sum_probs=80.3
Q ss_pred CchHHHHHHHHHHhhhCCCeEEEEeccHHHHHHHHHHHhhcCCeEEEEeCCCChHHHHHHHHHHhcCCCceEEEEecccc
Q psy2046 22 SGKLKKLDEILPDLKKNGHRVLIFSQFIFVLDILGHYMDIRGWRHLRLDGATQVSSRQELIDEYNRDQDLFAFLLSTKAG 101 (138)
Q Consensus 22 s~K~~~l~~ll~~~~~~~~k~iif~~~~~~~~~l~~~l~~~g~~~~~i~g~~~~~~R~~~~~~F~~~~~~~vll~~~~~~ 101 (138)
..|...+.+++... .+.++|||+++...++.+...|...++.+..+||+++..+|.++++.|++++.. +|++|+++
T Consensus 342 ~~k~~~l~~ll~~~--~~~~~LVF~~s~~~a~~l~~~L~~~~~~v~~~hg~~~~~~R~~il~~f~~g~~~--VLVaT~~l 417 (508)
T 3fho_A 342 EHKYNVLVELYGLL--TIGQSIIFCKKKDTAEEIARRMTADGHTVACLTGNLEGAQRDAIMDSFRVGTSK--VLVTTNVI 417 (508)
T ss_dssp HHHHHHHHHHHC-----CCCEEEBCSSTTTTTHHHHHHTTTTCCCCEEC-----CTTGGGTHHHHSSSCC--CCEECC--
T ss_pred HHHHHHHHHHHHhc--CCCcEEEEECCHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHHCCCCe--EEEeCChh
Confidence 34566666666532 457999999999999999999999999999999999999999999999988654 78899999
Q ss_pred ccccCcCccCEEEEeCCC------CCccchhHHHHHHhhcCC
Q psy2046 102 GLGINLTAADTVIIHDVD------FNPYNDKQAEDRCHRVGQ 137 (138)
Q Consensus 102 ~~Gl~l~~~~~vi~~~~~------~~~~~~~Q~~gR~~R~GQ 137 (138)
++|+|++++++||++++| +++..+.|++||++|.|+
T Consensus 418 ~~GiDip~v~~VI~~~~p~~~~~~~s~~~~~Qr~GRagR~g~ 459 (508)
T 3fho_A 418 ARGIDVSQVNLVVNYDMPLDQAGRPDPQTYLHRIGRTGRFGR 459 (508)
T ss_dssp ---CCCTTCCEEEC----CC-----CTHHHHHTTSCCC----
T ss_pred hcCCCccCCCEEEEECCCCcccCCCCHHHHHHHhhhcCCCCC
Confidence 999999999999999999 788899999999999986
No 48
>2fsf_A Preprotein translocase SECA subunit; ATPase, DNA-RNA helicase, protein translocation, protein transport; 2.00A {Escherichia coli} PDB: 2fsg_A* 2fsh_A* 2fsi_A* 2vda_A 3bxz_A*
Probab=99.73 E-value=8.1e-18 Score=132.40 Aligned_cols=115 Identities=17% Similarity=0.189 Sum_probs=101.9
Q ss_pred ccCchHHHHHHHHHHhhhCCCeEEEEeccHHHHHHHHHHHhhcCCeEEEEeCCCChHHHHHHHHHHhcCCCceEEEEecc
Q psy2046 20 VESGKLKKLDEILPDLKKNGHRVLIFSQFIFVLDILGHYMDIRGWRHLRLDGATQVSSRQELIDEYNRDQDLFAFLLSTK 99 (138)
Q Consensus 20 ~~s~K~~~l~~ll~~~~~~~~k~iif~~~~~~~~~l~~~l~~~g~~~~~i~g~~~~~~R~~~~~~F~~~~~~~vll~~~~ 99 (138)
....|...+.+.+......+.++|||+.++...+.|+..|++.|+++..+||...+.++..+.++|+.+. ++++|+
T Consensus 422 ~~~~K~~al~~~i~~~~~~gqpvLVft~sie~se~Ls~~L~~~gi~~~vLnak~~~rEa~iia~agr~G~----VtIATn 497 (853)
T 2fsf_A 422 TEAEKIQAIIEDIKERTAKGQPVLVGTISIEKSELVSNELTKAGIKHNVLNAKFHANEAAIVAQAGYPAA----VTIATN 497 (853)
T ss_dssp SHHHHHHHHHHHHHHHHTTTCCEEEEESSHHHHHHHHHHHHHTTCCCEECCTTCHHHHHHHHHTTTSTTC----EEEEES
T ss_pred CHHHHHHHHHHHHHHHhcCCCCEEEEECcHHHHHHHHHHHHHCCCCEEEecCChhHHHHHHHHhcCCCCe----EEEecc
Confidence 4457899999988877777889999999999999999999999999999999988777777778887652 788899
Q ss_pred ccccccCcCcc-------------------------------------CEEEEeCCCCCccchhHHHHHHhhcCCC
Q psy2046 100 AGGLGINLTAA-------------------------------------DTVIIHDVDFNPYNDKQAEDRCHRVGQT 138 (138)
Q Consensus 100 ~~~~Gl~l~~~-------------------------------------~~vi~~~~~~~~~~~~Q~~gR~~R~GQt 138 (138)
.+|+|+|+... .|||+++.|-++..|.|++||++|.|..
T Consensus 498 mAgRGtDI~l~gn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GGl~VI~te~pes~riy~qr~GRTGRqGd~ 573 (853)
T 2fsf_A 498 MAGRGTDIVLGGSWQAEVAALENPTAEQIEKIKADWQVRHDAVLEAGGLHIIGTERHESRRIDNQLRGRSGRQGDA 573 (853)
T ss_dssp CCSSCSCCCTTCCHHHHHHHCSSCCSSHHHHHHHHHHHHHHHHHHTTSEEEEESSCCSSHHHHHHHHTTSSGGGCC
T ss_pred cccCCcCccCCCchHhhhhhcccchhHHHHHHHHHhhhhhhHHHhcCCcEEEEccCCCCHHHHHhhccccccCCCC
Confidence 99999999863 6999999999999999999999999963
No 49
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=99.72 E-value=1.7e-17 Score=135.79 Aligned_cols=112 Identities=16% Similarity=0.174 Sum_probs=96.6
Q ss_pred hHHHHHHHHHHhhhCCCeEEEEeccHHHHHHHHHHHhhc--CCeEEEEeCCCChHHHHHHHHHHhcCCCceEEEEecccc
Q psy2046 24 KLKKLDEILPDLKKNGHRVLIFSQFIFVLDILGHYMDIR--GWRHLRLDGATQVSSRQELIDEYNRDQDLFAFLLSTKAG 101 (138)
Q Consensus 24 K~~~l~~ll~~~~~~~~k~iif~~~~~~~~~l~~~l~~~--g~~~~~i~g~~~~~~R~~~~~~F~~~~~~~vll~~~~~~ 101 (138)
+......++.. ...+.+++||++....++.+.+.|+.. +..+..+||++++.+|++++++|++++.. +|++|+++
T Consensus 798 ~~~i~~~il~~-l~~g~qvlvf~~~v~~~~~l~~~L~~~~p~~~v~~lhg~~~~~eR~~il~~F~~g~~~--VLVaT~v~ 874 (1151)
T 2eyq_A 798 SMVVREAILRE-ILRGGQVYYLYNDVENIQKAAERLAELVPEARIAIGHGQMRERELERVMNDFHHQRFN--VLVCTTII 874 (1151)
T ss_dssp HHHHHHHHHHH-HTTTCEEEEECCCSSCHHHHHHHHHHHCTTSCEEECCSSCCHHHHHHHHHHHHTTSCC--EEEESSTT
T ss_pred HHHHHHHHHHH-HhcCCeEEEEECCHHHHHHHHHHHHHhCCCCeEEEEeCCCCHHHHHHHHHHHHcCCCc--EEEECCcc
Confidence 33333344444 456789999999999999999999887 88999999999999999999999987654 78899999
Q ss_pred ccccCcCccCEEEEeCC-CCCccchhHHHHHHhhcCCC
Q psy2046 102 GLGINLTAADTVIIHDV-DFNPYNDKQAEDRCHRVGQT 138 (138)
Q Consensus 102 ~~Gl~l~~~~~vi~~~~-~~~~~~~~Q~~gR~~R~GQt 138 (138)
++|+|++++++||++++ +|+...+.|++||++|.|++
T Consensus 875 e~GiDip~v~~VIi~~~~~~~l~~l~Qr~GRvgR~g~~ 912 (1151)
T 2eyq_A 875 ETGIDIPTANTIIIERADHFGLAQLHQLRGRVGRSHHQ 912 (1151)
T ss_dssp GGGSCCTTEEEEEETTTTSSCHHHHHHHHTTCCBTTBC
T ss_pred eeeecccCCcEEEEeCCCCCCHHHHHHHHhccCcCCCc
Confidence 99999999999999988 58999999999999999863
No 50
>1nkt_A Preprotein translocase SECA 1 subunit; preprotein translocation, ATPase, transmembrane transport, helicase-like motor domain; HET: ADP; 2.60A {Mycobacterium tuberculosis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1nl3_A
Probab=99.71 E-value=4.2e-17 Score=128.85 Aligned_cols=115 Identities=17% Similarity=0.137 Sum_probs=100.2
Q ss_pred ccCchHHHHHHHHHHhhhCCCeEEEEeccHHHHHHHHHHHhhcCCeEEEEeCCCChHHHHHHHHHHhcCCCceEEEEecc
Q psy2046 20 VESGKLKKLDEILPDLKKNGHRVLIFSQFIFVLDILGHYMDIRGWRHLRLDGATQVSSRQELIDEYNRDQDLFAFLLSTK 99 (138)
Q Consensus 20 ~~s~K~~~l~~ll~~~~~~~~k~iif~~~~~~~~~l~~~l~~~g~~~~~i~g~~~~~~R~~~~~~F~~~~~~~vll~~~~ 99 (138)
....|...+.+.+......+.++|||+.+++..+.|+..|++.|+++..+||...+.++..+.++|+.+. ++++|+
T Consensus 441 t~~~K~~al~~~i~~~~~~gqpvLVft~Sie~sE~Ls~~L~~~Gi~~~vLnak~~~rEa~iia~agr~G~----VtIATn 516 (922)
T 1nkt_A 441 TEEAKYIAVVDDVAERYAKGQPVLIGTTSVERSEYLSRQFTKRRIPHNVLNAKYHEQEATIIAVAGRRGG----VTVATN 516 (922)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHHHHHTTCCCEEECSSCHHHHHHHHHTTTSTTC----EEEEET
T ss_pred CHHHHHHHHHHHHHHHHhcCCcEEEEECCHHHHHHHHHHHHHCCCCEEEecCChhHHHHHHHHhcCCCCe----EEEecc
Confidence 3456888888888877778889999999999999999999999999999999987666666667776552 688899
Q ss_pred ccccccCcCcc----------------------------------------------------CEEEEeCCCCCccchhH
Q psy2046 100 AGGLGINLTAA----------------------------------------------------DTVIIHDVDFNPYNDKQ 127 (138)
Q Consensus 100 ~~~~Gl~l~~~----------------------------------------------------~~vi~~~~~~~~~~~~Q 127 (138)
.+|+|+|+... .|||+++.|-+...|.|
T Consensus 517 mAgRGtDI~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GGlhVI~te~pes~riy~q 596 (922)
T 1nkt_A 517 MAGRGTDIVLGGNVDFLTDQRLRERGLDPVETPEEYEAAWHSELPIVKEEASKEAKEVIEAGGLYVLGTERHESRRIDNQ 596 (922)
T ss_dssp TCSTTCCCCTTCCHHHHHHHHHHHTTCCTTTSHHHHHHHHHHHHHHHHHHTTHHHHHHHHTTSEEEEECSCCSSHHHHHH
T ss_pred hhhcCccccCCCCHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHhhhHHHhcCCcEEEeccCCCCHHHHHH
Confidence 99999999854 59999999999999999
Q ss_pred HHHHHhhcCCC
Q psy2046 128 AEDRCHRVGQT 138 (138)
Q Consensus 128 ~~gR~~R~GQt 138 (138)
++||++|.|..
T Consensus 597 r~GRTGRqGdp 607 (922)
T 1nkt_A 597 LRGRSGRQGDP 607 (922)
T ss_dssp HHHTSSGGGCC
T ss_pred HhcccccCCCC
Confidence 99999999963
No 51
>2xgj_A ATP-dependent RNA helicase DOB1; hydrolase-RNA complex, hydrolase, tramp, exosome, DEAD, nucleotide-binding; HET: ADP; 2.90A {Saccharomyces cerevisiae}
Probab=99.69 E-value=8.8e-17 Score=130.17 Aligned_cols=108 Identities=17% Similarity=0.060 Sum_probs=92.7
Q ss_pred HHHHHHHhhhC-CCeEEEEeccHHHHHHHHHHHhhcCCe---------------------------------------EE
Q psy2046 28 LDEILPDLKKN-GHRVLIFSQFIFVLDILGHYMDIRGWR---------------------------------------HL 67 (138)
Q Consensus 28 l~~ll~~~~~~-~~k~iif~~~~~~~~~l~~~l~~~g~~---------------------------------------~~ 67 (138)
+..++..+... +.++|||+++...++.+...|...++. +.
T Consensus 331 l~~l~~~l~~~~~~~~IVF~~sr~~~e~la~~L~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gI~ 410 (1010)
T 2xgj_A 331 IYKIVKMIWKKKYNPVIVFSFSKRDCEELALKMSKLDFNSDDEKEALTKIFNNAIALLPETDRELPQIKHILPLLRRGIG 410 (1010)
T ss_dssp HHHHHHHHHHHTCCSEEEEESSHHHHHHHHHTTTTSCCCCHHHHHHHHHHHHHHHTTSCGGGTTCHHHHHHHHHHHHTEE
T ss_pred HHHHHHHHHhcCCCCEEEEECCHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHhcchhhhcchhHHHHHHHHhCCee
Confidence 44455544443 458999999999999999999775442 67
Q ss_pred EEeCCCChHHHHHHHHHHhcCCCceEEEEeccccccccCcCccCEEEE----eCC----CCCccchhHHHHHHhhcCC
Q psy2046 68 RLDGATQVSSRQELIDEYNRDQDLFAFLLSTKAGGLGINLTAADTVII----HDV----DFNPYNDKQAEDRCHRVGQ 137 (138)
Q Consensus 68 ~i~g~~~~~~R~~~~~~F~~~~~~~vll~~~~~~~~Gl~l~~~~~vi~----~~~----~~~~~~~~Q~~gR~~R~GQ 137 (138)
.+||++++.+|..+++.|+++... +|++|+++++|+|++..+.||. ||. ||++..|.|++||+||.|+
T Consensus 411 ~~Hggl~~~eR~~ve~~F~~G~ik--VLVAT~~la~GIDiP~~~vVI~~~~kfd~~~~rp~s~~~y~Qr~GRAGR~G~ 486 (1010)
T 2xgj_A 411 IHHSGLLPILKEVIEILFQEGFLK--VLFATETFSIGLNMPAKTVVFTSVRKWDGQQFRWVSGGEYIQMSGRAGRRGL 486 (1010)
T ss_dssp EESTTSCHHHHHHHHHHHHTTCCS--EEEEEGGGGGSTTCCBSEEEESCSEEECSSCEEECCHHHHHHHHTTBCCTTT
T ss_pred EECCCCCHHHHHHHHHHHhcCCCc--EEEEehHhhccCCCCCceEEEeCCcccCCcCCccCCHHHHhHhhhhcccCCC
Confidence 899999999999999999988654 7888999999999999999999 998 8999999999999999997
No 52
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=99.68 E-value=2.3e-16 Score=123.83 Aligned_cols=107 Identities=15% Similarity=0.083 Sum_probs=87.4
Q ss_pred HHHHHHhhhCCCeEEEEeccHHHHHHHHHHHhhcC------------------------------------CeEEEEeCC
Q psy2046 29 DEILPDLKKNGHRVLIFSQFIFVLDILGHYMDIRG------------------------------------WRHLRLDGA 72 (138)
Q Consensus 29 ~~ll~~~~~~~~k~iif~~~~~~~~~l~~~l~~~g------------------------------------~~~~~i~g~ 72 (138)
.+.+.+....+.++|||++....++.++..|.... ..+..+||+
T Consensus 242 ~~~~~~~~~~~~~~LVF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~~~v~~~h~~ 321 (715)
T 2va8_A 242 IAYTLDSLSKNGQVLVFRNSRKMAESTALKIANYMNFVSLDENALSEILKQLDDIEEGGSDEKELLKSLISKGVAYHHAG 321 (715)
T ss_dssp HHHHHHHHTTTCCEEEECSSHHHHHHHHHHHHHTTTSSCCCHHHHHHHHHHHHTCCSSCHHHHHHHHHHHTTTEEEECTT
T ss_pred HHHHHHHHhcCCCEEEEECCHHHHHHHHHHHHHHHhhccCChHHHHHHHHHHHHhhhccccccHHHHHHHhcCEEEECCC
Confidence 44444445567899999999999999988887542 247899999
Q ss_pred CChHHHHHHHHHHhcCCCceEEEEeccccccccCcCccCEEEE----eC-------CCCCccchhHHHHHHhhcCC
Q psy2046 73 TQVSSRQELIDEYNRDQDLFAFLLSTKAGGLGINLTAADTVII----HD-------VDFNPYNDKQAEDRCHRVGQ 137 (138)
Q Consensus 73 ~~~~~R~~~~~~F~~~~~~~vll~~~~~~~~Gl~l~~~~~vi~----~~-------~~~~~~~~~Q~~gR~~R~GQ 137 (138)
++.++|..+.+.|+++... +|++|++++.|+|+++.++||. || .|++...+.|++||+||.|+
T Consensus 322 l~~~~r~~v~~~f~~g~~~--vlvaT~~l~~Gidip~~~~VI~~~~~~d~~~~~~~~~~s~~~~~Qr~GRaGR~g~ 395 (715)
T 2va8_A 322 LSKALRDLIEEGFRQRKIK--VIVATPTLAAGVNLPARTVIIGDIYRFNKKIAGYYDEIPIMEYKQMSGRAGRPGF 395 (715)
T ss_dssp SCHHHHHHHHHHHHTTCSC--EEEECGGGGGSSCCCBSEEEECCC--------------CHHHHHHHHTTBCCTTT
T ss_pred CCHHHHHHHHHHHHcCCCe--EEEEChHHhcccCCCceEEEEeCCeeccccCCCCCCcCCHHHHHHHhhhcCCCCC
Confidence 9999999999999988543 7888999999999999999998 88 78899999999999999985
No 53
>1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A*
Probab=99.68 E-value=2.2e-17 Score=123.41 Aligned_cols=94 Identities=15% Similarity=0.168 Sum_probs=77.6
Q ss_pred hhCCCeEEEEeccHHHHHHHHHHHhhcCCeEEEEeCCCChHHHHHHHHHHhcCCCceEEEEeccccccccCcCccCEEEE
Q psy2046 36 KKNGHRVLIFSQFIFVLDILGHYMDIRGWRHLRLDGATQVSSRQELIDEYNRDQDLFAFLLSTKAGGLGINLTAADTVII 115 (138)
Q Consensus 36 ~~~~~k~iif~~~~~~~~~l~~~l~~~g~~~~~i~g~~~~~~R~~~~~~F~~~~~~~vll~~~~~~~~Gl~l~~~~~vi~ 115 (138)
.+.+.+++||+++...++.+.+.|+..|+++..+|| ++|.+++++|++++.. +|++|+++++|+|++ +++||+
T Consensus 174 ~~~~~~~lVF~~s~~~a~~l~~~L~~~~~~v~~lhg----~~R~~~~~~F~~g~~~--vLVaT~v~e~GiDip-v~~VI~ 246 (440)
T 1yks_A 174 LADKRPTAWFLPSIRAANVMAASLRKAGKSVVVLNR----KTFEREYPTIKQKKPD--FILATDIAEMGANLC-VERVLD 246 (440)
T ss_dssp HHCCSCEEEECSCHHHHHHHHHHHHHTTCCEEECCS----SSCC--------CCCS--EEEESSSTTCCTTCC-CSEEEE
T ss_pred HhcCCCEEEEeCCHHHHHHHHHHHHHcCCCEEEecc----hhHHHHHhhhcCCCce--EEEECChhheeeccC-ceEEEe
Confidence 345779999999999999999999999999999999 4688999999988654 788999999999999 999985
Q ss_pred -------------------eCCCCCccchhHHHHHHhhcC
Q psy2046 116 -------------------HDVDFNPYNDKQAEDRCHRVG 136 (138)
Q Consensus 116 -------------------~~~~~~~~~~~Q~~gR~~R~G 136 (138)
++.|.++..|.|++||++|.|
T Consensus 247 ~g~~~~pv~~~~~~~~vi~~~~p~~~~~~~Qr~GR~GR~g 286 (440)
T 1yks_A 247 CRTAFKPVLVDEGRKVAIKGPLRISASSAAQRRGRIGRNP 286 (440)
T ss_dssp CCEEEEEEEETTTTEEEEEEEEECCHHHHHHHHTTSSCCT
T ss_pred CCccceeeecccccceeeccccccCHHHHHHhccccCCCC
Confidence 888999999999999999984
No 54
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=99.67 E-value=1.9e-17 Score=130.86 Aligned_cols=116 Identities=17% Similarity=0.243 Sum_probs=96.0
Q ss_pred cCchHHHHHHHHHHhhhCCCeEEEEeccHH--------HHHHHHHHHhh---cCCeEEEEeCCCChHHHHHHHHHHhcCC
Q psy2046 21 ESGKLKKLDEILPDLKKNGHRVLIFSQFIF--------VLDILGHYMDI---RGWRHLRLDGATQVSSRQELIDEYNRDQ 89 (138)
Q Consensus 21 ~s~K~~~l~~ll~~~~~~~~k~iif~~~~~--------~~~~l~~~l~~---~g~~~~~i~g~~~~~~R~~~~~~F~~~~ 89 (138)
...+...+.+.+......+.+++|||+..+ .++.+.+.|.. .++.+..+||++++.+|.+++++|++++
T Consensus 560 ~~~~~~~l~~~i~~~l~~g~qvlVf~~~ie~se~l~~~~a~~l~~~L~~~~~~~~~v~~lHG~m~~~eR~~v~~~F~~G~ 639 (780)
T 1gm5_A 560 PMDRVNEVYEFVRQEVMRGGQAFIVYPLIEESDKLNVKSAVEMYEYLSKEVFPEFKLGLMHGRLSQEEKDRVMLEFAEGR 639 (780)
T ss_dssp CSSTHHHHHHHHHHHTTTSCCBCCBCCCC--------CHHHHHHHSGGGSCC---CBCCCCSSSCCSCSHHHHHHHTTTS
T ss_pred ccchHHHHHHHHHHHHhcCCcEEEEecchhhhhhhhHHHHHHHHHHHHhhhcCCCcEEEEeCCCCHHHHHHHHHHHHCCC
Confidence 345666777777766677889999998653 36778888877 4778999999999999999999999886
Q ss_pred CceEEEEeccccccccCcCccCEEEEeCCC-CCccchhHHHHHHhhcCCC
Q psy2046 90 DLFAFLLSTKAGGLGINLTAADTVIIHDVD-FNPYNDKQAEDRCHRVGQT 138 (138)
Q Consensus 90 ~~~vll~~~~~~~~Gl~l~~~~~vi~~~~~-~~~~~~~Q~~gR~~R~GQt 138 (138)
.. +|++|+++++|+|++++++||+++++ |+...+.|++||++|.|++
T Consensus 640 ~~--ILVaT~vie~GIDiP~v~~VIi~d~~r~~l~~l~Qr~GRaGR~g~~ 687 (780)
T 1gm5_A 640 YD--ILVSTTVIEVGIDVPRANVMVIENPERFGLAQLHQLRGRVGRGGQE 687 (780)
T ss_dssp SS--BCCCSSCCCSCSCCTTCCEEEBCSCSSSCTTHHHHHHHTSCCSSTT
T ss_pred Ce--EEEECCCCCccccCCCCCEEEEeCCCCCCHHHHHHHhcccCcCCCC
Confidence 54 78899999999999999999999998 4788899999999999863
No 55
>3rc3_A ATP-dependent RNA helicase SUPV3L1, mitochondrial; SUV3, nucleus, hydrolase; HET: ANP; 2.08A {Homo sapiens} PDB: 3rc8_A
Probab=99.67 E-value=2.7e-16 Score=122.75 Aligned_cols=97 Identities=19% Similarity=0.238 Sum_probs=86.8
Q ss_pred CeEEEEeccHHHHHHHHHHHhhcCCeEEEEeCCCChHHHHHHHHHHhcCCCceEEEEeccccccccCcCccCEEEEeCC-
Q psy2046 40 HRVLIFSQFIFVLDILGHYMDIRGWRHLRLDGATQVSSRQELIDEYNRDQDLFAFLLSTKAGGLGINLTAADTVIIHDV- 118 (138)
Q Consensus 40 ~k~iif~~~~~~~~~l~~~l~~~g~~~~~i~g~~~~~~R~~~~~~F~~~~~~~vll~~~~~~~~Gl~l~~~~~vi~~~~- 118 (138)
...+||+.+...++.+...|...++.+..+||++++.+|.++++.|++++...-+|++|+++++|+|+ .+++||+++.
T Consensus 321 ~g~iIf~~s~~~ie~la~~L~~~g~~v~~lHG~L~~~~R~~~~~~F~~~~g~~~VLVATdi~e~GlDi-~v~~VI~~~~~ 399 (677)
T 3rc3_A 321 PGDCIVCFSKNDIYSVSRQIEIRGLESAVIYGSLPPGTKLAQAKKFNDPNDPCKILVATDAIGMGLNL-SIRRIIFYSLI 399 (677)
T ss_dssp TTEEEECSSHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHHHCTTSSCCEEEECGGGGSSCCC-CBSEEEESCSB
T ss_pred CCCEEEEcCHHHHHHHHHHHHhcCCCeeeeeccCCHHHHHHHHHHHHccCCCeEEEEeCcHHHCCcCc-CccEEEECCcc
Confidence 34588899999999999999999999999999999999999999999832222378899999999999 9999999998
Q ss_pred -------------CCCccchhHHHHHHhhcCC
Q psy2046 119 -------------DFNPYNDKQAEDRCHRVGQ 137 (138)
Q Consensus 119 -------------~~~~~~~~Q~~gR~~R~GQ 137 (138)
|++...+.||+||++|.|+
T Consensus 400 k~~~~~~G~~~~~p~s~~~~~QR~GRAGR~g~ 431 (677)
T 3rc3_A 400 KPSINEKGERELEPITTSQALQIAGRAGRFSS 431 (677)
T ss_dssp C-----------CBCCHHHHHHHHTTBTCTTS
T ss_pred ccccccCCccccccCCHHHHHHHhcCCCCCCC
Confidence 7889999999999999995
No 56
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae}
Probab=99.66 E-value=2.3e-16 Score=128.74 Aligned_cols=111 Identities=15% Similarity=0.071 Sum_probs=91.1
Q ss_pred HHHHHHHHHHhhhC-CCeEEEEeccHHHHHHHHHHHhhcCCe--------------------------------------
Q psy2046 25 LKKLDEILPDLKKN-GHRVLIFSQFIFVLDILGHYMDIRGWR-------------------------------------- 65 (138)
Q Consensus 25 ~~~l~~ll~~~~~~-~~k~iif~~~~~~~~~l~~~l~~~g~~-------------------------------------- 65 (138)
...+..++..+... +.++|||+++...++.+...|...++.
T Consensus 426 ~~~l~~li~~l~~~~~~~vIVF~~sr~~~e~la~~L~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~ 505 (1108)
T 3l9o_A 426 KGDIYKIVKMIWKKKYNPVIVFSFSKRDCEELALKMSKLDFNSDDEKEALTKIFNNAIALLPETDRELPQIKHILPLLRR 505 (1108)
T ss_dssp HHHHHHHHHHHHHTTCCCEEEEESCHHHHHHHHHHTCSHHHHCC----CHHHHGGGSCTHHHHHTTCCHHHHHHTHHHHH
T ss_pred hhHHHHHHHHHHhcCCCCEEEEeCcHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHhhcchhhhhhhhHHHHHHhhhc
Confidence 34455566555444 469999999999999999998764333
Q ss_pred -EEEEeCCCChHHHHHHHHHHhcCCCceEEEEeccccccccCcCccCEEEEeCCCCCccc--------hhHHHHHHhhcC
Q psy2046 66 -HLRLDGATQVSSRQELIDEYNRDQDLFAFLLSTKAGGLGINLTAADTVIIHDVDFNPYN--------DKQAEDRCHRVG 136 (138)
Q Consensus 66 -~~~i~g~~~~~~R~~~~~~F~~~~~~~vll~~~~~~~~Gl~l~~~~~vi~~~~~~~~~~--------~~Q~~gR~~R~G 136 (138)
+..+||++++.+|..+++.|+++... +|++|+++++|+|++.+++||.++.+|+... |.|++||++|.|
T Consensus 506 gV~~~Hg~l~~~~R~~v~~~F~~G~ik--VLVAT~vla~GIDiP~v~~VI~~~~~~d~~~~r~iS~~eyiQr~GRAGR~G 583 (1108)
T 3l9o_A 506 GIGIHHSGLLPILKEVIEILFQEGFLK--VLFATETFSIGLNMPAKTVVFTSVRKWDGQQFRWVSGGEYIQMSGRAGRRG 583 (1108)
T ss_dssp TEEEECSCSCHHHHHHHHHHHHHTCCC--EEEEESCCCSCCCC--CEEEESCSEEESSSCEEECCHHHHHHHHHHSCCSS
T ss_pred CeeeecCCCCHHHHHHHHHHHhCCCCe--EEEECcHHhcCCCCCCceEEEecCcccCccccccCCHHHHHHhhcccCCCC
Confidence 68899999999999999999988654 7888999999999999999999888887765 999999999999
Q ss_pred C
Q psy2046 137 Q 137 (138)
Q Consensus 137 Q 137 (138)
+
T Consensus 584 ~ 584 (1108)
T 3l9o_A 584 L 584 (1108)
T ss_dssp S
T ss_pred C
Confidence 4
No 57
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A
Probab=99.66 E-value=2.6e-16 Score=123.44 Aligned_cols=106 Identities=17% Similarity=0.147 Sum_probs=89.1
Q ss_pred HHHHHhhhCCCeEEEEeccHHHHHHHHHHHhhc------------------------------CCeEEEEeCCCChHHHH
Q psy2046 30 EILPDLKKNGHRVLIFSQFIFVLDILGHYMDIR------------------------------GWRHLRLDGATQVSSRQ 79 (138)
Q Consensus 30 ~ll~~~~~~~~k~iif~~~~~~~~~l~~~l~~~------------------------------g~~~~~i~g~~~~~~R~ 79 (138)
+++.+....+.++|||+++...++.++..|... +..+..+||++++++|.
T Consensus 233 ~~~~~~~~~~~~~LVF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~v~~~h~~l~~~~R~ 312 (702)
T 2p6r_A 233 ELVEECVAENGGVLVFESTRRGAEKTAVKLSAITAKYVENEGLEKAILEENEGEMSRKLAECVRKGAAFHHAGLLNGQRR 312 (702)
T ss_dssp HHHHHHHHTTCCEEEECSSHHHHHHHHHHHHHHHHTTCCCSSHHHHHHTTCCSHHHHHHHHHHHTTCCEECTTSCHHHHH
T ss_pred HHHHHHHhcCCCEEEEcCCHHHHHHHHHHHHHHHHhhcChHHHHHHHHhhccccccHHHHHHHhcCeEEecCCCCHHHHH
Confidence 334444456789999999999999888887643 13467899999999999
Q ss_pred HHHHHHhcCCCceEEEEeccccccccCcCccCEEEE----eC---CCCCccchhHHHHHHhhcCC
Q psy2046 80 ELIDEYNRDQDLFAFLLSTKAGGLGINLTAADTVII----HD---VDFNPYNDKQAEDRCHRVGQ 137 (138)
Q Consensus 80 ~~~~~F~~~~~~~vll~~~~~~~~Gl~l~~~~~vi~----~~---~~~~~~~~~Q~~gR~~R~GQ 137 (138)
.+.+.|+++... +|++|++++.|+|+++.+.||. || .|++...+.|++||+||.|+
T Consensus 313 ~v~~~f~~g~~~--vlvaT~~l~~Gidip~~~~VI~~~~~yd~~~~~~s~~~~~Qr~GRaGR~g~ 375 (702)
T 2p6r_A 313 VVEDAFRRGNIK--VVVATPTLAAGVNLPARRVIVRSLYRFDGYSKRIKVSEYKQMAGRAGRPGM 375 (702)
T ss_dssp HHHHHHHTTSCC--EEEECSTTTSSSCCCBSEEEECCSEEESSSEEECCHHHHHHHHTTBSCTTT
T ss_pred HHHHHHHCCCCe--EEEECcHHhccCCCCceEEEEcCceeeCCCCCcCCHHHHHHHhhhcCCCCC
Confidence 999999988543 7889999999999999999988 66 67899999999999999985
No 58
>2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A
Probab=99.65 E-value=3.3e-16 Score=117.42 Aligned_cols=94 Identities=18% Similarity=0.168 Sum_probs=84.7
Q ss_pred hCCCeEEEEeccHHHHHHHHHHHhhcCCeEEEEeCCCChHHHHHHHHHHhcCCCceEEEEeccccccccCcCccCEEEEe
Q psy2046 37 KNGHRVLIFSQFIFVLDILGHYMDIRGWRHLRLDGATQVSSRQELIDEYNRDQDLFAFLLSTKAGGLGINLTAADTVIIH 116 (138)
Q Consensus 37 ~~~~k~iif~~~~~~~~~l~~~l~~~g~~~~~i~g~~~~~~R~~~~~~F~~~~~~~vll~~~~~~~~Gl~l~~~~~vi~~ 116 (138)
+.+.++|||+++...++.+...|...|+++..+||++ +.++++.|++++.. +|++|+++++|+|+++ ++||++
T Consensus 186 ~~~~~~lVF~~s~~~a~~l~~~L~~~g~~~~~lh~~~----~~~~~~~f~~g~~~--vLVaT~v~~~GiDip~-~~VI~~ 258 (451)
T 2jlq_A 186 DYQGKTVWFVPSIKAGNDIANCLRKSGKRVIQLSRKT----FDTEYPKTKLTDWD--FVVTTDISEMGANFRA-GRVIDP 258 (451)
T ss_dssp HCCSCEEEECSSHHHHHHHHHHHHTTTCCEEEECTTT----HHHHGGGGGSSCCS--EEEECGGGGSSCCCCC-SEEEEC
T ss_pred hCCCCEEEEcCCHHHHHHHHHHHHHcCCeEEECCHHH----HHHHHHhhccCCce--EEEECCHHHhCcCCCC-CEEEEC
Confidence 3466999999999999999999999999999999965 46799999988654 7889999999999999 999998
Q ss_pred C--------------------CCCCccchhHHHHHHhhcCC
Q psy2046 117 D--------------------VDFNPYNDKQAEDRCHRVGQ 137 (138)
Q Consensus 117 ~--------------------~~~~~~~~~Q~~gR~~R~GQ 137 (138)
+ +|.+...|.||+||++|.|.
T Consensus 259 ~~~~~~~~d~~~~~~l~~~~~~p~s~~~y~Qr~GRaGR~g~ 299 (451)
T 2jlq_A 259 RRCLKPVILTDGPERVILAGPIPVTPASAAQRRGRIGRNPA 299 (451)
T ss_dssp CEEEEEEEECSSSCEEEEEEEEECCHHHHHHHHTTSSCCTT
T ss_pred CCcccccccccccceeeecccccCCHHHHHHhccccCCCCC
Confidence 8 88899999999999999985
No 59
>2wv9_A Flavivirin protease NS2B regulatory subunit, FLAV protease NS3 catalytic subunit; nucleotide-binding, capsid protein; 2.75A {Murray valley encephalitis virus}
Probab=99.65 E-value=1.8e-16 Score=123.71 Aligned_cols=95 Identities=17% Similarity=0.196 Sum_probs=85.3
Q ss_pred hhCCCeEEEEeccHHHHHHHHHHHhhcCCeEEEEeCCCChHHHHHHHHHHhcCCCceEEEEeccccccccCcCccCEEEE
Q psy2046 36 KKNGHRVLIFSQFIFVLDILGHYMDIRGWRHLRLDGATQVSSRQELIDEYNRDQDLFAFLLSTKAGGLGINLTAADTVII 115 (138)
Q Consensus 36 ~~~~~k~iif~~~~~~~~~l~~~l~~~g~~~~~i~g~~~~~~R~~~~~~F~~~~~~~vll~~~~~~~~Gl~l~~~~~vi~ 115 (138)
.+.+.++|||++....++.+.+.|+..++++..+|| ++|.+++++|++++.. +|++|+++++|+|++ +++||+
T Consensus 407 ~~~~~~~lVF~~s~~~~e~la~~L~~~g~~v~~lHg----~eR~~v~~~F~~g~~~--VLVaTdv~e~GIDip-v~~VI~ 479 (673)
T 2wv9_A 407 TDYAGKTVWFVASVKMSNEIAQCLQRAGKRVIQLNR----KSYDTEYPKCKNGDWD--FVITTDISEMGANFG-ASRVID 479 (673)
T ss_dssp HSCCSCEEEECSSHHHHHHHHHHHHTTTCCEEEECS----SSHHHHGGGGGTCCCS--EEEECGGGGTTCCCC-CSEEEE
T ss_pred HhCCCCEEEEECCHHHHHHHHHHHHhCCCeEEEeCh----HHHHHHHHHHHCCCce--EEEECchhhcceeeC-CcEEEE
Confidence 346789999999999999999999999999999999 3799999999988654 788999999999999 999997
Q ss_pred --------------------eCCCCCccchhHHHHHHhhc-CC
Q psy2046 116 --------------------HDVDFNPYNDKQAEDRCHRV-GQ 137 (138)
Q Consensus 116 --------------------~~~~~~~~~~~Q~~gR~~R~-GQ 137 (138)
+++|.++..|.|++||++|. |+
T Consensus 480 ~g~~~~p~vi~da~~r~~ll~d~P~s~~~y~Qr~GRaGR~~g~ 522 (673)
T 2wv9_A 480 CRKSVKPTILDEGEGRVILSVPSAITSASAAQRRGRVGRNPSQ 522 (673)
T ss_dssp CCEECCEEEECSTTCEEEECCSEECCHHHHHHHHTTSSCCSSC
T ss_pred CCCcccceeeecccccceecccCCCCHHHHHHHhhccCCCCCC
Confidence 56788889999999999998 54
No 60
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=99.64 E-value=4.1e-16 Score=122.59 Aligned_cols=105 Identities=13% Similarity=0.051 Sum_probs=88.6
Q ss_pred HHHHhhhCCCeEEEEeccHHHHHHHHHHHhhc------------------C---------------CeEEEEeCCCChHH
Q psy2046 31 ILPDLKKNGHRVLIFSQFIFVLDILGHYMDIR------------------G---------------WRHLRLDGATQVSS 77 (138)
Q Consensus 31 ll~~~~~~~~k~iif~~~~~~~~~l~~~l~~~------------------g---------------~~~~~i~g~~~~~~ 77 (138)
++.+....+.++|||+++...++.++..|.+. + ..+..+||++++++
T Consensus 229 ~~~~~~~~~~~~LVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~~~~~~v~~~h~~l~~~~ 308 (720)
T 2zj8_A 229 LVYDAIRKKKGALIFVNMRRKAERVALELSKKVKSLLTKPEIRALNELADSLEENPTNEKLAKAIRGGVAFHHAGLGRDE 308 (720)
T ss_dssp HHHHHHHTTCCEEEECSCHHHHHHHHHHHHHHHGGGSCHHHHHHHHHHHHTSCSCHHHHHHHHHHTTTEEEECTTSCHHH
T ss_pred HHHHHHhCCCCEEEEecCHHHHHHHHHHHHHHHHHhcChhhHHHHHHHHHHHhcccchHHHHHHHhcCeeeecCCCCHHH
Confidence 33333456789999999999999888888653 1 24889999999999
Q ss_pred HHHHHHHHhcCCCceEEEEeccccccccCcCccCEEEE----eC----CCCCccchhHHHHHHhhcCC
Q psy2046 78 RQELIDEYNRDQDLFAFLLSTKAGGLGINLTAADTVII----HD----VDFNPYNDKQAEDRCHRVGQ 137 (138)
Q Consensus 78 R~~~~~~F~~~~~~~vll~~~~~~~~Gl~l~~~~~vi~----~~----~~~~~~~~~Q~~gR~~R~GQ 137 (138)
|..+.+.|+++... +|++|++++.|+|+++.+.||. || .|++...+.|++||+||.|+
T Consensus 309 R~~v~~~f~~g~~~--vlvaT~~l~~Gvdip~~~~VI~~~~~yd~~g~~~~s~~~~~Qr~GRaGR~g~ 374 (720)
T 2zj8_A 309 RVLVEENFRKGIIK--AVVATPTLSAGINTPAFRVIIRDIWRYSDFGMERIPIIEVHQMLGRAGRPKY 374 (720)
T ss_dssp HHHHHHHHHTTSSC--EEEECSTTGGGCCCCBSEEEECCSEECCSSSCEECCHHHHHHHHTTBCCTTT
T ss_pred HHHHHHHHHCCCCe--EEEECcHhhccCCCCceEEEEcCCeeecCCCCccCCHHHHHHHHhhcCCCCC
Confidence 99999999988543 7788999999999999999988 66 57889999999999999985
No 61
>2whx_A Serine protease/ntpase/helicase NS3; transcription, hydrolase, ATP-binding, reticulum, nucleotidyltransferase, multifunctional enzyme; HET: ADP; 2.20A {Dengue virus 4} PDB: 2vbc_A 2wzq_A
Probab=99.63 E-value=3.3e-16 Score=121.38 Aligned_cols=95 Identities=16% Similarity=0.167 Sum_probs=84.8
Q ss_pred hhCCCeEEEEeccHHHHHHHHHHHhhcCCeEEEEeCCCChHHHHHHHHHHhcCCCceEEEEeccccccccCcCccCEE--
Q psy2046 36 KKNGHRVLIFSQFIFVLDILGHYMDIRGWRHLRLDGATQVSSRQELIDEYNRDQDLFAFLLSTKAGGLGINLTAADTV-- 113 (138)
Q Consensus 36 ~~~~~k~iif~~~~~~~~~l~~~l~~~g~~~~~i~g~~~~~~R~~~~~~F~~~~~~~vll~~~~~~~~Gl~l~~~~~v-- 113 (138)
.+.+.++|||+++...++.+.+.|...|+++..+||+ +|.+++++|++++.. +|++|+++++|+|++ +++|
T Consensus 352 ~~~~~~~LVF~~s~~~a~~l~~~L~~~g~~v~~lhg~----~R~~~l~~F~~g~~~--VLVaTdv~~rGiDi~-v~~VId 424 (618)
T 2whx_A 352 TDYQGKTVWFVPSIKAGNDIANCLRKSGKRVIQLSRK----TFDTEYPKTKLTDWD--FVVTTDISEMGANFR-AGRVID 424 (618)
T ss_dssp HHCCSCEEEECSSHHHHHHHHHHHHHTTCCEEEECTT----THHHHTTHHHHSCCS--EEEECGGGGTTCCCC-CSEEEE
T ss_pred HhCCCCEEEEECChhHHHHHHHHHHHcCCcEEEEChH----HHHHHHHhhcCCCcE--EEEECcHHHcCcccC-ceEEEE
Confidence 3457799999999999999999999999999999983 788899999988654 788999999999997 8888
Q ss_pred ------------------EEeCCCCCccchhHHHHHHhhcCC
Q psy2046 114 ------------------IIHDVDFNPYNDKQAEDRCHRVGQ 137 (138)
Q Consensus 114 ------------------i~~~~~~~~~~~~Q~~gR~~R~GQ 137 (138)
|++++|.+...|.||+||++|.|.
T Consensus 425 ~g~~~~P~~~~~~~~~~~i~~d~P~s~~~yiQR~GRaGR~g~ 466 (618)
T 2whx_A 425 PRRCLKPVILTDGPERVILAGPIPVTPASAAQRRGRIGRNPA 466 (618)
T ss_dssp CCEEEEEEEECSSSCEEEEEEEEECCHHHHHHHHTTSSCCTT
T ss_pred CcceecceecccCCCceEEcccccCCHHHHHHhccccCCCCC
Confidence 777778889999999999999974
No 62
>2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane, nucleotide-binding, RNA replication, transmembrane, viral protein; 1.80A {Japanese encephalitis virus} PDB: 2v8o_A 2qeq_A
Probab=99.63 E-value=1.2e-16 Score=120.13 Aligned_cols=93 Identities=15% Similarity=0.168 Sum_probs=81.6
Q ss_pred CCCeEEEEeccHHHHHHHHHHHhhcCCeEEEEeCCCChHHHHHHHHHHhcCCCceEEEEeccccccccCcCccCEEEE--
Q psy2046 38 NGHRVLIFSQFIFVLDILGHYMDIRGWRHLRLDGATQVSSRQELIDEYNRDQDLFAFLLSTKAGGLGINLTAADTVII-- 115 (138)
Q Consensus 38 ~~~k~iif~~~~~~~~~l~~~l~~~g~~~~~i~g~~~~~~R~~~~~~F~~~~~~~vll~~~~~~~~Gl~l~~~~~vi~-- 115 (138)
.+.++|||+++...++.+...|+..|+++..+||. +|.+++++|++++.. +|++|+++++|+|+++ ++||+
T Consensus 189 ~~~~~LVF~~s~~~~~~l~~~L~~~g~~v~~lh~~----~R~~~~~~f~~g~~~--iLVaT~v~~~GiDip~-~~VI~~G 261 (459)
T 2z83_A 189 YAGKTVWFVASVKMGNEIAMCLQRAGKKVIQLNRK----SYDTEYPKCKNGDWD--FVITTDISEMGANFGA-SRVIDCR 261 (459)
T ss_dssp CCSCEEEECSCHHHHHHHHHHHHHTTCCEEEESTT----CCCCCGGGSSSCCCS--EEEESSCC---CCCSC-SEEEECC
T ss_pred cCCCEEEEeCChHHHHHHHHHHHhcCCcEEecCHH----HHHHHHhhccCCCce--EEEECChHHhCeecCC-CEEEECC
Confidence 46799999999999999999999999999999994 677899999988654 7889999999999999 99998
Q ss_pred ------------------eCCCCCccchhHHHHHHhhcCC
Q psy2046 116 ------------------HDVDFNPYNDKQAEDRCHRVGQ 137 (138)
Q Consensus 116 ------------------~~~~~~~~~~~Q~~gR~~R~GQ 137 (138)
+++|.++..|.||+||++|.|.
T Consensus 262 ~~~~~~~~~~~~~~~~~~~d~p~s~~~~~QR~GRaGR~g~ 301 (459)
T 2z83_A 262 KSVKPTILEEGEGRVILGNPSPITSASAAQRRGRVGRNPN 301 (459)
T ss_dssp EECCEEEECSSSCEEEECSCEECCHHHHHHHHTTSSCCTT
T ss_pred cccccccccccccccccccCCCCCHHHHHHhccccCCCCC
Confidence 7799999999999999999984
No 63
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=99.62 E-value=5.6e-16 Score=115.58 Aligned_cols=94 Identities=18% Similarity=0.220 Sum_probs=83.6
Q ss_pred hCCCeEEEEeccHHHHHHHHHHHhhcCCeEEEEeCCCChHHHHHHHHHHhcCCCceEEEEeccccccccCcCccCE----
Q psy2046 37 KNGHRVLIFSQFIFVLDILGHYMDIRGWRHLRLDGATQVSSRQELIDEYNRDQDLFAFLLSTKAGGLGINLTAADT---- 112 (138)
Q Consensus 37 ~~~~k~iif~~~~~~~~~l~~~l~~~g~~~~~i~g~~~~~~R~~~~~~F~~~~~~~vll~~~~~~~~Gl~l~~~~~---- 112 (138)
+.+.+++||++....++.+.+.|+..++++..+||+ +|.+++++|++++.. +|++|+++++|+|++ +.+
T Consensus 169 ~~~~~~lVF~~~~~~~~~l~~~L~~~~~~v~~lhg~----~r~~~~~~f~~g~~~--vLVaT~v~e~GiDip-~~~VI~~ 241 (431)
T 2v6i_A 169 EFDGRTVWFVHSIKQGAEIGTCLQKAGKKVLYLNRK----TFESEYPKCKSEKWD--FVITTDISEMGANFK-ADRVIDP 241 (431)
T ss_dssp SCSSCEEEECSSHHHHHHHHHHHHHTTCCEEEESTT----THHHHTTHHHHSCCS--EEEECGGGGTSCCCC-CSEEEEC
T ss_pred cCCCCEEEEeCCHHHHHHHHHHHHHcCCeEEEeCCc----cHHHHHHhhcCCCCe--EEEECchHHcCcccC-CcEEEec
Confidence 346689999999999999999999999999999996 688899999988654 788999999999999 555
Q ss_pred -------------EEEeCCCCCccchhHHHHHHhhcCC
Q psy2046 113 -------------VIIHDVDFNPYNDKQAEDRCHRVGQ 137 (138)
Q Consensus 113 -------------vi~~~~~~~~~~~~Q~~gR~~R~GQ 137 (138)
+|+++.|.+...|.|++||++|.|.
T Consensus 242 g~~~~~v~d~~~~vi~~~~p~~~~~~~Qr~GR~GR~g~ 279 (431)
T 2v6i_A 242 RKTIKPILLDGRVSMQGPIAITPASAAQRRGRIGRNPE 279 (431)
T ss_dssp CEEEEEEEETTEEEEEEEEECCHHHHHHHHTTSSCCTT
T ss_pred CccccceecccceeecccccCCHHHHHHhhhccCCCCC
Confidence 5677889999999999999999984
No 64
>4a4z_A Antiviral helicase SKI2; hydrolase, ATPase, mRNA degradation, exosome; HET: ANP; 2.40A {Saccharomyces cerevisiae} PDB: 4a4k_A
Probab=99.59 E-value=5.8e-15 Score=119.52 Aligned_cols=110 Identities=15% Similarity=0.135 Sum_probs=90.7
Q ss_pred chHHHHHHHHHHhhhCCCeEEEEeccHHHHHHHHHHHhhcCC--------------------------------------
Q psy2046 23 GKLKKLDEILPDLKKNGHRVLIFSQFIFVLDILGHYMDIRGW-------------------------------------- 64 (138)
Q Consensus 23 ~K~~~l~~ll~~~~~~~~k~iif~~~~~~~~~l~~~l~~~g~-------------------------------------- 64 (138)
.++..+.+.+.. ....++|||+.+...++.+...|...++
T Consensus 322 ~~~~~li~~l~~--~~~~~~IVF~~sr~~~e~la~~L~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~ 399 (997)
T 4a4z_A 322 KTWPEIVNYLRK--RELLPMVVFVFSKKRCEEYADWLEGINFCNNKEKSQIHMFIEKSITRLKKEDRDLPQILKTRSLLE 399 (997)
T ss_dssp THHHHHHHHHHH--TTCCSEEEECSCHHHHHHHHHTTTTCCCCCHHHHHHHHHHHHHHHTTSCHHHHTCHHHHHHHHHHT
T ss_pred hHHHHHHHHHHh--CCCCCEEEEECCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHhcchhhhcchhHHHHHHHhh
Confidence 445556555542 2456999999999999999999977665
Q ss_pred -eEEEEeCCCChHHHHHHHHHHhcCCCceEEEEeccccccccCcCccCEEEEeCCCC---------CccchhHHHHHHhh
Q psy2046 65 -RHLRLDGATQVSSRQELIDEYNRDQDLFAFLLSTKAGGLGINLTAADTVIIHDVDF---------NPYNDKQAEDRCHR 134 (138)
Q Consensus 65 -~~~~i~g~~~~~~R~~~~~~F~~~~~~~vll~~~~~~~~Gl~l~~~~~vi~~~~~~---------~~~~~~Q~~gR~~R 134 (138)
.+..+||++++.+|..+++.|+.+... +|++|+++++|+|+++ ..||+++.+. ++..|.|++||++|
T Consensus 400 ~gi~~~H~gl~~~~R~~v~~~F~~G~~k--VLvAT~~~a~GIDiP~-~~VVi~~~~k~dg~~~~~~s~~~y~Qr~GRAGR 476 (997)
T 4a4z_A 400 RGIAVHHGGLLPIVKELIEILFSKGFIK--VLFATETFAMGLNLPT-RTVIFSSIRKHDGNGLRELTPGEFTQMAGRAGR 476 (997)
T ss_dssp TTEEEECTTSCHHHHHHHHHHHHTTCCS--EEEECTHHHHSCCCCC-SEEEESCSEEEETTEEEECCHHHHHHHHGGGCC
T ss_pred cCeeeecCCCCHHHHHHHHHHHHCCCCc--EEEEchHhhCCCCCCC-ceEEEeccccccCccCCCCCHHHHhHHhccccc
Confidence 468999999999999999999988654 7889999999999999 6666655544 88999999999999
Q ss_pred cCC
Q psy2046 135 VGQ 137 (138)
Q Consensus 135 ~GQ 137 (138)
.|+
T Consensus 477 ~G~ 479 (997)
T 4a4z_A 477 RGL 479 (997)
T ss_dssp TTT
T ss_pred CCC
Confidence 984
No 65
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=99.58 E-value=1.9e-15 Score=119.63 Aligned_cols=111 Identities=12% Similarity=0.100 Sum_probs=91.8
Q ss_pred chHHHHHHHHHHhh--hCCCeEEEEeccHHHHHHHHHHHhh-----------cCCeEEEEeCCCChHHHHHHHHHHh---
Q psy2046 23 GKLKKLDEILPDLK--KNGHRVLIFSQFIFVLDILGHYMDI-----------RGWRHLRLDGATQVSSRQELIDEYN--- 86 (138)
Q Consensus 23 ~K~~~l~~ll~~~~--~~~~k~iif~~~~~~~~~l~~~l~~-----------~g~~~~~i~g~~~~~~R~~~~~~F~--- 86 (138)
.+...+...+.++. ..+.++|||++....++.+...|.. .++.+..+||++++.+|.++++.|.
T Consensus 285 ~~~~~~l~~l~~~~~~~~~g~iLVF~~~~~~i~~l~~~L~~~~~~l~~~~~~~~~~v~~lhg~l~~~eR~~v~~~f~~~~ 364 (773)
T 2xau_A 285 DYLDSAIRTVLQIHATEEAGDILLFLTGEDEIEDAVRKISLEGDQLVREEGCGPLSVYPLYGSLPPHQQQRIFEPAPESH 364 (773)
T ss_dssp CHHHHHHHHHHHHHHHSCSCEEEEECSCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECTTCCHHHHGGGGSCCCCCS
T ss_pred hHHHHHHHHHHHHHHhcCCCCEEEECCCHHHHHHHHHHHHHHHHhhcccccCCCeEEEEeCCCCCHHHHHHHHhhccccc
Confidence 34444444444332 2467999999999999999999875 5788999999999999999999998
Q ss_pred --cCCCceEEEEeccccccccCcCccCEEEEeCC------------------CCCccchhHHHHHHhhc
Q psy2046 87 --RDQDLFAFLLSTKAGGLGINLTAADTVIIHDV------------------DFNPYNDKQAEDRCHRV 135 (138)
Q Consensus 87 --~~~~~~vll~~~~~~~~Gl~l~~~~~vi~~~~------------------~~~~~~~~Q~~gR~~R~ 135 (138)
++. .-+|++|+++++|+|++++++||.++. |.+...|.||.||+||.
T Consensus 365 ~~~g~--~kVlVAT~iae~GidIp~v~~VId~g~~k~~~yd~~~g~~~L~~~p~S~~s~~QR~GRaGR~ 431 (773)
T 2xau_A 365 NGRPG--RKVVISTNIAETSLTIDGIVYVVDPGFSKQKVYNPRIRVESLLVSPISKASAQQRAGRAGRT 431 (773)
T ss_dssp SSSCC--EEEEEECTHHHHTCCCTTEEEEEECSEEEEEEEETTTTEEEEEEEECCHHHHHHHHHGGGSS
T ss_pred CCCCc--eEEEEeCcHHHhCcCcCCeEEEEeCCCccceeeccccCccccccccCCHHHHHhhccccCCC
Confidence 553 337889999999999999999999766 77889999999999996
No 66
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A
Probab=99.57 E-value=3.4e-15 Score=121.89 Aligned_cols=87 Identities=17% Similarity=0.116 Sum_probs=76.0
Q ss_pred chHHHHHHHHHHhhhCCCeEEEEeccHHHHHHHHHHHhhcCCeEE-EEeCCCChHHHHHHHHHHhcCCCceEEEEe----
Q psy2046 23 GKLKKLDEILPDLKKNGHRVLIFSQFIFVLDILGHYMDIRGWRHL-RLDGATQVSSRQELIDEYNRDQDLFAFLLS---- 97 (138)
Q Consensus 23 ~K~~~l~~ll~~~~~~~~k~iif~~~~~~~~~l~~~l~~~g~~~~-~i~g~~~~~~R~~~~~~F~~~~~~~vll~~---- 97 (138)
.|...+.+++.. .+.++|||+++...++.+...|...|+++. .+|| +|.+ +++|++++.. +|++
T Consensus 296 ~k~~~L~~ll~~---~~~~~LVF~~s~~~a~~l~~~L~~~g~~~~~~lhg-----~rr~-l~~F~~G~~~--VLVatas~ 364 (1104)
T 4ddu_A 296 RSKEKLVELLEI---FRDGILIFAQTEEEGKELYEYLKRFKFNVGETWSE-----FEKN-FEDFKVGKIN--ILIGVQAY 364 (1104)
T ss_dssp CCHHHHHHHHHH---HCSSEEEEESSSHHHHHHHHHHHHTTCCEEESSSS-----HHHH-HHHHHHTSCS--EEEEETTT
T ss_pred CHHHHHHHHHHh---cCCCEEEEECcHHHHHHHHHHHHhCCCCeeeEecC-----cHHH-HHHHHCCCCC--EEEEecCC
Confidence 578888888876 347999999999999999999999999998 9998 2555 9999998654 5666
Q ss_pred ccccccccCcCc-cCEEEEeCCCC
Q psy2046 98 TKAGGLGINLTA-ADTVIIHDVDF 120 (138)
Q Consensus 98 ~~~~~~Gl~l~~-~~~vi~~~~~~ 120 (138)
|+++++|+|+++ +++||++|+|-
T Consensus 365 TdvlarGIDip~~V~~VI~~d~P~ 388 (1104)
T 4ddu_A 365 YGKLTRGVDLPERIKYVIFWGTPS 388 (1104)
T ss_dssp HHHHCCSCCCTTTCCEEEEESCCE
T ss_pred CCeeEecCcCCCCCCEEEEECCCC
Confidence 999999999999 99999999997
No 67
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B*
Probab=99.55 E-value=4.1e-15 Score=121.05 Aligned_cols=87 Identities=11% Similarity=0.120 Sum_probs=69.0
Q ss_pred CchHHHHHHHHHHhhhCCCeEEEEeccHHHHHHHHHHHhhcCCeEEEEeCCCChHHHHHHHHHHhcCCCceEEEEe----
Q psy2046 22 SGKLKKLDEILPDLKKNGHRVLIFSQFIFVLDILGHYMDIRGWRHLRLDGATQVSSRQELIDEYNRDQDLFAFLLS---- 97 (138)
Q Consensus 22 s~K~~~l~~ll~~~~~~~~k~iif~~~~~~~~~l~~~l~~~g~~~~~i~g~~~~~~R~~~~~~F~~~~~~~vll~~---- 97 (138)
..|...+.+++... +.++|||+++...++.+...|+.. +++..+||++ .+++++|++++. . +|++
T Consensus 261 ~~k~~~L~~ll~~~---~~~~LVF~~t~~~a~~l~~~L~~~-~~v~~lhg~~-----~~~l~~F~~G~~-~-VLVaTas~ 329 (1054)
T 1gku_B 261 DESISTLSSILEKL---GTGGIIYARTGEEAEEIYESLKNK-FRIGIVTATK-----KGDYEKFVEGEI-D-HLIGTAHY 329 (1054)
T ss_dssp CCCTTTTHHHHTTS---CSCEEEEESSHHHHHHHHHTTTTS-SCEEECTTSS-----SHHHHHHHHTSC-S-EEEEECC-
T ss_pred hhHHHHHHHHHhhc---CCCEEEEEcCHHHHHHHHHHHhhc-cCeeEEeccH-----HHHHHHHHcCCC-c-EEEEecCC
Confidence 45667777777543 678999999999999999999988 9999999987 378899998865 4 4555
Q ss_pred ccccccccCcCcc-CEEEEeCCC
Q psy2046 98 TKAGGLGINLTAA-DTVIIHDVD 119 (138)
Q Consensus 98 ~~~~~~Gl~l~~~-~~vi~~~~~ 119 (138)
|+++++|+|++++ ++||++++|
T Consensus 330 Tdv~~rGIDip~VI~~VI~~~~P 352 (1054)
T 1gku_B 330 YGTLVRGLDLPERIRFAVFVGCP 352 (1054)
T ss_dssp -----CCSCCTTTCCEEEEESCC
T ss_pred CCeeEeccccCCcccEEEEeCCC
Confidence 8999999999995 999999999
No 68
>3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA compl protease/ntpase/helicase, hydrolase; 1.95A {Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4b71_A* 4b73_A* 4b74_A* 4b76_A* 4b75_A* 4a92_A* 1cu1_A 4b6e_A* 4b6f_A* 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A* 3kqh_A 3kqk_A ...
Probab=99.53 E-value=8.9e-15 Score=113.71 Aligned_cols=89 Identities=25% Similarity=0.186 Sum_probs=77.4
Q ss_pred CCCeEEEEeccHHHHHHHHHHHhhcCCeEEEEeCCCChHHHHHHHHHHhcCCCceEEEEeccccccccCcCccCEEE---
Q psy2046 38 NGHRVLIFSQFIFVLDILGHYMDIRGWRHLRLDGATQVSSRQELIDEYNRDQDLFAFLLSTKAGGLGINLTAADTVI--- 114 (138)
Q Consensus 38 ~~~k~iif~~~~~~~~~l~~~l~~~g~~~~~i~g~~~~~~R~~~~~~F~~~~~~~vll~~~~~~~~Gl~l~~~~~vi--- 114 (138)
++.++|||++.++.++.+.+.|++.|+++..+||++++.+ |+.+.. -+|++|+++++|+|++ ++.||
T Consensus 395 ~~~~vLVFv~Tr~~ae~la~~L~~~g~~v~~lHG~l~q~e-------r~~~~~--~VLVATdVaerGIDId-V~~VI~~G 464 (666)
T 3o8b_A 395 RGGRHLIFCHSKKKCDELAAKLSGLGINAVAYYRGLDVSV-------IPTIGD--VVVVATDALMTGYTGD-FDSVIDCN 464 (666)
T ss_dssp SSSEEEEECSCHHHHHHHHHHHHTTTCCEEEECTTSCGGG-------SCSSSC--EEEEECTTHHHHCCCC-BSEEEECC
T ss_pred cCCcEEEEeCCHHHHHHHHHHHHhCCCcEEEecCCCCHHH-------HHhCCC--cEEEECChHHccCCCC-CcEEEecC
Confidence 4679999999999999999999999999999999999875 344433 4888999999999986 99888
Q ss_pred -------EeC-----------CCCCccchhHHHHHHhhcCC
Q psy2046 115 -------IHD-----------VDFNPYNDKQAEDRCHRVGQ 137 (138)
Q Consensus 115 -------~~~-----------~~~~~~~~~Q~~gR~~R~GQ 137 (138)
+|| .|.+...|.||+||++| |.
T Consensus 465 l~~~~ViNyDydP~~gl~~~~~P~s~~syiQRiGRtGR-g~ 504 (666)
T 3o8b_A 465 TCVTQTVDFSLDPTFTIETTTVPQDAVSRSQRRGRTGR-GR 504 (666)
T ss_dssp EEEEEEEECCCSSSCEEEEEEEECBHHHHHHHHTTBCS-SS
T ss_pred cccccccccccccccccccccCcCCHHHHHHHhccCCC-CC
Confidence 566 77788999999999999 75
No 69
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=99.17 E-value=4.4e-11 Score=101.25 Aligned_cols=97 Identities=16% Similarity=0.104 Sum_probs=76.6
Q ss_pred CCeEEEEeccHHHHHHHHHHHhhc-------------------------------------CCeEEEEeCCCChHHHHHH
Q psy2046 39 GHRVLIFSQFIFVLDILGHYMDIR-------------------------------------GWRHLRLDGATQVSSRQEL 81 (138)
Q Consensus 39 ~~k~iif~~~~~~~~~l~~~l~~~-------------------------------------g~~~~~i~g~~~~~~R~~~ 81 (138)
+.++|||++++..++.++..|.+. ...++..||++++++|..+
T Consensus 317 ~~~~LVF~~sR~~~~~~A~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~Gva~HHagL~~~~R~~v 396 (1724)
T 4f92_B 317 KNQVLVFVHSRKETGKTARAIRDMCLEKDTLGLFLREGSASTEVLRTEAEQCKNLELKDLLPYGFAIHHAGMTRVDRTLV 396 (1724)
T ss_dssp SCCEEEECSSTTTTHHHHHHHHHHHHHTTSTTCCSSCCTTCSSHHHHTTSCCSTHHHHHHTTTTEEEECSSSCTHHHHHH
T ss_pred CCcEEEECCCHHHHHHHHHHHHHHHhhccchhhhcccchhHHHHHHhhhcccccHHHHHHhhcCEEEEcCCCCHHHHHHH
Confidence 468999999987766655555321 1237789999999999999
Q ss_pred HHHHhcCCCceEEEEeccccccccCcCccCEEEE----eCCC------CCccchhHHHHHHhhcCC
Q psy2046 82 IDEYNRDQDLFAFLLSTKAGGLGINLTAADTVII----HDVD------FNPYNDKQAEDRCHRVGQ 137 (138)
Q Consensus 82 ~~~F~~~~~~~vll~~~~~~~~Gl~l~~~~~vi~----~~~~------~~~~~~~Q~~gR~~R~GQ 137 (138)
.+.|++|... +|++|.+++.|+|+|....||. |++. .++.+|.|++||+||.|.
T Consensus 397 E~~F~~G~i~--vlvaTsTLa~GVNlPa~~vVI~~~~~~~~~~~~~~~ls~~~~~Qm~GRAGR~g~ 460 (1724)
T 4f92_B 397 EDLFADKHIQ--VLVSTATLAWGVNLPAHTVIIKGTQVYSPEKGRWTELGALDILQMLGRAGRPQY 460 (1724)
T ss_dssp HHHHHTTCCC--EEEECHHHHHHSCCCBSEEEEECCEEEETTTTEEEECCHHHHHHHHTTBSCTTT
T ss_pred HHHHHCCCCe--EEEEcchhHhhCCCCCceEEEeCCEEecCcCCCcccCCHHHHHHhhhhccCCCC
Confidence 9999988644 7889999999999997776663 4443 467789999999999984
No 70
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=99.16 E-value=9.2e-11 Score=99.33 Aligned_cols=99 Identities=13% Similarity=0.059 Sum_probs=76.5
Q ss_pred hCCCeEEEEeccHHHHHHHHHHHhhc----------------------------------CCeEEEEeCCCChHHHHHHH
Q psy2046 37 KNGHRVLIFSQFIFVLDILGHYMDIR----------------------------------GWRHLRLDGATQVSSRQELI 82 (138)
Q Consensus 37 ~~~~k~iif~~~~~~~~~l~~~l~~~----------------------------------g~~~~~i~g~~~~~~R~~~~ 82 (138)
..+.++|||++++..++.++..|... ...+..+||++++.+|..+.
T Consensus 1153 ~~~~~~lVF~~sR~~~~~~A~~L~~~~~~~~~~~~~~~~~~~~l~~~l~~~~d~~L~~~l~~GIa~hHagL~~~~R~~VE 1232 (1724)
T 4f92_B 1153 SPKKPVIVFVPSRKQTRLTAIDILTTCAADIQRQRFLHCTEKDLIPYLEKLSDSTLKETLLNGVGYLHEGLSPMERRLVE 1232 (1724)
T ss_dssp CSSSCEEEEESSHHHHHHHHHHHHHHHHHTTCTTTTBCSCHHHHHHHHTTCCCHHHHHHHHTTEEEECTTSCHHHHHHHH
T ss_pred cCCCCeeeeCCCHHHHHHHHHHHHHHHhhccchhhhhcccHHHHHHHHhhcccHHHHHHHhCCEEEECCCCCHHHHHHHH
Confidence 44678999999998776655444210 22477899999999999999
Q ss_pred HHHhcCCCceEEEEeccccccccCcCccCEEEE----eCC------CCCccchhHHHHHHhhcCC
Q psy2046 83 DEYNRDQDLFAFLLSTKAGGLGINLTAADTVII----HDV------DFNPYNDKQAEDRCHRVGQ 137 (138)
Q Consensus 83 ~~F~~~~~~~vll~~~~~~~~Gl~l~~~~~vi~----~~~------~~~~~~~~Q~~gR~~R~GQ 137 (138)
+.|++|... +|++|.+++.|+|++....||. |+. +.++.+|.|++||+||.|.
T Consensus 1233 ~lF~~G~i~--VLvaT~tlA~GVnlPa~~VVI~~~~~~dg~~~~~~~~s~~~~~Qm~GRAGR~g~ 1295 (1724)
T 4f92_B 1233 QLFSSGAIQ--VVVASRSLCWGMNVAAHLVIIMDTQYYNGKIHAYVDYPIYDVLQMVGHANRPLQ 1295 (1724)
T ss_dssp HHHHHTSBC--EEEEEGGGSSSCCCCBSEEEEECSEEEETTTTEEEECCHHHHHHHHTTBCCTTT
T ss_pred HHHHCCCCe--EEEEChHHHcCCCCCccEEEEecCccccCcccccCCCCHHHHHHhhccccCCCC
Confidence 999998643 7778999999999996655552 221 3567789999999999986
No 71
>2w00_A HSDR, R.ECOR124I; ATP-binding, DNA-binding, restriction system, helicase, HYDR R.ECOR124I, nucleotide-binding; HET: ATP; 2.6A {Escherichia coli} PDB: 2y3t_A* 2w74_B*
Probab=99.14 E-value=4.1e-10 Score=91.63 Aligned_cols=96 Identities=11% Similarity=0.020 Sum_probs=77.3
Q ss_pred CCeEEEEeccHHHHHHHHHHHhhcC------------CeE-EEEeCC----------C----------Ch----------
Q psy2046 39 GHRVLIFSQFIFVLDILGHYMDIRG------------WRH-LRLDGA----------T----------QV---------- 75 (138)
Q Consensus 39 ~~k~iif~~~~~~~~~l~~~l~~~g------------~~~-~~i~g~----------~----------~~---------- 75 (138)
+.+.+|||.++..+..+...|.+.+ +++ +.++|+ + ++
T Consensus 537 g~kamVf~~S~~~A~~~~~~l~~~~~~~~~~~~~~~~~k~avv~s~~~~~~~~~~G~~~~e~~~~~~~~~~~r~~l~~~I 616 (1038)
T 2w00_A 537 GFNAMLAVSSVDAAKAYYATFKRLQEEAANKSATYKPLRIATIFSFAANEEQNAIGEISDETFDTSAMDSSAKEFLDAAI 616 (1038)
T ss_dssp CCEEEEEESSHHHHHHHHHHHHHHHHHHTTTSSSCCCCCEEEECCCCC------CCCCCCCCSCGGGSCHHHHHHHHHHH
T ss_pred CCcEEEEECCHHHHHHHHHHHHhhhhhhcccccccccCcEEEEEeCCCccccccccccccccccccccchhHHHHHHHHH
Confidence 4589999999999999999997754 455 445543 1 11
Q ss_pred -------------------HHHHHHHHHHhcCCCceEEEEeccccccccCcCccCEEEEeCCCCCccchhHHHHHHhhcC
Q psy2046 76 -------------------SSRQELIDEYNRDQDLFAFLLSTKAGGLGINLTAADTVIIHDVDFNPYNDKQAEDRCHRVG 136 (138)
Q Consensus 76 -------------------~~R~~~~~~F~~~~~~~vll~~~~~~~~Gl~l~~~~~vi~~~~~~~~~~~~Q~~gR~~R~G 136 (138)
.+|..++++|++++.. +|++++.+.+|+|.|.. +++++|.|.+...+.|++||+.|.+
T Consensus 617 ~dyn~~f~~~~~~~~~~~~~~R~~i~~~Fk~g~i~--ILIvvd~lltGfDiP~l-~tlylDkpl~~~~liQaIGRtnR~~ 693 (1038)
T 2w00_A 617 REYNSHFKTNFSTDSNGFQNYYRDLAQRVKNQDID--LLIVVGMFLTGFDAPTL-NTLFVDKNLRYHGLMQAFSRTNRIY 693 (1038)
T ss_dssp HHHHHHHTCCCCSSHHHHHHHHHHHHHHHHTTSSS--EEEESSTTSSSCCCTTE-EEEEEESCCCHHHHHHHHHTTCCCC
T ss_pred HHHHHHhcccccccchhhhHHHHHHHHHHHcCCCe--EEEEcchHHhCcCcccc-cEEEEccCCCccceeehhhccCcCC
Confidence 1478899999987643 67778999999999999 7788899999999999999999987
Q ss_pred C
Q psy2046 137 Q 137 (138)
Q Consensus 137 Q 137 (138)
.
T Consensus 694 ~ 694 (1038)
T 2w00_A 694 D 694 (1038)
T ss_dssp C
T ss_pred C
Confidence 3
No 72
>2vl7_A XPD; helicase, unknown function; 2.25A {Sulfolobus tokodaii}
Probab=98.41 E-value=1.6e-06 Score=66.29 Aligned_cols=91 Identities=8% Similarity=0.161 Sum_probs=56.3
Q ss_pred HHHHHHHHHhhh-CCCeEEEEeccHHHHHHHHHHHhhcCCeEEEEeCCCChHHHHHHHHHHhcCCCceEEE-Eecccccc
Q psy2046 26 KKLDEILPDLKK-NGHRVLIFSQFIFVLDILGHYMDIRGWRHLRLDGATQVSSRQELIDEYNRDQDLFAFL-LSTKAGGL 103 (138)
Q Consensus 26 ~~l~~ll~~~~~-~~~k~iif~~~~~~~~~l~~~l~~~g~~~~~i~g~~~~~~R~~~~~~F~~~~~~~vll-~~~~~~~~ 103 (138)
..+.+.+..+.. .+.+++||.++...++.+.+.+.. ++ +.+.|.. .+|.+++++|+.++. +++ +.+....+
T Consensus 370 ~~~~~~l~~~~~~~~g~~lvff~S~~~~~~v~~~l~~--~~-~~~q~~~--~~~~~~l~~f~~~~~--il~~V~~~~~~E 442 (540)
T 2vl7_A 370 PIYSILLKRIYENSSKSVLVFFPSYEMLESVRIHLSG--IP-VIEENKK--TRHEEVLELMKTGKY--LVMLVMRAKESE 442 (540)
T ss_dssp HHHHHHHHHHHHTCSSEEEEEESCHHHHHHHHTTCTT--SC-EEESTTT--CCHHHHHHHHHTSCC--EEEEEC------
T ss_pred HHHHHHHHHHHHhCCCCEEEEeCCHHHHHHHHHHhcc--Cc-eEecCCC--CcHHHHHHHHhcCCe--EEEEEecCceec
Confidence 455566655543 356899999999999999988865 33 4556654 478999999987532 333 37799999
Q ss_pred ccCcCc----cCEEEEeCCCCCcc
Q psy2046 104 GINLTA----ADTVIIHDVDFNPY 123 (138)
Q Consensus 104 Gl~l~~----~~~vi~~~~~~~~~ 123 (138)
|+|+++ +..||++..|+-+.
T Consensus 443 GiD~~~~~~~~~~Vii~~lPf~~~ 466 (540)
T 2vl7_A 443 GVEFREKENLFESLVLAGLPYPNV 466 (540)
T ss_dssp ---------CEEEEEEESCCCCCT
T ss_pred ceecCCCcccccEEEEECCCCCCC
Confidence 999997 78899999887443
No 73
>2ipc_A Preprotein translocase SECA subunit; nucleotide binding fold, ATPase, parallel dimer; 2.80A {Thermus thermophilus}
Probab=98.20 E-value=5.6e-06 Score=66.45 Aligned_cols=114 Identities=19% Similarity=0.269 Sum_probs=89.7
Q ss_pred ccCchHHHHHHHHHHhhhCCCeEEEEeccHHHHHHHHHHHh---------------------------------------
Q psy2046 20 VESGKLKKLDEILPDLKKNGHRVLIFSQFIFVLDILGHYMD--------------------------------------- 60 (138)
Q Consensus 20 ~~s~K~~~l~~ll~~~~~~~~k~iif~~~~~~~~~l~~~l~--------------------------------------- 60 (138)
....|+.++.+-+.+..+.|..|||++.+++..+.|+..|+
T Consensus 424 t~~~K~~AIv~eI~~~~~~GqPVLVgT~SIe~SE~LS~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 503 (997)
T 2ipc_A 424 TEKGKFYAVVEEIAEKYERGQPVLVGTISIEKSERLSQMLKEPRLYLPRLEMRLELFKKASQKQQGPEWERLRKLLERPA 503 (997)
T ss_dssp SHHHHHHHHHHHHHHHHHHTCCEEEECSSHHHHHHHHHHHHCGGGGHHHHHHHHHHHHHHHTTCCSHHHHHHHHHTSSST
T ss_pred CHHHHHHHHHHHHHHHHHCCCCEEEEeCCHHHHHHHHHHHhhccccchhhhhhhhhhhhhhhhccccchhhhhhhhhccc
Confidence 34578888888888888889999999999999999999998
Q ss_pred -------------------------------------hcCCeEEEEeCCCChHHHHHHHHHHhcCCCceEEEEecccccc
Q psy2046 61 -------------------------------------IRGWRHLRLDGATQVSSRQELIDEYNRDQDLFAFLLSTKAGGL 103 (138)
Q Consensus 61 -------------------------------------~~g~~~~~i~g~~~~~~R~~~~~~F~~~~~~~vll~~~~~~~~ 103 (138)
+.|+++-+++......+ .+++.+ .|... .+-++|..+|+
T Consensus 504 ~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gI~H~VLNAK~he~E-AeIIAq--AG~~G-aVTIATNMAGR 579 (997)
T 2ipc_A 504 QLKDEDLAPFEGLIPPKGNLRTAWEGLKRAVHTLAVLRQGIPHQVLNAKHHARE-AEIVAQ--AGRSK-TVTIATNMAGR 579 (997)
T ss_dssp TCSHHHHSGGGGGCCSSHHHHHHHHHHHHHHHHHHHHHHCCCCCEECSSSHHHH-HHHHHT--TTSTT-CEEEECSSTTT
T ss_pred cccccccccccccccccccccccccccchhhhhhHHHHcCCCeeeccccchHHH-HHHHHh--cCCCC-eEEEEecccCC
Confidence 67899888887643222 345553 34333 37778999999
Q ss_pred ccCcCcc-------------------C-----------------------------------------------------
Q psy2046 104 GINLTAA-------------------D----------------------------------------------------- 111 (138)
Q Consensus 104 Gl~l~~~-------------------~----------------------------------------------------- 111 (138)
|-|+.-. +
T Consensus 580 GTDIkLggn~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~V~e~G 659 (997)
T 2ipc_A 580 GTDIKLGGNPEYLAAALLEKEGFDRYEWKVELFIKKMVAGKEEEARALAQELGIREELLERIREIREECKQDEERVRALG 659 (997)
T ss_dssp TSCCCSSCCHHHHHHHTTSSSCSSTTHHHHHHHHHHHHHTCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred CcCeecCCCHHHHHHHHHHhhcccccccccccccccccccchhhccccchhhhhhhhHHHHHHHhhhhhhhhhhHHHhcC
Confidence 9997632 1
Q ss_pred --EEEEeCCCCCccchhHHHHHHhhcCC
Q psy2046 112 --TVIIHDVDFNPYNDKQAEDRCHRVGQ 137 (138)
Q Consensus 112 --~vi~~~~~~~~~~~~Q~~gR~~R~GQ 137 (138)
|||-.+.+-+.....|-.||++|.|.
T Consensus 660 GLhVIGTeRhESrRIDnQLRGRaGRQGD 687 (997)
T 2ipc_A 660 GLFIIGTERHESRRIDNQLRGRAGRQGD 687 (997)
T ss_dssp CCCEEESSCCSSHHHHHHHHHTSSCSSC
T ss_pred CeEEEeccCCchHHHHHHHhcccccCCC
Confidence 78888888888889999999999996
No 74
>4a15_A XPD helicase, ATP-dependent DNA helicase TA0057; hydrolase, nucleotide excision repair,; 2.20A {Thermoplasma acidophilum} PDB: 2vsf_A*
Probab=97.68 E-value=0.00022 Score=55.45 Aligned_cols=90 Identities=8% Similarity=0.141 Sum_probs=54.6
Q ss_pred HHHHHHHHHhhh-CCCeEEEEeccHHHHHHHHHHHhhcCCeEEEEeCCCChHHHHHHHHHHhcCCCceEEEEec--cccc
Q psy2046 26 KKLDEILPDLKK-NGHRVLIFSQFIFVLDILGHYMDIRGWRHLRLDGATQVSSRQELIDEYNRDQDLFAFLLST--KAGG 102 (138)
Q Consensus 26 ~~l~~ll~~~~~-~~~k~iif~~~~~~~~~l~~~l~~~g~~~~~i~g~~~~~~R~~~~~~F~~~~~~~vll~~~--~~~~ 102 (138)
..+.+.|..+.+ .+..++||..+-..++.+.+.++ .+..- ..-+++..+|..++++|+ ++. . +|+++ ...+
T Consensus 434 ~~~~~~i~~l~~~~~g~~lvlF~Sy~~l~~v~~~l~--~~~~~-~~q~~~~~~~~~ll~~f~-~~~-~-vL~~v~~gsf~ 507 (620)
T 4a15_A 434 DRMATVIEDIILKVKKNTIVYFPSYSLMDRVENRVS--FEHMK-EYRGIDQKELYSMLKKFR-RDH-G-TIFAVSGGRLS 507 (620)
T ss_dssp HHHHHHHHHHHHHHCSCEEEEESCHHHHHHHTSSCC--SCCEE-CCTTCCSHHHHHHHHHHT-TSC-C-EEEEETTSCC-
T ss_pred HHHHHHHHHHHHhCCCCEEEEeCCHHHHHHHHHHHH--hcchh-ccCCCChhHHHHHHHHhc-cCC-c-EEEEEecCcee
Confidence 445555555432 35578888888888888888886 23322 333444568999999999 433 3 44554 5889
Q ss_pred cccCcC--ccCEEEEeCCCCC
Q psy2046 103 LGINLT--AADTVIIHDVDFN 121 (138)
Q Consensus 103 ~Gl~l~--~~~~vi~~~~~~~ 121 (138)
+|+|++ ....||+...|+-
T Consensus 508 EGiD~~g~~l~~viI~~lPfp 528 (620)
T 4a15_A 508 EGINFPGNELEMIILAGLPFP 528 (620)
T ss_dssp -------CCCCEEEESSCCCC
T ss_pred ccccCCCCceEEEEEEcCCCC
Confidence 999998 5678899887763
No 75
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=96.53 E-value=0.026 Score=45.12 Aligned_cols=99 Identities=15% Similarity=0.043 Sum_probs=72.3
Q ss_pred ccCchHHHHHHHHHHhhhCCCeEEEEeccHHHHHHHHHHHh----hcCCeEEEEeCCCChHHHHHHHHHHhcCCCceEEE
Q psy2046 20 VESGKLKKLDEILPDLKKNGHRVLIFSQFIFVLDILGHYMD----IRGWRHLRLDGATQVSSRQELIDEYNRDQDLFAFL 95 (138)
Q Consensus 20 ~~s~K~~~l~~ll~~~~~~~~k~iif~~~~~~~~~l~~~l~----~~g~~~~~i~g~~~~~~R~~~~~~F~~~~~~~vll 95 (138)
.-|+|.....-.+.....++.++++.+++..-+....+.+. ..|+++..++|+++..+|.+.++...+++ ..+++
T Consensus 398 TGSGKTlvall~il~~l~~g~qvlvlaPtr~La~Q~~~~l~~~~~~~gi~v~~l~G~~~~~~r~~~~~~l~~g~-~~IvV 476 (780)
T 1gm5_A 398 VGSGKTVVAQLAILDNYEAGFQTAFMVPTSILAIQHYRRTVESFSKFNIHVALLIGATTPSEKEKIKSGLRNGQ-IDVVI 476 (780)
T ss_dssp SSSSHHHHHHHHHHHHHHHTSCEEEECSCHHHHHHHHHHHHHHHTCSSCCEEECCSSSCHHHHHHHHHHHHSSC-CCEEE
T ss_pred CCCCHHHHHHHHHHHHHHcCCeEEEEeCcHHHHHHHHHHHHHHhhhcCceEEEEeCCCCHHHHHHHHHHHhcCC-CCEEE
Confidence 34788776665554445567899999999876655554444 44899999999999999999999998764 45677
Q ss_pred EeccccccccCcCccCEEEEeCCC
Q psy2046 96 LSTKAGGLGINLTAADTVIIHDVD 119 (138)
Q Consensus 96 ~~~~~~~~Gl~l~~~~~vi~~~~~ 119 (138)
.+.......+.+.+...||+=+.+
T Consensus 477 gT~~ll~~~~~~~~l~lVVIDEaH 500 (780)
T 1gm5_A 477 GTHALIQEDVHFKNLGLVIIDEQH 500 (780)
T ss_dssp ECTTHHHHCCCCSCCCEEEEESCC
T ss_pred ECHHHHhhhhhccCCceEEecccc
Confidence 776666666777788777775443
No 76
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=96.06 E-value=0.074 Score=38.75 Aligned_cols=96 Identities=9% Similarity=0.081 Sum_probs=69.5
Q ss_pred cccCchHHHHHHHHHHhhhCCCeEEEEeccHHHHHHHHHHHhh---cCCeEEEEeCCCChHHHHHHHHHHhcCCCceEEE
Q psy2046 19 VVESGKLKKLDEILPDLKKNGHRVLIFSQFIFVLDILGHYMDI---RGWRHLRLDGATQVSSRQELIDEYNRDQDLFAFL 95 (138)
Q Consensus 19 ~~~s~K~~~l~~ll~~~~~~~~k~iif~~~~~~~~~l~~~l~~---~g~~~~~i~g~~~~~~R~~~~~~F~~~~~~~vll 95 (138)
..-++|.....-.+......+.+++|.+++..-+..+.+.++. .++++..++|+.+..++...++.+..++ ..+++
T Consensus 44 pTGsGKT~~~l~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~l~~~~-~~Iiv 122 (414)
T 3oiy_A 44 PTGVGKTTFGMMTALWLARKGKKSALVFPTVTLVKQTLERLQKLADEKVKIFGFYSSMKKEEKEKFEKSFEEDD-YHILV 122 (414)
T ss_dssp CSSSSHHHHHHHHHHHHHTTTCCEEEEESSHHHHHHHHHHHHHHCCSSCCEEECCTTSCHHHHHHHHHHHHHTC-CSEEE
T ss_pred CCCCCHHHHHHHHHHHHhcCCCEEEEEECCHHHHHHHHHHHHHHccCCceEEEEECCCChhhHHHHHHHhhcCC-CCEEE
Confidence 3456887755444444446678999999999988888888877 5889999999999988888888887763 35677
Q ss_pred Eeccccccc---cCcCccCEEEE
Q psy2046 96 LSTKAGGLG---INLTAADTVII 115 (138)
Q Consensus 96 ~~~~~~~~G---l~l~~~~~vi~ 115 (138)
+++.....- +++...+.+|+
T Consensus 123 ~Tp~~l~~~l~~~~~~~~~~iVi 145 (414)
T 3oiy_A 123 FSTQFVSKNREKLSQKRFDFVFV 145 (414)
T ss_dssp EEHHHHHHCHHHHTTCCCSEEEE
T ss_pred ECHHHHHHHHHHhccccccEEEE
Confidence 777665322 34456666666
No 77
>3crv_A XPD/RAD3 related DNA helicase; XPD helicase DNA repair cancer aging, hydrolase; HET: FLC; 2.00A {Sulfolobus acidocaldarius} PDB: 3crw_1*
Probab=95.51 E-value=0.28 Score=37.45 Aligned_cols=88 Identities=15% Similarity=0.164 Sum_probs=56.6
Q ss_pred HHHHHHHHHHhhh-CCCeEEEEeccHHHHHHHHHHHhhcCCeEEEEeCCCChHHHHHHHHHHhcCCCceEEEEec--ccc
Q psy2046 25 LKKLDEILPDLKK-NGHRVLIFSQFIFVLDILGHYMDIRGWRHLRLDGATQVSSRQELIDEYNRDQDLFAFLLST--KAG 101 (138)
Q Consensus 25 ~~~l~~ll~~~~~-~~~k~iif~~~~~~~~~l~~~l~~~g~~~~~i~g~~~~~~R~~~~~~F~~~~~~~vll~~~--~~~ 101 (138)
...+.+.+..+.. .+..++||..+-..++.+.+. .+.+ +.+.+... .+.+.++.|+..+. . +|+++ ...
T Consensus 378 ~~~l~~~i~~l~~~~~g~~lvlF~Sy~~l~~v~~~---~~~~-v~~q~~~~--~~~~~~~~~~~~~~-~-vl~~v~gg~~ 449 (551)
T 3crv_A 378 WKRYADYLLKIYFQAKANVLVVFPSYEIMDRVMSR---ISLP-KYVESEDS--SVEDLYSAISANNK-V-LIGSVGKGKL 449 (551)
T ss_dssp HHHHHHHHHHHHHHCSSEEEEEESCHHHHHHHHTT---CCSS-EEECCSSC--CHHHHHHHTTSSSS-C-EEEEESSCCS
T ss_pred HHHHHHHHHHHHHhCCCCEEEEecCHHHHHHHHHh---cCCc-EEEcCCCC--CHHHHHHHHHhcCC-e-EEEEEeccee
Confidence 4556666665543 355888888888887777763 3333 34444321 25668888863333 2 45554 688
Q ss_pred ccccCcC-----ccCEEEEeCCCC
Q psy2046 102 GLGINLT-----AADTVIIHDVDF 120 (138)
Q Consensus 102 ~~Gl~l~-----~~~~vi~~~~~~ 120 (138)
.+|+|++ .+..||+...|+
T Consensus 450 ~EGiD~~d~~g~~l~~viI~~lPf 473 (551)
T 3crv_A 450 AEGIELRNNDRSLISDVVIVGIPY 473 (551)
T ss_dssp CCSSCCEETTEESEEEEEEESCCC
T ss_pred cccccccccCCcceeEEEEEcCCC
Confidence 9999999 367888887776
No 78
>2l82_A Designed protein OR32; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, de novo protein; NMR {Artificial gene}
Probab=95.40 E-value=0.14 Score=30.77 Aligned_cols=46 Identities=20% Similarity=0.289 Sum_probs=36.2
Q ss_pred EEEEeccHHHHHHHHHHHhhcCCeEEEEeCCCChHHHHHHHHHHhc
Q psy2046 42 VLIFSQFIFVLDILGHYMDIRGWRHLRLDGATQVSSRQELIDEYNR 87 (138)
Q Consensus 42 ~iif~~~~~~~~~l~~~l~~~g~~~~~i~g~~~~~~R~~~~~~F~~ 87 (138)
.++|++-++.+..+...+++.|..++.+++......|.+.++.|..
T Consensus 5 fvvfssdpeilkeivreikrqgvrvvllysdqdekrrrerleefek 50 (162)
T 2l82_A 5 FVVFSSDPEILKEIVREIKRQGVRVVLLYSDQDEKRRRERLEEFEK 50 (162)
T ss_dssp EEEEESCHHHHHHHHHHHHHTTCEEEEEECCSCHHHHHHHHHHHHT
T ss_pred EEEecCCHHHHHHHHHHHHhCCeEEEEEecCchHHHHHHHHHHHHH
Confidence 5778888888888888888888888888888877777777777764
No 79
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A
Probab=95.27 E-value=0.16 Score=42.17 Aligned_cols=96 Identities=9% Similarity=0.089 Sum_probs=71.7
Q ss_pred ccCchHHHHHHHHHHhhhCCCeEEEEeccHHHHHHHHHHHhh---cCCeEEEEeCCCChHHHHHHHHHHhcCCCceEEEE
Q psy2046 20 VESGKLKKLDEILPDLKKNGHRVLIFSQFIFVLDILGHYMDI---RGWRHLRLDGATQVSSRQELIDEYNRDQDLFAFLL 96 (138)
Q Consensus 20 ~~s~K~~~l~~ll~~~~~~~~k~iif~~~~~~~~~l~~~l~~---~g~~~~~i~g~~~~~~R~~~~~~F~~~~~~~vll~ 96 (138)
.-++|.....-.+......+.+++|.++...-+..+.+.++. .++.+..++|+.+..+|.+.++.+..+. ..++++
T Consensus 102 TGSGKTl~~l~~il~~~~~~~~~Lil~PtreLa~Q~~~~l~~l~~~~i~v~~l~Gg~~~~er~~~~~~l~~g~-~~IlV~ 180 (1104)
T 4ddu_A 102 TGVGKTTFGMMTALWLARKGKKSALVFPTVTLVKQTLERLQKLADEKVKIFGFYSSMKKEEKEKFEKSFEEDD-YHILVF 180 (1104)
T ss_dssp TTCCHHHHHHHHHHHHHTTTCCEEEEESSHHHHHHHHHHHHTTSCTTSCEEEECTTCCTTHHHHHHHHHHTSC-CSEEEE
T ss_pred CCCcHHHHHHHHHHHHHhcCCeEEEEechHHHHHHHHHHHHHhhCCCCeEEEEeCCCCHHHHHHHHHHHhCCC-CCEEEE
Confidence 456888766666555556788999999999998888888887 5778999999999988888999988763 456777
Q ss_pred eccccccc---cCcCccCEEEEe
Q psy2046 97 STKAGGLG---INLTAADTVIIH 116 (138)
Q Consensus 97 ~~~~~~~G---l~l~~~~~vi~~ 116 (138)
++...-.- +++.....+|+=
T Consensus 181 Tp~rL~~~l~~l~~~~l~~lViD 203 (1104)
T 4ddu_A 181 STQFVSKNREKLSQKRFDFVFVD 203 (1104)
T ss_dssp EHHHHHHSHHHHHTSCCSEEEES
T ss_pred CHHHHHHHHHhhcccCcCEEEEe
Confidence 76655222 334566666663
No 80
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=94.54 E-value=0.51 Score=39.42 Aligned_cols=98 Identities=9% Similarity=0.020 Sum_probs=70.7
Q ss_pred ccCchHHHHHHHHHHhhhCCCeEEEEeccHHHHHHHHHHHh----hcCCeEEEEeCCCChHHHHHHHHHHhcCCCceEEE
Q psy2046 20 VESGKLKKLDEILPDLKKNGHRVLIFSQFIFVLDILGHYMD----IRGWRHLRLDGATQVSSRQELIDEYNRDQDLFAFL 95 (138)
Q Consensus 20 ~~s~K~~~l~~ll~~~~~~~~k~iif~~~~~~~~~l~~~l~----~~g~~~~~i~g~~~~~~R~~~~~~F~~~~~~~vll 95 (138)
.-++|..............+.+++|.+++..-+....+.+. ..++.+..++|..+..++...++....+. ..+++
T Consensus 633 TGsGKT~val~aa~~~~~~g~~vlvlvPt~~La~Q~~~~~~~~~~~~~i~v~~l~~~~~~~~~~~~~~~l~~g~-~dIvV 711 (1151)
T 2eyq_A 633 VGFGKTEVAMRAAFLAVDNHKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGK-IDILI 711 (1151)
T ss_dssp CCTTTHHHHHHHHHHHHTTTCEEEEECSSHHHHHHHHHHHHHHSTTTTCCEEEESTTSCHHHHHHHHHHHHTTC-CSEEE
T ss_pred CCCCHHHHHHHHHHHHHHhCCeEEEEechHHHHHHHHHHHHHHhhcCCCeEEEEeCCCCHHHHHHHHHHHhcCC-CCEEE
Confidence 34678766554444445567899999999877665555554 34678899999999999999999888764 45677
Q ss_pred EeccccccccCcCccCEEEEeCC
Q psy2046 96 LSTKAGGLGINLTAADTVIIHDV 118 (138)
Q Consensus 96 ~~~~~~~~Gl~l~~~~~vi~~~~ 118 (138)
++.......+.+.+...+|+=+.
T Consensus 712 ~T~~ll~~~~~~~~l~lvIiDEa 734 (1151)
T 2eyq_A 712 GTHKLLQSDVKFKDLGLLIVDEE 734 (1151)
T ss_dssp ECTHHHHSCCCCSSEEEEEEESG
T ss_pred ECHHHHhCCccccccceEEEech
Confidence 77777777777777777766443
No 81
>3ipz_A Monothiol glutaredoxin-S14, chloroplastic; electron transport, PL redox-active center, transit peptide, transport, oxidoreduc; 2.40A {Arabidopsis thaliana} PDB: 2lku_A
Probab=93.96 E-value=0.52 Score=27.86 Aligned_cols=55 Identities=13% Similarity=0.100 Sum_probs=38.4
Q ss_pred HHHHHHhhhCCCeEEEEec------cHHHHHHHHHHHhhcCCeEEEEeCCCChHHHHHHHHH
Q psy2046 29 DEILPDLKKNGHRVLIFSQ------FIFVLDILGHYMDIRGWRHLRLDGATQVSSRQELIDE 84 (138)
Q Consensus 29 ~~ll~~~~~~~~k~iif~~------~~~~~~~l~~~l~~~g~~~~~i~g~~~~~~R~~~~~~ 84 (138)
.+.+..+.. ..+++||+. +.-.......+|...|+++..++=...+..+..+.+.
T Consensus 8 ~~~v~~~i~-~~~Vvvy~k~t~~~p~Cp~C~~ak~~L~~~gi~~~~~dI~~~~~~~~~l~~~ 68 (109)
T 3ipz_A 8 KDTLEKLVN-SEKVVLFMKGTRDFPMCGFSNTVVQILKNLNVPFEDVNILENEMLRQGLKEY 68 (109)
T ss_dssp HHHHHHHHT-SSSEEEEESBCSSSBSSHHHHHHHHHHHHTTCCCEEEEGGGCHHHHHHHHHH
T ss_pred HHHHHHHHc-cCCEEEEEecCCCCCCChhHHHHHHHHHHcCCCcEEEECCCCHHHHHHHHHH
Confidence 344444444 448999997 4778899999999999998888755555555544443
No 82
>3zyw_A Glutaredoxin-3; metal binding protein; 1.84A {Homo sapiens}
Probab=93.57 E-value=0.57 Score=27.87 Aligned_cols=53 Identities=13% Similarity=0.055 Sum_probs=37.1
Q ss_pred HHHHHhhhCCCeEEEEec------cHHHHHHHHHHHhhcCCeEEEEeCCCChHHHHHHHH
Q psy2046 30 EILPDLKKNGHRVLIFSQ------FIFVLDILGHYMDIRGWRHLRLDGATQVSSRQELID 83 (138)
Q Consensus 30 ~ll~~~~~~~~k~iif~~------~~~~~~~l~~~l~~~g~~~~~i~g~~~~~~R~~~~~ 83 (138)
+.++.+.+ ..+++||+. +.........+|...|+++..++=...+..+..+.+
T Consensus 7 ~~v~~~i~-~~~Vvlf~kg~~~~~~Cp~C~~ak~~L~~~gi~y~~~di~~d~~~~~~l~~ 65 (111)
T 3zyw_A 7 LRLKKLTH-AAPCMLFMKGTPQEPRCGFSKQMVEILHKHNIQFSSFDIFSDEEVRQGLKA 65 (111)
T ss_dssp HHHHHHHT-SSSEEEEESBCSSSBSSHHHHHHHHHHHHTTCCCEEEEGGGCHHHHHHHHH
T ss_pred HHHHHHHh-cCCEEEEEecCCCCCcchhHHHHHHHHHHcCCCeEEEECcCCHHHHHHHHH
Confidence 33444333 448999994 667788999999999999988876555555554443
No 83
>3gx8_A Monothiol glutaredoxin-5, mitochondrial; TRX fold, electron transport, mitochondrion, redox-active center, transit peptide, transport; 1.67A {Saccharomyces cerevisiae}
Probab=92.70 E-value=0.98 Score=27.29 Aligned_cols=54 Identities=9% Similarity=0.018 Sum_probs=37.8
Q ss_pred HHHHHhhhCCCeEEEEec------cHHHHHHHHHHHhhcCCe---EEEEeCCCChHHHHHHHHH
Q psy2046 30 EILPDLKKNGHRVLIFSQ------FIFVLDILGHYMDIRGWR---HLRLDGATQVSSRQELIDE 84 (138)
Q Consensus 30 ~ll~~~~~~~~k~iif~~------~~~~~~~l~~~l~~~g~~---~~~i~g~~~~~~R~~~~~~ 84 (138)
+.++.+.. ..+++||+. +.-........|...|++ +..++=......+..+.+.
T Consensus 7 ~~v~~~i~-~~~Vvvfsk~t~~~p~Cp~C~~ak~lL~~~gv~~~~~~~~dv~~~~~~~~~l~~~ 69 (121)
T 3gx8_A 7 KAIEDAIE-SAPVVLFMKGTPEFPKCGFSRATIGLLGNQGVDPAKFAAYNVLEDPELREGIKEF 69 (121)
T ss_dssp HHHHHHHH-SCSEEEEESBCSSSBCTTHHHHHHHHHHHHTBCGGGEEEEECTTCHHHHHHHHHH
T ss_pred HHHHHHhc-cCCEEEEEeccCCCCCCccHHHHHHHHHHcCCCcceEEEEEecCCHHHHHHHHHH
Confidence 34444444 348999998 467888999999999998 7777766665555544443
No 84
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B*
Probab=92.48 E-value=1 Score=37.26 Aligned_cols=93 Identities=11% Similarity=0.042 Sum_probs=65.4
Q ss_pred ccCchHHHHHHHHHHhhhCCCeEEEEeccHHHHHHHHHHHhh----cCC----eEEEEeCCCChHHHHHHHHHHhcCCCc
Q psy2046 20 VESGKLKKLDEILPDLKKNGHRVLIFSQFIFVLDILGHYMDI----RGW----RHLRLDGATQVSSRQELIDEYNRDQDL 91 (138)
Q Consensus 20 ~~s~K~~~l~~ll~~~~~~~~k~iif~~~~~~~~~l~~~l~~----~g~----~~~~i~g~~~~~~R~~~~~~F~~~~~~ 91 (138)
.-++|.....-++..+...+.+++|.+++..-+..+.+.++. .++ .+..++|+.+..++.+..+.++. .
T Consensus 80 TGSGKTl~~lp~l~~~~~~~~~~lil~PtreLa~Q~~~~l~~l~~~~~i~~~~~v~~~~Gg~~~~~~~~~~~~l~~---~ 156 (1054)
T 1gku_B 80 TGVGKTSFGLAMSLFLALKGKRCYVIFPTSLLVIQAAETIRKYAEKAGVGTENLIGYYHGRIPKREKENFMQNLRN---F 156 (1054)
T ss_dssp BTSCSHHHHHHHHHHHHTTSCCEEEEESCHHHHHHHHHHHHHHHTTTCCSGGGSEEECCSSCCSHHHHHHHHSGGG---C
T ss_pred CCCCHHHHHHHHHHHHhhcCCeEEEEeccHHHHHHHHHHHHHHHhhcCCCccceEEEEeCCCChhhHHHHHhhccC---C
Confidence 346887666666666666788999999999876666665554 466 78999999998888878887766 4
Q ss_pred eEEEEeccccccccC-cCccCEEEE
Q psy2046 92 FAFLLSTKAGGLGIN-LTAADTVII 115 (138)
Q Consensus 92 ~vll~~~~~~~~Gl~-l~~~~~vi~ 115 (138)
.++++++...-.-+. +...+.+|+
T Consensus 157 ~IlV~TP~~L~~~l~~L~~l~~lVi 181 (1054)
T 1gku_B 157 KIVITTTQFLSKHYRELGHFDFIFV 181 (1054)
T ss_dssp SEEEEEHHHHHHCSTTSCCCSEEEE
T ss_pred CEEEEcHHHHHHHHHHhccCCEEEE
Confidence 567777665443333 445555555
No 85
>2wem_A Glutaredoxin-related protein 5; chromosome 14 open reading frame 87, Fe/S cluster, oxidoreductase, thioredoxin family, GLRX5, FLB4739, C14ORF87; HET: GTT; 2.40A {Homo sapiens} PDB: 2wul_A*
Probab=91.79 E-value=1.3 Score=26.68 Aligned_cols=43 Identities=16% Similarity=0.191 Sum_probs=33.3
Q ss_pred eEEEEec------cHHHHHHHHHHHhhcCCe-EEEEeCCCChHHHHHHHH
Q psy2046 41 RVLIFSQ------FIFVLDILGHYMDIRGWR-HLRLDGATQVSSRQELID 83 (138)
Q Consensus 41 k~iif~~------~~~~~~~l~~~l~~~g~~-~~~i~g~~~~~~R~~~~~ 83 (138)
+++||+. +.-........|...|++ |..++=...++.+..+.+
T Consensus 21 ~Vvvfsk~t~~~p~Cp~C~~ak~lL~~~gv~~~~~vdV~~d~~~~~~l~~ 70 (118)
T 2wem_A 21 KVVVFLKGTPEQPQCGFSNAVVQILRLHGVRDYAAYNVLDDPELRQGIKD 70 (118)
T ss_dssp SEEEEESBCSSSBSSHHHHHHHHHHHHTTCCCCEEEESSSCHHHHHHHHH
T ss_pred CEEEEEecCCCCCccHHHHHHHHHHHHcCCCCCEEEEcCCCHHHHHHHHH
Confidence 8999998 577889999999999995 888876666555554443
No 86
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=91.72 E-value=2.1 Score=31.10 Aligned_cols=93 Identities=13% Similarity=0.075 Sum_probs=61.0
Q ss_pred ccCchHHHHHHHHHHhh-hCCCeEEEEeccHHHHHHHHHHHhhc-CC---eEEEEeCCCChHHHHHHHHHHhcCCCceEE
Q psy2046 20 VESGKLKKLDEILPDLK-KNGHRVLIFSQFIFVLDILGHYMDIR-GW---RHLRLDGATQVSSRQELIDEYNRDQDLFAF 94 (138)
Q Consensus 20 ~~s~K~~~l~~ll~~~~-~~~~k~iif~~~~~~~~~l~~~l~~~-g~---~~~~i~g~~~~~~R~~~~~~F~~~~~~~vl 94 (138)
.-++|.-...-.+.... ..+.+++|.++....+....+.+.+. +. .+..++|+.+..++...... ..++
T Consensus 32 tG~GKT~~~~~~~~~~~~~~~~~~liv~P~~~L~~q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~------~~iv 105 (494)
T 1wp9_A 32 TGLGKTLIAMMIAEYRLTKYGGKVLMLAPTKPLVLQHAESFRRLFNLPPEKIVALTGEKSPEERSKAWAR------AKVI 105 (494)
T ss_dssp TTSCHHHHHHHHHHHHHHHSCSCEEEECSSHHHHHHHHHHHHHHBCSCGGGEEEECSCSCHHHHHHHHHH------CSEE
T ss_pred CCCCHHHHHHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHHHHHhCcchhheEEeeCCcchhhhhhhccC------CCEE
Confidence 34678776666655433 46779999999988777777777664 55 78999999987766544331 2456
Q ss_pred EEecccccc-----ccCcCccCEEEEeCC
Q psy2046 95 LLSTKAGGL-----GINLTAADTVIIHDV 118 (138)
Q Consensus 95 l~~~~~~~~-----Gl~l~~~~~vi~~~~ 118 (138)
++++..... .+.+...+.||+=+.
T Consensus 106 v~T~~~l~~~~~~~~~~~~~~~~vIiDEa 134 (494)
T 1wp9_A 106 VATPQTIENDLLAGRISLEDVSLIVFDEA 134 (494)
T ss_dssp EECHHHHHHHHHTTSCCTTSCSEEEEETG
T ss_pred EecHHHHHHHHhcCCcchhhceEEEEECC
Confidence 766665432 344556666666433
No 87
>2wul_A Glutaredoxin related protein 5; chromosome 14 open reading frame 87, oxidoreductase, thiored family, GLRX5, FLB4739; HET: GSH; 2.40A {Homo sapiens}
Probab=91.02 E-value=1.6 Score=26.38 Aligned_cols=56 Identities=14% Similarity=0.169 Sum_probs=36.4
Q ss_pred CeEEEEec------cHHHHHHHHHHHhhcCC-eEEEEeCCCChHHHHHHHHHHhcCCCceEEEE
Q psy2046 40 HRVLIFSQ------FIFVLDILGHYMDIRGW-RHLRLDGATQVSSRQELIDEYNRDQDLFAFLL 96 (138)
Q Consensus 40 ~k~iif~~------~~~~~~~l~~~l~~~g~-~~~~i~g~~~~~~R~~~~~~F~~~~~~~vll~ 96 (138)
.+++||+. +........+.|...|+ +|..+.=...++-|.. +.++...+..-.+++
T Consensus 20 ~~VvvF~Kgt~~~P~C~fc~~ak~lL~~~gv~~~~~~~v~~~~~~r~~-l~~~sg~~TvPqIFI 82 (118)
T 2wul_A 20 DKVVVFLKGTPEQPQCGFSNAVVQILRLHGVRDYAAYNVLDDPELRQG-IKDYSNWPTIPQVYL 82 (118)
T ss_dssp SSEEEEESBCSSSBSSHHHHHHHHHHHHTTCCSCEEEETTSCHHHHHH-HHHHHTCCSSCEEEE
T ss_pred CCEEEEEcCCCCCCCCHHHHHHHHHHHHhCCcCeEeecccCCHHHHHH-HHHhccCCCCCeEeE
Confidence 38999975 35667888888988888 5777776666555554 444544433323444
No 88
>3g5j_A Putative ATP/GTP binding protein; N-terminal domain of ATP/GTP binding protein, PSI, MCSG, STR genomics, protein structure initiative; HET: PGE; 1.76A {Clostridium difficile}
Probab=90.93 E-value=0.63 Score=28.08 Aligned_cols=48 Identities=13% Similarity=0.139 Sum_probs=34.4
Q ss_pred HHHHHHHHHhhhCC-CeEEEEec-cHHHHHHHHHHHhhcCCeEEEEeCCCC
Q psy2046 26 KKLDEILPDLKKNG-HRVLIFSQ-FIFVLDILGHYMDIRGWRHLRLDGATQ 74 (138)
Q Consensus 26 ~~l~~ll~~~~~~~-~k~iif~~-~~~~~~~l~~~l~~~g~~~~~i~g~~~ 74 (138)
..+.+.+..+ ..+ .++|+||. .-.........|+..|+++..+.|+..
T Consensus 76 ~~~~~~~~~~-~~~~~~ivvyC~~~G~rs~~a~~~L~~~G~~v~~l~GG~~ 125 (134)
T 3g5j_A 76 KDIYLQAAEL-ALNYDNIVIYCARGGMRSGSIVNLLSSLGVNVYQLEGGYK 125 (134)
T ss_dssp HHHHHHHHHH-HTTCSEEEEECSSSSHHHHHHHHHHHHTTCCCEEETTHHH
T ss_pred HHHHHHHHHh-ccCCCeEEEEECCCChHHHHHHHHHHHcCCceEEEeCcHH
Confidence 4455555444 344 78999994 555667888889999998888888764
No 89
>2wci_A Glutaredoxin-4; redox-active center, iron-sulfur cluster scaffolder, Fe2S2, homodimer, transport, glutathione, thioredoxin fold; HET: GSH; 1.90A {Escherichia coli} PDB: 1yka_A
Probab=90.82 E-value=1.9 Score=26.68 Aligned_cols=56 Identities=14% Similarity=-0.000 Sum_probs=38.8
Q ss_pred HHHHHHhhhCCCeEEEEec------cHHHHHHHHHHHhhcCCeEEEEeCCCChHHHHHHHHHH
Q psy2046 29 DEILPDLKKNGHRVLIFSQ------FIFVLDILGHYMDIRGWRHLRLDGATQVSSRQELIDEY 85 (138)
Q Consensus 29 ~~ll~~~~~~~~k~iif~~------~~~~~~~l~~~l~~~g~~~~~i~g~~~~~~R~~~~~~F 85 (138)
.+.+..+.... +++||+. +...+.....+|...|++|..++=...+..+..+.+..
T Consensus 25 ~~~v~~~i~~~-~Vvvy~ks~~~~~~Cp~C~~ak~~L~~~gv~y~~vdI~~d~~~~~~L~~~~ 86 (135)
T 2wci_A 25 IEKIQRQIAEN-PILLYMKGSPKLPSCGFSAQAVQALAACGERFAYVDILQNPDIRAELPKYA 86 (135)
T ss_dssp HHHHHHHHHHC-SEEEEESBCSSSBSSHHHHHHHHHHHTTCSCCEEEEGGGCHHHHHHHHHHH
T ss_pred HHHHHHHhccC-CEEEEEEecCCCCCCccHHHHHHHHHHcCCceEEEECCCCHHHHHHHHHHH
Confidence 33444433333 7999976 56778899999999999998887766666555555444
No 90
>2yan_A Glutaredoxin-3; oxidoreductase; HET: GSH; 1.90A {Homo sapiens}
Probab=90.70 E-value=1.5 Score=25.41 Aligned_cols=56 Identities=20% Similarity=0.089 Sum_probs=39.3
Q ss_pred HHHHHhhhCCCeEEEEe------ccHHHHHHHHHHHhhcCCeEEEEeCCCChHHHHHHHHHHh
Q psy2046 30 EILPDLKKNGHRVLIFS------QFIFVLDILGHYMDIRGWRHLRLDGATQVSSRQELIDEYN 86 (138)
Q Consensus 30 ~ll~~~~~~~~k~iif~------~~~~~~~~l~~~l~~~g~~~~~i~g~~~~~~R~~~~~~F~ 86 (138)
+.+..+... .+++||+ .+...+..+..+|...++++..++=...+..+..+.+.+.
T Consensus 8 ~~~~~~i~~-~~vvvf~~g~~~~~~C~~C~~~~~~L~~~~i~~~~vdi~~~~~~~~~l~~~~g 69 (105)
T 2yan_A 8 ERLKVLTNK-ASVMLFMKGNKQEAKCGFSKQILEILNSTGVEYETFDILEDEEVRQGLKAYSN 69 (105)
T ss_dssp HHHHHHHTS-SSEEEEESBCSSSBCTTHHHHHHHHHHHHTCCCEEEEGGGCHHHHHHHHHHHT
T ss_pred HHHHHHhcc-CCEEEEEecCCCCCCCccHHHHHHHHHHCCCCeEEEECCCCHHHHHHHHHHHC
Confidence 334443333 3799998 4567788999999999999988887766666666555554
No 91
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=89.61 E-value=1.6 Score=32.64 Aligned_cols=91 Identities=21% Similarity=0.139 Sum_probs=54.6
Q ss_pred ccCchHHHHHHHHHHhhhC-----CCeEEEEeccHHHHHHHHHHHhh----cCCeEEEEeCCCChHHHHHHHHHHhcCCC
Q psy2046 20 VESGKLKKLDEILPDLKKN-----GHRVLIFSQFIFVLDILGHYMDI----RGWRHLRLDGATQVSSRQELIDEYNRDQD 90 (138)
Q Consensus 20 ~~s~K~~~l~~ll~~~~~~-----~~k~iif~~~~~~~~~l~~~l~~----~g~~~~~i~g~~~~~~R~~~~~~F~~~~~ 90 (138)
.-++|.-...-.+...... +.++||.++...-+......+.. .++.+..++|+.+...+...+. .+
T Consensus 28 tGsGKT~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~---~~-- 102 (555)
T 3tbk_A 28 TGCGKTFVSLLICEHHLKKFPCGQKGKVVFFANQIPVYEQQATVFSRYFERLGYNIASISGATSDSVSVQHII---ED-- 102 (555)
T ss_dssp TTSCHHHHHHHHHHHHHHTCCSSCCCCEEEECSSHHHHHHHHHHHHHHHHTTTCCEEEECTTTGGGSCHHHHH---HH--
T ss_pred CCChHHHHHHHHHHHHHHhcccCCCCEEEEEeCCHHHHHHHHHHHHHHhccCCcEEEEEcCCCcchhhHHHHh---cC--
Confidence 3467876554444433322 67899999998766655555554 3899999999987655433332 12
Q ss_pred ceEEEEeccccccc-----c-CcCccCEEEE
Q psy2046 91 LFAFLLSTKAGGLG-----I-NLTAADTVII 115 (138)
Q Consensus 91 ~~vll~~~~~~~~G-----l-~l~~~~~vi~ 115 (138)
..++++++.....- + .+...+.+|+
T Consensus 103 ~~i~v~T~~~l~~~~~~~~~~~~~~~~~vVi 133 (555)
T 3tbk_A 103 NDIIILTPQILVNNLNNGAIPSLSVFTLMIF 133 (555)
T ss_dssp CSEEEECHHHHHHHHHTSSSCCGGGCSEEEE
T ss_pred CCEEEECHHHHHHHHhcCcccccccCCEEEE
Confidence 23566666554321 2 4445566665
No 92
>2lnd_A De novo designed protein, PFK fold; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Artificial gene}
Probab=89.33 E-value=1.8 Score=24.36 Aligned_cols=61 Identities=13% Similarity=0.189 Sum_probs=45.2
Q ss_pred HHHHHHHHHHhhhCCCeEEEEeccH--HHHHHHHHHHhhcCCeEEEEeCCCChHHHHHHHHHHh
Q psy2046 25 LKKLDEILPDLKKNGHRVLIFSQFI--FVLDILGHYMDIRGWRHLRLDGATQVSSRQELIDEYN 86 (138)
Q Consensus 25 ~~~l~~ll~~~~~~~~k~iif~~~~--~~~~~l~~~l~~~g~~~~~i~g~~~~~~R~~~~~~F~ 86 (138)
-..+.++++.+..+|+..+||++-. .........-++.|+.|-.+.+.. +++-.+.++.|-
T Consensus 37 sqdirdiiksmkdngkplvvfvngasqndvnefqneakkegvsydvlkstd-peeltqrvrefl 99 (112)
T 2lnd_A 37 SQDIRDIIKSMKDNGKPLVVFVNGASQNDVNEFQNEAKKEGVSYDVLKSTD-PEELTQRVREFL 99 (112)
T ss_dssp HHHHHHHHHHHTTCCSCEEEEECSCCHHHHHHHHHHHHHHTCEEEEEECCC-HHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHhcCCeEEEEecCcccccHHHHHHHHHhcCcchhhhccCC-HHHHHHHHHHHH
Confidence 4456778888888999999999754 456667777778899998888754 555556666664
No 93
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=88.52 E-value=3.9 Score=27.04 Aligned_cols=89 Identities=15% Similarity=0.033 Sum_probs=56.4
Q ss_pred cCchHHH-HHHHHHHhhh--CCCeEEEEeccHHHHHHHHHHHhhc-----CCeEEEEeCCCChHHHHHHHHHHhcCCCce
Q psy2046 21 ESGKLKK-LDEILPDLKK--NGHRVLIFSQFIFVLDILGHYMDIR-----GWRHLRLDGATQVSSRQELIDEYNRDQDLF 92 (138)
Q Consensus 21 ~s~K~~~-l~~ll~~~~~--~~~k~iif~~~~~~~~~l~~~l~~~-----g~~~~~i~g~~~~~~R~~~~~~F~~~~~~~ 92 (138)
-++|... +.-++..+.. .+.+++|.++...-...+.+.++.. ++.+..++|+.+..++.+.+ + ...
T Consensus 71 GsGKT~~~~l~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~---~---~~~ 144 (230)
T 2oxc_A 71 GTGKTCVFSTIALDSLVLENLSTQILILAPTREIAVQIHSVITAIGIKMEGLECHVFIGGTPLSQDKTRL---K---KCH 144 (230)
T ss_dssp TSSHHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHHHTTTSTTCCEEEECTTSCHHHHHHHT---T---SCS
T ss_pred CCcHHHHHHHHHHHHHHhcCCCceEEEEeCCHHHHHHHHHHHHHHhcccCCceEEEEeCCCCHHHHHHhc---c---CCC
Confidence 4678765 4445554432 3568999999988877777777654 67788999998866554433 2 234
Q ss_pred EEEEeccccc-----cccCcCccCEEEE
Q psy2046 93 AFLLSTKAGG-----LGINLTAADTVII 115 (138)
Q Consensus 93 vll~~~~~~~-----~Gl~l~~~~~vi~ 115 (138)
+++.++.... ..+++...+.+|+
T Consensus 145 Iiv~Tp~~l~~~~~~~~~~~~~~~~lVi 172 (230)
T 2oxc_A 145 IAVGSPGRIKQLIELDYLNPGSIRLFIL 172 (230)
T ss_dssp EEEECHHHHHHHHHTTSSCGGGCCEEEE
T ss_pred EEEECHHHHHHHHhcCCcccccCCEEEe
Confidence 5666665432 2345556666665
No 94
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=88.11 E-value=3.9 Score=26.65 Aligned_cols=93 Identities=11% Similarity=0.046 Sum_probs=57.3
Q ss_pred cCchHHHHHHHH-HHhhhC--CCeEEEEeccHHHHHHHHHHHhhc-----CCeEEEEeCCCChHHHHHHHHHHhcCCCce
Q psy2046 21 ESGKLKKLDEIL-PDLKKN--GHRVLIFSQFIFVLDILGHYMDIR-----GWRHLRLDGATQVSSRQELIDEYNRDQDLF 92 (138)
Q Consensus 21 ~s~K~~~l~~ll-~~~~~~--~~k~iif~~~~~~~~~l~~~l~~~-----g~~~~~i~g~~~~~~R~~~~~~F~~~~~~~ 92 (138)
-++|.....-.+ ..+... +.+++|.+++..-+..+.+.+++. ++.+..++|+.+..+..+.+. .+ ...
T Consensus 61 GsGKT~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~---~~-~~~ 136 (220)
T 1t6n_A 61 GMGKTAVFVLATLQQLEPVTGQVSVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLK---KN-CPH 136 (220)
T ss_dssp TSCHHHHHHHHHHHHCCCCTTCCCEEEECSCHHHHHHHHHHHHHHTTTSTTCCEEEESCCSCHHHHHHHHH---HS-CCS
T ss_pred CCchhhhhhHHHHHhhhccCCCEEEEEEeCCHHHHHHHHHHHHHHHhhCCCceEEEEeCCCChHHHHHHHh---cC-CCC
Confidence 467765544333 332222 348999999988877777766654 788999999988666554443 22 234
Q ss_pred EEEEeccccc-----cccCcCccCEEEEeC
Q psy2046 93 AFLLSTKAGG-----LGINLTAADTVIIHD 117 (138)
Q Consensus 93 vll~~~~~~~-----~Gl~l~~~~~vi~~~ 117 (138)
+++.++.... ..+++...+.+|+=+
T Consensus 137 i~v~T~~~l~~~~~~~~~~~~~~~~lViDE 166 (220)
T 1t6n_A 137 IVVGTPGRILALARNKSLNLKHIKHFILDE 166 (220)
T ss_dssp EEEECHHHHHHHHHTTSSCCTTCCEEEEES
T ss_pred EEEeCHHHHHHHHHhCCCCcccCCEEEEcC
Confidence 5666655432 335566667777643
No 95
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos}
Probab=88.11 E-value=2.9 Score=33.33 Aligned_cols=90 Identities=14% Similarity=0.096 Sum_probs=50.8
Q ss_pred cCchHHHHHHHHHHhhhC-----CCeEEEEeccHHHHHHHHHHHhh----cCCeEEEEeCCCChHHHHHHHHHHhcCCCc
Q psy2046 21 ESGKLKKLDEILPDLKKN-----GHRVLIFSQFIFVLDILGHYMDI----RGWRHLRLDGATQVSSRQELIDEYNRDQDL 91 (138)
Q Consensus 21 ~s~K~~~l~~ll~~~~~~-----~~k~iif~~~~~~~~~l~~~l~~----~g~~~~~i~g~~~~~~R~~~~~~F~~~~~~ 91 (138)
-++|.....-.+...... +.++||.++....+......+++ .++.+..++|+.+...+...+. .+ .
T Consensus 273 GsGKTl~~~~~i~~~l~~~~~~~~~~~Lvl~Pt~~L~~Q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~---~~--~ 347 (797)
T 4a2q_A 273 GSGKTFVSILICEHHFQNMPAGRKAKVVFLATKVPVYEQQKNVFKHHFERQGYSVQGISGENFSNVSVEKVI---ED--S 347 (797)
T ss_dssp TSCHHHHHHHHHHHHHHTCCSSCCCCEEEECSSHHHHHHHHHHHHHHHGGGTCCEEEECCC-----CHHHHH---HT--C
T ss_pred CChHHHHHHHHHHHHHHhccccCCCeEEEEeCCHHHHHHHHHHHHHhcccCCceEEEEeCCcchhhhHHHhh---CC--C
Confidence 467766555444443332 67899999988776665555544 4899999999987554433222 22 3
Q ss_pred eEEEEeccccccc-----c-CcCccCEEEE
Q psy2046 92 FAFLLSTKAGGLG-----I-NLTAADTVII 115 (138)
Q Consensus 92 ~vll~~~~~~~~G-----l-~l~~~~~vi~ 115 (138)
.++++++.....- + .+...+.||+
T Consensus 348 ~Ivv~Tp~~l~~~l~~~~~~~~~~~~~iVi 377 (797)
T 4a2q_A 348 DIIVVTPQILVNSFEDGTLTSLSIFTLMIF 377 (797)
T ss_dssp SEEEECHHHHHHHHHSSSCCCGGGCSEEEE
T ss_pred CEEEEchHHHHHHHHhccccccccCCEEEE
Confidence 4566666554321 2 3445566665
No 96
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Probab=87.85 E-value=5.4 Score=30.17 Aligned_cols=62 Identities=10% Similarity=0.110 Sum_probs=51.3
Q ss_pred CCeEEEEeccHHHHHHHHHHHhhcCCeEEEEeCCCChHHHHHHHHHHhcCCCceEEEEecccc
Q psy2046 39 GHRVLIFSQFIFVLDILGHYMDIRGWRHLRLDGATQVSSRQELIDEYNRDQDLFAFLLSTKAG 101 (138)
Q Consensus 39 ~~k~iif~~~~~~~~~l~~~l~~~g~~~~~i~g~~~~~~R~~~~~~F~~~~~~~vll~~~~~~ 101 (138)
+.++||.++.+.-.....+.|...|+++..++|..+..++.........+. ..++++++...
T Consensus 65 ~g~~lvi~P~~aL~~q~~~~l~~~gi~~~~l~~~~~~~~~~~~~~~~~~~~-~~ilv~Tpe~l 126 (523)
T 1oyw_A 65 NGLTVVVSPLISLMKDQVDQLQANGVAAACLNSTQTREQQLEVMTGCRTGQ-IRLLYIAPERL 126 (523)
T ss_dssp SSEEEEECSCHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHHTC-CSEEEECHHHH
T ss_pred CCCEEEECChHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhcCC-CCEEEECHHHH
Confidence 458999999999888888889999999999999999888888888887663 45677776654
No 97
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=87.71 E-value=2.3 Score=31.85 Aligned_cols=92 Identities=15% Similarity=0.117 Sum_probs=52.1
Q ss_pred ccCchHHHHHHHHHHhhhC-----CCeEEEEeccHHHHHHHHHHHhh----cCCeEEEEeCCCChHHHHHHHHHHhcCCC
Q psy2046 20 VESGKLKKLDEILPDLKKN-----GHRVLIFSQFIFVLDILGHYMDI----RGWRHLRLDGATQVSSRQELIDEYNRDQD 90 (138)
Q Consensus 20 ~~s~K~~~l~~ll~~~~~~-----~~k~iif~~~~~~~~~l~~~l~~----~g~~~~~i~g~~~~~~R~~~~~~F~~~~~ 90 (138)
.-++|.....-.+...... +.++||.++...-+..+.+.++. .++.+..++|+.+...+...+. .+
T Consensus 31 tGsGKT~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~---~~-- 105 (556)
T 4a2p_A 31 TGSGKTFVSILICEHHFQNMPAGRKAKVVFLATKVPVYEQQKNVFKHHFERQGYSVQGISGENFSNVSVEKVI---ED-- 105 (556)
T ss_dssp TTSCHHHHHHHHHHHHHHTCCSSCCCCEEEECSSHHHHHHHHHHHHHHHGGGTCCEEECCCC-----CHHHHH---HH--
T ss_pred CCChHHHHHHHHHHHHHHhCcccCCCeEEEEeCCHHHHHHHHHHHHHHhcccCceEEEEeCCCCcchhHHHhh---CC--
Confidence 3467876554444433322 66899999998776655555544 4899999999986554433222 12
Q ss_pred ceEEEEecccccc----c-c-CcCccCEEEEe
Q psy2046 91 LFAFLLSTKAGGL----G-I-NLTAADTVIIH 116 (138)
Q Consensus 91 ~~vll~~~~~~~~----G-l-~l~~~~~vi~~ 116 (138)
..++++++..... + + .+...+.+|+=
T Consensus 106 ~~i~v~T~~~l~~~~~~~~~~~~~~~~~vViD 137 (556)
T 4a2p_A 106 SDIIVVTPQILVNSFEDGTLTSLSIFTLMIFD 137 (556)
T ss_dssp CSEEEECHHHHHHHHHSSSCCCSTTCSEEEEE
T ss_pred CCEEEECHHHHHHHHHhCcccccccCCEEEEE
Confidence 2356666665432 1 2 45566666663
No 98
>3gk5_A Uncharacterized rhodanese-related protein TVG0868615; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.40A {Thermoplasma volcanium GSS1}
Probab=87.33 E-value=0.9 Score=26.66 Aligned_cols=46 Identities=13% Similarity=0.127 Sum_probs=34.6
Q ss_pred HHHHHHHhhhCCCeEEEEeccHHHHHHHHHHHhhcCCeEEEEeCCCC
Q psy2046 28 LDEILPDLKKNGHRVLIFSQFIFVLDILGHYMDIRGWRHLRLDGATQ 74 (138)
Q Consensus 28 l~~ll~~~~~~~~k~iif~~~~~~~~~l~~~l~~~g~~~~~i~g~~~ 74 (138)
+.+.+..+ ..+.++++||..-.........|+..|+++..+.|+..
T Consensus 45 l~~~~~~l-~~~~~ivvyC~~G~rs~~aa~~L~~~G~~v~~l~GG~~ 90 (108)
T 3gk5_A 45 LREKWKIL-ERDKKYAVICAHGNRSAAAVEFLSQLGLNIVDVEGGIQ 90 (108)
T ss_dssp HHHHGGGS-CTTSCEEEECSSSHHHHHHHHHHHTTTCCEEEETTHHH
T ss_pred HHHHHHhC-CCCCeEEEEcCCCcHHHHHHHHHHHcCCCEEEEcCcHH
Confidence 33334333 44678999999887788888999999998888888753
No 99
>1wik_A Thioredoxin-like protein 2; picot homology 2 domain, picot protein, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: c.47.1.1
Probab=86.70 E-value=2.9 Score=24.36 Aligned_cols=47 Identities=15% Similarity=0.024 Sum_probs=35.0
Q ss_pred CCeEEEEec------cHHHHHHHHHHHhhcCCeEEEEeCCCChHHHHHHHHHH
Q psy2046 39 GHRVLIFSQ------FIFVLDILGHYMDIRGWRHLRLDGATQVSSRQELIDEY 85 (138)
Q Consensus 39 ~~k~iif~~------~~~~~~~l~~~l~~~g~~~~~i~g~~~~~~R~~~~~~F 85 (138)
..+++||+. +...+.....+|...|+++..++=...+..+....+..
T Consensus 14 ~~~vvvy~~g~~~~~~Cp~C~~ak~~L~~~~i~~~~vdi~~~~~~~~~l~~~~ 66 (109)
T 1wik_A 14 KASVMLFMKGNKQEAKCGFSKQILEILNSTGVEYETFDILEDEEVRQGLKTFS 66 (109)
T ss_dssp TSSEEEEESSTTTCCCSSTHHHHHHHHHHTCSCEEEEESSSCHHHHHHHHHHH
T ss_pred cCCEEEEEecCCCCCCCchHHHHHHHHHHcCCCeEEEECCCCHHHHHHHHHHh
Confidence 347999977 34567888899999999999998877666666555544
No 100
>2lqo_A Putative glutaredoxin RV3198.1/MT3292; TRX fold, oxidoreductase; NMR {Mycobacterium tuberculosis}
Probab=86.53 E-value=3.1 Score=23.79 Aligned_cols=44 Identities=7% Similarity=-0.142 Sum_probs=34.4
Q ss_pred eEEEEeccH-HHHHHHHHHHhhcCCeEEEEeCCCChHHHHHHHHH
Q psy2046 41 RVLIFSQFI-FVLDILGHYMDIRGWRHLRLDGATQVSSRQELIDE 84 (138)
Q Consensus 41 k~iif~~~~-~~~~~l~~~l~~~g~~~~~i~g~~~~~~R~~~~~~ 84 (138)
++.||+... -.+.....+|++.|++|..++=..+++.++...+.
T Consensus 5 ~I~vYs~~~Cp~C~~aK~~L~~~gi~y~~idi~~d~~~~~~~~~~ 49 (92)
T 2lqo_A 5 ALTIYTTSWCGYCLRLKTALTANRIAYDEVDIEHNRAAAEFVGSV 49 (92)
T ss_dssp CEEEEECTTCSSHHHHHHHHHHTTCCCEEEETTTCHHHHHHHHHH
T ss_pred cEEEEcCCCCHhHHHHHHHHHhcCCceEEEEcCCCHHHHHHHHHH
Confidence 678887543 45788899999999999999988887777766554
No 101
>2jtq_A Phage shock protein E; solution structure rhodanese, stress response, transferase; NMR {Escherichia coli} PDB: 2jtr_A 2jts_A
Probab=86.51 E-value=2 Score=23.77 Aligned_cols=47 Identities=11% Similarity=0.148 Sum_probs=31.5
Q ss_pred HHHHHHHh-hhCCCeEEEEeccHHHHHHHHHHHhhcCCeEEEEeCCCC
Q psy2046 28 LDEILPDL-KKNGHRVLIFSQFIFVLDILGHYMDIRGWRHLRLDGATQ 74 (138)
Q Consensus 28 l~~ll~~~-~~~~~k~iif~~~~~~~~~l~~~l~~~g~~~~~i~g~~~ 74 (138)
+.+.+..+ ...+.+++++|..-.........|...|++-+.+.|+..
T Consensus 29 l~~~~~~l~~~~~~~ivv~C~~g~rs~~aa~~L~~~G~~~v~~lGG~~ 76 (85)
T 2jtq_A 29 VKERIATAVPDKNDTVKVYCNAGRQSGQAKEILSEMGYTHVENAGGLK 76 (85)
T ss_dssp HHHHHHHHCCCTTSEEEEEESSSHHHHHHHHHHHHTTCSSEEEEEETT
T ss_pred HHHHHHHhCCCCCCcEEEEcCCCchHHHHHHHHHHcCCCCEEeccCHH
Confidence 33444443 244678999999877777888899999986333336643
No 102
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=86.47 E-value=6.9 Score=27.70 Aligned_cols=92 Identities=12% Similarity=0.056 Sum_probs=57.7
Q ss_pred ccCchHHHHHH-HHHHhhh--CCCeEEEEeccHHHHHHHHHHHhhc-----CCeEEEEeCCCChHHHHHHHHHHhcCCCc
Q psy2046 20 VESGKLKKLDE-ILPDLKK--NGHRVLIFSQFIFVLDILGHYMDIR-----GWRHLRLDGATQVSSRQELIDEYNRDQDL 91 (138)
Q Consensus 20 ~~s~K~~~l~~-ll~~~~~--~~~k~iif~~~~~~~~~l~~~l~~~-----g~~~~~i~g~~~~~~R~~~~~~F~~~~~~ 91 (138)
.-++|.....- ++..+.. .+.+++|.+++..-+..+.+.+++. ++.+..++|+.+..+....+.. + ..
T Consensus 54 TGsGKT~~~~~~~~~~l~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~---~-~~ 129 (391)
T 1xti_A 54 SGMGKTAVFVLATLQQLEPVTGQVSVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKK---N-CP 129 (391)
T ss_dssp SCSSHHHHHHHHHHHHCCCCTTCCCEEEECSCHHHHHHHHHHHHHHTTTCTTCCEEEECTTSCHHHHHHHHHH---S-CC
T ss_pred CCCcHHHHHHHHHHHhhcccCCCeeEEEECCCHHHHHHHHHHHHHHHhhCCCeEEEEEeCCCCHHHHHHHHhc---C-CC
Confidence 34678765433 3333222 2458999999988877777766654 7889999999887665554442 2 23
Q ss_pred eEEEEeccccc-----cccCcCccCEEEE
Q psy2046 92 FAFLLSTKAGG-----LGINLTAADTVII 115 (138)
Q Consensus 92 ~vll~~~~~~~-----~Gl~l~~~~~vi~ 115 (138)
.++++++.... ..+++...+.+|+
T Consensus 130 ~iiv~T~~~l~~~~~~~~~~~~~~~~vVi 158 (391)
T 1xti_A 130 HIVVGTPGRILALARNKSLNLKHIKHFIL 158 (391)
T ss_dssp SEEEECHHHHHHHHHTTSSCCTTCSEEEE
T ss_pred CEEEECHHHHHHHHHcCCccccccCEEEE
Confidence 45666665542 2345566666666
No 103
>1u6t_A SH3 domain-binding glutamic acid-rich-like protein; SH3-binding, glutaredoxin, thioredoxin fold, crystallography, protein binding; HET: CIT; 1.90A {Homo sapiens} PDB: 1wry_A
Probab=86.00 E-value=1.8 Score=26.40 Aligned_cols=36 Identities=8% Similarity=-0.034 Sum_probs=32.1
Q ss_pred HHHHHHHHHHhhcCCeEEEEeCCCChHHHHHHHHHH
Q psy2046 50 FVLDILGHYMDIRGWRHLRLDGATQVSSRQELIDEY 85 (138)
Q Consensus 50 ~~~~~l~~~l~~~g~~~~~i~g~~~~~~R~~~~~~F 85 (138)
+....+..+|...|++|..++=++++..|.++.+..
T Consensus 17 k~c~~aK~lL~~kgV~feEidI~~d~~~r~eM~~~~ 52 (121)
T 1u6t_A 17 KKQQDVLGFLEANKIGFEEKDIAANEENRKWMRENV 52 (121)
T ss_dssp HHHHHHHHHHHHTTCCEEEEECTTCHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHCCCceEEEECCCCHHHHHHHHHhc
Confidence 335789999999999999999999999999999987
No 104
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=85.76 E-value=5.6 Score=26.06 Aligned_cols=90 Identities=14% Similarity=0.143 Sum_probs=51.6
Q ss_pred cCchHHH-HHHHHHHhh--------hCCCeEEEEeccHHHHHHHHHHHhhc---CCeEEEEeCCCChHHHHHHHHHHhcC
Q psy2046 21 ESGKLKK-LDEILPDLK--------KNGHRVLIFSQFIFVLDILGHYMDIR---GWRHLRLDGATQVSSRQELIDEYNRD 88 (138)
Q Consensus 21 ~s~K~~~-l~~ll~~~~--------~~~~k~iif~~~~~~~~~l~~~l~~~---g~~~~~i~g~~~~~~R~~~~~~F~~~ 88 (138)
-++|... +.-++..+. ..+.+++|.+++..-+..+.+.++.. ++....++|+.+..++... +..+
T Consensus 67 GsGKT~~~~l~~~~~l~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~ 143 (228)
T 3iuy_A 67 GTGKTLSYLMPGFIHLDSQPISREQRNGPGMLVLTPTRELALHVEAECSKYSYKGLKSICIYGGRNRNGQIED---ISKG 143 (228)
T ss_dssp TSCHHHHHHHHHHHHHC---------CCCSEEEECSSHHHHHHHHHHHHHHCCTTCCEEEECC------CHHH---HHSC
T ss_pred CChHHHHHHHHHHHHHHhccchhhccCCCcEEEEeCCHHHHHHHHHHHHHhcccCceEEEEECCCChHHHHHH---hcCC
Confidence 4677654 333343332 24668999999998888888777764 6788889988765444333 3333
Q ss_pred CCceEEEEeccccc-----cccCcCccCEEEE
Q psy2046 89 QDLFAFLLSTKAGG-----LGINLTAADTVII 115 (138)
Q Consensus 89 ~~~~vll~~~~~~~-----~Gl~l~~~~~vi~ 115 (138)
..++++++.... ..+++...+.+|+
T Consensus 144 --~~iiv~Tp~~l~~~~~~~~~~~~~~~~lVi 173 (228)
T 3iuy_A 144 --VDIIIATPGRLNDLQMNNSVNLRSITYLVI 173 (228)
T ss_dssp --CSEEEECHHHHHHHHHTTCCCCTTCCEEEE
T ss_pred --CCEEEECHHHHHHHHHcCCcCcccceEEEE
Confidence 345666654432 2455666776666
No 105
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=85.62 E-value=6.1 Score=30.50 Aligned_cols=63 Identities=10% Similarity=0.060 Sum_probs=50.8
Q ss_pred CCeEEEEeccHHHHHHHHHHHhhcCCeEEEEeCCCChHHHHHHHHHHhc-CCCceEEEEecccc
Q psy2046 39 GHRVLIFSQFIFVLDILGHYMDIRGWRHLRLDGATQVSSRQELIDEYNR-DQDLFAFLLSTKAG 101 (138)
Q Consensus 39 ~~k~iif~~~~~~~~~l~~~l~~~g~~~~~i~g~~~~~~R~~~~~~F~~-~~~~~vll~~~~~~ 101 (138)
+.++||.++...-.....+.|...|+++..++|+.+..++......... .....++++++...
T Consensus 84 ~g~~lVisP~~~L~~q~~~~l~~~gi~~~~l~~~~~~~~~~~~~~~l~~~~~~~~Ilv~Tpe~L 147 (591)
T 2v1x_A 84 DGFTLVICPLISLMEDQLMVLKQLGISATMLNASSSKEHVKWVHAEMVNKNSELKLIYVTPEKI 147 (591)
T ss_dssp SSEEEEECSCHHHHHHHHHHHHHHTCCEEECCSSCCHHHHHHHHHHHHCTTCCCCEEEECHHHH
T ss_pred CCcEEEEeCHHHHHHHHHHHHHhcCCcEEEEeCCCCHHHHHHHHHHhhcccCCCCEEEEChhHh
Confidence 4589999999998888888888889999999999999988888887742 23456677777543
No 106
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=85.48 E-value=6 Score=26.10 Aligned_cols=90 Identities=17% Similarity=0.125 Sum_probs=52.5
Q ss_pred ccCchHHHHH-HHHHHhh------hCCCeEEEEeccHHHHHHHHHHHhhc----CCeEEEEeCCCChHHHHHHHHHHhcC
Q psy2046 20 VESGKLKKLD-EILPDLK------KNGHRVLIFSQFIFVLDILGHYMDIR----GWRHLRLDGATQVSSRQELIDEYNRD 88 (138)
Q Consensus 20 ~~s~K~~~l~-~ll~~~~------~~~~k~iif~~~~~~~~~l~~~l~~~----g~~~~~i~g~~~~~~R~~~~~~F~~~ 88 (138)
.-++|..... -++..+. ..+.+++|.++...-+..+.+.++.. ++.+..++|+.+.......+ .
T Consensus 71 TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~---~-- 145 (236)
T 2pl3_A 71 TGSGKTLAFLVPVLEALYRLQWTSTDGLGVLIISPTRELAYQTFEVLRKVGKNHDFSAGLIIGGKDLKHEAERI---N-- 145 (236)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTCCGGGCCCEEEECSSHHHHHHHHHHHHHHTTTSSCCEEEECCC--CHHHHHHH---T--
T ss_pred CCCcHHHHHHHHHHHHHHhhcccccCCceEEEEeCCHHHHHHHHHHHHHHhCCCCeeEEEEECCCCHHHHHHhC---C--
Confidence 3467766433 3333332 24678999999988877777666654 47888899987755443332 1
Q ss_pred CCceEEEEeccccc------cccCcCccCEEEE
Q psy2046 89 QDLFAFLLSTKAGG------LGINLTAADTVII 115 (138)
Q Consensus 89 ~~~~vll~~~~~~~------~Gl~l~~~~~vi~ 115 (138)
...++++++.... ..+++...+.+|+
T Consensus 146 -~~~iiv~Tp~~l~~~l~~~~~~~~~~~~~lVi 177 (236)
T 2pl3_A 146 -NINILVCTPGRLLQHMDETVSFHATDLQMLVL 177 (236)
T ss_dssp -TCSEEEECHHHHHHHHHHCSSCCCTTCCEEEE
T ss_pred -CCCEEEECHHHHHHHHHhcCCcccccccEEEE
Confidence 2345666655432 1345556666665
No 107
>3sxu_A DNA polymerase III subunit CHI; DNA replication, CHI binds to SSB and PSI, transferase; HET: DNA; 1.85A {Escherichia coli} SCOP: c.128.1.1 PDB: 1em8_A*
Probab=84.91 E-value=2.2 Score=26.97 Aligned_cols=39 Identities=23% Similarity=0.069 Sum_probs=34.6
Q ss_pred CchHHHHHHHHHHhhhCCCeEEEEeccHHHHHHHHHHHh
Q psy2046 22 SGKLKKLDEILPDLKKNGHRVLIFSQFIFVLDILGHYMD 60 (138)
Q Consensus 22 s~K~~~l~~ll~~~~~~~~k~iif~~~~~~~~~l~~~l~ 60 (138)
..+...+++++......|.+++|.|.....++.|-+.|=
T Consensus 22 ~~~~~~aCrL~~ka~~~G~rv~V~~~d~~~a~~LD~~LW 60 (150)
T 3sxu_A 22 SAVEQLVCEIAAERWRSGKRVLIACEDEKQAYRLDEALW 60 (150)
T ss_dssp CHHHHHHHHHHHHHHHTTCCEEEECSSHHHHHHHHHHTT
T ss_pred hHHHHHHHHHHHHHHHcCCeEEEECCCHHHHHHHHHHHh
Confidence 457888999999988999999999999999999998883
No 108
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=84.84 E-value=6.7 Score=26.08 Aligned_cols=90 Identities=11% Similarity=0.070 Sum_probs=55.7
Q ss_pred cCchHHH-HHHHHHHhh-------hCCCeEEEEeccHHHHHHHHHHHhh----cCCeEEEEeCCCChHHHHHHHHHHhcC
Q psy2046 21 ESGKLKK-LDEILPDLK-------KNGHRVLIFSQFIFVLDILGHYMDI----RGWRHLRLDGATQVSSRQELIDEYNRD 88 (138)
Q Consensus 21 ~s~K~~~-l~~ll~~~~-------~~~~k~iif~~~~~~~~~l~~~l~~----~g~~~~~i~g~~~~~~R~~~~~~F~~~ 88 (138)
-++|... +.-++..+. ..+.+++|.+++..-+..+.+.++. .++.+..++|+.+..+....+. .+
T Consensus 76 GsGKT~~~~l~~l~~l~~~~~~~~~~~~~~lil~Pt~~L~~Q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~---~~ 152 (242)
T 3fe2_A 76 GSGKTLSYLLPAIVHINHQPFLERGDGPICLVLAPTRELAQQVQQVAAEYCRACRLKSTCIYGGAPKGPQIRDLE---RG 152 (242)
T ss_dssp TSCHHHHHHHHHHHHHHTSCCCCTTCCCSEEEECSSHHHHHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHH---HC
T ss_pred cCHHHHHHHHHHHHHHHhccccccCCCCEEEEEeCcHHHHHHHHHHHHHHHhhcCceEEEEECCCChHHHHHHhc---CC
Confidence 4677654 444444433 2356799999998776666555544 4889999999998766555443 23
Q ss_pred CCceEEEEeccccc-----cccCcCccCEEEE
Q psy2046 89 QDLFAFLLSTKAGG-----LGINLTAADTVII 115 (138)
Q Consensus 89 ~~~~vll~~~~~~~-----~Gl~l~~~~~vi~ 115 (138)
..++++++.... ..+++.....+|+
T Consensus 153 --~~I~v~Tp~~l~~~l~~~~~~~~~~~~lVi 182 (242)
T 3fe2_A 153 --VEICIATPGRLIDFLECGKTNLRRTTYLVL 182 (242)
T ss_dssp --CSEEEECHHHHHHHHHHTSCCCTTCCEEEE
T ss_pred --CCEEEECHHHHHHHHHcCCCCcccccEEEE
Confidence 345666654432 2345666666665
No 109
>2j48_A Two-component sensor kinase; pseudo-receiver, circadian clock, transferase, response regulator, histidine protein kinase; NMR {Synechococcus elongatus}
Probab=84.47 E-value=3.9 Score=23.05 Aligned_cols=90 Identities=14% Similarity=0.011 Sum_probs=43.1
Q ss_pred CCCeEEEEeccHHHHHHHHHHHhhcCCeEEEEeCCCChHHHHHHHHHHhcC---CCceEEEEeccccccccCcCccCEEE
Q psy2046 38 NGHRVLIFSQFIFVLDILGHYMDIRGWRHLRLDGATQVSSRQELIDEYNRD---QDLFAFLLSTKAGGLGINLTAADTVI 114 (138)
Q Consensus 38 ~~~k~iif~~~~~~~~~l~~~l~~~g~~~~~i~g~~~~~~R~~~~~~F~~~---~~~~vll~~~~~~~~Gl~l~~~~~vi 114 (138)
.+-.+..+.+.......+ .......+.++-.++...-...++..+.. +...+++++...... ....+...-
T Consensus 24 ~g~~v~~~~~~~~~~~~l----~~~~~dlii~d~~~~~~~~~~~~~~l~~~~~~~~~~ii~~~~~~~~~--~~~~~g~~~ 97 (119)
T 2j48_A 24 AGFKVIWLVDGSTALDQL----DLLQPIVILMAWPPPDQSCLLLLQHLREHQADPHPPLVLFLGEPPVD--PLLTAQASA 97 (119)
T ss_dssp TTCEEEEESCHHHHHHHH----HHHCCSEEEEECSTTCCTHHHHHHHHHHTCCCSSCCCEEEESSCCSS--HHHHHHCSE
T ss_pred CCcEEEEecCHHHHHHHH----HhcCCCEEEEecCCCCCCHHHHHHHHHhccccCCCCEEEEeCCCCch--hhhhcCHHH
Confidence 455665555433333333 33455667777665544445555555532 333445554332221 211111122
Q ss_pred EeCCCCCccchhHHHHHHh
Q psy2046 115 IHDVDFNPYNDKQAEDRCH 133 (138)
Q Consensus 115 ~~~~~~~~~~~~Q~~gR~~ 133 (138)
++..|.++....+++.++.
T Consensus 98 ~l~kp~~~~~l~~~l~~~~ 116 (119)
T 2j48_A 98 ILSKPLDPQLLLTTLQGLC 116 (119)
T ss_dssp ECSSCSTTHHHHHHHHTTC
T ss_pred hccCCCCHHHHHHHHHHHh
Confidence 3455777777777766553
No 110
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=84.39 E-value=7.3 Score=26.17 Aligned_cols=91 Identities=15% Similarity=0.134 Sum_probs=55.5
Q ss_pred ccCchHHHH-HHHHHHhhhC--CCeEEEEeccHHHHHHHHHHHhh----cCCeEEEEeCCCChHHHHHHHHHHhcCCCce
Q psy2046 20 VESGKLKKL-DEILPDLKKN--GHRVLIFSQFIFVLDILGHYMDI----RGWRHLRLDGATQVSSRQELIDEYNRDQDLF 92 (138)
Q Consensus 20 ~~s~K~~~l-~~ll~~~~~~--~~k~iif~~~~~~~~~l~~~l~~----~g~~~~~i~g~~~~~~R~~~~~~F~~~~~~~ 92 (138)
.-++|.... .-++..+... +.+++|.+++..-+..+.+.++. .++.+..++|+.+..+....+. . ...
T Consensus 89 TGsGKT~~~~~~il~~l~~~~~~~~~lil~Ptr~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~---~--~~~ 163 (249)
T 3ber_A 89 TGSGKTGAFALPILNALLETPQRLFALVLTPTRELAFQISEQFEALGSSIGVQSAVIVGGIDSMSQSLALA---K--KPH 163 (249)
T ss_dssp TTSCHHHHHHHHHHHHHHHSCCSSCEEEECSSHHHHHHHHHHHHHHHGGGTCCEEEECTTSCHHHHHHHHH---T--CCS
T ss_pred CCCCchhHhHHHHHHHHhcCCCCceEEEEeCCHHHHHHHHHHHHHHhccCCeeEEEEECCCChHHHHHHhc---C--CCC
Confidence 346786653 3444444333 35799999998877766665554 3888999999987654443332 2 334
Q ss_pred EEEEecccc------ccccCcCccCEEEE
Q psy2046 93 AFLLSTKAG------GLGINLTAADTVII 115 (138)
Q Consensus 93 vll~~~~~~------~~Gl~l~~~~~vi~ 115 (138)
++++++... ..++++...+.+|+
T Consensus 164 I~v~Tp~~l~~~l~~~~~~~l~~~~~lVi 192 (249)
T 3ber_A 164 IIIATPGRLIDHLENTKGFNLRALKYLVM 192 (249)
T ss_dssp EEEECHHHHHHHHHHSTTCCCTTCCEEEE
T ss_pred EEEECHHHHHHHHHcCCCcCccccCEEEE
Confidence 566665443 13456666666666
No 111
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=84.11 E-value=5.7 Score=25.90 Aligned_cols=90 Identities=9% Similarity=-0.027 Sum_probs=49.3
Q ss_pred ccCchHHH-HHHHHHHhhh--CCCeEEEEeccHHHHHHHHHHHhh----cCCeEEEEeCCCChHHHHHHHHHHhcCCCce
Q psy2046 20 VESGKLKK-LDEILPDLKK--NGHRVLIFSQFIFVLDILGHYMDI----RGWRHLRLDGATQVSSRQELIDEYNRDQDLF 92 (138)
Q Consensus 20 ~~s~K~~~-l~~ll~~~~~--~~~k~iif~~~~~~~~~l~~~l~~----~g~~~~~i~g~~~~~~R~~~~~~F~~~~~~~ 92 (138)
.-++|... +.-++..+.. .+.+++|.+++..-...+.+.+.. .++.+..++|+.+..+..+. +.. ..
T Consensus 60 TGsGKT~~~~~~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~---~~~---~~ 133 (224)
T 1qde_A 60 SGTGKTGTFSIAALQRIDTSVKAPQALMLAPTRELALQIQKVVMALAFHMDIKVHACIGGTSFVEDAEG---LRD---AQ 133 (224)
T ss_dssp TTSSHHHHHHHHHHHHCCTTCCSCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEEEECC-------------CTT---CS
T ss_pred CCCcHHHHHHHHHHHHHhccCCCceEEEEECCHHHHHHHHHHHHHHhcccCceEEEEeCCcchHHHHhc---CCC---CC
Confidence 34678765 4555554432 346899999998877766666554 36788889998765443322 222 44
Q ss_pred EEEEecccc-----ccccCcCccCEEEE
Q psy2046 93 AFLLSTKAG-----GLGINLTAADTVII 115 (138)
Q Consensus 93 vll~~~~~~-----~~Gl~l~~~~~vi~ 115 (138)
++++++... ...+++...+.+|+
T Consensus 134 iiv~Tp~~l~~~~~~~~~~~~~~~~iVi 161 (224)
T 1qde_A 134 IVVGTPGRVFDNIQRRRFRTDKIKMFIL 161 (224)
T ss_dssp EEEECHHHHHHHHHTTSSCCTTCCEEEE
T ss_pred EEEECHHHHHHHHHhCCcchhhCcEEEE
Confidence 566665543 22344555666665
No 112
>3foj_A Uncharacterized protein; protein SSP1007, structural genomics, PSI-2, protein structure initiative; 1.60A {Staphylococcus saprophyticus subsp}
Probab=82.39 E-value=1.8 Score=24.82 Aligned_cols=37 Identities=11% Similarity=0.171 Sum_probs=30.8
Q ss_pred hCCCeEEEEeccHHHHHHHHHHHhhcCCeEEEEeCCC
Q psy2046 37 KNGHRVLIFSQFIFVLDILGHYMDIRGWRHLRLDGAT 73 (138)
Q Consensus 37 ~~~~k~iif~~~~~~~~~l~~~l~~~g~~~~~i~g~~ 73 (138)
..++++++||..-.........|...|+++..+.|+.
T Consensus 54 ~~~~~ivvyC~~g~rs~~a~~~L~~~G~~v~~l~GG~ 90 (100)
T 3foj_A 54 NDNETYYIICKAGGRSAQVVQYLEQNGVNAVNVEGGM 90 (100)
T ss_dssp CTTSEEEEECSSSHHHHHHHHHHHTTTCEEEEETTHH
T ss_pred CCCCcEEEEcCCCchHHHHHHHHHHCCCCEEEecccH
Confidence 3467899999988778888899999999888888865
No 113
>3hix_A ALR3790 protein; rhodanese, rhodanese_3, Q8YQN0, Q8YQN0_anAsp, NSR437I, NESG, structural genomics, PSI-2, protein structure initiative; 1.92A {Anabaena SP} PDB: 3k9r_A
Probab=81.34 E-value=2.8 Score=24.33 Aligned_cols=37 Identities=8% Similarity=0.102 Sum_probs=30.1
Q ss_pred hCCCeEEEEeccHHHHHHHHHHHhhcCCe-EEEEeCCC
Q psy2046 37 KNGHRVLIFSQFIFVLDILGHYMDIRGWR-HLRLDGAT 73 (138)
Q Consensus 37 ~~~~k~iif~~~~~~~~~l~~~l~~~g~~-~~~i~g~~ 73 (138)
..+..+|+||..-.........|...|+. +..+.|+.
T Consensus 50 ~~~~~ivvyc~~g~rs~~a~~~L~~~G~~~v~~l~GG~ 87 (106)
T 3hix_A 50 EKSRDIYVYGAGDEQTSQAVNLLRSAGFEHVSELKGGL 87 (106)
T ss_dssp CTTSCEEEECSSHHHHHHHHHHHHHTTCSCEEECTTHH
T ss_pred CCCCeEEEEECCCChHHHHHHHHHHcCCcCEEEecCCH
Confidence 45678999999887788888999999996 66777865
No 114
>3iwh_A Rhodanese-like domain protein; alpha-beta-alpha sandwich, structural genomics, C structural genomics of infectious diseases, csgid; 2.00A {Staphylococcus aureus subsp} PDB: 3mzz_A
Probab=81.31 E-value=1.5 Score=25.56 Aligned_cols=37 Identities=11% Similarity=0.140 Sum_probs=30.0
Q ss_pred hCCCeEEEEeccHHHHHHHHHHHhhcCCeEEEEeCCC
Q psy2046 37 KNGHRVLIFSQFIFVLDILGHYMDIRGWRHLRLDGAT 73 (138)
Q Consensus 37 ~~~~k~iif~~~~~~~~~l~~~l~~~g~~~~~i~g~~ 73 (138)
..+++++++|..-.........|.+.|++...+.|++
T Consensus 54 ~~~~~ivv~C~~G~rS~~aa~~L~~~G~~~~~l~GG~ 90 (103)
T 3iwh_A 54 NKNEIYYIVCAGGVRSAKVVEYLEANGIDAVNVEGGM 90 (103)
T ss_dssp CTTSEEEEECSSSSHHHHHHHHHHTTTCEEEEETTHH
T ss_pred cCCCeEEEECCCCHHHHHHHHHHHHcCCCEEEecChH
Confidence 3467899999887777788889999999988888865
No 115
>1t1v_A SH3BGRL3, SH3 domain-binding glutamic acid-rich protein-LIK; glutaredoxin, thioredoxin fold, protein 3D-structure, X-RAY crystallography; 1.60A {Mus musculus} SCOP: c.47.1.14 PDB: 1j0f_A 1sj6_A
Probab=80.73 E-value=5 Score=22.52 Aligned_cols=46 Identities=11% Similarity=0.028 Sum_probs=33.5
Q ss_pred eEEEEeccH-HHH------HHHHHHHhhcCCeEEEEeCCCChHHHHHHHHHHh
Q psy2046 41 RVLIFSQFI-FVL------DILGHYMDIRGWRHLRLDGATQVSSRQELIDEYN 86 (138)
Q Consensus 41 k~iif~~~~-~~~------~~l~~~l~~~g~~~~~i~g~~~~~~R~~~~~~F~ 86 (138)
+++||+... ... .....+|...|+++..++=..++..+....+...
T Consensus 3 ~v~ly~~~~C~~c~~~~~~~~ak~~L~~~~i~~~~~di~~~~~~~~~l~~~~g 55 (93)
T 1t1v_A 3 GLRVYSTSVTGSREIKSQQSEVTRILDGKRIQYQLVDISQDNALRDEMRTLAG 55 (93)
T ss_dssp CEEEEECSSCSCHHHHHHHHHHHHHHHHTTCCCEEEETTSCHHHHHHHHHHTT
T ss_pred CEEEEEcCCCCCchhhHHHHHHHHHHHHCCCceEEEECCCCHHHHHHHHHHhC
Confidence 566776532 234 6888889999999999988877777776666653
No 116
>3eme_A Rhodanese-like domain protein; alpha-beta-alpha sandwich, structural genomics; 2.00A {Staphylococcus aureus subsp} PDB: 3iwh_A 3mzz_A
Probab=80.72 E-value=1.7 Score=25.09 Aligned_cols=37 Identities=11% Similarity=0.140 Sum_probs=30.6
Q ss_pred hCCCeEEEEeccHHHHHHHHHHHhhcCCeEEEEeCCC
Q psy2046 37 KNGHRVLIFSQFIFVLDILGHYMDIRGWRHLRLDGAT 73 (138)
Q Consensus 37 ~~~~k~iif~~~~~~~~~l~~~l~~~g~~~~~i~g~~ 73 (138)
..++++++||..-.........|...|+++..+.|+.
T Consensus 54 ~~~~~iv~yC~~g~rs~~a~~~L~~~G~~v~~l~GG~ 90 (103)
T 3eme_A 54 NKNEIYYIVCAGGVRSAKVVEYLEANGIDAVNVEGGM 90 (103)
T ss_dssp CTTSEEEEECSSSSHHHHHHHHHHTTTCEEEEETTHH
T ss_pred CCCCeEEEECCCChHHHHHHHHHHHCCCCeEEeCCCH
Confidence 3467899999988777888899999999888888865
No 117
>1gmx_A GLPE protein; transferase, rhodanese, sulfurtransferase, glycerol metabolism; 1.1A {Escherichia coli} SCOP: c.46.1.3 PDB: 1gn0_A
Probab=80.57 E-value=2.9 Score=24.22 Aligned_cols=46 Identities=15% Similarity=0.236 Sum_probs=33.6
Q ss_pred HHHHHHHhhhCCCeEEEEeccHHHHHHHHHHHhhcCCe-EEEEeCCCC
Q psy2046 28 LDEILPDLKKNGHRVLIFSQFIFVLDILGHYMDIRGWR-HLRLDGATQ 74 (138)
Q Consensus 28 l~~ll~~~~~~~~k~iif~~~~~~~~~l~~~l~~~g~~-~~~i~g~~~ 74 (138)
+.+.+.. ...++++++||..-.........|...|++ +..+.|+..
T Consensus 48 l~~~~~~-l~~~~~ivvyc~~g~rs~~a~~~L~~~G~~~v~~l~GG~~ 94 (108)
T 1gmx_A 48 LGAFMRD-NDFDTPVMVMCYHGNSSKGAAQYLLQQGYDVVYSIDGGFE 94 (108)
T ss_dssp HHHHHHH-SCTTSCEEEECSSSSHHHHHHHHHHHHTCSSEEEETTHHH
T ss_pred HHHHHHh-cCCCCCEEEEcCCCchHHHHHHHHHHcCCceEEEecCCHH
Confidence 3344444 245678999999877778888889999986 677888753
No 118
>4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens}
Probab=80.49 E-value=1.1 Score=34.86 Aligned_cols=92 Identities=15% Similarity=0.168 Sum_probs=54.4
Q ss_pred ccCchHHHHHHHHHHhhh------CCCeEEEEeccHHHHHHH-HHHHhhcC---CeEEEEeCCCChHHHHHHHHHHhcCC
Q psy2046 20 VESGKLKKLDEILPDLKK------NGHRVLIFSQFIFVLDIL-GHYMDIRG---WRHLRLDGATQVSSRQELIDEYNRDQ 89 (138)
Q Consensus 20 ~~s~K~~~l~~ll~~~~~------~~~k~iif~~~~~~~~~l-~~~l~~~g---~~~~~i~g~~~~~~R~~~~~~F~~~~ 89 (138)
.-++|.-...-.+..... .+.++||.++...-.... .+.|++.+ +.+..++|+.+..++...+. .
T Consensus 31 TGsGKTl~~~~~i~~~l~~~~~~~~~~~vlvl~P~~~L~~Q~~~~~l~~~~~~~~~v~~~~g~~~~~~~~~~~~---~-- 105 (699)
T 4gl2_A 31 TGCGKTRVAVYIAKDHLDKKKKASEPGKVIVLVNKVLLVEQLFRKEFQPFLKKWYRVIGLSGDTQLKISFPEVV---K-- 105 (699)
T ss_dssp TTSCHHHHHHHHHHHHHHHHHHHTCCCCBCCEESCSHHHHHHHHHTHHHHHTTTSCEEEEC----CCCCHHHHH---H--
T ss_pred CCCcHHHHHHHHHHHHHHhccccCCCCeEEEEECCHHHHHHHHHHHHHHHcCcCceEEEEeCCcchhhHHHhhh---c--
Confidence 456786655554443322 126899999988766666 66666543 78999999987655443332 2
Q ss_pred CceEEEEeccccccc-----------cCcCccCEEEEe
Q psy2046 90 DLFAFLLSTKAGGLG-----------INLTAADTVIIH 116 (138)
Q Consensus 90 ~~~vll~~~~~~~~G-----------l~l~~~~~vi~~ 116 (138)
...++++++..+... +.+...+.||+=
T Consensus 106 ~~~Ilv~Tp~~L~~~l~~~~~~~~~~~~~~~~~lvViD 143 (699)
T 4gl2_A 106 SCDIIISTAQILENSLLNLENGEDAGVQLSDFSLIIID 143 (699)
T ss_dssp SCSEEEEEHHHHHHHTC--------CCCGGGCSEEEEE
T ss_pred CCCEEEECHHHHHHHHhccccccccceecccCcEEEEE
Confidence 235677777765533 355677777764
No 119
>1wv9_A Rhodanese homolog TT1651; CDC25, phosphatase, sulfurtransferase, structural genomics, NPPSFA; 2.00A {Thermus thermophilus}
Probab=79.38 E-value=2.2 Score=24.15 Aligned_cols=35 Identities=17% Similarity=0.444 Sum_probs=29.0
Q ss_pred CeEEEEeccHHHHHHHHHHHhhcCCeEEEEeCCCC
Q psy2046 40 HRVLIFSQFIFVLDILGHYMDIRGWRHLRLDGATQ 74 (138)
Q Consensus 40 ~k~iif~~~~~~~~~l~~~l~~~g~~~~~i~g~~~ 74 (138)
+++++||..-.........|...|+++..+.|+..
T Consensus 54 ~~ivvyC~~g~rs~~a~~~L~~~G~~v~~l~GG~~ 88 (94)
T 1wv9_A 54 RPLLLVCEKGLLSQVAALYLEAEGYEAMSLEGGLQ 88 (94)
T ss_dssp SCEEEECSSSHHHHHHHHHHHHHTCCEEEETTGGG
T ss_pred CCEEEEcCCCChHHHHHHHHHHcCCcEEEEcccHH
Confidence 78999999887778888899999998667778754
No 120
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=79.09 E-value=5.9 Score=25.46 Aligned_cols=89 Identities=17% Similarity=0.200 Sum_probs=48.0
Q ss_pred CchHHHHHHHHHHhhh------CCCeEEEEeccHHHHHH-HHHHHhhc---CCeEEEEeCCCChHHHHHHHHHHhcCCCc
Q psy2046 22 SGKLKKLDEILPDLKK------NGHRVLIFSQFIFVLDI-LGHYMDIR---GWRHLRLDGATQVSSRQELIDEYNRDQDL 91 (138)
Q Consensus 22 s~K~~~l~~ll~~~~~------~~~k~iif~~~~~~~~~-l~~~l~~~---g~~~~~i~g~~~~~~R~~~~~~F~~~~~~ 91 (138)
++|-......+..... .+.+++|.++.....+. +.+.+... ++.+..++|+.+...+...+. . ..
T Consensus 59 sGKT~~~~~~~~~~~~~~~~~~~~~~~lil~p~~~L~~q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~---~--~~ 133 (216)
T 3b6e_A 59 SGKTRVAVYIAKDHLDKKKKASEPGKVIVLVNKVLLVEQLFRKEFQPFLKKWYRVIGLSGDTQLKISFPEVV---K--SC 133 (216)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCCCCEEEEESSHHHHHHHHHHTHHHHHTTTSCEEECCC---CCCCHHHHH---H--HC
T ss_pred CCHHHHHHHHHHHHHhhcccccCCCcEEEEECHHHHHHHHHHHHHHHHhccCceEEEEeCCcccchhHHhhc---c--CC
Confidence 4666554444433221 25689999998877665 55555443 678888888765443332222 1 12
Q ss_pred eEEEEeccccc----c-------ccCcCccCEEEE
Q psy2046 92 FAFLLSTKAGG----L-------GINLTAADTVII 115 (138)
Q Consensus 92 ~vll~~~~~~~----~-------Gl~l~~~~~vi~ 115 (138)
.++++++.... . ++.+...+.||+
T Consensus 134 ~i~v~T~~~l~~~~~~~~~~~~~~~~~~~~~~iIi 168 (216)
T 3b6e_A 134 DIIISTAQILENSLLNLENGEDAGVQLSDFSLIII 168 (216)
T ss_dssp SEEEEEHHHHHHHHHC-------CCCGGGCSEEEE
T ss_pred CEEEECHHHHHHHHhccCcccccccchhcccEEEE
Confidence 45666666542 1 244556666665
No 121
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A*
Probab=79.08 E-value=9.4 Score=29.61 Aligned_cols=93 Identities=24% Similarity=0.195 Sum_probs=54.8
Q ss_pred ccCchHHHHHHHHHH-hhhC----CCeEEEEeccHHHHHHHHHHHhhc----CCeEEEEeCCCChHHHHHHHHHHhcCCC
Q psy2046 20 VESGKLKKLDEILPD-LKKN----GHRVLIFSQFIFVLDILGHYMDIR----GWRHLRLDGATQVSSRQELIDEYNRDQD 90 (138)
Q Consensus 20 ~~s~K~~~l~~ll~~-~~~~----~~k~iif~~~~~~~~~l~~~l~~~----g~~~~~i~g~~~~~~R~~~~~~F~~~~~ 90 (138)
.-++|.....-.+.. +... +.++||.++...-.....+.+++. ++.+..++|+.+...+...+. .+
T Consensus 37 TGsGKTl~~~~~i~~~l~~~~~~~~~~~lvl~Pt~~L~~Q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~---~~-- 111 (696)
T 2ykg_A 37 TGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPVYEQNKSVFSKYFERHGYRVTGISGATAENVPVEQIV---EN-- 111 (696)
T ss_dssp TTSSHHHHHHHHHHHHHHHSCTTCCCCEEEECSSHHHHHHHHHHHHHHTTTTTCCEEEECSSSCSSSCHHHHH---HT--
T ss_pred CCchHHHHHHHHHHHHHHhCccCCCCeEEEEECCHHHHHHHHHHHHHHhccCCceEEEEeCCccccccHHHhc---cC--
Confidence 346787655544443 3222 268999999876666555555443 889999999886543322222 22
Q ss_pred ceEEEEecccccc----c-c-CcCccCEEEEeC
Q psy2046 91 LFAFLLSTKAGGL----G-I-NLTAADTVIIHD 117 (138)
Q Consensus 91 ~~vll~~~~~~~~----G-l-~l~~~~~vi~~~ 117 (138)
..++++++...-. + + .+...+.+|+=+
T Consensus 112 ~~Iiv~Tp~~L~~~l~~~~~~~l~~~~~vViDE 144 (696)
T 2ykg_A 112 NDIIILTPQILVNNLKKGTIPSLSIFTLMIFDE 144 (696)
T ss_dssp CSEEEECHHHHHHHHHTTSSCCGGGCSEEEEET
T ss_pred CCEEEECHHHHHHHHhcCcccccccccEEEEeC
Confidence 3457777665432 2 2 455667777743
No 122
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=78.97 E-value=5.9 Score=30.78 Aligned_cols=49 Identities=29% Similarity=0.314 Sum_probs=43.6
Q ss_pred CchHHHHHHHHHHhhhCCCeEEEEeccHHHHHHHHHHHhhcCCeEEEEe
Q psy2046 22 SGKLKKLDEILPDLKKNGHRVLIFSQFIFVLDILGHYMDIRGWRHLRLD 70 (138)
Q Consensus 22 s~K~~~l~~ll~~~~~~~~k~iif~~~~~~~~~l~~~l~~~g~~~~~i~ 70 (138)
++|...+.+++..+...+.++++-+++...+|.+.+.|...+.++..+.
T Consensus 216 TGKT~ti~~~I~~l~~~~~~ILv~a~TN~AvD~i~erL~~~~~~ilRlG 264 (646)
T 4b3f_X 216 TGKTTTVVEIILQAVKQGLKVLCCAPSNIAVDNLVERLALCKQRILRLG 264 (646)
T ss_dssp SCHHHHHHHHHHHHHHTTCCEEEEESSHHHHHHHHHHHHHTTCCEEECS
T ss_pred CCHHHHHHHHHHHHHhCCCeEEEEcCchHHHHHHHHHHHhcCCceEEec
Confidence 5899999999999989999999999999999999999988888776653
No 123
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=78.18 E-value=17 Score=26.48 Aligned_cols=90 Identities=19% Similarity=0.073 Sum_probs=56.3
Q ss_pred cCchHHH-HHHHHHHhhhC-------CCeEEEEeccHHHHHHHHHHHhhc----CCeEEEEeCCCChHHHHHHHHHHhcC
Q psy2046 21 ESGKLKK-LDEILPDLKKN-------GHRVLIFSQFIFVLDILGHYMDIR----GWRHLRLDGATQVSSRQELIDEYNRD 88 (138)
Q Consensus 21 ~s~K~~~-l~~ll~~~~~~-------~~k~iif~~~~~~~~~l~~~l~~~----g~~~~~i~g~~~~~~R~~~~~~F~~~ 88 (138)
-++|... +.-++..+... +.++||.+++++-+..+.+.+++. ++.+..++|+.+..+....+ ..
T Consensus 103 GsGKT~a~~lpil~~l~~~~~~~~~~~~~~lil~PtreLa~Q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l---~~- 178 (434)
T 2db3_A 103 GSGKTAAFLLPILSKLLEDPHELELGRPQVVIVSPTRELAIQIFNEARKFAFESYLKIGIVYGGTSFRHQNECI---TR- 178 (434)
T ss_dssp TSSHHHHHHHHHHHHHHHSCCCCCTTCCSEEEECSSHHHHHHHHHHHHHHTTTSSCCCCEECTTSCHHHHHHHH---TT-
T ss_pred CCCchHHHHHHHHHHHHhcccccccCCccEEEEecCHHHHHHHHHHHHHHhccCCcEEEEEECCCCHHHHHHHh---hc-
Confidence 4678664 44455554432 458999999998877777766653 57788899998865544333 22
Q ss_pred CCceEEEEeccccc-----cccCcCccCEEEE
Q psy2046 89 QDLFAFLLSTKAGG-----LGINLTAADTVII 115 (138)
Q Consensus 89 ~~~~vll~~~~~~~-----~Gl~l~~~~~vi~ 115 (138)
...++++++...- ..+++.....+|+
T Consensus 179 -~~~Ivv~Tp~~l~~~l~~~~~~l~~~~~lVl 209 (434)
T 2db3_A 179 -GCHVVIATPGRLLDFVDRTFITFEDTRFVVL 209 (434)
T ss_dssp -CCSEEEECHHHHHHHHHTTSCCCTTCCEEEE
T ss_pred -CCCEEEEChHHHHHHHHhCCcccccCCeEEE
Confidence 3345666655432 2345666777766
No 124
>4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos}
Probab=78.16 E-value=5.4 Score=32.55 Aligned_cols=91 Identities=14% Similarity=0.096 Sum_probs=50.7
Q ss_pred cCchHHHHHHHHHHhhhC-----CCeEEEEeccHHHHHHHHHHHhh----cCCeEEEEeCCCChHHHHHHHHHHhcCCCc
Q psy2046 21 ESGKLKKLDEILPDLKKN-----GHRVLIFSQFIFVLDILGHYMDI----RGWRHLRLDGATQVSSRQELIDEYNRDQDL 91 (138)
Q Consensus 21 ~s~K~~~l~~ll~~~~~~-----~~k~iif~~~~~~~~~l~~~l~~----~g~~~~~i~g~~~~~~R~~~~~~F~~~~~~ 91 (138)
-++|.....-.+...... +.++||.++....+..+...+++ .++.+..++|+.+...+...+. .+ .
T Consensus 273 GsGKTl~~~~~i~~~l~~~~~~~~~~vLvl~Pt~~L~~Q~~~~~~~~~~~~~~~v~~~~G~~~~~~~~~~~~---~~--~ 347 (936)
T 4a2w_A 273 GSGKTFVSILICEHHFQNMPAGRKAKVVFLATKVPVYEQQKNVFKHHFERQGYSVQGISGENFSNVSVEKVI---ED--S 347 (936)
T ss_dssp TSCHHHHHHHHHHTTTTTCCSSCCCCEEEECSSHHHHHHHHHHHHHHHHTTTCCEEEECCC-----CCHHHH---HH--C
T ss_pred CchHHHHHHHHHHHHHHhccccCCCeEEEEeCCHHHHHHHHHHHHHHhcccCceEEEEECCcchhhHHHHhc---cC--C
Confidence 467776555555443332 66899999988776665555554 4899999999986544322222 12 2
Q ss_pred eEEEEeccccccc-----c-CcCccCEEEEe
Q psy2046 92 FAFLLSTKAGGLG-----I-NLTAADTVIIH 116 (138)
Q Consensus 92 ~vll~~~~~~~~G-----l-~l~~~~~vi~~ 116 (138)
.++++++.....- + .+...+.+|+=
T Consensus 348 ~IvI~Tp~~L~~~l~~~~~~~l~~~~liViD 378 (936)
T 4a2w_A 348 DIIVVTPQILVNSFEDGTLTSLSIFTLMIFD 378 (936)
T ss_dssp SEEEECHHHHHHHHHSSSCCCGGGCSEEEEE
T ss_pred CEEEecHHHHHHHHHcCccccccCCCEEEEE
Confidence 3466665554321 2 34455666663
No 125
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4}
Probab=78.01 E-value=9.8 Score=28.28 Aligned_cols=87 Identities=7% Similarity=-0.043 Sum_probs=54.4
Q ss_pred cCchHHHHHHHHHHhhhCCC-eEEEEeccHHHHHHHHHHHhhcC----CeEEEEeCCCChHHHHHHHHHHhcCCCceEEE
Q psy2046 21 ESGKLKKLDEILPDLKKNGH-RVLIFSQFIFVLDILGHYMDIRG----WRHLRLDGATQVSSRQELIDEYNRDQDLFAFL 95 (138)
Q Consensus 21 ~s~K~~~l~~ll~~~~~~~~-k~iif~~~~~~~~~l~~~l~~~g----~~~~~i~g~~~~~~R~~~~~~F~~~~~~~vll 95 (138)
-++|.......+......+. +++|.++...-+....+.+++.+ ..+..++|+.+..++ .. ....+++
T Consensus 138 GsGKT~~~~~~~~~~~~~~~~~vlvl~P~~~L~~Q~~~~~~~~~~~~~~~v~~~~~~~~~~~~-------~~-~~~~I~i 209 (510)
T 2oca_A 138 SAGRSLIQALLARYYLENYEGKILIIVPTTALTTQMADDFVDYRLFSHAMIKKIGGGASKDDK-------YK-NDAPVVV 209 (510)
T ss_dssp TTTHHHHHHHHHHHHHHHCSSEEEEEESSHHHHHHHHHHHHHTTSSCGGGEEECGGGCCTTGG-------GC-TTCSEEE
T ss_pred CCCHHHHHHHHHHHHHhCCCCeEEEEECcHHHHHHHHHHHHHhhcCCccceEEEecCCccccc-------cc-cCCcEEE
Confidence 46887776666655443444 99999999888777777776642 357888888775543 12 2345677
Q ss_pred Eeccccccc--cCcCccCEEEE
Q psy2046 96 LSTKAGGLG--INLTAADTVII 115 (138)
Q Consensus 96 ~~~~~~~~G--l~l~~~~~vi~ 115 (138)
++....... ..+.....||+
T Consensus 210 ~T~~~l~~~~~~~~~~~~liIi 231 (510)
T 2oca_A 210 GTWQTVVKQPKEWFSQFGMMMN 231 (510)
T ss_dssp EEHHHHTTSCGGGGGGEEEEEE
T ss_pred EeHHHHhhchhhhhhcCCEEEE
Confidence 777665433 22344444444
No 126
>3lte_A Response regulator; structural genomics, PSI, protein structure initiative, NYSG YORK structural genomix research consortium, nysgxrc; 2.00A {Bermanella marisrubri}
Probab=77.91 E-value=8 Score=22.44 Aligned_cols=94 Identities=9% Similarity=-0.064 Sum_probs=43.8
Q ss_pred CCCeEEEEeccHHHHHHHHHHHhhcCCeEEEEeCCCChHHHHHHHHHHhcCC---CceEEEEecccccccc-CcCccCEE
Q psy2046 38 NGHRVLIFSQFIFVLDILGHYMDIRGWRHLRLDGATQVSSRQELIDEYNRDQ---DLFAFLLSTKAGGLGI-NLTAADTV 113 (138)
Q Consensus 38 ~~~k~iif~~~~~~~~~l~~~l~~~g~~~~~i~g~~~~~~R~~~~~~F~~~~---~~~vll~~~~~~~~Gl-~l~~~~~v 113 (138)
.+-.+..+.+..+... .+.......+.++-.++...-.+.++..+... .+.+++++ ......+ ....+...
T Consensus 29 ~g~~v~~~~~~~~a~~----~l~~~~~dlii~d~~l~~~~g~~~~~~l~~~~~~~~~~ii~~~-~~~~~~~~~~~~~g~~ 103 (132)
T 3lte_A 29 DHWQVEIAHNGFDAGI----KLSTFEPAIMTLDLSMPKLDGLDVIRSLRQNKVANQPKILVVS-GLDKAKLQQAVTEGAD 103 (132)
T ss_dssp TTCEEEEESSHHHHHH----HHHHTCCSEEEEESCBTTBCHHHHHHHHHTTTCSSCCEEEEEC-CSCSHHHHHHHHHTCC
T ss_pred CCcEEEEeCCHHHHHH----HHHhcCCCEEEEecCCCCCCHHHHHHHHHhcCccCCCeEEEEe-CCChHHHHHHHHhChH
Confidence 3445554444333322 23344556666766666555556666665432 33333333 2211111 11111112
Q ss_pred EEeCCCCCccchhHHHHHHhhcC
Q psy2046 114 IIHDVDFNPYNDKQAEDRCHRVG 136 (138)
Q Consensus 114 i~~~~~~~~~~~~Q~~gR~~R~G 136 (138)
-++.-|+++....+++.+..+.+
T Consensus 104 ~~l~kP~~~~~l~~~i~~~~~~~ 126 (132)
T 3lte_A 104 DYLEKPFDNDALLDRIHDLVNEG 126 (132)
T ss_dssp EEECSSCCHHHHHHHHHHHHC--
T ss_pred HHhhCCCCHHHHHHHHHHHcCCC
Confidence 23456777777777777765543
No 127
>3dwg_A Cysteine synthase B; sulfur carrier protein complex, beta-grAsp fold, amino-acid biosynthesis; HET: PLP; 1.53A {Mycobacterium tuberculosis} SCOP: c.79.1.0 PDB: 3fgp_A* 3dki_A* 3dwi_A*
Probab=76.60 E-value=17 Score=25.60 Aligned_cols=65 Identities=14% Similarity=0.134 Sum_probs=48.9
Q ss_pred cCchHHHHHHHHHHhhhCCC----eEEEEeccHHHHHHHHHHHhhcCCeEEEEeCCCChHHHHHHHHHH
Q psy2046 21 ESGKLKKLDEILPDLKKNGH----RVLIFSQFIFVLDILGHYMDIRGWRHLRLDGATQVSSRQELIDEY 85 (138)
Q Consensus 21 ~s~K~~~l~~ll~~~~~~~~----k~iif~~~~~~~~~l~~~l~~~g~~~~~i~g~~~~~~R~~~~~~F 85 (138)
-|-|...+..++....+.+. +.||=+..-+....++.+-...|+++..+.....+..+...++.|
T Consensus 50 GSfK~R~a~~~l~~a~~~g~l~~~~~vv~aSsGN~g~alA~aa~~~G~~~~iv~p~~~~~~k~~~~~~~ 118 (325)
T 3dwg_A 50 GSIKDRPAVRMIEQAEADGLLRPGATILEPTSGNTGISLAMAARLKGYRLICVMPENTSVERRQLLELY 118 (325)
T ss_dssp SBTTHHHHHHHHHHHHHTTCCCTTCEEEEECSSHHHHHHHHHHHHHTCEEEEEEESSSCHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHcCCCCCCCEEEEeCCcHHHHHHHHHHHHcCCcEEEEECCCCCHHHHHHHHHC
Confidence 47899888888887766653 455555556777888888888999987776665567778888888
No 128
>1rif_A DAR protein, DNA helicase UVSW; bacteriophage, RECG, SF2, DNA binding protein; HET: DNA; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.23
Probab=75.95 E-value=15 Score=24.97 Aligned_cols=74 Identities=8% Similarity=-0.032 Sum_probs=44.6
Q ss_pred cCchHHHHHHHHHHhhhCC-CeEEEEeccHHHHHHHHHHHhhcCC----eEEEEeCCCChHHHHHHHHHHhcCCCceEEE
Q psy2046 21 ESGKLKKLDEILPDLKKNG-HRVLIFSQFIFVLDILGHYMDIRGW----RHLRLDGATQVSSRQELIDEYNRDQDLFAFL 95 (138)
Q Consensus 21 ~s~K~~~l~~ll~~~~~~~-~k~iif~~~~~~~~~l~~~l~~~g~----~~~~i~g~~~~~~R~~~~~~F~~~~~~~vll 95 (138)
-++|......++......+ .++++.++...-+....+.+++.+. .+..++|+.+..+ .......+++
T Consensus 138 GsGKT~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~l~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~I~v 209 (282)
T 1rif_A 138 SAGRSLIQALLARYYLENYEGKILIIVPTTALTTQMADDFVDYRLFSHAMIKKIGGGASKDD--------KYKNDAPVVV 209 (282)
T ss_dssp TSCHHHHHHHHHHHHHHHCSSEEEEECSSHHHHHHHHHHHHHHTSCCGGGEEECSTTCSSTT--------CCCTTCSEEE
T ss_pred CCCcHHHHHHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHhcccccceEEEEeCCCcchh--------hhccCCcEEE
Confidence 4578776666665544344 4899999988877777777766543 4566777654322 1112334566
Q ss_pred Eeccccc
Q psy2046 96 LSTKAGG 102 (138)
Q Consensus 96 ~~~~~~~ 102 (138)
++++...
T Consensus 210 ~T~~~l~ 216 (282)
T 1rif_A 210 GTWQTVV 216 (282)
T ss_dssp ECHHHHT
T ss_pred EchHHHH
Confidence 6665543
No 129
>2ct6_A SH3 domain-binding glutamic acid-rich-like protein 2; SH3BGRL2,FASH3, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=75.75 E-value=9.6 Score=22.26 Aligned_cols=46 Identities=9% Similarity=0.032 Sum_probs=34.0
Q ss_pred CeEEEEeccH-HHHH------HHHHHHhhcCCeEEEEeCCCChHHHHHHHHHH
Q psy2046 40 HRVLIFSQFI-FVLD------ILGHYMDIRGWRHLRLDGATQVSSRQELIDEY 85 (138)
Q Consensus 40 ~k~iif~~~~-~~~~------~l~~~l~~~g~~~~~i~g~~~~~~R~~~~~~F 85 (138)
.+++||+... .... ....+|...+++|..++=...+..++.+.+.+
T Consensus 8 m~V~vy~~~~C~~C~~~~~~~~ak~~L~~~gi~y~~vdI~~~~~~~~~l~~~~ 60 (111)
T 2ct6_A 8 MVIRVFIASSSGFVAIKKKQQDVVRFLEANKIEFEEVDITMSEEQRQWMYKNV 60 (111)
T ss_dssp CCEEEEECSSCSCHHHHHHHHHHHHHHHHTTCCEEEEETTTCHHHHHHHHHSC
T ss_pred cEEEEEEcCCCCCcccchhHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHh
Confidence 3677876432 3344 68889999999999998888777777776665
No 130
>2fsx_A RV0390, COG0607: rhodanese-related sulfurtransferase; RV0390 BR SAD DATA with FBAR, structural genomics, PSI; 1.80A {Mycobacterium tuberculosis}
Probab=74.94 E-value=4.6 Score=24.91 Aligned_cols=38 Identities=5% Similarity=-0.118 Sum_probs=29.1
Q ss_pred hCCCeEEEEeccHHHHHHHHHHHhhcCCe-EEEEeCCCC
Q psy2046 37 KNGHRVLIFSQFIFVLDILGHYMDIRGWR-HLRLDGATQ 74 (138)
Q Consensus 37 ~~~~k~iif~~~~~~~~~l~~~l~~~g~~-~~~i~g~~~ 74 (138)
..+.++|+||..-.........|...|++ +..+.|+..
T Consensus 78 ~~~~~ivvyC~~G~rS~~aa~~L~~~G~~~v~~l~GG~~ 116 (148)
T 2fsx_A 78 QHERPVIFLCRSGNRSIGAAEVATEAGITPAYNVLDGFE 116 (148)
T ss_dssp ---CCEEEECSSSSTHHHHHHHHHHTTCCSEEEETTTTT
T ss_pred CCCCEEEEEcCCChhHHHHHHHHHHcCCcceEEEcCChh
Confidence 44678999998876667888889999995 788889874
No 131
>2rkb_A Serine dehydratase-like; PLP bound enzyme, enzyme found in human cells, lyase, pyridoxal phosphate; HET: PLP; 2.80A {Homo sapiens}
Probab=74.84 E-value=19 Score=25.19 Aligned_cols=65 Identities=12% Similarity=-0.046 Sum_probs=49.3
Q ss_pred cCchHHHHHHHHHHhhhCCCeEEEEeccHHHHHHHHHHHhhcCCeEEEEeCCCChHHHHHHHHHH
Q psy2046 21 ESGKLKKLDEILPDLKKNGHRVLIFSQFIFVLDILGHYMDIRGWRHLRLDGATQVSSRQELIDEY 85 (138)
Q Consensus 21 ~s~K~~~l~~ll~~~~~~~~k~iif~~~~~~~~~l~~~l~~~g~~~~~i~g~~~~~~R~~~~~~F 85 (138)
-|-|...+..++.+..+.+.+.||=+..-+....++.+-...|+++..+........+.+.++.|
T Consensus 35 gS~K~R~a~~~l~~a~~~g~~~vv~~ssGN~g~alA~~a~~~G~~~~i~~p~~~~~~k~~~~~~~ 99 (318)
T 2rkb_A 35 GSFKIRGIGHFCQEMAKKGCRHLVCSSGGNAGIAAAYAARKLGIPATIVLPESTSLQVVQRLQGE 99 (318)
T ss_dssp SBTTHHHHHHHHHHHHHTTCCEEEECCCSHHHHHHHHHHHHHTCCEEEEECTTCCHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHHHcCCCEEEEECCchHHHHHHHHHHHcCCCEEEEECCCCcHHHHHHHHhc
Confidence 57799988888887766666666655566778888888888999987776655556777788887
No 132
>3a10_A Response regulator; phosphoacceptor, signaling protein; HET: MSE PG4; 1.63A {Thermotoga maritima} PDB: 3a0r_B* 3a0u_A*
Probab=74.76 E-value=9.2 Score=21.56 Aligned_cols=89 Identities=18% Similarity=0.050 Sum_probs=44.4
Q ss_pred CCCeEEEEeccHHHHHHHHHHHhhcCCeEEEEeCCCChHHHHHHHHHHhc-CCCceEEEEeccccccccCcC--ccCEEE
Q psy2046 38 NGHRVLIFSQFIFVLDILGHYMDIRGWRHLRLDGATQVSSRQELIDEYNR-DQDLFAFLLSTKAGGLGINLT--AADTVI 114 (138)
Q Consensus 38 ~~~k~iif~~~~~~~~~l~~~l~~~g~~~~~i~g~~~~~~R~~~~~~F~~-~~~~~vll~~~~~~~~Gl~l~--~~~~vi 114 (138)
.+-.+..+.+..+.+. .+.......+.++-.++...-.+.++..+. .+...+++++...... .... ++..
T Consensus 24 ~~~~v~~~~~~~~a~~----~~~~~~~dlvl~D~~l~~~~g~~~~~~l~~~~~~~~ii~~s~~~~~~-~~~~~~g~~~-- 96 (116)
T 3a10_A 24 EGYEIDTAENGEEALK----KFFSGNYDLVILDIEMPGISGLEVAGEIRKKKKDAKIILLTAYSHYR-SDMSSWAADE-- 96 (116)
T ss_dssp TTCEEEEESSHHHHHH----HHHHSCCSEEEECSCCSSSCHHHHHHHHHHHCTTCCEEEEESCGGGG-GCGGGGGSSE--
T ss_pred CCCEEEEeCCHHHHHH----HHhcCCCCEEEEECCCCCCCHHHHHHHHHccCCCCeEEEEECCcchH-HHHHhccccc--
Confidence 3555554443333333 333445667777766654444455555542 2344455555432211 2221 2332
Q ss_pred EeCCCCCccchhHHHHHHh
Q psy2046 115 IHDVDFNPYNDKQAEDRCH 133 (138)
Q Consensus 115 ~~~~~~~~~~~~Q~~gR~~ 133 (138)
++.-|+++....+++.++.
T Consensus 97 ~l~Kp~~~~~l~~~i~~~~ 115 (116)
T 3a10_A 97 YVVKSFNFDELKEKVKKLL 115 (116)
T ss_dssp EEECCSSTHHHHHHHHHHT
T ss_pred eEECCCCHHHHHHHHHHHh
Confidence 3356778888877777654
No 133
>3nhv_A BH2092 protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 2.50A {Bacillus halodurans} PDB: 3o3w_A
Probab=74.71 E-value=4.2 Score=25.12 Aligned_cols=37 Identities=11% Similarity=0.021 Sum_probs=30.0
Q ss_pred CCCeEEEEeccH--HHHHHHHHHHhhcCCeEEEEeCCCC
Q psy2046 38 NGHRVLIFSQFI--FVLDILGHYMDIRGWRHLRLDGATQ 74 (138)
Q Consensus 38 ~~~k~iif~~~~--~~~~~l~~~l~~~g~~~~~i~g~~~ 74 (138)
.+.++|+||..- .........|+..|+++..+.|+..
T Consensus 71 ~~~~ivvyC~~g~~~rs~~aa~~L~~~G~~v~~l~GG~~ 109 (144)
T 3nhv_A 71 KEKVIITYCWGPACNGATKAAAKFAQLGFRVKELIGGIE 109 (144)
T ss_dssp TTSEEEEECSCTTCCHHHHHHHHHHHTTCEEEEEESHHH
T ss_pred CCCeEEEEECCCCccHHHHHHHHHHHCCCeEEEeCCcHH
Confidence 466899999876 4667788899999999888999763
No 134
>2hhg_A Hypothetical protein RPA3614; MCSG, structural genomics, rohopseudom palustris, PSI-2, protein structure initiative; 1.20A {Rhodopseudomonas palustris}
Probab=74.68 E-value=3.9 Score=24.79 Aligned_cols=38 Identities=5% Similarity=0.112 Sum_probs=30.9
Q ss_pred hCCCeEEEEeccHHHHHHHHHHHhhcCCe-EEEEeCCCC
Q psy2046 37 KNGHRVLIFSQFIFVLDILGHYMDIRGWR-HLRLDGATQ 74 (138)
Q Consensus 37 ~~~~k~iif~~~~~~~~~l~~~l~~~g~~-~~~i~g~~~ 74 (138)
..+.++|+||..-.........|...|+. +..+.|+..
T Consensus 84 ~~~~~ivvyC~~G~rs~~a~~~L~~~G~~~v~~l~GG~~ 122 (139)
T 2hhg_A 84 QEDKKFVFYCAGGLRSALAAKTAQDMGLKPVAHIEGGFG 122 (139)
T ss_dssp GSSSEEEEECSSSHHHHHHHHHHHHHTCCSEEEETTHHH
T ss_pred CCCCeEEEECCCChHHHHHHHHHHHcCCCCeEEecCCHH
Confidence 45678999999877777888899999996 778888753
No 135
>2k0z_A Uncharacterized protein HP1203; A/B domain, structural genomics, unknown function, PSI-2, PR structure initiative; NMR {Helicobacter pylori}
Probab=74.33 E-value=4.6 Score=23.53 Aligned_cols=38 Identities=16% Similarity=0.109 Sum_probs=30.5
Q ss_pred hCCCeEEEEeccHHHHHHHHHHHhhcCCeEEEEeCCCC
Q psy2046 37 KNGHRVLIFSQFIFVLDILGHYMDIRGWRHLRLDGATQ 74 (138)
Q Consensus 37 ~~~~k~iif~~~~~~~~~l~~~l~~~g~~~~~i~g~~~ 74 (138)
..+.++|+||..-.........|...|+....+.|+..
T Consensus 54 ~~~~~ivvyC~~G~rs~~aa~~L~~~G~~~~~l~GG~~ 91 (110)
T 2k0z_A 54 HKDKKVLLHCRAGRRALDAAKSMHELGYTPYYLEGNVY 91 (110)
T ss_dssp CSSSCEEEECSSSHHHHHHHHHHHHTTCCCEEEESCGG
T ss_pred CCCCEEEEEeCCCchHHHHHHHHHHCCCCEEEecCCHH
Confidence 45678999998887777888899999986577888864
No 136
>1tq1_A AT5G66040, senescence-associated family protein; CESG, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana} SCOP: c.46.1.3
Probab=74.12 E-value=3.9 Score=24.62 Aligned_cols=38 Identities=8% Similarity=-0.117 Sum_probs=30.9
Q ss_pred hCCCeEEEEeccHHHHHHHHHHHhhcCCe-EEEEeCCCC
Q psy2046 37 KNGHRVLIFSQFIFVLDILGHYMDIRGWR-HLRLDGATQ 74 (138)
Q Consensus 37 ~~~~k~iif~~~~~~~~~l~~~l~~~g~~-~~~i~g~~~ 74 (138)
..+.++|+||..-.........|...|++ +..+.|+..
T Consensus 80 ~~~~~ivvyC~~G~rs~~aa~~L~~~G~~~v~~l~GG~~ 118 (129)
T 1tq1_A 80 GQSDNIIVGCQSGGRSIKATTDLLHAGFTGVKDIVGGYS 118 (129)
T ss_dssp CTTSSEEEEESSCSHHHHHHHHHHHHHCCSEEEEECCHH
T ss_pred CCCCeEEEECCCCcHHHHHHHHHHHcCCCCeEEeCCcHH
Confidence 45678999999877777888889989986 778889864
No 137
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19
Probab=73.67 E-value=7.2 Score=25.39 Aligned_cols=90 Identities=13% Similarity=0.077 Sum_probs=50.6
Q ss_pred cCchHHH-HHHHHHHhhh--CCCeEEEEeccHHHHHHHHHHHhhc--------CCeEEEEeCCCChHHHHHHHHHHhcCC
Q psy2046 21 ESGKLKK-LDEILPDLKK--NGHRVLIFSQFIFVLDILGHYMDIR--------GWRHLRLDGATQVSSRQELIDEYNRDQ 89 (138)
Q Consensus 21 ~s~K~~~-l~~ll~~~~~--~~~k~iif~~~~~~~~~l~~~l~~~--------g~~~~~i~g~~~~~~R~~~~~~F~~~~ 89 (138)
-++|... +.-++..+.. .+.+++|.+++..-+..+.+.+++. ++.+..++|+.+..+. .+.+..
T Consensus 51 GsGKT~~~~~~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~---~~~~~~-- 125 (219)
T 1q0u_A 51 GTGKTHAYLLPIMEKIKPERAEVQAVITAPTRELATQIYHETLKITKFCPKDRMIVARCLIGGTDKQKA---LEKLNV-- 125 (219)
T ss_dssp SHHHHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHHHHTTSCGGGCCCEEEECCCSHHHHT---TCCCSS--
T ss_pred CChHHHHHHHHHHHHHHhCcCCceEEEEcCcHHHHHHHHHHHHHHhhhcccccceEEEEEeCCCCHHHH---HHHcCC--
Confidence 3567654 3334444332 2468999999988777666665543 6778888888753322 112211
Q ss_pred CceEEEEeccccc-----cccCcCccCEEEE
Q psy2046 90 DLFAFLLSTKAGG-----LGINLTAADTVII 115 (138)
Q Consensus 90 ~~~vll~~~~~~~-----~Gl~l~~~~~vi~ 115 (138)
...++++++.... ..+++...+.+|+
T Consensus 126 ~~~Iiv~Tp~~l~~~l~~~~~~~~~~~~lVi 156 (219)
T 1q0u_A 126 QPHIVIGTPGRINDFIREQALDVHTAHILVV 156 (219)
T ss_dssp CCSEEEECHHHHHHHHHTTCCCGGGCCEEEE
T ss_pred CCCEEEeCHHHHHHHHHcCCCCcCcceEEEE
Confidence 3345666654322 1344556666655
No 138
>3ilm_A ALR3790 protein; rhodanese-like, NSR437H, NESG, structural genomics, protein structure initiative, northeast structural genomics consortium; 2.26A {Nostoc SP} PDB: 2kl3_A
Probab=73.24 E-value=5.3 Score=24.54 Aligned_cols=37 Identities=8% Similarity=0.102 Sum_probs=29.8
Q ss_pred hCCCeEEEEeccHHHHHHHHHHHhhcCCe-EEEEeCCC
Q psy2046 37 KNGHRVLIFSQFIFVLDILGHYMDIRGWR-HLRLDGAT 73 (138)
Q Consensus 37 ~~~~k~iif~~~~~~~~~l~~~l~~~g~~-~~~i~g~~ 73 (138)
..+..+|+||..-.........|...|+. +..+.|+.
T Consensus 54 ~~~~~ivvyC~~g~rs~~aa~~L~~~G~~~v~~l~GG~ 91 (141)
T 3ilm_A 54 EKSRDIYVYGAGDEQTSQAVNLLRSAGFEHVSELKGGL 91 (141)
T ss_dssp CTTSEEEEECSSHHHHHHHHHHHHHTTCCSEEECTTHH
T ss_pred CCCCeEEEEECCChHHHHHHHHHHHcCCCCEEEecCHH
Confidence 45678999999877778888999999986 66777865
No 139
>3flh_A Uncharacterized protein LP_1913; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.00A {Lactobacillus plantarum} PDB: 3fnj_A 3i3u_A
Probab=72.68 E-value=2.6 Score=25.20 Aligned_cols=37 Identities=11% Similarity=0.004 Sum_probs=29.4
Q ss_pred hCCCeEEEEeccHHH--HHHHHHHHhhcCCeEEEEeCCC
Q psy2046 37 KNGHRVLIFSQFIFV--LDILGHYMDIRGWRHLRLDGAT 73 (138)
Q Consensus 37 ~~~~k~iif~~~~~~--~~~l~~~l~~~g~~~~~i~g~~ 73 (138)
..+.++|+||..-.. .......|...|+++..+.|+.
T Consensus 69 ~~~~~ivvyC~~g~r~~s~~a~~~L~~~G~~v~~l~GG~ 107 (124)
T 3flh_A 69 DPAKTYVVYDWTGGTTLGKTALLVLLSAGFEAYELAGAL 107 (124)
T ss_dssp CTTSEEEEECSSSSCSHHHHHHHHHHHHTCEEEEETTHH
T ss_pred CCCCeEEEEeCCCCchHHHHHHHHHHHcCCeEEEeCCcH
Confidence 346689999988665 6778888999999977788865
No 140
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=71.93 E-value=16 Score=23.19 Aligned_cols=91 Identities=13% Similarity=0.092 Sum_probs=55.3
Q ss_pred ccCchHHH-HHHHHHHhh-----hCCCeEEEEeccHHHHHHHHHHHhhc--CCeEEEEeCCCChHHHHHHHHHHhcCCCc
Q psy2046 20 VESGKLKK-LDEILPDLK-----KNGHRVLIFSQFIFVLDILGHYMDIR--GWRHLRLDGATQVSSRQELIDEYNRDQDL 91 (138)
Q Consensus 20 ~~s~K~~~-l~~ll~~~~-----~~~~k~iif~~~~~~~~~l~~~l~~~--g~~~~~i~g~~~~~~R~~~~~~F~~~~~~ 91 (138)
.-++|... +.-++..+. ..+.+++|.++.......+.+.++.. ++.+..++|+.+.....+.+. .+ .
T Consensus 47 TGsGKT~~~~~~~~~~l~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~--~ 121 (207)
T 2gxq_A 47 TGTGKTLAFALPIAERLAPSQERGRKPRALVLTPTRELALQVASELTAVAPHLKVVAVYGGTGYGKQKEALL---RG--A 121 (207)
T ss_dssp TTSCHHHHHHHHHHHHCCCCCCTTCCCSEEEECSSHHHHHHHHHHHHHHCTTSCEEEECSSSCSHHHHHHHH---HC--C
T ss_pred CCChHHHHHHHHHHHHHhhccccCCCCcEEEEECCHHHHHHHHHHHHHHhhcceEEEEECCCChHHHHHHhh---CC--C
Confidence 34678765 334444432 24568999999988888888877765 467888999887654443332 22 2
Q ss_pred eEEEEeccccc-----cccCcCccCEEEE
Q psy2046 92 FAFLLSTKAGG-----LGINLTAADTVII 115 (138)
Q Consensus 92 ~vll~~~~~~~-----~Gl~l~~~~~vi~ 115 (138)
.+++.++.... ..+++...+.+|+
T Consensus 122 ~i~v~T~~~l~~~~~~~~~~~~~~~~iVi 150 (207)
T 2gxq_A 122 DAVVATPGRALDYLRQGVLDLSRVEVAVL 150 (207)
T ss_dssp SEEEECHHHHHHHHHHTSSCCTTCSEEEE
T ss_pred CEEEECHHHHHHHHHcCCcchhhceEEEE
Confidence 34665553321 2344556666665
No 141
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=71.09 E-value=23 Score=24.54 Aligned_cols=90 Identities=13% Similarity=0.127 Sum_probs=54.5
Q ss_pred ccCchHHHHHHHHHHhhh--CCCeEEEEeccHHHHHHHHHHHhh----cCCeEEEEeCCCChHHHHHHHHHHhcCCCceE
Q psy2046 20 VESGKLKKLDEILPDLKK--NGHRVLIFSQFIFVLDILGHYMDI----RGWRHLRLDGATQVSSRQELIDEYNRDQDLFA 93 (138)
Q Consensus 20 ~~s~K~~~l~~ll~~~~~--~~~k~iif~~~~~~~~~l~~~l~~----~g~~~~~i~g~~~~~~R~~~~~~F~~~~~~~v 93 (138)
.-++|.....-.+..... .+.+++|.++.....+.+.+.+.. .++.+..++|+.+..+....+. ...+
T Consensus 53 TGsGKT~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~------~~~i 126 (367)
T 1hv8_A 53 TGSGKTASFAIPLIELVNENNGIEAIILTPTRELAIQVADEIESLKGNKNLKIAKIYGGKAIYPQIKALK------NANI 126 (367)
T ss_dssp SSSSHHHHHHHHHHHHSCSSSSCCEEEECSCHHHHHHHHHHHHHHHCSSCCCEEEECTTSCHHHHHHHHH------TCSE
T ss_pred CCChHHHHHHHHHHHHhcccCCCcEEEEcCCHHHHHHHHHHHHHHhCCCCceEEEEECCcchHHHHhhcC------CCCE
Confidence 456887665544443322 367899999998877776666655 3677888999887554433332 2244
Q ss_pred EEEeccccc-----cccCcCccCEEEE
Q psy2046 94 FLLSTKAGG-----LGINLTAADTVII 115 (138)
Q Consensus 94 ll~~~~~~~-----~Gl~l~~~~~vi~ 115 (138)
+++++.... ..+++...+.+|+
T Consensus 127 iv~T~~~l~~~~~~~~~~~~~~~~iIi 153 (367)
T 1hv8_A 127 VVGTPGRILDHINRGTLNLKNVKYFIL 153 (367)
T ss_dssp EEECHHHHHHHHHTTCSCTTSCCEEEE
T ss_pred EEecHHHHHHHHHcCCcccccCCEEEE
Confidence 666655432 1234555566655
No 142
>1p5j_A L-serine dehydratase; lyase; HET: PLP; 2.50A {Homo sapiens} SCOP: c.79.1.1 PDB: 1pwh_A* 1pwe_A*
Probab=70.13 E-value=28 Score=25.11 Aligned_cols=66 Identities=12% Similarity=-0.070 Sum_probs=50.3
Q ss_pred ccCchHHHHHHHHHHhhhCCCeEEEEeccHHHHHHHHHHHhhcCCeEEEEeCCCChHHHHHHHHHH
Q psy2046 20 VESGKLKKLDEILPDLKKNGHRVLIFSQFIFVLDILGHYMDIRGWRHLRLDGATQVSSRQELIDEY 85 (138)
Q Consensus 20 ~~s~K~~~l~~ll~~~~~~~~k~iif~~~~~~~~~l~~~l~~~g~~~~~i~g~~~~~~R~~~~~~F 85 (138)
.-|-|...+..++.+..+.+.+.||=+..-+....++.+-...|+++..+........+...++.|
T Consensus 73 tGSfKdRga~~~l~~a~~~g~~~vv~aSsGN~g~alA~aa~~~G~~~~iv~p~~~~~~k~~~~~~~ 138 (372)
T 1p5j_A 73 SGSFKIRGIGHFCKRWAKQGCAHFVCSSAGNAGMAAAYAARQLGVPATIVVPGTTPALTIERLKNE 138 (372)
T ss_dssp GGBTTHHHHHHHHHHHHHTTCCEEEECCSSHHHHHHHHHHHHHTCCEEEEECTTCCHHHHHHHHHT
T ss_pred CCChHHHHHHHHHHHHHHcCCCEEEEeCCCHHHHHHHHHHHHcCCcEEEEECCCCCHHHHHHHHhc
Confidence 467899988888887666666666666566777888888888899988777665567777888887
No 143
>1j0a_A 1-aminocyclopropane-1-carboxylate deaminase; PLP dependent, lyase; HET: PLP; 2.50A {Pyrococcus horikoshii} SCOP: c.79.1.1 PDB: 1j0b_A*
Probab=70.11 E-value=25 Score=24.63 Aligned_cols=65 Identities=17% Similarity=0.109 Sum_probs=48.0
Q ss_pred cCchHHHHHHHHHHhhhCCCeEEEEe--ccHHHHHHHHHHHhhcCCeEEEEeCCCC-hHHHHHHHHHH
Q psy2046 21 ESGKLKKLDEILPDLKKNGHRVLIFS--QFIFVLDILGHYMDIRGWRHLRLDGATQ-VSSRQELIDEY 85 (138)
Q Consensus 21 ~s~K~~~l~~ll~~~~~~~~k~iif~--~~~~~~~~l~~~l~~~g~~~~~i~g~~~-~~~R~~~~~~F 85 (138)
-+.|...+..++.+..+.+.+.||=+ ..-+....++.+-...|+++..+-.... +..+...++.|
T Consensus 51 gs~K~R~~~~~i~~a~~~G~~~vv~~G~ssGN~g~alA~~a~~~G~~~~iv~p~~~~~~~k~~~~~~~ 118 (325)
T 1j0a_A 51 GGNKIRKLEYLLGDALSKGADVVITVGAVHSNHAFVTGLAAKKLGLDAILVLRGKEELKGNYLLDKIM 118 (325)
T ss_dssp CSTHHHHHHHHHHHHHHTTCSEEEEECCTTCHHHHHHHHHHHHTTCEEEEEEESCCCSCHHHHHHHHT
T ss_pred CchHHHHHHHHHHHHHHcCCCEEEEcCCcchHHHHHHHHHHHHhCCcEEEEECCCCCCCchHHHHHHC
Confidence 56799999888887777776665543 5567778888888888999766554444 56777788887
No 144
>4h27_A L-serine dehydratase/L-threonine deaminase; PLP dependent typeii, PLP binding, liver, lyase; HET: LLP; 1.30A {Homo sapiens} PDB: 1p5j_A* 1pwh_A* 1pwe_A*
Probab=69.68 E-value=23 Score=25.41 Aligned_cols=66 Identities=12% Similarity=-0.072 Sum_probs=48.2
Q ss_pred ccCchHHHHHHHHHHhhhCCCeEEEEeccHHHHHHHHHHHhhcCCeEEEEeCCCChHHHHHHHHHH
Q psy2046 20 VESGKLKKLDEILPDLKKNGHRVLIFSQFIFVLDILGHYMDIRGWRHLRLDGATQVSSRQELIDEY 85 (138)
Q Consensus 20 ~~s~K~~~l~~ll~~~~~~~~k~iif~~~~~~~~~l~~~l~~~g~~~~~i~g~~~~~~R~~~~~~F 85 (138)
.-|-|...+..++....+.+.+.||=+..-+....++.+-...|+++..+-....+..+.+.++.|
T Consensus 73 tGSfK~Rga~~~i~~a~~~g~~~vv~aSsGN~g~alA~aa~~~G~~~~iv~p~~~~~~k~~~~~~~ 138 (364)
T 4h27_A 73 SGSFKIRGIGHFCKRWAKQGCAHFVCSSSGNAGMAAAYAARQLGVPATIVVPGTTPALTIERLKNE 138 (364)
T ss_dssp TSBTHHHHHHHHHHHHHHTTCCEEEECCSSHHHHHHHHHHHHHTCCEEEEEETTSCHHHHHHHHTT
T ss_pred CCCHHHHHHHHHHHHHHhcCCCEEEEeCCChHHHHHHHHHHHhCCceEEEECCCCCHHHHHHHHHc
Confidence 356798888888887777776666655556777888888888899977665555556677777777
No 145
>3aey_A Threonine synthase; PLP, pyridoxal phosphate, lyase; 1.92A {Thermus thermophilus} PDB: 1uin_A* 1uim_A* 3aex_A* 1v7c_A
Probab=69.44 E-value=27 Score=24.84 Aligned_cols=66 Identities=9% Similarity=-0.086 Sum_probs=49.2
Q ss_pred ccCchHHHHHHHHHHhhhCCCeEEEEeccHHHHHHHHHHHhhcCCeEEEEeCCC-ChHHHHHHHHHH
Q psy2046 20 VESGKLKKLDEILPDLKKNGHRVLIFSQFIFVLDILGHYMDIRGWRHLRLDGAT-QVSSRQELIDEY 85 (138)
Q Consensus 20 ~~s~K~~~l~~ll~~~~~~~~k~iif~~~~~~~~~l~~~l~~~g~~~~~i~g~~-~~~~R~~~~~~F 85 (138)
.-|-|...+..++.+..+.+.+.||=+.+-+....++.+-...|+++..+.... ....+.+.++.|
T Consensus 57 tgS~KdR~a~~~l~~a~~~g~~~vv~~SsGN~g~alA~~a~~~G~~~~iv~p~~~~~~~k~~~~~~~ 123 (351)
T 3aey_A 57 TGSFKDRGMTLAVSKAVEGGAQAVACASTGNTAASAAAYAARAGILAIVVLPAGYVALGKVAQSLVH 123 (351)
T ss_dssp TSBTTHHHHHHHHHHHHHTTCSEEEESCSSHHHHHHHHHHHHHTSEEEEEEETTCSCHHHHHHHHHT
T ss_pred cccHHHHHHHHHHHHHHhcCCCEEEEeCCCHHHHHHHHHHHHcCCCEEEEECCCCCCHHHHHHHHHc
Confidence 456799999888887777777776666667777888888788899977665443 446677788877
No 146
>1ve1_A O-acetylserine sulfhydrylase; PLP, transferase, riken structural genomics/proteomics initi RSGI, structural genomics; HET: PLP; 1.45A {Thermus thermophilus} SCOP: c.79.1.1 PDB: 2eco_A* 2ecq_A* 2efy_A*
Probab=69.36 E-value=25 Score=24.34 Aligned_cols=65 Identities=17% Similarity=0.090 Sum_probs=47.7
Q ss_pred cCchHHHHHHHHHHhhhCCC----e--EEEEeccHHHHHHHHHHHhhcCCeEEEEeCCCChHHHHHHHHHH
Q psy2046 21 ESGKLKKLDEILPDLKKNGH----R--VLIFSQFIFVLDILGHYMDIRGWRHLRLDGATQVSSRQELIDEY 85 (138)
Q Consensus 21 ~s~K~~~l~~ll~~~~~~~~----k--~iif~~~~~~~~~l~~~l~~~g~~~~~i~g~~~~~~R~~~~~~F 85 (138)
-|-|...+..++....+.+. + .||=..+-+....++.+-...|+++..+........+...++.|
T Consensus 37 GSfK~R~a~~~l~~a~~~g~~~~g~~~~vv~assGN~g~a~A~~a~~~G~~~~i~~p~~~~~~k~~~~~~~ 107 (304)
T 1ve1_A 37 GSIKDRPAWYMIKDAEERGILRPGSGQVIVEPTSGNTGIGLAMIAASRGYRLILTMPAQMSEERKRVLKAF 107 (304)
T ss_dssp SBTTHHHHHHHHHHHHHTTSCCTTSCCEEEESCCSHHHHHHHHHHHHHTCEEEEEEETTCCHHHHHHHHHT
T ss_pred CcHHHHHHHHHHHHHHHcCCCCCCCccEEEEeCCcHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHc
Confidence 45799988888887766553 4 55556666777888888888999977765544456777788887
No 147
>2v03_A Cysteine synthase B; pyridoxal phosphate, cysteine biosynthesis, transferase, ENZ kinetics, enzymatic sythesis of novel compounds; HET: LLP CIT; 1.33A {Escherichia coli} PDB: 2bhs_A* 2bht_A* 2jc3_A*
Probab=68.84 E-value=26 Score=24.31 Aligned_cols=73 Identities=19% Similarity=0.153 Sum_probs=49.6
Q ss_pred cCchHHHHHHHHHHhhhCCC----eEEEEeccHHHHHHHHHHHhhcCCeEEEEeCCCChHHHHHHHHHHhcCCCceEEEE
Q psy2046 21 ESGKLKKLDEILPDLKKNGH----RVLIFSQFIFVLDILGHYMDIRGWRHLRLDGATQVSSRQELIDEYNRDQDLFAFLL 96 (138)
Q Consensus 21 ~s~K~~~l~~ll~~~~~~~~----k~iif~~~~~~~~~l~~~l~~~g~~~~~i~g~~~~~~R~~~~~~F~~~~~~~vll~ 96 (138)
-|-|...+..++....+.+. +.||=+..-+....++.+....|+++..+........+.+.++.| |. .|+++
T Consensus 38 GSfK~R~a~~~i~~a~~~g~~~~g~~vv~~ssGN~g~a~A~~a~~~G~~~~iv~p~~~~~~k~~~~~~~--Ga--~v~~~ 113 (303)
T 2v03_A 38 GSVKDRAALSMIVEAEKRGEIKPGDVLIEATSGNTGIALAMIAALKGYRMKLLMPDNMSQERRAAMRAY--GA--ELILV 113 (303)
T ss_dssp SBTHHHHHHHHHHHHHHTTCCCTTCEEEEECSSHHHHHHHHHHHHHTCEEEEEEETTSCHHHHHHHHHT--TC--EEEEE
T ss_pred CCcHHHHHHHHHHHHHHcCCCCCCCEEEEECCcHHHHHHHHHHHHcCCcEEEEECCCCCHHHHHHHHHc--CC--EEEEE
Confidence 45699988888877665553 344444456777788888888999977766554456677788887 32 34555
Q ss_pred e
Q psy2046 97 S 97 (138)
Q Consensus 97 ~ 97 (138)
.
T Consensus 114 ~ 114 (303)
T 2v03_A 114 T 114 (303)
T ss_dssp C
T ss_pred C
Confidence 4
No 148
>3tla_A MCCF; serine protease, hydrolase; 1.20A {Escherichia coli} PDB: 3tle_A* 3tlg_A 3tlb_A* 3tlc_A* 3tlz_A* 3tly_A
Probab=68.35 E-value=31 Score=25.03 Aligned_cols=69 Identities=14% Similarity=0.161 Sum_probs=43.7
Q ss_pred hhCCCeEEEEeccH-------HHHHHHHHHHhhcCCeEEEEe------C--CCChHHHHHHHHHHhcCCCceEEEEeccc
Q psy2046 36 KKNGHRVLIFSQFI-------FVLDILGHYMDIRGWRHLRLD------G--ATQVSSRQELIDEYNRDQDLFAFLLSTKA 100 (138)
Q Consensus 36 ~~~~~k~iif~~~~-------~~~~~l~~~l~~~g~~~~~i~------g--~~~~~~R~~~~~~F~~~~~~~vll~~~~~ 100 (138)
.+.|+++-|.+++. ..++...+.|+..|+.+.... + +-+.++|.+-+.++-.++.++.++. ..
T Consensus 40 Lk~GD~I~ivaPSs~~~~~~~~~~~~~~~~L~~~G~~v~~~~~~~~~~~~~agtd~~Ra~dL~~af~Dp~i~aI~~--~r 117 (371)
T 3tla_A 40 LAVGDTIGFFSSSAPATVTAKNRFFRGVEFLQRKGFKLVSGKLTGKTDFYRSGTIKERAQEFNELVYNPDITCIMS--TI 117 (371)
T ss_dssp CCTTCEEEEECSSCCHHHHTHHHHHHHHHHHHHTTCEEEECTTTTCCBTTBSSCHHHHHHHHHHHHTCTTEEEEEE--SC
T ss_pred CCCcCEEEEEeCCCCccccCHHHHHHHHHHHHhCCCEEEECCchhcccCccCCCHHHHHHHHHHHhhCCCCCEEEE--cc
Confidence 35688999998763 345566778888898865421 1 2356677776665556667776663 34
Q ss_pred cccccC
Q psy2046 101 GGLGIN 106 (138)
Q Consensus 101 ~~~Gl~ 106 (138)
||.|.+
T Consensus 118 GGyga~ 123 (371)
T 3tla_A 118 GGDNSN 123 (371)
T ss_dssp CCSCGG
T ss_pred ccccHH
Confidence 666654
No 149
>1vee_A Proline-rich protein family; hypothetical protein, structural genomics, rhodanese domain, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} PDB: 2dcq_A
Probab=68.26 E-value=7 Score=23.62 Aligned_cols=38 Identities=8% Similarity=0.300 Sum_probs=30.1
Q ss_pred hCCCeEEEEeccHHHHHHHHHHHhhcCCe-EEEEeCCCC
Q psy2046 37 KNGHRVLIFSQFIFVLDILGHYMDIRGWR-HLRLDGATQ 74 (138)
Q Consensus 37 ~~~~k~iif~~~~~~~~~l~~~l~~~g~~-~~~i~g~~~ 74 (138)
..+..+++||..-.........|...|+. +..+.|++.
T Consensus 72 ~~~~~ivv~C~sG~RS~~aa~~L~~~G~~~v~~l~GG~~ 110 (134)
T 1vee_A 72 PENTTLYILDKFDGNSELVAELVALNGFKSAYAIKDGAE 110 (134)
T ss_dssp GGGCEEEEECSSSTTHHHHHHHHHHHTCSEEEECTTTTT
T ss_pred CCCCEEEEEeCCCCcHHHHHHHHHHcCCcceEEecCCcc
Confidence 34678999998876667778888889995 778888874
No 150
>1qxn_A SUD, sulfide dehydrogenase; polysulfide-sulfur transferase, homodimer; NMR {Wolinella succinogenes} SCOP: c.46.1.3
Probab=68.10 E-value=4.5 Score=24.68 Aligned_cols=38 Identities=13% Similarity=0.269 Sum_probs=30.6
Q ss_pred hCCCeEEEEeccHHHHHHHHHHHhhcCCe-EEEEeCCCC
Q psy2046 37 KNGHRVLIFSQFIFVLDILGHYMDIRGWR-HLRLDGATQ 74 (138)
Q Consensus 37 ~~~~k~iif~~~~~~~~~l~~~l~~~g~~-~~~i~g~~~ 74 (138)
..+.++|+||..-.........|...|++ +..+.|+..
T Consensus 80 ~~~~~ivvyC~~G~rS~~aa~~L~~~G~~~v~~l~GG~~ 118 (137)
T 1qxn_A 80 DPEKPVVVFCKTAARAALAGKTLREYGFKTIYNSEGGMD 118 (137)
T ss_dssp CTTSCEEEECCSSSCHHHHHHHHHHHTCSCEEEESSCHH
T ss_pred CCCCeEEEEcCCCcHHHHHHHHHHHcCCcceEEEcCcHH
Confidence 34678999998877777888889999995 778889864
No 151
>2zsj_A Threonine synthase; PLP dependent enzyme, lyase; HET: PLP; 1.80A {Aquifex aeolicus}
Probab=67.87 E-value=27 Score=24.84 Aligned_cols=66 Identities=15% Similarity=0.040 Sum_probs=49.1
Q ss_pred ccCchHHHHHHHHHHhhhCCCeEEEEeccHHHHHHHHHHHhhcCCeEEEEeCCC-ChHHHHHHHHHH
Q psy2046 20 VESGKLKKLDEILPDLKKNGHRVLIFSQFIFVLDILGHYMDIRGWRHLRLDGAT-QVSSRQELIDEY 85 (138)
Q Consensus 20 ~~s~K~~~l~~ll~~~~~~~~k~iif~~~~~~~~~l~~~l~~~g~~~~~i~g~~-~~~~R~~~~~~F 85 (138)
.-|-|...+..++....+.+.+.||=+.+-+....++.+-...|+++..+.... ....+...++.|
T Consensus 59 tGS~KdR~a~~~l~~a~~~g~~~vv~~SsGN~g~alA~~a~~~G~~~~i~~p~~~~~~~k~~~~~~~ 125 (352)
T 2zsj_A 59 TGSFKDRGMTLAISKAVEAGKRAVICASTGNTSASAAAYAARAGLRAYVLLPKGAVAIGKLSQAMIY 125 (352)
T ss_dssp TSBTTHHHHHHHHHHHHHTTCCEEEECCSSHHHHHHHHHHHHHTCEEEEEEEGGGCCHHHHHHHHHT
T ss_pred CccHHHHHHHHHHHHHHhcCCCEEEEeCCchHHHHHHHHHHhcCCcEEEEECCCCCCHHHHHHHHHc
Confidence 457799999888888777776666666666777888888788899977666543 445666777777
No 152
>1y7l_A O-acetylserine sulfhydrylase, O-acetylserine (thiol)-lyase; X-RAY crystallography, sulfhydrylase; HET: LLP; 1.55A {Haemophilus influenzae} SCOP: c.79.1.1 PDB: 3iqg_X* 3iqh_X* 3iqi_X* 1fcj_A* 1oas_A* 1d6s_A*
Probab=67.82 E-value=28 Score=24.26 Aligned_cols=66 Identities=15% Similarity=0.020 Sum_probs=48.2
Q ss_pred ccCchHHHHHHHHHHhhhCCC----eEEEEeccHHHHHHHHHHHhhcCCeEEEEeCCCChHHHHHHHHHH
Q psy2046 20 VESGKLKKLDEILPDLKKNGH----RVLIFSQFIFVLDILGHYMDIRGWRHLRLDGATQVSSRQELIDEY 85 (138)
Q Consensus 20 ~~s~K~~~l~~ll~~~~~~~~----k~iif~~~~~~~~~l~~~l~~~g~~~~~i~g~~~~~~R~~~~~~F 85 (138)
.-|-|...+..++....+.+. +.||=+..-+....++.+-...|+++..+........+...++.|
T Consensus 38 tGSfK~R~a~~~i~~a~~~g~~~~~~~vv~~ssGN~g~a~A~~a~~~G~~~~iv~p~~~~~~k~~~~~~~ 107 (316)
T 1y7l_A 38 SYSVKCRIGANMVWQAEKDGTLTKGKEIVDATSGNTGIALAYVAAARGYKITLTMPETMSLERKRLLCGL 107 (316)
T ss_dssp GGBTHHHHHHHHHHHHHHTTSSCTTCEEEESCCSHHHHHHHHHHHHHTCCEEEEEETTSCHHHHHHHHHT
T ss_pred CCChHHHHHHHHHHHHHHcCCCCCCCEEEEeCCcHHHHHHHHHHHHcCCcEEEEECCCCCHHHHHHHHHc
Confidence 345699988888887766554 455555566777888888888999977666554556777888887
No 153
>3i42_A Response regulator receiver domain protein (CHEY- like); structural genomics, PSI-2, protein structure initiative; 2.15A {Methylobacillus flagellatus KT} SCOP: c.23.1.0
Probab=67.74 E-value=15 Score=21.06 Aligned_cols=92 Identities=12% Similarity=-0.043 Sum_probs=49.6
Q ss_pred CCeEEEEeccHHHHHHHHHHHhhcCCeEEEEeCCCChHHHHHHHHHHhc---CCCceEEEEeccccccccCcC--ccCEE
Q psy2046 39 GHRVLIFSQFIFVLDILGHYMDIRGWRHLRLDGATQVSSRQELIDEYNR---DQDLFAFLLSTKAGGLGINLT--AADTV 113 (138)
Q Consensus 39 ~~k~iif~~~~~~~~~l~~~l~~~g~~~~~i~g~~~~~~R~~~~~~F~~---~~~~~vll~~~~~~~~Gl~l~--~~~~v 113 (138)
|-.+..+.+..+.++ .+.......+.++-.++...-.+.++..+. .+...+++++......-.... +++.
T Consensus 27 g~~v~~~~~~~~a~~----~l~~~~~dlii~D~~l~~~~g~~~~~~l~~~~~~~~~~ii~~s~~~~~~~~~~~~~g~~~- 101 (127)
T 3i42_A 27 GFQADYVMSGTDALH----AMSTRGYDAVFIDLNLPDTSGLALVKQLRALPMEKTSKFVAVSGFAKNDLGKEACELFDF- 101 (127)
T ss_dssp TEEEEEESSHHHHHH----HHHHSCCSEEEEESBCSSSBHHHHHHHHHHSCCSSCCEEEEEECC-CTTCCHHHHHHCSE-
T ss_pred CCCEEEECCHHHHHH----HHHhcCCCEEEEeCCCCCCCHHHHHHHHHhhhccCCCCEEEEECCcchhHHHHHHHhhHH-
Confidence 445555554433333 334455677788777766666667776664 344555665543322111111 2222
Q ss_pred EEeCCCCCccchhHHHHHHhhcC
Q psy2046 114 IIHDVDFNPYNDKQAEDRCHRVG 136 (138)
Q Consensus 114 i~~~~~~~~~~~~Q~~gR~~R~G 136 (138)
++.-|+++....+++.+.++-+
T Consensus 102 -~l~KP~~~~~L~~~i~~~~~~~ 123 (127)
T 3i42_A 102 -YLEKPIDIASLEPILQSIEGHH 123 (127)
T ss_dssp -EEESSCCHHHHHHHHHHHC---
T ss_pred -heeCCCCHHHHHHHHHHhhccC
Confidence 4456788888888888877654
No 154
>2q3b_A Cysteine synthase A; pyridoxal-5'-phosphate, sulphur metabolism, cysteine biosynthesis, transferase; HET: LLP; 1.80A {Mycobacterium tuberculosis} PDB: 2q3c_A* 2q3d_A* 3rr2_A
Probab=67.69 E-value=28 Score=24.22 Aligned_cols=73 Identities=18% Similarity=0.086 Sum_probs=51.2
Q ss_pred cCchHHHHHHHHHHhhhCCC----eEEEEeccHHHHHHHHHHHhhcCCeEEEEeCCCChHHHHHHHHHHhcCCCceEEEE
Q psy2046 21 ESGKLKKLDEILPDLKKNGH----RVLIFSQFIFVLDILGHYMDIRGWRHLRLDGATQVSSRQELIDEYNRDQDLFAFLL 96 (138)
Q Consensus 21 ~s~K~~~l~~ll~~~~~~~~----k~iif~~~~~~~~~l~~~l~~~g~~~~~i~g~~~~~~R~~~~~~F~~~~~~~vll~ 96 (138)
-|-|...+..++....+.+. ..||=..+-+....++.+....|+++..+........+...++.| |. .|+++
T Consensus 44 gSfK~R~a~~~l~~a~~~g~~~~g~~vv~assGN~g~alA~~a~~~G~~~~iv~p~~~~~~k~~~~~~~--Ga--~v~~~ 119 (313)
T 2q3b_A 44 NSVKDRIGVAMLQAAEQAGLIKPDTIILEPTSGNTGIALAMVCAARGYRCVLTMPETMSLERRMLLRAY--GA--ELILT 119 (313)
T ss_dssp SBTHHHHHHHHHHHHHHTTCCCTTCEEEEECSSHHHHHHHHHHHHHTCEEEEEEETTSCHHHHHHHHHT--TC--EEEEE
T ss_pred CcHHHHHHHHHHHHHHHcCCCCCCCEEEEeCCCHHHHHHHHHHHHcCCcEEEEECCCCCHHHHHHHHHC--CC--EEEEe
Confidence 56799988888887766553 455556667778888888888999977665544446677778877 33 34554
Q ss_pred e
Q psy2046 97 S 97 (138)
Q Consensus 97 ~ 97 (138)
.
T Consensus 120 ~ 120 (313)
T 2q3b_A 120 P 120 (313)
T ss_dssp C
T ss_pred C
Confidence 4
No 155
>2egu_A Cysteine synthase; O-acetylserine sulfhydrase, structural genomics, NPPSFA, NAT project on protein structural and functional analyses; 1.90A {Geobacillus kaustophilus}
Probab=66.99 E-value=29 Score=24.10 Aligned_cols=65 Identities=15% Similarity=0.102 Sum_probs=48.1
Q ss_pred cCchHHHHHHHHHHhhhCCC----eEEEEeccHHHHHHHHHHHhhcCCeEEEEeCCCChHHHHHHHHHH
Q psy2046 21 ESGKLKKLDEILPDLKKNGH----RVLIFSQFIFVLDILGHYMDIRGWRHLRLDGATQVSSRQELIDEY 85 (138)
Q Consensus 21 ~s~K~~~l~~ll~~~~~~~~----k~iif~~~~~~~~~l~~~l~~~g~~~~~i~g~~~~~~R~~~~~~F 85 (138)
-|-|...+..++....+.+. ..||=..+-+....++.+-...|+++..+........+.+.++.|
T Consensus 42 gSfK~R~a~~~l~~a~~~g~~~~g~~vv~assGN~g~a~A~~a~~~G~~~~iv~p~~~~~~k~~~~~~~ 110 (308)
T 2egu_A 42 SSVKDRIALAMIEAAEKAGKLKPGDTIVEPTSGNTGIGLAMVAAAKGYKAVLVMPDTMSLERRNLLRAY 110 (308)
T ss_dssp SBTHHHHHHHHHHHHHHTTCCCTTCEEEEECCHHHHHHHHHHHHHHTCEEEEEEESCSCHHHHHHHHHT
T ss_pred CChHHHHHHHHHHHHHHcCCCCCCCEEEEeCCCHHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHHc
Confidence 56799988888887766554 456666677888888888888999977655544446677777877
No 156
>2rdm_A Response regulator receiver protein; structural genomics, unknown function, PSI-2, protein struct initiative; HET: MSE; 1.76A {Sinorhizobium medicae}
Probab=66.83 E-value=15 Score=21.11 Aligned_cols=91 Identities=13% Similarity=0.027 Sum_probs=47.9
Q ss_pred CCCeEEEEeccHHHHHHHHHHHhhc-CCeEEEEeCCCCh-HHHHHHHHHHhc-CCCceEEEEeccccc----cccCcCcc
Q psy2046 38 NGHRVLIFSQFIFVLDILGHYMDIR-GWRHLRLDGATQV-SSRQELIDEYNR-DQDLFAFLLSTKAGG----LGINLTAA 110 (138)
Q Consensus 38 ~~~k~iif~~~~~~~~~l~~~l~~~-g~~~~~i~g~~~~-~~R~~~~~~F~~-~~~~~vll~~~~~~~----~Gl~l~~~ 110 (138)
.+-.+..+.+..+.+. .+... ....+.++-.++. ..-.+.++..+. .+...+++++..... .++..
T Consensus 28 ~g~~v~~~~~~~~a~~----~l~~~~~~dlvi~d~~l~~~~~g~~~~~~l~~~~~~~~ii~~s~~~~~~~~~~~~~~--- 100 (132)
T 2rdm_A 28 AGFLVTAVSSGAKAIE----MLKSGAAIDGVVTDIRFCQPPDGWQVARVAREIDPNMPIVYISGHAALEWASNGVPD--- 100 (132)
T ss_dssp TTCEEEEESSHHHHHH----HHHTTCCCCEEEEESCCSSSSCHHHHHHHHHHHCTTCCEEEEESSCCTTHHHHSCTT---
T ss_pred cCCEEEEECCHHHHHH----HHHcCCCCCEEEEeeeCCCCCCHHHHHHHHHhcCCCCCEEEEeCCccHHHHHhhcCC---
Confidence 4556655444333333 33333 4667777766553 334445555542 234445555543311 22222
Q ss_pred CEEEEeCCCCCccchhHHHHHHhhcCC
Q psy2046 111 DTVIIHDVDFNPYNDKQAEDRCHRVGQ 137 (138)
Q Consensus 111 ~~vi~~~~~~~~~~~~Q~~gR~~R~GQ 137 (138)
. -++.-|.++....+++.++.+.++
T Consensus 101 ~--~~l~kP~~~~~l~~~i~~~~~~~~ 125 (132)
T 2rdm_A 101 S--IILEKPFTSAQLITAVSQLLNARE 125 (132)
T ss_dssp C--EEEESSCCHHHHHHHHHHHHHTTC
T ss_pred c--ceEeCCCCHHHHHHHHHHHHhcCC
Confidence 1 234567888888888888876553
No 157
>2d1f_A Threonine synthase; amino acid synthesis, pyridoxal-5'-phosphate, PLP, lyase; HET: PLP; 2.50A {Mycobacterium tuberculosis}
Probab=66.81 E-value=32 Score=24.56 Aligned_cols=66 Identities=12% Similarity=-0.031 Sum_probs=49.8
Q ss_pred ccCchHHHHHHHHHHhhhCCCeEEEEeccHHHHHHHHHHHhhcCCeEEEEeCCC-ChHHHHHHHHHH
Q psy2046 20 VESGKLKKLDEILPDLKKNGHRVLIFSQFIFVLDILGHYMDIRGWRHLRLDGAT-QVSSRQELIDEY 85 (138)
Q Consensus 20 ~~s~K~~~l~~ll~~~~~~~~k~iif~~~~~~~~~l~~~l~~~g~~~~~i~g~~-~~~~R~~~~~~F 85 (138)
.-|-|...+..++....+.+.+.||=+.+-+....++.+-...|+++..+.... ....+...++.|
T Consensus 65 tgSfKdR~a~~~l~~a~~~g~~~vv~aSsGN~g~alA~~a~~~G~~~~i~~p~~~~~~~k~~~~~~~ 131 (360)
T 2d1f_A 65 TGSFKDRGMTMAVTDALAHGQRAVLCASTGNTSASAAAYAARAGITCAVLIPQGKIAMGKLAQAVMH 131 (360)
T ss_dssp TSBTTHHHHHHHHHHHHHTTCSEEEECCSSHHHHHHHHHHHHHTCEEEEEECSSCCCHHHHHHHHHT
T ss_pred CcCHHHHHHHHHHHHHHHCCCCEEEEeCCcHHHHHHHHHHHHcCCcEEEEEcCCCCCHHHHHHHHHc
Confidence 456799988888887777776666666666777788887788899987776654 446677788877
No 158
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=66.76 E-value=30 Score=24.26 Aligned_cols=90 Identities=9% Similarity=-0.029 Sum_probs=53.6
Q ss_pred cCchHHH-HHHHHHHhhh--CCCeEEEEeccHHHHHHHHHHHhh----cCCeEEEEeCCCChHHHHHHHHHHhcCCCceE
Q psy2046 21 ESGKLKK-LDEILPDLKK--NGHRVLIFSQFIFVLDILGHYMDI----RGWRHLRLDGATQVSSRQELIDEYNRDQDLFA 93 (138)
Q Consensus 21 ~s~K~~~-l~~ll~~~~~--~~~k~iif~~~~~~~~~l~~~l~~----~g~~~~~i~g~~~~~~R~~~~~~F~~~~~~~v 93 (138)
-++|... +.-++..+.. .+.+++|.++...-...+.+.+.+ .++.+..++|+.+..+....+. . ..+
T Consensus 68 GsGKT~~~~~~~~~~l~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~---~---~~i 141 (394)
T 1fuu_A 68 GTGKTGTFSIAALQRIDTSVKAPQALMLAPTRELALQIQKVVMALAFHMDIKVHACIGGTSFVEDAEGLR---D---AQI 141 (394)
T ss_dssp SHHHHHHHHHHHHHHCCTTCCSCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEEEECSSCCHHHHHHHHH---H---CSE
T ss_pred CChHHHHHHHHHHHHhhccCCCCCEEEEcCCHHHHHHHHHHHHHHhccCCeeEEEEeCCCchHHHHhhcC---C---CCE
Confidence 3567654 3334443322 356899999998877766665544 4678899999988665554443 1 234
Q ss_pred EEEeccccc-----cccCcCccCEEEEe
Q psy2046 94 FLLSTKAGG-----LGINLTAADTVIIH 116 (138)
Q Consensus 94 ll~~~~~~~-----~Gl~l~~~~~vi~~ 116 (138)
+++++...- ..+.+...+.+|+=
T Consensus 142 ~v~T~~~l~~~~~~~~~~~~~~~~vIiD 169 (394)
T 1fuu_A 142 VVGTPGRVFDNIQRRRFRTDKIKMFILD 169 (394)
T ss_dssp EEECHHHHHHHHHTTSSCCTTCCEEEEE
T ss_pred EEECHHHHHHHHHhCCcchhhCcEEEEE
Confidence 666654432 22334455556553
No 159
>3jx9_A Putative phosphoheptose isomerase; YP_001815198.1, structura genomics, joint center for structural genomics, JCSG; HET: MSE; 1.95A {Exiguobacterium sibiricum 255-15}
Probab=65.60 E-value=14 Score=23.72 Aligned_cols=39 Identities=18% Similarity=-0.112 Sum_probs=30.3
Q ss_pred hhCCCeEEEEeccHHH--HHHHHHHHhhcCCeEEEEeC-CCC
Q psy2046 36 KKNGHRVLIFSQFIFV--LDILGHYMDIRGWRHLRLDG-ATQ 74 (138)
Q Consensus 36 ~~~~~k~iif~~~~~~--~~~l~~~l~~~g~~~~~i~g-~~~ 74 (138)
..+++.++|||++-.. .-.++..++++|.+++.+++ ..+
T Consensus 75 i~~~D~vii~S~Sg~n~~~ie~A~~ake~G~~vIaITs~~~~ 116 (170)
T 3jx9_A 75 LHAVDRVLIFTPDTERSDLLASLARYDAWHTPYSIITLGDVT 116 (170)
T ss_dssp CCTTCEEEEEESCSCCHHHHHHHHHHHHHTCCEEEEESSCCC
T ss_pred CCCCCEEEEEeCCCCCHHHHHHHHHHHHCCCcEEEEeCcchh
Confidence 3557899999998754 45566777888999999999 544
No 160
>2a9o_A Response regulator; essential protein, YYCF/YYCG homolog, signaling protein; 1.65A {Streptococcus pneumoniae} SCOP: c.23.1.1 PDB: 1nxo_A 1nxs_A 1nxv_A 1nxw_A 1nxx_A 1nxp_A 2a9p_A 2a9q_A 1nxt_A* 2a9r_A*
Probab=64.89 E-value=16 Score=20.56 Aligned_cols=91 Identities=16% Similarity=0.113 Sum_probs=45.3
Q ss_pred CCCeEEEEeccHHHHHHHHHHHhhcCCeEEEEeCCCChHHHHHHHHHHhcCCCceEEEEeccccc----cccCcCccCEE
Q psy2046 38 NGHRVLIFSQFIFVLDILGHYMDIRGWRHLRLDGATQVSSRQELIDEYNRDQDLFAFLLSTKAGG----LGINLTAADTV 113 (138)
Q Consensus 38 ~~~k~iif~~~~~~~~~l~~~l~~~g~~~~~i~g~~~~~~R~~~~~~F~~~~~~~vll~~~~~~~----~Gl~l~~~~~v 113 (138)
.+..+..+.+..+.+.. +.......+.++-.++...-.+.++..+..+...+++++..... ..+.. ++..
T Consensus 24 ~~~~v~~~~~~~~a~~~----~~~~~~dlvl~D~~l~~~~g~~~~~~l~~~~~~~ii~~s~~~~~~~~~~~~~~-g~~~- 97 (120)
T 2a9o_A 24 EGYEVVTAFNGREALEQ----FEAEQPDIIILDLMLPEIDGLEVAKTIRKTSSVPILMLSAKDSEFDKVIGLEL-GADD- 97 (120)
T ss_dssp TTCEEEEESSHHHHHHH----HHHHCCSEEEECSSCSSSCHHHHHHHHHHHCCCCEEEEESCCSHHHHHHHHHH-TCSE-
T ss_pred cCcEEEEecCHHHHHHH----HHhCCCCEEEEeccCCCCCHHHHHHHHHhCCCCCEEEEecCCchHHHHHHHhC-CHhh-
Confidence 45566554443333333 33345667777666554344444555443334445555533211 11111 2322
Q ss_pred EEeCCCCCccchhHHHHHHhhc
Q psy2046 114 IIHDVDFNPYNDKQAEDRCHRV 135 (138)
Q Consensus 114 i~~~~~~~~~~~~Q~~gR~~R~ 135 (138)
++.-|+++....+++.++.+.
T Consensus 98 -~l~Kp~~~~~l~~~i~~~~~~ 118 (120)
T 2a9o_A 98 -YVTKPFSNRELQARVKALLRR 118 (120)
T ss_dssp -EEESSCCHHHHHHHHHHHHHC
T ss_pred -eEeCCCCHHHHHHHHHHHHcc
Confidence 234577888888888777654
No 161
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=64.70 E-value=29 Score=23.32 Aligned_cols=90 Identities=17% Similarity=0.070 Sum_probs=53.9
Q ss_pred cCchHHH-HHHHHHHhhh------CCCeEEEEeccHHHHHHHHHHHhh----cCCeEEEEeCCCChHHHHHHHHHHhcCC
Q psy2046 21 ESGKLKK-LDEILPDLKK------NGHRVLIFSQFIFVLDILGHYMDI----RGWRHLRLDGATQVSSRQELIDEYNRDQ 89 (138)
Q Consensus 21 ~s~K~~~-l~~ll~~~~~------~~~k~iif~~~~~~~~~l~~~l~~----~g~~~~~i~g~~~~~~R~~~~~~F~~~~ 89 (138)
-++|... +.-++..+.+ .+.+++|.++.+.-+..+.+.+++ .+..+..+.|+.+.......+ ..+
T Consensus 101 GsGKT~~~~l~~l~~l~~~~~~~~~~~~~lil~Pt~~La~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~---~~~- 176 (262)
T 3ly5_A 101 GSGKTLAFLIPAVELIVKLRFMPRNGTGVLILSPTRELAMQTFGVLKELMTHHVHTYGLIMGGSNRSAEAQKL---GNG- 176 (262)
T ss_dssp TSCHHHHHHHHHHHHHHHTTCCGGGCCCEEEECSSHHHHHHHHHHHHHHTTTCCSCEEEECSSSCHHHHHHHH---HHC-
T ss_pred CCCchHHHHHHHHHHHHhccccccCCceEEEEeCCHHHHHHHHHHHHHHHhhcCceEEEEECCCCHHHHHHHh---cCC-
Confidence 4677654 4444444332 467899999998877666665554 467788899988755443333 333
Q ss_pred CceEEEEecccc------ccccCcCccCEEEE
Q psy2046 90 DLFAFLLSTKAG------GLGINLTAADTVII 115 (138)
Q Consensus 90 ~~~vll~~~~~~------~~Gl~l~~~~~vi~ 115 (138)
..++++++... ..++.+.....+|+
T Consensus 177 -~~Iiv~Tp~~l~~~~~~~~~~~~~~l~~lVi 207 (262)
T 3ly5_A 177 -INIIVATPGRLLDHMQNTPGFMYKNLQCLVI 207 (262)
T ss_dssp -CSEEEECHHHHHHHHHHCTTCCCTTCCEEEE
T ss_pred -CCEEEEcHHHHHHHHHccCCcccccCCEEEE
Confidence 34455554322 22456666766666
No 162
>3d1p_A Putative thiosulfate sulfurtransferase YOR285W; atomic structure, atomic resolution structure, PSI, MCSG; HET: MSE; 0.98A {Saccharomyces cerevisiae}
Probab=64.42 E-value=5.7 Score=24.07 Aligned_cols=36 Identities=6% Similarity=0.017 Sum_probs=29.0
Q ss_pred CCCeEEEEeccHHHHHHHHHHHhhcCCe-EEEEeCCC
Q psy2046 38 NGHRVLIFSQFIFVLDILGHYMDIRGWR-HLRLDGAT 73 (138)
Q Consensus 38 ~~~k~iif~~~~~~~~~l~~~l~~~g~~-~~~i~g~~ 73 (138)
.+.++|+||..-.........|...|++ +..+.|+.
T Consensus 90 ~~~~ivvyC~~G~rs~~aa~~L~~~G~~~v~~l~GG~ 126 (139)
T 3d1p_A 90 SAKELIFYCASGKRGGEAQKVASSHGYSNTSLYPGSM 126 (139)
T ss_dssp TTSEEEEECSSSHHHHHHHHHHHTTTCCSEEECTTHH
T ss_pred CCCeEEEECCCCchHHHHHHHHHHcCCCCeEEeCCcH
Confidence 4568999999877777888899999986 66777865
No 163
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A
Probab=64.31 E-value=22 Score=27.58 Aligned_cols=50 Identities=22% Similarity=0.274 Sum_probs=41.4
Q ss_pred CchHHHHHHHHHHhhh-CCCeEEEEeccHHHHHHHHHHHhhcCCeEEEEeC
Q psy2046 22 SGKLKKLDEILPDLKK-NGHRVLIFSQFIFVLDILGHYMDIRGWRHLRLDG 71 (138)
Q Consensus 22 s~K~~~l~~ll~~~~~-~~~k~iif~~~~~~~~~l~~~l~~~g~~~~~i~g 71 (138)
++|...+..++..+.. .+.++++-+++...++.+.+.+...|++++.+.+
T Consensus 206 TGKT~~~~~~i~~l~~~~~~~ilv~a~tn~A~~~l~~~l~~~~~~~~R~~~ 256 (624)
T 2gk6_A 206 TGKTVTSATIVYHLARQGNGPVLVCAPSNIAVDQLTEKIHQTGLKVVRLCA 256 (624)
T ss_dssp SCHHHHHHHHHHHHHTSSSCCEEEEESSHHHHHHHHHHHHTTTCCEEECCC
T ss_pred CCHHHHHHHHHHHHHHcCCCeEEEEeCcHHHHHHHHHHHHhcCCeEEeecc
Confidence 4788888888887765 6789999999999999999999888877666544
No 164
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=63.24 E-value=37 Score=23.99 Aligned_cols=94 Identities=14% Similarity=0.095 Sum_probs=54.1
Q ss_pred ccCchHHHHHH-HHHHhhh--CCCeEEEEeccHHHHHHHHHHHhh----cCCeEEEEeCCCChHHHHHHHHHHhcCCCce
Q psy2046 20 VESGKLKKLDE-ILPDLKK--NGHRVLIFSQFIFVLDILGHYMDI----RGWRHLRLDGATQVSSRQELIDEYNRDQDLF 92 (138)
Q Consensus 20 ~~s~K~~~l~~-ll~~~~~--~~~k~iif~~~~~~~~~l~~~l~~----~g~~~~~i~g~~~~~~R~~~~~~F~~~~~~~ 92 (138)
.-++|.....- ++..+.. .+.+++|.++...-+..+.+.++. .++.+..++|+.+..+.. .... ....
T Consensus 67 TGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~---~~~~--~~~~ 141 (400)
T 1s2m_A 67 NGTGKTAAFVIPTLEKVKPKLNKIQALIMVPTRELALQTSQVVRTLGKHCGISCMVTTGGTNLRDDI---LRLN--ETVH 141 (400)
T ss_dssp TTSCHHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHHHTTTTTCCEEEECSSSCHHHHH---HHTT--SCCS
T ss_pred CCcHHHHHHHHHHHHHHhhccCCccEEEEcCCHHHHHHHHHHHHHHhcccCceEEEEeCCcchHHHH---HHhc--CCCC
Confidence 34678765433 3333322 355899999998877666666654 377888899988754332 2222 2334
Q ss_pred EEEEecccc-----ccccCcCccCEEEEeCC
Q psy2046 93 AFLLSTKAG-----GLGINLTAADTVIIHDV 118 (138)
Q Consensus 93 vll~~~~~~-----~~Gl~l~~~~~vi~~~~ 118 (138)
++++++... ....++...+.+|+=+.
T Consensus 142 Ivv~T~~~l~~~~~~~~~~~~~~~~vIiDEa 172 (400)
T 1s2m_A 142 ILVGTPGRVLDLASRKVADLSDCSLFIMDEA 172 (400)
T ss_dssp EEEECHHHHHHHHHTTCSCCTTCCEEEEESH
T ss_pred EEEEchHHHHHHHHhCCcccccCCEEEEeCc
Confidence 566665432 12344556666666433
No 165
>3grc_A Sensor protein, kinase; protein structure initiative II(PSI II), NYSGXRC, 11025B, structural genomics; 2.21A {Polaromonas SP}
Probab=63.20 E-value=20 Score=20.91 Aligned_cols=93 Identities=14% Similarity=0.053 Sum_probs=50.7
Q ss_pred CCCeEEEEeccHHHHHHHHHHHhhcCCeEEEEeCCCChHHHHHHHHHHhc---CCCceEEEEeccccccc-c-CcCccCE
Q psy2046 38 NGHRVLIFSQFIFVLDILGHYMDIRGWRHLRLDGATQVSSRQELIDEYNR---DQDLFAFLLSTKAGGLG-I-NLTAADT 112 (138)
Q Consensus 38 ~~~k~iif~~~~~~~~~l~~~l~~~g~~~~~i~g~~~~~~R~~~~~~F~~---~~~~~vll~~~~~~~~G-l-~l~~~~~ 112 (138)
.+-.+..+.+..+.++ .+.......+.++-.++...-.+.++..+. .+...+++++......- . ....+..
T Consensus 29 ~g~~v~~~~~~~~a~~----~l~~~~~dlvi~d~~l~~~~g~~~~~~l~~~~~~~~~~ii~~s~~~~~~~~~~~~~~~g~ 104 (140)
T 3grc_A 29 GGFDSDMVHSAAQALE----QVARRPYAAMTVDLNLPDQDGVSLIRALRRDSRTRDLAIVVVSANAREGELEFNSQPLAV 104 (140)
T ss_dssp TTCEEEEECSHHHHHH----HHHHSCCSEEEECSCCSSSCHHHHHHHHHTSGGGTTCEEEEECTTHHHHHHHHCCTTTCC
T ss_pred CCCeEEEECCHHHHHH----HHHhCCCCEEEEeCCCCCCCHHHHHHHHHhCcccCCCCEEEEecCCChHHHHHHhhhcCC
Confidence 4555655554433333 334455677777777766666667777664 23455566554321111 1 2222222
Q ss_pred EEEeCCCCCccchhHHHHHHhh
Q psy2046 113 VIIHDVDFNPYNDKQAEDRCHR 134 (138)
Q Consensus 113 vi~~~~~~~~~~~~Q~~gR~~R 134 (138)
.-++.-|+++..+.+++.++.+
T Consensus 105 ~~~l~kP~~~~~l~~~i~~~l~ 126 (140)
T 3grc_A 105 STWLEKPIDENLLILSLHRAID 126 (140)
T ss_dssp CEEECSSCCHHHHHHHHHHHHH
T ss_pred CEEEeCCCCHHHHHHHHHHHHH
Confidence 2334567888888888877754
No 166
>3qmx_A Glutaredoxin A, glutaredoxin 3; electron transport; 1.82A {Synechocystis SP} SCOP: c.47.1.0
Probab=63.12 E-value=19 Score=20.51 Aligned_cols=46 Identities=7% Similarity=-0.024 Sum_probs=33.9
Q ss_pred CCeEEEEec-cHHHHHHHHHHHhhcCCeEEEEeCCCChHHHHHHHHH
Q psy2046 39 GHRVLIFSQ-FIFVLDILGHYMDIRGWRHLRLDGATQVSSRQELIDE 84 (138)
Q Consensus 39 ~~k~iif~~-~~~~~~~l~~~l~~~g~~~~~i~g~~~~~~R~~~~~~ 84 (138)
..+++||+. +...+.....+|.+.|+++..++=...+..++...+.
T Consensus 15 ~~~v~vy~~~~Cp~C~~ak~~L~~~~i~y~~idI~~~~~~~~~l~~~ 61 (99)
T 3qmx_A 15 SAKIEIYTWSTCPFCMRALALLKRKGVEFQEYCIDGDNEAREAMAAR 61 (99)
T ss_dssp CCCEEEEECTTCHHHHHHHHHHHHHTCCCEEEECTTCHHHHHHHHHH
T ss_pred CCCEEEEEcCCChhHHHHHHHHHHCCCCCEEEEcCCCHHHHHHHHHH
Confidence 357888764 4467889999999999999988887776665554443
No 167
>1v5x_A PRA isomerase, phosphoribosylanthranilate isomerase; alpha-beta barrel, TRPF, riken structural genomics/proteomics initiative, RSGI; 2.00A {Thermus thermophilus} SCOP: c.1.2.4
Probab=62.79 E-value=21 Score=23.54 Aligned_cols=51 Identities=16% Similarity=0.029 Sum_probs=35.7
Q ss_pred HHHHHHHHHhhhCCCeEEEEeccHHHHHHHHHHHhhcCCeEEEEeCCCChHHH
Q psy2046 26 KKLDEILPDLKKNGHRVLIFSQFIFVLDILGHYMDIRGWRHLRLDGATQVSSR 78 (138)
Q Consensus 26 ~~l~~ll~~~~~~~~k~iif~~~~~~~~~l~~~l~~~g~~~~~i~g~~~~~~R 78 (138)
....++...+...-.++-||.+.. .+.+.+.....++.++.+||..+++.-
T Consensus 40 ~~a~~i~~~~~~~~~~VgVfvn~~--~~~i~~~~~~~~ld~vQLHG~e~~~~~ 90 (203)
T 1v5x_A 40 EAARAIGEALGPFVVRVGVFRDQP--PEEVLRLMEEARLQVAQLHGEEPPEWA 90 (203)
T ss_dssp HHHHHHHHHSCSSSEEEEEESSCC--HHHHHHHHHHTTCSEEEECSCCCHHHH
T ss_pred HHHHHHHHhCCCCCCEEEEEeCCC--HHHHHHHHHhhCCCEEEECCCCCHHHH
Confidence 444445544333356899999754 567777778889999999998876543
No 168
>1o58_A O-acetylserine sulfhydrylase; TM0665, structural genomics, J protein structure initiative, joint center for structural G transferase; 1.80A {Thermotoga maritima} SCOP: c.79.1.1 PDB: 3fca_A*
Probab=62.48 E-value=35 Score=23.65 Aligned_cols=66 Identities=15% Similarity=-0.008 Sum_probs=45.8
Q ss_pred ccCchHHHHHHHHHHhhhCCC--eEEEEeccHHHHHHHHHHHhhcCCeEEEEeCCCChHHHHHHHHHH
Q psy2046 20 VESGKLKKLDEILPDLKKNGH--RVLIFSQFIFVLDILGHYMDIRGWRHLRLDGATQVSSRQELIDEY 85 (138)
Q Consensus 20 ~~s~K~~~l~~ll~~~~~~~~--k~iif~~~~~~~~~l~~~l~~~g~~~~~i~g~~~~~~R~~~~~~F 85 (138)
.-|-|...+..++....+.+. +.||=..+-+....++.+-...|+++..+........+...++.|
T Consensus 43 tGSfK~R~a~~~l~~a~~~g~~~~~vv~aSsGN~g~a~A~aa~~~G~~~~iv~p~~~~~~k~~~~~~~ 110 (303)
T 1o58_A 43 GGSVKDRPALFMILDAEKRGLLKNGIVEPTSGNMGIAIAMIGAKRGHRVILTMPETMSVERRKVLKML 110 (303)
T ss_dssp TSBTTHHHHHHHHHHHHHTTCCTTCEEEECSSHHHHHHHHHHHHHTCCEEEEEETTSCHHHHHHHHHT
T ss_pred CCChHHHHHHHHHHHHHHcCCCCCCEEEECchHHHHHHHHHHHHcCCcEEEEECCCCCHHHHHHHHHc
Confidence 356699988888887665553 334444445667788888888999977665544446777788887
No 169
>2gkg_A Response regulator homolog; social motility, receiver domain, signalling, high resolutio signaling protein; 1.00A {Myxococcus xanthus} PDB: 2i6f_A 2nt4_A 2nt3_A
Probab=62.18 E-value=19 Score=20.34 Aligned_cols=90 Identities=8% Similarity=-0.053 Sum_probs=45.1
Q ss_pred CCeEEEEeccHHHHHHHHHHHhhcCCeEEEEeCCCC-hHHHHHHHHHHhcC---CCceEEEEeccccc---cccCcCccC
Q psy2046 39 GHRVLIFSQFIFVLDILGHYMDIRGWRHLRLDGATQ-VSSRQELIDEYNRD---QDLFAFLLSTKAGG---LGINLTAAD 111 (138)
Q Consensus 39 ~~k~iif~~~~~~~~~l~~~l~~~g~~~~~i~g~~~-~~~R~~~~~~F~~~---~~~~vll~~~~~~~---~Gl~l~~~~ 111 (138)
+-.+..+.+..+.+..+ .......+.++-.++ ...-.+.++..+.. +...+++++..... ..+.. ++.
T Consensus 29 g~~v~~~~~~~~a~~~~----~~~~~dlvi~d~~~~~~~~g~~~~~~l~~~~~~~~~~ii~~~~~~~~~~~~~~~~-g~~ 103 (127)
T 2gkg_A 29 GFTVDETTDGKGSVEQI----RRDRPDLVVLAVDLSAGQNGYLICGKLKKDDDLKNVPIVIIGNPDGFAQHRKLKA-HAD 103 (127)
T ss_dssp TCEEEEECCHHHHHHHH----HHHCCSEEEEESBCGGGCBHHHHHHHHHHSTTTTTSCEEEEECGGGHHHHHHSTT-CCS
T ss_pred CceEEEecCHHHHHHHH----HhcCCCEEEEeCCCCCCCCHHHHHHHHhcCccccCCCEEEEecCCchhHHHHHHh-Ccc
Confidence 55665555443433333 334466777766655 44444555555532 34444444322211 12221 233
Q ss_pred EEEEeCCCCCccchhHHHHHHhhc
Q psy2046 112 TVIIHDVDFNPYNDKQAEDRCHRV 135 (138)
Q Consensus 112 ~vi~~~~~~~~~~~~Q~~gR~~R~ 135 (138)
. ++.-|.++....+++.++.+.
T Consensus 104 ~--~l~kp~~~~~l~~~i~~~~~~ 125 (127)
T 2gkg_A 104 E--YVAKPVDADQLVERAGALIGF 125 (127)
T ss_dssp E--EEESSCCHHHHHHHHHHHHCC
T ss_pred h--heeCCCCHHHHHHHHHHHHcC
Confidence 3 234577888888888777653
No 170
>3hzu_A Thiosulfate sulfurtransferase SSEA; niaid, ssgcid, infectious disease, transferase structural genomics; 2.10A {Mycobacterium tuberculosis} PDB: 3p3a_A
Probab=61.95 E-value=16 Score=25.69 Aligned_cols=47 Identities=13% Similarity=0.123 Sum_probs=33.2
Q ss_pred HHHHHHHHHh-hhCCCeEEEEeccHH-HHHHHHHHHhhcCCe-EEEEeCC
Q psy2046 26 KKLDEILPDL-KKNGHRVLIFSQFIF-VLDILGHYMDIRGWR-HLRLDGA 72 (138)
Q Consensus 26 ~~l~~ll~~~-~~~~~k~iif~~~~~-~~~~l~~~l~~~g~~-~~~i~g~ 72 (138)
..+.+.+..+ ...+..+||||.... ........|+..|+. +..+.|+
T Consensus 97 ~~~~~~l~~lgi~~~~~vVvyc~~g~~~a~~a~~~L~~~G~~~V~~L~GG 146 (318)
T 3hzu_A 97 EQFAELMDRKGIARDDTVVIYGDKSNWWAAYALWVFTLFGHADVRLLNGG 146 (318)
T ss_dssp HHHHHHHHHTTCCTTCEEEEECSGGGHHHHHHHHHHHHTTCSCEEEETTH
T ss_pred HHHHHHHHHcCCCCCCeEEEECCCCCccHHHHHHHHHHcCCCceEEccCC
Confidence 4555666554 345678999998765 566777888888985 6677765
No 171
>2q5c_A NTRC family transcriptional regulator; structural genomics, protein structure initiative; HET: SO4 GOL; 1.49A {Clostridium acetobutylicum atcc 824}
Probab=61.82 E-value=30 Score=22.51 Aligned_cols=92 Identities=9% Similarity=0.124 Sum_probs=54.3
Q ss_pred CCeEEEEeccHHHHHHHHHHHhhcCCeEEEEeCCCChHHHHHHHHHHhcCCCceEEEEeccccccccCcCccCEEEEeCC
Q psy2046 39 GHRVLIFSQFIFVLDILGHYMDIRGWRHLRLDGATQVSSRQELIDEYNRDQDLFAFLLSTKAGGLGINLTAADTVIIHDV 118 (138)
Q Consensus 39 ~~k~iif~~~~~~~~~l~~~l~~~g~~~~~i~g~~~~~~R~~~~~~F~~~~~~~vll~~~~~~~~Gl~l~~~~~vi~~~~ 118 (138)
..++++.+++....+...+...+.+.....+.|... +-....++. + ....+++ |.. +.+--+...-.+=..+.
T Consensus 4 ~~~I~~iapy~~l~~~~~~i~~e~~~~i~i~~~~l~--~~v~~a~~~-~-~~~dVII-SRG--gta~~lr~~~~iPVV~I 76 (196)
T 2q5c_A 4 SLKIALISQNENLLNLFPKLALEKNFIPITKTASLT--RASKIAFGL-Q-DEVDAII-SRG--ATSDYIKKSVSIPSISI 76 (196)
T ss_dssp CCEEEEEESCHHHHHHHHHHHHHHTCEEEEEECCHH--HHHHHHHHH-T-TTCSEEE-EEH--HHHHHHHTTCSSCEEEE
T ss_pred CCcEEEEEccHHHHHHHHHHHhhhCCceEEEECCHH--HHHHHHHHh-c-CCCeEEE-ECC--hHHHHHHHhCCCCEEEE
Confidence 458889999999888888888877777777777753 333444444 3 2334444 322 22211211111222244
Q ss_pred CCCccchhHHHHHHhhcCC
Q psy2046 119 DFNPYNDKQAEDRCHRVGQ 137 (138)
Q Consensus 119 ~~~~~~~~Q~~gR~~R~GQ 137 (138)
+.+..+..+++-++-+++.
T Consensus 77 ~~s~~Dil~al~~a~~~~~ 95 (196)
T 2q5c_A 77 KVTRFDTMRAVYNAKRFGN 95 (196)
T ss_dssp CCCHHHHHHHHHHHGGGCS
T ss_pred cCCHhHHHHHHHHHHhhCC
Confidence 6677778888888777654
No 172
>1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19
Probab=61.78 E-value=32 Score=22.77 Aligned_cols=71 Identities=10% Similarity=-0.009 Sum_probs=44.7
Q ss_pred CeEEEEeccHHHHHHHHHHHhh----cCCeEEEEeCCCChHHHHHHHHHHhcCCCceEEEEeccccc-----cccCcCcc
Q psy2046 40 HRVLIFSQFIFVLDILGHYMDI----RGWRHLRLDGATQVSSRQELIDEYNRDQDLFAFLLSTKAGG-----LGINLTAA 110 (138)
Q Consensus 40 ~k~iif~~~~~~~~~l~~~l~~----~g~~~~~i~g~~~~~~R~~~~~~F~~~~~~~vll~~~~~~~-----~Gl~l~~~ 110 (138)
.++||.+++..-+..+.+.++. .++.+..++|+.+..+..+. ... ...++++++...- ..+++...
T Consensus 101 ~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~---~~~--~~~Ivv~Tp~~l~~~l~~~~~~~~~~ 175 (253)
T 1wrb_A 101 PKCLILAPTRELAIQILSESQKFSLNTPLRSCVVYGGADTHSQIRE---VQM--GCHLLVATPGRLVDFIEKNKISLEFC 175 (253)
T ss_dssp CSEEEECSSHHHHHHHHHHHHHHHTTSSCCEEEECSSSCSHHHHHH---HSS--CCSEEEECHHHHHHHHHTTSBCCTTC
T ss_pred ceEEEEECCHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHH---hCC--CCCEEEECHHHHHHHHHcCCCChhhC
Confidence 5899999998877766666654 35778889998875544332 222 3345666665542 23455566
Q ss_pred CEEEE
Q psy2046 111 DTVII 115 (138)
Q Consensus 111 ~~vi~ 115 (138)
+.+|+
T Consensus 176 ~~lVi 180 (253)
T 1wrb_A 176 KYIVL 180 (253)
T ss_dssp CEEEE
T ss_pred CEEEE
Confidence 66665
No 173
>3f6p_A Transcriptional regulatory protein YYCF; unphosphorelated, receiver domain, cytoplasm, DNA-binding, phosphoprotein, transcription regulation; 1.95A {Bacillus subtilis} SCOP: c.23.1.1 PDB: 2zwm_A
Probab=61.66 E-value=20 Score=20.40 Aligned_cols=90 Identities=16% Similarity=0.096 Sum_probs=48.8
Q ss_pred CCCeEEEEeccHHHHHHHHHHHhhcCCeEEEEeCCCChHHHHHHHHHHhcCCCceEEEEeccccc----cccCcCccCEE
Q psy2046 38 NGHRVLIFSQFIFVLDILGHYMDIRGWRHLRLDGATQVSSRQELIDEYNRDQDLFAFLLSTKAGG----LGINLTAADTV 113 (138)
Q Consensus 38 ~~~k~iif~~~~~~~~~l~~~l~~~g~~~~~i~g~~~~~~R~~~~~~F~~~~~~~vll~~~~~~~----~Gl~l~~~~~v 113 (138)
.+-.+..+.+..+.+ +.+.......+.++-.++...-.+.++..+......+++++..... ..+.. +++..
T Consensus 25 ~g~~v~~~~~~~~al----~~~~~~~~dlii~D~~~p~~~g~~~~~~lr~~~~~~ii~~t~~~~~~~~~~~~~~-ga~~~ 99 (120)
T 3f6p_A 25 EGYEVHCAHDGNEAV----EMVEELQPDLILLDIMLPNKDGVEVCREVRKKYDMPIIMLTAKDSEIDKVIGLEI-GADDY 99 (120)
T ss_dssp TTCEEEEESSHHHHH----HHHHTTCCSEEEEETTSTTTHHHHHHHHHHTTCCSCEEEEEESSCHHHHHHHHHT-TCCEE
T ss_pred CCEEEEEeCCHHHHH----HHHhhCCCCEEEEeCCCCCCCHHHHHHHHHhcCCCCEEEEECCCChHHHHHHHhC-Cccee
Confidence 455665554433322 2334456677888888877666677777765444445555533211 12222 23222
Q ss_pred EEeCCCCCccchhHHHHHHhh
Q psy2046 114 IIHDVDFNPYNDKQAEDRCHR 134 (138)
Q Consensus 114 i~~~~~~~~~~~~Q~~gR~~R 134 (138)
+.-|+++.....++.++.|
T Consensus 100 --l~KP~~~~~l~~~i~~~l~ 118 (120)
T 3f6p_A 100 --VTKPFSTRELLARVKANLR 118 (120)
T ss_dssp --EEESCCHHHHHHHHHHHHT
T ss_pred --EcCCCCHHHHHHHHHHHHh
Confidence 2347777777777766544
No 174
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens}
Probab=61.47 E-value=16 Score=24.10 Aligned_cols=90 Identities=20% Similarity=0.234 Sum_probs=51.8
Q ss_pred ccCchHHH-HHHHHHHhhh---CCCeEEEEeccHHHHHHHHHHHhhc----CCeEEEEeCCCChHHHHHHHHHHh--cCC
Q psy2046 20 VESGKLKK-LDEILPDLKK---NGHRVLIFSQFIFVLDILGHYMDIR----GWRHLRLDGATQVSSRQELIDEYN--RDQ 89 (138)
Q Consensus 20 ~~s~K~~~-l~~ll~~~~~---~~~k~iif~~~~~~~~~l~~~l~~~----g~~~~~i~g~~~~~~R~~~~~~F~--~~~ 89 (138)
.-++|... +.-++..+.. .+.+++|.+++..-+..+.+.++.. ++.+..++|+.... ..+. ...
T Consensus 75 TGsGKT~~~~l~~l~~l~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~ 148 (245)
T 3dkp_A 75 TGSGKTLAFSIPILMQLKQPANKGFRALIISPTRELASQIHRELIKISEGTGFRIHMIHKAAVAA------KKFGPKSSK 148 (245)
T ss_dssp TTSCHHHHHHHHHHHHHCSCCSSSCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEECCCHHHHHH------TTTSTTSCC
T ss_pred CCCcHHHHHHHHHHHHHhhcccCCceEEEEeCCHHHHHHHHHHHHHHhcccCceEEEEecCccHH------HHhhhhhcC
Confidence 34678654 4445554432 4568999999998877777766654 66666666543211 1121 122
Q ss_pred CceEEEEeccccc-------cccCcCccCEEEE
Q psy2046 90 DLFAFLLSTKAGG-------LGINLTAADTVII 115 (138)
Q Consensus 90 ~~~vll~~~~~~~-------~Gl~l~~~~~vi~ 115 (138)
...++++++...- ..+++.....+|+
T Consensus 149 ~~~I~v~Tp~~l~~~l~~~~~~~~~~~~~~lVi 181 (245)
T 3dkp_A 149 KFDILVTTPNRLIYLLKQDPPGIDLASVEWLVV 181 (245)
T ss_dssp CCCEEEECHHHHHHHHHSSSCSCCCTTCCEEEE
T ss_pred CCCEEEECHHHHHHHHHhCCCCcccccCcEEEE
Confidence 3455666654431 2466777777766
No 175
>3tbh_A O-acetyl serine sulfhydrylase; cysteine synthase, type II PLP dependent enzyme, serine ACET transferase; HET: LLP; 1.68A {Leishmania donovani} PDB: 3spx_A* 3t4p_A* 4air_A*
Probab=61.45 E-value=40 Score=23.84 Aligned_cols=73 Identities=19% Similarity=0.107 Sum_probs=50.2
Q ss_pred cCchHHHHHHHHHHhhhCCC-----eEEEEeccHHHHHHHHHHHhhcCCeEEEEeCCCChHHHHHHHHHHhcCCCceEEE
Q psy2046 21 ESGKLKKLDEILPDLKKNGH-----RVLIFSQFIFVLDILGHYMDIRGWRHLRLDGATQVSSRQELIDEYNRDQDLFAFL 95 (138)
Q Consensus 21 ~s~K~~~l~~ll~~~~~~~~-----k~iif~~~~~~~~~l~~~l~~~g~~~~~i~g~~~~~~R~~~~~~F~~~~~~~vll 95 (138)
-|-|...+..++.+..+.+. .+||-+..-+....++.+-...|+++..+........+...++.| |. .|++
T Consensus 48 GSfK~R~a~~~i~~a~~~g~l~~g~~vvv~aSsGN~g~alA~aa~~~G~~~~iv~p~~~~~~k~~~~~~~--GA--~V~~ 123 (334)
T 3tbh_A 48 ASVKDRLGFAIYDKAEKEGKLIPGKSIVVESSSGNTGVSLAHLGAIRGYKVIITMPESMSLERRCLLRIF--GA--EVIL 123 (334)
T ss_dssp SBTHHHHHHHHHHHHHHTTSCCTTTCEEEEECSSHHHHHHHHHHHHHTCEEEEEEETTSCHHHHHHHHHT--TC--EEEE
T ss_pred cCcHHHHHHHHHHHHHHcCCCCCCCeEEEEeCCCHHHHHHHHHHHHhCCCEEEEECCCCCHHHHHHHHHC--CC--EEEE
Confidence 46788888888877666553 333444456777888888888899987766665556777778877 32 3455
Q ss_pred Ee
Q psy2046 96 LS 97 (138)
Q Consensus 96 ~~ 97 (138)
+.
T Consensus 124 ~~ 125 (334)
T 3tbh_A 124 TP 125 (334)
T ss_dssp EC
T ss_pred EC
Confidence 54
No 176
>3nhm_A Response regulator; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.19A {Myxococcus xanthus}
Probab=61.23 E-value=21 Score=20.53 Aligned_cols=95 Identities=7% Similarity=-0.177 Sum_probs=51.1
Q ss_pred hhCCCeEEEEeccHHHHHHHHHHHhhcCCeEEEEeCCCChHHHHHHHHHHhcC---CCceEEEEeccccccccCcCccCE
Q psy2046 36 KKNGHRVLIFSQFIFVLDILGHYMDIRGWRHLRLDGATQVSSRQELIDEYNRD---QDLFAFLLSTKAGGLGINLTAADT 112 (138)
Q Consensus 36 ~~~~~k~iif~~~~~~~~~l~~~l~~~g~~~~~i~g~~~~~~R~~~~~~F~~~---~~~~vll~~~~~~~~Gl~l~~~~~ 112 (138)
.+.+-.+..+.+..+.+.. +.......+.++-.++...-.+.++..+.. +...+++++......-.....+..
T Consensus 24 l~~~~~v~~~~~~~~a~~~----l~~~~~dlvi~d~~l~~~~g~~~~~~l~~~~~~~~~pii~~s~~~~~~~~~~~~~g~ 99 (133)
T 3nhm_A 24 LSGEFDCTTAADGASGLQQ----ALAHPPDVLISDVNMDGMDGYALCGHFRSEPTLKHIPVIFVSGYAPRTEGPADQPVP 99 (133)
T ss_dssp HTTTSEEEEESSHHHHHHH----HHHSCCSEEEECSSCSSSCHHHHHHHHHHSTTTTTCCEEEEESCCC-----TTSCCC
T ss_pred HhCCcEEEEECCHHHHHHH----HhcCCCCEEEEeCCCCCCCHHHHHHHHHhCCccCCCCEEEEeCCCcHhHHHHhhcCC
Confidence 3355566665554443333 344566778888777666666677776642 344556665432211122111111
Q ss_pred EEEeCCCCCccchhHHHHHHhh
Q psy2046 113 VIIHDVDFNPYNDKQAEDRCHR 134 (138)
Q Consensus 113 vi~~~~~~~~~~~~Q~~gR~~R 134 (138)
.-++.-|+++....+++.++-+
T Consensus 100 ~~~l~KP~~~~~l~~~i~~~l~ 121 (133)
T 3nhm_A 100 DAYLVKPVKPPVLIAQLHALLA 121 (133)
T ss_dssp SEEEESSCCHHHHHHHHHHHHH
T ss_pred ceEEeccCCHHHHHHHHHHHHh
Confidence 1234458888888888877743
No 177
>3hdv_A Response regulator; PSI-II, structural genomics, Pro structure initiative, NEW YORK SGX research center for STRU genomics, nysgxrc; 2.09A {Pseudomonas putida} SCOP: c.23.1.0
Probab=61.14 E-value=22 Score=20.62 Aligned_cols=90 Identities=11% Similarity=-0.076 Sum_probs=45.5
Q ss_pred CCeEEEEeccHHHHHHHHHHHhhcC-CeEEEEeCCCChHHHHHHHHHHhcC--CCceEEEEeccccc----cccCcCccC
Q psy2046 39 GHRVLIFSQFIFVLDILGHYMDIRG-WRHLRLDGATQVSSRQELIDEYNRD--QDLFAFLLSTKAGG----LGINLTAAD 111 (138)
Q Consensus 39 ~~k~iif~~~~~~~~~l~~~l~~~g-~~~~~i~g~~~~~~R~~~~~~F~~~--~~~~vll~~~~~~~----~Gl~l~~~~ 111 (138)
+-.+..+.+..+....+. ... ...+.++-.++...-.+.++..+.. +...+++++..... ..+.. ++.
T Consensus 31 g~~v~~~~~~~~a~~~~~----~~~~~dlvi~D~~l~~~~g~~~~~~l~~~~~~~~~ii~~s~~~~~~~~~~~~~~-g~~ 105 (136)
T 3hdv_A 31 GIDAVGADGAEEARLYLH----YQKRIGLMITDLRMQPESGLDLIRTIRASERAALSIIVVSGDTDVEEAVDVMHL-GVV 105 (136)
T ss_dssp TCCEEEESSHHHHHHHHH----HCTTEEEEEECSCCSSSCHHHHHHHHHTSTTTTCEEEEEESSCCHHHHHHHHHT-TCS
T ss_pred CceEEEeCCHHHHHHHHH----hCCCCcEEEEeccCCCCCHHHHHHHHHhcCCCCCCEEEEeCCCChHHHHHHHhC-Ccc
Confidence 555655554443333332 222 4566666666655566666666643 34445555533211 11111 222
Q ss_pred EEEEeCCCCCccchhHHHHHHhhc
Q psy2046 112 TVIIHDVDFNPYNDKQAEDRCHRV 135 (138)
Q Consensus 112 ~vi~~~~~~~~~~~~Q~~gR~~R~ 135 (138)
. ++.-|+++..+.+++.|+.+-
T Consensus 106 ~--~l~KP~~~~~l~~~i~~~~~~ 127 (136)
T 3hdv_A 106 D--FLLKPVDLGKLLELVNKELKI 127 (136)
T ss_dssp E--EEESSCCHHHHHHHHHHHHC-
T ss_pred e--EEeCCCCHHHHHHHHHHHhcC
Confidence 2 234567888888887777543
No 178
>1e0c_A Rhodanese, sulfurtransferase; sulfur metabolism, thiosulfate:cyanide sulfurtransferase; 1.8A {Azotobacter vinelandii} SCOP: c.46.1.2 c.46.1.2 PDB: 1h4k_X 1h4m_X
Probab=60.75 E-value=14 Score=25.00 Aligned_cols=47 Identities=13% Similarity=0.191 Sum_probs=32.4
Q ss_pred HHHHHHHHHh-hhCCCeEEEEeccHH-HHHHHHHHHhhcCCe-EEEEeCC
Q psy2046 26 KKLDEILPDL-KKNGHRVLIFSQFIF-VLDILGHYMDIRGWR-HLRLDGA 72 (138)
Q Consensus 26 ~~l~~ll~~~-~~~~~k~iif~~~~~-~~~~l~~~l~~~g~~-~~~i~g~ 72 (138)
..+.+.+..+ ...+..+||||..-. ........|+..|+. +..+.|+
T Consensus 67 ~~~~~~~~~~gi~~~~~vvvyc~~g~~~s~~a~~~L~~~G~~~v~~L~GG 116 (271)
T 1e0c_A 67 EQLESLFGELGHRPEAVYVVYDDEGGGWAGRFIWLLDVIGQQRYHYLNGG 116 (271)
T ss_dssp HHHHHHHHHHTCCTTCEEEEECSSSSHHHHHHHHHHHHTTCCCEEEETTH
T ss_pred HHHHHHHHHcCCCCCCeEEEEcCCCCccHHHHHHHHHHcCCCCeEEecCC
Confidence 4555556554 345678999998654 566777888888985 6667776
No 179
>2khp_A Glutaredoxin; thioredoxin type domain, ssgcid, electron TRAN structural genomics, seattle structural genomics center for infectious disease; NMR {Brucella melitensis}
Probab=60.62 E-value=19 Score=19.69 Aligned_cols=51 Identities=14% Similarity=0.131 Sum_probs=35.4
Q ss_pred eEEEEec-cHHHHHHHHHHHhhcCCeEEEEeCCCChHHHHHHHHHHhcCCCc
Q psy2046 41 RVLIFSQ-FIFVLDILGHYMDIRGWRHLRLDGATQVSSRQELIDEYNRDQDL 91 (138)
Q Consensus 41 k~iif~~-~~~~~~~l~~~l~~~g~~~~~i~g~~~~~~R~~~~~~F~~~~~~ 91 (138)
++++|+. +...+..+...|.+.++++..++=...+..+.+..+.+.....+
T Consensus 7 ~v~ly~~~~C~~C~~~~~~L~~~~i~~~~~di~~~~~~~~~l~~~~~~~~vP 58 (92)
T 2khp_A 7 DVIIYTRPGCPYCARAKALLARKGAEFNEIDASATPELRAEMQERSGRNTFP 58 (92)
T ss_dssp CEEEEECTTCHHHHHHHHHHHHTTCCCEEEESTTSHHHHHHHHHHHTSSCCC
T ss_pred cEEEEECCCChhHHHHHHHHHHcCCCcEEEECCCCHHHHHHHHHHhCCCCcC
Confidence 5777764 34668888899999999988887766555566666566444344
No 180
>2pqm_A Cysteine synthase; OASS, PLP, lyase; HET: PLP; 1.86A {Entamoeba histolytica} PDB: 3bm5_A*
Probab=60.14 E-value=43 Score=23.74 Aligned_cols=65 Identities=20% Similarity=0.016 Sum_probs=44.6
Q ss_pred cCchHHHHHHHHHHhhhCCC----eEEEEeccHHHHHHHHHHHhhcCCeEEEEeCCCChHHHHHHHHHH
Q psy2046 21 ESGKLKKLDEILPDLKKNGH----RVLIFSQFIFVLDILGHYMDIRGWRHLRLDGATQVSSRQELIDEY 85 (138)
Q Consensus 21 ~s~K~~~l~~ll~~~~~~~~----k~iif~~~~~~~~~l~~~l~~~g~~~~~i~g~~~~~~R~~~~~~F 85 (138)
-|-|...+..++....+.+. ..||=+..-+....++.+-...|+++..+........+.+.++.|
T Consensus 55 GSfKdR~a~~~l~~a~~~g~~~~g~~vv~aSsGN~g~alA~aa~~~G~~~~iv~p~~~~~~k~~~~~~~ 123 (343)
T 2pqm_A 55 SSVKDRVGFNIVYQAIKDGRLKPGMEIIESTSGNTGIALCQAGAVFGYRVNIAMPSTMSVERQMIMKAF 123 (343)
T ss_dssp SBTHHHHHHHHHHHHHHHTSSCTTCEEEEECSSHHHHHHHHHHHHHTCCEEEEEETTSCHHHHHHHHHT
T ss_pred CChHHHHHHHHHHHHHHcCCCCCCCEEEEECCcHHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHHC
Confidence 35588888877776655443 344444446667788888888999977766554556777788887
No 181
>3sr3_A Microcin immunity protein MCCF; csgid, structural genomics, MCCF protein, center for structu genomics of infectious diseases, immune system; 1.50A {Bacillus anthracis} PDB: 3gjz_A 3t5m_A* 3u1b_A* 3tyx_A*
Probab=59.86 E-value=44 Score=23.80 Aligned_cols=68 Identities=19% Similarity=0.303 Sum_probs=41.2
Q ss_pred hCCCeEEEEeccH-------HHHHHHHHHHhhcCCeEEEE------eC--CCChHHHHHHHHHHhcCCCceEEEEecccc
Q psy2046 37 KNGHRVLIFSQFI-------FVLDILGHYMDIRGWRHLRL------DG--ATQVSSRQELIDEYNRDQDLFAFLLSTKAG 101 (138)
Q Consensus 37 ~~~~k~iif~~~~-------~~~~~l~~~l~~~g~~~~~i------~g--~~~~~~R~~~~~~F~~~~~~~vll~~~~~~ 101 (138)
+.|+++-|.+++- ..++.-.+.|+..|+.+..- ++ +-+.++|.+-+.++-.++.++.++. ..|
T Consensus 11 ~~GD~I~ivaPSs~~~~~~~~~~~~~~~~L~~~G~~v~~~~~~~~~~~~~ag~d~~Ra~dL~~a~~Dp~i~aI~~--~rG 88 (336)
T 3sr3_A 11 KYGDTIGIYSPSSPVTYTSPKRFERAKSYLLQKGFHILEGSLTGRYDYYRSGSIQERAKELNALIRNPNVSCIMS--TIG 88 (336)
T ss_dssp CTTCEEEEECSSSCHHHHCHHHHHHHHHHHHHTTCEEEECTTTTCCBTTBSSCHHHHHHHHHHHHHCTTEEEEEE--SCC
T ss_pred CCCCEEEEEeCCCCccccCHHHHHHHHHHHHhCCCEEEEcccccccccccCCCHHHHHHHHHHHhhCCCCCEEEE--ccc
Confidence 4578888887764 33555666777788876541 11 2355667666655555667775553 346
Q ss_pred ccccC
Q psy2046 102 GLGIN 106 (138)
Q Consensus 102 ~~Gl~ 106 (138)
|.|.+
T Consensus 89 G~g~~ 93 (336)
T 3sr3_A 89 GMNSN 93 (336)
T ss_dssp CSCGG
T ss_pred cccHH
Confidence 66654
No 182
>3dmn_A Putative DNA helicase; APC89291.2, lactobacillus plantarum WCFS1, STR genomics, PSI-2, midwest center for structural genomics; HET: MSE; 1.66A {Lactobacillus plantarum}
Probab=59.83 E-value=30 Score=21.82 Aligned_cols=77 Identities=13% Similarity=0.129 Sum_probs=48.9
Q ss_pred HHHHHHHHhhhCCCeEEEEeccHHHHHHHHHHHhhcCCeEEEEeCCCChHHHHHHHHHHhcCCCceEEEEeccccccccC
Q psy2046 27 KLDEILPDLKKNGHRVLIFSQFIFVLDILGHYMDIRGWRHLRLDGATQVSSRQELIDEYNRDQDLFAFLLSTKAGGLGIN 106 (138)
Q Consensus 27 ~l~~ll~~~~~~~~k~iif~~~~~~~~~l~~~l~~~g~~~~~i~g~~~~~~R~~~~~~F~~~~~~~vll~~~~~~~~Gl~ 106 (138)
.+.+.+.........+-|.+........+.+.|...|+++..+.+... .|. . . +.+.|--..-|+.
T Consensus 49 ~i~~~I~~~~~g~~~iAVL~r~~~~~~~l~~~L~~~gi~~~~l~~~~~---------~~~---~-~-v~v~t~~~~KGlE 114 (174)
T 3dmn_A 49 QVVDQLAMNDSERDTTAIIGKSLAECEALTKALKARGEQVTLIQTENQ---------RLA---P-G-VIVVPSFLAKGLE 114 (174)
T ss_dssp HHHHHHHHHHHTTCCEEEEESSHHHHHHHHHHHHTTTCCEEECSSCC----------CCC---S-S-EEEEEGGGCTTCC
T ss_pred HHHHHHHHhccCCCcEEEEecCHHHHHHHHHHHHHcCCcceeeccccc---------ccC---C-C-eEEEEccccCCcC
Confidence 444555442223456778888888889999999999998877765432 121 1 2 4444566667876
Q ss_pred cCccCEEEEeCCCC
Q psy2046 107 LTAADTVIIHDVDF 120 (138)
Q Consensus 107 l~~~~~vi~~~~~~ 120 (138)
.++||++++..
T Consensus 115 ---f~~V~~~~~~~ 125 (174)
T 3dmn_A 115 ---FDAVIVWNANQ 125 (174)
T ss_dssp ---EEEEEEETCBT
T ss_pred ---CCEEEEecCCc
Confidence 56777777653
No 183
>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens}
Probab=59.56 E-value=40 Score=23.24 Aligned_cols=88 Identities=9% Similarity=0.003 Sum_probs=53.7
Q ss_pred ccCchHHH-HHHHHHHhhhC--CCeEEEEeccHHHHHHHHHHHhhc-----CCeEEEEeCCCChHHHHHHHHHHhcCCCc
Q psy2046 20 VESGKLKK-LDEILPDLKKN--GHRVLIFSQFIFVLDILGHYMDIR-----GWRHLRLDGATQVSSRQELIDEYNRDQDL 91 (138)
Q Consensus 20 ~~s~K~~~-l~~ll~~~~~~--~~k~iif~~~~~~~~~l~~~l~~~-----g~~~~~i~g~~~~~~R~~~~~~F~~~~~~ 91 (138)
.-++|... +.-++..+... +.++||.++++.-+..+...++.. ++.+....|+.+..... ....
T Consensus 140 TGsGKT~a~~lp~l~~l~~~~~~~~~lil~PtreLa~Q~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~--------~~~~ 211 (300)
T 3fmo_B 140 SGTGKTAAFVLAMLSQVEPANKYPQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERGQ--------KISE 211 (300)
T ss_dssp TTSSHHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHHHTTTSTTCCEEEESTTCCCCTTC--------CCCC
T ss_pred CCCCccHHHHHHHHHhhhccCCCceEEEEcCcHHHHHHHHHHHHHHHhhCCCcEEEEEeCCccHhhhh--------cCCC
Confidence 34678654 44666655433 347999999998877766666543 46677788776533221 1233
Q ss_pred eEEEEecccc-----c-cccCcCccCEEEE
Q psy2046 92 FAFLLSTKAG-----G-LGINLTAADTVII 115 (138)
Q Consensus 92 ~vll~~~~~~-----~-~Gl~l~~~~~vi~ 115 (138)
.++++++... . ..+++.....+|+
T Consensus 212 ~IlV~TP~~l~~~l~~~~~~~l~~l~~lVl 241 (300)
T 3fmo_B 212 QIVIGTPGTVLDWCSKLKFIDPKKIKVFVL 241 (300)
T ss_dssp SEEEECHHHHHHHHTTTCCCCGGGCSEEEE
T ss_pred CEEEECHHHHHHHHHhcCCCChhhceEEEE
Confidence 4566665543 1 2456677777776
No 184
>3tg1_B Dual specificity protein phosphatase 10; kinase/rhodanese-like domain, docking interaction, transfera hydrolase complex; 2.71A {Homo sapiens}
Probab=59.51 E-value=7.2 Score=24.32 Aligned_cols=35 Identities=17% Similarity=0.286 Sum_probs=28.4
Q ss_pred CCeEEEEeccH---------HHHHHHHHHHhhcCCeEEEEeCCC
Q psy2046 39 GHRVLIFSQFI---------FVLDILGHYMDIRGWRHLRLDGAT 73 (138)
Q Consensus 39 ~~k~iif~~~~---------~~~~~l~~~l~~~g~~~~~i~g~~ 73 (138)
++.+|+||..- .........|...|+++..+.|+.
T Consensus 93 ~~~IVvyc~~g~~~~~~~~~~~s~~a~~~L~~~G~~v~~L~GG~ 136 (158)
T 3tg1_B 93 SKEIIVYDENTNEPSRVMPSQPLHIVLESLKREGKEPLVLKGGL 136 (158)
T ss_dssp TSCEEEECSCCSCTTSCCSSSHHHHHHHHHHTTTCCEEEETTHH
T ss_pred CCeEEEEECCCCcccccCcchHHHHHHHHHHhCCCcEEEeCCcH
Confidence 56899999877 346778888888999988898975
No 185
>1uar_A Rhodanese; sulfurtransferase, riken structural genomics/PROT initiative, RSGI, structural genomics, transferase; 1.70A {Thermus thermophilus} SCOP: c.46.1.2 c.46.1.2
Probab=59.24 E-value=18 Score=24.69 Aligned_cols=46 Identities=11% Similarity=0.208 Sum_probs=31.0
Q ss_pred HHHHHHHHh-hhCCCeEEEEeccHH-HHHHHHHHHhhcCCe-EEEEeCC
Q psy2046 27 KLDEILPDL-KKNGHRVLIFSQFIF-VLDILGHYMDIRGWR-HLRLDGA 72 (138)
Q Consensus 27 ~l~~ll~~~-~~~~~k~iif~~~~~-~~~~l~~~l~~~g~~-~~~i~g~ 72 (138)
.+.+.+..+ ...+.++|+||..-. ........|...|+. +..+.|+
T Consensus 66 ~~~~~~~~~gi~~~~~ivvyc~~g~~~s~~a~~~L~~~G~~~v~~l~GG 114 (285)
T 1uar_A 66 EFAKLMERLGISNDTTVVLYGDKNNWWAAYAFWFFKYNGHKDVRLMNGG 114 (285)
T ss_dssp HHHHHHHHTTCCTTCEEEEECHHHHHHHHHHHHHHHHTTCSCEEEETTH
T ss_pred HHHHHHHHcCCCCCCeEEEECCCCCccHHHHHHHHHHcCCCCeEEecCC
Confidence 344555543 345678999998755 456677788888885 6677765
No 186
>1urh_A 3-mercaptopyruvate sulfurtransferase; rhodanese; 2.8A {Escherichia coli} SCOP: c.46.1.2 c.46.1.2
Probab=59.15 E-value=10 Score=25.93 Aligned_cols=47 Identities=9% Similarity=0.118 Sum_probs=32.5
Q ss_pred HHHHHHHHHh-hhCCCeEEEEeccHHH-HHHHHHHHhhcCCe-EEEEeCC
Q psy2046 26 KKLDEILPDL-KKNGHRVLIFSQFIFV-LDILGHYMDIRGWR-HLRLDGA 72 (138)
Q Consensus 26 ~~l~~ll~~~-~~~~~k~iif~~~~~~-~~~l~~~l~~~g~~-~~~i~g~ 72 (138)
..+.+.+..+ ...+..+||||..-.. .......|+..|+. +..+.|+
T Consensus 72 ~~~~~~~~~~gi~~~~~ivvyc~~g~~~a~~a~~~L~~~G~~~v~~l~GG 121 (280)
T 1urh_A 72 ETFAVAMRELGVNQDKHLIVYDEGNLFSAPRAWWMLRTFGVEKVSILGGG 121 (280)
T ss_dssp HHHHHHHHHTTCCTTSEEEEECSSSCSSHHHHHHHHHHTTCSCEEEETTH
T ss_pred HHHHHHHHHcCCCCCCeEEEECCCCCccHHHHHHHHHHcCCCCEEEecCC
Confidence 4555566554 3456789999987544 66777888888984 6677775
No 187
>1uar_A Rhodanese; sulfurtransferase, riken structural genomics/PROT initiative, RSGI, structural genomics, transferase; 1.70A {Thermus thermophilus} SCOP: c.46.1.2 c.46.1.2
Probab=58.79 E-value=21 Score=24.28 Aligned_cols=48 Identities=10% Similarity=0.204 Sum_probs=33.8
Q ss_pred HHHHHHHHHh-hhCCCeEEEEeccHHHHHHHHHHHh-hcCC-eEEEEeCCC
Q psy2046 26 KKLDEILPDL-KKNGHRVLIFSQFIFVLDILGHYMD-IRGW-RHLRLDGAT 73 (138)
Q Consensus 26 ~~l~~ll~~~-~~~~~k~iif~~~~~~~~~l~~~l~-~~g~-~~~~i~g~~ 73 (138)
..+.+.+... ...++.+|+||..-.........|. ..|+ .+..+.|+.
T Consensus 219 ~~l~~~~~~~g~~~~~~ivvyC~~G~rs~~a~~~L~~~~G~~~v~~l~GG~ 269 (285)
T 1uar_A 219 EELRALYEPLGITKDKDIVVYCRIAERSSHSWFVLKYLLGYPHVKNYDGSW 269 (285)
T ss_dssp HHHHHHHGGGTCCTTSEEEEECSSHHHHHHHHHHHHTTSCCSCEEEESSHH
T ss_pred HHHHHHHHHcCCCCCCCEEEECCchHHHHHHHHHHHHHcCCCCcceeCchH
Confidence 3444445432 2346789999998777777788888 8898 477888865
No 188
>3eqz_A Response regulator; structural genomics, unknown function, PSI-2, protein struct initiative; 2.15A {Colwellia psychrerythraea} SCOP: c.23.1.0
Probab=58.79 E-value=23 Score=20.29 Aligned_cols=78 Identities=10% Similarity=-0.084 Sum_probs=45.4
Q ss_pred HHhhcCCeEEEEeCCCChHHHHHHHHHHhc-CCCceEEEEeccccc-----ccc-CcCccCEEEEeCCCCCccchhHHHH
Q psy2046 58 YMDIRGWRHLRLDGATQVSSRQELIDEYNR-DQDLFAFLLSTKAGG-----LGI-NLTAADTVIIHDVDFNPYNDKQAED 130 (138)
Q Consensus 58 ~l~~~g~~~~~i~g~~~~~~R~~~~~~F~~-~~~~~vll~~~~~~~-----~Gl-~l~~~~~vi~~~~~~~~~~~~Q~~g 130 (138)
.+... ...+.++-.++...-.+.++..+. .+...+++++..... ..+ ....+...-++.-|+++....+++.
T Consensus 42 ~~~~~-~dlvi~D~~l~~~~g~~~~~~l~~~~~~~~ii~~s~~~~~~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~l~ 120 (135)
T 3eqz_A 42 LSLNK-QDIIILDLMMPDMDGIEVIRHLAEHKSPASLILISGYDSGVLHSAETLALSCGLNVINTFTKPINTEVLTCFLT 120 (135)
T ss_dssp SCCCT-TEEEEEECCTTTTHHHHHHHHHHHTTCCCEEEEEESSCHHHHHHHHHHHHHTTCEEEEEEESSCCHHHHHHHHH
T ss_pred hhccC-CCEEEEeCCCCCCCHHHHHHHHHhCCCCCCEEEEEeccchhHHHHHHHHHHcCCCcceeeCCCCCHHHHHHHHH
Confidence 33444 677888887777667777777763 334455665543321 100 1112222334466889999989988
Q ss_pred HHhhcC
Q psy2046 131 RCHRVG 136 (138)
Q Consensus 131 R~~R~G 136 (138)
++...+
T Consensus 121 ~~~~~~ 126 (135)
T 3eqz_A 121 SLSNRQ 126 (135)
T ss_dssp HHSCCC
T ss_pred HHHhhc
Confidence 876544
No 189
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=58.76 E-value=36 Score=22.58 Aligned_cols=50 Identities=16% Similarity=0.126 Sum_probs=37.0
Q ss_pred CchHHHHHHHHHHhhhCCCeEEEEeccHHHHHHHHHHHhhcCCe-EEEEeCCCC
Q psy2046 22 SGKLKKLDEILPDLKKNGHRVLIFSQFIFVLDILGHYMDIRGWR-HLRLDGATQ 74 (138)
Q Consensus 22 s~K~~~l~~ll~~~~~~~~k~iif~~~~~~~~~l~~~l~~~g~~-~~~i~g~~~ 74 (138)
++|......++.. .+.+++|+++....+..+.+.+.+.++. +..++|+..
T Consensus 119 ~GKT~~a~~~~~~---~~~~~liv~P~~~L~~q~~~~~~~~~~~~v~~~~g~~~ 169 (237)
T 2fz4_A 119 SGKTHVAMAAINE---LSTPTLIVVPTLALAEQWKERLGIFGEEYVGEFSGRIK 169 (237)
T ss_dssp TTHHHHHHHHHHH---SCSCEEEEESSHHHHHHHHHHHGGGCGGGEEEESSSCB
T ss_pred CCHHHHHHHHHHH---cCCCEEEEeCCHHHHHHHHHHHHhCCCCeEEEEeCCCC
Confidence 4676666555543 2668999999988888888888777777 788887653
No 190
>1zgz_A Torcad operon transcriptional regulatory protein; two-component system, gene regulation, transcription factor, respiratory system; 1.80A {Escherichia coli} SCOP: c.23.1.1
Probab=58.45 E-value=23 Score=20.01 Aligned_cols=90 Identities=11% Similarity=0.023 Sum_probs=46.3
Q ss_pred CCCeEEEEeccHHHHHHHHHHHhhcCCeEEEEeCCCChHHHHHHHHHHhcCCCceEEEEeccccc----cccCcCccCEE
Q psy2046 38 NGHRVLIFSQFIFVLDILGHYMDIRGWRHLRLDGATQVSSRQELIDEYNRDQDLFAFLLSTKAGG----LGINLTAADTV 113 (138)
Q Consensus 38 ~~~k~iif~~~~~~~~~l~~~l~~~g~~~~~i~g~~~~~~R~~~~~~F~~~~~~~vll~~~~~~~----~Gl~l~~~~~v 113 (138)
.+..+..+.+..... ..+.......+.++-.++...-...++..+..+...+++++..... .++.. +++.
T Consensus 25 ~~~~v~~~~~~~~~~----~~~~~~~~dlvi~d~~l~~~~g~~~~~~l~~~~~~~ii~~s~~~~~~~~~~~~~~-ga~~- 98 (122)
T 1zgz_A 25 EGYTVSVTASGAGLR----EIMQNQSVDLILLDINLPDENGLMLTRALRERSTVGIILVTGRSDRIDRIVGLEM-GADD- 98 (122)
T ss_dssp TTCEEEEESSHHHHH----HHHHHSCCSEEEEESCCSSSCHHHHHHHHHTTCCCEEEEEESSCCHHHHHHHHHH-TCSE-
T ss_pred CCCeEEEecCHHHHH----HHHhcCCCCEEEEeCCCCCCChHHHHHHHHhcCCCCEEEEECCCChhhHHHHHHh-CHHH-
Confidence 355555444332222 3344445667777766655445556666655444455555533211 11211 2332
Q ss_pred EEeCCCCCccchhHHHHHHhh
Q psy2046 114 IIHDVDFNPYNDKQAEDRCHR 134 (138)
Q Consensus 114 i~~~~~~~~~~~~Q~~gR~~R 134 (138)
++.-|+++....+++.++.|
T Consensus 99 -~l~Kp~~~~~l~~~i~~~~~ 118 (122)
T 1zgz_A 99 -YVTKPLELRELVVRVKNLLW 118 (122)
T ss_dssp -EEESSCCHHHHHHHHHHHHH
T ss_pred -HccCCCCHHHHHHHHHHHHH
Confidence 23457788888888777654
No 191
>4a4z_A Antiviral helicase SKI2; hydrolase, ATPase, mRNA degradation, exosome; HET: ANP; 2.40A {Saccharomyces cerevisiae} PDB: 4a4k_A
Probab=58.25 E-value=45 Score=27.59 Aligned_cols=54 Identities=11% Similarity=-0.008 Sum_probs=39.9
Q ss_pred cCchHHHHHHHHHHhhhCCCeEEEEeccHHHHHHHHHHHhhc--CCeEEEEeCCCC
Q psy2046 21 ESGKLKKLDEILPDLKKNGHRVLIFSQFIFVLDILGHYMDIR--GWRHLRLDGATQ 74 (138)
Q Consensus 21 ~s~K~~~l~~ll~~~~~~~~k~iif~~~~~~~~~l~~~l~~~--g~~~~~i~g~~~ 74 (138)
-++|.....-.+......+.+++|.++.+.-.....+.+... ++.+..++|+.+
T Consensus 64 GsGKTlv~~~~i~~~~~~g~~vlvl~PtraLa~Q~~~~l~~~~~~~~v~~l~G~~~ 119 (997)
T 4a4z_A 64 SAGKTVVAEYAIAMAHRNMTKTIYTSPIKALSNQKFRDFKETFDDVNIGLITGDVQ 119 (997)
T ss_dssp TSCSHHHHHHHHHHHHHTTCEEEEEESCGGGHHHHHHHHHTTC--CCEEEECSSCE
T ss_pred CCcHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHHHcCCCeEEEEeCCCc
Confidence 467876544455555567789999999998888888887764 678889999875
No 192
>1aba_A Glutaredoxin; electron transport; HET: MES; 1.45A {Enterobacteria phage T4} SCOP: c.47.1.1 PDB: 1aaz_A 1de1_A 1de2_A
Probab=58.07 E-value=21 Score=19.45 Aligned_cols=45 Identities=7% Similarity=-0.041 Sum_probs=30.3
Q ss_pred EEEEecc-----HHHHHHHHHHHhhcCCeEEEEeCC-----CChHHHHHHHHHHh
Q psy2046 42 VLIFSQF-----IFVLDILGHYMDIRGWRHLRLDGA-----TQVSSRQELIDEYN 86 (138)
Q Consensus 42 ~iif~~~-----~~~~~~l~~~l~~~g~~~~~i~g~-----~~~~~R~~~~~~F~ 86 (138)
++||+.. .-.......+|...|+++..++=. ..+..+.+..+...
T Consensus 2 v~iY~~~~~~~~Cp~C~~ak~~L~~~gi~y~~idI~~~~~~~~~~~~~~l~~~~g 56 (87)
T 1aba_A 2 FKVYGYDSNIHKCGPCDNAKRLLTVKKQPFEFINIMPEKGVFDDEKIAELLTKLG 56 (87)
T ss_dssp EEEEECCTTTSCCHHHHHHHHHHHHTTCCEEEEESCSBTTBCCHHHHHHHHHHHT
T ss_pred EEEEEeCCCCCcCccHHHHHHHHHHcCCCEEEEEeeccccccCHHHHHHHHHHhC
Confidence 5566543 346788889999999998887765 45555555555543
No 193
>3kto_A Response regulator receiver protein; PSI-II,structural genomics, protein structure initiative; 1.98A {Pseudoalteromonas atlantica T6C} SCOP: c.23.1.0
Probab=57.49 E-value=26 Score=20.38 Aligned_cols=73 Identities=8% Similarity=-0.007 Sum_probs=38.6
Q ss_pred hhcCCeEEEEeCCCCh--HHHHHHHHHHhc-CCCceEEEEeccccc----cccCcCccCEEEEeCCCCCccchhHHHHHH
Q psy2046 60 DIRGWRHLRLDGATQV--SSRQELIDEYNR-DQDLFAFLLSTKAGG----LGINLTAADTVIIHDVDFNPYNDKQAEDRC 132 (138)
Q Consensus 60 ~~~g~~~~~i~g~~~~--~~R~~~~~~F~~-~~~~~vll~~~~~~~----~Gl~l~~~~~vi~~~~~~~~~~~~Q~~gR~ 132 (138)
.......+.++-.++. ..-.+.++..+. .+...+++++..... ..+.. +++. ++.-|+++....+++.++
T Consensus 47 ~~~~~dlvi~D~~l~~~~~~g~~~~~~l~~~~~~~~ii~~s~~~~~~~~~~~~~~-ga~~--~l~KP~~~~~l~~~i~~~ 123 (136)
T 3kto_A 47 ISDDAIGMIIEAHLEDKKDSGIELLETLVKRGFHLPTIVMASSSDIPTAVRAMRA-SAAD--FIEKPFIEHVLVHDVQQI 123 (136)
T ss_dssp CCTTEEEEEEETTGGGBTTHHHHHHHHHHHTTCCCCEEEEESSCCHHHHHHHHHT-TCSE--EEESSBCHHHHHHHHHHH
T ss_pred hccCCCEEEEeCcCCCCCccHHHHHHHHHhCCCCCCEEEEEcCCCHHHHHHHHHc-ChHH--heeCCCCHHHHHHHHHHH
Confidence 3334456666666665 555666666663 234445555533211 11211 2322 234577888888888877
Q ss_pred hhc
Q psy2046 133 HRV 135 (138)
Q Consensus 133 ~R~ 135 (138)
.+.
T Consensus 124 ~~~ 126 (136)
T 3kto_A 124 ING 126 (136)
T ss_dssp HHH
T ss_pred Hhc
Confidence 554
No 194
>1zh2_A KDP operon transcriptional regulatory protein KDPE; two-component system, gene regulation, transcription factor, KDP potassium transport system; 2.00A {Escherichia coli} SCOP: c.23.1.1 PDB: 1zh4_A
Probab=57.02 E-value=24 Score=19.79 Aligned_cols=91 Identities=16% Similarity=0.063 Sum_probs=45.8
Q ss_pred CCCeEEEEeccHHHHHHHHHHHhhcCCeEEEEeCCCChHHHHHHHHHHhcCCCceEEEEeccccc----cccCcCccCEE
Q psy2046 38 NGHRVLIFSQFIFVLDILGHYMDIRGWRHLRLDGATQVSSRQELIDEYNRDQDLFAFLLSTKAGG----LGINLTAADTV 113 (138)
Q Consensus 38 ~~~k~iif~~~~~~~~~l~~~l~~~g~~~~~i~g~~~~~~R~~~~~~F~~~~~~~vll~~~~~~~----~Gl~l~~~~~v 113 (138)
.+..+....+..+.+.. +.......+.++-.++...-.+.++..+..+...+++++..... ..+.. ++..
T Consensus 24 ~~~~v~~~~~~~~~~~~----~~~~~~dlvi~D~~l~~~~g~~~~~~l~~~~~~~ii~~s~~~~~~~~~~~~~~-g~~~- 97 (121)
T 1zh2_A 24 DGMRVFEAETLQRGLLE----AATRKPDLIILDLGLPDGDGIEFIRDLRQWSAVPVIVLSARSEESDKIAALDA-GADD- 97 (121)
T ss_dssp TTCEEEEESSHHHHHHH----HHHHCCSEEEEESEETTEEHHHHHHHHHTTCCCCEEEEESCCSHHHHHHHHHH-TCSE-
T ss_pred CCCEEEEeCCHHHHHHH----HhcCCCCEEEEeCCCCCCcHHHHHHHHHhCCCCcEEEEECCCCHHHHHHHHhc-CCCe-
Confidence 34455444433333322 23345566777666654444555666554344445555533211 11111 2322
Q ss_pred EEeCCCCCccchhHHHHHHhhc
Q psy2046 114 IIHDVDFNPYNDKQAEDRCHRV 135 (138)
Q Consensus 114 i~~~~~~~~~~~~Q~~gR~~R~ 135 (138)
++.-|+++....+++.++.+.
T Consensus 98 -~l~Kp~~~~~l~~~i~~~~~~ 118 (121)
T 1zh2_A 98 -YLSKPFGIGELQARLRVALRR 118 (121)
T ss_dssp -EEESSCCHHHHHHHHHHHHHH
T ss_pred -EEeCCcCHHHHHHHHHHHHHh
Confidence 334577888888888877654
No 195
>3snk_A Response regulator CHEY-like protein; P-loop containing nucleoside triphosphate hydrolases, struct genomics; 2.02A {Mesorhizobium loti}
Probab=56.76 E-value=13 Score=21.76 Aligned_cols=28 Identities=14% Similarity=0.062 Sum_probs=17.9
Q ss_pred CeEEEEeccHHHHHHHHHHHhhcC-CeEE
Q psy2046 40 HRVLIFSQFIFVLDILGHYMDIRG-WRHL 67 (138)
Q Consensus 40 ~k~iif~~~~~~~~~l~~~l~~~g-~~~~ 67 (138)
.+++|.-+.......+...|...| +.+.
T Consensus 15 ~~ilivdd~~~~~~~l~~~L~~~g~~~v~ 43 (135)
T 3snk_A 15 KQVALFSSDPNFKRDVATRLDALAIYDVR 43 (135)
T ss_dssp EEEEEECSCHHHHHHHHHHHHHTSSEEEE
T ss_pred cEEEEEcCCHHHHHHHHHHHhhcCCeEEE
Confidence 356666666666677777776666 5443
No 196
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=56.59 E-value=35 Score=21.59 Aligned_cols=91 Identities=8% Similarity=0.041 Sum_probs=53.6
Q ss_pred cCchHHHHH-HHHHHhhh--CCCeEEEEeccHHHHHHHHHHHhhc-----CCeEEEEeCCCChHHHHHHHHHHhcCCCce
Q psy2046 21 ESGKLKKLD-EILPDLKK--NGHRVLIFSQFIFVLDILGHYMDIR-----GWRHLRLDGATQVSSRQELIDEYNRDQDLF 92 (138)
Q Consensus 21 ~s~K~~~l~-~ll~~~~~--~~~k~iif~~~~~~~~~l~~~l~~~-----g~~~~~i~g~~~~~~R~~~~~~F~~~~~~~ 92 (138)
-++|..... -++..+.. .+.+++|.+++..-...+.+.+... +..+..++|+.+..+.. ..... ...
T Consensus 50 GsGKT~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~---~~~~~--~~~ 124 (206)
T 1vec_A 50 GTGKSGAYLIPLLERLDLKKDNIQAMVIVPTRELALQVSQICIQVSKHMGGAKVMATTGGTNLRDDI---MRLDD--TVH 124 (206)
T ss_dssp SSTTHHHHHHHHHHHCCTTSCSCCEEEECSCHHHHHHHHHHHHHHTTTSSSCCEEEECSSSCHHHHH---HHTTS--CCS
T ss_pred CCchHHHHHHHHHHHhcccCCCeeEEEEeCcHHHHHHHHHHHHHHHhhcCCceEEEEeCCccHHHHH---HhcCC--CCC
Confidence 467775433 34443322 3458999999988777766666543 67788899988754432 22322 334
Q ss_pred EEEEeccccc-----cccCcCccCEEEEe
Q psy2046 93 AFLLSTKAGG-----LGINLTAADTVIIH 116 (138)
Q Consensus 93 vll~~~~~~~-----~Gl~l~~~~~vi~~ 116 (138)
++++++.... ..+++...+.+|+=
T Consensus 125 i~v~T~~~l~~~~~~~~~~~~~~~~lViD 153 (206)
T 1vec_A 125 VVIATPGRILDLIKKGVAKVDHVQMIVLD 153 (206)
T ss_dssp EEEECHHHHHHHHHTTCSCCTTCCEEEEE
T ss_pred EEEeCHHHHHHHHHcCCcCcccCCEEEEE
Confidence 5666654431 22345566666663
No 197
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae}
Probab=56.43 E-value=55 Score=27.44 Aligned_cols=54 Identities=15% Similarity=-0.007 Sum_probs=41.4
Q ss_pred cCchHHHHHHHHHHhhhCCCeEEEEeccHHHHHHHHHHHhhcCCeEEEEeCCCC
Q psy2046 21 ESGKLKKLDEILPDLKKNGHRVLIFSQFIFVLDILGHYMDIRGWRHLRLDGATQ 74 (138)
Q Consensus 21 ~s~K~~~l~~ll~~~~~~~~k~iif~~~~~~~~~l~~~l~~~g~~~~~i~g~~~ 74 (138)
-++|.....-.+......+.+++|-++.+.-.......+......+..++|+.+
T Consensus 209 GSGKTlva~l~i~~~l~~g~rvlvl~PtraLa~Q~~~~l~~~~~~VglltGd~~ 262 (1108)
T 3l9o_A 209 SAGKTVVAEYAIAQSLKNKQRVIYTSPIKALSNQKYRELLAEFGDVGLMTGDIT 262 (1108)
T ss_dssp SSHHHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHHTSSEEEECSSCB
T ss_pred CCChHHHHHHHHHHHHhcCCeEEEEcCcHHHHHHHHHHHHHHhCCccEEeCccc
Confidence 467877665555555567889999999998888888888776557888999876
No 198
>1fov_A Glutaredoxin 3, GRX3; active site disulfide, CIS Pro 53, electron transport; NMR {Escherichia coli} SCOP: c.47.1.1 PDB: 3grx_A*
Probab=56.31 E-value=20 Score=18.83 Aligned_cols=51 Identities=16% Similarity=0.133 Sum_probs=33.2
Q ss_pred eEEEEec-cHHHHHHHHHHHhhcCCeEEEEeCCCChHHHHHHHHHHhcCCCc
Q psy2046 41 RVLIFSQ-FIFVLDILGHYMDIRGWRHLRLDGATQVSSRQELIDEYNRDQDL 91 (138)
Q Consensus 41 k~iif~~-~~~~~~~l~~~l~~~g~~~~~i~g~~~~~~R~~~~~~F~~~~~~ 91 (138)
++++|+. .......+...|...|+++..++=...+..+.+..+.+.....+
T Consensus 2 ~i~~y~~~~C~~C~~~~~~l~~~~i~~~~~~i~~~~~~~~~~~~~~~~~~vP 53 (82)
T 1fov_A 2 NVEIYTKETCPYCHRAKALLSSKGVSFQELPIDGNAAKREEMIKRSGRTTVP 53 (82)
T ss_dssp CEEEEECSSCHHHHHHHHHHHHHTCCCEEEECTTCSHHHHHHHHHHSSCCSC
T ss_pred cEEEEECCCChhHHHHHHHHHHCCCCcEEEECCCCHHHHHHHHHHhCCCCcC
Confidence 4667754 34667888888888899988887665545555555555433333
No 199
>1tzj_A ACC deaminase, 1-aminocyclopropane-1-carboxylate deaminase; substrate, PLP, crystal, complex, hydrolase; HET: PLP; 1.99A {Pseudomonas SP} SCOP: c.79.1.1 PDB: 1rqx_A* 1tz2_A* 1tyz_A* 1tzk_A* 1tzm_A*
Probab=56.30 E-value=35 Score=23.95 Aligned_cols=66 Identities=12% Similarity=0.124 Sum_probs=46.4
Q ss_pred ccCchHHHHHHHHHHhhhCCCeEEE-E-eccHHHHHHHHHHHhhcCCeEEEEeC-CCChH-------HHHHHHHHH
Q psy2046 20 VESGKLKKLDEILPDLKKNGHRVLI-F-SQFIFVLDILGHYMDIRGWRHLRLDG-ATQVS-------SRQELIDEY 85 (138)
Q Consensus 20 ~~s~K~~~l~~ll~~~~~~~~k~ii-f-~~~~~~~~~l~~~l~~~g~~~~~i~g-~~~~~-------~R~~~~~~F 85 (138)
.-|-|...+..++.+..+.+.+.|| | ..+-+....++.+-...|+++..+-. ..+.. .+...++.|
T Consensus 47 ~gs~K~R~a~~~l~~a~~~g~~~vv~~GassGN~g~alA~~a~~~G~~~~iv~p~~~~~~~~~~~~~~k~~~~~~~ 122 (338)
T 1tzj_A 47 FGGNKTRKLEYLIPEALAQGCDTLVSIGGIQSNQTRQVAAVAAHLGMKCVLVQENWVNYSDAVYDRVGNIQMSRIL 122 (338)
T ss_dssp TCCHHHHHHHTTHHHHHHTTCCEEEEEEETTCHHHHHHHHHHHHHTCEEEEEEECCSSCCCTTTTTSHHHHHHHHT
T ss_pred CCchHHHHHHHHHHHHHHcCCCEEEEcCCchhHHHHHHHHHHHHhCCceEEEecCCCCccccccccCccHHHHHhC
Confidence 3577999888888877667766666 3 45557777888888888999766554 44332 277788877
No 200
>2xzl_A ATP-dependent helicase NAM7; hydrolase-RNA complex, NMD, RNA degradation, allosteric REGU; HET: ADP 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=56.18 E-value=28 Score=27.98 Aligned_cols=50 Identities=24% Similarity=0.311 Sum_probs=40.8
Q ss_pred CchHHHHHHHHHHhhh-CCCeEEEEeccHHHHHHHHHHHhhcCCeEEEEeC
Q psy2046 22 SGKLKKLDEILPDLKK-NGHRVLIFSQFIFVLDILGHYMDIRGWRHLRLDG 71 (138)
Q Consensus 22 s~K~~~l~~ll~~~~~-~~~k~iif~~~~~~~~~l~~~l~~~g~~~~~i~g 71 (138)
++|...+..++..+.. .+.++++.+.+...++.+.+.|.+.|..++.+.+
T Consensus 386 TGKT~~i~~~i~~l~~~~~~~ILv~a~tn~A~d~l~~rL~~~g~~ilR~g~ 436 (802)
T 2xzl_A 386 TGKTVTSATIVYHLSKIHKDRILVCAPSNVAVDHLAAKLRDLGLKVVRLTA 436 (802)
T ss_dssp SSHHHHHHHHHHHHHHHHCCCEEEEESSHHHHHHHHHHHHHTTCCEEECCC
T ss_pred CCHHHHHHHHHHHHHhCCCCeEEEEcCcHHHHHHHHHHHHhhCccEEeecc
Confidence 4788888888877655 5789999999999999999999888877666543
No 201
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=56.14 E-value=15 Score=24.55 Aligned_cols=32 Identities=19% Similarity=0.163 Sum_probs=25.7
Q ss_pred ccCchHHHHHHHHHHhhhCCCeEEEEeccHHH
Q psy2046 20 VESGKLKKLDEILPDLKKNGHRVLIFSQFIFV 51 (138)
Q Consensus 20 ~~s~K~~~l~~ll~~~~~~~~k~iif~~~~~~ 51 (138)
+.++|-..++.++......+.++++|......
T Consensus 37 MgsGKTT~lL~~a~r~~~~g~kVli~k~~~d~ 68 (214)
T 2j9r_A 37 MFSGKSEELIRRVRRTQFAKQHAIVFKPCIDN 68 (214)
T ss_dssp TTSCHHHHHHHHHHHHHHTTCCEEEEECC---
T ss_pred CCCcHHHHHHHHHHHHHHCCCEEEEEEeccCC
Confidence 35899999999999988899999999866543
No 202
>1z7w_A Cysteine synthase; transferase; HET: PLP; 2.20A {Arabidopsis thaliana} SCOP: c.79.1.1 PDB: 1z7y_A* 2isq_A*
Probab=56.09 E-value=49 Score=23.11 Aligned_cols=65 Identities=18% Similarity=0.095 Sum_probs=46.5
Q ss_pred cCchHHHHHHHHHHhhhCCC-----eEEEEeccHHHHHHHHHHHhhcCCeEEEEeCCCChHHHHHHHHHH
Q psy2046 21 ESGKLKKLDEILPDLKKNGH-----RVLIFSQFIFVLDILGHYMDIRGWRHLRLDGATQVSSRQELIDEY 85 (138)
Q Consensus 21 ~s~K~~~l~~ll~~~~~~~~-----k~iif~~~~~~~~~l~~~l~~~g~~~~~i~g~~~~~~R~~~~~~F 85 (138)
-|-|...+..++.+..+.+. ..||=..+-+....++.+-...|+++..+........+...++.|
T Consensus 43 GSfK~R~a~~~l~~a~~~G~~~~~~~~vv~assGN~g~alA~aa~~~G~~~~iv~p~~~~~~k~~~~~~~ 112 (322)
T 1z7w_A 43 SSVKDRIGFSMISDAEKKGLIKPGESVLIEPTSGNTGVGLAFTAAAKGYKLIITMPASMSTERRIILLAF 112 (322)
T ss_dssp SBTHHHHHHHHHHHHHHTTSCCTTTCEEEEECSSHHHHHHHHHHHHHTCEEEEEEETTSCHHHHHHHHHT
T ss_pred CchHHHHHHHHHHHHHHcCCCCCCCCEEEEeCCCHHHHHHHHHHHHcCCCEEEEeCCCCCHHHHHHHHHc
Confidence 45699888888877766664 344445556777888888888999977665544446677788877
No 203
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=56.02 E-value=45 Score=22.70 Aligned_cols=87 Identities=13% Similarity=0.033 Sum_probs=53.5
Q ss_pred ccCchHHHHHHHHHHhhhCCCeEEEEeccHHHHHHHHHHHhh----cCCeEEEEeCCCChHHHHHHHHHHhcCCCceEEE
Q psy2046 20 VESGKLKKLDEILPDLKKNGHRVLIFSQFIFVLDILGHYMDI----RGWRHLRLDGATQVSSRQELIDEYNRDQDLFAFL 95 (138)
Q Consensus 20 ~~s~K~~~l~~ll~~~~~~~~k~iif~~~~~~~~~l~~~l~~----~g~~~~~i~g~~~~~~R~~~~~~F~~~~~~~vll 95 (138)
.-++|.....-.+. ..+.+++|.++...-...+.+.+++ .+..+..++|+.+..+... .+.. ..+++
T Consensus 40 TGsGKT~~~~~~~~---~~~~~~liv~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~---~~i~v 110 (337)
T 2z0m_A 40 TGSGKTAAYAIPIL---ELGMKSLVVTPTRELTRQVASHIRDIGRYMDTKVAEVYGGMPYKAQIN---RVRN---ADIVV 110 (337)
T ss_dssp TTSSHHHHHHHHHH---HHTCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEEEECTTSCHHHHHH---HHTT---CSEEE
T ss_pred CCCcHHHHHHHHHH---hhcCCEEEEeCCHHHHHHHHHHHHHHhhhcCCcEEEEECCcchHHHHh---hcCC---CCEEE
Confidence 34678765544432 2367999999998887777777664 3578889999887654433 2322 34566
Q ss_pred Eeccccc-----cccCcCccCEEEE
Q psy2046 96 LSTKAGG-----LGINLTAADTVII 115 (138)
Q Consensus 96 ~~~~~~~-----~Gl~l~~~~~vi~ 115 (138)
+++.... ..+++...+.+|+
T Consensus 111 ~T~~~l~~~~~~~~~~~~~~~~iVi 135 (337)
T 2z0m_A 111 ATPGRLLDLWSKGVIDLSSFEIVII 135 (337)
T ss_dssp ECHHHHHHHHHTTSCCGGGCSEEEE
T ss_pred ECHHHHHHHHHcCCcchhhCcEEEE
Confidence 6655432 1234555566665
No 204
>1nsj_A PRAI, phosphoribosyl anthranilate isomerase; thermostability; 2.00A {Thermotoga maritima} SCOP: c.1.2.4 PDB: 1lbm_A 1dl3_A
Probab=55.44 E-value=42 Score=22.11 Aligned_cols=50 Identities=14% Similarity=0.087 Sum_probs=34.8
Q ss_pred HHHHHHHHHhhhCCCeEEEEeccHHHHHHHHHHHhhcCCeEEEEeCCCChHH
Q psy2046 26 KKLDEILPDLKKNGHRVLIFSQFIFVLDILGHYMDIRGWRHLRLDGATQVSS 77 (138)
Q Consensus 26 ~~l~~ll~~~~~~~~k~iif~~~~~~~~~l~~~l~~~g~~~~~i~g~~~~~~ 77 (138)
....++...+...-.++-||++.. .+.+.+.....++.++.+||..+++.
T Consensus 41 ~~a~~i~~~~~~~~~~VgVfvn~~--~~~i~~~~~~~~ld~vQLHG~e~~~~ 90 (205)
T 1nsj_A 41 EDARRISVELPPFVFRVGVFVNEE--PEKILDVASYVQLNAVQLHGEEPIEL 90 (205)
T ss_dssp HHHHHHHHHSCSSSEEEEEESSCC--HHHHHHHHHHHTCSEEEECSCCCHHH
T ss_pred HHHHHHHHhCCCCCCEEEEEeCCC--HHHHHHHHHhhCCCEEEECCCCCHHH
Confidence 444445444333346899999754 46777777778899999999887653
No 205
>3aay_A Putative thiosulfate sulfurtransferase; sulfurtranserase, structural genomics, PSI, structure initiative; 1.90A {Mycobacterium tuberculosis} PDB: 3aax_A 3hwi_A
Probab=55.04 E-value=26 Score=23.76 Aligned_cols=47 Identities=13% Similarity=0.111 Sum_probs=33.1
Q ss_pred HHHHHHHHh-hhCCCeEEEEeccHHHHHHHHHHHhh-cCCe-EEEEeCCC
Q psy2046 27 KLDEILPDL-KKNGHRVLIFSQFIFVLDILGHYMDI-RGWR-HLRLDGAT 73 (138)
Q Consensus 27 ~l~~ll~~~-~~~~~k~iif~~~~~~~~~l~~~l~~-~g~~-~~~i~g~~ 73 (138)
.+.+.+... ...++.+|+||..-.........|.. .|++ +..+.|+.
T Consensus 213 ~l~~~~~~~~~~~~~~iv~yC~~G~rs~~a~~~L~~~~G~~~v~~l~GG~ 262 (277)
T 3aay_A 213 ELAKLYADAGLDNSKETIAYCRIGERSSHTWFVLRELLGHQNVKNYDGSW 262 (277)
T ss_dssp HHHHHHHHHTCCTTSCEEEECSSHHHHHHHHHHHHTTSCCSCEEEESSHH
T ss_pred HHHHHHHHcCCCCCCCEEEEcCcHHHHHHHHHHHHHHcCCCcceeeCchH
Confidence 444555432 24567899999987777777778875 8985 77888864
No 206
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A*
Probab=54.86 E-value=34 Score=25.04 Aligned_cols=51 Identities=18% Similarity=0.164 Sum_probs=40.5
Q ss_pred cCchHHHHHHHHHHhhhCCCeEEEEeccHHHHHHHHHHHhhcCCe-EEEEeCCCC
Q psy2046 21 ESGKLKKLDEILPDLKKNGHRVLIFSQFIFVLDILGHYMDIRGWR-HLRLDGATQ 74 (138)
Q Consensus 21 ~s~K~~~l~~ll~~~~~~~~k~iif~~~~~~~~~l~~~l~~~g~~-~~~i~g~~~ 74 (138)
-++|.......+... +.+++|.++....+....+.+.+.+++ +..++|+.+
T Consensus 118 GsGKT~~~l~~i~~~---~~~~Lvl~P~~~L~~Q~~~~~~~~~~~~v~~~~g~~~ 169 (472)
T 2fwr_A 118 GSGKTHVAMAAINEL---STPTLIVVPTLALAEQWKERLGIFGEEYVGEFSGRIK 169 (472)
T ss_dssp TSCHHHHHHHHHHHH---CSCEEEEESSHHHHHHHHHHGGGGCGGGEEEBSSSCB
T ss_pred CCCHHHHHHHHHHHc---CCCEEEEECCHHHHHHHHHHHHhCCCcceEEECCCcC
Confidence 468877766666543 679999999988888888888888888 888888764
No 207
>2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay, zinc-finger, ATP-binding, metal-BIN UPF2, UPF1, helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A
Probab=54.79 E-value=35 Score=27.48 Aligned_cols=50 Identities=22% Similarity=0.274 Sum_probs=41.4
Q ss_pred CchHHHHHHHHHHhhh-CCCeEEEEeccHHHHHHHHHHHhhcCCeEEEEeC
Q psy2046 22 SGKLKKLDEILPDLKK-NGHRVLIFSQFIFVLDILGHYMDIRGWRHLRLDG 71 (138)
Q Consensus 22 s~K~~~l~~ll~~~~~-~~~k~iif~~~~~~~~~l~~~l~~~g~~~~~i~g 71 (138)
++|...+..++..+.. .+.++++-+++...++.+.+.+...|+++..+.+
T Consensus 382 TGKT~ti~~~i~~l~~~~~~~ilv~a~tn~A~~~l~~~l~~~g~~vvRlg~ 432 (800)
T 2wjy_A 382 TGKTVTSATIVYHLARQGNGPVLVCAPSNIAVDQLTEKIHQTGLKVVRLCA 432 (800)
T ss_dssp SCHHHHHHHHHHHHHTTCSSCEEEEESSHHHHHHHHHHHHTTTCCEEECCC
T ss_pred CCHHHHHHHHHHHHHHcCCCcEEEEcCcHHHHHHHHHHHHHhCcceEeecc
Confidence 4788888888887765 5789999999999999999999888887666543
No 208
>2xgj_A ATP-dependent RNA helicase DOB1; hydrolase-RNA complex, hydrolase, tramp, exosome, DEAD, nucleotide-binding; HET: ADP; 2.90A {Saccharomyces cerevisiae}
Probab=54.60 E-value=68 Score=26.60 Aligned_cols=54 Identities=15% Similarity=-0.007 Sum_probs=37.9
Q ss_pred cCchHHHHHHHHHHhhhCCCeEEEEeccHHHHHHHHHHHhhcCCeEEEEeCCCC
Q psy2046 21 ESGKLKKLDEILPDLKKNGHRVLIFSQFIFVLDILGHYMDIRGWRHLRLDGATQ 74 (138)
Q Consensus 21 ~s~K~~~l~~ll~~~~~~~~k~iif~~~~~~~~~l~~~l~~~g~~~~~i~g~~~ 74 (138)
-++|.....-.+......+.++++-++.+.-.......|......+..++|+.+
T Consensus 111 GSGKTlva~lai~~~l~~g~rvL~l~PtkaLa~Q~~~~l~~~~~~vglltGd~~ 164 (1010)
T 2xgj_A 111 SAGKTVVAEYAIAQSLKNKQRVIYTSPIKALSNQKYRELLAEFGDVGLMTGDIT 164 (1010)
T ss_dssp TSCHHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHHHSCEEEECSSCE
T ss_pred CCChHHHHHHHHHHHhccCCeEEEECChHHHHHHHHHHHHHHhCCEEEEeCCCc
Confidence 467876654444444566789999999987777776766654337788888775
No 209
>1f2d_A 1-aminocyclopropane-1-carboxylate deaminase; carbon-carbon L open twisted alpha/beta, lyase; HET: PLP; 2.00A {Williopsis saturnus} SCOP: c.79.1.1 PDB: 1j0e_A* 1j0d_A* 1j0c_A*
Probab=54.19 E-value=36 Score=24.00 Aligned_cols=66 Identities=17% Similarity=0.163 Sum_probs=48.2
Q ss_pred ccCchHHHHHHHHHHhhhCCCeEEEE--eccHHHHHHHHHHHhhcCCeEEEEe-CCCC-h---HH------HHHHHHHH
Q psy2046 20 VESGKLKKLDEILPDLKKNGHRVLIF--SQFIFVLDILGHYMDIRGWRHLRLD-GATQ-V---SS------RQELIDEY 85 (138)
Q Consensus 20 ~~s~K~~~l~~ll~~~~~~~~k~iif--~~~~~~~~~l~~~l~~~g~~~~~i~-g~~~-~---~~------R~~~~~~F 85 (138)
.-|-|...+..+|.+..+.+.+.||- ...-+....++.+-...|+++..+- ...+ . .+ +...++.|
T Consensus 47 ~Gs~K~R~a~~~l~~a~~~g~~~vv~~G~ssGN~g~alA~~a~~~G~~~~iv~p~~~~~~~~~~~~~~~~~k~~~~~~~ 125 (341)
T 1f2d_A 47 FGGNKLRKLEYIVPDIVEGDYTHLVSIGGRQSNQTRMVAALAAKLGKKCVLIQEDWVPIPEAEKDVYNRVGNIELSRIM 125 (341)
T ss_dssp TCCHHHHHHTTTHHHHHHSCCSEEEEEEETTCHHHHHHHHHHHHHTCEEEEEEECCSCCCGGGTTTTTTSHHHHHHHHT
T ss_pred CCchHHHHHHHHHHHHHHcCCCEEEEcCCcchHHHHHHHHHHHHhCCceEEEeccCCCccccccccccccccHHHHHhC
Confidence 46789999998888877777777775 5666778888888888899976654 4444 1 22 77777877
No 210
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=54.17 E-value=55 Score=23.17 Aligned_cols=71 Identities=8% Similarity=0.010 Sum_probs=45.1
Q ss_pred CeEEEEeccHHHHHHHHHHHhh----cCCeEEEEeCCCChHHHHHHHHHHhcCCCceEEEEeccccc-----cccCcCcc
Q psy2046 40 HRVLIFSQFIFVLDILGHYMDI----RGWRHLRLDGATQVSSRQELIDEYNRDQDLFAFLLSTKAGG-----LGINLTAA 110 (138)
Q Consensus 40 ~k~iif~~~~~~~~~l~~~l~~----~g~~~~~i~g~~~~~~R~~~~~~F~~~~~~~vll~~~~~~~-----~Gl~l~~~ 110 (138)
.+++|.+++..-+..+.+.++. .++.+..++|+.+..+..+ ....+ ..++++++.... ..+++...
T Consensus 102 ~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~---~~~~~--~~I~v~Tp~~l~~~l~~~~~~~~~~ 176 (417)
T 2i4i_A 102 PISLVLAPTRELAVQIYEEARKFSYRSRVRPCVVYGGADIGQQIR---DLERG--CHLLVATPGRLVDMMERGKIGLDFC 176 (417)
T ss_dssp CSEEEECSSHHHHHHHHHHHHHHHTTSSCCEEEECSSSCHHHHHH---HHTTC--CSEEEECHHHHHHHHHTTSBCCTTC
T ss_pred ccEEEECCcHHHHHHHHHHHHHHhCcCCceEEEEECCCCHHHHHH---HhhCC--CCEEEEChHHHHHHHHcCCcChhhC
Confidence 4799999999877766666654 4678889999887654433 33332 345666665432 12445566
Q ss_pred CEEEE
Q psy2046 111 DTVII 115 (138)
Q Consensus 111 ~~vi~ 115 (138)
+.+|+
T Consensus 177 ~~iVi 181 (417)
T 2i4i_A 177 KYLVL 181 (417)
T ss_dssp CEEEE
T ss_pred cEEEE
Confidence 66665
No 211
>3nvb_A Uncharacterized protein; protein FKBH, protein fkbhstructural genomics, PSI-2, protei structure initiative; 1.71A {Bacteroides fragilis} PDB: 3slr_A
Probab=54.17 E-value=37 Score=24.84 Aligned_cols=108 Identities=10% Similarity=0.044 Sum_probs=61.9
Q ss_pred HHHHHHHHHHhhhCCCeEEEEeccHHHHHHHHHHHh--------hcCCeEEEEeCCCChHHHHHHHHHHhcCCCceEEEE
Q psy2046 25 LKKLDEILPDLKKNGHRVLIFSQFIFVLDILGHYMD--------IRGWRHLRLDGATQVSSRQELIDEYNRDQDLFAFLL 96 (138)
Q Consensus 25 ~~~l~~ll~~~~~~~~k~iif~~~~~~~~~l~~~l~--------~~g~~~~~i~g~~~~~~R~~~~~~F~~~~~~~vll~ 96 (138)
...+.++|+.+.+.|-++-|-++... ..+...++ ..++.......+..++.=.+++++++-++...+++.
T Consensus 258 ypgv~e~L~~Lk~~Gi~laI~Snn~~--~~v~~~l~~~~~~~l~l~~~~~v~~~~KPKp~~l~~al~~Lgl~pee~v~VG 335 (387)
T 3nvb_A 258 FTEFQEWVKKLKNRGIIIAVCSKNNE--GKAKEPFERNPEMVLKLDDIAVFVANWENKADNIRTIQRTLNIGFDSMVFLD 335 (387)
T ss_dssp HHHHHHHHHHHHHTTCEEEEEEESCH--HHHHHHHHHCTTCSSCGGGCSEEEEESSCHHHHHHHHHHHHTCCGGGEEEEC
T ss_pred CHHHHHHHHHHHHCCCEEEEEcCCCH--HHHHHHHhhccccccCccCccEEEeCCCCcHHHHHHHHHHhCcCcccEEEEC
Confidence 45677788888888988877777654 23444443 356666666555555666678888875544433333
Q ss_pred eccccccccCcCccCEEEEeCCCCCccchhHHHHHHhhc
Q psy2046 97 STKAGGLGINLTAADTVIIHDVDFNPYNDKQAEDRCHRV 135 (138)
Q Consensus 97 ~~~~~~~Gl~l~~~~~vi~~~~~~~~~~~~Q~~gR~~R~ 135 (138)
.....-.... ....-|-..+.|.++..|.+...+.+..
T Consensus 336 Ds~~Di~aar-aalpgV~vi~~p~d~~~~~~~l~~~~~f 373 (387)
T 3nvb_A 336 DNPFERNMVR-EHVPGVTVPELPEDPGDYLEYLYTLNLF 373 (387)
T ss_dssp SCHHHHHHHH-HHSTTCBCCCCCSSGGGHHHHHHTTCTT
T ss_pred CCHHHHHHHH-hcCCCeEEEEcCcCHHHHHHHHhhcCcc
Confidence 2211000000 0111233345677899998888776543
No 212
>3cnb_A DNA-binding response regulator, MERR family; signal receiver domain, DNA binding protein, protein structu initiative, PSI-2; 2.00A {Colwellia psychrerythraea}
Probab=53.86 E-value=30 Score=20.03 Aligned_cols=92 Identities=9% Similarity=-0.078 Sum_probs=47.6
Q ss_pred CCCe-EEEEeccHHHHHHHHHHHhhcCCeEEEEeCCCChHHHHHHHHHHhc---CCCceEEEEeccccc----cccCcCc
Q psy2046 38 NGHR-VLIFSQFIFVLDILGHYMDIRGWRHLRLDGATQVSSRQELIDEYNR---DQDLFAFLLSTKAGG----LGINLTA 109 (138)
Q Consensus 38 ~~~k-~iif~~~~~~~~~l~~~l~~~g~~~~~i~g~~~~~~R~~~~~~F~~---~~~~~vll~~~~~~~----~Gl~l~~ 109 (138)
.+-. +..+.+..+.+. .+.......+.++-.++...-.+.++..+. .+...+++++..... ..+.. +
T Consensus 32 ~~~~~v~~~~~~~~a~~----~l~~~~~dlii~d~~l~~~~g~~~~~~l~~~~~~~~~~ii~~s~~~~~~~~~~~~~~-g 106 (143)
T 3cnb_A 32 FPYAKIKIAYNPFDAGD----LLHTVKPDVVMLDLMMVGMDGFSICHRIKSTPATANIIVIAMTGALTDDNVSRIVAL-G 106 (143)
T ss_dssp CTTCEEEEECSHHHHHH----HHHHTCCSEEEEETTCTTSCHHHHHHHHHTSTTTTTSEEEEEESSCCHHHHHHHHHT-T
T ss_pred cCccEEEEECCHHHHHH----HHHhcCCCEEEEecccCCCcHHHHHHHHHhCccccCCcEEEEeCCCCHHHHHHHHhc-C
Confidence 4555 444444333333 333445667777776665555566666664 234455555433211 11111 2
Q ss_pred cCEEEEeCCCCCccchhHHHHHHhhcC
Q psy2046 110 ADTVIIHDVDFNPYNDKQAEDRCHRVG 136 (138)
Q Consensus 110 ~~~vi~~~~~~~~~~~~Q~~gR~~R~G 136 (138)
+..+ +.-|.++....+++.++.+..
T Consensus 107 ~~~~--l~kP~~~~~l~~~i~~~~~~~ 131 (143)
T 3cnb_A 107 AETC--FGKPLNFTLLEKTIKQLVEQK 131 (143)
T ss_dssp CSEE--EESSCCHHHHHHHHHHHHHTT
T ss_pred CcEE--EeCCCCHHHHHHHHHHHHHhh
Confidence 3332 345778888888888876543
No 213
>3e4c_A Caspase-1; zymogen, inflammasome, ICE, IL-1B, innate immunity, apoptosis, hydrolase, protease protease; 2.05A {Homo sapiens}
Probab=53.21 E-value=56 Score=22.94 Aligned_cols=46 Identities=9% Similarity=0.067 Sum_probs=38.2
Q ss_pred eEEEEecc-----------HHHHHHHHHHHhhcCCeEEEEeCCCChHHHHHHHHHHhc
Q psy2046 41 RVLIFSQF-----------IFVLDILGHYMDIRGWRHLRLDGATQVSSRQELIDEYNR 87 (138)
Q Consensus 41 k~iif~~~-----------~~~~~~l~~~l~~~g~~~~~i~g~~~~~~R~~~~~~F~~ 87 (138)
-.||+.+. ..+.+.|.+.|+..|+.+. ++-..+..+-.+.+++|..
T Consensus 62 ~aLII~N~~f~~l~~R~G~~~Da~~L~~~f~~LGF~V~-~~~dlt~~em~~~l~~f~~ 118 (302)
T 3e4c_A 62 LALIICNEEFDSIPRRTGAEVDITGMTMLLQNLGYSVD-VKKNLTASDMTTELEAFAH 118 (302)
T ss_dssp EEEEEECCSCSSSCCCTTHHHHHHHHHHHHHHTTCEEE-EEESCCHHHHHHHHHHHHT
T ss_pred EEEEEECcCCCCCCCCCCcHHHHHHHHHHHHHCCCEEE-EeeCCCHHHHHHHHHHHHh
Confidence 47999887 5678999999999999964 5556888899999999953
No 214
>2obb_A Hypothetical protein; structural genomics, PSI-2, PR structure initiative, midwest center for structural genomic unknown function; 2.20A {Bacteroides thetaiotaomicron} SCOP: c.108.1.25
Probab=53.11 E-value=23 Score=21.91 Aligned_cols=48 Identities=21% Similarity=0.188 Sum_probs=34.1
Q ss_pred HHHHHHHHhhhCCCeEEEEeccH-HHHHHHHHHHhhcCCeEEEEeCCCC
Q psy2046 27 KLDEILPDLKKNGHRVLIFSQFI-FVLDILGHYMDIRGWRHLRLDGATQ 74 (138)
Q Consensus 27 ~l~~ll~~~~~~~~k~iif~~~~-~~~~~l~~~l~~~g~~~~~i~g~~~ 74 (138)
...+.|+.+.++|-+++|.+... .....+..+|.+.|+++..+....+
T Consensus 28 ~~~~al~~l~~~G~~iii~TgR~~~~~~~~~~~l~~~gi~~~~I~~n~P 76 (142)
T 2obb_A 28 FAVETLKLLQQEKHRLILWSVREGELLDEAIEWCRARGLEFYAANKDYP 76 (142)
T ss_dssp THHHHHHHHHHTTCEEEECCSCCHHHHHHHHHHHHTTTCCCSEESSSST
T ss_pred HHHHHHHHHHHCCCEEEEEeCCCcccHHHHHHHHHHcCCCeEEEEcCCc
Confidence 34566777778888888888754 4567788888888888766654433
No 215
>3cg4_A Response regulator receiver domain protein (CHEY-; structural genomics, unknown function; HET: MSE; 1.61A {Methanospirillum hungatei jf-1}
Probab=53.06 E-value=31 Score=20.01 Aligned_cols=92 Identities=10% Similarity=-0.069 Sum_probs=47.5
Q ss_pred CCeEEEEeccHHHHHHHHHHHhhcCCeEEEEeCCCChHHHHHHHHHHhc---CCCceEEEEeccccc-cccCcCccCEEE
Q psy2046 39 GHRVLIFSQFIFVLDILGHYMDIRGWRHLRLDGATQVSSRQELIDEYNR---DQDLFAFLLSTKAGG-LGINLTAADTVI 114 (138)
Q Consensus 39 ~~k~iif~~~~~~~~~l~~~l~~~g~~~~~i~g~~~~~~R~~~~~~F~~---~~~~~vll~~~~~~~-~Gl~l~~~~~vi 114 (138)
+-.+..+.+..+.+ ..+.......+.++-.++...-.+.++..+. .+...+++++..... .-.....+...-
T Consensus 31 g~~v~~~~~~~~a~----~~l~~~~~dlii~d~~l~~~~g~~~~~~l~~~~~~~~~pii~~s~~~~~~~~~~~~~~g~~~ 106 (142)
T 3cg4_A 31 GFHIISADSGGQCI----DLLKKGFSGVVLLDIMMPGMDGWDTIRAILDNSLEQGIAIVMLTAKNAPDAKMIGLQEYVVD 106 (142)
T ss_dssp TCEEEEESSHHHHH----HHHHTCCCEEEEEESCCSSSCHHHHHHHHHHTTCCTTEEEEEEECTTCCCCSSTTGGGGEEE
T ss_pred CeEEEEeCCHHHHH----HHHHhcCCCEEEEeCCCCCCCHHHHHHHHHhhcccCCCCEEEEECCCCHHHHHHHHhcCccE
Confidence 55555444333322 3334445677777766655445556666654 344555665543221 112222222333
Q ss_pred EeCCCCCccchhHHHHHHhh
Q psy2046 115 IHDVDFNPYNDKQAEDRCHR 134 (138)
Q Consensus 115 ~~~~~~~~~~~~Q~~gR~~R 134 (138)
++.-|.++....+++.++.+
T Consensus 107 ~l~kp~~~~~l~~~i~~~~~ 126 (142)
T 3cg4_A 107 YITKPFDNEDLIEKTTFFMG 126 (142)
T ss_dssp EEESSCCHHHHHHHHHHHHH
T ss_pred EEeCCCCHHHHHHHHHHHHH
Confidence 44557788888887777644
No 216
>3gt7_A Sensor protein; structural genomics, signal receiver domain, kinase, PSI-2, protein structure initiative; 2.30A {Syntrophus aciditrophicus SB}
Probab=52.95 E-value=34 Score=20.42 Aligned_cols=89 Identities=9% Similarity=-0.036 Sum_probs=42.1
Q ss_pred CCeEEEEeccHHHHHHHHHHHhhcCCeEEEEeCCCChHHHHHHHHHHhcC---CCceEEEEeccccc----cccCcCccC
Q psy2046 39 GHRVLIFSQFIFVLDILGHYMDIRGWRHLRLDGATQVSSRQELIDEYNRD---QDLFAFLLSTKAGG----LGINLTAAD 111 (138)
Q Consensus 39 ~~k~iif~~~~~~~~~l~~~l~~~g~~~~~i~g~~~~~~R~~~~~~F~~~---~~~~vll~~~~~~~----~Gl~l~~~~ 111 (138)
+-.+..+.+..+.+ ..+.......+.++-.++...-.+.++..+.. +...+++++..... ..+.. ++.
T Consensus 31 g~~v~~~~~~~~al----~~l~~~~~dlii~D~~l~~~~g~~~~~~lr~~~~~~~~pii~~s~~~~~~~~~~~~~~-g~~ 105 (154)
T 3gt7_A 31 GYQTEHVRNGREAV----RFLSLTRPDLIISDVLMPEMDGYALCRWLKGQPDLRTIPVILLTILSDPRDVVRSLEC-GAD 105 (154)
T ss_dssp TCEEEEESSHHHHH----HHHTTCCCSEEEEESCCSSSCHHHHHHHHHHSTTTTTSCEEEEECCCSHHHHHHHHHH-CCS
T ss_pred CCEEEEeCCHHHHH----HHHHhCCCCEEEEeCCCCCCCHHHHHHHHHhCCCcCCCCEEEEECCCChHHHHHHHHC-CCC
Confidence 44554444333322 23344455666776666555555556555532 33344554432211 11111 222
Q ss_pred EEEEeCCCCCccchhHHHHHHhh
Q psy2046 112 TVIIHDVDFNPYNDKQAEDRCHR 134 (138)
Q Consensus 112 ~vi~~~~~~~~~~~~Q~~gR~~R 134 (138)
. ++.-|+++....+++.++.+
T Consensus 106 ~--~l~KP~~~~~l~~~i~~~l~ 126 (154)
T 3gt7_A 106 D--FITKPCKDVVLASHVKRLLS 126 (154)
T ss_dssp E--EEESSCCHHHHHHHHHHHHH
T ss_pred E--EEeCCCCHHHHHHHHHHHHH
Confidence 2 23446777777777766643
No 217
>4e5s_A MCCFLIKE protein (BA_5613); structural genomics, center for structural genomi infectious diseases, csgid, serine peptidase S66; 1.95A {Bacillus anthracis}
Probab=52.39 E-value=60 Score=23.06 Aligned_cols=68 Identities=22% Similarity=0.226 Sum_probs=39.6
Q ss_pred hCCCeEEEEecc-------HHHHHHHHHHHhhcCCeEEEEe------C--CCChHHHHHHHHHHhcCCCceEEEEecccc
Q psy2046 37 KNGHRVLIFSQF-------IFVLDILGHYMDIRGWRHLRLD------G--ATQVSSRQELIDEYNRDQDLFAFLLSTKAG 101 (138)
Q Consensus 37 ~~~~k~iif~~~-------~~~~~~l~~~l~~~g~~~~~i~------g--~~~~~~R~~~~~~F~~~~~~~vll~~~~~~ 101 (138)
+.|+++-|.+.+ ...++...+.|+..|+.+..-. + +-+.++|.+-+.++-.++.++.++. ..|
T Consensus 10 ~~GD~I~ivaPS~~~~~~~~~~~~~~~~~L~~~G~~v~~~~~~~~~~~~~ag~d~~Ra~dL~~a~~Dp~i~aI~~--~rG 87 (331)
T 4e5s_A 10 KKGDEIRVISPSCSLSIVSTENRRLAVKRLTELGFHVTFSTHAEEIDRFASSSISSRVQDLHEAFRDPNVKAILT--TLG 87 (331)
T ss_dssp CTTCEEEEECSSSCGGGSCHHHHHHHHHHHHHTTCEEEECTTTTCCCTTSSCCHHHHHHHHHHHHHCTTEEEEEE--SCC
T ss_pred CCcCEEEEEeCCCCccccCHHHHHHHHHHHHhCCCEEEECCchhcccCccCCCHHHHHHHHHHHhhCCCCCEEEE--ccc
Confidence 457777777655 2345566667777788765321 1 1355667666655555567765553 345
Q ss_pred ccccC
Q psy2046 102 GLGIN 106 (138)
Q Consensus 102 ~~Gl~ 106 (138)
|.|.+
T Consensus 88 G~g~~ 92 (331)
T 4e5s_A 88 GYNSN 92 (331)
T ss_dssp CSCGG
T ss_pred cccHH
Confidence 55544
No 218
>3e2i_A Thymidine kinase; Zn-binding, ATP-binding, DNA synthesis, nucleotide-B transferase; HET: MSE; 2.01A {Staphylococcus aureus}
Probab=51.90 E-value=23 Score=23.84 Aligned_cols=33 Identities=24% Similarity=0.125 Sum_probs=25.1
Q ss_pred ccCchHHHHHHHHHHhhhCCCeEEEEeccHHHH
Q psy2046 20 VESGKLKKLDEILPDLKKNGHRVLIFSQFIFVL 52 (138)
Q Consensus 20 ~~s~K~~~l~~ll~~~~~~~~k~iif~~~~~~~ 52 (138)
+.++|-..|+..+......+.+++||......-
T Consensus 37 M~sGKTT~Llr~~~r~~~~g~kvli~kp~~D~R 69 (219)
T 3e2i_A 37 MFSGKSEELIRRLRRGIYAKQKVVVFKPAIDDR 69 (219)
T ss_dssp TTSCHHHHHHHHHHHHHHTTCCEEEEEEC----
T ss_pred CCCCHHHHHHHHHHHHHHcCCceEEEEeccCCc
Confidence 468999999999888888889999998766543
No 219
>2wlr_A Putative thiosulfate sulfurtransferase YNJE; rhodanese domains; HET: EPE; 1.45A {Escherichia coli} PDB: 2wlx_A* 3ipo_A* 3ipp_A
Probab=51.74 E-value=42 Score=24.49 Aligned_cols=48 Identities=17% Similarity=0.309 Sum_probs=33.8
Q ss_pred HHHHHHHHHh-hhCCCeEEEEeccHHHHHHHHHHHhhcCCe-EEEEeCCC
Q psy2046 26 KKLDEILPDL-KKNGHRVLIFSQFIFVLDILGHYMDIRGWR-HLRLDGAT 73 (138)
Q Consensus 26 ~~l~~ll~~~-~~~~~k~iif~~~~~~~~~l~~~l~~~g~~-~~~i~g~~ 73 (138)
..+.+.+... ...++.+|+||..-.........|...|++ +..+.|+.
T Consensus 189 ~~l~~~~~~~gi~~~~~ivvyC~~G~~a~~~~~~L~~~G~~~v~~l~Gg~ 238 (423)
T 2wlr_A 189 EQLKAMLAKHGIRHDTTVILYGRDVYAAARVAQIMLYAGVKDVRLLDGGW 238 (423)
T ss_dssp HHHHHHHHHTTCCTTSEEEEECSSHHHHHHHHHHHHHHTCSCEEEETTTH
T ss_pred HHHHHHHHHcCCCCCCeEEEECCCchHHHHHHHHHHHcCCCCeEEECCCH
Confidence 3444455432 234678999999877777888889989984 77788763
No 220
>3h11_A CAsp8 and FADD-like apoptosis regulator; cell death, apoptosis, caspase, alternative splicing, HOST- virus interaction, polymorphism, cytoplasm, disease mutation; 1.90A {Homo sapiens} PDB: 3h13_A
Probab=51.47 E-value=18 Score=25.05 Aligned_cols=46 Identities=9% Similarity=0.042 Sum_probs=39.1
Q ss_pred eEEEEeccHHHHHHHHHHHhhcCCeEEEEeCCCChHHHHHHHHHHhc
Q psy2046 41 RVLIFSQFIFVLDILGHYMDIRGWRHLRLDGATQVSSRQELIDEYNR 87 (138)
Q Consensus 41 k~iif~~~~~~~~~l~~~l~~~g~~~~~i~g~~~~~~R~~~~~~F~~ 87 (138)
..|||.+...+.+.|...|+..|+.+. ++...+..+-.+.+++|..
T Consensus 45 ~~LIinn~~~D~~~L~~~f~~LgF~V~-~~~dlt~~em~~~l~~~~~ 90 (272)
T 3h11_A 45 ICLIIDCIGNETELLRDTFTSLGYEVQ-KFLHLSMHGISQILGQFAC 90 (272)
T ss_dssp EEEEEESSCCCCSHHHHHHHHHTEEEE-EEESCBHHHHHHHHHHHHT
T ss_pred EEEEECCchHHHHHHHHHHHHCCCEEE-EeeCCCHHHHHHHHHHHHh
Confidence 679999998889999999999999864 4556788888889999864
No 221
>1urh_A 3-mercaptopyruvate sulfurtransferase; rhodanese; 2.8A {Escherichia coli} SCOP: c.46.1.2 c.46.1.2
Probab=51.23 E-value=13 Score=25.40 Aligned_cols=38 Identities=8% Similarity=-0.068 Sum_probs=31.0
Q ss_pred hCCCeEEEEeccHHHHHHHHHHHhhcCCe-EEEEeCCCC
Q psy2046 37 KNGHRVLIFSQFIFVLDILGHYMDIRGWR-HLRLDGATQ 74 (138)
Q Consensus 37 ~~~~k~iif~~~~~~~~~l~~~l~~~g~~-~~~i~g~~~ 74 (138)
..++++|+||..-.........|...|++ +..+.|+..
T Consensus 228 ~~~~~ivv~C~~G~rs~~a~~~L~~~G~~~v~~~~GG~~ 266 (280)
T 1urh_A 228 SYDKPIIVSCGSGVTAAVVLLALATLDVPNVKLYDGAWS 266 (280)
T ss_dssp CSSSCEEEECCSSSTHHHHHHHHHHTTCSSCEEECCSCC
T ss_pred CCCCCEEEECChHHHHHHHHHHHHHcCCCCceeeCChHH
Confidence 34678999999877777788888889995 788899876
No 222
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=51.09 E-value=78 Score=23.97 Aligned_cols=92 Identities=12% Similarity=0.012 Sum_probs=52.1
Q ss_pred ccCchHHH-HHHHHHHhhhC------CCeEEEEeccHHHHHHHHHHHhhc--------CCeEEEEeCCCChHHHHHHHHH
Q psy2046 20 VESGKLKK-LDEILPDLKKN------GHRVLIFSQFIFVLDILGHYMDIR--------GWRHLRLDGATQVSSRQELIDE 84 (138)
Q Consensus 20 ~~s~K~~~-l~~ll~~~~~~------~~k~iif~~~~~~~~~l~~~l~~~--------g~~~~~i~g~~~~~~R~~~~~~ 84 (138)
.-++|... +.-++..+... +.++||.+++..-+..+.+.+... .+.+..+.|+.+...... .
T Consensus 69 TGsGKTl~~~lpil~~l~~~~~~~~~~~~~lvl~Ptr~La~Q~~~~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~---~ 145 (579)
T 3sqw_A 69 TGTGKTFAFLIPIFQHLINTKFDSQYMVKAVIVAPTRDLALQIEAEVKKIHDMNYGLKKYACVSLVGGTDFRAAMN---K 145 (579)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTSSTTSCCEEEECSSHHHHHHHHHHHHHHHHHCGGGTTSCEEEECTTSCHHHHHH---H
T ss_pred CCcHHHHHHHHHHHHHHHhccccccCCCeEEEEcchHHHHHHHHHHHHHHHhhcccccceEEEEEECCccHHHHHH---H
Confidence 44678664 33344433322 348999999998877776666652 356778888876544333 3
Q ss_pred HhcCCCceEEEEecccccc------ccCcCccCEEEE
Q psy2046 85 YNRDQDLFAFLLSTKAGGL------GINLTAADTVII 115 (138)
Q Consensus 85 F~~~~~~~vll~~~~~~~~------Gl~l~~~~~vi~ 115 (138)
+... ...++++++...-. ...+...+.+|+
T Consensus 146 l~~~-~~~IlV~Tp~~l~~~l~~~~~~~~~~~~~lVi 181 (579)
T 3sqw_A 146 MNKL-RPNIVIATPGRLIDVLEKYSNKFFRFVDYKVL 181 (579)
T ss_dssp HHHH-CCSEEEECHHHHHHHHHHHHHHHCTTCCEEEE
T ss_pred HhcC-CCCEEEECHHHHHHHHHhccccccccCCEEEE
Confidence 3222 23456666554321 234455666665
No 223
>2yv1_A Succinyl-COA ligase [ADP-forming] subunit alpha; COA-binding domain, structural genomics, NPPSFA; 1.70A {Methanocaldococcus jannaschii}
Probab=50.07 E-value=62 Score=22.50 Aligned_cols=62 Identities=18% Similarity=0.202 Sum_probs=45.9
Q ss_pred eEEEEeccHHHHHHHHHHHhhcCCe--EEEEeCCCC--hHHHHHHHHHHhcCCCceEEEEeccccc
Q psy2046 41 RVLIFSQFIFVLDILGHYMDIRGWR--HLRLDGATQ--VSSRQELIDEYNRDQDLFAFLLSTKAGG 102 (138)
Q Consensus 41 k~iif~~~~~~~~~l~~~l~~~g~~--~~~i~g~~~--~~~R~~~~~~F~~~~~~~vll~~~~~~~ 102 (138)
++=+++++-.....+..++...|+. ...-.|+.. ...=.+.++.|.+++..+++++.....+
T Consensus 152 ~va~vSqSG~l~~~~~~~~~~~g~G~s~~vs~G~~~~~~~~~~d~l~~~~~D~~T~~I~l~~E~~g 217 (294)
T 2yv1_A 152 SVGMVSRSGTLTYEIAHQIKKAGFGVSTCVGIGGDPIVGLRYKEVLDLFEKDDETEAIVMIGEIGG 217 (294)
T ss_dssp EEEEEESCSHHHHHHHHHHHHTTCCEEEEEECCSSSSCSSCHHHHHHHHHTCTTCSEEEEEEESSS
T ss_pred CEEEEECCHHHHHHHHHHHHhCCCCeEEEEeeCCCCCCCCCHHHHHHHHhcCCCCCEEEEEEeeCC
Confidence 5778888888888888888877554 445555554 3466789999998888888888776654
No 224
>4h1h_A LMO1638 protein; MCCF-like, csgid, MCCF homolog, structural genomics, niaid, institute of allergy and infectious diseases; 2.46A {Listeria monocytogenes}
Probab=49.99 E-value=65 Score=22.76 Aligned_cols=68 Identities=22% Similarity=0.224 Sum_probs=40.3
Q ss_pred hCCCeEEEEeccH-------HHHHHHHHHHhhcCCeEEEEe--------CCCChHHHHHHHHHHhcCCCceEEEEecccc
Q psy2046 37 KNGHRVLIFSQFI-------FVLDILGHYMDIRGWRHLRLD--------GATQVSSRQELIDEYNRDQDLFAFLLSTKAG 101 (138)
Q Consensus 37 ~~~~k~iif~~~~-------~~~~~l~~~l~~~g~~~~~i~--------g~~~~~~R~~~~~~F~~~~~~~vll~~~~~~ 101 (138)
+.|+++-|.+++. ..++.-.+.|+..|+.+..-. -+-+.++|.+-+.++-.++.++.++. ..|
T Consensus 10 ~~GD~I~ivaPSs~~~~~~~~~~~~~~~~L~~~G~~v~~~~~~~~~~~~~agtd~~Ra~dL~~a~~Dp~i~aI~~--~rG 87 (327)
T 4h1h_A 10 KQGDEIRIIAPSRSIGIMADNQVEIAVNRLTDMGFKVTFGEHVAEMDCMMSSSIRSRVADIHEAFNDSSVKAILT--VIG 87 (327)
T ss_dssp CTTCEEEEECSSSCGGGSCHHHHHHHHHHHHHTTCEEEECTTTTCCCTTSSCCHHHHHHHHHHHHHCTTEEEEEE--SCC
T ss_pred CCCCEEEEEeCCCCcCccCHHHHHHHHHHHHhCCCEEEECcchhhccCcccCCHHHHHHHHHHHhhCCCCCEEEE--cCC
Confidence 4577888887652 345666677787887765311 11255667665555555567765553 356
Q ss_pred ccccC
Q psy2046 102 GLGIN 106 (138)
Q Consensus 102 ~~Gl~ 106 (138)
|.|.+
T Consensus 88 G~g~~ 92 (327)
T 4h1h_A 88 GFNSN 92 (327)
T ss_dssp CSCGG
T ss_pred chhHH
Confidence 66544
No 225
>2jba_A Phosphate regulon transcriptional regulatory PROT; transcription factor, sensory transduction, phosphate regula transcription regulation; 1.45A {Escherichia coli} PDB: 2jba_B 1b00_A 2iyn_A 2jb9_A 1zes_A
Probab=49.99 E-value=33 Score=19.38 Aligned_cols=75 Identities=16% Similarity=0.130 Sum_probs=40.0
Q ss_pred HHhhcCCeEEEEeCCCChHHHHHHHHHHhcC---CCceEEEEeccc----cccccCcCccCEEEEeCCCCCccchhHHHH
Q psy2046 58 YMDIRGWRHLRLDGATQVSSRQELIDEYNRD---QDLFAFLLSTKA----GGLGINLTAADTVIIHDVDFNPYNDKQAED 130 (138)
Q Consensus 58 ~l~~~g~~~~~i~g~~~~~~R~~~~~~F~~~---~~~~vll~~~~~----~~~Gl~l~~~~~vi~~~~~~~~~~~~Q~~g 130 (138)
.+.......+.++-.++...-.+.++..+.. +...+++++... ...++.. ++... +.-|+++....+++.
T Consensus 41 ~~~~~~~dlvi~D~~l~~~~g~~~~~~l~~~~~~~~~~ii~~s~~~~~~~~~~~~~~-ga~~~--l~Kp~~~~~l~~~i~ 117 (127)
T 2jba_A 41 QLNEPWPDLILLAWMLPGGSGIQFIKHLRRESMTRDIPVVMLTARGEEEDRVRGLET-GADDC--ITKPFSPKELVARIK 117 (127)
T ss_dssp TCSSSCCSEEEEESEETTEEHHHHHHHHHTSTTTTTSCEEEEEETTHHHHHHTTCCC-SCSEE--EEESCCHHHHHHHHH
T ss_pred HHhccCCCEEEEecCCCCCCHHHHHHHHHhCcccCCCCEEEEeCCCCHHHHHHHHhc-CCCeE--EeCCCCHHHHHHHHH
Confidence 3344445566666555544455566666542 344555554332 1233332 23332 234778888888888
Q ss_pred HHhhc
Q psy2046 131 RCHRV 135 (138)
Q Consensus 131 R~~R~ 135 (138)
++.+.
T Consensus 118 ~~~~~ 122 (127)
T 2jba_A 118 AVMRR 122 (127)
T ss_dssp HHHHC
T ss_pred HHHhc
Confidence 77653
No 226
>3l6b_A Serine racemase; pyridoxal phosphate, PLP, isomerase; HET: PLP; 1.50A {Homo sapiens} SCOP: c.79.1.0 PDB: 3l6r_A* 3hmk_A* 3l6c_A*
Probab=49.97 E-value=53 Score=23.30 Aligned_cols=66 Identities=12% Similarity=0.022 Sum_probs=44.9
Q ss_pred ccCchHHHHHHHHHHhhhC----CCeEEEEeccHHHHHHHHHHHhhcCCeEEEEeCCCChHHHHHHHHHH
Q psy2046 20 VESGKLKKLDEILPDLKKN----GHRVLIFSQFIFVLDILGHYMDIRGWRHLRLDGATQVSSRQELIDEY 85 (138)
Q Consensus 20 ~~s~K~~~l~~ll~~~~~~----~~k~iif~~~~~~~~~l~~~l~~~g~~~~~i~g~~~~~~R~~~~~~F 85 (138)
.-|-|......++....+. +.+.||=+..-+....++.+-...|+++..+-....+..+...++.|
T Consensus 52 tGSfK~Rga~~~i~~a~~~g~~~~~~~vv~~SsGNhg~a~A~aa~~~G~~~~iv~p~~~~~~k~~~~~~~ 121 (346)
T 3l6b_A 52 TGSFKIRGALNAVRSLVPDALERKPKAVVTHSSGNHGQALTYAAKLEGIPAYIVVPQTAPDCKKLAIQAY 121 (346)
T ss_dssp GGBTHHHHHHHHHHTTC-----CCCSCEEEECSSHHHHHHHHHHHHTTCCEEEEEETTSCHHHHHHHHHT
T ss_pred CCCcHHHHHHHHHHHHHHhccccCCCEEEEeCCCHHHHHHHHHHHHhCCCEEEEECCCCCHHHHHHHHHC
Confidence 4567888888888776542 33334444456777888888888899977665555556777788877
No 227
>1oi7_A Succinyl-COA synthetase alpha chain; SCS, ligase, riken structural genomics/proteomics initiative, RSGI, structural genomics; 1.23A {Thermus thermophilus} SCOP: c.2.1.8 c.23.4.1
Probab=49.74 E-value=62 Score=22.42 Aligned_cols=62 Identities=21% Similarity=0.160 Sum_probs=46.3
Q ss_pred eEEEEeccHHHHHHHHHHHhhcCCe--EEEEeCCCC--hHHHHHHHHHHhcCCCceEEEEeccccc
Q psy2046 41 RVLIFSQFIFVLDILGHYMDIRGWR--HLRLDGATQ--VSSRQELIDEYNRDQDLFAFLLSTKAGG 102 (138)
Q Consensus 41 k~iif~~~~~~~~~l~~~l~~~g~~--~~~i~g~~~--~~~R~~~~~~F~~~~~~~vll~~~~~~~ 102 (138)
++=+++++-.....+..++...|+. ...-.|+.. ...=.+.++.|.+++..+++++.....+
T Consensus 146 ~va~vsqSG~l~~~~~~~~~~~g~G~s~~vs~G~~~~~~~~~~d~l~~~~~D~~t~~I~l~~E~~~ 211 (288)
T 1oi7_A 146 RVGIISRSGTLTYEAAAALSQAGLGTTTTVGIGGDPVIGTTFKDLLPLFNEDPETEAVVLIGEIGG 211 (288)
T ss_dssp EEEEEESCHHHHHHHHHHHHHTTCCEEEEEECCSSSCCSSCHHHHHHHHHTCTTCCEEEEEECSSS
T ss_pred CEEEEECCHHHHHHHHHHHHhCCCCEEEEEeeCCCcCCCCCHHHHHHHHhcCCCCCEEEEEEeeCC
Confidence 5778888888888888888876554 445555554 3467789999998888888888766554
No 228
>1dc7_A NTRC, nitrogen regulation protein; receiver domain, phosphorylation, signal transduction, conformational rearrangement; NMR {Salmonella typhimurium} SCOP: c.23.1.1 PDB: 1j56_A 1krw_A 1krx_A 1ntr_A 1dc8_A*
Probab=49.62 E-value=25 Score=19.75 Aligned_cols=79 Identities=9% Similarity=-0.005 Sum_probs=38.6
Q ss_pred HhhcCCeEEEEeCCCChHHHHHHHHHHhc-CCCceEEEEecccc-ccccCcCccCEEEEeCCCCCccchhHHHHHHhhcC
Q psy2046 59 MDIRGWRHLRLDGATQVSSRQELIDEYNR-DQDLFAFLLSTKAG-GLGINLTAADTVIIHDVDFNPYNDKQAEDRCHRVG 136 (138)
Q Consensus 59 l~~~g~~~~~i~g~~~~~~R~~~~~~F~~-~~~~~vll~~~~~~-~~Gl~l~~~~~vi~~~~~~~~~~~~Q~~gR~~R~G 136 (138)
+.......+.++-.++...-.+.++..+. .+...+++++.... ..-...-.+...-++.-|+++....+++.++.+..
T Consensus 43 ~~~~~~dlvi~d~~~~~~~g~~~~~~l~~~~~~~~ii~~s~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~i~~~~~~~ 122 (124)
T 1dc7_A 43 LASKTPDVLLSDIRMPGMDGLALLKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAISHY 122 (124)
T ss_dssp SSSCCCSCEEECSCSSHHHHCSTHHHHHHHCTTSCCCCBCCSTTSTTTTSSCTTCCCCCBCSSCCHHHHHHHHHHHHHHT
T ss_pred HhcCCCCEEEEeeecCCCCHHHHHHHHHhhCCCCCEEEEecCCCHHHHHHHHhcCcceEeeCCCCHHHHHHHHHHHHHhh
Confidence 34444566666666654433334444432 22333444443221 11111111111223456788888888888887655
Q ss_pred C
Q psy2046 137 Q 137 (138)
Q Consensus 137 Q 137 (138)
|
T Consensus 123 ~ 123 (124)
T 1dc7_A 123 Q 123 (124)
T ss_dssp C
T ss_pred c
Confidence 4
No 229
>3aay_A Putative thiosulfate sulfurtransferase; sulfurtranserase, structural genomics, PSI, structure initiative; 1.90A {Mycobacterium tuberculosis} PDB: 3aax_A 3hwi_A
Probab=49.56 E-value=35 Score=23.08 Aligned_cols=47 Identities=17% Similarity=0.272 Sum_probs=30.9
Q ss_pred HHHHHHHHHh-hhCCCeEEEEeccHH-HHHHHHHHHhhcCCe-EEEEeCC
Q psy2046 26 KKLDEILPDL-KKNGHRVLIFSQFIF-VLDILGHYMDIRGWR-HLRLDGA 72 (138)
Q Consensus 26 ~~l~~ll~~~-~~~~~k~iif~~~~~-~~~~l~~~l~~~g~~-~~~i~g~ 72 (138)
..+.+.+..+ ...+..+||||.... ........|+..|+. +..+.|+
T Consensus 63 ~~~~~~~~~~gi~~~~~vvvyc~~g~~~s~~a~~~L~~~G~~~v~~l~GG 112 (277)
T 3aay_A 63 QQFSKLLSERGIANEDTVILYGGNNNWFAAYAYWYFKLYGHEKVKLLDGG 112 (277)
T ss_dssp HHHHHHHHHHTCCTTSEEEEECSGGGHHHHHHHHHHHHTTCCSEEEETTH
T ss_pred HHHHHHHHHcCCCCCCeEEEECCCCCchHHHHHHHHHHcCCCcEEEecCC
Confidence 3455555543 244678999998743 356677788888984 6677775
No 230
>2eg4_A Probable thiosulfate sulfurtransferase; structural genomics, NPPSFA, national Pro protein structural and functional analyses; 1.70A {Thermus thermophilus} PDB: 2eg3_A
Probab=49.23 E-value=32 Score=22.65 Aligned_cols=44 Identities=14% Similarity=0.112 Sum_probs=30.5
Q ss_pred HHHHHHHHhhhCCCeEEEEeccHH-HHHHHHHHHhhcCCe-EEEEeCC
Q psy2046 27 KLDEILPDLKKNGHRVLIFSQFIF-VLDILGHYMDIRGWR-HLRLDGA 72 (138)
Q Consensus 27 ~l~~ll~~~~~~~~k~iif~~~~~-~~~~l~~~l~~~g~~-~~~i~g~ 72 (138)
.+.+.+..+ ..+.++|+||.... ........|. .|+. +..+.|+
T Consensus 50 ~~~~~~~~l-~~~~~ivvyc~~g~~~s~~a~~~L~-~G~~~v~~l~GG 95 (230)
T 2eg4_A 50 GLTELFQTL-GLRSPVVLYDEGLTSRLCRTAFFLG-LGGLEVQLWTEG 95 (230)
T ss_dssp HHHHHHHHT-TCCSSEEEECSSSCHHHHHHHHHHH-HTTCCEEEECSS
T ss_pred HHHHHHHhc-CCCCEEEEEcCCCCccHHHHHHHHH-cCCceEEEeCCC
Confidence 344444443 22678999998766 6677788888 9996 6778876
No 231
>1vlj_A NADH-dependent butanol dehydrogenase; TM0820, structural G JCSG, protein structure initiative, PSI, joint center for S genomics; HET: NAP; 1.78A {Thermotoga maritima} SCOP: e.22.1.2
Probab=48.32 E-value=76 Score=23.07 Aligned_cols=65 Identities=18% Similarity=0.278 Sum_probs=41.6
Q ss_pred CchHHHHHHHHHHhhhCCCeEEEEec-c-HH---HHHHHHHHHhhcCCeEEEEeCC---CChHHHHHHHHHHhcC
Q psy2046 22 SGKLKKLDEILPDLKKNGHRVLIFSQ-F-IF---VLDILGHYMDIRGWRHLRLDGA---TQVSSRQELIDEYNRD 88 (138)
Q Consensus 22 s~K~~~l~~ll~~~~~~~~k~iif~~-~-~~---~~~~l~~~l~~~g~~~~~i~g~---~~~~~R~~~~~~F~~~ 88 (138)
.+.+..+.+.++.+ ..+|++|.+. . .. ..+.+.+.|++.|+.+..+.|. .+.+.-.+.++.++..
T Consensus 28 ~g~l~~l~~~l~~~--g~~r~liVtd~~~~~~~g~~~~v~~~L~~~g~~~~~f~~v~~~p~~~~v~~~~~~~~~~ 100 (407)
T 1vlj_A 28 RGTIPKIGEEIKNA--GIRKVLFLYGGGSIKKNGVYDQVVDSLKKHGIEWVEVSGVKPNPVLSKVHEAVEVAKKE 100 (407)
T ss_dssp TTCGGGHHHHHHHT--TCCEEEEEECSSHHHHSSHHHHHHHHHHHTTCEEEEECCCCSSCBHHHHHHHHHHHHHT
T ss_pred cCHHHHHHHHHHHc--CCCeEEEEECchHHhhccHHHHHHHHHHHcCCeEEEecCccCCCCHHHHHHHHHHHHhc
Confidence 34455555666543 1268888875 2 22 3678888898889998877763 3446666677777654
No 232
>2qzj_A Two-component response regulator; 11017X, PSI-II, structural genomics; 2.89A {Clostridium difficile}
Probab=48.23 E-value=39 Score=19.65 Aligned_cols=89 Identities=8% Similarity=-0.118 Sum_probs=44.1
Q ss_pred CCeEEEEeccHHHHHHHHHHHhhcCCeEEEEeCCCChHHHHHHHHHHhcCCCceEEEEecccc----ccccCcCccCEEE
Q psy2046 39 GHRVLIFSQFIFVLDILGHYMDIRGWRHLRLDGATQVSSRQELIDEYNRDQDLFAFLLSTKAG----GLGINLTAADTVI 114 (138)
Q Consensus 39 ~~k~iif~~~~~~~~~l~~~l~~~g~~~~~i~g~~~~~~R~~~~~~F~~~~~~~vll~~~~~~----~~Gl~l~~~~~vi 114 (138)
+..+..+.+..+.++ .+.......+.++-.++...-.+.++..+......+++++.... ...+.. ++..
T Consensus 28 g~~v~~~~~~~~al~----~~~~~~~dlvllD~~l~~~~g~~l~~~l~~~~~~~ii~ls~~~~~~~~~~~~~~-ga~~-- 100 (136)
T 2qzj_A 28 GISIDLAYNCEEAIG----KIFSNKYDLIFLEIILSDGDGWTLCKKIRNVTTCPIVYMTYINEDQSILNALNS-GGDD-- 100 (136)
T ss_dssp TCEEEEESSHHHHHH----HHHHCCCSEEEEESEETTEEHHHHHHHHHTTCCCCEEEEESCCCHHHHHHHHHT-TCCE--
T ss_pred CCEEEEECCHHHHHH----HHHhcCCCEEEEeCCCCCCCHHHHHHHHccCCCCCEEEEEcCCCHHHHHHHHHc-CCcE--
Confidence 445554444333333 23334456667666665444555666666433444555543321 122222 2222
Q ss_pred EeCCCCCccchhHHHHHHhh
Q psy2046 115 IHDVDFNPYNDKQAEDRCHR 134 (138)
Q Consensus 115 ~~~~~~~~~~~~Q~~gR~~R 134 (138)
++.-|+++....+++.++.+
T Consensus 101 ~l~KP~~~~~L~~~l~~~~~ 120 (136)
T 2qzj_A 101 YLIKPLNLEILYAKVKAILR 120 (136)
T ss_dssp EEESSCCHHHHHHHHHHHHH
T ss_pred EEECCCCHHHHHHHHHHHHH
Confidence 23447788878777766643
No 233
>1srr_A SPO0F, sporulation response regulatory protein; aspartate pocket, two component system; 1.90A {Bacillus subtilis} SCOP: c.23.1.1 PDB: 1pey_A 3q15_C 2ftk_E* 1fsp_A 1nat_A 1pux_A 2fsp_A 2jvj_A 2jvk_A 2jvi_A 1f51_E
Probab=48.10 E-value=34 Score=19.30 Aligned_cols=91 Identities=14% Similarity=0.094 Sum_probs=45.0
Q ss_pred CCCeEEEEeccHHHHHHHHHHHhhcCCeEEEEeCCCChHHHHHHHHHHhc-CCCceEEEEeccccc----cccCcCccCE
Q psy2046 38 NGHRVLIFSQFIFVLDILGHYMDIRGWRHLRLDGATQVSSRQELIDEYNR-DQDLFAFLLSTKAGG----LGINLTAADT 112 (138)
Q Consensus 38 ~~~k~iif~~~~~~~~~l~~~l~~~g~~~~~i~g~~~~~~R~~~~~~F~~-~~~~~vll~~~~~~~----~Gl~l~~~~~ 112 (138)
.+..+..+.+..+.+..+ .......+.++-.++...-.+.++..+. .+...+++++..... ..+.. ++..
T Consensus 26 ~~~~v~~~~~~~~a~~~~----~~~~~dlvl~D~~l~~~~g~~~~~~l~~~~~~~~ii~~s~~~~~~~~~~~~~~-g~~~ 100 (124)
T 1srr_A 26 EGYQTFQAANGLQALDIV----TKERPDLVLLDMKIPGMDGIEILKRMKVIDENIRVIIMTAYGELDMIQESKEL-GALT 100 (124)
T ss_dssp TTCEEEEESSHHHHHHHH----HHHCCSEEEEESCCTTCCHHHHHHHHHHHCTTCEEEEEESSCCHHHHHHHHHH-TCCC
T ss_pred CCcEEEEeCCHHHHHHHH----hccCCCEEEEecCCCCCCHHHHHHHHHHhCCCCCEEEEEccCchHHHHHHHhc-ChHh
Confidence 355555444433333333 3345567777766654344444555442 334455555533211 11111 1222
Q ss_pred EEEeCCCCCccchhHHHHHHhhc
Q psy2046 113 VIIHDVDFNPYNDKQAEDRCHRV 135 (138)
Q Consensus 113 vi~~~~~~~~~~~~Q~~gR~~R~ 135 (138)
++.-|+++....+++.++.+.
T Consensus 101 --~l~KP~~~~~l~~~i~~~~~~ 121 (124)
T 1srr_A 101 --HFAKPFDIDEIRDAVKKYLPL 121 (124)
T ss_dssp --EEESSCCHHHHHHHHHHHSCC
T ss_pred --hccCCCCHHHHHHHHHHHhcc
Confidence 234578888888888877653
No 234
>2kpo_A Rossmann 2X2 fold protein; de novo designed, rossmann fold, NESG, GFT structural G PSI-2, protein structure initiative; NMR {Artificial gene}
Probab=47.99 E-value=35 Score=19.05 Aligned_cols=61 Identities=18% Similarity=0.187 Sum_probs=43.0
Q ss_pred HHHHHHHHhhhC--CCeEEEEeccHHHHHHHHHHHhhcCCeEEEEeCCCChHHHHHHHHHHhcC
Q psy2046 27 KLDEILPDLKKN--GHRVLIFSQFIFVLDILGHYMDIRGWRHLRLDGATQVSSRQELIDEYNRD 88 (138)
Q Consensus 27 ~l~~ll~~~~~~--~~k~iif~~~~~~~~~l~~~l~~~g~~~~~i~g~~~~~~R~~~~~~F~~~ 88 (138)
.+.+.+.+..++ +-|++|.++..+.++.-.+.-.+..+.+.. ..-+++++..+.+..|...
T Consensus 37 elkkyleefrkesqnikvlilvsndeeldkakelaqkmeidvrt-rkvtspdeakrwikefsee 99 (110)
T 2kpo_A 37 ELKKYLEEFRKESQNIKVLILVSNDEELDKAKELAQKMEIDVRT-RKVTSPDEAKRWIKEFSEE 99 (110)
T ss_dssp HHHHHHHHHTSSTTSEEEEEEESSHHHHHHHHHHHHHTTCCEEE-EECSSHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhhccCeEEEEEEcChHHHHHHHHHHHhhceeeee-eecCChHHHHHHHHHHhhc
Confidence 455556555444 348999999999988877777766666433 3346788899999999754
No 235
>1qkk_A DCTD, C4-dicarboxylate transport transcriptional regulatory protein; receiver domain, 2-component signal transduction; 1.7A {Sinorhizobium meliloti} SCOP: c.23.1.1 PDB: 1l5z_A 1l5y_A
Probab=47.84 E-value=42 Score=19.92 Aligned_cols=75 Identities=15% Similarity=-0.015 Sum_probs=36.4
Q ss_pred HHHhhcCCeEEEEeCCCChHHHHHHHHHHhc-CCCceEEEEeccccc----cccCcCccCEEEEeCCCCCccchhHHHHH
Q psy2046 57 HYMDIRGWRHLRLDGATQVSSRQELIDEYNR-DQDLFAFLLSTKAGG----LGINLTAADTVIIHDVDFNPYNDKQAEDR 131 (138)
Q Consensus 57 ~~l~~~g~~~~~i~g~~~~~~R~~~~~~F~~-~~~~~vll~~~~~~~----~Gl~l~~~~~vi~~~~~~~~~~~~Q~~gR 131 (138)
..+.......+.++-.++...-.+.++..+. .+...+++++..... ..+. .++..+ +.-|.++....+++.+
T Consensus 41 ~~l~~~~~dliild~~l~~~~g~~~~~~l~~~~~~~pii~ls~~~~~~~~~~~~~-~g~~~~--l~kP~~~~~L~~~i~~ 117 (155)
T 1qkk_A 41 AGLSADFAGIVISDIRMPGMDGLALFRKILALDPDLPMILVTGHGDIPMAVQAIQ-DGAYDF--IAKPFAADRLVQSARR 117 (155)
T ss_dssp HTCCTTCCSEEEEESCCSSSCHHHHHHHHHHHCTTSCEEEEECGGGHHHHHHHHH-TTCCEE--EESSCCHHHHHHHHHH
T ss_pred HHHHhCCCCEEEEeCCCCCCCHHHHHHHHHhhCCCCCEEEEECCCChHHHHHHHh-cCCCeE--EeCCCCHHHHHHHHHH
Confidence 3344445667777765554334444444442 233445555433211 1111 123332 3447778877777776
Q ss_pred Hhh
Q psy2046 132 CHR 134 (138)
Q Consensus 132 ~~R 134 (138)
+.+
T Consensus 118 ~~~ 120 (155)
T 1qkk_A 118 AEE 120 (155)
T ss_dssp HHH
T ss_pred HHH
Confidence 643
No 236
>3pc3_A CG1753, isoform A; CBS, synthase, PLP, heme, aminoacrylate, lyase; HET: HEM P1T; 1.55A {Drosophila melanogaster} PDB: 3pc2_A* 3pc4_A*
Probab=47.75 E-value=84 Score=23.68 Aligned_cols=65 Identities=11% Similarity=0.013 Sum_probs=48.0
Q ss_pred cCchHHHHHHHHHHhhhCCC----eEEEEeccHHHHHHHHHHHhhcCCeEEEEeCCCChHHHHHHHHHH
Q psy2046 21 ESGKLKKLDEILPDLKKNGH----RVLIFSQFIFVLDILGHYMDIRGWRHLRLDGATQVSSRQELIDEY 85 (138)
Q Consensus 21 ~s~K~~~l~~ll~~~~~~~~----k~iif~~~~~~~~~l~~~l~~~g~~~~~i~g~~~~~~R~~~~~~F 85 (138)
-|-|...+..++.+..+.|. ..||=+..-+....++.+-...|+++..+-.......+...++.|
T Consensus 90 GS~K~R~a~~~i~~a~~~g~~~~g~~vv~~ssGN~g~a~A~~a~~~G~~~~iv~p~~~~~~k~~~~~~~ 158 (527)
T 3pc3_A 90 GSVKDRIGYRMVQDAEEQGLLKPGYTIIEPTSGNTGIGLAMACAVKGYKCIIVMPEKMSNEKVSALRTL 158 (527)
T ss_dssp SBTTHHHHHHHHHHHHHHTCCCTTCEEEEECSSHHHHHHHHHHHHHTCEEEEEEETTSCHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHHHcCCCCCCCEEEEeCCCHHHHHHHHHHHHhCCeEEEEEcCCCCHHHHHHHHHC
Confidence 46788888878776655553 455656666778888888888899987766665556777888887
No 237
>1dbw_A Transcriptional regulatory protein FIXJ; doubly wound five-stranded beta/alpha fold, nitrogen fixatio regulation; HET: 15P; 1.60A {Sinorhizobium meliloti} SCOP: c.23.1.1 PDB: 1dck_A* 1dcm_A 1d5w_A*
Probab=47.05 E-value=38 Score=19.21 Aligned_cols=76 Identities=12% Similarity=0.004 Sum_probs=40.7
Q ss_pred HHhhcCCeEEEEeCCCChHHHHHHHHHHhc-CCCceEEEEeccccc----cccCcCccCEEEEeCCCCCccchhHHHHHH
Q psy2046 58 YMDIRGWRHLRLDGATQVSSRQELIDEYNR-DQDLFAFLLSTKAGG----LGINLTAADTVIIHDVDFNPYNDKQAEDRC 132 (138)
Q Consensus 58 ~l~~~g~~~~~i~g~~~~~~R~~~~~~F~~-~~~~~vll~~~~~~~----~Gl~l~~~~~vi~~~~~~~~~~~~Q~~gR~ 132 (138)
.+.......+.++-.++...-.+.++..+. .+...+++++..... ..+.. ++.. ++.-|+++....+++.++
T Consensus 42 ~~~~~~~dlvi~D~~l~~~~g~~~~~~l~~~~~~~~ii~~s~~~~~~~~~~~~~~-ga~~--~l~Kp~~~~~l~~~i~~~ 118 (126)
T 1dbw_A 42 FAPDVRNGVLVTDLRMPDMSGVELLRNLGDLKINIPSIVITGHGDVPMAVEAMKA-GAVD--FIEKPFEDTVIIEAIERA 118 (126)
T ss_dssp HGGGCCSEEEEEECCSTTSCHHHHHHHHHHTTCCCCEEEEECTTCHHHHHHHHHT-TCSE--EEESSCCHHHHHHHHHHH
T ss_pred HHhcCCCCEEEEECCCCCCCHHHHHHHHHhcCCCCCEEEEECCCCHHHHHHHHHh-CHHH--heeCCCCHHHHHHHHHHH
Confidence 444555667777766654444555555553 234445555543211 11221 2322 334577888888888887
Q ss_pred hhcC
Q psy2046 133 HRVG 136 (138)
Q Consensus 133 ~R~G 136 (138)
.+..
T Consensus 119 ~~~~ 122 (126)
T 1dbw_A 119 SEHL 122 (126)
T ss_dssp HTTC
T ss_pred HHhh
Confidence 6543
No 238
>2eg4_A Probable thiosulfate sulfurtransferase; structural genomics, NPPSFA, national Pro protein structural and functional analyses; 1.70A {Thermus thermophilus} PDB: 2eg3_A
Probab=46.83 E-value=19 Score=23.74 Aligned_cols=38 Identities=13% Similarity=0.069 Sum_probs=30.1
Q ss_pred hCCCeEEEEeccHHHHHHHHHHHhhcCCeEEEEeCCCC
Q psy2046 37 KNGHRVLIFSQFIFVLDILGHYMDIRGWRHLRLDGATQ 74 (138)
Q Consensus 37 ~~~~k~iif~~~~~~~~~l~~~l~~~g~~~~~i~g~~~ 74 (138)
..++++|+||..-.........|...|.++..+.|+..
T Consensus 182 ~~~~~iv~~C~~G~rs~~a~~~L~~~G~~v~~~~Gg~~ 219 (230)
T 2eg4_A 182 QPGQEVGVYCHSGARSAVAFFVLRSLGVRARNYLGSMH 219 (230)
T ss_dssp CTTCEEEEECSSSHHHHHHHHHHHHTTCEEEECSSHHH
T ss_pred CCCCCEEEEcCChHHHHHHHHHHHHcCCCcEEecCcHH
Confidence 34678999999888888888889888966777788653
No 239
>1o2d_A Alcohol dehydrogenase, iron-containing; TM0920, structural genomics, JCSG, PSI, protein structure initiative; HET: MSE NAP TRS; 1.30A {Thermotoga maritima} SCOP: e.22.1.2 PDB: 1vhd_A*
Probab=46.64 E-value=78 Score=22.69 Aligned_cols=65 Identities=20% Similarity=0.208 Sum_probs=42.2
Q ss_pred CchHHHHHHHHHHhhhCCCeEEEEecc-H-H---HHHHHHHHHhhcCCeEEEEe---CCCChHHHHHHHHHHhcCC
Q psy2046 22 SGKLKKLDEILPDLKKNGHRVLIFSQF-I-F---VLDILGHYMDIRGWRHLRLD---GATQVSSRQELIDEYNRDQ 89 (138)
Q Consensus 22 s~K~~~l~~ll~~~~~~~~k~iif~~~-~-~---~~~~l~~~l~~~g~~~~~i~---g~~~~~~R~~~~~~F~~~~ 89 (138)
.+-+..+.+.++. .++|++|.+.. . . ..+.+.+.|+..|+.+..+. +..+.+.-.+..+.++..+
T Consensus 26 ~g~~~~l~~~l~~---~g~~~liVtd~~~~~~~g~~~~v~~~L~~~g~~~~~~~~~~~~p~~~~v~~~~~~~~~~~ 98 (371)
T 1o2d_A 26 EKILEKRGNIIDL---LGKRALVVTGKSSSKKNGSLDDLKKLLDETEISYEIFDEVEENPSFDNVMKAVERYRNDS 98 (371)
T ss_dssp TTHHHHHGGGGGG---TCSEEEEEEESSGGGTSSHHHHHHHHHHHTTCEEEEEEEECSSCBHHHHHHHHHHHTTSC
T ss_pred cCHHHHHHHHHHH---cCCEEEEEECchHHhhccHHHHHHHHHHHcCCeEEEeCCccCCCCHHHHHHHHHHHHhcC
Confidence 3445555555543 25688887764 2 2 46888888988888876665 3446667777888887543
No 240
>2yv2_A Succinyl-COA synthetase alpha chain; COA-binding domain, ligase, structural genomics, NPPSFA; 2.20A {Aeropyrum pernix}
Probab=46.64 E-value=71 Score=22.22 Aligned_cols=62 Identities=18% Similarity=0.119 Sum_probs=46.8
Q ss_pred eEEEEeccHHHHHHHHHHHhhcCCe--EEEEeCCCC--hHHHHHHHHHHhcCCCceEEEEeccccc
Q psy2046 41 RVLIFSQFIFVLDILGHYMDIRGWR--HLRLDGATQ--VSSRQELIDEYNRDQDLFAFLLSTKAGG 102 (138)
Q Consensus 41 k~iif~~~~~~~~~l~~~l~~~g~~--~~~i~g~~~--~~~R~~~~~~F~~~~~~~vll~~~~~~~ 102 (138)
++=+++++-.....+..++...|+. +..-.|+.. ...=.+.++.|.+++..+++++.....+
T Consensus 153 ~va~vSqSG~l~~~~~~~~~~~g~G~s~~vs~G~~~~~~~~~~d~l~~~~~D~~T~~I~l~~E~~~ 218 (297)
T 2yv2_A 153 GVAVVSRSGTLTYEISYMLTRQGIGQSTVIGIGGDPIVGLSFTEALKLFQEDPQTEALVLIGEIGG 218 (297)
T ss_dssp EEEEEESCHHHHHHHHHHHHHTTCCEEEEEECCSSSSCSSCHHHHHHHHHTCTTCSEEEEEECSSS
T ss_pred CEEEEECCHHHHHHHHHHHHHcCCCeeEEEeeCCCcCCCCCHHHHHHHHhcCCCCCEEEEEEeeCC
Confidence 5788888888888888888776554 455556555 3366789999999888888888877654
No 241
>1k66_A Phytochrome response regulator RCPB; CHEY homologue, homodimer, APO-protein, (beta/alpha)5, signaling protein; 1.75A {Tolypothrix SP} SCOP: c.23.1.1
Probab=46.46 E-value=42 Score=19.50 Aligned_cols=70 Identities=9% Similarity=0.060 Sum_probs=36.8
Q ss_pred cCCeEEEEeCCCChHHHHHHHHHHhcC---CCceEEEEeccccc----cccCcCccCEEEEeCCCCCccchhHHHHHHhh
Q psy2046 62 RGWRHLRLDGATQVSSRQELIDEYNRD---QDLFAFLLSTKAGG----LGINLTAADTVIIHDVDFNPYNDKQAEDRCHR 134 (138)
Q Consensus 62 ~g~~~~~i~g~~~~~~R~~~~~~F~~~---~~~~vll~~~~~~~----~Gl~l~~~~~vi~~~~~~~~~~~~Q~~gR~~R 134 (138)
.....+.++-.++...-.+.++..+.. +...+++++..... ..+.. ++..+ +.-|+++..+.+++.++.+
T Consensus 61 ~~~dlvi~D~~l~~~~g~~~~~~l~~~~~~~~~~ii~~t~~~~~~~~~~~~~~-g~~~~--l~kP~~~~~l~~~i~~~~~ 137 (149)
T 1k66_A 61 PRPAVILLDLNLPGTDGREVLQEIKQDEVLKKIPVVIMTTSSNPKDIEICYSY-SISSY--IVKPLEIDRLTETVQTFIK 137 (149)
T ss_dssp CCCSEEEECSCCSSSCHHHHHHHHTTSTTGGGSCEEEEESCCCHHHHHHHHHT-TCSEE--EECCSSHHHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCCHHHHHHHHHhCcccCCCeEEEEeCCCCHHHHHHHHHC-CCCEE--EeCCCCHHHHHHHHHHHHH
Confidence 345667777666655556667776643 23445555433211 11111 23332 3447778877777777643
No 242
>3czq_A Putative polyphosphate kinase 2; structural genomics, APC6299, PSI-2, structure initiative; HET: MSE GOL; 2.23A {Sinorhizobium meliloti}
Probab=46.27 E-value=15 Score=25.94 Aligned_cols=73 Identities=14% Similarity=0.115 Sum_probs=42.6
Q ss_pred CeEEEEeccH-----HHHHHHHHHHhhcCCeEEEEeCCCChHHHHHHHHHHhcCCCceEEEEeccccccccCcCccCEEE
Q psy2046 40 HRVLIFSQFI-----FVLDILGHYMDIRGWRHLRLDGATQVSSRQELIDEYNRDQDLFAFLLSTKAGGLGINLTAADTVI 114 (138)
Q Consensus 40 ~k~iif~~~~-----~~~~~l~~~l~~~g~~~~~i~g~~~~~~R~~~~~~F~~~~~~~vll~~~~~~~~Gl~l~~~~~vi 114 (138)
..+|||--.. ..+..|.+.|...|+.+..+.-.+..+.++..+..|.. .+|..-.++
T Consensus 86 ~vlIvfEG~DgAGKgt~Ik~L~e~Ldprg~~V~~~~~Pt~eE~~~~yl~R~~~------------------~LP~~G~Iv 147 (304)
T 3czq_A 86 RVMAVFEGRDAAGKGGAIHATTANMNPRSARVVALTKPTETERGQWYFQRYVA------------------TFPTAGEFV 147 (304)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTTSCTTTEEEEECCSCCHHHHTSCTTHHHHT------------------TCCCTTCEE
T ss_pred CeEEEEeCCCCCCHHHHHHHHHHHhcccCCeEEEeCCcChHHHhchHHHHHHH------------------hcccCCeEE
Confidence 3456665443 45778888888888876665544433333222232221 255667788
Q ss_pred EeCCCCCccchhHHHH
Q psy2046 115 IHDVDFNPYNDKQAED 130 (138)
Q Consensus 115 ~~~~~~~~~~~~Q~~g 130 (138)
++|-.|......|+.+
T Consensus 148 IfDRswYs~v~~~rv~ 163 (304)
T 3czq_A 148 LFDRSWYNRAGVEPVM 163 (304)
T ss_dssp EEEECGGGGTTHHHHH
T ss_pred EEECCcchHHHHHHHh
Confidence 8888886665556554
No 243
>1rzw_A Protein AF2095(GR4); beta-sheet of 4 parallel, anti-parallel beta-strands and 3 alpha-helices, structural genomics, PSI; NMR {Archaeoglobus fulgidus} SCOP: c.131.1.1 PDB: 3erj_A
Probab=46.21 E-value=47 Score=20.07 Aligned_cols=39 Identities=13% Similarity=0.037 Sum_probs=29.3
Q ss_pred HHHhhhCC-CeEEEEeccHHHHHHHHHHHhhcCCeEEEEe
Q psy2046 32 LPDLKKNG-HRVLIFSQFIFVLDILGHYMDIRGWRHLRLD 70 (138)
Q Consensus 32 l~~~~~~~-~k~iif~~~~~~~~~l~~~l~~~g~~~~~i~ 70 (138)
++.+...| .|+++-++..+.+..|.+..+..|+++..+.
T Consensus 40 l~~W~~~G~~Kvvlk~~~e~el~~L~~~a~~~gl~~~~I~ 79 (123)
T 1rzw_A 40 RRKWLDEGQKKVVLKVKSLEELLGIKHKAESLGLVTGLVQ 79 (123)
T ss_dssp HHHTGGGCSSEEEEECSCHHHHHHHHHHHHHTTCCEEEEC
T ss_pred HHHHHHCCCcEEEEecCCHHHHHHHHHHHHHCCCCEEEEE
Confidence 44444455 5788889888888999999888899876663
No 244
>1wn2_A Peptidyl-tRNA hydrolase; riken structural genomics/proteomics initiative, structural genomics; 1.20A {Pyrococcus horikoshii} PDB: 2d3k_A
Probab=45.90 E-value=47 Score=19.93 Aligned_cols=39 Identities=13% Similarity=0.044 Sum_probs=28.9
Q ss_pred HHHhhhCC-CeEEEEeccHHHHHHHHHHHhhcCCeEEEEe
Q psy2046 32 LPDLKKNG-HRVLIFSQFIFVLDILGHYMDIRGWRHLRLD 70 (138)
Q Consensus 32 l~~~~~~~-~k~iif~~~~~~~~~l~~~l~~~g~~~~~i~ 70 (138)
+..+...| .|+++-++..+.+..|.+.++..|+++..+.
T Consensus 47 ~~~W~~~g~~Kvvlk~~~e~el~~l~~~a~~~gl~~~~i~ 86 (121)
T 1wn2_A 47 FEAWFREGQKKVVVKVESEEELFKLKAEAEKLGLPNALIR 86 (121)
T ss_dssp HHHHHHTTCCEEEEEESSHHHHHHHHHHHHHTTCCEEEEE
T ss_pred HHHHHHCCCcEEEEecCCHHHHHHHHHHHHHCCCCEEEEE
Confidence 44444455 4777888888888899998888999876664
No 245
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=45.83 E-value=77 Score=22.41 Aligned_cols=91 Identities=13% Similarity=0.065 Sum_probs=54.2
Q ss_pred cCchHHHHHH-HHHHhh--hCCCeEEEEeccHHHHHHHHHHHhhc----CCeEEEEeCCCChHHHHHHHHHHhcCCCceE
Q psy2046 21 ESGKLKKLDE-ILPDLK--KNGHRVLIFSQFIFVLDILGHYMDIR----GWRHLRLDGATQVSSRQELIDEYNRDQDLFA 93 (138)
Q Consensus 21 ~s~K~~~l~~-ll~~~~--~~~~k~iif~~~~~~~~~l~~~l~~~----g~~~~~i~g~~~~~~R~~~~~~F~~~~~~~v 93 (138)
-++|.....- ++..+. ..+.+++|.++...-+..+.+.+... ++.+..++|+.+..+....+. .+. .+
T Consensus 84 GsGKT~~~~~~~~~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~---~~~--~i 158 (410)
T 2j0s_A 84 GTGKTATFSISVLQCLDIQVRETQALILAPTRELAVQIQKGLLALGDYMNVQCHACIGGTNVGEDIRKLD---YGQ--HV 158 (410)
T ss_dssp TSSHHHHHHHHHHHTCCTTSCSCCEEEECSSHHHHHHHHHHHHHHTTTTTCCEEEECTTSCHHHHHHHHH---HCC--SE
T ss_pred CCCchHHHHHHHHHHHhhccCCceEEEEcCcHHHHHHHHHHHHHHhccCCeEEEEEECCCCHHHHHHHhh---cCC--CE
Confidence 4678755443 333322 24578999999988777777766553 577888999888665544433 222 34
Q ss_pred EEEecccc----c-cccCcCccCEEEEe
Q psy2046 94 FLLSTKAG----G-LGINLTAADTVIIH 116 (138)
Q Consensus 94 ll~~~~~~----~-~Gl~l~~~~~vi~~ 116 (138)
++.++... . ..+.+.....+|+=
T Consensus 159 vv~Tp~~l~~~l~~~~~~~~~~~~vViD 186 (410)
T 2j0s_A 159 VAGTPGRVFDMIRRRSLRTRAIKMLVLD 186 (410)
T ss_dssp EEECHHHHHHHHHTTSSCCTTCCEEEEE
T ss_pred EEcCHHHHHHHHHhCCccHhheeEEEEc
Confidence 55554332 1 23445556666663
No 246
>2klx_A Glutaredoxin; thioredoxin type domain, ssgcid, electron TRAN structural genomics, seattle structural genomics center for infectious disease; NMR {Bartonella henselae}
Probab=45.49 E-value=35 Score=18.40 Aligned_cols=43 Identities=16% Similarity=0.305 Sum_probs=29.1
Q ss_pred eEEEEec-cHHHHHHHHHHHhhcCCeEEEEeCCCChHHHHHHHHHH
Q psy2046 41 RVLIFSQ-FIFVLDILGHYMDIRGWRHLRLDGATQVSSRQELIDEY 85 (138)
Q Consensus 41 k~iif~~-~~~~~~~l~~~l~~~g~~~~~i~g~~~~~~R~~~~~~F 85 (138)
++++|+. +......+...|.+.++++..++=. ...+....+.+
T Consensus 7 ~v~~y~~~~C~~C~~~~~~L~~~~i~~~~vdv~--~~~~~~l~~~~ 50 (89)
T 2klx_A 7 EIILYTRPNCPYCKRARDLLDKKGVKYTDIDAS--TSLRQEMVQRA 50 (89)
T ss_dssp CEEEESCSCCTTTHHHHHHHHHHTCCEEEECSC--HHHHHHHHHHH
T ss_pred eEEEEECCCChhHHHHHHHHHHcCCCcEEEECC--HHHHHHHHHHh
Confidence 5777763 3355677788888888888877665 44555666666
No 247
>4d9b_A D-cysteine desulfhydrase; fold type II PLP-dependent enzyme or tryptophan synthase BET like family, PLP dependent enzyme, lyase; HET: PMP; 1.67A {Salmonella typhimurium} PDB: 4d96_A* 4d9c_A* 4d9e_A* 4d9f_A* 4d97_A* 4d8w_A* 4d8u_A* 4d8t_A* 4d92_A* 4d99_A*
Probab=45.43 E-value=78 Score=22.35 Aligned_cols=66 Identities=18% Similarity=0.240 Sum_probs=45.8
Q ss_pred ccCchHHHHHHHHHHhhhCCCeEEEEec--cHHHHHHHHHHHhhcCCeEEEE-eCCCCh-------HHHHHHHHHH
Q psy2046 20 VESGKLKKLDEILPDLKKNGHRVLIFSQ--FIFVLDILGHYMDIRGWRHLRL-DGATQV-------SSRQELIDEY 85 (138)
Q Consensus 20 ~~s~K~~~l~~ll~~~~~~~~k~iif~~--~~~~~~~l~~~l~~~g~~~~~i-~g~~~~-------~~R~~~~~~F 85 (138)
.-|.|...+..++.+..+.+.+.||-+. +-+....++.+-...|+++..+ ...++. ..+...++.|
T Consensus 61 ~gs~K~R~~~~~l~~a~~~G~~~vv~~s~tsGN~g~alA~aa~~~G~~~~iv~p~~~~~~~~~~~~~~k~~~~~~~ 136 (342)
T 4d9b_A 61 MGGNKLRKLEFLVADALREGADTLITAGAIQSNHVRQTAAVAAKLGLHCVALLENPIGTTAENYLTNGNRLLLDLF 136 (342)
T ss_dssp TCCTHHHHHHHHHHHHHHTTCCEEEEEEETTCHHHHHHHHHHHHHTCEEEEEEECTTCCCCHHHHHSHHHHHHHHT
T ss_pred CcchHHHhHHHHHHHHHHcCCCEEEEcCCcccHHHHHHHHHHHHhCCcEEEEEeCCCCCccccccccchHHHHHHC
Confidence 4678999999888887777766555442 4566778888888889996554 444543 2466677777
No 248
>4f67_A UPF0176 protein LPG2838; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium; 1.79A {Legionella pneumophila subsp}
Probab=45.12 E-value=22 Score=24.54 Aligned_cols=38 Identities=16% Similarity=0.218 Sum_probs=31.4
Q ss_pred hCCCeEEEEeccHHHHHHHHHHHhhcCCe-EEEEeCCCC
Q psy2046 37 KNGHRVLIFSQFIFVLDILGHYMDIRGWR-HLRLDGATQ 74 (138)
Q Consensus 37 ~~~~k~iif~~~~~~~~~l~~~l~~~g~~-~~~i~g~~~ 74 (138)
..++++++||..-........+|...|+. +..+.|+..
T Consensus 179 ~kdk~IVvyC~~G~RS~~Aa~~L~~~Gf~nV~~L~GGi~ 217 (265)
T 4f67_A 179 KKDKKIAMFCTGGIRCEKTTAYMKELGFEHVYQLHDGIL 217 (265)
T ss_dssp GTTSCEEEECSSSHHHHHHHHHHHHHTCSSEEEETTHHH
T ss_pred CCCCeEEEEeCCChHHHHHHHHHHHcCCCCEEEecCHHH
Confidence 45678999999887788889999999994 777888764
No 249
>1e0c_A Rhodanese, sulfurtransferase; sulfur metabolism, thiosulfate:cyanide sulfurtransferase; 1.8A {Azotobacter vinelandii} SCOP: c.46.1.2 c.46.1.2 PDB: 1h4k_X 1h4m_X
Probab=44.99 E-value=22 Score=24.03 Aligned_cols=37 Identities=8% Similarity=-0.006 Sum_probs=29.6
Q ss_pred hCCCeEEEEeccHHHHHHHHHHHhhcCCe-EEEEeCCC
Q psy2046 37 KNGHRVLIFSQFIFVLDILGHYMDIRGWR-HLRLDGAT 73 (138)
Q Consensus 37 ~~~~k~iif~~~~~~~~~l~~~l~~~g~~-~~~i~g~~ 73 (138)
..++.+|+||..-.........|...|++ +..+.|+.
T Consensus 221 ~~~~~ivvyC~~G~rs~~a~~~L~~~G~~~v~~l~GG~ 258 (271)
T 1e0c_A 221 TPDKEIVTHCQTHHRSGLTYLIAKALGYPRVKGYAGSW 258 (271)
T ss_dssp CTTSEEEEECSSSSHHHHHHHHHHHTTCSCEEECSSHH
T ss_pred CCCCCEEEECCchHHHHHHHHHHHHcCCCCceeeCCcH
Confidence 45678999999877777888888889995 77788865
No 250
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A
Probab=44.90 E-value=96 Score=24.16 Aligned_cols=87 Identities=10% Similarity=0.038 Sum_probs=52.2
Q ss_pred cCchHHHHHHHHHHhhhCCCeEEEEeccHHHHHHHHHHHh---hcCCeEEEEeCCCChHHHHHHHHHHhcCCCceEEEEe
Q psy2046 21 ESGKLKKLDEILPDLKKNGHRVLIFSQFIFVLDILGHYMD---IRGWRHLRLDGATQVSSRQELIDEYNRDQDLFAFLLS 97 (138)
Q Consensus 21 ~s~K~~~l~~ll~~~~~~~~k~iif~~~~~~~~~l~~~l~---~~g~~~~~i~g~~~~~~R~~~~~~F~~~~~~~vll~~ 97 (138)
-++|.....-.+.+...++.++++.++.+.-+....+.++ ..|+.+..++|.....++ . . ....+++++
T Consensus 50 GsGKT~~~~l~il~~~~~~~~~l~i~P~r~La~q~~~~~~~~~~~g~~v~~~~G~~~~~~~-----~--~-~~~~Iiv~T 121 (702)
T 2p6r_A 50 AAGKTLLAEMAMVREAIKGGKSLYVVPLRALAGEKYESFKKWEKIGLRIGISTGDYESRDE-----H--L-GDCDIIVTT 121 (702)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCEEEEESSHHHHHHHHHHHTTTTTTTCCEEEECSSCBCCSS-----C--S-TTCSEEEEE
T ss_pred ccHHHHHHHHHHHHHHHhCCcEEEEeCcHHHHHHHHHHHHHHHhcCCEEEEEeCCCCcchh-----h--c-cCCCEEEEC
Confidence 3577766544333333457799999999977776666663 347889999998765432 1 1 134556666
Q ss_pred cccc----ccccC-cCccCEEEE
Q psy2046 98 TKAG----GLGIN-LTAADTVII 115 (138)
Q Consensus 98 ~~~~----~~Gl~-l~~~~~vi~ 115 (138)
+... ..+.. +...+.||+
T Consensus 122 pe~l~~~l~~~~~~l~~~~~vIi 144 (702)
T 2p6r_A 122 SEKADSLIRNRASWIKAVSCLVV 144 (702)
T ss_dssp HHHHHHHHHTTCSGGGGCCEEEE
T ss_pred HHHHHHHHHcChhHHhhcCEEEE
Confidence 5332 12222 556666666
No 251
>1ego_A Glutaredoxin; electron transport; NMR {Escherichia coli} SCOP: c.47.1.1 PDB: 1egr_A 1grx_A* 1qfn_A
Probab=44.66 E-value=20 Score=19.02 Aligned_cols=46 Identities=9% Similarity=0.030 Sum_probs=22.4
Q ss_pred eEEEEe-ccHHHHHHHHHHHhh-----cCCeEEEEeCCCChHHHHHHHHHHh
Q psy2046 41 RVLIFS-QFIFVLDILGHYMDI-----RGWRHLRLDGATQVSSRQELIDEYN 86 (138)
Q Consensus 41 k~iif~-~~~~~~~~l~~~l~~-----~g~~~~~i~g~~~~~~R~~~~~~F~ 86 (138)
++++|+ ++......+...|.+ .++.+..++-......+.+..+.+.
T Consensus 2 ~v~~f~~~~C~~C~~~~~~l~~l~~~~~~i~~~~vdi~~~~~~~~~l~~~~~ 53 (85)
T 1ego_A 2 QTVIFGRSGCPYCVRAKDLAEKLSNERDDFQYQYVDIRAEGITKEDLQQKAG 53 (85)
T ss_dssp EEEEECCTTSTHHHHHHHHHHHHHHHHSSCEEEEECHHHHTCCSHHHHHHTC
T ss_pred EEEEEeCCCCCCHHHHHHHHHHHHhcCCCceEEEEecccChHHHHHHHHHhC
Confidence 455665 233444555555554 5677766653222222334555554
No 252
>2lsn_A Reverse transcriptase; RNAse H, viral protein; NMR {Simian foamy virus}
Probab=44.24 E-value=54 Score=20.73 Aligned_cols=36 Identities=11% Similarity=0.122 Sum_probs=25.3
Q ss_pred HHHHHHHHHHhhhCCCeEEEEeccHHHHHHHHHHHh
Q psy2046 25 LKKLDEILPDLKKNGHRVLIFSQFIFVLDILGHYMD 60 (138)
Q Consensus 25 ~~~l~~ll~~~~~~~~k~iif~~~~~~~~~l~~~l~ 60 (138)
+..|...+....+.+.++.||+++.-.++.+..++.
T Consensus 61 i~Al~~al~~al~~~~~v~I~TDS~Yvi~~it~w~~ 96 (165)
T 2lsn_A 61 IAAVEFACKKALKIPGPVLVITDSFYVAESANKELP 96 (165)
T ss_dssp HHHHHHHHHHHHHSSSCEEEEESCHHHHHHHHTHHH
T ss_pred HHHHHHHHHHHhcCCCeEEEEeChHHHHhhhhhhhh
Confidence 444444444445566789999999988888877664
No 253
>1wkv_A Cysteine synthase; homodimer, open alpha/beta folding, transferase; HET: PLP; 2.00A {Aeropyrum pernix} SCOP: c.79.1.1
Probab=44.01 E-value=90 Score=22.68 Aligned_cols=64 Identities=14% Similarity=-0.041 Sum_probs=47.0
Q ss_pred cCchHHHHHHHHHH---hhhCCCeEEEEeccHHHHHHHHHHHhhcCCeEEEEeCCCChHHHHHHHHHH
Q psy2046 21 ESGKLKKLDEILPD---LKKNGHRVLIFSQFIFVLDILGHYMDIRGWRHLRLDGATQVSSRQELIDEY 85 (138)
Q Consensus 21 ~s~K~~~l~~ll~~---~~~~~~k~iif~~~~~~~~~l~~~l~~~g~~~~~i~g~~~~~~R~~~~~~F 85 (138)
-|-|...+..++.. ..+.+ +.||=+..-+....++.+....|+++..+.+.....++...++.+
T Consensus 124 GS~K~R~a~~~i~~l~~a~~~g-~~Iv~assGNhG~AlA~aaa~~Gl~~~ivmp~~~~~~k~~~~~~~ 190 (389)
T 1wkv_A 124 LSVKDRPAVEIISRLSRRVEKG-SLVADATSSNFGVALSAVARLYGYRARVYLPGAAEEFGKLLPRLL 190 (389)
T ss_dssp SBTTHHHHHHHHHHHTTTSCTT-CEEEEECCHHHHHHHHHHHHHTTCEEEEEEETTSCHHHHHHHHHT
T ss_pred CChHHHHHHHHHHHHHHHHhcC-CEEEEECCcHHHHHHHHHHHHcCCeEEEEECCCCCHHHHHHHHHc
Confidence 45798888877766 33445 677777777888889998889999988777655445666677776
No 254
>1xty_A PTH, peptidyl-tRNA hydrolase; mixed beta sheet; 1.80A {Pyrococcus abyssi}
Probab=43.66 E-value=51 Score=19.70 Aligned_cols=41 Identities=7% Similarity=0.057 Sum_probs=29.5
Q ss_pred HHHHHhhhCC-CeEEEEeccHHHHHHHHHHHhhcCCeEEEEe
Q psy2046 30 EILPDLKKNG-HRVLIFSQFIFVLDILGHYMDIRGWRHLRLD 70 (138)
Q Consensus 30 ~ll~~~~~~~-~k~iif~~~~~~~~~l~~~l~~~g~~~~~i~ 70 (138)
+.+..+...| .|+++-++..+.+..|.+.++..|+++..+.
T Consensus 44 ~~~~~W~~~g~~KiVlk~~~e~el~~l~~~a~~~gl~~~~i~ 85 (120)
T 1xty_A 44 EWLNEWLHQGQPKIIVKVNSLDEIISRAKKAETMNLPFSIIE 85 (120)
T ss_dssp HHHHHHHHTTCCEEEEEESSHHHHHHHHHHHHHTTCCEEEEE
T ss_pred HHHHHHHHCCCcEEEEecCCHHHHHHHHHHHHHCCCCEEEEE
Confidence 3444444455 4777778888888889888888898876553
No 255
>2yxb_A Coenzyme B12-dependent mutase; alpha/beta, structural genomics, NPPSFA, national project on structural and functional analyses; 1.80A {Aeropyrum pernix}
Probab=43.45 E-value=58 Score=20.34 Aligned_cols=46 Identities=7% Similarity=-0.050 Sum_probs=25.6
Q ss_pred CCeEEEEeccH----HHHHHHHHHHhhcCCeEEEEeCCCChHHHHHHHHH
Q psy2046 39 GHRVLIFSQFI----FVLDILGHYMDIRGWRHLRLDGATQVSSRQELIDE 84 (138)
Q Consensus 39 ~~k~iif~~~~----~~~~~l~~~l~~~g~~~~~i~g~~~~~~R~~~~~~ 84 (138)
..++++++.-. --...+...|+..|+.+..+-...+.++-.+.+.+
T Consensus 18 ~~~vlla~~~gd~HdiG~~~va~~l~~~G~eVi~lG~~~p~e~lv~aa~~ 67 (161)
T 2yxb_A 18 RYKVLVAKMGLDGHDRGAKVVARALRDAGFEVVYTGLRQTPEQVAMAAVQ 67 (161)
T ss_dssp SCEEEEEEESSSSCCHHHHHHHHHHHHTTCEEECCCSBCCHHHHHHHHHH
T ss_pred CCEEEEEeCCCCccHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHh
Confidence 34666665322 33566777777777776555445555544444433
No 256
>2l82_A Designed protein OR32; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, de novo protein; NMR {Artificial gene}
Probab=42.94 E-value=52 Score=19.59 Aligned_cols=37 Identities=16% Similarity=0.300 Sum_probs=28.6
Q ss_pred HHHHHHH---hhcCCeEEEEeCCCChHHHHHHHHHHhcCC
Q psy2046 53 DILGHYM---DIRGWRHLRLDGATQVSSRQELIDEYNRDQ 89 (138)
Q Consensus 53 ~~l~~~l---~~~g~~~~~i~g~~~~~~R~~~~~~F~~~~ 89 (138)
+++.+++ +..|..+..++.....+.|.+.-..|+.+.
T Consensus 90 ewikdfieeakergvevfvvynnkdddrrkeaqqefrsdg 129 (162)
T 2l82_A 90 EWIKDFIEEAKERGVEVFVVYNNKDDDRRKEAQQEFRSDG 129 (162)
T ss_dssp HHHHHHHHHHHHTTCEEEEEEECSCHHHHHHHHHHHCCSS
T ss_pred HHHHHHHHHHHhcCcEEEEEecCCCchhHHHHHHHhhhcC
Confidence 3444444 456999888888888899999999998664
No 257
>2fp3_A Caspase NC; apoptosis, initiator caspase activation, dimerization, active site conformation, hydrolysis/apoptosis complex; 2.50A {Drosophila melanogaster}
Probab=42.85 E-value=86 Score=22.12 Aligned_cols=45 Identities=11% Similarity=-0.028 Sum_probs=37.0
Q ss_pred eEEEEeccH------------HHHHHHHHHHhhcCCeEEEEeCCCChHHHHHHHHHHh
Q psy2046 41 RVLIFSQFI------------FVLDILGHYMDIRGWRHLRLDGATQVSSRQELIDEYN 86 (138)
Q Consensus 41 k~iif~~~~------------~~~~~l~~~l~~~g~~~~~i~g~~~~~~R~~~~~~F~ 86 (138)
-.|||.+.. .+.+.|.+.|+..|+.+ .++...+..+-.+.+++|.
T Consensus 63 ~aLIInN~~F~~~~~~R~Gt~~D~~~L~~~f~~LGF~V-~~~~dlt~~em~~~l~~f~ 119 (316)
T 2fp3_A 63 VLLMVNIMDYPDQNRRRIGAEKDSKSLIHLFQELNFTI-FPYGNVNQDQFFKLLTMVT 119 (316)
T ss_dssp EEEEEECCCCSSTTSCCTTHHHHHHHHHHHHHHTTEEE-EEECSCCHHHHHHHHHHHH
T ss_pred EEEEEeCcccCCCCCCCCCcHHHHHHHHHHHHHCCCEE-EEccCCCHHHHHHHHHHHH
Confidence 567877652 67889999999999985 5667788899999999996
No 258
>1rhs_A Sulfur-substituted rhodanese; transferase, sulfurtransferase; 1.36A {Bos taurus} SCOP: c.46.1.2 c.46.1.2 PDB: 1boh_A 1boi_A 1orb_A 2ora_A 1dp2_A* 1rhd_A
Probab=42.61 E-value=25 Score=24.19 Aligned_cols=48 Identities=8% Similarity=-0.074 Sum_probs=33.2
Q ss_pred HHHHHHHHh-hhCCCeEEEEeccHHHHHHHHHHHhhcCCe-EEEEeCCCC
Q psy2046 27 KLDEILPDL-KKNGHRVLIFSQFIFVLDILGHYMDIRGWR-HLRLDGATQ 74 (138)
Q Consensus 27 ~l~~ll~~~-~~~~~k~iif~~~~~~~~~l~~~l~~~g~~-~~~i~g~~~ 74 (138)
.+.+.+... ...++.+|+||..-.........|...|++ +..+.|+..
T Consensus 227 ~l~~~~~~~~~~~~~~ivv~C~sG~rs~~a~~~L~~~G~~~v~~~~GG~~ 276 (296)
T 1rhs_A 227 ELRAMFEAKKVDLTKPLIATCRKGVTACHIALAAYLCGKPDVAIYDGSWF 276 (296)
T ss_dssp HHHHHHHHTTCCTTSCEEEECSSSSTHHHHHHHHHHTTCCCCEEESSHHH
T ss_pred HHHHHHHHcCCCCCCCEEEECCcHHHHHHHHHHHHHcCCCCceeeCCcHH
Confidence 344444432 234678999999876667777788888986 778888654
No 259
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*
Probab=42.50 E-value=69 Score=20.91 Aligned_cols=91 Identities=11% Similarity=0.071 Sum_probs=46.4
Q ss_pred cCchHHH-HHHHHHHhhh--CCCeEEEEeccHHHHHHHHHHHhhc----CCeEEEEeCCCChHHHHHHHHHHhcCCCceE
Q psy2046 21 ESGKLKK-LDEILPDLKK--NGHRVLIFSQFIFVLDILGHYMDIR----GWRHLRLDGATQVSSRQELIDEYNRDQDLFA 93 (138)
Q Consensus 21 ~s~K~~~-l~~ll~~~~~--~~~k~iif~~~~~~~~~l~~~l~~~----g~~~~~i~g~~~~~~R~~~~~~F~~~~~~~v 93 (138)
-++|... +.-++..+.. .+.+++|.+++..-...+.+.++.. ++.+..++|+.+.... .+....+ ...+
T Consensus 77 GsGKT~~~~l~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~---~~~l~~~-~~~I 152 (237)
T 3bor_A 77 GTGKTATFAISILQQLEIEFKETQALVLAPTRELAQQIQKVILALGDYMGATCHACIGGTNVRNE---MQKLQAE-APHI 152 (237)
T ss_dssp SHHHHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHHHTTTTTCCEEEECC----------------C-CCSE
T ss_pred CCcHHHHHHHHHHHHHHhcCCCceEEEEECcHHHHHHHHHHHHHHhhhcCceEEEEECCCchHHH---HHHHhcC-CCCE
Confidence 3567654 3334443322 3568999999988877777766554 5677788887654332 2233333 2344
Q ss_pred EEEecccc----c-cccCcCccCEEEE
Q psy2046 94 FLLSTKAG----G-LGINLTAADTVII 115 (138)
Q Consensus 94 ll~~~~~~----~-~Gl~l~~~~~vi~ 115 (138)
++.++... . ..+++.....+|+
T Consensus 153 lv~Tp~~l~~~l~~~~~~~~~~~~lVi 179 (237)
T 3bor_A 153 VVGTPGRVFDMLNRRYLSPKWIKMFVL 179 (237)
T ss_dssp EEECHHHHHHHHHTTSSCSTTCCEEEE
T ss_pred EEECHHHHHHHHHhCCcCcccCcEEEE
Confidence 55554332 1 2345556666666
No 260
>2amj_A Modulator of drug activity B; oxidoreductase, menadione, DT-diaphorase, montreal-kingston structural genomics initiative, BSGI; 1.80A {Escherichia coli} PDB: 2b3d_A*
Probab=42.43 E-value=38 Score=21.99 Aligned_cols=30 Identities=27% Similarity=0.271 Sum_probs=19.8
Q ss_pred cCccCEEEEeCCCCC---ccchhHHHHHHhhcC
Q psy2046 107 LTAADTVIIHDVDFN---PYNDKQAEDRCHRVG 136 (138)
Q Consensus 107 l~~~~~vi~~~~~~~---~~~~~Q~~gR~~R~G 136 (138)
+..|+.+|+..|-|+ |..+..-++|+.+.|
T Consensus 68 l~~AD~iV~~~P~y~~s~pa~LK~~iDrv~~~g 100 (204)
T 2amj_A 68 FLWADVVIWQMPGWWMGAPWTVKKYIDDVFTEG 100 (204)
T ss_dssp HHHCSEEEEEEECBTTBCCHHHHHHHHHHHHHT
T ss_pred HHhCCEEEEECCccccCCCHHHHHHHHHHhhcC
Confidence 346677777777766 556667788876554
No 261
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=42.19 E-value=34 Score=22.12 Aligned_cols=31 Identities=23% Similarity=0.222 Sum_probs=25.2
Q ss_pred ccCchHHHHHHHHHHhhhCCCeEEEEeccHH
Q psy2046 20 VESGKLKKLDEILPDLKKNGHRVLIFSQFIF 50 (138)
Q Consensus 20 ~~s~K~~~l~~ll~~~~~~~~k~iif~~~~~ 50 (138)
+.++|-..++.++......+.++++|.....
T Consensus 17 mgsGKTT~ll~~a~r~~~~g~kV~v~k~~~d 47 (191)
T 1xx6_A 17 MYSGKSEELIRRIRRAKIAKQKIQVFKPEID 47 (191)
T ss_dssp TTSSHHHHHHHHHHHHHHTTCCEEEEEEC--
T ss_pred CCCcHHHHHHHHHHHHHHCCCEEEEEEeccC
Confidence 3589999999999988888999999976544
No 262
>1jq5_A Glycerol dehydrogenase; oxidoreductase, NAD, glycerol metabolism; HET: NAD; 1.70A {Geobacillus stearothermophilus} SCOP: e.22.1.2 PDB: 1jpu_A* 1jqa_A*
Probab=42.12 E-value=91 Score=22.21 Aligned_cols=60 Identities=8% Similarity=0.177 Sum_probs=33.8
Q ss_pred hHHHHHHHHHHhhhCCCeEEEEeccHH---HHHHHHHHHhhcCCeE--EEEeCCCChHHHHHHHHHHh
Q psy2046 24 KLKKLDEILPDLKKNGHRVLIFSQFIF---VLDILGHYMDIRGWRH--LRLDGATQVSSRQELIDEYN 86 (138)
Q Consensus 24 K~~~l~~ll~~~~~~~~k~iif~~~~~---~~~~l~~~l~~~g~~~--~~i~g~~~~~~R~~~~~~F~ 86 (138)
-+..+.+.++.+ ++|++|.++... ..+.+.+.|+..|+.+ ..+.|..+.+.-.+..+.++
T Consensus 19 ~~~~l~~~l~~~---g~~~livtd~~~~~~~~~~v~~~L~~~g~~~~~~~~~ge~~~~~v~~~~~~~~ 83 (370)
T 1jq5_A 19 VITKIANYLEGI---GNKTVVIADEIVWKIAGHTIVNELKKGNIAAEEVVFSGEASRNEVERIANIAR 83 (370)
T ss_dssp GGGGHHHHHTTT---CSEEEEEECHHHHHHTHHHHHHHHHTTTCEEEEEECCSSCBHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHc---CCeEEEEEChHHHHHHHHHHHHHHHHcCCeEEEEeeCCCCCHHHHHHHHHHHH
Confidence 344455555432 467777775432 2566777777777775 34555555545555555554
No 263
>2rjn_A Response regulator receiver:metal-dependent phosphohydrolase, HD subdomain; structural genomics, oceanospirillum SP. MED92; 2.10A {Neptuniibacter caesariensis}
Probab=41.90 E-value=53 Score=19.41 Aligned_cols=91 Identities=8% Similarity=0.010 Sum_probs=44.9
Q ss_pred CCCeEEEEeccHHHHHHHHHHHhhcCCeEEEEeCCCChHHHHHHHHHHhc-CCCceEEEEeccccc----cccCcCccCE
Q psy2046 38 NGHRVLIFSQFIFVLDILGHYMDIRGWRHLRLDGATQVSSRQELIDEYNR-DQDLFAFLLSTKAGG----LGINLTAADT 112 (138)
Q Consensus 38 ~~~k~iif~~~~~~~~~l~~~l~~~g~~~~~i~g~~~~~~R~~~~~~F~~-~~~~~vll~~~~~~~----~Gl~l~~~~~ 112 (138)
.+-.+..+.+..+. ...+.......+.++-.++...-...++..+. .+...+++++..... ..+....+..
T Consensus 30 ~g~~v~~~~~~~~a----~~~l~~~~~dlvi~d~~l~~~~g~~~~~~l~~~~~~~~ii~ls~~~~~~~~~~~~~~g~~~~ 105 (154)
T 2rjn_A 30 LGCNIITFTSPLDA----LEALKGTSVQLVISDMRMPEMGGEVFLEQVAKSYPDIERVVISGYADAQATIDAVNRGKISR 105 (154)
T ss_dssp TTCEEEEESCHHHH----HHHHTTSCCSEEEEESSCSSSCHHHHHHHHHHHCTTSEEEEEECGGGHHHHHHHHHTTCCSE
T ss_pred cCCeEEEeCCHHHH----HHHHhcCCCCEEEEecCCCCCCHHHHHHHHHHhCCCCcEEEEecCCCHHHHHHHHhccchhe
Confidence 45555544433222 23344445677777766654444455555542 234455555533221 1111112333
Q ss_pred EEEeCCCCCccchhHHHHHHhh
Q psy2046 113 VIIHDVDFNPYNDKQAEDRCHR 134 (138)
Q Consensus 113 vi~~~~~~~~~~~~Q~~gR~~R 134 (138)
+ +.-|+++....+++.++.+
T Consensus 106 ~--l~kP~~~~~L~~~i~~~~~ 125 (154)
T 2rjn_A 106 F--LLKPWEDEDVFKVVEKGLQ 125 (154)
T ss_dssp E--EESSCCHHHHHHHHHHHHH
T ss_pred e--eeCCCCHHHHHHHHHHHHH
Confidence 3 3446788888777776643
No 264
>1yya_A Triosephosphate isomerase; riken structural genomics/proteom initiative, RSGI, structural genomics; 1.60A {Thermus thermophilus}
Probab=41.59 E-value=28 Score=23.85 Aligned_cols=12 Identities=17% Similarity=0.116 Sum_probs=9.0
Q ss_pred cCEEEEeCCCCC
Q psy2046 110 ADTVIIHDVDFN 121 (138)
Q Consensus 110 ~~~vi~~~~~~~ 121 (138)
.+.||-|+|.|-
T Consensus 159 ~~vvIAYEPvWA 170 (250)
T 1yya_A 159 EALVIAYEPVWA 170 (250)
T ss_dssp GGCEEEECCGGG
T ss_pred CcEEEEECCHHH
Confidence 355788999984
No 265
>3kht_A Response regulator; PSI-II, 11023K, structural genomics, Pro structure initiative, NEW YORK SGX research center for STRU genomics, nysgxrc; 2.10A {Hahella chejuensis} SCOP: c.23.1.0
Probab=41.51 E-value=51 Score=19.15 Aligned_cols=74 Identities=11% Similarity=0.067 Sum_probs=41.4
Q ss_pred HHhhcCCeEEEEeCCCChHHHHHHHHHHhc---CCCceEEEEeccccc----cccCcCccCEEEEeCCCC-CccchhHHH
Q psy2046 58 YMDIRGWRHLRLDGATQVSSRQELIDEYNR---DQDLFAFLLSTKAGG----LGINLTAADTVIIHDVDF-NPYNDKQAE 129 (138)
Q Consensus 58 ~l~~~g~~~~~i~g~~~~~~R~~~~~~F~~---~~~~~vll~~~~~~~----~Gl~l~~~~~vi~~~~~~-~~~~~~Q~~ 129 (138)
.+.......+.++-.++...-.+.++..+. .+...+++++..... ..+.. +++. ++.-|+ ++..+.+++
T Consensus 46 ~l~~~~~dlii~D~~l~~~~g~~~~~~lr~~~~~~~~pii~~s~~~~~~~~~~~~~~-ga~~--~l~Kp~~~~~~l~~~i 122 (144)
T 3kht_A 46 QVQQAKYDLIILDIGLPIANGFEVMSAVRKPGANQHTPIVILTDNVSDDRAKQCMAA-GASS--VVDKSSNNVTDFYGRI 122 (144)
T ss_dssp HHTTCCCSEEEECTTCGGGCHHHHHHHHHSSSTTTTCCEEEEETTCCHHHHHHHHHT-TCSE--EEECCTTSHHHHHHHH
T ss_pred HhhcCCCCEEEEeCCCCCCCHHHHHHHHHhcccccCCCEEEEeCCCCHHHHHHHHHc-CCCE--EEECCCCcHHHHHHHH
Confidence 344455667777777776666777777765 234455665543211 11221 2332 334567 788787777
Q ss_pred HHHhh
Q psy2046 130 DRCHR 134 (138)
Q Consensus 130 gR~~R 134 (138)
.++.+
T Consensus 123 ~~~l~ 127 (144)
T 3kht_A 123 YAIFS 127 (144)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 76643
No 266
>3bbn_B Ribosomal protein S2; small ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea} SCOP: i.1.1.1
Probab=41.50 E-value=51 Score=22.28 Aligned_cols=64 Identities=13% Similarity=0.096 Sum_probs=39.9
Q ss_pred chHHHHHHHHHHhhhCCCeEEEEeccHHHHHHHHHHHhhcCCeEEE--EeCCC--ChHHHHHHHHHHh
Q psy2046 23 GKLKKLDEILPDLKKNGHRVLIFSQFIFVLDILGHYMDIRGWRHLR--LDGAT--QVSSRQELIDEYN 86 (138)
Q Consensus 23 ~K~~~l~~ll~~~~~~~~k~iif~~~~~~~~~l~~~l~~~g~~~~~--i~g~~--~~~~R~~~~~~F~ 86 (138)
.++...++++.+...++.++++........+.+.+.-...|..++. ..|++ +...-...+.+|+
T Consensus 48 ~~L~~A~~~i~~~~~~~~~iLfVgTk~~~~~~V~~~A~~~g~~yv~~rWlgG~LTN~~ti~~~i~~~~ 115 (231)
T 3bbn_B 48 RFLSEACDLVFDASSRGKQFLIVGTKNKAADSVARAAIRARCHYVNKKWLGGMLTNWSTTETRLHKFR 115 (231)
T ss_dssp HHTHHHHHHSHHHHTTTCCEEEECCCTTTHHHHHHHHHHHTCEECCSSCCSCSSSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCCEEEEEeCcHHHHHHHHHHHHHhCCccccccccCCCCcCHHHHHHHHHHHH
Confidence 5666677777777777777766666666667777777777776652 34443 4444344445554
No 267
>2fsf_A Preprotein translocase SECA subunit; ATPase, DNA-RNA helicase, protein translocation, protein transport; 2.00A {Escherichia coli} PDB: 2fsg_A* 2fsh_A* 2fsi_A* 2vda_A 3bxz_A*
Probab=41.49 E-value=1.5e+02 Score=24.35 Aligned_cols=73 Identities=8% Similarity=-0.087 Sum_probs=44.5
Q ss_pred cCchHHH-HHHHHHHhhhCCCeEEEEeccHHHHHHHHHHH----hhcCCeEEEEeCCCChHHHHHHHHHHhcCCCceEEE
Q psy2046 21 ESGKLKK-LDEILPDLKKNGHRVLIFSQFIFVLDILGHYM----DIRGWRHLRLDGATQVSSRQELIDEYNRDQDLFAFL 95 (138)
Q Consensus 21 ~s~K~~~-l~~ll~~~~~~~~k~iif~~~~~~~~~l~~~l----~~~g~~~~~i~g~~~~~~R~~~~~~F~~~~~~~vll 95 (138)
-++|... ++-++... -.+.+++|.+++..-+....+.+ +..|+++..+.|+++...|...- + +.+++
T Consensus 97 GsGKTlaf~LP~l~~~-l~g~~vlVltPTreLA~Q~~e~~~~l~~~lgl~v~~i~GG~~~~~r~~~~-----~--~dIvv 168 (853)
T 2fsf_A 97 GEGKTLTATLPAYLNA-LTGKGVHVVTVNDYLAQRDAENNRPLFEFLGLTVGINLPGMPAPAKREAY-----A--ADITY 168 (853)
T ss_dssp TSCHHHHHHHHHHHHH-TTSSCCEEEESSHHHHHHHHHHHHHHHHHTTCCEEECCTTCCHHHHHHHH-----H--SSEEE
T ss_pred CchHHHHHHHHHHHHH-HcCCcEEEEcCCHHHHHHHHHHHHHHHHhcCCeEEEEeCCCCHHHHHHhc-----C--CCEEE
Confidence 3566443 33444322 34678999999987665544444 44589999999999876543321 1 23466
Q ss_pred Eecccc
Q psy2046 96 LSTKAG 101 (138)
Q Consensus 96 ~~~~~~ 101 (138)
+++.-.
T Consensus 169 gTpgrl 174 (853)
T 2fsf_A 169 GTNNEY 174 (853)
T ss_dssp EEHHHH
T ss_pred ECCchh
Confidence 665443
No 268
>1mb3_A Cell division response regulator DIVK; signal transduction protein, structural proteomics in europe, spine, structural genomics; 1.41A {Caulobacter vibrioides} SCOP: c.23.1.1 PDB: 1m5u_A 1mav_A 1mb0_A 1m5t_A
Probab=41.32 E-value=47 Score=18.60 Aligned_cols=93 Identities=10% Similarity=-0.075 Sum_probs=42.9
Q ss_pred CCCeEEEEeccHHHHHHHHHHHhhcCCeEEEEeCCCChHHHHHHHHHHhcC---CCceEEEEecccccc-ccCcCccCEE
Q psy2046 38 NGHRVLIFSQFIFVLDILGHYMDIRGWRHLRLDGATQVSSRQELIDEYNRD---QDLFAFLLSTKAGGL-GINLTAADTV 113 (138)
Q Consensus 38 ~~~k~iif~~~~~~~~~l~~~l~~~g~~~~~i~g~~~~~~R~~~~~~F~~~---~~~~vll~~~~~~~~-Gl~l~~~~~v 113 (138)
.+-.+..+.+..+.+. .+.......+.++-.++...-.+.++..+.. +...+++++...... -.....+...
T Consensus 24 ~~~~v~~~~~~~~a~~----~~~~~~~dlvi~D~~l~~~~g~~~~~~l~~~~~~~~~~ii~~s~~~~~~~~~~~~~~g~~ 99 (124)
T 1mb3_A 24 QGYETLQTREGLSALS----IARENKPDLILMDIQLPEISGLEVTKWLKEDDDLAHIPVVAVTAFAMKGDEERIREGGCE 99 (124)
T ss_dssp TTCEEEEESCHHHHHH----HHHHHCCSEEEEESBCSSSBHHHHHHHHHHSTTTTTSCEEEEC------CHHHHHHHTCS
T ss_pred cCcEEEEeCCHHHHHH----HHhcCCCCEEEEeCCCCCCCHHHHHHHHHcCccccCCcEEEEECCCCHHHHHHHHhCCCC
Confidence 3555554443333222 3334456677777666544444555555532 233445554322110 0111111112
Q ss_pred EEeCCCCCccchhHHHHHHhh
Q psy2046 114 IIHDVDFNPYNDKQAEDRCHR 134 (138)
Q Consensus 114 i~~~~~~~~~~~~Q~~gR~~R 134 (138)
-++.-|+++....+++.++.+
T Consensus 100 ~~l~KP~~~~~l~~~i~~~~~ 120 (124)
T 1mb3_A 100 AYISKPISVVHFLETIKRLLE 120 (124)
T ss_dssp EEECSSCCHHHHHHHHHHHHS
T ss_pred EEEeCCCCHHHHHHHHHHHHh
Confidence 234567888888888877654
No 269
>3ovg_A Amidohydrolase; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics, NYSGXRC, HAD, PSI; HET: KCX; 2.06A {Mycoplasma synoviae} PDB: 3msr_A*
Probab=41.23 E-value=65 Score=23.22 Aligned_cols=73 Identities=19% Similarity=0.094 Sum_probs=37.8
Q ss_pred HHHHHHHHhhhCCCeEEE-EeccHHHHHHHHHHHhhcCCeEEEEeCCC-----ChHHHHHHHHHHh-cCCCceEEEEecc
Q psy2046 27 KLDEILPDLKKNGHRVLI-FSQFIFVLDILGHYMDIRGWRHLRLDGAT-----QVSSRQELIDEYN-RDQDLFAFLLSTK 99 (138)
Q Consensus 27 ~l~~ll~~~~~~~~k~ii-f~~~~~~~~~l~~~l~~~g~~~~~i~g~~-----~~~~R~~~~~~F~-~~~~~~vll~~~~ 99 (138)
.+.++|++..-...++++ ++......+...+++.+.| -+..++|.. +..+|.+.+.+.- .++. .-+|++|+
T Consensus 197 d~l~iL~e~g~~~~~vvi~H~~~~~~~~~a~~~l~~~G-~yI~f~g~~~~~~~~~~~ra~~l~~lv~~~p~-drILleTD 274 (363)
T 3ovg_A 197 EVAKHLIGFGANPDKIQISHLNKNPDKYYYEKVIKETG-VTLCFDGPDRVKYYPDSLLAENIKYLVDKGLQ-KHITLSLD 274 (363)
T ss_dssp HHHHHHHHHTCCGGGEEEECGGGSCCHHHHHHHHHHHC-CEEEECCTTCTTTCCHHHHHHHHHHHHHTTCG-GGEEECCC
T ss_pred HHHHHHHhcCCCCCcEEEEcCCCCCCHHHHHHHHHHCC-cEEEECCeeccccCChhHHHHHHHHHHHhcCC-CeEEEeCC
Confidence 444666553222245555 5553344555566663556 456777753 2334555555544 3433 33777877
Q ss_pred cc
Q psy2046 100 AG 101 (138)
Q Consensus 100 ~~ 101 (138)
+-
T Consensus 275 ap 276 (363)
T 3ovg_A 275 AG 276 (363)
T ss_dssp CC
T ss_pred CC
Confidence 64
No 270
>2j6p_A SB(V)-AS(V) reductase; arsenate reductase, antimonate reductase, CDC25 phosphatase, rhodanese, C-MYC epitope, oxidoreductase; HET: EPE; 2.15A {Leishmania major}
Probab=41.23 E-value=54 Score=20.03 Aligned_cols=21 Identities=14% Similarity=0.102 Sum_probs=15.0
Q ss_pred HHHHHHhhcCC---eEEEEeCCCC
Q psy2046 54 ILGHYMDIRGW---RHLRLDGATQ 74 (138)
Q Consensus 54 ~l~~~l~~~g~---~~~~i~g~~~ 74 (138)
.+...|...|+ .+..+.|+..
T Consensus 88 ~~~~~L~~~G~~~~~v~~L~GG~~ 111 (152)
T 2j6p_A 88 RFALAQKKLGYVLPAVYVLRGGWE 111 (152)
T ss_dssp HHHHHHHHHTCCCSEEEEETTHHH
T ss_pred HHHHHHHHcCCCCCCEEEEcCcHH
Confidence 45577888886 5777888764
No 271
>1ta9_A Glycerol dehydrogenase; oxidoredu; 1.90A {Schizosaccharomyces pombe}
Probab=41.08 E-value=1e+02 Score=22.90 Aligned_cols=62 Identities=6% Similarity=0.091 Sum_probs=37.8
Q ss_pred chHHHHHHHHHHhhhCCC-eEEEEeccHH---HHHHHHHHHhhcCCeE--EEEeCCCChHHHHHHHHHHhc
Q psy2046 23 GKLKKLDEILPDLKKNGH-RVLIFSQFIF---VLDILGHYMDIRGWRH--LRLDGATQVSSRQELIDEYNR 87 (138)
Q Consensus 23 ~K~~~l~~ll~~~~~~~~-k~iif~~~~~---~~~~l~~~l~~~g~~~--~~i~g~~~~~~R~~~~~~F~~ 87 (138)
+-+..+-+.++.+ +. |++|.++... ..+.+.+.|+..|+.+ ..+.|..+.+.-.+..+.+++
T Consensus 77 g~l~~l~~~l~~~---g~~rvlIVtd~~~~~~~~~~v~~~L~~~gi~~~~~~~~ge~~~~~v~~~~~~~~~ 144 (450)
T 1ta9_A 77 HAFTRSYMYVKKW---ATKSAVVLADQNVWNICANKIVDSLSQNGMTVTKLVFGGEASLVELDKLRKQCPD 144 (450)
T ss_dssp TGGGGHHHHHTTT---CSSEEEEEEEHHHHHHTHHHHHHHHHHTTCEEEEEEECSCCCHHHHHHHHTTSCT
T ss_pred CHHHHHHHHHHhc---CCCEEEEEECccHHHHHHHHHHHHHHHCCCeEEEEeeCCCCCHHHHHHHHHHHhh
Confidence 3344555555432 44 7888776432 3567778888888876 456666665555666665554
No 272
>1tf5_A Preprotein translocase SECA subunit; ATPase, helicase, translocation, secretion, protein transport; 2.18A {Bacillus subtilis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1tf2_A 3iqy_A 1m6n_A 1m74_A* 3iqm_A 3jv2_A* 2ibm_A* 3dl8_A 1sx0_A 1sx1_A 1tm6_A
Probab=40.93 E-value=1.5e+02 Score=24.27 Aligned_cols=72 Identities=11% Similarity=0.004 Sum_probs=44.9
Q ss_pred CchHH-HHHHHHHHhhhCCCeEEEEeccHHHHHHHHHHHh----hcCCeEEEEeCCCChHHHHHHHHHHhcCCCceEEEE
Q psy2046 22 SGKLK-KLDEILPDLKKNGHRVLIFSQFIFVLDILGHYMD----IRGWRHLRLDGATQVSSRQELIDEYNRDQDLFAFLL 96 (138)
Q Consensus 22 s~K~~-~l~~ll~~~~~~~~k~iif~~~~~~~~~l~~~l~----~~g~~~~~i~g~~~~~~R~~~~~~F~~~~~~~vll~ 96 (138)
++|.. .++-++... -.+..++|.+++..-+...++++. ..|+++..+.|+++..+|... + + +.|+++
T Consensus 107 eGKTlaf~LP~~l~a-L~g~~vlVltptreLA~qd~e~~~~l~~~lgl~v~~i~gg~~~~~r~~~---~--~--~dIv~g 178 (844)
T 1tf5_A 107 EGKTLTSTLPVYLNA-LTGKGVHVVTVNEYLASRDAEQMGKIFEFLGLTVGLNLNSMSKDEKREA---Y--A--ADITYS 178 (844)
T ss_dssp SCHHHHHHHHHHHHH-TTSSCEEEEESSHHHHHHHHHHHHHHHHHTTCCEEECCTTSCHHHHHHH---H--H--SSEEEE
T ss_pred cHHHHHHHHHHHHHH-HcCCCEEEEeCCHHHHHHHHHHHHHHHhhcCCeEEEEeCCCCHHHHHHh---c--C--CCEEEE
Confidence 45644 333444221 246789999999977665555544 458999999999987665432 2 1 234666
Q ss_pred ecccc
Q psy2046 97 STKAG 101 (138)
Q Consensus 97 ~~~~~ 101 (138)
++.-.
T Consensus 179 Tpgrl 183 (844)
T 1tf5_A 179 TNNEL 183 (844)
T ss_dssp EHHHH
T ss_pred Cchhh
Confidence 65444
No 273
>2zv3_A PTH, peptidyl-tRNA hydrolase; cytoplasm, structural genomics, NPPSFA; 2.10A {Methanocaldococcus jannaschii}
Probab=40.74 E-value=56 Score=19.35 Aligned_cols=38 Identities=11% Similarity=0.024 Sum_probs=27.9
Q ss_pred HHHhhhCC-CeEEEEeccHHHHHHHHHHHhhcCCeEEEE
Q psy2046 32 LPDLKKNG-HRVLIFSQFIFVLDILGHYMDIRGWRHLRL 69 (138)
Q Consensus 32 l~~~~~~~-~k~iif~~~~~~~~~l~~~l~~~g~~~~~i 69 (138)
+..+...| .|+++-++..+.+..|.+.++..|+++..+
T Consensus 41 ~~~W~~~g~~kivlk~~~e~~l~~l~~~a~~~gl~~~~i 79 (115)
T 2zv3_A 41 VDEWLREGQKKVVVKVNSEKELIDIYNKARSEGLPCSII 79 (115)
T ss_dssp HHHHHHTTCCEEEEEESSHHHHHHHHHHHHHHTCCEEEE
T ss_pred HHHHHHCCCeEEEEecCCHHHHHHHHHHHHHcCCCEEEE
Confidence 34444455 477777888888889998888889887555
No 274
>1xhf_A DYE resistance, aerobic respiration control protein ARCA; two-component system, gene regulation, transcription factor, anoxic redox control; 2.15A {Escherichia coli} SCOP: c.23.1.1 PDB: 1xhe_A
Probab=40.12 E-value=49 Score=18.51 Aligned_cols=72 Identities=15% Similarity=0.145 Sum_probs=36.8
Q ss_pred hhcCCeEEEEeCCCChHHHHHHHHHHhcCCCceEEEEeccccc----cccCcCccCEEEEeCCCCCccchhHHHHHHhh
Q psy2046 60 DIRGWRHLRLDGATQVSSRQELIDEYNRDQDLFAFLLSTKAGG----LGINLTAADTVIIHDVDFNPYNDKQAEDRCHR 134 (138)
Q Consensus 60 ~~~g~~~~~i~g~~~~~~R~~~~~~F~~~~~~~vll~~~~~~~----~Gl~l~~~~~vi~~~~~~~~~~~~Q~~gR~~R 134 (138)
.......+.++-.++...-.+.++..+..+...+++++..... ..+.. +++. ++.-|+++....+++.++.+
T Consensus 44 ~~~~~dlvi~D~~l~~~~g~~~~~~l~~~~~~~ii~~s~~~~~~~~~~~~~~-g~~~--~l~KP~~~~~l~~~i~~~~~ 119 (123)
T 1xhf_A 44 SEYDINLVIMDINLPGKNGLLLARELREQANVALMFLTGRDNEVDKILGLEI-GADD--YITKPFNPRELTIRARNLLS 119 (123)
T ss_dssp HHSCCSEEEECSSCSSSCHHHHHHHHHHHCCCEEEEEESCCSHHHHHHHHHH-TCSE--EEESSCCHHHHHHHHHHHHH
T ss_pred hcCCCCEEEEcCCCCCCCHHHHHHHHHhCCCCcEEEEECCCChHHHHHHHhc-Ccce--EEeCCCCHHHHHHHHHHHHH
Confidence 3445667777666654444455555553334445555433211 11221 2322 23457788877777776644
No 275
>3e05_A Precorrin-6Y C5,15-methyltransferase (decarboxyla; porphyrin metabolism, S-adenosyl-methionine; 1.80A {Geobacter metallireducens} SCOP: c.66.1.0
Probab=39.88 E-value=32 Score=21.82 Aligned_cols=41 Identities=10% Similarity=0.150 Sum_probs=27.9
Q ss_pred HHHHHHHHHHhhhCCCeEEEEeccHHHHHHHHHHHhhcCCe
Q psy2046 25 LKKLDEILPDLKKNGHRVLIFSQFIFVLDILGHYMDIRGWR 65 (138)
Q Consensus 25 ~~~l~~ll~~~~~~~~k~iif~~~~~~~~~l~~~l~~~g~~ 65 (138)
...+.+.+....+.+..+++..........+...+++.|+.
T Consensus 121 ~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~l~~~g~~ 161 (204)
T 3e05_A 121 LEEIIDAVDRRLKSEGVIVLNAVTLDTLTKAVEFLEDHGYM 161 (204)
T ss_dssp HHHHHHHHHHHCCTTCEEEEEECBHHHHHHHHHHHHHTTCE
T ss_pred HHHHHHHHHHhcCCCeEEEEEecccccHHHHHHHHHHCCCc
Confidence 44455555555566667777777777778888888888864
No 276
>3jte_A Response regulator receiver protein; structural genomics, nysgrc, response regulator receiver DOM target 11226E, PSI-2; 1.90A {Clostridium thermocellum atcc 27405}
Probab=39.87 E-value=54 Score=18.96 Aligned_cols=92 Identities=14% Similarity=0.084 Sum_probs=46.1
Q ss_pred CCCeEEEEeccHHHHHHHHHHHhhcCCeEEEEeCCCChHHHHHHHHHHhc-CCCceEEEEeccccc----cccCcCccCE
Q psy2046 38 NGHRVLIFSQFIFVLDILGHYMDIRGWRHLRLDGATQVSSRQELIDEYNR-DQDLFAFLLSTKAGG----LGINLTAADT 112 (138)
Q Consensus 38 ~~~k~iif~~~~~~~~~l~~~l~~~g~~~~~i~g~~~~~~R~~~~~~F~~-~~~~~vll~~~~~~~----~Gl~l~~~~~ 112 (138)
.+..+..+.+..+.+..+.. .......+.++-.++...-...++..+. .+...+++++..... ..+.. ++..
T Consensus 26 ~g~~v~~~~~~~~a~~~~~~--~~~~~dlvi~d~~l~~~~g~~~~~~l~~~~~~~~ii~ls~~~~~~~~~~~~~~-g~~~ 102 (143)
T 3jte_A 26 DGNEVLTASSSTEGLRIFTE--NCNSIDVVITDMKMPKLSGMDILREIKKITPHMAVIILTGHGDLDNAILAMKE-GAFE 102 (143)
T ss_dssp TTCEEEEESSHHHHHHHHHH--TTTTCCEEEEESCCSSSCHHHHHHHHHHHCTTCEEEEEECTTCHHHHHHHHHT-TCSE
T ss_pred CCceEEEeCCHHHHHHHHHh--CCCCCCEEEEeCCCCCCcHHHHHHHHHHhCCCCeEEEEECCCCHHHHHHHHHh-Ccce
Confidence 45566655554444433332 0235567777766655444555555542 234455555543211 11221 2332
Q ss_pred EEEeCCCCCccchhHHHHHHhh
Q psy2046 113 VIIHDVDFNPYNDKQAEDRCHR 134 (138)
Q Consensus 113 vi~~~~~~~~~~~~Q~~gR~~R 134 (138)
++.-|.++....+++.++.+
T Consensus 103 --~l~kp~~~~~l~~~l~~~~~ 122 (143)
T 3jte_A 103 --YLRKPVTAQDLSIAINNAIN 122 (143)
T ss_dssp --EEESSCCHHHHHHHHHHHHH
T ss_pred --eEeCCCCHHHHHHHHHHHHH
Confidence 23446788888777776643
No 277
>2qxy_A Response regulator; regulation of transcription, NYSGXRC, protein structure initiative II (PSI II), structural genomics; 1.95A {Thermotoga maritima}
Probab=39.86 E-value=54 Score=18.94 Aligned_cols=90 Identities=11% Similarity=-0.027 Sum_probs=45.7
Q ss_pred CCCeEEEEeccHHHHHHHHHHHhhcCCeEEEEeCCCChHHHHHHHHHHhc-CCCceEEEEeccccc----cccCcCccCE
Q psy2046 38 NGHRVLIFSQFIFVLDILGHYMDIRGWRHLRLDGATQVSSRQELIDEYNR-DQDLFAFLLSTKAGG----LGINLTAADT 112 (138)
Q Consensus 38 ~~~k~iif~~~~~~~~~l~~~l~~~g~~~~~i~g~~~~~~R~~~~~~F~~-~~~~~vll~~~~~~~----~Gl~l~~~~~ 112 (138)
.+-.+..+.+..+.+ ..+.......+.++- ++...-.+.++..+. .+...+++++..... ..+.. ++..
T Consensus 27 ~g~~v~~~~~~~~a~----~~l~~~~~dlvi~d~-~~~~~g~~~~~~l~~~~~~~pii~ls~~~~~~~~~~~~~~-g~~~ 100 (142)
T 2qxy_A 27 DGFNVIWAKNEQEAF----TFLRREKIDLVFVDV-FEGEESLNLIRRIREEFPDTKVAVLSAYVDKDLIINSVKA-GAVD 100 (142)
T ss_dssp GTCEEEEESSHHHHH----HHHTTSCCSEEEEEC-TTTHHHHHHHHHHHHHCTTCEEEEEESCCCHHHHHHHHHH-TCSC
T ss_pred CCCEEEEECCHHHHH----HHHhccCCCEEEEeC-CCCCcHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHC-Ccce
Confidence 355565444333322 334445567777777 665555556666553 233445555433211 11111 2222
Q ss_pred EEEeCCCCCccchhHHHHHHhhc
Q psy2046 113 VIIHDVDFNPYNDKQAEDRCHRV 135 (138)
Q Consensus 113 vi~~~~~~~~~~~~Q~~gR~~R~ 135 (138)
+ +.-|.++....+++.++.+.
T Consensus 101 ~--l~kP~~~~~l~~~i~~~~~~ 121 (142)
T 2qxy_A 101 Y--ILKPFRLDYLLERVKKIISS 121 (142)
T ss_dssp E--EESSCCHHHHHHHHHHHHHC
T ss_pred e--EeCCCCHHHHHHHHHHHHhh
Confidence 2 24477888888888777543
No 278
>1tmy_A CHEY protein, TMY; chemotaxis, phosphoryl transfer, signal transduction; 1.90A {Thermotoga maritima} SCOP: c.23.1.1 PDB: 2tmy_A 3tmy_A 4tmy_A 1u0s_Y
Probab=39.64 E-value=49 Score=18.40 Aligned_cols=71 Identities=14% Similarity=0.056 Sum_probs=37.0
Q ss_pred hhcCCeEEEEeCCCChHHHHHHHHHHhc-CCCceEEEEeccccc----cccCcCccCEEEEeCCCCCccchhHHHHHHh
Q psy2046 60 DIRGWRHLRLDGATQVSSRQELIDEYNR-DQDLFAFLLSTKAGG----LGINLTAADTVIIHDVDFNPYNDKQAEDRCH 133 (138)
Q Consensus 60 ~~~g~~~~~i~g~~~~~~R~~~~~~F~~-~~~~~vll~~~~~~~----~Gl~l~~~~~vi~~~~~~~~~~~~Q~~gR~~ 133 (138)
.......+.++-.++...-.+.++..+. .+...+++++..... ..+.. ++.. ++.-|+++....+++.++.
T Consensus 44 ~~~~~dlil~D~~l~~~~g~~~~~~l~~~~~~~~ii~~s~~~~~~~~~~~~~~-g~~~--~l~KP~~~~~l~~~i~~~~ 119 (120)
T 1tmy_A 44 KELKPDIVTMDITMPEMNGIDAIKEIMKIDPNAKIIVCSAMGQQAMVIEAIKA-GAKD--FIVKPFQPSRVVEALNKVS 119 (120)
T ss_dssp HHHCCSEEEEECSCGGGCHHHHHHHHHHHCTTCCEEEEECTTCHHHHHHHHHT-TCCE--EEESSCCHHHHHHHHHHHC
T ss_pred HhcCCCEEEEeCCCCCCcHHHHHHHHHhhCCCCeEEEEeCCCCHHHHHHHHHh-Ccce--eEeCCCCHHHHHHHHHHHh
Confidence 3345667777776665445555555542 234445555533211 11111 2222 3345778888877777654
No 279
>2qr3_A Two-component system response regulator; structural genomics, signal receiver, PSI-2, protein structu initiative; 1.80A {Bacteroides fragilis}
Probab=39.49 E-value=54 Score=18.81 Aligned_cols=91 Identities=14% Similarity=0.018 Sum_probs=45.1
Q ss_pred CCCeEEEEeccHHHHHHHHHHHhhcCCeEEEEeCCCC-----hHHHHHHHHHHhc-CCCceEEEEeccccc----cccCc
Q psy2046 38 NGHRVLIFSQFIFVLDILGHYMDIRGWRHLRLDGATQ-----VSSRQELIDEYNR-DQDLFAFLLSTKAGG----LGINL 107 (138)
Q Consensus 38 ~~~k~iif~~~~~~~~~l~~~l~~~g~~~~~i~g~~~-----~~~R~~~~~~F~~-~~~~~vll~~~~~~~----~Gl~l 107 (138)
.+-.+..+.+..+.++ .+.......+.++-.++ ...-.+.++..+. .+...+++++..... ..+..
T Consensus 26 ~g~~v~~~~~~~~a~~----~l~~~~~dlvi~d~~~~~~~~~~~~g~~~~~~l~~~~~~~~ii~ls~~~~~~~~~~~~~~ 101 (140)
T 2qr3_A 26 HFSKVITLSSPVSLST----VLREENPEVVLLDMNFTSGINNGNEGLFWLHEIKRQYRDLPVVLFTAYADIDLAVRGIKE 101 (140)
T ss_dssp TSSEEEEECCHHHHHH----HHHHSCEEEEEEETTTTC-----CCHHHHHHHHHHHCTTCCEEEEEEGGGHHHHHHHHHT
T ss_pred CCcEEEEeCCHHHHHH----HHHcCCCCEEEEeCCcCCCCCCCccHHHHHHHHHhhCcCCCEEEEECCCCHHHHHHHHHc
Confidence 3556665554333333 33344556777776655 3334444554442 233445555433211 11111
Q ss_pred CccCEEEEeCCCCCccchhHHHHHHhhc
Q psy2046 108 TAADTVIIHDVDFNPYNDKQAEDRCHRV 135 (138)
Q Consensus 108 ~~~~~vi~~~~~~~~~~~~Q~~gR~~R~ 135 (138)
++..+ +.-|+++....+++.++.+-
T Consensus 102 -g~~~~--l~kp~~~~~l~~~l~~~~~~ 126 (140)
T 2qr3_A 102 -GASDF--VVKPWDNQKLLETLLNAASQ 126 (140)
T ss_dssp -TCCEE--EEESCCHHHHHHHHHHHHTC
T ss_pred -Cchhe--eeCCCCHHHHHHHHHHHHHh
Confidence 23333 23477888888888877653
No 280
>1k68_A Phytochrome response regulator RCPA; phosphorylated aspartate, CHEY homologue, homodimer, (beta/alpha)5, signaling protein; HET: PHD; 1.90A {Tolypothrix SP} SCOP: c.23.1.1
Probab=39.21 E-value=54 Score=18.69 Aligned_cols=70 Identities=14% Similarity=0.034 Sum_probs=34.9
Q ss_pred cCCeEEEEeCCCChHHHHHHHHHHhcC---CCceEEEEeccccc----cccCcCccCEEEEeCCCCCccchhHHHHHHhh
Q psy2046 62 RGWRHLRLDGATQVSSRQELIDEYNRD---QDLFAFLLSTKAGG----LGINLTAADTVIIHDVDFNPYNDKQAEDRCHR 134 (138)
Q Consensus 62 ~g~~~~~i~g~~~~~~R~~~~~~F~~~---~~~~vll~~~~~~~----~Gl~l~~~~~vi~~~~~~~~~~~~Q~~gR~~R 134 (138)
.....+.++-.++...-.+.++..+.. +...+++++..... ..+.. ++.. ++.-|.++....+++.++.+
T Consensus 54 ~~~dlvi~d~~~~~~~g~~~~~~l~~~~~~~~~pii~ls~~~~~~~~~~~~~~-g~~~--~l~kP~~~~~l~~~i~~~~~ 130 (140)
T 1k68_A 54 SRPDLILLXLNLPKKDGREVLAEIKSDPTLKRIPVVVLSTSINEDDIFHSYDL-HVNC--YITKSANLSQLFQIVKGIEE 130 (140)
T ss_dssp CCCSEEEECSSCSSSCHHHHHHHHHHSTTGGGSCEEEEESCCCHHHHHHHHHT-TCSE--EEECCSSHHHHHHHHHHHHH
T ss_pred CCCcEEEEecCCCcccHHHHHHHHHcCcccccccEEEEecCCcHHHHHHHHHh-chhh--eecCCCCHHHHHHHHHHHHH
Confidence 345666776666544445555555532 23344555433211 11111 2332 23446777777777776643
No 281
>3dmq_A RNA polymerase-associated protein RAPA; SWF2/SNF2, transcription factor, RNA polymerase recycling, activator, ATP-binding, DNA-binding; 3.20A {Escherichia coli K12}
Probab=39.14 E-value=18 Score=29.76 Aligned_cols=81 Identities=17% Similarity=0.126 Sum_probs=48.1
Q ss_pred ccCchHHHHHHHHHHhhhCCC--eEEEEeccHHHHHHHHHHHhhcCCeEEEEeCCCChHHHHHHHHHHhcCCCceEEEEe
Q psy2046 20 VESGKLKKLDEILPDLKKNGH--RVLIFSQFIFVLDILGHYMDIRGWRHLRLDGATQVSSRQELIDEYNRDQDLFAFLLS 97 (138)
Q Consensus 20 ~~s~K~~~l~~ll~~~~~~~~--k~iif~~~~~~~~~l~~~l~~~g~~~~~i~g~~~~~~R~~~~~~F~~~~~~~vll~~ 97 (138)
.-++|.-....++..+...+. +++|.++..-...+..+..+..++++..++|+.....+......| ....+++++
T Consensus 179 tGlGKTi~Ai~~i~~l~~~g~~~rvLIVvP~sLl~Qw~~E~~~~f~l~v~v~~~~~~~~~~~~~~~~~---~~~dIvI~T 255 (968)
T 3dmq_A 179 VGLGKTIEAGMILHQQLLSGAAERVLIIVPETLQHQWLVEMLRRFNLRFALFDDERYAEAQHDAYNPF---DTEQLVICS 255 (968)
T ss_dssp TTSCHHHHHHHHHHHHHHTSSCCCEEEECCTTTHHHHHHHHHHHSCCCCEECCHHHHHHHHHTTCSSS---TTCSEEEEC
T ss_pred CCCcHHHHHHHHHHHHHHhCCCCeEEEEeCHHHHHHHHHHHHHHhCCCEEEEccchhhhhhhhccccc---ccCCEEEEc
Confidence 446888777777777665554 899999995444455555466688888777643222111111111 233567777
Q ss_pred cccccc
Q psy2046 98 TKAGGL 103 (138)
Q Consensus 98 ~~~~~~ 103 (138)
.+....
T Consensus 256 ~~~L~~ 261 (968)
T 3dmq_A 256 LDFARR 261 (968)
T ss_dssp HHHHHT
T ss_pred HHHHhh
Confidence 776643
No 282
>3jy6_A Transcriptional regulator, LACI family; NYSGXRC, PSI-II, protein S initiative, structural genomics; 1.97A {Lactobacillus brevis}
Probab=39.09 E-value=82 Score=20.79 Aligned_cols=68 Identities=16% Similarity=0.121 Sum_probs=32.2
Q ss_pred HHHHHHHHHH-hhhCCCeEEEEeccHH--HHHHHHHHHhhcCCeEEEEeCCCChHHHHHHHHHHhcCCCceEEEEe
Q psy2046 25 LKKLDEILPD-LKKNGHRVLIFSQFIF--VLDILGHYMDIRGWRHLRLDGATQVSSRQELIDEYNRDQDLFAFLLS 97 (138)
Q Consensus 25 ~~~l~~ll~~-~~~~~~k~iif~~~~~--~~~~l~~~l~~~g~~~~~i~g~~~~~~R~~~~~~F~~~~~~~vll~~ 97 (138)
...+.+-+.+ ..+.|-.++++..... ....+.+.+...++..+.+.+... ...++.+.....+ ++++.
T Consensus 22 ~~~~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~~----~~~~~~l~~~~iP-vV~i~ 92 (276)
T 3jy6_A 22 STELFKGISSILESRGYIGVLFDANADIEREKTLLRAIGSRGFDGLILQSFSN----PQTVQEILHQQMP-VVSVD 92 (276)
T ss_dssp HHHHHHHHHHHHHTTTCEEEEEECTTCHHHHHHHHHHHHTTTCSEEEEESSCC----HHHHHHHHTTSSC-EEEES
T ss_pred HHHHHHHHHHHHHHCCCEEEEEeCCCCHHHHHHHHHHHHhCCCCEEEEecCCc----HHHHHHHHHCCCC-EEEEe
Confidence 3344443433 2344666666654322 122233344455677666666554 3455555544333 34443
No 283
>2gn0_A Threonine dehydratase catabolic; TDCB, biodegradative threonine deaminase, PLP, threonine DEH L-threonine metabolism; HET: LLP; 1.70A {Salmonella typhimurium} PDB: 2gn1_A* 2gn2_A*
Probab=39.03 E-value=60 Score=22.94 Aligned_cols=65 Identities=14% Similarity=-0.024 Sum_probs=46.4
Q ss_pred ccCchHHHHHHHHHHhhh-C-CCeEEEEeccHHHHHHHHHHHhhcCCeEEEEeCCCChHHHHHHHHHH
Q psy2046 20 VESGKLKKLDEILPDLKK-N-GHRVLIFSQFIFVLDILGHYMDIRGWRHLRLDGATQVSSRQELIDEY 85 (138)
Q Consensus 20 ~~s~K~~~l~~ll~~~~~-~-~~k~iif~~~~~~~~~l~~~l~~~g~~~~~i~g~~~~~~R~~~~~~F 85 (138)
.-|-|...+..++....+ . ...++..+ +-+....++.+-...|+++..+........+.+.++.|
T Consensus 67 tGSfKdR~a~~~i~~a~~~~~~~~vv~~s-sGN~g~alA~aa~~~G~~~~iv~p~~~~~~k~~~~~~~ 133 (342)
T 2gn0_A 67 TGSFKIRGAFNKLSSLTEAEKRKGVVACS-AGNHAQGVSLSCAMLGIDGKVVMPKGAPKSKVAATCDY 133 (342)
T ss_dssp GGBTHHHHHHHHHHHSCHHHHHTCEEEEC-SSHHHHHHHHHHHHHTCCEEEEECTTSCHHHHHHHHHH
T ss_pred cCChHHHHHHHHHHHHHHhcCCCEEEEEC-CChHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHHc
Confidence 457799888888876532 2 33455554 55667888888888899987776655557788888888
No 284
>2ipc_A Preprotein translocase SECA subunit; nucleotide binding fold, ATPase, parallel dimer; 2.80A {Thermus thermophilus}
Probab=38.74 E-value=1.7e+02 Score=24.40 Aligned_cols=44 Identities=11% Similarity=0.031 Sum_probs=32.4
Q ss_pred CCCeEEEEeccHHHHHHHH----HHHhhcCCeEEEEeCCCChHHHHHH
Q psy2046 38 NGHRVLIFSQFIFVLDILG----HYMDIRGWRHLRLDGATQVSSRQEL 81 (138)
Q Consensus 38 ~~~k~iif~~~~~~~~~l~----~~l~~~g~~~~~i~g~~~~~~R~~~ 81 (138)
.|.+++|.+++..-+.... ...+..|+++..+.|+++..+|...
T Consensus 119 ~G~qv~VvTPTreLA~Qdae~m~~l~~~lGLsv~~i~Gg~~~~~r~~a 166 (997)
T 2ipc_A 119 TGKGVHVVTVNDYLARRDAEWMGPVYRGLGLSVGVIQHASTPAERRKA 166 (997)
T ss_dssp TCSCCEEEESSHHHHHHHHHHHHHHHHTTTCCEEECCTTCCHHHHHHH
T ss_pred hCCCEEEEeCCHHHHHHHHHHHHHHHHhcCCeEEEEeCCCCHHHHHHH
Confidence 4678999999987655444 4445569999999999987665543
No 285
>1rlk_A Hypothetical protein TA0108; structural genomics, conserved hypothetical protein, PSI, PR structure initiative; HET: SO4; 1.95A {Thermoplasma acidophilum} SCOP: c.131.1.1
Probab=38.63 E-value=62 Score=19.23 Aligned_cols=39 Identities=8% Similarity=0.086 Sum_probs=28.3
Q ss_pred HHHhhhCC-CeEEEEeccHHHHHHHHHHHhhcCCeEEEEe
Q psy2046 32 LPDLKKNG-HRVLIFSQFIFVLDILGHYMDIRGWRHLRLD 70 (138)
Q Consensus 32 l~~~~~~~-~k~iif~~~~~~~~~l~~~l~~~g~~~~~i~ 70 (138)
+..+...| .|+++-++..+.+..|.+.++..|+++..+.
T Consensus 43 ~~~W~~~g~~kiVlk~~~e~~l~~l~~~a~~~gl~~~~v~ 82 (117)
T 1rlk_A 43 FNEWYDEGQRKIVVKVNDLDEIMEIKRMADSMGIVNEIVQ 82 (117)
T ss_dssp HHHHHHTTCCEEEEEESSHHHHHHHHHHHHHHTCCEEEEE
T ss_pred HHHHHHCCCeEEEEecCCHHHHHHHHHHHHHCCCCEEEEE
Confidence 33344445 4777888888888888888888898876654
No 286
>4aec_A Cysteine synthase, mitochondrial; lyase, cysteine synthesis, assimilatory sulfate reduction, S plant inorganic sulfur uptake; HET: PLP; 2.40A {Arabidopsis thaliana}
Probab=38.58 E-value=1.2e+02 Score=22.49 Aligned_cols=73 Identities=19% Similarity=0.092 Sum_probs=51.1
Q ss_pred cCchHHHHHHHHHHhhhCCC-----eEEEEeccHHHHHHHHHHHhhcCCeEEEEeCCCChHHHHHHHHHHhcCCCceEEE
Q psy2046 21 ESGKLKKLDEILPDLKKNGH-----RVLIFSQFIFVLDILGHYMDIRGWRHLRLDGATQVSSRQELIDEYNRDQDLFAFL 95 (138)
Q Consensus 21 ~s~K~~~l~~ll~~~~~~~~-----k~iif~~~~~~~~~l~~~l~~~g~~~~~i~g~~~~~~R~~~~~~F~~~~~~~vll 95 (138)
-|-|...+..++.+..+.|. .+||-+..-+....++.+-...|+++..+-.......+...++.| |. .|++
T Consensus 151 GSfKdRgA~~~i~~A~~~G~l~~g~~~VV~aSsGNhG~AlA~aAa~~Gl~~~IvmP~~~s~~k~~~~r~~--GA--eVv~ 226 (430)
T 4aec_A 151 CSVKDRIGYSMVTDAEQKGFISPGKSVLVEPTSGNTGIGLAFIAASRGYRLILTMPASMSMERRVLLKAF--GA--ELVL 226 (430)
T ss_dssp SBTTHHHHHHHHHHHHHTTSCCTTTCEEEEECSSHHHHHHHHHHHHHTCEEEEEEETTSCHHHHHHHHHT--TC--EEEE
T ss_pred CCHHHHHHHHHHHHHHHcCCCCCCCcEEEEECCCHHHHHHHHHHHHhCCEEEEEEcCCCCHHHHHHHHHC--CC--EEEE
Confidence 36699988888887666553 455555556777888888888899987766655556777888887 32 3455
Q ss_pred Ee
Q psy2046 96 LS 97 (138)
Q Consensus 96 ~~ 97 (138)
+.
T Consensus 227 v~ 228 (430)
T 4aec_A 227 TD 228 (430)
T ss_dssp EC
T ss_pred EC
Confidence 53
No 287
>3ocu_A Lipoprotein E; hydrolase, outer membrane; HET: NMN; 1.35A {Haemophilus influenzae} PDB: 3ocv_A* 3ocw_A* 3ocx_A* 3ocz_A* 3ocy_A* 3sf0_A* 2hlk_A 2hll_A 3et4_A 3et5_A
Probab=38.32 E-value=69 Score=22.03 Aligned_cols=40 Identities=10% Similarity=-0.092 Sum_probs=30.4
Q ss_pred HHHHHHHHhhhCCCeEEEEeccHH--HHHHHHHHHhhcCCeE
Q psy2046 27 KLDEILPDLKKNGHRVLIFSQFIF--VLDILGHYMDIRGWRH 66 (138)
Q Consensus 27 ~l~~ll~~~~~~~~k~iif~~~~~--~~~~l~~~l~~~g~~~ 66 (138)
-+.+++..+.+.|-+++|.++... ..+.....|+..|++.
T Consensus 105 G~~ell~~L~~~G~ki~ivTgR~~~~~r~~T~~~L~~lGi~~ 146 (262)
T 3ocu_A 105 GAVEFNNYVNSHNGKVFYVTNRKDSTEKSGTIDDMKRLGFNG 146 (262)
T ss_dssp THHHHHHHHHHTTEEEEEEEEEETTTTHHHHHHHHHHHTCSC
T ss_pred cHHHHHHHHHHCCCeEEEEeCCCccchHHHHHHHHHHcCcCc
Confidence 455677777778888888887655 4677888888899884
No 288
>2gwr_A DNA-binding response regulator MTRA; two-component regulatory system, transcription regulation, phosphorylation, OMPR family; 2.10A {Mycobacterium tuberculosis} PDB: 3nhz_A
Probab=38.18 E-value=80 Score=20.42 Aligned_cols=91 Identities=15% Similarity=0.072 Sum_probs=46.8
Q ss_pred CCCeEEEEeccHHHHHHHHHHHhhcCCeEEEEeCCCChHHHHHHHHHHhcCCCceEEEEeccccc----cccCcCccCEE
Q psy2046 38 NGHRVLIFSQFIFVLDILGHYMDIRGWRHLRLDGATQVSSRQELIDEYNRDQDLFAFLLSTKAGG----LGINLTAADTV 113 (138)
Q Consensus 38 ~~~k~iif~~~~~~~~~l~~~l~~~g~~~~~i~g~~~~~~R~~~~~~F~~~~~~~vll~~~~~~~----~Gl~l~~~~~v 113 (138)
.+-.+..+.+..+.++.+ .......+.++-.++...-.+.++..+......+++++..... .++.. +++..
T Consensus 28 ~g~~v~~~~~~~~al~~l----~~~~~dlvilD~~l~~~~g~~~~~~lr~~~~~~ii~lt~~~~~~~~~~~~~~-Ga~~~ 102 (238)
T 2gwr_A 28 EGFDTAVIGDGTQALTAV----RELRPDLVLLDLMLPGMNGIDVCRVLRADSGVPIVMLTAKTDTVDVVLGLES-GADDY 102 (238)
T ss_dssp TTCEEEEECCGGGHHHHH----HHHCCSEEEEESSCSSSCHHHHHHHHHTTCCCCEEEEEETTCCSCHHHHHHT-TCCEE
T ss_pred CCCEEEEECCHHHHHHHH----HhCCCCEEEEeCCCCCCCHHHHHHHHHhCCCCcEEEEeCCCCHHHHHHHHHC-CCCEE
Confidence 355565555544444333 3334567777766655445556666654434445555433211 12221 23332
Q ss_pred EEeCCCCCccchhHHHHHHhhc
Q psy2046 114 IIHDVDFNPYNDKQAEDRCHRV 135 (138)
Q Consensus 114 i~~~~~~~~~~~~Q~~gR~~R~ 135 (138)
+.-|+++....+++.++.+-
T Consensus 103 --l~Kp~~~~~L~~~i~~~~~~ 122 (238)
T 2gwr_A 103 --IMKPFKPKELVARVRARLRR 122 (238)
T ss_dssp --EEESCCHHHHHHHHHHHCCC
T ss_pred --EeCCCCHHHHHHHHHHHHhh
Confidence 23467787777777776543
No 289
>3msz_A Glutaredoxin 1; alpha-beta sandwich, center for structural genomics of infec diseases, csgid, oxidoreductase; HET: GSH; 2.05A {Francisella tularensis subsp} PDB: 3lgc_A*
Probab=38.09 E-value=46 Score=17.62 Aligned_cols=34 Identities=6% Similarity=-0.135 Sum_probs=24.4
Q ss_pred CeEEEEe-ccHHHHHHHHHHHhhcCCeEEEEeCCC
Q psy2046 40 HRVLIFS-QFIFVLDILGHYMDIRGWRHLRLDGAT 73 (138)
Q Consensus 40 ~k~iif~-~~~~~~~~l~~~l~~~g~~~~~i~g~~ 73 (138)
-++++|+ ........+...|...|+++..+.=..
T Consensus 4 m~v~ly~~~~Cp~C~~~~~~L~~~~i~~~~~~vd~ 38 (89)
T 3msz_A 4 MKVKIYTRNGCPYCVWAKQWFEENNIAFDETIIDD 38 (89)
T ss_dssp CCEEEEECTTCHHHHHHHHHHHHTTCCCEEEECCS
T ss_pred eEEEEEEcCCChhHHHHHHHHHHcCCCceEEEeec
Confidence 3577886 455678888899999998876664433
No 290
>3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus}
Probab=37.89 E-value=1.3e+02 Score=22.75 Aligned_cols=51 Identities=18% Similarity=0.124 Sum_probs=25.3
Q ss_pred cCchHHHHHHHHHHhhh---------CCCeEEEEeccHHHHHHHH-HHHhhcCCeEEEEeC
Q psy2046 21 ESGKLKKLDEILPDLKK---------NGHRVLIFSQFIFVLDILG-HYMDIRGWRHLRLDG 71 (138)
Q Consensus 21 ~s~K~~~l~~ll~~~~~---------~~~k~iif~~~~~~~~~l~-~~l~~~g~~~~~i~g 71 (138)
-++|......++..+.. .+.+++|.++...-.+... +.++..+.....+.+
T Consensus 208 GsGKT~~~~~~~~~l~~~~~~~~~~~~~~~vlil~P~~~L~~Q~~~~~~~~~~~~~~~~~~ 268 (590)
T 3h1t_A 208 GTGKTVVAFQISWKLWSARWNRTGDYRKPRILFLADRNVLVDDPKDKTFTPFGDARHKIEG 268 (590)
T ss_dssp TSCHHHHHHHHHHHHHHTTCCSSCSSSCCCEEEEEC-----------CCTTTCSSEEECCC
T ss_pred CCChHHHHHHHHHHHHhcccccccccCCCeEEEEeCCHHHHHHHHHHHHHhcchhhhhhhc
Confidence 45777766666665544 3467888888777666666 666655555544443
No 291
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=37.59 E-value=1.3e+02 Score=22.49 Aligned_cols=78 Identities=14% Similarity=0.109 Sum_probs=46.2
Q ss_pred cCchHHHHHHHHHHhhhCCCeEEEEecc---HHHHHHHHHHHhhcCCeEEEEeCCCChH-HHHHHHHHHhcCCCceEEEE
Q psy2046 21 ESGKLKKLDEILPDLKKNGHRVLIFSQF---IFVLDILGHYMDIRGWRHLRLDGATQVS-SRQELIDEYNRDQDLFAFLL 96 (138)
Q Consensus 21 ~s~K~~~l~~ll~~~~~~~~k~iif~~~---~~~~~~l~~~l~~~g~~~~~i~g~~~~~-~R~~~~~~F~~~~~~~vll~ 96 (138)
-++|-..+..+...+.+.|.++++++.- ....+.|..+-...|+++........+. --...++.++... ..++|+
T Consensus 110 G~GKTTt~~kLA~~l~~~G~kVllv~~D~~R~aa~eqL~~~~~~~gvpv~~~~~~~dp~~i~~~al~~a~~~~-~DvVII 188 (443)
T 3dm5_A 110 GSGKTTTVAKLARYFQKRGYKVGVVCSDTWRPGAYHQLRQLLDRYHIEVFGNPQEKDAIKLAKEGVDYFKSKG-VDIIIV 188 (443)
T ss_dssp TSSHHHHHHHHHHHHHTTTCCEEEEECCCSSTHHHHHHHHHHGGGTCEEECCTTCCCHHHHHHHHHHHHHHTT-CSEEEE
T ss_pred CCCHHHHHHHHHHHHHHCCCeEEEEeCCCcchhHHHHHHHHHHhcCCcEEecCCCCCHHHHHHHHHHHHHhCC-CCEEEE
Confidence 4588888888888777788888877632 2345566666666677655443333332 2234566665432 234666
Q ss_pred ecc
Q psy2046 97 STK 99 (138)
Q Consensus 97 ~~~ 99 (138)
.|.
T Consensus 189 DTa 191 (443)
T 3dm5_A 189 DTA 191 (443)
T ss_dssp ECC
T ss_pred ECC
Confidence 543
No 292
>3vc3_A Beta-cyanoalnine synthase; beta-cyanoalanine synthase, transferase; HET: C6P; 1.77A {Glycine max} PDB: 3vbe_A*
Probab=37.54 E-value=1.1e+02 Score=21.71 Aligned_cols=65 Identities=9% Similarity=0.052 Sum_probs=49.1
Q ss_pred cCchHHHHHHHHHHhhhCC-----CeEEEEeccHHHHHHHHHHHhhcCCeEEEEeCCCChHHHHHHHHHH
Q psy2046 21 ESGKLKKLDEILPDLKKNG-----HRVLIFSQFIFVLDILGHYMDIRGWRHLRLDGATQVSSRQELIDEY 85 (138)
Q Consensus 21 ~s~K~~~l~~ll~~~~~~~-----~k~iif~~~~~~~~~l~~~l~~~g~~~~~i~g~~~~~~R~~~~~~F 85 (138)
-|-|.+-...++....+++ .+.||=+..-+..-.++-+-...|+++..+-....+..|...++.|
T Consensus 63 GSfK~RgA~~~i~~a~~~g~l~~g~~~Vv~aSsGN~g~alA~~aa~~G~~~~IvmP~~~~~~k~~~~~~~ 132 (344)
T 3vc3_A 63 ASIADRPAYAMITDAEEKNLITPGKTTLIEPTSGNMGISMAFMAAMKGYKMVLTMPSYTSLERRVTMRAF 132 (344)
T ss_dssp SBTTHHHHHHHHHHHHHTTCCCTTTCEEEEECSSHHHHHHHHHHHHHTCEEEEEEETTSCHHHHHHHHHT
T ss_pred CCcHHHHHHHHHHHHHHcCCCCCCCCEEEEeCCcHHHHHHHHHHHHcCCcEEEEECCCChHHHHHHHHHc
Confidence 3568887777777665544 4677777677778888888888899987777766667788888888
No 293
>2pl1_A Transcriptional regulatory protein PHOP; CHEY-like fold, response regulator, beryllium fluoride, transcription factor, activated, virulence; 1.90A {Escherichia coli} SCOP: c.23.1.1 PDB: 2pkx_A
Probab=37.23 E-value=54 Score=18.19 Aligned_cols=90 Identities=16% Similarity=0.031 Sum_probs=45.1
Q ss_pred CCCeEEEEeccHHHHHHHHHHHhhcCCeEEEEeCCCChHHHHHHHHHHhc-CCCceEEEEecccc----ccccCcCccCE
Q psy2046 38 NGHRVLIFSQFIFVLDILGHYMDIRGWRHLRLDGATQVSSRQELIDEYNR-DQDLFAFLLSTKAG----GLGINLTAADT 112 (138)
Q Consensus 38 ~~~k~iif~~~~~~~~~l~~~l~~~g~~~~~i~g~~~~~~R~~~~~~F~~-~~~~~vll~~~~~~----~~Gl~l~~~~~ 112 (138)
.+..+..+.+...... .+.......+.++-.++...-.+.++..+. .+...+++++.... ...+.. ++..
T Consensus 23 ~g~~v~~~~~~~~a~~----~~~~~~~dlil~D~~l~~~~g~~~~~~l~~~~~~~~ii~~s~~~~~~~~~~~~~~-g~~~ 97 (121)
T 2pl1_A 23 AGHQVDDAEDAKEADY----YLNEHIPDIAIVDLGLPDEDGLSLIRRWRSNDVSLPILVLTARESWQDKVEVLSA-GADD 97 (121)
T ss_dssp TTCEEEEESSHHHHHH----HHHHSCCSEEEECSCCSSSCHHHHHHHHHHTTCCSCEEEEESCCCHHHHHHHHHT-TCSE
T ss_pred cCCEEEEeCCHHHHHH----HHhccCCCEEEEecCCCCCCHHHHHHHHHhcCCCCCEEEEecCCCHHHHHHHHHc-Cccc
Confidence 4555554444333333 333445566777666654444555655553 23444555543321 112221 2222
Q ss_pred EEEeCCCCCccchhHHHHHHhh
Q psy2046 113 VIIHDVDFNPYNDKQAEDRCHR 134 (138)
Q Consensus 113 vi~~~~~~~~~~~~Q~~gR~~R 134 (138)
++.-|+++....+++.++.+
T Consensus 98 --~l~kp~~~~~l~~~i~~~~~ 117 (121)
T 2pl1_A 98 --YVTKPFHIEEVMARMQALMR 117 (121)
T ss_dssp --EEESSCCHHHHHHHHHHHHH
T ss_pred --eEECCCCHHHHHHHHHHHHH
Confidence 23457788888888877654
No 294
>2v5b_A Triosephosphate isomerase; TIM, unfolding, monotctim, glycosome, gluconeogenesis, lipid synthesis, monomeric mutant, glycolysis, pentose shunt; 2.00A {Trypanosoma cruzi}
Probab=37.00 E-value=49 Score=22.57 Aligned_cols=46 Identities=15% Similarity=-0.006 Sum_probs=24.7
Q ss_pred EEEEeccHHHHHHHHHHHhhcCCeEEEE--------eCCCChHHHHHHHHHHhcC
Q psy2046 42 VLIFSQFIFVLDILGHYMDIRGWRHLRL--------DGATQVSSRQELIDEYNRD 88 (138)
Q Consensus 42 ~iif~~~~~~~~~l~~~l~~~g~~~~~i--------~g~~~~~~R~~~~~~F~~~ 88 (138)
+-+..+.....+. ..+|+..|++++.+ +|.++..-..++....+.+
T Consensus 61 i~vgAQn~~~~~~-~~mL~d~G~~~ViiGHSERR~~f~Etd~~v~~Kv~~Al~~G 114 (244)
T 2v5b_A 61 FQIAAQNAGNADA-LASLKDYGISWVVLGHSERRLYYGETNEIVAEKVAQACAAG 114 (244)
T ss_dssp EEEEESCCCCHHH-HHHHHHTTCCEEEECCHHHHHHSCCCHHHHHHHHHHHHHTT
T ss_pred ceEEeccCCCCCC-HHHHHHcCCCEEEeCchhhhhccCCCHHHHHHHHHHHHHCC
Confidence 4444444333333 67777778887654 3444444444455555555
No 295
>3klo_A Transcriptional regulator VPST; REC domain, HTH domain, DNA-binding, transcription regulation; HET: C2E TAR; 2.80A {Vibrio cholerae} PDB: 3kln_A*
Probab=36.88 E-value=82 Score=20.16 Aligned_cols=80 Identities=8% Similarity=-0.105 Sum_probs=49.0
Q ss_pred HHHHHHHhhcCCeEEEEeCCCChHHHHHHHHHHhc--CCCceEEEEeccccc----cccCcCccCEEEEeCCCCCccchh
Q psy2046 53 DILGHYMDIRGWRHLRLDGATQVSSRQELIDEYNR--DQDLFAFLLSTKAGG----LGINLTAADTVIIHDVDFNPYNDK 126 (138)
Q Consensus 53 ~~l~~~l~~~g~~~~~i~g~~~~~~R~~~~~~F~~--~~~~~vll~~~~~~~----~Gl~l~~~~~vi~~~~~~~~~~~~ 126 (138)
+.+...+.......+.++-.++...-.+.++..+. .+...+++++..... .++.. ++ .-++.-|+++....
T Consensus 44 ~~~~~~~~~~~~dlvllD~~mp~~~G~~~~~~lr~~~~~~~~ii~lt~~~~~~~~~~~~~~-Ga--~~~l~Kp~~~~~L~ 120 (225)
T 3klo_A 44 WLEENKPESRSIQMLVIDYSRISDDVLTDYSSFKHISCPDAKEVIINCPQDIEHKLLFKWN-NL--AGVFYIDDDMDTLI 120 (225)
T ss_dssp HHHTTCSGGGGCCEEEEEGGGCCHHHHHHHHHHHHHHCTTCEEEEEEECTTCCHHHHTTST-TE--EEEEETTCCHHHHH
T ss_pred HHHHHHhhccCCCEEEEeCCCCCCCHHHHHHHHHHhhCCCCcEEEEECCcchhHHHHHHHh-CC--CEEEecCCCHHHHH
Confidence 44444455556778888888887777777777765 455566666543321 22222 22 22345678888888
Q ss_pred HHHHHHhhc
Q psy2046 127 QAEDRCHRV 135 (138)
Q Consensus 127 Q~~gR~~R~ 135 (138)
.++.++.+-
T Consensus 121 ~~i~~~~~~ 129 (225)
T 3klo_A 121 KGMSKILQD 129 (225)
T ss_dssp HHHHHHHTT
T ss_pred HHHHHHHCC
Confidence 888887653
No 296
>3hv2_A Response regulator/HD domain protein; PSI-2, NYSGXRC, structural genomics, protein structure initiative; 1.50A {Pseudomonas fluorescens pf-5}
Probab=36.57 E-value=66 Score=18.97 Aligned_cols=90 Identities=9% Similarity=-0.044 Sum_probs=44.5
Q ss_pred CCeEEEEeccHHHHHHHHHHHhhcCCeEEEEeCCCChHHHHHHHHHHhc-CCCceEEEEeccccc----cccCcCccCEE
Q psy2046 39 GHRVLIFSQFIFVLDILGHYMDIRGWRHLRLDGATQVSSRQELIDEYNR-DQDLFAFLLSTKAGG----LGINLTAADTV 113 (138)
Q Consensus 39 ~~k~iif~~~~~~~~~l~~~l~~~g~~~~~i~g~~~~~~R~~~~~~F~~-~~~~~vll~~~~~~~----~Gl~l~~~~~v 113 (138)
+-.+..+.+..+.+.. +.......+.++-.++...-.+.++..+. .+...+++++...-. ..+....+..
T Consensus 38 g~~v~~~~~~~~a~~~----l~~~~~dlvi~D~~l~~~~g~~~~~~l~~~~~~~~ii~~s~~~~~~~~~~~~~~g~~~~- 112 (153)
T 3hv2_A 38 PYTLHFARDATQALQL----LASREVDLVISAAHLPQMDGPTLLARIHQQYPSTTRILLTGDPDLKLIAKAINEGEIYR- 112 (153)
T ss_dssp SCEEEEESSHHHHHHH----HHHSCCSEEEEESCCSSSCHHHHHHHHHHHCTTSEEEEECCCCCHHHHHHHHHTTCCSE-
T ss_pred CcEEEEECCHHHHHHH----HHcCCCCEEEEeCCCCcCcHHHHHHHHHhHCCCCeEEEEECCCCHHHHHHHHhCCCcce-
Confidence 4455544443333333 33445667777766665555555555552 234445555432211 1112111332
Q ss_pred EEeCCCCCccchhHHHHHHhh
Q psy2046 114 IIHDVDFNPYNDKQAEDRCHR 134 (138)
Q Consensus 114 i~~~~~~~~~~~~Q~~gR~~R 134 (138)
++.-|+++..+.+++.++.+
T Consensus 113 -~l~KP~~~~~l~~~i~~~l~ 132 (153)
T 3hv2_A 113 -YLSKPWDDQELLLALRQALE 132 (153)
T ss_dssp -EECSSCCHHHHHHHHHHHHH
T ss_pred -EEeCCCCHHHHHHHHHHHHH
Confidence 33457788888777776643
No 297
>3tb6_A Arabinose metabolism transcriptional repressor; transcription regulation, arabinose binding, DNA binding Pro; HET: ARB; 2.21A {Bacillus subtilis}
Probab=36.46 E-value=92 Score=20.62 Aligned_cols=11 Identities=9% Similarity=-0.019 Sum_probs=4.9
Q ss_pred hcCCeEEEEeC
Q psy2046 61 IRGWRHLRLDG 71 (138)
Q Consensus 61 ~~g~~~~~i~g 71 (138)
..++..+.+.+
T Consensus 69 ~~~vdgiIi~~ 79 (298)
T 3tb6_A 69 SQHIDGLIVEP 79 (298)
T ss_dssp HTCCSEEEECC
T ss_pred HCCCCEEEEec
Confidence 34444444443
No 298
>2qv0_A Protein MRKE; structural genomics, transcription, PSI-2, protein structure initiative; 2.40A {Klebsiella pneumoniae}
Probab=36.40 E-value=63 Score=18.67 Aligned_cols=71 Identities=7% Similarity=-0.073 Sum_probs=34.9
Q ss_pred hhcCCeEEEEeCCCChHHHHHHHHHHhcC-CCceEEEEeccccccccCc--CccCEEEEeCCCCCccchhHHHHHHh
Q psy2046 60 DIRGWRHLRLDGATQVSSRQELIDEYNRD-QDLFAFLLSTKAGGLGINL--TAADTVIIHDVDFNPYNDKQAEDRCH 133 (138)
Q Consensus 60 ~~~g~~~~~i~g~~~~~~R~~~~~~F~~~-~~~~vll~~~~~~~~Gl~l--~~~~~vi~~~~~~~~~~~~Q~~gR~~ 133 (138)
.......+.++-.++...-.+.++..+.. +...+++++.. ...-... .++.. ++.-|+++....+++.++.
T Consensus 52 ~~~~~dlvi~d~~l~~~~g~~~~~~l~~~~~~~~ii~~s~~-~~~~~~~~~~g~~~--~l~KP~~~~~l~~~i~~~~ 125 (143)
T 2qv0_A 52 QHNKVDAIFLDINIPSLDGVLLAQNISQFAHKPFIVFITAW-KEHAVEAFELEAFD--YILKPYQESRIINMLQKLT 125 (143)
T ss_dssp HHCCCSEEEECSSCSSSCHHHHHHHHTTSTTCCEEEEEESC-CTTHHHHHHTTCSE--EEESSCCHHHHHHHHHHHH
T ss_pred HhCCCCEEEEecCCCCCCHHHHHHHHHccCCCceEEEEeCC-HHHHHHHHhCCcce--EEeCCCCHHHHHHHHHHHH
Confidence 33445666666665544445566666543 23334554432 1111111 12222 2344777777777777653
No 299
>1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A*
Probab=36.27 E-value=48 Score=21.76 Aligned_cols=29 Identities=17% Similarity=0.155 Sum_probs=24.9
Q ss_pred ccCchHHHHHHHHHHhhhCCCeEEEEecc
Q psy2046 20 VESGKLKKLDEILPDLKKNGHRVLIFSQF 48 (138)
Q Consensus 20 ~~s~K~~~l~~ll~~~~~~~~k~iif~~~ 48 (138)
+.++|-..|++.+......+.++++|.+.
T Consensus 29 MgsGKTt~Ll~~i~n~~~~~~kvl~~kp~ 57 (195)
T 1w4r_A 29 MFSGKSTELMRRVRRFQIAQYKCLVIKYA 57 (195)
T ss_dssp TTSCHHHHHHHHHHHHHHTTCCEEEEEET
T ss_pred CCCcHHHHHHHHHHHHHHcCCeEEEEccc
Confidence 46899999999998888888999999755
No 300
>2gmw_A D,D-heptose 1,7-bisphosphate phosphatase; Zn-binding protein, hydrolase; 1.50A {Escherichia coli} SCOP: c.108.1.19 PDB: 3esq_A 3esr_A 3l1u_A 3l1v_A 3l8e_A 3l8f_A 3l8g_A*
Probab=36.23 E-value=84 Score=20.07 Aligned_cols=40 Identities=13% Similarity=0.176 Sum_probs=27.9
Q ss_pred HHHHHHHHHhhhCCCeEEEEeccHHH-------------HHHHHHHHhhcCCe
Q psy2046 26 KKLDEILPDLKKNGHRVLIFSQFIFV-------------LDILGHYMDIRGWR 65 (138)
Q Consensus 26 ~~l~~ll~~~~~~~~k~iif~~~~~~-------------~~~l~~~l~~~g~~ 65 (138)
.-+.++|..+.+.|-++.|.++.... ...+...|+..|+.
T Consensus 53 pg~~e~L~~L~~~G~~~~ivTn~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~ 105 (211)
T 2gmw_A 53 DGVIDAMRELKKMGFALVVVTNQSGIARGKFTEAQFETLTEWMDWSLADRDVD 105 (211)
T ss_dssp TTHHHHHHHHHHTTCEEEEEEECTHHHHTSSCHHHHHHHHHHHHHHHHHTTCC
T ss_pred cCHHHHHHHHHHCCCeEEEEECcCCcCCCccCHHHHHHHHHHHHHHHHHcCCc
Confidence 34556677777788899999987742 35666777777764
No 301
>1yt8_A Thiosulfate sulfurtransferase; rhodanase domains, cyanide detoxification, structural genomics, PSI, protein structure initiative; 1.90A {Pseudomonas aeruginosa} SCOP: c.46.1.2 c.46.1.2 c.46.1.2 c.46.1.2
Probab=36.09 E-value=41 Score=25.46 Aligned_cols=36 Identities=19% Similarity=0.426 Sum_probs=29.5
Q ss_pred CCCeEEEEeccHHHHHHHHHHHhhcCCeEEEEeC-CC
Q psy2046 38 NGHRVLIFSQFIFVLDILGHYMDIRGWRHLRLDG-AT 73 (138)
Q Consensus 38 ~~~k~iif~~~~~~~~~l~~~l~~~g~~~~~i~g-~~ 73 (138)
.+.+++++|..-........+|...|+.+..+.| +.
T Consensus 321 ~~~~ivv~c~~g~rs~~aa~~L~~~G~~v~~l~G~G~ 357 (539)
T 1yt8_A 321 RGARLVLVDDDGVRANMSASWLAQMGWQVAVLDGLSE 357 (539)
T ss_dssp BTCEEEEECSSSSHHHHHHHHHHHTTCEEEEECSCCG
T ss_pred CCCeEEEEeCCCCcHHHHHHHHHHcCCeEEEecCCCh
Confidence 3678999998776677777889999998888998 64
No 302
>3hjh_A Transcription-repair-coupling factor; MFD, mutation frequency decline, ATP-binding, DNA DAMA repair, DNA-binding, helicase, hydrolase; 1.95A {Escherichia coli} PDB: 2b2n_A* 4dfc_A
Probab=36.04 E-value=25 Score=26.45 Aligned_cols=67 Identities=15% Similarity=0.016 Sum_probs=46.6
Q ss_pred CCCeEEEEeccHHHHHHHHHHHhhcCCeEEEEeCCCChHHHHHHHHHHhcCCCceEEEEeccccccccCcCccCEEEEeC
Q psy2046 38 NGHRVLIFSQFIFVLDILGHYMDIRGWRHLRLDGATQVSSRQELIDEYNRDQDLFAFLLSTKAGGLGINLTAADTVIIHD 117 (138)
Q Consensus 38 ~~~k~iif~~~~~~~~~l~~~l~~~g~~~~~i~g~~~~~~R~~~~~~F~~~~~~~vll~~~~~~~~Gl~l~~~~~vi~~~ 117 (138)
.+.++++.+.+....+.|.+.|...|+++..... .. .+..+ . +.+.......|..++...-+|+.+
T Consensus 381 ~~~rVvi~a~s~~r~erL~~~L~~~~i~~~~~~~-~~---------~~~~g-~---v~i~~g~L~~GF~~p~~klaVITE 446 (483)
T 3hjh_A 381 FDGPVVFSVESEGRREALGELLARIKIAPQRIMR-LD---------EASDR-G---RYLMIGAAEHGFVDTVRNLALICE 446 (483)
T ss_dssp CCSCEEEEESCSSTTTTTHHHHGGGTCCCEECSC-GG---------GCCTT-C---EEEEESCCCSCEEETTTTEEEEEH
T ss_pred CCCeEEEEeCChHHHHHHHHHHHHcCCCceecCc-hh---------hcCCC-c---EEEEEcccccCcccCCCCEEEEEc
Confidence 4679999999999999999999999987544322 11 12222 2 333346678899999888888765
Q ss_pred C
Q psy2046 118 V 118 (138)
Q Consensus 118 ~ 118 (138)
.
T Consensus 447 ~ 447 (483)
T 3hjh_A 447 S 447 (483)
T ss_dssp H
T ss_pred h
Confidence 4
No 303
>3pct_A Class C acid phosphatase; hydrolase, outer membrane; 1.85A {Pasteurella multocida}
Probab=35.96 E-value=1e+02 Score=21.08 Aligned_cols=41 Identities=15% Similarity=-0.042 Sum_probs=30.8
Q ss_pred HHHHHHHHHhhhCCCeEEEEeccHH--HHHHHHHHHhhcCCeE
Q psy2046 26 KKLDEILPDLKKNGHRVLIFSQFIF--VLDILGHYMDIRGWRH 66 (138)
Q Consensus 26 ~~l~~ll~~~~~~~~k~iif~~~~~--~~~~l~~~l~~~g~~~ 66 (138)
.-+.+++..+.+.|-++.|.++... ..+.....|+..|++.
T Consensus 104 pg~~ell~~L~~~G~~i~ivTgR~~~~~r~~T~~~L~~lGi~~ 146 (260)
T 3pct_A 104 PGAVEFSNYVNANGGTMFFVSNRRDDVEKAGTVDDMKRLGFTG 146 (260)
T ss_dssp TTHHHHHHHHHHTTCEEEEEEEEETTTSHHHHHHHHHHHTCCC
T ss_pred ccHHHHHHHHHHCCCeEEEEeCCCccccHHHHHHHHHHcCcCc
Confidence 3456677777788888888887655 4577888888889885
No 304
>1nm3_A Protein HI0572; hybrid, peroxiredoxin, glutaredoxin, electron transport; 2.80A {Haemophilus influenzae} SCOP: c.47.1.1 c.47.1.10
Probab=35.80 E-value=92 Score=20.38 Aligned_cols=61 Identities=7% Similarity=-0.022 Sum_probs=37.9
Q ss_pred hHHHHHHHHHHhhhCCCeEEEEec-cHHHHHHHHHHHhhcCCeEEEEeCCCChHHHHHHHHHH
Q psy2046 24 KLKKLDEILPDLKKNGHRVLIFSQ-FIFVLDILGHYMDIRGWRHLRLDGATQVSSRQELIDEY 85 (138)
Q Consensus 24 K~~~l~~ll~~~~~~~~k~iif~~-~~~~~~~l~~~l~~~g~~~~~i~g~~~~~~R~~~~~~F 85 (138)
-...+++.|....-...++++|+. ....+.....+|...|+++..++=... .+++...+..
T Consensus 154 ~~~~il~~l~~~~i~~~~i~ly~~~~Cp~C~~a~~~L~~~~i~~~~~~i~~~-~~~~~l~~~~ 215 (241)
T 1nm3_A 154 DADTMLKYLAPQHQVQESISIFTKPGCPFCAKAKQLLHDKGLSFEEIILGHD-ATIVSVRAVS 215 (241)
T ss_dssp SHHHHHHHHCTTSCCCCCEEEEECSSCHHHHHHHHHHHHHTCCCEEEETTTT-CCHHHHHHHT
T ss_pred CHHHHHHHhhhhccccceEEEEECCCChHHHHHHHHHHHcCCceEEEECCCc-hHHHHHHHHh
Confidence 345555555432223456777765 446788899999999999888766544 3344444444
No 305
>3egc_A Putative ribose operon repressor; structural genomics, unknown function, DNA-binding, transcri transcription regulation, PSI-2; 2.35A {Burkholderia thailandensis}
Probab=35.74 E-value=96 Score=20.60 Aligned_cols=11 Identities=27% Similarity=0.015 Sum_probs=4.7
Q ss_pred hcCCeEEEEeC
Q psy2046 61 IRGWRHLRLDG 71 (138)
Q Consensus 61 ~~g~~~~~i~g 71 (138)
..++..+.+.+
T Consensus 62 ~~~vdgiIi~~ 72 (291)
T 3egc_A 62 ERRVDGLILAP 72 (291)
T ss_dssp HTTCSEEEECC
T ss_pred HCCCCEEEEeC
Confidence 33444444444
No 306
>3olh_A MST, 3-mercaptopyruvate sulfurtransferase; structural genomics, structural genomics consortium, SGC, RH fold; 2.50A {Homo sapiens}
Probab=35.63 E-value=22 Score=24.76 Aligned_cols=49 Identities=6% Similarity=-0.074 Sum_probs=32.9
Q ss_pred HHHHHHHHHh-hhCCCeEEEEeccHHHHHHHHHHHhhcCCe-EEEEeCCCC
Q psy2046 26 KKLDEILPDL-KKNGHRVLIFSQFIFVLDILGHYMDIRGWR-HLRLDGATQ 74 (138)
Q Consensus 26 ~~l~~ll~~~-~~~~~k~iif~~~~~~~~~l~~~l~~~g~~-~~~i~g~~~ 74 (138)
..+.+++... ...++++|+||..-.........|...|++ +..+.|+..
T Consensus 240 ~~l~~~~~~~~~~~~~~iv~yC~sG~rs~~a~~~L~~~G~~~v~~~~Gg~~ 290 (302)
T 3olh_A 240 EEIRHLFQEKKVDLSKPLVATCGSGVTACHVALGAYLCGKPDVPIYDGSWV 290 (302)
T ss_dssp HHHHHHHHHTTCCTTSCEEEECSSSSTTHHHHHHHHTTTCCCCCEESSHHH
T ss_pred HHHHHHHHhcCCCCCCCEEEECCChHHHHHHHHHHHHcCCCCeeEeCCcHH
Confidence 3444455432 234578999998776666677778888984 677888654
No 307
>3kke_A LACI family transcriptional regulator; structural genomics, DNA-binding, transcription regulation, PSI-2; 2.20A {Mycobacterium smegmatis str}
Probab=35.23 E-value=1e+02 Score=20.73 Aligned_cols=13 Identities=8% Similarity=-0.084 Sum_probs=5.8
Q ss_pred HhhcCCeEEEEeC
Q psy2046 59 MDIRGWRHLRLDG 71 (138)
Q Consensus 59 l~~~g~~~~~i~g 71 (138)
|...++.-+.+.+
T Consensus 67 l~~~~vdgiI~~~ 79 (303)
T 3kke_A 67 VSEGRVDGVLLQR 79 (303)
T ss_dssp HHSCSSSEEEECC
T ss_pred HHhCCCcEEEEec
Confidence 3334455444444
No 308
>3mwd_B ATP-citrate synthase; ATP-grAsp, phosphohistidine, organic acid, lyase, transferas; HET: CIT; 2.10A {Homo sapiens} PDB: 3mwe_B*
Probab=35.06 E-value=1.2e+02 Score=21.60 Aligned_cols=58 Identities=10% Similarity=-0.065 Sum_probs=44.7
Q ss_pred CeEEEEeccHHHHHHHHHHHhhcCC--eEEEEeCCC--ChHHHHHHHHHHhcCCCceEEEEe
Q psy2046 40 HRVLIFSQFIFVLDILGHYMDIRGW--RHLRLDGAT--QVSSRQELIDEYNRDQDLFAFLLS 97 (138)
Q Consensus 40 ~k~iif~~~~~~~~~l~~~l~~~g~--~~~~i~g~~--~~~~R~~~~~~F~~~~~~~vll~~ 97 (138)
.++=+++++-.....+.+++...|+ ....-.|+. ....=.+.++.|.+++..+++++.
T Consensus 169 G~vgivSqSG~l~~~i~~~~~~~g~G~S~~VsiGn~~~~d~~~~D~l~~~~~Dp~T~~I~l~ 230 (334)
T 3mwd_B 169 GSVAYVSRSGGMSNELNNIISRTTDGVYEGVAIGGDRYPGSTFMDHVLRYQDTPGVKMIVVL 230 (334)
T ss_dssp CSEEEEESCHHHHHHHHHHHHHHSSCEEEEEECCSSSSCSSCHHHHHHHHHTCTTCCEEEEE
T ss_pred CCEEEEeCchHHHHHHHHHHHhcCCCeEEEEECCCCccCCCCHHHHHHHHhcCCCCCEEEEE
Confidence 3788999999888888888877755 455555665 556677899999988888888776
No 309
>3h11_B Caspase-8; cell death, apoptosis, caspase, alternative splicing, HOST- virus interaction, polymorphism, cytoplasm, disease mutation; 1.90A {Homo sapiens} SCOP: c.17.1.1 PDB: 2k7z_A 1i4e_B 2fun_B 2c2z_B*
Probab=34.93 E-value=1.1e+02 Score=21.01 Aligned_cols=37 Identities=11% Similarity=0.099 Sum_probs=30.6
Q ss_pred HHHHHHHHHHhhcCCeEEEEeCCCChHHHHHHHHHHhc
Q psy2046 50 FVLDILGHYMDIRGWRHLRLDGATQVSSRQELIDEYNR 87 (138)
Q Consensus 50 ~~~~~l~~~l~~~g~~~~~i~g~~~~~~R~~~~~~F~~ 87 (138)
.+.+.|...|+..|+.+ .++-..+..+-.+.+++|..
T Consensus 49 ~D~~~L~~~f~~LGF~V-~~~~dlt~~em~~~l~~~~~ 85 (271)
T 3h11_B 49 LDAGALTTTFEELHFEI-KPHDDCTVEQIYEILKIYQL 85 (271)
T ss_dssp HHHHHHHHHHHHTTCEE-EEEESCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCEE-EEEeCCCHHHHHHHHHHHHH
Confidence 56889999999999996 45566888888899999974
No 310
>3f6c_A Positive transcription regulator EVGA; structural genomics, PSI-2, protein structure initiative, PO transcription regulator EVGA; 1.45A {Escherichia coli k-12}
Probab=34.85 E-value=64 Score=18.32 Aligned_cols=91 Identities=9% Similarity=-0.018 Sum_probs=45.4
Q ss_pred CCCeEE-EEeccHHHHHHHHHHHhhcCCeEEEEeCCCChHHHHHHHHHHhc-CCCceEEEEeccccc----cccCcCccC
Q psy2046 38 NGHRVL-IFSQFIFVLDILGHYMDIRGWRHLRLDGATQVSSRQELIDEYNR-DQDLFAFLLSTKAGG----LGINLTAAD 111 (138)
Q Consensus 38 ~~~k~i-if~~~~~~~~~l~~~l~~~g~~~~~i~g~~~~~~R~~~~~~F~~-~~~~~vll~~~~~~~----~Gl~l~~~~ 111 (138)
.+-.++ .+.+..+....+ .......+.++-.++...-.+.++..+. .+...+++++..... ..+.. +++
T Consensus 24 ~g~~v~~~~~~~~~a~~~~----~~~~~dlii~d~~l~~~~g~~~~~~l~~~~~~~~ii~~s~~~~~~~~~~~~~~-g~~ 98 (134)
T 3f6c_A 24 NDIEILAELTEGGSAVQRV----ETLKPDIVIIDVDIPGVNGIQVLETLRKRQYSGIIIIVSAKNDHFYGKHCADA-GAN 98 (134)
T ss_dssp TTEEEEEEESSSTTHHHHH----HHHCCSEEEEETTCSSSCHHHHHHHHHHTTCCSEEEEEECC---CTHHHHHHT-TCS
T ss_pred CCcEEEEEcCCHHHHHHHH----HhcCCCEEEEecCCCCCChHHHHHHHHhcCCCCeEEEEeCCCChHHHHHHHHh-CCC
Confidence 344454 344444433333 3345667777766665555556666553 234445555433221 11111 233
Q ss_pred EEEEeCCCCCccchhHHHHHHhhc
Q psy2046 112 TVIIHDVDFNPYNDKQAEDRCHRV 135 (138)
Q Consensus 112 ~vi~~~~~~~~~~~~Q~~gR~~R~ 135 (138)
.+ +.-|.++....+++.++.+-
T Consensus 99 ~~--l~kp~~~~~l~~~i~~~~~~ 120 (134)
T 3f6c_A 99 GF--VSKKEGMNNIIAAIEAAKNG 120 (134)
T ss_dssp EE--EEGGGCTHHHHHHHHHHHTT
T ss_pred EE--EeCCCCHHHHHHHHHHHHCC
Confidence 32 33467788888888777553
No 311
>3cfy_A Putative LUXO repressor protein; structural genomics, unknown function, uncharacterized protein, signal receiver domain; 2.50A {Vibrio parahaemolyticus rimd 2210633}
Probab=34.79 E-value=63 Score=18.68 Aligned_cols=90 Identities=11% Similarity=0.010 Sum_probs=44.2
Q ss_pred CCCeEEEEeccHHHHHHHHHHHhhcCCeEEEEeCCCChHHHHHHHHHHhc-CCCceEEEEeccccc----cccCcCccCE
Q psy2046 38 NGHRVLIFSQFIFVLDILGHYMDIRGWRHLRLDGATQVSSRQELIDEYNR-DQDLFAFLLSTKAGG----LGINLTAADT 112 (138)
Q Consensus 38 ~~~k~iif~~~~~~~~~l~~~l~~~g~~~~~i~g~~~~~~R~~~~~~F~~-~~~~~vll~~~~~~~----~Gl~l~~~~~ 112 (138)
.+..+..+.+..+.++.+ .......+.++-.++...-.+.++..+. .+...+++++..... ..+.. ++..
T Consensus 27 ~g~~v~~~~~~~~a~~~l----~~~~~dlvllD~~l~~~~g~~l~~~l~~~~~~~~ii~ls~~~~~~~~~~~~~~-ga~~ 101 (137)
T 3cfy_A 27 EPYDIFHVETGRDAIQFI----ERSKPQLIILDLKLPDMSGEDVLDWINQNDIPTSVIIATAHGSVDLAVNLIQK-GAED 101 (137)
T ss_dssp SSSEEEEESSHHHHHHHH----HHHCCSEEEECSBCSSSBHHHHHHHHHHTTCCCEEEEEESSCCHHHHHHHHHT-TCSE
T ss_pred cCceEEEeCCHHHHHHHH----HhcCCCEEEEecCCCCCCHHHHHHHHHhcCCCCCEEEEEecCcHHHHHHHHHC-CccE
Confidence 355555444433333333 3345567777665554444455555543 234445555433211 11111 2322
Q ss_pred EEEeCCCCCccchhHHHHHHhh
Q psy2046 113 VIIHDVDFNPYNDKQAEDRCHR 134 (138)
Q Consensus 113 vi~~~~~~~~~~~~Q~~gR~~R 134 (138)
++.-|+++....+++.++.+
T Consensus 102 --~l~KP~~~~~L~~~i~~~~~ 121 (137)
T 3cfy_A 102 --FLEKPINADRLKTSVALHLK 121 (137)
T ss_dssp --EEESSCCHHHHHHHHHHHHH
T ss_pred --EEeCCCCHHHHHHHHHHHHH
Confidence 23457788888887776643
No 312
>3uug_A Multiple sugar-binding periplasmic receptor CHVE; periplasmic binding protein, sugar-binding protein, sugar binding protein; HET: BDP; 1.75A {Agrobacterium tumefaciens} PDB: 3urm_A*
Probab=34.52 E-value=1.1e+02 Score=20.78 Aligned_cols=51 Identities=8% Similarity=0.109 Sum_probs=22.2
Q ss_pred hhCCCeEEEEeccHH---HHHHHHHHHhhcCCeEEEEeCCCChHHHHHHHHHHhcC
Q psy2046 36 KKNGHRVLIFSQFIF---VLDILGHYMDIRGWRHLRLDGATQVSSRQELIDEYNRD 88 (138)
Q Consensus 36 ~~~~~k~iif~~~~~---~~~~l~~~l~~~g~~~~~i~g~~~~~~R~~~~~~F~~~ 88 (138)
.+.|-.++++..... ....+...+ ..++....+.+..+ ..-...++.....
T Consensus 30 ~~~g~~~~~~~~~~~~~~~~~~i~~~~-~~~vdgiIi~~~~~-~~~~~~~~~~~~~ 83 (330)
T 3uug_A 30 QEAGYKTDLQYADDDIPNQLSQIENMV-TKGVKVLVIASIDG-TTLSDVLKQAGEQ 83 (330)
T ss_dssp HHTTCEEEEEECTTCHHHHHHHHHHHH-HHTCSEEEECCSSG-GGGHHHHHHHHHT
T ss_pred HHcCCEEEEeeCCCCHHHHHHHHHHHH-HcCCCEEEEEcCCc-hhHHHHHHHHHHC
Confidence 344556655543221 123333333 34566555555432 2223344444443
No 313
>3i2v_A Adenylyltransferase and sulfurtransferase MOCS3; rhodanese, UBA4, structural genomics, ubiquitin biology, structural genomics consortium, SGC; 1.25A {Homo sapiens}
Probab=34.24 E-value=28 Score=20.25 Aligned_cols=34 Identities=3% Similarity=-0.141 Sum_probs=25.3
Q ss_pred eEEEEeccHHHHHHHHHHHhhc------CC-eEEEEeCCCC
Q psy2046 41 RVLIFSQFIFVLDILGHYMDIR------GW-RHLRLDGATQ 74 (138)
Q Consensus 41 k~iif~~~~~~~~~l~~~l~~~------g~-~~~~i~g~~~ 74 (138)
.++++|..-.........|... |. ++..+.|+..
T Consensus 74 ~ivv~C~~G~rs~~a~~~L~~~gg~~~~G~~~v~~l~GG~~ 114 (127)
T 3i2v_A 74 PIYVICKLGNDSQKAVKILQSLSAAQELDPLTVRDVVGGLM 114 (127)
T ss_dssp EEEEECSSSSHHHHHHHHHHHHHHTTSSSCEEEEEETTHHH
T ss_pred eEEEEcCCCCcHHHHHHHHHHhhccccCCCceEEEecCCHH
Confidence 8999998877667777788777 34 5677888664
No 314
>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14
Probab=34.22 E-value=48 Score=22.49 Aligned_cols=31 Identities=16% Similarity=0.074 Sum_probs=26.0
Q ss_pred ccCchHHHHHHHHHHhhhCCCeEEEEeccHH
Q psy2046 20 VESGKLKKLDEILPDLKKNGHRVLIFSQFIF 50 (138)
Q Consensus 20 ~~s~K~~~l~~ll~~~~~~~~k~iif~~~~~ 50 (138)
+.++|-..++..+......+.++++|.....
T Consensus 28 MgsGKTT~lL~~~~r~~~~g~kvli~kp~~D 58 (234)
T 2orv_A 28 MFSGKSTELMRRVRRFQIAQYKCLVIKYAKD 58 (234)
T ss_dssp TTSCHHHHHHHHHHHHHTTTCCEEEEEETTC
T ss_pred CCCcHHHHHHHHHHHHHHCCCeEEEEeecCC
Confidence 3589999999999988888999999986553
No 315
>2fp4_A Succinyl-COA ligase [GDP-forming] alpha-chain, mitochondrial; active site phosphohistidine residue; HET: NEP GTP; 2.08A {Sus scrofa} SCOP: c.2.1.8 c.23.4.1 PDB: 2fpg_A* 2fpi_A* 2fpp_A* 1euc_A* 1eud_A*
Probab=33.98 E-value=1.2e+02 Score=21.18 Aligned_cols=61 Identities=15% Similarity=0.022 Sum_probs=44.6
Q ss_pred eEEEEeccHHHHHHHHHHHhhcCCe--EEEEeCCCC--hHHHHHHHHHHhcCCCceEEEEecccc
Q psy2046 41 RVLIFSQFIFVLDILGHYMDIRGWR--HLRLDGATQ--VSSRQELIDEYNRDQDLFAFLLSTKAG 101 (138)
Q Consensus 41 k~iif~~~~~~~~~l~~~l~~~g~~--~~~i~g~~~--~~~R~~~~~~F~~~~~~~vll~~~~~~ 101 (138)
++=+++++-.....+..++...|+. ...-.|+.. .-.=.+.++.|.+++..+++++....+
T Consensus 154 ~va~vSqSG~l~~~~~~~~~~~g~G~S~~vs~G~~~~~~~~~~d~l~~~~~Dp~T~~I~l~~E~~ 218 (305)
T 2fp4_A 154 RIGIVSRSGTLTYEAVHQTTQVGLGQSLCVGIGGDPFNGTDFTDCLEIFLNDPATEGIILIGEIG 218 (305)
T ss_dssp EEEEEESCSHHHHHHHHHHHHTTCCEEEEEECCSSSSCSCCHHHHHHHHHHCTTCCEEEEEEESS
T ss_pred CEEEEecchHHHHHHHHHHHhcCCCeeEEeccCCCcCCCCCHHHHHHHHhcCCCCcEEEEEEecC
Confidence 5778888888888888888776554 445555553 345678899998888888888776655
No 316
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=33.85 E-value=1.2e+02 Score=21.07 Aligned_cols=88 Identities=5% Similarity=-0.036 Sum_probs=50.4
Q ss_pred ccCchHHHHHH-HHHHhhh--CCCeEEEEeccHHHHHHHHHHHhh----cCCeEEEEeCCCChHHHHHHHHHHhcCCCce
Q psy2046 20 VESGKLKKLDE-ILPDLKK--NGHRVLIFSQFIFVLDILGHYMDI----RGWRHLRLDGATQVSSRQELIDEYNRDQDLF 92 (138)
Q Consensus 20 ~~s~K~~~l~~-ll~~~~~--~~~k~iif~~~~~~~~~l~~~l~~----~g~~~~~i~g~~~~~~R~~~~~~F~~~~~~~ 92 (138)
.-++|.....- ++..+.. .+.+++|.+++..-+..+.+.+++ .++....++|+...... .....
T Consensus 53 TGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~ 123 (395)
T 3pey_A 53 SGTGKTAAFSLTMLTRVNPEDASPQAICLAPSRELARQTLEVVQEMGKFTKITSQLIVPDSFEKNK---------QINAQ 123 (395)
T ss_dssp TTSCHHHHHHHHHHHHCCTTCCSCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEEEESTTSSCTTS---------CBCCS
T ss_pred CCCcHHHHHHHHHHHHhccCCCCccEEEECCCHHHHHHHHHHHHHHhcccCeeEEEEecCchhhhc---------cCCCC
Confidence 45678765443 3333322 356899999999887777777665 35666777766532211 11334
Q ss_pred EEEEeccccc-----cccCcCccCEEEEe
Q psy2046 93 AFLLSTKAGG-----LGINLTAADTVIIH 116 (138)
Q Consensus 93 vll~~~~~~~-----~Gl~l~~~~~vi~~ 116 (138)
++++++...- ..+++...+.+|+=
T Consensus 124 iiv~T~~~l~~~~~~~~~~~~~~~~iIiD 152 (395)
T 3pey_A 124 VIVGTPGTVLDLMRRKLMQLQKIKIFVLD 152 (395)
T ss_dssp EEEECHHHHHHHHHTTCBCCTTCCEEEEE
T ss_pred EEEEcHHHHHHHHHcCCcccccCCEEEEE
Confidence 5666555432 23445566666653
No 317
>3o74_A Fructose transport system repressor FRUR; dual transcriptional regulator, DNA, transcription; 2.00A {Pseudomonas putida} PDB: 3o75_A*
Probab=33.33 E-value=1e+02 Score=20.12 Aligned_cols=38 Identities=18% Similarity=0.087 Sum_probs=17.5
Q ss_pred hhCCCeEEEEeccHH--HHHHHHHHHhhcCCeEEEEeCCC
Q psy2046 36 KKNGHRVLIFSQFIF--VLDILGHYMDIRGWRHLRLDGAT 73 (138)
Q Consensus 36 ~~~~~k~iif~~~~~--~~~~l~~~l~~~g~~~~~i~g~~ 73 (138)
.+.|-.++++..... ....+.+.+...++....+.+..
T Consensus 29 ~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~ 68 (272)
T 3o74_A 29 RARGYQLLIASSDDQPDSERQLQQLFRARRCDALFVASCL 68 (272)
T ss_dssp HHTTCEEEEEECTTCHHHHHHHHHHHHHTTCSEEEECCCC
T ss_pred HHCCCEEEEEeCCCCHHHHHHHHHHHHHcCCCEEEEecCc
Confidence 344656666553321 12223333444566655555543
No 318
>2wm8_A MDP-1, magnesium-dependent phosphatase 1; haloacid dehalogenase, protein phosphatase, hydrolase, magne metal-binding; 1.75A {Homo sapiens} PDB: 1u7o_A 1u7p_A
Probab=33.12 E-value=88 Score=19.40 Aligned_cols=63 Identities=5% Similarity=0.123 Sum_probs=41.8
Q ss_pred CchHHHHHHHHHHhhhCCCeEEEEeccHHHHHHHHHHHhhcCCeEEEEeCCCChHHHHHHHHHHhcC
Q psy2046 22 SGKLKKLDEILPDLKKNGHRVLIFSQFIFVLDILGHYMDIRGWRHLRLDGATQVSSRQELIDEYNRD 88 (138)
Q Consensus 22 s~K~~~l~~ll~~~~~~~~k~iif~~~~~~~~~l~~~l~~~g~~~~~i~g~~~~~~R~~~~~~F~~~ 88 (138)
.+|...+..+++.+.-..+.++.+-+....+.. .+..|+.++.+..+....+-.+.+..|...
T Consensus 120 ~~k~~~~~~~~~~~~~~~~~~~~igD~~~Di~~----a~~aG~~~i~v~~g~~~~~~~~~l~~~~~~ 182 (187)
T 2wm8_A 120 GSKITHFERLQQKTGIPFSQMIFFDDERRNIVD----VSKLGVTCIHIQNGMNLQTLSQGLETFAKA 182 (187)
T ss_dssp SCHHHHHHHHHHHHCCCGGGEEEEESCHHHHHH----HHTTTCEEEECSSSCCHHHHHHHHHHHHHT
T ss_pred CchHHHHHHHHHHcCCChHHEEEEeCCccChHH----HHHcCCEEEEECCCCChHHHHHHHHHHHHh
Confidence 457666666766654445678888877554333 244688888777777777777777777654
No 319
>2ayx_A Sensor kinase protein RCSC; two independent structural domains, transferase; NMR {Escherichia coli} SCOP: c.23.1.1 c.23.1.6 PDB: 2ayz_A 2ayy_A
Probab=33.02 E-value=41 Score=22.41 Aligned_cols=34 Identities=15% Similarity=0.191 Sum_probs=29.1
Q ss_pred CCCeEEEEeccHHHHHHHHHHHhhcCCeEEEEeC
Q psy2046 38 NGHRVLIFSQFIFVLDILGHYMDIRGWRHLRLDG 71 (138)
Q Consensus 38 ~~~k~iif~~~~~~~~~l~~~l~~~g~~~~~i~g 71 (138)
.+.+++|..+.......+...|...|+.+....+
T Consensus 10 ~~~~vlvv~d~~~~~~~l~~~L~~~g~~v~~~~~ 43 (254)
T 2ayx_A 10 SGKRCWLAVRNASLCQFLETSLQRSGIVVTTYEG 43 (254)
T ss_dssp TTEEEEEECCCHHHHHHHHHHHTTTTEEEEECSS
T ss_pred CCCEEEEEcCCHHHHHHHHHHHHHCCCEEEEecC
Confidence 3679999999999999999999999988766554
No 320
>1m72_A Caspase-1; caspase, cysteine protease, hydrolase-hydrolase inhibitor CO; 2.30A {Spodoptera frugiperda} SCOP: c.17.1.1 PDB: 3sip_B
Probab=32.92 E-value=1.2e+02 Score=20.83 Aligned_cols=47 Identities=13% Similarity=0.130 Sum_probs=37.4
Q ss_pred eEEEEecc-------------HHHHHHHHHHHhhcCCeEEEEeCCCChHHHHHHHHHHhcC
Q psy2046 41 RVLIFSQF-------------IFVLDILGHYMDIRGWRHLRLDGATQVSSRQELIDEYNRD 88 (138)
Q Consensus 41 k~iif~~~-------------~~~~~~l~~~l~~~g~~~~~i~g~~~~~~R~~~~~~F~~~ 88 (138)
-.|||.+. ..+.+.|++.|+..|+.+ .++-..+..+-.+.+++|...
T Consensus 34 ~aLIInn~~f~~~~l~~R~g~~~Da~~L~~~f~~LGF~V-~~~~dlt~~em~~~l~~~~~~ 93 (272)
T 1m72_A 34 MAIIFNHEHFDIHSLKSRTGTNVDSDNLSKVLKTLGFKV-TVFPNLKSEEINKFIQQTAEM 93 (272)
T ss_dssp EEEEEECCCCSSTTCCCCTTHHHHHHHHHHHHHHTTCEE-EEEESCCHHHHHHHHHHHHTS
T ss_pred EEEEEechhcCCCCcccCCCCHHHHHHHHHHHHHCCCEE-EEecCcCHHHHHHHHHHHHHh
Confidence 46777764 577889999999999996 455568888899999999743
No 321
>1jr5_A 10 kDa anti-sigma factor; all-alpha, helix-turn-helix, coiled-coil, transcription; NMR {Enterobacteria phage T4} SCOP: a.150.1.1 PDB: 1tkv_A 1tl6_A 1tlh_A
Probab=32.89 E-value=14 Score=21.03 Aligned_cols=38 Identities=16% Similarity=0.273 Sum_probs=25.9
Q ss_pred HHHHHHHhhcCCe----------EEEEeCCCChHHHHHHHHHHhcCCC
Q psy2046 53 DILGHYMDIRGWR----------HLRLDGATQVSSRQELIDEYNRDQD 90 (138)
Q Consensus 53 ~~l~~~l~~~g~~----------~~~i~g~~~~~~R~~~~~~F~~~~~ 90 (138)
+..-+.|.+.|++ +..+.++.++++|.++++.|+.|-.
T Consensus 31 ~~FIaFLNElG~t~~G~~~t~~sfr~m~~~lt~~ek~elieeFn~G~e 78 (90)
T 1jr5_A 31 ANFIAFLNEIGVTHEGRKLNQNSFRKIVSELTQEDKKTLIDEFNEGFE 78 (90)
T ss_dssp HHHHHHHHHHTCCSSSSCCCSHHHHHHHHTCCHHHHHHHHTTSSSSST
T ss_pred HHHHHHHHHcCCCCCcchhHHHHHHHHHHHCCHHHHHHHHHHHhccch
Confidence 3455666666662 1234445899999999999997743
No 322
>3h7a_A Short chain dehydrogenase; oxidoreductase, PSI-2, NYSGXRC, structural genomics, protein structure initiative; 1.87A {Rhodopseudomonas palustris}
Probab=32.62 E-value=1.1e+02 Score=20.25 Aligned_cols=65 Identities=12% Similarity=0.033 Sum_probs=42.7
Q ss_pred HHHHhhhCCCeEEEEeccHHHHHHHHHHHhhcCCeEEEEeCCCCh-HHHHHHHHHHhcCCCceEEE
Q psy2046 31 ILPDLKKNGHRVLIFSQFIFVLDILGHYMDIRGWRHLRLDGATQV-SSRQELIDEYNRDQDLFAFL 95 (138)
Q Consensus 31 ll~~~~~~~~k~iif~~~~~~~~~l~~~l~~~g~~~~~i~g~~~~-~~R~~~~~~F~~~~~~~vll 95 (138)
+.+.+.+.|.++++.......++.+.+.++..+-.+..+.++.+. ++-.+.++.........+++
T Consensus 23 ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~g~id~lv 88 (252)
T 3h7a_A 23 IAKKFAAEGFTVFAGRRNGEKLAPLVAEIEAAGGRIVARSLDARNEDEVTAFLNAADAHAPLEVTI 88 (252)
T ss_dssp HHHHHHHTTCEEEEEESSGGGGHHHHHHHHHTTCEEEEEECCTTCHHHHHHHHHHHHHHSCEEEEE
T ss_pred HHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEECcCCCHHHHHHHHHHHHhhCCceEEE
Confidence 334446678899888887777888888888777788888887654 34444555554322333333
No 323
>1jbq_A B, cystathionine beta-synthase, serine sulfhydrase; fold type II of PLP enzymes, lyase; HET: HEM PLP; 2.60A {Homo sapiens} SCOP: c.79.1.1 PDB: 1m54_A*
Probab=32.61 E-value=1.5e+02 Score=21.91 Aligned_cols=64 Identities=16% Similarity=0.113 Sum_probs=45.0
Q ss_pred CchHHHHHHHHHHhhhCCC----eEEEEeccHHHHHHHHHHHhhcCCeEEEEeCCCChHHHHHHHHHH
Q psy2046 22 SGKLKKLDEILPDLKKNGH----RVLIFSQFIFVLDILGHYMDIRGWRHLRLDGATQVSSRQELIDEY 85 (138)
Q Consensus 22 s~K~~~l~~ll~~~~~~~~----k~iif~~~~~~~~~l~~~l~~~g~~~~~i~g~~~~~~R~~~~~~F 85 (138)
|-|...+..++.+..+.+. ..||=+..-+....++.+-...|+++..+-.......+...++.|
T Consensus 139 SfKdR~a~~~i~~a~~~G~l~~g~tVV~aSsGN~G~AlA~aaa~~Gi~~~IvmP~~~s~~k~~~l~~~ 206 (435)
T 1jbq_A 139 SVKDRISLRMIEDAERDGTLKPGDTIIEPTSGNTGIGLALAAAVRGYRCIIVMPEKMSSEKVDVLRAL 206 (435)
T ss_dssp BTHHHHHHHHHHHHHHHTCSCTTCEEEEECSSHHHHHHHHHHHHHTCEEEEEECSCCCHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHHHcCCCCCCCEEEEeCCCHHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHhC
Confidence 4488888877776655552 345544455777788888888999987766655556777788887
No 324
>4fn4_A Short chain dehydrogenase; NADH-binding, rossmann fold, oxidoreductase; HET: NAD; 1.75A {Sulfolobus acidocaldarius}
Probab=32.32 E-value=1.2e+02 Score=20.57 Aligned_cols=43 Identities=12% Similarity=0.008 Sum_probs=35.2
Q ss_pred HHhhhCCCeEEEEeccHHHHHHHHHHHhhcCCeEEEEeCCCCh
Q psy2046 33 PDLKKNGHRVLIFSQFIFVLDILGHYMDIRGWRHLRLDGATQV 75 (138)
Q Consensus 33 ~~~~~~~~k~iif~~~~~~~~~l~~~l~~~g~~~~~i~g~~~~ 75 (138)
+.+.++|-++++.....+.++.+.+.++..|.++..+..+.+.
T Consensus 25 ~~la~~Ga~Vv~~~~~~~~~~~~~~~i~~~g~~~~~~~~Dvt~ 67 (254)
T 4fn4_A 25 KKFALNDSIVVAVELLEDRLNQIVQELRGMGKEVLGVKADVSK 67 (254)
T ss_dssp HHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTS
T ss_pred HHHHHcCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEccCCC
Confidence 3446778899888888888899999998888888888888754
No 325
>2cq9_A GLRX2 protein, glutaredoxin 2; glutathione-S-transferase, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=32.27 E-value=80 Score=18.63 Aligned_cols=51 Identities=10% Similarity=-0.091 Sum_probs=34.4
Q ss_pred eEEEEe-ccHHHHHHHHHHHhhcCCeEEEEeCCCC---hHHHHHHHHHHhcCCCc
Q psy2046 41 RVLIFS-QFIFVLDILGHYMDIRGWRHLRLDGATQ---VSSRQELIDEYNRDQDL 91 (138)
Q Consensus 41 k~iif~-~~~~~~~~l~~~l~~~g~~~~~i~g~~~---~~~R~~~~~~F~~~~~~ 91 (138)
++++|+ .+...+..+...|...++.+..++-... +..+..+.+.+.....+
T Consensus 28 ~vvvf~~~~Cp~C~~~~~~L~~~~i~~~~vdid~~~~~~~~~~~l~~~~g~~~vP 82 (130)
T 2cq9_A 28 CVVIFSKTSCSYCTMAKKLFHDMNVNYKVVELDLLEYGNQFQDALYKMTGERTVP 82 (130)
T ss_dssp SEEEEECSSCSHHHHHHHHHHHHTCCCEEEETTTSTTHHHHHHHHHHHHSSCCSS
T ss_pred cEEEEEcCCChHHHHHHHHHHHcCCCcEEEECcCCcCcHHHHHHHHHHhCCCCcC
Confidence 677777 4446788899999999999888876654 33344555666433334
No 326
>2hze_A Glutaredoxin-1; thioredoxin fold, arsenic, dimethylarsenite., electron trans oxidoreductase; 1.80A {Ectromelia virus} PDB: 2hzf_A 2hze_B
Probab=31.78 E-value=74 Score=18.14 Aligned_cols=53 Identities=9% Similarity=-0.073 Sum_probs=35.8
Q ss_pred CCeEEEEec-cHHHHHHHHHHHhhcCCe---EEEEeCCCCh---HHHHHHHHHHhcCCCc
Q psy2046 39 GHRVLIFSQ-FIFVLDILGHYMDIRGWR---HLRLDGATQV---SSRQELIDEYNRDQDL 91 (138)
Q Consensus 39 ~~k~iif~~-~~~~~~~l~~~l~~~g~~---~~~i~g~~~~---~~R~~~~~~F~~~~~~ 91 (138)
..++++|+. +......+...|.+.+++ +..++=...+ ..+..+.+.+.....+
T Consensus 18 ~~~vv~f~~~~Cp~C~~~~~~L~~~~~~~~~~~~vdi~~~~~~~~~~~~l~~~~g~~~vP 77 (114)
T 2hze_A 18 NNKVTIFVKYTCPFCRNALDILNKFSFKRGAYEIVDIKEFKPENELRDYFEQITGGKTVP 77 (114)
T ss_dssp TTCEEEEECTTCHHHHHHHHHHTTSCBCTTSEEEEEGGGSSSHHHHHHHHHHHHSCCSSC
T ss_pred cCCEEEEEeCCChhHHHHHHHHHHcCCCcCceEEEEccCCCChHHHHHHHHHHhCCCCcC
Confidence 346777775 446788999999999988 8888765543 4455566666544344
No 327
>2zxr_A Single-stranded DNA specific exonuclease RECJ; DNA repair, hydrolase; 2.15A {Thermus thermophilus} PDB: 2zxo_A 2zxp_A 1ir6_A
Probab=31.77 E-value=1.3e+02 Score=23.88 Aligned_cols=46 Identities=15% Similarity=0.173 Sum_probs=32.8
Q ss_pred chHHHHHHHHHHhhhCCCeEEEEeccHHH----HHHHHHHHhhcCCeEEE
Q psy2046 23 GKLKKLDEILPDLKKNGHRVLIFSQFIFV----LDILGHYMDIRGWRHLR 68 (138)
Q Consensus 23 ~K~~~l~~ll~~~~~~~~k~iif~~~~~~----~~~l~~~l~~~g~~~~~ 68 (138)
+.+....+.+.+..+++++++||.++..+ .-.+...|+..|..+..
T Consensus 56 ~dm~~Av~~i~~aI~~~ekI~I~GH~D~DGi~Saa~L~~~L~~lG~~v~~ 105 (666)
T 2zxr_A 56 KGLREAAALLEEALRQGKRIRVHGDYDADGLTGTAILVRGLAALGADVHP 105 (666)
T ss_dssp TTHHHHHHHHHHHHHTTCEEEEECCSSHHHHHHHHHHHHHHHHTTCEEEE
T ss_pred hhHHHHHHHHHHHHHcCCeEEEEeccCCchHHHHHHHHHHHHHcCCcEEE
Confidence 46777777777777888999999999432 33466677777876543
No 328
>3ntd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; COA, persulfide reductase, rhodanese; HET: COA FAD; 1.99A {Shewanella loihica} PDB: 3nta_A* 3nt6_A*
Probab=31.64 E-value=45 Score=25.08 Aligned_cols=38 Identities=21% Similarity=0.267 Sum_probs=31.2
Q ss_pred hCCCeEEEEeccHHHHHHHHHHHhhcCCeEEEEeCCCC
Q psy2046 37 KNGHRVLIFSQFIFVLDILGHYMDIRGWRHLRLDGATQ 74 (138)
Q Consensus 37 ~~~~k~iif~~~~~~~~~l~~~l~~~g~~~~~i~g~~~ 74 (138)
..++++++||..-.........|+..|+++..+.|+..
T Consensus 522 ~~~~~iv~~c~~g~rs~~a~~~l~~~G~~v~~l~gG~~ 559 (565)
T 3ntd_A 522 PKDKEIIIFSQVGLRGNVAYRQLVNNGYRARNLIGGYR 559 (565)
T ss_dssp CTTSEEEEECSSSHHHHHHHHHHHHTTCCEEEETTHHH
T ss_pred CCcCeEEEEeCCchHHHHHHHHHHHcCCCEEEEcChHH
Confidence 34678999999887788888999999998888888653
No 329
>3k4h_A Putative transcriptional regulator; structural genomics, protein structure INI NEW YORK structural genomix research consortium; HET: MAL; 2.80A {Bacillus cytotoxicus nvh 391-98}
Probab=31.64 E-value=1.1e+02 Score=20.19 Aligned_cols=38 Identities=8% Similarity=-0.053 Sum_probs=17.6
Q ss_pred hhCCCeEEEEeccHH--HHHHHHHHHhhcCCeEEEEeCCC
Q psy2046 36 KKNGHRVLIFSQFIF--VLDILGHYMDIRGWRHLRLDGAT 73 (138)
Q Consensus 36 ~~~~~k~iif~~~~~--~~~~l~~~l~~~g~~~~~i~g~~ 73 (138)
.+.|-.++++..... ....+.+.+...++..+.+.+..
T Consensus 40 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~vdgiIi~~~~ 79 (292)
T 3k4h_A 40 HVEGYALYMSTGETEEEIFNGVVKMVQGRQIGGIILLYSR 79 (292)
T ss_dssp HHTTCEEEECCCCSHHHHHHHHHHHHHTTCCCEEEESCCB
T ss_pred HHcCCEEEEEeCCCCHHHHHHHHHHHHcCCCCEEEEeCCC
Confidence 344556655543321 11233344444566665655543
No 330
>3eod_A Protein HNR; response regulator, phosphoprotein, two-component regulatory system, signaling protein; 1.75A {Escherichia coli K12}
Probab=31.46 E-value=73 Score=17.97 Aligned_cols=17 Identities=6% Similarity=-0.099 Sum_probs=8.5
Q ss_pred CCCC-CccchhHHHHHHh
Q psy2046 117 DVDF-NPYNDKQAEDRCH 133 (138)
Q Consensus 117 ~~~~-~~~~~~Q~~gR~~ 133 (138)
.-|+ ++....+++.++.
T Consensus 107 ~KP~~~~~~l~~~i~~~l 124 (130)
T 3eod_A 107 LKPVKDLNRLREMVFACL 124 (130)
T ss_dssp ESCC---CHHHHHHHHHH
T ss_pred eCCCCcHHHHHHHHHHHh
Confidence 3355 5666666666654
No 331
>3to5_A CHEY homolog; alpha(5)beta(5), chemotaxis, FLIM, phosphorylation, motor AC signaling protein; 1.65A {Vibrio cholerae}
Probab=31.22 E-value=87 Score=18.76 Aligned_cols=71 Identities=11% Similarity=0.093 Sum_probs=40.3
Q ss_pred hhcCCeEEEEeCCCChHHHHHHHHHHhcC---CCceEEEEeccccc----cccCcCccCEEEEeCCCCCccchhHHHHHH
Q psy2046 60 DIRGWRHLRLDGATQVSSRQELIDEYNRD---QDLFAFLLSTKAGG----LGINLTAADTVIIHDVDFNPYNDKQAEDRC 132 (138)
Q Consensus 60 ~~~g~~~~~i~g~~~~~~R~~~~~~F~~~---~~~~vll~~~~~~~----~Gl~l~~~~~vi~~~~~~~~~~~~Q~~gR~ 132 (138)
+...+..+.++=.||.-.-.+.++..+.. +...+++++..... .++.. +++. ++.-|+++.....++.++
T Consensus 54 ~~~~~DlillD~~MP~mdG~el~~~ir~~~~~~~ipvI~lTa~~~~~~~~~~~~~-Ga~~--yl~KP~~~~~L~~~i~~~ 130 (134)
T 3to5_A 54 KKGDFDFVVTDWNMPGMQGIDLLKNIRADEELKHLPVLMITAEAKREQIIEAAQA-GVNG--YIVKPFTAATLKEKLDKI 130 (134)
T ss_dssp HHHCCSEEEEESCCSSSCHHHHHHHHHHSTTTTTCCEEEEESSCCHHHHHHHHHT-TCCE--EEESSCCHHHHHHHHHHH
T ss_pred HhCCCCEEEEcCCCCCCCHHHHHHHHHhCCCCCCCeEEEEECCCCHHHHHHHHHC-CCCE--EEECCCCHHHHHHHHHHH
Confidence 34456677777777776666677776632 23345665543321 23332 2222 234578888888877776
Q ss_pred h
Q psy2046 133 H 133 (138)
Q Consensus 133 ~ 133 (138)
.
T Consensus 131 l 131 (134)
T 3to5_A 131 F 131 (134)
T ss_dssp C
T ss_pred H
Confidence 4
No 332
>1s8n_A Putative antiterminator; RV1626, structural genomics, transcriptional antiterminator, component system, PSI; 1.48A {Mycobacterium tuberculosis} SCOP: c.23.1.1 PDB: 1sd5_A
Probab=31.17 E-value=98 Score=19.34 Aligned_cols=89 Identities=8% Similarity=-0.057 Sum_probs=44.6
Q ss_pred CCCeEE-EEeccHHHHHHHHHHHhhcCCeEEEEeCCCChHHHHHHHHHHhcCCCceEEEEecccc----ccccCcCccCE
Q psy2046 38 NGHRVL-IFSQFIFVLDILGHYMDIRGWRHLRLDGATQVSSRQELIDEYNRDQDLFAFLLSTKAG----GLGINLTAADT 112 (138)
Q Consensus 38 ~~~k~i-if~~~~~~~~~l~~~l~~~g~~~~~i~g~~~~~~R~~~~~~F~~~~~~~vll~~~~~~----~~Gl~l~~~~~ 112 (138)
.|-.++ .+.+....+.. +.......+.++-.++...-.+.++..+......+++++.... ..++... +..
T Consensus 36 ~g~~v~~~~~~~~~al~~----~~~~~~dlvi~D~~~p~~~g~~~~~~l~~~~~~pii~lt~~~~~~~~~~~~~~g-a~~ 110 (205)
T 1s8n_A 36 EGYEIVGEAGDGQEAVEL----AELHKPDLVIMDVKMPRRDGIDAASEIASKRIAPIVVLTAFSQRDLVERARDAG-AMA 110 (205)
T ss_dssp TTCEEEEEESSHHHHHHH----HHHHCCSEEEEESSCSSSCHHHHHHHHHHTTCSCEEEEEEGGGHHHHHTTGGGS-CEE
T ss_pred CCCEEEEEeCCHHHHHHH----HhhcCCCEEEEeCCCCCCChHHHHHHHHhcCCCCEEEEecCCCHHHHHHHHhcC-CcE
Confidence 455665 44443333333 3334566777776665544455565555332224455543221 1333322 222
Q ss_pred EEEeCCCCCccchhHHHHHHh
Q psy2046 113 VIIHDVDFNPYNDKQAEDRCH 133 (138)
Q Consensus 113 vi~~~~~~~~~~~~Q~~gR~~ 133 (138)
++.-|+++....+++.++.
T Consensus 111 --~l~KP~~~~~L~~~i~~~~ 129 (205)
T 1s8n_A 111 --YLVKPFSISDLIPAIELAV 129 (205)
T ss_dssp --EEEESCCHHHHHHHHHHHH
T ss_pred --EEeCCCCHHHHHHHHHHHH
Confidence 2334788888877777654
No 333
>3heb_A Response regulator receiver domain protein (CHEY); NYSGXRC, PSI-II, respose regulator, structure initiative, structural genomics; 2.40A {Rhodospirillum rubrum} SCOP: c.23.1.0
Probab=31.15 E-value=82 Score=18.44 Aligned_cols=92 Identities=13% Similarity=0.001 Sum_probs=48.8
Q ss_pred eEEEEeccHHHHHHHHHHH-----hhcCCeEEEEeCCCChHHHHHHHHHHhc---CCCceEEEEeccccc----cccCcC
Q psy2046 41 RVLIFSQFIFVLDILGHYM-----DIRGWRHLRLDGATQVSSRQELIDEYNR---DQDLFAFLLSTKAGG----LGINLT 108 (138)
Q Consensus 41 k~iif~~~~~~~~~l~~~l-----~~~g~~~~~i~g~~~~~~R~~~~~~F~~---~~~~~vll~~~~~~~----~Gl~l~ 108 (138)
.+..+.+..+.++.+...- .......+.++-.++...-.+.++..+. .+...+++++..... ..+..
T Consensus 32 ~v~~~~~~~~al~~l~~~~~~~~~~~~~~dliilD~~l~~~~g~~~~~~lr~~~~~~~~pii~~t~~~~~~~~~~~~~~- 110 (152)
T 3heb_A 32 EIIAFTDGTSALNYLFGDDKSGRVSAGRAQLVLLDLNLPDMTGIDILKLVKENPHTRRSPVVILTTTDDQREIQRCYDL- 110 (152)
T ss_dssp CEEEESSHHHHHHHHHCTTSSSGGGTTCBEEEEECSBCSSSBHHHHHHHHHHSTTTTTSCEEEEESCCCHHHHHHHHHT-
T ss_pred eEEEeCCHHHHHHHHhccccccccccCCCCEEEEeCCCCCCcHHHHHHHHHhcccccCCCEEEEecCCCHHHHHHHHHC-
Confidence 5666655544444443111 2334566777766665556666666664 234445555543321 12222
Q ss_pred ccCEEEEeCCCCCccchhHHHHHHhhc
Q psy2046 109 AADTVIIHDVDFNPYNDKQAEDRCHRV 135 (138)
Q Consensus 109 ~~~~vi~~~~~~~~~~~~Q~~gR~~R~ 135 (138)
+++. ++.-|+++..+.+++.++.+.
T Consensus 111 g~~~--~l~KP~~~~~l~~~i~~~~~~ 135 (152)
T 3heb_A 111 GANV--YITKPVNYENFANAIRQLGLF 135 (152)
T ss_dssp TCSE--EEECCSSHHHHHHHHHHHHHH
T ss_pred CCcE--EEeCCCCHHHHHHHHHHHHHH
Confidence 2333 334578888888888887654
No 334
>3l49_A ABC sugar (ribose) transporter, periplasmic substrate-binding subunit; sugar binding/transporter, structural genomics, PSI; HET: UNL; 2.30A {Rhodobacter sphaeroides}
Probab=31.08 E-value=1.2e+02 Score=20.11 Aligned_cols=59 Identities=5% Similarity=-0.054 Sum_probs=27.5
Q ss_pred hhCCCeEEEEeccHH---HHHHHHHHHhhcCCeEEEEeCCCChHHHHHHHHHHhcCCCceEEEEe
Q psy2046 36 KKNGHRVLIFSQFIF---VLDILGHYMDIRGWRHLRLDGATQVSSRQELIDEYNRDQDLFAFLLS 97 (138)
Q Consensus 36 ~~~~~k~iif~~~~~---~~~~l~~~l~~~g~~~~~i~g~~~~~~R~~~~~~F~~~~~~~vll~~ 97 (138)
.+.|-.++++..... ....+.. +...++....+.+..+ ..-...++.......+ ++++.
T Consensus 32 ~~~g~~~~~~~~~~~~~~~~~~~~~-l~~~~vdgiIi~~~~~-~~~~~~~~~~~~~~iP-vV~~~ 93 (291)
T 3l49_A 32 ERLGGTAIALDAGRNDQTQVSQIQT-LIAQKPDAIIEQLGNL-DVLNPWLQKINDAGIP-LFTVD 93 (291)
T ss_dssp HHTTCEEEEEECTTCHHHHHHHHHH-HHHHCCSEEEEESSCH-HHHHHHHHHHHHTTCC-EEEES
T ss_pred HHcCCEEEEEcCCCCHHHHHHHHHH-HHHcCCCEEEEeCCCh-hhhHHHHHHHHHCCCc-EEEec
Confidence 445666666643221 1223333 3345666666655432 2334455655544344 34433
No 335
>1byk_A Protein (trehalose operon repressor); LACI family, phosphate binding, protein structure, trehalose repressor, gene regulation; HET: T6P; 2.50A {Escherichia coli} SCOP: c.93.1.1
Probab=30.86 E-value=1.1e+02 Score=19.80 Aligned_cols=18 Identities=6% Similarity=0.167 Sum_probs=7.6
Q ss_pred HHHHHHHhhcCCeEEEEe
Q psy2046 53 DILGHYMDIRGWRHLRLD 70 (138)
Q Consensus 53 ~~l~~~l~~~g~~~~~i~ 70 (138)
..+++.+.+.|+......
T Consensus 22 ~gi~~~~~~~g~~~~~~~ 39 (255)
T 1byk_A 22 QTMLPAFYEQGYDPIMME 39 (255)
T ss_dssp HHHHHHHHHHTCEEEEEE
T ss_pred HHHHHHHHHcCCEEEEEe
Confidence 334444444444444333
No 336
>2dko_A Caspase-3; low barrier hydrogen bond, caspase, drug design, radiation D tetrahedral intermediate, protease; 1.06A {Homo sapiens} PDB: 1nme_A 2h5i_A 2h5j_A 2h65_A 2xyg_A* 2xyh_A 2xyp_A* 2xzd_A 2xzt_A 2y0b_A 3edq_A 1gfw_A 1re1_A* 1pau_A* 1rhk_A* 1rhm_A* 1rhq_A* 1rhr_A* 1rhu_A* 1rhj_A* ...
Probab=30.78 E-value=97 Score=19.13 Aligned_cols=38 Identities=11% Similarity=0.049 Sum_probs=30.5
Q ss_pred HHHHHHHHHHhhcCCeEEEEeCCCChHHHHHHHHHHhcC
Q psy2046 50 FVLDILGHYMDIRGWRHLRLDGATQVSSRQELIDEYNRD 88 (138)
Q Consensus 50 ~~~~~l~~~l~~~g~~~~~i~g~~~~~~R~~~~~~F~~~ 88 (138)
.+.+.|...|+..|+.+ .++...+..+-.+.+++|...
T Consensus 41 ~D~~~L~~~f~~LgF~V-~~~~dlt~~em~~~l~~~~~~ 78 (146)
T 2dko_A 41 VDAANLRETFRNLKYEV-RNKNDLTREEIVELMRDVSKE 78 (146)
T ss_dssp HHHHHHHHHHHHTTCEE-EEEESCCHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHCCCEE-EEeeCCCHHHHHHHHHHHHHh
Confidence 46789999999999995 455567888888899999743
No 337
>2ouc_A Dual specificity protein phosphatase 10; rhodanese fold, hydrolase; 2.20A {Homo sapiens}
Probab=30.67 E-value=22 Score=21.10 Aligned_cols=35 Identities=17% Similarity=0.281 Sum_probs=25.8
Q ss_pred CCeEEEEeccHHH---------HHHHHHHHhhcCCeEEEEeCCC
Q psy2046 39 GHRVLIFSQFIFV---------LDILGHYMDIRGWRHLRLDGAT 73 (138)
Q Consensus 39 ~~k~iif~~~~~~---------~~~l~~~l~~~g~~~~~i~g~~ 73 (138)
+..+|+||..... ...+...|...|+++..+.|+.
T Consensus 83 ~~~ivvyc~~g~~~~~~~~~~~~~~~~~~L~~~G~~v~~l~GG~ 126 (142)
T 2ouc_A 83 SKEIIVYDENTNEPSRVMPSQPLHIVLESLKREGKEPLVLKGGL 126 (142)
T ss_dssp HSCEEEECSSCCCGGGCCTTSHHHHHHHHHHHTTCCCEEETTHH
T ss_pred CCcEEEEECCCCchhhcCcccHHHHHHHHHHHcCCcEEEEccCH
Confidence 4579999987543 3456777888888888888865
No 338
>4aaj_A N-(5'-phosphoribosyl)anthranilate isomerase; alpha/beta-barrel, hyperthermophilic, phosphoribo isomerase; 1.75A {Pyrococcus furiosus}
Probab=30.63 E-value=1.2e+02 Score=20.25 Aligned_cols=32 Identities=9% Similarity=0.095 Sum_probs=22.2
Q ss_pred HHHHHHHhhcCCeEEEEeCCCChHHHHHHHHH
Q psy2046 53 DILGHYMDIRGWRHLRLDGATQVSSRQELIDE 84 (138)
Q Consensus 53 ~~l~~~l~~~g~~~~~i~g~~~~~~R~~~~~~ 84 (138)
+.+...+...++.++.+||..+++.-..+-+.
T Consensus 82 ~ei~~~i~~~~ld~vQLHG~E~~~~~~~l~~~ 113 (228)
T 4aaj_A 82 SEWAMAIERTGAQYIQVHSNALPQTIDTLKKE 113 (228)
T ss_dssp HHHHHHHHHHTCSEEEECSCCCHHHHHHHHHH
T ss_pred HHHHHHHHhccchheecccccCHHHHHHHhhc
Confidence 34556667778999999999887654444333
No 339
>3lfu_A DNA helicase II; SF1 helicase, ATP-binding, DNA damage, DNA REP replication, DNA-binding, hydrolase, nucleotide-B SOS response; HET: DNA; 1.80A {Escherichia coli} PDB: 2is6_A* 2is2_A* 2is1_A* 2is4_A*
Probab=30.56 E-value=84 Score=24.01 Aligned_cols=53 Identities=11% Similarity=0.030 Sum_probs=36.1
Q ss_pred HHHHHHHHHHhhhCC---CeEEEEeccHHHHHHHHHHHhhcCCeEEEEeCCCChHHH
Q psy2046 25 LKKLDEILPDLKKNG---HRVLIFSQFIFVLDILGHYMDIRGWRHLRLDGATQVSSR 78 (138)
Q Consensus 25 ~~~l~~ll~~~~~~~---~k~iif~~~~~~~~~l~~~l~~~g~~~~~i~g~~~~~~R 78 (138)
...+.+.|..+.+.| ..+.|.+.+......++..|.+.|+++... |+.+.-++
T Consensus 330 ~~~ia~~I~~l~~~g~~~~diaVL~r~~~~~~~l~~~l~~~~Ip~~~~-~~~~~~~~ 385 (647)
T 3lfu_A 330 ARFVVNRIKTWQDNGGALAECAILYRSNAQSRVLEEALLQASMPYRIY-GGMRFFER 385 (647)
T ss_dssp HHHHHHHHHHHHHTTCCGGGEEEEESSGGGHHHHHHHHHHTTCCEEES-SSCCGGGS
T ss_pred HHHHHHHHHHHHHcCCCccCEEEEEeCchhHHHHHHHHHHCCCCEEEe-CCCCcccc
Confidence 344555555555544 467777777888899999999999998654 54444433
No 340
>3qhq_A CSN2, SAG0897 family crispr-associated protein; helicase, transferase; 2.00A {Streptococcus agalactiae} PDB: 3toc_A 3v7f_A
Probab=30.32 E-value=1.1e+02 Score=20.50 Aligned_cols=48 Identities=17% Similarity=0.109 Sum_probs=34.1
Q ss_pred chHHHHHHHHHHhhhCCCeEEEEeccH-----HHHHHHHHHHhhcCCeEEEEeCC
Q psy2046 23 GKLKKLDEILPDLKKNGHRVLIFSQFI-----FVLDILGHYMDIRGWRHLRLDGA 72 (138)
Q Consensus 23 ~K~~~l~~ll~~~~~~~~k~iif~~~~-----~~~~~l~~~l~~~g~~~~~i~g~ 72 (138)
.|+....++..++ ...|++||++-. +.+..+.+.....+++...+-.+
T Consensus 147 eki~~~lki~~el--~~kkllvfvNl~~YLt~eEl~~L~e~i~~~~i~vLlIE~~ 199 (229)
T 3qhq_A 147 EKCFEIIQVYHYL--TKKNLLVFVNSGAYLTKDEVIKLCEYINLMQKSVLFLEPR 199 (229)
T ss_dssp HHHHHHHHHHHHC--TTCCEEEEESCGGGCCHHHHHHHHHHHHHHCSCEEEEESS
T ss_pred HHHHHHHHHHHHh--cCCCEEEEEChHHhCCHHHHHHHHHHHHHhCCeEEEEecc
Confidence 4555555555443 356899999876 55778888888888888888776
No 341
>1nkt_A Preprotein translocase SECA 1 subunit; preprotein translocation, ATPase, transmembrane transport, helicase-like motor domain; HET: ADP; 2.60A {Mycobacterium tuberculosis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1nl3_A
Probab=30.24 E-value=2.3e+02 Score=23.42 Aligned_cols=43 Identities=14% Similarity=0.112 Sum_probs=31.9
Q ss_pred CCCeEEEEeccHHHHHHHHHHH----hhcCCeEEEEeCCCChHHHHH
Q psy2046 38 NGHRVLIFSQFIFVLDILGHYM----DIRGWRHLRLDGATQVSSRQE 80 (138)
Q Consensus 38 ~~~k~iif~~~~~~~~~l~~~l----~~~g~~~~~i~g~~~~~~R~~ 80 (138)
.+..++|.+++..-+...++++ +..|+++..+.|+++..+|..
T Consensus 151 ~g~~v~VvTpTreLA~Qdae~m~~l~~~lGLsv~~i~gg~~~~~r~~ 197 (922)
T 1nkt_A 151 AGNGVHIVTVNDYLAKRDSEWMGRVHRFLGLQVGVILATMTPDERRV 197 (922)
T ss_dssp TTSCEEEEESSHHHHHHHHHHHHHHHHHTTCCEEECCTTCCHHHHHH
T ss_pred hCCCeEEEeCCHHHHHHHHHHHHHHHhhcCCeEEEEeCCCCHHHHHH
Confidence 4678999999987665544444 446999999999998765543
No 342
>3ipl_A 2-succinylbenzoate--COA ligase; structural genomics, acyl-protein synthetase, PSI-2, protein structure initiative; 2.30A {Staphylococcus aureus subsp}
Probab=30.10 E-value=1.6e+02 Score=21.51 Aligned_cols=70 Identities=11% Similarity=0.023 Sum_probs=44.5
Q ss_pred hHHHHHHHHHHhhhCCCeEEEEeccHHHHHHHHHHHhhcCCeEEEEeCCCChHHHHHHHHHHhcCCCceEEEEecc
Q psy2046 24 KLKKLDEILPDLKKNGHRVLIFSQFIFVLDILGHYMDIRGWRHLRLDGATQVSSRQELIDEYNRDQDLFAFLLSTK 99 (138)
Q Consensus 24 K~~~l~~ll~~~~~~~~k~iif~~~~~~~~~l~~~l~~~g~~~~~i~g~~~~~~R~~~~~~F~~~~~~~vll~~~~ 99 (138)
+...+...|... .++++.|+....-..-...-.+-+.|..++.++-..+.++...+++.- ..++++.+..
T Consensus 35 ~~~~lA~~L~~~--~gd~V~i~~~n~~e~~~~~lA~~~~Gav~vpl~~~~~~~~l~~~l~~~----~~~~li~~~~ 104 (501)
T 3ipl_A 35 EASLLAKRLKAY--QQSRVGLYIDNSIQSIILIHACWLANIEIAMINTRLTPNEMTNQMRSI----DVQLIFCTLP 104 (501)
T ss_dssp HHHHHHHHHHTT--CCSEEEEECCSSHHHHHHHHHHHHTTCEEEECCTTSCHHHHHHHHHHT----TCCEEEESSC
T ss_pred HHHHHHHHHHHc--CCCEEEEEcCCCHHHHHHHHHHHHcCCEEEecCccCCHHHHHHHHHhc----CCCEEEEccc
Confidence 344455555443 688999988765433333333345688999999999988887777765 2334555443
No 343
>3mwd_B ATP-citrate synthase; ATP-grAsp, phosphohistidine, organic acid, lyase, transferas; HET: CIT; 2.10A {Homo sapiens} PDB: 3mwe_B*
Probab=29.69 E-value=1.2e+02 Score=21.57 Aligned_cols=47 Identities=13% Similarity=0.156 Sum_probs=34.4
Q ss_pred CeEEEEeccHHHHHHHHHHHhhcCCeEEEE-eCCCChHHHHHHHHHHh
Q psy2046 40 HRVLIFSQFIFVLDILGHYMDIRGWRHLRL-DGATQVSSRQELIDEYN 86 (138)
Q Consensus 40 ~k~iif~~~~~~~~~l~~~l~~~g~~~~~i-~g~~~~~~R~~~~~~F~ 86 (138)
+=.|||++-....+.+.+.+.+.|++.+.+ +.+.+..+..++.+.-+
T Consensus 81 DlaVi~vp~~~a~~ai~ea~~~~Gv~~vViiT~G~~e~~~~~l~~~a~ 128 (334)
T 3mwd_B 81 DVLINFASLRSAYDSTMETMNYAQIRTIAIIAEGIPEALTRKLIKKAD 128 (334)
T ss_dssp CEEEECCCTTTHHHHHHHHTTSTTCCEEEECCSCCCHHHHHHHHHHHH
T ss_pred cEEEEecCHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHH
Confidence 578899988887888888998889975554 88888755545444433
No 344
>3h5o_A Transcriptional regulator GNTR; transcription regulator, GNTR,chromobacterium violaceum, PSI, SGX, DNA-binding; 2.30A {Chromobacterium violaceum}
Probab=29.41 E-value=1.4e+02 Score=20.48 Aligned_cols=50 Identities=12% Similarity=0.153 Sum_probs=35.4
Q ss_pred HHHHHHHHHHHhhcCCeEEEEeCCCChHHHHHHHHHHhcCCCceEEEEec
Q psy2046 49 IFVLDILGHYMDIRGWRHLRLDGATQVSSRQELIDEYNRDQDLFAFLLST 98 (138)
Q Consensus 49 ~~~~~~l~~~l~~~g~~~~~i~g~~~~~~R~~~~~~F~~~~~~~vll~~~ 98 (138)
...+.-+++.+.+.|+.........+...-.+.++.+......-+++..+
T Consensus 78 ~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdGiIi~~~ 127 (339)
T 3h5o_A 78 LETLTGIETVLDAAGYQMLIGNSHYDAGQELQLLRAYLQHRPDGVLITGL 127 (339)
T ss_dssp HHHHHHHHHHHHHTTCEEEEEECTTCHHHHHHHHHHHHTTCCSEEEEECS
T ss_pred HHHHHHHHHHHHHCCCEEEEEeCCCChHHHHHHHHHHHcCCCCEEEEeCC
Confidence 35677888888889999888777777666667788877554444455443
No 345
>1q7s_A BIT1, protein CGI-147; apoptosis; 2.00A {Homo sapiens} SCOP: c.131.1.1
Probab=29.37 E-value=92 Score=18.44 Aligned_cols=38 Identities=16% Similarity=0.022 Sum_probs=27.5
Q ss_pred HHHhhhCC-CeEEEEeccHHHHHHHHHHHhhcCCeEEEE
Q psy2046 32 LPDLKKNG-HRVLIFSQFIFVLDILGHYMDIRGWRHLRL 69 (138)
Q Consensus 32 l~~~~~~~-~k~iif~~~~~~~~~l~~~l~~~g~~~~~i 69 (138)
+..+...| .|+++=++..+.+..|.+..+..|+++..+
T Consensus 43 ~~~W~~~g~~KVvlk~~~e~~l~~l~~~a~~~gl~~~~i 81 (117)
T 1q7s_A 43 LKQWEYCGQPKVVVKAPDEETLIALLAHAKMLGLTVSLI 81 (117)
T ss_dssp HHHHHHTTCCEEEEEESSHHHHHHHHHHHHHTTCCEEEE
T ss_pred HHHHHhCCCeeEEEEcCCHHHHHHHHHHHHHCCCCEEEE
Confidence 34444455 477888888888888988888889886443
No 346
>3miz_A Putative transcriptional regulator protein, LACI family; LACL family, protein structure initiative II (PSI II), NYSGXRC, structural genomics; 1.91A {Rhizobium etli}
Probab=29.34 E-value=1.3e+02 Score=20.10 Aligned_cols=49 Identities=6% Similarity=0.036 Sum_probs=34.1
Q ss_pred HHHHHHHHHHhhcCCeEEEEeCCCChHHHHHHHHHHhcCCCceEEEEec
Q psy2046 50 FVLDILGHYMDIRGWRHLRLDGATQVSSRQELIDEYNRDQDLFAFLLST 98 (138)
Q Consensus 50 ~~~~~l~~~l~~~g~~~~~i~g~~~~~~R~~~~~~F~~~~~~~vll~~~ 98 (138)
....-+++.+.+.|+.........+...-.+.++.+......-+++...
T Consensus 31 ~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdGiIi~~~ 79 (301)
T 3miz_A 31 DIVRGIQDWANANGKTILIANTGGSSEREVEIWKMFQSHRIDGVLYVTM 79 (301)
T ss_dssp HHHHHHHHHHHHTTCEEEEEECTTCHHHHHHHHHHHHHTTCSEEEEEEE
T ss_pred HHHHHHHHHHHHCCCEEEEEeCCCChHHHHHHHHHHHhCCCCEEEEecC
Confidence 5677788888888998888777766666667777776554444455443
No 347
>2l5g_B Putative uncharacterized protein NCOR2, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=29.24 E-value=38 Score=16.34 Aligned_cols=14 Identities=29% Similarity=0.176 Sum_probs=11.1
Q ss_pred CccchhHHHHHHhh
Q psy2046 121 NPYNDKQAEDRCHR 134 (138)
Q Consensus 121 ~~~~~~Q~~gR~~R 134 (138)
+...+.|.++|+.|
T Consensus 3 tk~~l~qkI~kVdr 16 (42)
T 2l5g_B 3 SKEELIQNMDRVDR 16 (42)
T ss_dssp SSSHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHH
Confidence 45678899999977
No 348
>3lfu_A DNA helicase II; SF1 helicase, ATP-binding, DNA damage, DNA REP replication, DNA-binding, hydrolase, nucleotide-B SOS response; HET: DNA; 1.80A {Escherichia coli} PDB: 2is6_A* 2is2_A* 2is1_A* 2is4_A*
Probab=29.21 E-value=90 Score=23.85 Aligned_cols=41 Identities=15% Similarity=0.032 Sum_probs=32.3
Q ss_pred cCchHHHHHHHHHHhhhCC----CeEEEEeccHHHHHHHHHHHhh
Q psy2046 21 ESGKLKKLDEILPDLKKNG----HRVLIFSQFIFVLDILGHYMDI 61 (138)
Q Consensus 21 ~s~K~~~l~~ll~~~~~~~----~k~iif~~~~~~~~~l~~~l~~ 61 (138)
-++|...+...+..+...+ +++++.+.+....+.+.+.|..
T Consensus 32 GsGKT~~l~~ri~~l~~~~~~~~~~iL~ltft~~aa~e~~~rl~~ 76 (647)
T 3lfu_A 32 GSGKTRVLVHRIAWLMSVENCSPYSIMAVTFTNKAAAEMRHRIGQ 76 (647)
T ss_dssp TSCHHHHHHHHHHHHHHTSCCCGGGEEEEESSHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHhCCCChhhEEEEeccHHHHHHHHHHHHH
Confidence 3689999888887766542 6899999888888888887765
No 349
>1zl0_A Hypothetical protein PA5198; structural genomics, PSI, PROT structure initiative, midwest center for structural genomic unknown function; HET: TLA PEG; 1.10A {Pseudomonas aeruginosa} SCOP: c.8.10.1 c.23.16.7 PDB: 1zrs_A 2aum_A 2aun_A
Probab=29.21 E-value=1.5e+02 Score=20.85 Aligned_cols=68 Identities=21% Similarity=0.121 Sum_probs=38.6
Q ss_pred hCCCeEEEEeccH----HHHHHHHHHHhhcCCeEEEE------eC--CCChHHHHHHHHHHhcCCCceEEEEeccccccc
Q psy2046 37 KNGHRVLIFSQFI----FVLDILGHYMDIRGWRHLRL------DG--ATQVSSRQELIDEYNRDQDLFAFLLSTKAGGLG 104 (138)
Q Consensus 37 ~~~~k~iif~~~~----~~~~~l~~~l~~~g~~~~~i------~g--~~~~~~R~~~~~~F~~~~~~~vll~~~~~~~~G 104 (138)
+.|+++-|.+++. ..++...+.|+..|+.+..- ++ +-+.++|.+-+.++-.++.++.++. ..+|.|
T Consensus 15 ~~Gd~I~ivaPSs~~~~~~~~~~~~~L~~~G~~v~~~~~~~~~~~~~agtd~~Ra~dL~~a~~Dp~i~aI~~--~rGGyg 92 (311)
T 1zl0_A 15 PIDGRVALIAPASAIATDVLEATLRQLEVHGVDYHLGRHVEARYRYLAGTVEQRLEDLHNAFDMPDITAVWC--LRGGYG 92 (311)
T ss_dssp CCCSEEEEECCSBCCCHHHHHHHHHHHHHTTCCEEECTTTTCCBTTBSSCHHHHHHHHHHHHHSTTEEEEEE--SCCSSC
T ss_pred CCcCEEEEEeCCCCCCHHHHHHHHHHHHhCCCEEEECccccccccccCCCHHHHHHHHHHHHhCCCCCEEEE--ccCCcC
Confidence 3466776666643 33566667777778776531 11 2355666665555545566665553 355666
Q ss_pred cC
Q psy2046 105 IN 106 (138)
Q Consensus 105 l~ 106 (138)
.+
T Consensus 93 a~ 94 (311)
T 1zl0_A 93 CG 94 (311)
T ss_dssp GG
T ss_pred HH
Confidence 54
No 350
>3hcw_A Maltose operon transcriptional repressor; RNA-binding, PSI-2, NYSGXRC, STRU genomics, protein structure initiative; 2.20A {Staphylococcus aureus subsp}
Probab=29.18 E-value=1.2e+02 Score=20.29 Aligned_cols=38 Identities=11% Similarity=-0.018 Sum_probs=17.7
Q ss_pred hhCCCeEEEEeccHH--HHHHHHHHHhhcCCeEEEEeCCC
Q psy2046 36 KKNGHRVLIFSQFIF--VLDILGHYMDIRGWRHLRLDGAT 73 (138)
Q Consensus 36 ~~~~~k~iif~~~~~--~~~~l~~~l~~~g~~~~~i~g~~ 73 (138)
.+.|-.++++..... ....+.+.|...++.-+.+.+..
T Consensus 39 ~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdGiI~~~~~ 78 (295)
T 3hcw_A 39 NQHGYGTQTTVSNNMNDLMDEVYKMIKQRMVDAFILLYSK 78 (295)
T ss_dssp HTTTCEEEECCCCSHHHHHHHHHHHHHTTCCSEEEESCCC
T ss_pred HHCCCEEEEEcCCCChHHHHHHHHHHHhCCcCEEEEcCcc
Confidence 344556655543221 12233444445566666665443
No 351
>1y80_A Predicted cobalamin binding protein; corrinoid, factor IIIM, methyl transferase, structural genomics, PSI, protein structure initiative; HET: B1M; 1.70A {Moorella thermoacetica}
Probab=29.17 E-value=1.2e+02 Score=19.60 Aligned_cols=47 Identities=9% Similarity=0.113 Sum_probs=35.3
Q ss_pred CCeEEEEeccH----HHHHHHHHHHhhcCCeEEEEeCCCChHHHHHHHHHH
Q psy2046 39 GHRVLIFSQFI----FVLDILGHYMDIRGWRHLRLDGATQVSSRQELIDEY 85 (138)
Q Consensus 39 ~~k~iif~~~~----~~~~~l~~~l~~~g~~~~~i~g~~~~~~R~~~~~~F 85 (138)
..++++.+..- --...+...|+..|+.+..+-...+.++-.+.+.+.
T Consensus 88 ~~~vll~~~~gd~H~iG~~~va~~l~~~G~~v~~LG~~vp~~~l~~~~~~~ 138 (210)
T 1y80_A 88 VGKIVLGTVKGDLHDIGKNLVAMMLESGGFTVYNLGVDIEPGKFVEAVKKY 138 (210)
T ss_dssp CCEEEEEEBTTCCCCHHHHHHHHHHHHTTCEEEECCSSBCHHHHHHHHHHH
T ss_pred CCEEEEEeCCCcccHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHc
Confidence 34788887543 336789999999999987777777877777777766
No 352
>2qvg_A Two component response regulator; NYSGXRC, PSI-2, structural genomics, protein structure initiative; 1.50A {Legionella pneumophila subsp}
Probab=29.08 E-value=86 Score=18.00 Aligned_cols=71 Identities=13% Similarity=-0.029 Sum_probs=34.0
Q ss_pred CCeEEEEeCCCChHHHHHHHHHHhcC---CCceEEEEeccccc----cccCcCccCEEEEeCCCCCccchhHHHHHHhhc
Q psy2046 63 GWRHLRLDGATQVSSRQELIDEYNRD---QDLFAFLLSTKAGG----LGINLTAADTVIIHDVDFNPYNDKQAEDRCHRV 135 (138)
Q Consensus 63 g~~~~~i~g~~~~~~R~~~~~~F~~~---~~~~vll~~~~~~~----~Gl~l~~~~~vi~~~~~~~~~~~~Q~~gR~~R~ 135 (138)
....+.++-.++...-.+.++..+.. +...+++++..... ..+.. ++.. ++.-|.++....+++=...+.
T Consensus 59 ~~dlii~D~~l~~~~g~~~~~~l~~~~~~~~~~ii~ls~~~~~~~~~~~~~~-g~~~--~l~kP~~~~~L~~~~~~~~~~ 135 (143)
T 2qvg_A 59 HPKLILLDINIPKMNGIEFLKELRDDSSFTDIEVFVLTAAYTSKDKLAFESL-NIRG--HLIKPLDYGEAIKLFWILQSM 135 (143)
T ss_dssp CCSEEEEETTCTTSCHHHHHHHHTTSGGGTTCEEEEEESCCCHHHHHHHTTT-TCCE--EEESSCCHHHHHHHHHHHHHC
T ss_pred CCCEEEEecCCCCCCHHHHHHHHHcCccccCCcEEEEeCCCCHHHHHHHHhc-CCCe--EEECCCCHHHHHHHHHHHHHh
Confidence 45566666666554555666666643 34445555433211 11211 1222 234466776666655444444
Q ss_pred C
Q psy2046 136 G 136 (138)
Q Consensus 136 G 136 (138)
|
T Consensus 136 ~ 136 (143)
T 2qvg_A 136 E 136 (143)
T ss_dssp -
T ss_pred h
Confidence 3
No 353
>3ics_A Coenzyme A-disulfide reductase; pyridine nucleotide-disulfide oxidoreductase class I, rhodan coenzyme A, flavin adenine dinucleotide; HET: FAD COA ADP; 1.94A {Bacillus anthracis} PDB: 3icr_A* 3ict_A*
Probab=29.07 E-value=50 Score=25.06 Aligned_cols=37 Identities=14% Similarity=0.190 Sum_probs=30.4
Q ss_pred CCCeEEEEeccHHHHHHHHHHHhhcCCeEEEEeCCCC
Q psy2046 38 NGHRVLIFSQFIFVLDILGHYMDIRGWRHLRLDGATQ 74 (138)
Q Consensus 38 ~~~k~iif~~~~~~~~~l~~~l~~~g~~~~~i~g~~~ 74 (138)
.++++++||..-.........|+..|+++..+.|+..
T Consensus 540 ~~~~iv~~C~~g~rs~~a~~~l~~~G~~v~~l~GG~~ 576 (588)
T 3ics_A 540 VDKDIYITCQLGMRGYVAARMLMEKGYKVKNVDGGFK 576 (588)
T ss_dssp SSSCEEEECSSSHHHHHHHHHHHHTTCCEEEETTHHH
T ss_pred CCCeEEEECCCCcHHHHHHHHHHHcCCcEEEEcchHH
Confidence 4568999998887778888999999999777888754
No 354
>3hz7_A Uncharacterized protein; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.00A {Desulfitobacterium hafniense}
Probab=28.94 E-value=79 Score=17.56 Aligned_cols=41 Identities=17% Similarity=0.178 Sum_probs=31.9
Q ss_pred HHHHHHhhhCCCeEEEEeccHHHHHHHHHHHhhcCCeEEEE
Q psy2046 29 DEILPDLKKNGHRVLIFSQFIFVLDILGHYMDIRGWRHLRL 69 (138)
Q Consensus 29 ~~ll~~~~~~~~k~iif~~~~~~~~~l~~~l~~~g~~~~~i 69 (138)
.+.+..+.+.|+.+.|.++.......+..+++..|+.+...
T Consensus 19 kkal~~l~~~G~~L~V~~dd~~a~~dI~~~~~~~G~~v~~~ 59 (87)
T 3hz7_A 19 KKALAELGEAGGVVTVLVDNDISRQNLQKMAEGMGYQSEYL 59 (87)
T ss_dssp HHHHHTTGGGCCEEEEEESSHHHHHHHHHHHHHHTCEEEEE
T ss_pred HHHHHhccCCCCEEEEEECCccHHHHHHHHHHHCCCEEEEE
Confidence 34444432268899999999999999999999999987654
No 355
>3l6u_A ABC-type sugar transport system periplasmic compo; structural genomics, nysgrc, target 11006S, PSI-2, protein S initiative; 1.90A {Exiguobacterium sibiricum}
Probab=28.82 E-value=1.3e+02 Score=19.91 Aligned_cols=11 Identities=0% Similarity=-0.236 Sum_probs=5.2
Q ss_pred hcCCeEEEEeC
Q psy2046 61 IRGWRHLRLDG 71 (138)
Q Consensus 61 ~~g~~~~~i~g 71 (138)
..++....+.+
T Consensus 62 ~~~vdgiI~~~ 72 (293)
T 3l6u_A 62 HLKVDAIFITT 72 (293)
T ss_dssp HTTCSEEEEEC
T ss_pred HcCCCEEEEec
Confidence 34555444444
No 356
>3huu_A Transcription regulator like protein; PSI-II, NYSGXRC, LAC I, STR genomics, protein structure initiative; 1.95A {Staphylococcus haemolyticus}
Probab=28.69 E-value=1.2e+02 Score=20.35 Aligned_cols=17 Identities=12% Similarity=0.176 Sum_probs=7.4
Q ss_pred HHHHHHhhcCCeEEEEe
Q psy2046 54 ILGHYMDIRGWRHLRLD 70 (138)
Q Consensus 54 ~l~~~l~~~g~~~~~i~ 70 (138)
-+++.+.+.|+......
T Consensus 48 gi~~~a~~~g~~~~~~~ 64 (305)
T 3huu_A 48 GINQACNVRGYSTRMTV 64 (305)
T ss_dssp HHHHHHHHHTCEEEECC
T ss_pred HHHHHHHHCCCEEEEEe
Confidence 34444444454444333
No 357
>2nu8_A Succinyl-COA ligase [ADP-forming] subunit alpha; citric acid cycle, heterotetramer, ligase, ATP-grAsp fold, R fold; HET: COA; 2.15A {Escherichia coli} SCOP: c.2.1.8 c.23.4.1 PDB: 2nu9_A* 2nu7_A* 2nua_A* 2nu6_A* 2scu_A* 1jll_A* 1scu_A* 1jkj_A* 1cqj_A* 1cqi_A*
Probab=28.68 E-value=1.4e+02 Score=20.48 Aligned_cols=62 Identities=16% Similarity=0.102 Sum_probs=42.5
Q ss_pred eEEEEeccHHHHHHHHHHHhhcCCe--EEEEeCCCC--hHHHHHHHHHHhcCCCceEEEEeccccc
Q psy2046 41 RVLIFSQFIFVLDILGHYMDIRGWR--HLRLDGATQ--VSSRQELIDEYNRDQDLFAFLLSTKAGG 102 (138)
Q Consensus 41 k~iif~~~~~~~~~l~~~l~~~g~~--~~~i~g~~~--~~~R~~~~~~F~~~~~~~vll~~~~~~~ 102 (138)
++=+++++-.....+..++...|+. +..-.|+.. .-.=.+.++.|.+++..+++++....++
T Consensus 146 ~i~~vsqSG~l~~~~~~~~~~~g~G~s~~vs~G~~~~~~~~~~d~l~~l~~D~~t~~I~l~~E~~~ 211 (288)
T 2nu8_A 146 KVGIVSRSGTLTYEAVKQTTDYGFGQSTCVGIGGDPIPGSNFIDILEMFEKDPQTEAIVMIGEIGG 211 (288)
T ss_dssp EEEEEESCHHHHHHHHHHHHHTTCCEEEEEECCSSSSCSSCHHHHHHHHHTCTTCCEEEEEEESSS
T ss_pred CEEEEECcHHHHHHHHHHHHhcCCCEEEEEeeCCCcCCCCCHHHHHHHHhcCCCCCEEEEEEeeCC
Confidence 4667777777777788887776554 444455544 3456778888888888888777766543
No 358
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=28.61 E-value=82 Score=22.96 Aligned_cols=50 Identities=18% Similarity=0.209 Sum_probs=34.8
Q ss_pred cCchHHH-HHHHHHHhhhCCCeEEEEeccHHHHHHHHHHHhhcCCeEEEEeCC
Q psy2046 21 ESGKLKK-LDEILPDLKKNGHRVLIFSQFIFVLDILGHYMDIRGWRHLRLDGA 72 (138)
Q Consensus 21 ~s~K~~~-l~~ll~~~~~~~~k~iif~~~~~~~~~l~~~l~~~g~~~~~i~g~ 72 (138)
-|+|... +..++......+.++++.+++..-+..+.+.++ |+++....|.
T Consensus 12 GsGKT~~~l~~~l~~~~~~g~~~lvl~Pt~~La~Q~~~~~~--~~~v~~~~~~ 62 (431)
T 2v6i_A 12 GAGKTRRVLPQLVREAVKKRLRTVILAPTRVVASEMYEALR--GEPIRYMTPA 62 (431)
T ss_dssp TSCTTTTHHHHHHHHHHHTTCCEEEEESSHHHHHHHHHHTT--TSCEEEC---
T ss_pred CCCHHHHHHHHHHHHHHhCCCCEEEECcHHHHHHHHHHHhC--CCeEEEEecC
Confidence 4567554 456665666778899999999998888888886 5666555554
No 359
>3rot_A ABC sugar transporter, periplasmic sugar binding; nysgrc, PSI-biology, structural genomics; 1.91A {Legionella pneumophila subsp}
Probab=28.58 E-value=1.3e+02 Score=20.02 Aligned_cols=67 Identities=12% Similarity=-0.010 Sum_probs=40.3
Q ss_pred HHHHHHHHhhcCCeEEEEeCCCChHHHHHHHHH-HhcCCCceEEEEecccc---------ccccCcCc-cCEEEEeCC
Q psy2046 52 LDILGHYMDIRGWRHLRLDGATQVSSRQELIDE-YNRDQDLFAFLLSTKAG---------GLGINLTA-ADTVIIHDV 118 (138)
Q Consensus 52 ~~~l~~~l~~~g~~~~~i~g~~~~~~R~~~~~~-F~~~~~~~vll~~~~~~---------~~Gl~l~~-~~~vi~~~~ 118 (138)
.+-..+.|++.|+++..+.+....+.-.+.+++ +...+.+..+++..+.. ..|+.+|. -=.|+-+|.
T Consensus 149 ~~Gf~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai~~~~d~~A~g~~~al~~~g~~vP~~dv~vig~D~ 226 (297)
T 3rot_A 149 AYGIKTILQDKGIFFEELDVGTDPNQVQSRVKSYFKIHPETNIIFCLTSQALDPLGQMLLHPDRYDFNYQPQVYSFDK 226 (297)
T ss_dssp HHHHHHHHHHTTCEEEEEECCSCHHHHHHHHHHHHHHCTTCCEEEESSHHHHHHHHHHHHSHHHHTCCCCCEEEEECC
T ss_pred HHHHHHHHHhcCCeEEEeecCCChHHHHHHHHHHHHhCCCCCEEEEcCCcchHHHHHHHHhcCCccCCCceEEEEeCC
Confidence 455677788889998877776665555566665 44445555677655543 25665554 333444543
No 360
>3lcm_A SMU.1420, putative oxidoreductase; NADPH:quinone oxidoreductase, MDAB; HET: FAD NAP; 1.80A {Streptococcus mutans} PDB: 4f8y_A*
Probab=28.50 E-value=21 Score=23.04 Aligned_cols=31 Identities=26% Similarity=0.032 Sum_probs=22.5
Q ss_pred cCccCEEEEeCCCCC---ccchhHHHHHHhhcCC
Q psy2046 107 LTAADTVIIHDVDFN---PYNDKQAEDRCHRVGQ 137 (138)
Q Consensus 107 l~~~~~vi~~~~~~~---~~~~~Q~~gR~~R~GQ 137 (138)
+..|+.+|+..|-|+ |..+..-++|+.|.|-
T Consensus 71 l~~AD~iV~~~P~y~~~~pa~LK~~iD~v~~~g~ 104 (196)
T 3lcm_A 71 VTWADHLIFIFPIWWSGMPAILKGFIDRVFVADF 104 (196)
T ss_dssp HHHCSEEEEEEECBTTBCCHHHHHHHHHHSCBTT
T ss_pred HHhCCEEEEECchhhccccHHHHHHHHHHccCCc
Confidence 446888888877776 4566778888877663
No 361
>3r6w_A FMN-dependent NADH-azoreductase 1; nitrofurazone, P. aeruginosa, nitroreductase, flavodoxin, oxidoreductase; HET: FMN NFZ; 2.08A {Pseudomonas aeruginosa} PDB: 3lt5_A* 2v9c_A* 3keg_A*
Probab=28.44 E-value=21 Score=23.24 Aligned_cols=31 Identities=29% Similarity=0.349 Sum_probs=22.4
Q ss_pred cCccCEEEEeCCCCC---ccchhHHHHHHhhcCC
Q psy2046 107 LTAADTVIIHDVDFN---PYNDKQAEDRCHRVGQ 137 (138)
Q Consensus 107 l~~~~~vi~~~~~~~---~~~~~Q~~gR~~R~GQ 137 (138)
+..|+.+|+..|-|| |..+..-+.|+.|.|.
T Consensus 85 l~~AD~iV~~~P~y~~~~pa~lK~~iD~~~~~g~ 118 (212)
T 3r6w_A 85 LFDSDLLVISTPMYNFSVPSGLKAWIDQIVRLGV 118 (212)
T ss_dssp HHHCSEEEEEEECBTTBCCHHHHHHHHHHCCBTT
T ss_pred HHhCCEEEEEcCcccccCCHHHHHHHHHHhhCCc
Confidence 456888888888776 4466678888877663
No 362
>3e61_A Putative transcriptional repressor of ribose OPER; structural genomics, DNA-binding, transcripti regulation, PSI-2; 2.00A {Staphylococcus saprophyticus subsp}
Probab=28.41 E-value=1.3e+02 Score=19.75 Aligned_cols=35 Identities=11% Similarity=-0.162 Sum_probs=15.7
Q ss_pred hCCCeEEEEeccHH--HHHHHHHHHhhcCCeEEEEeC
Q psy2046 37 KNGHRVLIFSQFIF--VLDILGHYMDIRGWRHLRLDG 71 (138)
Q Consensus 37 ~~~~k~iif~~~~~--~~~~l~~~l~~~g~~~~~i~g 71 (138)
+.|-.++++..... ....+.+.+...++..+.+.+
T Consensus 36 ~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~dgiIi~~ 72 (277)
T 3e61_A 36 AHGYQVLIGNSDNDIKKAQGYLATFVSHNCTGMISTA 72 (277)
T ss_dssp HTTCCEEEEECTTCHHHHHHHHHHHHHTTCSEEEECG
T ss_pred HCCCEEEEEeCCCCHHHHHHHHHHHHhCCCCEEEEec
Confidence 44555555543321 122233334445566555555
No 363
>3utn_X Thiosulfate sulfurtransferase TUM1; rhodanese-like domain; 1.90A {Saccharomyces cerevisiae}
Probab=28.34 E-value=82 Score=22.33 Aligned_cols=36 Identities=11% Similarity=-0.000 Sum_probs=28.0
Q ss_pred CCeEEEEeccHHHHHHHHHHHhhcCCe-EEEEeCCCC
Q psy2046 39 GHRVLIFSQFIFVLDILGHYMDIRGWR-HLRLDGATQ 74 (138)
Q Consensus 39 ~~k~iif~~~~~~~~~l~~~l~~~g~~-~~~i~g~~~ 74 (138)
++.+|+||.+-...-.+.-.|+..|++ +..|+|+-+
T Consensus 275 ~k~vI~yCgsGvtA~~~~laL~~lG~~~v~lYdGSWs 311 (327)
T 3utn_X 275 SKPTICSCGTGVSGVIIKTALELAGVPNVRLYDGSWT 311 (327)
T ss_dssp TSCEEEECSSSHHHHHHHHHHHHTTCCSEEEESSHHH
T ss_pred CCCEEEECChHHHHHHHHHHHHHcCCCCceeCCCcHH
Confidence 467999999877777777778888985 778888654
No 364
>3s5u_A Putative uncharacterized protein; crispr, crispr adaptation mechanism, NEW spacer aquisition, binding, DNA binding protein; 2.70A {Enterococcus faecalis}
Probab=28.30 E-value=1.2e+02 Score=20.20 Aligned_cols=49 Identities=16% Similarity=0.233 Sum_probs=33.8
Q ss_pred chHHHHHHHHHHhhhCCCeEEEEeccH-----HHHHHHHHHHhhcCCeEEEEeCCC
Q psy2046 23 GKLKKLDEILPDLKKNGHRVLIFSQFI-----FVLDILGHYMDIRGWRHLRLDGAT 73 (138)
Q Consensus 23 ~K~~~l~~ll~~~~~~~~k~iif~~~~-----~~~~~l~~~l~~~g~~~~~i~g~~ 73 (138)
.|+-...++..++ ...|++||++-. +.+..+.++....+++...+-.+.
T Consensus 147 e~i~~~lki~~el--~~kkllvfvNl~~YLt~eEl~~L~e~i~~~~i~vL~IE~~~ 200 (220)
T 3s5u_A 147 EKVMEITQVHRYL--SKKKLLIFINACTYLTEDEVQQVVEYISLNNVDVLFLEQRV 200 (220)
T ss_dssp HHHHHHHHHHHHC--TTCCEEEEESGGGGCCHHHHHHHHHHHHHTTCCEEEEESSC
T ss_pred HHHHHHHHHHHHh--cCCCEEEEEChHHhCCHHHHHHHHHHHHHhCCeEEEEeccc
Confidence 4455555555443 356899999866 457778888888888888877763
No 365
>1ry2_A Acetyl-coenzyme A synthetase 1, acyl-activating enzyme 1; AMP forming, related to firefly luciferase, ligase; HET: AMP; 2.30A {Saccharomyces cerevisiae} SCOP: e.23.1.1
Probab=28.20 E-value=2.1e+02 Score=22.14 Aligned_cols=71 Identities=13% Similarity=0.130 Sum_probs=43.9
Q ss_pred hHHHHHHHHH-Hh-hhCCCeEEEEeccHHHHHHHHHHHhhcCCeEEEEeCCCChHHHHHHHHHHhcCCCceEEEEec
Q psy2046 24 KLKKLDEILP-DL-KKNGHRVLIFSQFIFVLDILGHYMDIRGWRHLRLDGATQVSSRQELIDEYNRDQDLFAFLLST 98 (138)
Q Consensus 24 K~~~l~~ll~-~~-~~~~~k~iif~~~~~~~~~l~~~l~~~g~~~~~i~g~~~~~~R~~~~~~F~~~~~~~vll~~~ 98 (138)
+...+...|. .+ ...|++|.|+.+..-..-..--..-+.|.-++.++.+.+.++-..+++.- .+++++.+.
T Consensus 122 ~v~~lA~~L~~~~Gv~~Gd~V~i~~~~~~e~v~a~lA~~~~Gav~vpl~~~~~~~~l~~~l~~~----~~~~li~~~ 194 (663)
T 1ry2_A 122 EVCQVAQVLTYSMGVRKGDTVAVYMPMVPEAIITLLAISRIGAIHSVVFAGFSSNSLRDRINDG----DSKVVITTD 194 (663)
T ss_dssp HHHHHHHHHHHTSCCCTTCEEEECCCSSHHHHHHHHHHHHTTCEEEECCTTSCHHHHHHHHHHH----TCSEEEEES
T ss_pred HHHHHHHHHHHhcCCCCCCEEEEEcCCCHHHHHHHHHHHHcCCEEEeeCCCCCHHHHHHHHHhc----CCeEEEEcc
Confidence 3444555554 32 24578999998765443333333345688899999999988777777765 234455543
No 366
>2pln_A HP1043, response regulator; signaling protein; 1.80A {Helicobacter pylori} PDB: 2hqo_A
Probab=28.20 E-value=88 Score=17.85 Aligned_cols=17 Identities=6% Similarity=-0.152 Sum_probs=10.9
Q ss_pred CCC-CccchhHHHHHHhh
Q psy2046 118 VDF-NPYNDKQAEDRCHR 134 (138)
Q Consensus 118 ~~~-~~~~~~Q~~gR~~R 134 (138)
-|. ++....+++.++.+
T Consensus 115 kP~~~~~~l~~~i~~~~~ 132 (137)
T 2pln_A 115 KPYRSIKALVARIEARLR 132 (137)
T ss_dssp SSCSCHHHHHHHHHHHTC
T ss_pred CCCCCHHHHHHHHHHHHh
Confidence 456 77777777766643
No 367
>3m9w_A D-xylose-binding periplasmic protein; xylose binding protein, conformational changes, SUGA protein; 2.15A {Escherichia coli} PDB: 3m9x_A* 3ma0_A*
Probab=28.14 E-value=1.4e+02 Score=20.08 Aligned_cols=59 Identities=14% Similarity=0.048 Sum_probs=25.8
Q ss_pred hhCCCeEEEEeccHH---HHHHHHHHHhhcCCeEEEEeCCCChHHHHHHHHHHhcCCCceEEEEe
Q psy2046 36 KKNGHRVLIFSQFIF---VLDILGHYMDIRGWRHLRLDGATQVSSRQELIDEYNRDQDLFAFLLS 97 (138)
Q Consensus 36 ~~~~~k~iif~~~~~---~~~~l~~~l~~~g~~~~~i~g~~~~~~R~~~~~~F~~~~~~~vll~~ 97 (138)
.+.|-.++++..... ....+. .+...++....+.+..+.. -...++.+.....+ ++++.
T Consensus 29 ~~~g~~~~~~~~~~~~~~~~~~i~-~l~~~~vdgiIi~~~~~~~-~~~~~~~~~~~~iP-vV~~~ 90 (313)
T 3m9w_A 29 ESLGAKVFVQSANGNEETQMSQIE-NMINRGVDVLVIIPYNGQV-LSNVVKEAKQEGIK-VLAYD 90 (313)
T ss_dssp HHTSCEEEEEECTTCHHHHHHHHH-HHHHTTCSEEEEECSSTTS-CHHHHHHHHTTTCE-EEEES
T ss_pred HHcCCEEEEECCCCCHHHHHHHHH-HHHHcCCCEEEEeCCChhh-hHHHHHHHHHCCCe-EEEEC
Confidence 344656665543221 122333 3334566666666544321 12345555444333 34443
No 368
>2btm_A TIM, protein (triosephosphate isomerase); thermophilic triose-phosphate, glycolysis; 2.40A {Geobacillus stearothermophilus} SCOP: c.1.1.1 PDB: 1btm_A
Probab=27.81 E-value=43 Score=23.00 Aligned_cols=12 Identities=17% Similarity=0.166 Sum_probs=9.3
Q ss_pred cCEEEEeCCCCC
Q psy2046 110 ADTVIIHDVDFN 121 (138)
Q Consensus 110 ~~~vi~~~~~~~ 121 (138)
.+.||-|+|.|-
T Consensus 159 ~~~vIAYEPvWA 170 (252)
T 2btm_A 159 KQAVIAYEPIWA 170 (252)
T ss_dssp TTCEEEECCGGG
T ss_pred CCEEEEECCHHH
Confidence 456788999984
No 369
>1yt8_A Thiosulfate sulfurtransferase; rhodanase domains, cyanide detoxification, structural genomics, PSI, protein structure initiative; 1.90A {Pseudomonas aeruginosa} SCOP: c.46.1.2 c.46.1.2 c.46.1.2 c.46.1.2
Probab=27.81 E-value=70 Score=24.19 Aligned_cols=38 Identities=13% Similarity=0.067 Sum_probs=29.9
Q ss_pred hCCCeEEEEeccHHHHHHHHHHHhhcCC-eEEEEeCCCC
Q psy2046 37 KNGHRVLIFSQFIFVLDILGHYMDIRGW-RHLRLDGATQ 74 (138)
Q Consensus 37 ~~~~k~iif~~~~~~~~~l~~~l~~~g~-~~~~i~g~~~ 74 (138)
..++++|++|.+-.........|+..|+ .+..+.|+..
T Consensus 428 ~~~~~ivv~C~sG~rs~~aa~~L~~~G~~~v~~l~GG~~ 466 (539)
T 1yt8_A 428 GTAERYVLTCGSSLLARFAVAEVQALSGKPVFLLDGGTS 466 (539)
T ss_dssp CCCSEEEEECSSSHHHHHHHHHHHHHHCSCEEEETTHHH
T ss_pred CCCCeEEEEeCCChHHHHHHHHHHHcCCCCEEEeCCcHH
Confidence 4567899999988777788888888888 4777888653
No 370
>2l69_A Rossmann 2X3 fold protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Artificial gene}
Probab=27.63 E-value=93 Score=17.92 Aligned_cols=30 Identities=13% Similarity=0.223 Sum_probs=23.7
Q ss_pred EEEEeccHHHHHHHHHHHhhcCCeEEEEeC
Q psy2046 42 VLIFSQFIFVLDILGHYMDIRGWRHLRLDG 71 (138)
Q Consensus 42 ~iif~~~~~~~~~l~~~l~~~g~~~~~i~g 71 (138)
+++|+--.+.+....+.+++.|+++..+.+
T Consensus 5 ivvfstdeetlrkfkdiikkngfkvrtvrs 34 (134)
T 2l69_A 5 IVVFSTDEETLRKFKDIIKKNGFKVRTVRS 34 (134)
T ss_dssp EEECCCCHHHHHHHHHHHHHTTCEEEEECS
T ss_pred EEEEeCCHHHHHHHHHHHHhcCceEEEecC
Confidence 567777778888888888888888777754
No 371
>1okg_A Possible 3-mercaptopyruvate sulfurtransferase; rhodanese, prolyl isomerase, catalytic triad, serine protease, leishmania pyruvate; HET: CSR; 2.10A {Leishmania major} SCOP: c.46.1.2 c.46.1.2 d.26.1.3
Probab=27.60 E-value=86 Score=22.54 Aligned_cols=49 Identities=12% Similarity=-0.019 Sum_probs=31.3
Q ss_pred HHHHHHHHHh-hhCCCeEEEEe-ccH-HHHHHHHHHHhhcCCeEEEEeCCCC
Q psy2046 26 KKLDEILPDL-KKNGHRVLIFS-QFI-FVLDILGHYMDIRGWRHLRLDGATQ 74 (138)
Q Consensus 26 ~~l~~ll~~~-~~~~~k~iif~-~~~-~~~~~l~~~l~~~g~~~~~i~g~~~ 74 (138)
..+.+.+..+ ...+..+|||| ..- .........|+..|+++..+.|+..
T Consensus 81 ~~f~~~l~~~gi~~d~~VVvYc~~~G~rsa~ra~~~L~~~G~~V~~L~GG~~ 132 (373)
T 1okg_A 81 AEFIDWCMANGMAGELPVLCYDDECGAMGGCRLWWMLNSLGADAYVINGGFQ 132 (373)
T ss_dssp HHHHHHHHHTTCSSSSCEEEECSSTTTTTHHHHHHHHHHHTCCEEEETTTTH
T ss_pred HHHHHHHHHcCCCCCCeEEEEeCCCCchHHHHHHHHHHHcCCeEEEeCCCHH
Confidence 4455555443 24467899999 332 2223666778888997778888763
No 372
>3dbi_A Sugar-binding transcriptional regulator, LACI FAM; structural genomics, sugar-binding transcriptional regulator structure initiative, PSI-2; HET: MSE; 2.45A {Escherichia coli K12}
Probab=27.50 E-value=1.5e+02 Score=20.26 Aligned_cols=47 Identities=13% Similarity=0.047 Sum_probs=30.9
Q ss_pred HHHHHHHHHHhhcCCeEEEEeCCCChHHHHHHHHHHhcCCCceEEEE
Q psy2046 50 FVLDILGHYMDIRGWRHLRLDGATQVSSRQELIDEYNRDQDLFAFLL 96 (138)
Q Consensus 50 ~~~~~l~~~l~~~g~~~~~i~g~~~~~~R~~~~~~F~~~~~~~vll~ 96 (138)
....-+++.+.+.|+.........+...-.+.++.+......-+++.
T Consensus 80 ~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~ 126 (338)
T 3dbi_A 80 ELLFHAARMAEEKGRQLLLADGKHSAEEERQAIQYLLDLRCDAIMIY 126 (338)
T ss_dssp HHHHHHHHHHHHTTCEEEEEECTTSHHHHHHHHHHHHHTTCSEEEEC
T ss_pred HHHHHHHHHHHHCCCEEEEEeCCCChHHHHHHHHHHHhCCCCEEEEe
Confidence 44667778888889888777776666555567777765443333443
No 373
>3mm4_A Histidine kinase homolog; receiver domain, CKI1, cytokinin signaling, ROS fold, CHEY-like, transferase; 2.00A {Arabidopsis thaliana} PDB: 3mmn_A
Probab=27.48 E-value=1.2e+02 Score=19.17 Aligned_cols=26 Identities=19% Similarity=0.270 Sum_probs=19.5
Q ss_pred CCeEEEEeccHHHHHHHHHHHhhcCC
Q psy2046 39 GHRVLIFSQFIFVLDILGHYMDIRGW 64 (138)
Q Consensus 39 ~~k~iif~~~~~~~~~l~~~l~~~g~ 64 (138)
+.+++|.-+.......+...|...|+
T Consensus 61 ~~~ILiVdDd~~~~~~l~~~L~~~g~ 86 (206)
T 3mm4_A 61 GKRVLVVDDNFISRKVATGKLKKMGV 86 (206)
T ss_dssp TCEEEEECSCHHHHHHHHHHHHHTTC
T ss_pred CCEEEEEeCCHHHHHHHHHHHHHcCC
Confidence 34777777777777788888877776
No 374
>2qh8_A Uncharacterized protein; conserved domain protein, structural genomics, PSI-2, MCSG, BIG_563.1, protein structure initiative; HET: HIS; 2.20A {Vibrio cholerae o1 biovar eltor str} PDB: 3lkv_A*
Probab=27.47 E-value=1.4e+02 Score=20.05 Aligned_cols=18 Identities=6% Similarity=-0.324 Sum_probs=10.0
Q ss_pred HHHHHHhhcCCeEEEEeC
Q psy2046 54 ILGHYMDIRGWRHLRLDG 71 (138)
Q Consensus 54 ~l~~~l~~~g~~~~~i~g 71 (138)
.+.+.|...++....+.|
T Consensus 60 ~~~~~l~~~~vDgII~~~ 77 (302)
T 2qh8_A 60 QIARQFVGENPDVLVGIA 77 (302)
T ss_dssp HHHHHHHHTCCSEEEEES
T ss_pred HHHHHHHhCCCCEEEECC
Confidence 344445556666666655
No 375
>3kjx_A Transcriptional regulator, LACI family; LACL family, protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.33A {Silicibacter pomeroyi}
Probab=27.41 E-value=1.5e+02 Score=20.31 Aligned_cols=48 Identities=6% Similarity=-0.098 Sum_probs=31.4
Q ss_pred HHHHHHHHHHhhcCCeEEEEeCCCChHHHHHHHHHHhcCCCceEEEEe
Q psy2046 50 FVLDILGHYMDIRGWRHLRLDGATQVSSRQELIDEYNRDQDLFAFLLS 97 (138)
Q Consensus 50 ~~~~~l~~~l~~~g~~~~~i~g~~~~~~R~~~~~~F~~~~~~~vll~~ 97 (138)
..+.-+++.+.+.|+.........+.+.-.+.++.+......-+++..
T Consensus 85 ~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~i~~l~~~~vdGiIi~~ 132 (344)
T 3kjx_A 85 EVLTGINQVLEDTELQPVVGVTDYLPEKEEKVLYEMLSWRPSGVIIAG 132 (344)
T ss_dssp HHHHHHHHHHTSSSSEEEEEECTTCHHHHHHHHHHHHTTCCSEEEEEC
T ss_pred HHHHHHHHHHHHCCCEEEEEeCCCCHHHHHHHHHHHHhCCCCEEEEEC
Confidence 456677888888888877777666666556677777654443344443
No 376
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=27.40 E-value=1e+02 Score=24.10 Aligned_cols=58 Identities=12% Similarity=0.069 Sum_probs=41.2
Q ss_pred ccCchHHHH-HHHHHHhhhCCCeEEEEeccHHHHHHHHHHHh---hcCCeEEEEeCCCChHH
Q psy2046 20 VESGKLKKL-DEILPDLKKNGHRVLIFSQFIFVLDILGHYMD---IRGWRHLRLDGATQVSS 77 (138)
Q Consensus 20 ~~s~K~~~l-~~ll~~~~~~~~k~iif~~~~~~~~~l~~~l~---~~g~~~~~i~g~~~~~~ 77 (138)
.-++|.... .-++..+...+.++++-++.+.-+....+.++ ..|+++..++|+.+...
T Consensus 48 TGsGKT~~~~l~il~~~~~~~~~~l~i~P~raLa~q~~~~~~~l~~~g~~v~~~~G~~~~~~ 109 (720)
T 2zj8_A 48 TASGKTLIAEIAMVHRILTQGGKAVYIVPLKALAEEKFQEFQDWEKIGLRVAMATGDYDSKD 109 (720)
T ss_dssp GGGCHHHHHHHHHHHHHHHHCSEEEEECSSGGGHHHHHHHTGGGGGGTCCEEEECSCSSCCC
T ss_pred CccHHHHHHHHHHHHHHHhCCCEEEEEcCcHHHHHHHHHHHHHHHhcCCEEEEecCCCCccc
Confidence 346787655 44555555457799999999877777766664 34889999999876544
No 377
>1czn_A Flavodoxin; FMN binding, redox potential, electron transport; HET: FMN; 1.70A {Synechococcus elongatus} SCOP: c.23.5.1 PDB: 1czl_A* 1czu_A* 1d04_A* 1ofv_A* 1czr_A* 1czk_A* 1czo_A* 1czh_A* 1d03_A*
Probab=27.35 E-value=1.1e+02 Score=18.66 Aligned_cols=29 Identities=24% Similarity=0.368 Sum_probs=20.8
Q ss_pred CCCeEEEEec---------cHHHHHHHHHHHhhcCCeE
Q psy2046 38 NGHRVLIFSQ---------FIFVLDILGHYMDIRGWRH 66 (138)
Q Consensus 38 ~~~k~iif~~---------~~~~~~~l~~~l~~~g~~~ 66 (138)
.+.++.+|+. +......+.+.|...|...
T Consensus 79 ~gk~~~~f~t~~~~~~~~~~~~a~~~l~~~l~~~g~~~ 116 (169)
T 1czn_A 79 QGKKVAYFGAGDQVGYSDNFQDAMGILEEKISSLGSQT 116 (169)
T ss_dssp TTCEEEEEEECCTTTTTTSTTHHHHHHHHHHHHTTCEE
T ss_pred CCCEEEEEEECCCchhhHHHHHHHHHHHHHHHHCCCEE
Confidence 4678888883 3466788888888777653
No 378
>3dmy_A Protein FDRA; predicted actyl-COA synthetase, nysgrc, PSI-II, STRU genomics, protein structure initiative; 2.07A {Escherichia coli}
Probab=27.29 E-value=2e+02 Score=21.68 Aligned_cols=59 Identities=12% Similarity=0.014 Sum_probs=38.7
Q ss_pred eEEEEeccHHHHHHHHHHHhhcCCe--EEEEeCCC------ChHHHHHHHHHHhcCCCceEEEEecc
Q psy2046 41 RVLIFSQFIFVLDILGHYMDIRGWR--HLRLDGAT------QVSSRQELIDEYNRDQDLFAFLLSTK 99 (138)
Q Consensus 41 k~iif~~~~~~~~~l~~~l~~~g~~--~~~i~g~~------~~~~R~~~~~~F~~~~~~~vll~~~~ 99 (138)
++=+++++-.....+..++...|+. +..-.|+. ....=.+.++.|.+++..+++++...
T Consensus 114 ~vaivSqSGal~~~i~~~~~~~g~G~S~~Vs~Gn~~l~~~i~dv~~~D~l~~l~~Dp~T~~I~ly~E 180 (480)
T 3dmy_A 114 NIGVIGASGTGIQELCSQIALAGEGITHAIGLGGRDLSREVGGISALTALEMLSADEKSEVLAFVSK 180 (480)
T ss_dssp EEEEEESCSHHHHHHHHHHHHTTCCEEEEEECCTTTTSTTTTTHHHHHHHHHHHTCTTCCEEEEEES
T ss_pred CEEEEeccHHHHHHHHHHHHHcCCCceEEEEcCCCccccccCCCCHHHHHHHHhcCCCCCEEEEEEe
Confidence 4667777777777777777666544 44444555 44556677888887777777666654
No 379
>3d8u_A PURR transcriptional regulator; APC91343.1, vibrio parahaem RIMD 2210633, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.88A {Vibrio parahaemolyticus}
Probab=27.27 E-value=1.3e+02 Score=19.59 Aligned_cols=38 Identities=16% Similarity=-0.089 Sum_probs=17.8
Q ss_pred hhCCCeEEEEeccH--HHHHHHHHHHhhcCCeEEEEeCCC
Q psy2046 36 KKNGHRVLIFSQFI--FVLDILGHYMDIRGWRHLRLDGAT 73 (138)
Q Consensus 36 ~~~~~k~iif~~~~--~~~~~l~~~l~~~g~~~~~i~g~~ 73 (138)
.+.|-.++++.... .....+.+.+...++....+.+..
T Consensus 30 ~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgii~~~~~ 69 (275)
T 3d8u_A 30 NKAGYQLLLGYSDYSIEQEEKLLSTFLESRPAGVVLFGSE 69 (275)
T ss_dssp HHTSCEECCEECTTCHHHHHHHHHHHHTSCCCCEEEESSC
T ss_pred HHCCCEEEEEcCCCCHHHHHHHHHHHHhcCCCEEEEeCCC
Confidence 44566666654322 112222333444566656665543
No 380
>1jr2_A Uroporphyrinogen-III synthase; heme biosynthesis, HEAM biosynthesis, lyase; 1.84A {Homo sapiens} SCOP: c.113.1.1
Probab=27.25 E-value=50 Score=22.56 Aligned_cols=44 Identities=18% Similarity=0.197 Sum_probs=30.0
Q ss_pred CchHHHHHHHHHHhhhCCCeEEEEeccHHHHHHHHHHHhhcCCeE
Q psy2046 22 SGKLKKLDEILPDLKKNGHRVLIFSQFIFVLDILGHYMDIRGWRH 66 (138)
Q Consensus 22 s~K~~~l~~ll~~~~~~~~k~iif~~~~~~~~~l~~~l~~~g~~~ 66 (138)
......|.+.+......+++++++.... ..+.|.+.|++.|..+
T Consensus 140 ~~~ae~L~~~l~~~~~~g~~vLi~rg~~-~r~~L~~~L~~~G~~v 183 (286)
T 1jr2_A 140 CGNAEKLAEYICSRESSALPLLFPCGNL-KREILPKALKDKGIAM 183 (286)
T ss_dssp CSSHHHHHHHHHTSCCCSSCEEEEESCG-GGCCHHHHHHTTTCCE
T ss_pred ccCHHHHHHHHHhcccCCCeEEEECChh-hHHHHHHHHHHCCCee
Confidence 3456667777654333467888887653 3578889999988764
No 381
>1dbq_A Purine repressor; transcription regulation, DNA-binding regulatory protein; 2.20A {Escherichia coli} SCOP: c.93.1.1 PDB: 1jhz_A
Probab=27.23 E-value=1.4e+02 Score=19.71 Aligned_cols=37 Identities=8% Similarity=-0.032 Sum_probs=16.9
Q ss_pred hCCCeEEEEeccH--HHHHHHHHHHhhcCCeEEEEeCCC
Q psy2046 37 KNGHRVLIFSQFI--FVLDILGHYMDIRGWRHLRLDGAT 73 (138)
Q Consensus 37 ~~~~k~iif~~~~--~~~~~l~~~l~~~g~~~~~i~g~~ 73 (138)
+.|-.++++.... .....+.+.+...++....+.+..
T Consensus 35 ~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgii~~~~~ 73 (289)
T 1dbq_A 35 QKGYTLILGNAWNNLEKQRAYLSMMAQKRVDGLLVMCSE 73 (289)
T ss_dssp HHTCEEEEEECTTCHHHHHHHHHHHHHTTCSEEEEECSC
T ss_pred HcCCeEEEEcCCCChHHHHHHHHHHHhCCCCEEEEEecc
Confidence 3466666654321 111122233334566666665544
No 382
>2wlr_A Putative thiosulfate sulfurtransferase YNJE; rhodanese domains; HET: EPE; 1.45A {Escherichia coli} PDB: 2wlx_A* 3ipo_A* 3ipp_A
Probab=27.10 E-value=63 Score=23.55 Aligned_cols=37 Identities=19% Similarity=0.222 Sum_probs=29.4
Q ss_pred hCCCeEEEEeccHHHHHHHHHHHhhcCCe-EEEEeCCC
Q psy2046 37 KNGHRVLIFSQFIFVLDILGHYMDIRGWR-HLRLDGAT 73 (138)
Q Consensus 37 ~~~~k~iif~~~~~~~~~l~~~l~~~g~~-~~~i~g~~ 73 (138)
..++++|+||..-.........|...|++ +..+.|+.
T Consensus 356 ~~~~~ivvyC~sG~rs~~aa~~L~~~G~~~v~~~~GG~ 393 (423)
T 2wlr_A 356 KPEQQVSFYCGTGWRASETFMYARAMGWKNVSVYDGGW 393 (423)
T ss_dssp CTTSEEEEECSSSHHHHHHHHHHHHTTCSSEEEESSHH
T ss_pred CCCCcEEEECCcHHHHHHHHHHHHHcCCCCcceeCccH
Confidence 34678999999877777777889999995 77888865
No 383
>3gyb_A Transcriptional regulators (LACI-family transcriptional regulatory protein); protein structure initiative II(PSI II), nysgxrc; 1.60A {Corynebacterium glutamicum}
Probab=26.97 E-value=1.4e+02 Score=19.63 Aligned_cols=38 Identities=13% Similarity=0.155 Sum_probs=20.9
Q ss_pred HHHHHHHHHHhhcCCeEEEEeCCCChHHHHHHHHHHhcC
Q psy2046 50 FVLDILGHYMDIRGWRHLRLDGATQVSSRQELIDEYNRD 88 (138)
Q Consensus 50 ~~~~~l~~~l~~~g~~~~~i~g~~~~~~R~~~~~~F~~~ 88 (138)
....-+++.+++.|+....+... +.....+.++.+...
T Consensus 22 ~~~~gi~~~a~~~g~~~~~~~~~-~~~~~~~~~~~l~~~ 59 (280)
T 3gyb_A 22 DLIQSLSDVLTPKGYRLSVIDSL-TSQAGTDPITSALSM 59 (280)
T ss_dssp HHHHHHHHHHGGGTCEEEEECSS-SSCSSSCHHHHHHTT
T ss_pred HHHHHHHHHHHHCCCEEEEEeCC-CchHHHHHHHHHHhC
Confidence 34555666666666666665555 444344455555443
No 384
>2dri_A D-ribose-binding protein; sugar transport; HET: RIP; 1.60A {Escherichia coli} SCOP: c.93.1.1 PDB: 1urp_A* 1ba2_A 1dbp_A* 1drj_A* 1drk_A* 2gx6_A*
Probab=26.93 E-value=1.4e+02 Score=19.62 Aligned_cols=35 Identities=17% Similarity=0.249 Sum_probs=15.5
Q ss_pred hCCCeEEEEeccHH---HHHHHHHHHhhcCCeEEEEeCC
Q psy2046 37 KNGHRVLIFSQFIF---VLDILGHYMDIRGWRHLRLDGA 72 (138)
Q Consensus 37 ~~~~k~iif~~~~~---~~~~l~~~l~~~g~~~~~i~g~ 72 (138)
+.|-.++++..... ....+.. +...++....+.+.
T Consensus 29 ~~g~~~~~~~~~~~~~~~~~~i~~-l~~~~vdgiIi~~~ 66 (271)
T 2dri_A 29 KLGYNLVVLDSQNNPAKELANVQD-LTVRGTKILLINPT 66 (271)
T ss_dssp HHTCEEEEEECTTCHHHHHHHHHH-HTTTTEEEEEECCS
T ss_pred HcCcEEEEeCCCCCHHHHHHHHHH-HHHcCCCEEEEeCC
Confidence 34656666543221 1223333 33445555555543
No 385
>2nn3_C Caspase-1; cysteine protease, hydrolase; 3.00A {Spodoptera frugiperda}
Probab=26.62 E-value=1.7e+02 Score=20.60 Aligned_cols=46 Identities=13% Similarity=0.146 Sum_probs=37.4
Q ss_pred eEEEEecc-------------HHHHHHHHHHHhhcCCeEEEEeCCCChHHHHHHHHHHhc
Q psy2046 41 RVLIFSQF-------------IFVLDILGHYMDIRGWRHLRLDGATQVSSRQELIDEYNR 87 (138)
Q Consensus 41 k~iif~~~-------------~~~~~~l~~~l~~~g~~~~~i~g~~~~~~R~~~~~~F~~ 87 (138)
-.|||.+. ..+.+.|.+.|+..|+.+. ++-..+..+-.+.+++|..
T Consensus 62 ~aLIInN~~F~~~~l~~R~Gt~~Da~~L~~~f~~LGF~V~-~~~dlt~~em~~~l~~f~~ 120 (310)
T 2nn3_C 62 MAIIFNHEHFDIHSLKSRTGTNVDSDNLSKVLKTLGFKVT-VFPNLKSEEINKFIQQTAE 120 (310)
T ss_dssp EEEEEECCCCSSTTCCCCTTHHHHHHHHHHHHHHTTCEEE-EEESCCHHHHHHHHHHHHS
T ss_pred EEEEEechhcCCCCcccCCCCHHHHHHHHHHHHHCCCEEE-EecCCCHHHHHHHHHHHHH
Confidence 57888864 5678899999999999964 5556888888899999974
No 386
>3ff4_A Uncharacterized protein; structural genomics, PSI- protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Cytophaga hutchinsonii atcc 33406}
Probab=26.32 E-value=1.1e+02 Score=18.21 Aligned_cols=35 Identities=9% Similarity=-0.021 Sum_probs=20.1
Q ss_pred CCeEEEEeccHHHHHHHHHHHhhcCCeEEEEeCCCC
Q psy2046 39 GHRVLIFSQFIFVLDILGHYMDIRGWRHLRLDGATQ 74 (138)
Q Consensus 39 ~~k~iif~~~~~~~~~l~~~l~~~g~~~~~i~g~~~ 74 (138)
-+-++||.+.....+.+++.. +.|.+.+.+..+..
T Consensus 59 vDlavi~~p~~~v~~~v~e~~-~~g~k~v~~~~G~~ 93 (122)
T 3ff4_A 59 VDTVTLYINPQNQLSEYNYIL-SLKPKRVIFNPGTE 93 (122)
T ss_dssp CCEEEECSCHHHHGGGHHHHH-HHCCSEEEECTTCC
T ss_pred CCEEEEEeCHHHHHHHHHHHH-hcCCCEEEECCCCC
Confidence 345666666655555555544 34666666665554
No 387
>3lua_A Response regulator receiver protein; two-component signal transduction system, histidine kinase, phosphorelay, receiver domain, nysgxrc; 2.40A {Clostridium thermocellum}
Probab=26.28 E-value=98 Score=17.73 Aligned_cols=91 Identities=3% Similarity=-0.030 Sum_probs=51.5
Q ss_pred CCCeEEEEeccHHHHHHHHHHHhh-cCCeEEEEeCCCC-hHHHHHHHHHHhc---CCCceEEEEeccccc----cccCcC
Q psy2046 38 NGHRVLIFSQFIFVLDILGHYMDI-RGWRHLRLDGATQ-VSSRQELIDEYNR---DQDLFAFLLSTKAGG----LGINLT 108 (138)
Q Consensus 38 ~~~k~iif~~~~~~~~~l~~~l~~-~g~~~~~i~g~~~-~~~R~~~~~~F~~---~~~~~vll~~~~~~~----~Gl~l~ 108 (138)
.+-.+..+.+..+. ...+.. .....+.++-.++ ...-.+.++..+. .+...+++++...-. ..+..
T Consensus 28 ~~~~v~~~~~~~~a----~~~l~~~~~~dlvi~D~~l~~~~~g~~~~~~l~~~~~~~~~~ii~ls~~~~~~~~~~~~~~- 102 (140)
T 3lua_A 28 GEYDFIEVENLKKF----YSIFKDLDSITLIIMDIAFPVEKEGLEVLSAIRNNSRTANTPVIIATKSDNPGYRHAALKF- 102 (140)
T ss_dssp CCCEEEEECSHHHH----HTTTTTCCCCSEEEECSCSSSHHHHHHHHHHHHHSGGGTTCCEEEEESCCCHHHHHHHHHS-
T ss_pred cCccEEEECCHHHH----HHHHhcCCCCcEEEEeCCCCCCCcHHHHHHHHHhCcccCCCCEEEEeCCCCHHHHHHHHHc-
Confidence 35566655443332 234444 5667788888887 6666777777664 344555666543211 11111
Q ss_pred ccCEEEEeCCCCCccchhHHHHHHhhc
Q psy2046 109 AADTVIIHDVDFNPYNDKQAEDRCHRV 135 (138)
Q Consensus 109 ~~~~vi~~~~~~~~~~~~Q~~gR~~R~ 135 (138)
+++. ++.-|+++....+++.++.+-
T Consensus 103 g~~~--~l~KP~~~~~l~~~i~~~~~~ 127 (140)
T 3lua_A 103 KVSD--YILKPYPTKRLENSVRSVLKI 127 (140)
T ss_dssp CCSE--EEESSCCTTHHHHHHHHHHCC
T ss_pred CCCE--EEECCCCHHHHHHHHHHHHHh
Confidence 2332 234578888888888887554
No 388
>3krs_A Triosephosphate isomerase; ssgcid, SBRI, emerald biostructures, university of washingto niaid, I structural genomics; 1.55A {Cryptosporidium parvum iowa II}
Probab=26.23 E-value=1.6e+02 Score=20.34 Aligned_cols=12 Identities=17% Similarity=0.191 Sum_probs=9.4
Q ss_pred cCEEEEeCCCCC
Q psy2046 110 ADTVIIHDVDFN 121 (138)
Q Consensus 110 ~~~vi~~~~~~~ 121 (138)
.+.||-|+|.|-
T Consensus 181 ~~~vIAYEPvWA 192 (271)
T 3krs_A 181 SNLVIAYEPIWA 192 (271)
T ss_dssp TTEEEEECCGGG
T ss_pred cCEEEEECChhh
Confidence 466788999993
No 389
>3e3m_A Transcriptional regulator, LACI family; structural genomics, DNA-binding, plasmid, transcription regulation, PSI-2; 1.60A {Silicibacter pomeroyi}
Probab=26.11 E-value=1.6e+02 Score=20.27 Aligned_cols=48 Identities=15% Similarity=0.057 Sum_probs=31.8
Q ss_pred HHHHHHHHHHhhcCCeEEEEeCCCChHHHHHHHHHHhcCCCceEEEEe
Q psy2046 50 FVLDILGHYMDIRGWRHLRLDGATQVSSRQELIDEYNRDQDLFAFLLS 97 (138)
Q Consensus 50 ~~~~~l~~~l~~~g~~~~~i~g~~~~~~R~~~~~~F~~~~~~~vll~~ 97 (138)
..+.-+++.+.+.|+.........+...-.+.++.+......-+++..
T Consensus 87 ~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdGiI~~~ 134 (355)
T 3e3m_A 87 QTAQSLTDVLEQGGLQLLLGYTAYSPEREEQLVETMLRRRPEAMVLSY 134 (355)
T ss_dssp HHHHHHHHHHHHTTCEEEEEECTTCHHHHHHHHHHHHHTCCSEEEEEC
T ss_pred HHHHHHHHHHHHCCCEEEEEeCCCChHHHHHHHHHHHhCCCCEEEEeC
Confidence 456677888888898887777766666556677777654443344443
No 390
>3mw8_A Uroporphyrinogen-III synthase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, lyase; 1.65A {Shewanella amazonensis}
Probab=25.87 E-value=13 Score=24.74 Aligned_cols=61 Identities=10% Similarity=0.020 Sum_probs=33.1
Q ss_pred CCCeEEEEeccHHHHHHHHHHHhhcCCeEE--EEeC-CCChHHHHHHHHHHhcCCCceEEEEecc
Q psy2046 38 NGHRVLIFSQFIFVLDILGHYMDIRGWRHL--RLDG-ATQVSSRQELIDEYNRDQDLFAFLLSTK 99 (138)
Q Consensus 38 ~~~k~iif~~~~~~~~~l~~~l~~~g~~~~--~i~g-~~~~~~R~~~~~~F~~~~~~~vll~~~~ 99 (138)
.+++++++... ...+.|.+.|++.|..+. .+|- ...........+.+..++..-+++.|+.
T Consensus 119 ~g~~vL~~rg~-~~r~~l~~~L~~~G~~v~~~~~Y~~~~~~~~~~~~~~~l~~~~~d~v~ftS~s 182 (240)
T 3mw8_A 119 SGKQIVIVRGK-GGREAMADGLRLRGANVSYLEVYQRACPPLDAPASVSRWQSFGIDTIVVTSGE 182 (240)
T ss_dssp TTCEEEEEEES-SSCCHHHHHHHHTTCEEEEEEEEEEECCCCCHHHHHHHHHHHTCCEEECCSHH
T ss_pred CCCEEEEEeCC-CcHHHHHHHHHHCCCEEEEEEEEEeeCCCCCHHHHHHHHHhCCCCEEEEcCHH
Confidence 56788887764 345788899998887632 2222 2222223344455554433333444433
No 391
>4dad_A Putative pilus assembly-related protein; response regulator receiver domain, CHEY-related protein, ST genomics; 2.50A {Burkholderia pseudomallei} PDB: 4dn6_A
Probab=25.73 E-value=1e+02 Score=17.79 Aligned_cols=94 Identities=18% Similarity=0.112 Sum_probs=48.5
Q ss_pred CeEEEEeccHHHHHHHHHHHhh-cCCeEEEEeCCCChHHHHHHHHHHhc-CCCceEEEEeccccc-cccCcCccCEEEEe
Q psy2046 40 HRVLIFSQFIFVLDILGHYMDI-RGWRHLRLDGATQVSSRQELIDEYNR-DQDLFAFLLSTKAGG-LGINLTAADTVIIH 116 (138)
Q Consensus 40 ~k~iif~~~~~~~~~l~~~l~~-~g~~~~~i~g~~~~~~R~~~~~~F~~-~~~~~vll~~~~~~~-~Gl~l~~~~~vi~~ 116 (138)
-.++.+.+..+.+..+ ... .....+.++-.++...-...++.++. .+...+++++..... .-.....+...-++
T Consensus 46 ~~v~~~~~~~~~~~~~---~~~~~~~dlvi~D~~l~~~~g~~~~~~l~~~~~~~~ii~lt~~~~~~~~~~~~~~ga~~~l 122 (146)
T 4dad_A 46 YRVTRTVGRAAQIVQR---TDGLDAFDILMIDGAALDTAELAAIEKLSRLHPGLTCLLVTTDASSQTLLDAMRAGVRDVL 122 (146)
T ss_dssp CEEEEECCCHHHHTTC---HHHHTTCSEEEEECTTCCHHHHHHHHHHHHHCTTCEEEEEESCCCHHHHHHHHTTTEEEEE
T ss_pred eEEEEeCCHHHHHHHH---HhcCCCCCEEEEeCCCCCccHHHHHHHHHHhCCCCcEEEEeCCCCHHHHHHHHHhCCceeE
Confidence 4566555544333332 222 44566777777666555666666653 234445555533211 11111122222334
Q ss_pred CCCCCccchhHHHHHHhhcC
Q psy2046 117 DVDFNPYNDKQAEDRCHRVG 136 (138)
Q Consensus 117 ~~~~~~~~~~Q~~gR~~R~G 136 (138)
.-|+++.....++.++.+..
T Consensus 123 ~Kp~~~~~L~~~i~~~~~~~ 142 (146)
T 4dad_A 123 RWPLEPRALDDALKRAAAQC 142 (146)
T ss_dssp ESSCCHHHHHHHHHHHHHTC
T ss_pred cCCCCHHHHHHHHHHHHhhh
Confidence 55788888888888876543
No 392
>2p9j_A Hypothetical protein AQ2171; secsg, riken, PSI, structural GENO protein structure initiative, southeast collaboratory for S genomics; 2.40A {Aquifex aeolicus}
Probab=25.64 E-value=1.1e+02 Score=18.23 Aligned_cols=59 Identities=14% Similarity=0.098 Sum_probs=34.8
Q ss_pred HHHHHHhhhCCCeEEEEeccHHHHHHHHHHHhhcCCeEEEEeCCC-ChHHHHHHHHHHhcCCC
Q psy2046 29 DEILPDLKKNGHRVLIFSQFIFVLDILGHYMDIRGWRHLRLDGAT-QVSSRQELIDEYNRDQD 90 (138)
Q Consensus 29 ~~ll~~~~~~~~k~iif~~~~~~~~~l~~~l~~~g~~~~~i~g~~-~~~~R~~~~~~F~~~~~ 90 (138)
.+.|..+.+.|-++.|.++... ..+...++..|+.. .+.+.. .+.--..+++.+.-.+.
T Consensus 42 ~~~l~~l~~~g~~~~i~T~~~~--~~~~~~l~~~gl~~-~~~~~kp~~~~~~~~~~~~~~~~~ 101 (162)
T 2p9j_A 42 GIGIKLLQKMGITLAVISGRDS--APLITRLKELGVEE-IYTGSYKKLEIYEKIKEKYSLKDE 101 (162)
T ss_dssp HHHHHHHHTTTCEEEEEESCCC--HHHHHHHHHTTCCE-EEECC--CHHHHHHHHHHTTCCGG
T ss_pred HHHHHHHHHCCCEEEEEeCCCc--HHHHHHHHHcCCHh-hccCCCCCHHHHHHHHHHcCCCHH
Confidence 4566666777889988887653 34556666667764 344443 33333456666654433
No 393
>1pg4_A Acetyl-COA synthetase; AMP-forming, adenylate-forming, thioester-forming, ligase; HET: COA PRX; 1.75A {Salmonella enterica} SCOP: e.23.1.1 PDB: 1pg3_A* 2p2f_A* 2p2b_A* 2p2q_A* 2p2j_A* 2p20_A* 2p2m_A*
Probab=25.55 E-value=2.3e+02 Score=21.77 Aligned_cols=70 Identities=16% Similarity=0.078 Sum_probs=43.9
Q ss_pred hHHHHHHHHHHh-hhCCCeEEEEeccHHHHHHHHHHHhhcCCeEEEEeCCCChHHHHHHHHHHhcCCCceEEEEe
Q psy2046 24 KLKKLDEILPDL-KKNGHRVLIFSQFIFVLDILGHYMDIRGWRHLRLDGATQVSSRQELIDEYNRDQDLFAFLLS 97 (138)
Q Consensus 24 K~~~l~~ll~~~-~~~~~k~iif~~~~~~~~~l~~~l~~~g~~~~~i~g~~~~~~R~~~~~~F~~~~~~~vll~~ 97 (138)
+...+...|... ...|++|.|+....-..-..--..-+.|.-++.++.+.+.++-..+++.. .+++++.+
T Consensus 116 ~v~~lA~~L~~~Gv~~Gd~V~i~~~~~~e~vva~lA~~~~Gav~vpl~~~~~~~~l~~~l~~~----~~~~li~~ 186 (652)
T 1pg4_A 116 DVCRFANTLLDLGIKKGDVVAIYMPMVPEAAVAMLACARIGAVHSVIFGGFSPEAVAGCIIDS----SSRLVITA 186 (652)
T ss_dssp HHHHHHHHHHHHTCCTTCEEEEECCSSHHHHHHHHHHHHHTCEEEECCTTSCHHHHHHHHHHH----TCSEEEEE
T ss_pred HHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHHHHHcCcEEEecCCCCCHHHHHHHHHhc----CCCEEEEc
Confidence 344555555443 35678999998765433322223345688899999999988777777765 23445554
No 394
>3tp9_A Beta-lactamase and rhodanese domain protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.70A {Alicyclobacillus acidocaldarius subsp}
Probab=25.43 E-value=61 Score=23.93 Aligned_cols=38 Identities=11% Similarity=0.045 Sum_probs=30.6
Q ss_pred hCCCeEEEEeccHHHHHHHHHHHhhcCCe-EEEEeCCCC
Q psy2046 37 KNGHRVLIFSQFIFVLDILGHYMDIRGWR-HLRLDGATQ 74 (138)
Q Consensus 37 ~~~~k~iif~~~~~~~~~l~~~l~~~g~~-~~~i~g~~~ 74 (138)
..++++++||..-.........|+..|++ +..+.|+.+
T Consensus 425 ~~~~~vvv~C~~G~ra~~a~~~L~~~G~~~v~~~~Gg~~ 463 (474)
T 3tp9_A 425 PRDGSVCVYCRTGGRSAIAASLLRAHGVGDVRNMVGGYE 463 (474)
T ss_dssp CSSSCEEEECSSSHHHHHHHHHHHHHTCSSEEEETTHHH
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHcCCCCEEEecChHH
Confidence 34568999999988888888889999985 778888653
No 395
>4es6_A Uroporphyrinogen-III synthase; heme-biosynthesis, cytoplasmi; 2.22A {Pseudomonas aeruginosa}
Probab=25.42 E-value=22 Score=23.82 Aligned_cols=42 Identities=19% Similarity=0.158 Sum_probs=27.9
Q ss_pred hHHHHHHHHH--H-hhhCCCeEEEEeccHHHHHHHHHHHhhcCCeE
Q psy2046 24 KLKKLDEILP--D-LKKNGHRVLIFSQFIFVLDILGHYMDIRGWRH 66 (138)
Q Consensus 24 K~~~l~~ll~--~-~~~~~~k~iif~~~~~~~~~l~~~l~~~g~~~ 66 (138)
-...|.+.+. . ....+++++++... ...+.|.+.|++.|+.+
T Consensus 115 ~~e~L~~~l~~~~~~~~~~~~vL~~rg~-~~r~~L~~~L~~~G~~v 159 (254)
T 4es6_A 115 DSEALLALPAFQDSLRVHDPKVLIMRGE-GGREFLAERLRGQGVQV 159 (254)
T ss_dssp SHHHHHTCHHHHHHTCSSSCEEEEEECS-SCCCHHHHHHHHTTCEE
T ss_pred CHHHHHHhHhhcccccCCCCEEEEEcCC-ccHHHHHHHHHHCCCEE
Confidence 3556666664 2 12357788887764 44578889999888864
No 396
>3kcn_A Adenylate cyclase homolog; SGX, PSI 2, structural genomics, protein structure initiative; 2.45A {Rhodopirellula baltica}
Probab=25.18 E-value=1.1e+02 Score=17.89 Aligned_cols=91 Identities=10% Similarity=-0.046 Sum_probs=46.3
Q ss_pred hCCCeEEEEeccHHHHHHHHHHHhhc-CCeEEEEeCCCChHHHHHHHHHHhc-CCCceEEEEeccccc----cccCcCcc
Q psy2046 37 KNGHRVLIFSQFIFVLDILGHYMDIR-GWRHLRLDGATQVSSRQELIDEYNR-DQDLFAFLLSTKAGG----LGINLTAA 110 (138)
Q Consensus 37 ~~~~k~iif~~~~~~~~~l~~~l~~~-g~~~~~i~g~~~~~~R~~~~~~F~~-~~~~~vll~~~~~~~----~Gl~l~~~ 110 (138)
+.+-.+..+.+..+.++.+ ... .+..+.++-.++...-.+.++..+. .+...+++++...-. ..+....+
T Consensus 25 ~~~~~v~~~~~~~~a~~~l----~~~~~~dlvi~D~~l~~~~g~~~~~~l~~~~~~~~ii~~s~~~~~~~~~~~~~~g~~ 100 (151)
T 3kcn_A 25 SFDFEVTTCESGPEALACI----KKSDPFSVIMVDMRMPGMEGTEVIQKARLISPNSVYLMLTGNQDLTTAMEAVNEGQV 100 (151)
T ss_dssp TTTSEEEEESSHHHHHHHH----HHSCCCSEEEEESCCSSSCHHHHHHHHHHHCSSCEEEEEECGGGHHHHHHHHHHTCC
T ss_pred ccCceEEEeCCHHHHHHHH----HcCCCCCEEEEeCCCCCCcHHHHHHHHHhcCCCcEEEEEECCCCHHHHHHHHHcCCe
Confidence 3455666555544433333 333 3577777776665555555555552 334445555433211 11121113
Q ss_pred CEEEEeCCCCCccchhHHHHHHh
Q psy2046 111 DTVIIHDVDFNPYNDKQAEDRCH 133 (138)
Q Consensus 111 ~~vi~~~~~~~~~~~~Q~~gR~~ 133 (138)
+.+ +.-|+++....+++.++.
T Consensus 101 ~~~--l~KP~~~~~L~~~i~~~l 121 (151)
T 3kcn_A 101 FRF--LNKPCQMSDIKAAINAGI 121 (151)
T ss_dssp SEE--EESSCCHHHHHHHHHHHH
T ss_pred eEE--EcCCCCHHHHHHHHHHHH
Confidence 333 345778888877776664
No 397
>2yv1_A Succinyl-COA ligase [ADP-forming] subunit alpha; COA-binding domain, structural genomics, NPPSFA; 1.70A {Methanocaldococcus jannaschii}
Probab=25.10 E-value=1.7e+02 Score=20.19 Aligned_cols=49 Identities=16% Similarity=0.217 Sum_probs=34.5
Q ss_pred CCCeEEEEeccHHHHHHHHHHHhhcCCe-EEEEeCCCChHHHHHHHHHHhc
Q psy2046 38 NGHRVLIFSQFIFVLDILGHYMDIRGWR-HLRLDGATQVSSRQELIDEYNR 87 (138)
Q Consensus 38 ~~~k~iif~~~~~~~~~l~~~l~~~g~~-~~~i~g~~~~~~R~~~~~~F~~ 87 (138)
.-+=++||++.....+.+.+.++ .|++ .+.+..+.+..+..++.+.-+.
T Consensus 70 ~~Dv~ii~vp~~~~~~~v~ea~~-~Gi~~vVi~t~G~~~~~~~~l~~~A~~ 119 (294)
T 2yv1_A 70 DANASVIFVPAPFAKDAVFEAID-AGIELIVVITEHIPVHDTMEFVNYAED 119 (294)
T ss_dssp CCCEEEECCCHHHHHHHHHHHHH-TTCSEEEECCSCCCHHHHHHHHHHHHH
T ss_pred CCCEEEEccCHHHHHHHHHHHHH-CCCCEEEEECCCCCHHHHHHHHHHHHH
Confidence 45678899988777777777665 6888 5566777887666666665543
No 398
>1jbe_A Chemotaxis protein CHEY; signaling protein; 1.08A {Escherichia coli} SCOP: c.23.1.1 PDB: 3chy_A 1a0o_A 1cey_A 1bdj_A 1eay_A 1f4v_A 1ffg_A 1ffs_A 1ffw_A 1fqw_A 2b1j_A 1chn_A 1djm_A 1kmi_Y* 1d4z_A 3olx_A 3olw_A 1cye_A 2che_A 2chf_A ...
Probab=25.07 E-value=97 Score=17.30 Aligned_cols=74 Identities=11% Similarity=0.074 Sum_probs=40.6
Q ss_pred HHhhcCCeEEEEeCCCChHHHHHHHHHHhc---CCCceEEEEeccccc----cccCcCccCEEEEeCCCCCccchhHHHH
Q psy2046 58 YMDIRGWRHLRLDGATQVSSRQELIDEYNR---DQDLFAFLLSTKAGG----LGINLTAADTVIIHDVDFNPYNDKQAED 130 (138)
Q Consensus 58 ~l~~~g~~~~~i~g~~~~~~R~~~~~~F~~---~~~~~vll~~~~~~~----~Gl~l~~~~~vi~~~~~~~~~~~~Q~~g 130 (138)
.+.......+.++-.++...-.+.++..+. .+...+++++..... ..+.. +++. ++.-|+++....+++.
T Consensus 44 ~~~~~~~dlvi~D~~l~~~~g~~l~~~l~~~~~~~~~~ii~~s~~~~~~~~~~~~~~-ga~~--~l~KP~~~~~l~~~i~ 120 (128)
T 1jbe_A 44 KLQAGGYGFVISDWNMPNMDGLELLKTIRAXXAMSALPVLMVTAEAKKENIIAAAQA-GASG--YVVKPFTAATLEEKLN 120 (128)
T ss_dssp HHTTCCCCEEEEESCCSSSCHHHHHHHHHC--CCTTCCEEEEESSCCHHHHHHHHHT-TCSE--EEESSCCHHHHHHHHH
T ss_pred HHHhcCCCEEEEeCCCCCCCHHHHHHHHHhhcccCCCcEEEEecCccHHHHHHHHHh-CcCc--eeecCCCHHHHHHHHH
Confidence 334445677777777665555566666664 233445555533211 12221 2322 2355788888888888
Q ss_pred HHhh
Q psy2046 131 RCHR 134 (138)
Q Consensus 131 R~~R 134 (138)
++.+
T Consensus 121 ~~~~ 124 (128)
T 1jbe_A 121 KIFE 124 (128)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7654
No 399
>2csu_A 457AA long hypothetical protein; structural genomics, PH0766, riken ST genomics/proteomics initiative, RSGI, NPPSFA; 2.20A {Pyrococcus horikoshii} SCOP: c.2.1.8 c.23.4.1 c.23.4.1
Probab=24.88 E-value=2.1e+02 Score=21.16 Aligned_cols=61 Identities=13% Similarity=-0.099 Sum_probs=47.4
Q ss_pred eEEEEeccHHHHHHHHHHHhhcCCe--EEEEeCCCChHHHHHHHHHHhcCCCceEEEEecccc
Q psy2046 41 RVLIFSQFIFVLDILGHYMDIRGWR--HLRLDGATQVSSRQELIDEYNRDQDLFAFLLSTKAG 101 (138)
Q Consensus 41 k~iif~~~~~~~~~l~~~l~~~g~~--~~~i~g~~~~~~R~~~~~~F~~~~~~~vll~~~~~~ 101 (138)
++=+++++-.....+..++...|+. ...-.|+...-.=.+.++.|.+++..+++++.....
T Consensus 151 ~v~~vsqSG~~~~~~~~~~~~~g~G~s~~vs~G~~~~~~~~d~l~~~~~D~~t~~I~l~~E~i 213 (457)
T 2csu_A 151 NVAFISQSGALGAGIVYKTIKEDIGFSKFISVGNMADVDFAELMEYLADTEEDKAIALYIEGV 213 (457)
T ss_dssp SEEEEESCHHHHHHHHHHHHHTTCEESEEEECTTCCSSCHHHHHHHHTTCSSCCEEEEEESCC
T ss_pred CEEEEeCCHHHHHHHHHHHHhcCCCeeEEEECCCcCCCCHHHHHHHHhcCCCCCEEEEEEecC
Confidence 5778888888888888888887654 556667766667788999999888888888776653
No 400
>3o1i_D Periplasmic protein TORT; ligand free, two component sensor, periplasmic binding prote signaling protein; HET: PE4; 2.80A {Vibrio parahaemolyticus} PDB: 3o1h_B* 3o1j_C
Probab=24.85 E-value=1.6e+02 Score=19.57 Aligned_cols=10 Identities=20% Similarity=0.146 Sum_probs=4.1
Q ss_pred cCCeEEEEeC
Q psy2046 62 RGWRHLRLDG 71 (138)
Q Consensus 62 ~g~~~~~i~g 71 (138)
.++....+.+
T Consensus 62 ~~vdgiii~~ 71 (304)
T 3o1i_D 62 WGANAIILGT 71 (304)
T ss_dssp HTCSEEEECC
T ss_pred cCCCEEEEeC
Confidence 3444444433
No 401
>3r1i_A Short-chain type dehydrogenase/reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.95A {Mycobacterium marinum}
Probab=24.84 E-value=1.6e+02 Score=19.74 Aligned_cols=54 Identities=11% Similarity=0.153 Sum_probs=33.7
Q ss_pred HHHhhhCCCeEEEEeccHHHHHHHHHHHhhcCCeEEEEeCCCCh-HHHHHHHHHH
Q psy2046 32 LPDLKKNGHRVLIFSQFIFVLDILGHYMDIRGWRHLRLDGATQV-SSRQELIDEY 85 (138)
Q Consensus 32 l~~~~~~~~k~iif~~~~~~~~~l~~~l~~~g~~~~~i~g~~~~-~~R~~~~~~F 85 (138)
.+.+.+.|.++++.......++.+.+.+...+..+..+.++.+. ++-.+.+++.
T Consensus 49 a~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~v~~~~~~~ 103 (276)
T 3r1i_A 49 ALAYAEAGAQVAVAARHSDALQVVADEIAGVGGKALPIRCDVTQPDQVRGMLDQM 103 (276)
T ss_dssp HHHHHHTTCEEEEEESSGGGGHHHHHHHHHTTCCCEEEECCTTCHHHHHHHHHHH
T ss_pred HHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEEcCCCCHHHHHHHHHHH
Confidence 34445667788888777766777777777666666667776643 3333444433
No 402
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=24.80 E-value=1.8e+02 Score=20.34 Aligned_cols=92 Identities=10% Similarity=0.081 Sum_probs=52.3
Q ss_pred ccCchHHHHH-HHHHHhhh--CCCeEEEEeccHHHHHHHHHHHhh----cCCeEEEEeCCCChHHHHHHHHHHhcCCCce
Q psy2046 20 VESGKLKKLD-EILPDLKK--NGHRVLIFSQFIFVLDILGHYMDI----RGWRHLRLDGATQVSSRQELIDEYNRDQDLF 92 (138)
Q Consensus 20 ~~s~K~~~l~-~ll~~~~~--~~~k~iif~~~~~~~~~l~~~l~~----~g~~~~~i~g~~~~~~R~~~~~~F~~~~~~~ 92 (138)
.-++|..... -++..+.. .+.+++|.++...-+..+.+.++. .+..+..+.|+.+.... .+....+ ...
T Consensus 86 TGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~-~~~ 161 (414)
T 3eiq_A 86 SGTGKTATFAISILQQIELDLKATQALVLAPTRELAQQIQKVVMALGDYMGASCHACIGGTNVRAE---VQKLQME-APH 161 (414)
T ss_dssp SCSSSHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHHHGGGSCCCEEECCCCTTHHHH---HHHHTTT-CCS
T ss_pred CCCcccHHHHHHHHHHHhhcCCceeEEEEeChHHHHHHHHHHHHHHhcccCceEEEEECCcchHHH---HHHHhcC-CCC
Confidence 3467876543 34443332 456899999998877766666655 36777788887764433 3333323 334
Q ss_pred EEEEeccccc-----cccCcCccCEEEE
Q psy2046 93 AFLLSTKAGG-----LGINLTAADTVII 115 (138)
Q Consensus 93 vll~~~~~~~-----~Gl~l~~~~~vi~ 115 (138)
++++++...- ..+++...+.+|+
T Consensus 162 iiv~T~~~l~~~l~~~~~~~~~~~~vVi 189 (414)
T 3eiq_A 162 IIVGTPGRVFDMLNRRYLSPKYIKMFVL 189 (414)
T ss_dssp EEEECHHHHHHHHHHTSSCSTTCCEEEE
T ss_pred EEEECHHHHHHHHHcCCcccccCcEEEE
Confidence 5665543321 2234445555555
No 403
>1kte_A Thioltransferase; redox-active center, electron transport, acetylation; 2.20A {Sus scrofa} SCOP: c.47.1.1 PDB: 1jhb_A 1b4q_A*
Probab=24.73 E-value=95 Score=17.06 Aligned_cols=52 Identities=8% Similarity=-0.054 Sum_probs=33.1
Q ss_pred CeEEEEec-cHHHHHHHHHHHhhcCCe---EEEEeCCCC---hHHHHHHHHHHhcCCCc
Q psy2046 40 HRVLIFSQ-FIFVLDILGHYMDIRGWR---HLRLDGATQ---VSSRQELIDEYNRDQDL 91 (138)
Q Consensus 40 ~k~iif~~-~~~~~~~l~~~l~~~g~~---~~~i~g~~~---~~~R~~~~~~F~~~~~~ 91 (138)
.++++|+. +...+..+...|...+++ +..++=... +..+..+.+.+....-+
T Consensus 12 ~~v~~f~~~~C~~C~~~~~~L~~~~~~~~~~~~vdi~~~~~~~~~~~~l~~~~g~~~vP 70 (105)
T 1kte_A 12 GKVVVFIKPTCPFCRKTQELLSQLPFKEGLLEFVDITATSDTNEIQDYLQQLTGARTVP 70 (105)
T ss_dssp TCEEEEECSSCHHHHHHHHHHHHSCBCTTSEEEEEGGGSTTHHHHHHHHHHHHSCCCSC
T ss_pred CCEEEEEcCCCHhHHHHHHHHHHcCCCCCccEEEEccCCCCHHHHHHHHHHHhCCCCcC
Confidence 36777764 446788899999998888 777765443 23344555566433334
No 404
>3m6m_D Sensory/regulatory protein RPFC; RPFF, REC, enoyl-COA hydratase, lyase-transferase COMP; 2.50A {Xanthomonas campestris PV}
Probab=24.73 E-value=1.1e+02 Score=17.78 Aligned_cols=17 Identities=0% Similarity=-0.314 Sum_probs=10.5
Q ss_pred CCCCCccchhHHHHHHh
Q psy2046 117 DVDFNPYNDKQAEDRCH 133 (138)
Q Consensus 117 ~~~~~~~~~~Q~~gR~~ 133 (138)
.-|+++....+++.++.
T Consensus 118 ~KP~~~~~L~~~l~~~~ 134 (143)
T 3m6m_D 118 AKPVVAAKLLDTLADLA 134 (143)
T ss_dssp ESSCCHHHHHHHHHHHC
T ss_pred eCCCCHHHHHHHHHHHH
Confidence 45666766666666553
No 405
>1yio_A Response regulatory protein; transcription regulation, DNA binding protein; 2.20A {Pseudomonas fluorescens} SCOP: a.4.6.2 c.23.1.1 PDB: 1zn2_A
Probab=24.70 E-value=1.3e+02 Score=18.69 Aligned_cols=77 Identities=12% Similarity=0.035 Sum_probs=38.2
Q ss_pred HHhhcCCeEEEEeCCCChHHHHHHHHHHhc-CCCceEEEEeccccc-cccCcCccCEEEEeCCCCCccchhHHHHHHhh
Q psy2046 58 YMDIRGWRHLRLDGATQVSSRQELIDEYNR-DQDLFAFLLSTKAGG-LGINLTAADTVIIHDVDFNPYNDKQAEDRCHR 134 (138)
Q Consensus 58 ~l~~~g~~~~~i~g~~~~~~R~~~~~~F~~-~~~~~vll~~~~~~~-~Gl~l~~~~~vi~~~~~~~~~~~~Q~~gR~~R 134 (138)
.+.......+.++-.++...-.+.++..+. .+...+++++..... .-...-.+...-++.-|+++....+++.++.+
T Consensus 43 ~~~~~~~dlvl~D~~lp~~~g~~~~~~l~~~~~~~~ii~ls~~~~~~~~~~a~~~Ga~~~l~Kp~~~~~L~~~i~~~~~ 121 (208)
T 1yio_A 43 HRRPEQHGCLVLDMRMPGMSGIELQEQLTAISDGIPIVFITAHGDIPMTVRAMKAGAIEFLPKPFEEQALLDAIEQGLQ 121 (208)
T ss_dssp HCCTTSCEEEEEESCCSSSCHHHHHHHHHHTTCCCCEEEEESCTTSCCCHHHHHTTEEEEEESSCCHHHHHHHHHHHHH
T ss_pred hhhccCCCEEEEeCCCCCCCHHHHHHHHHhcCCCCCEEEEeCCCCHHHHHHHHHCCCcEEEeCCCCHHHHHHHHHHHHh
Confidence 344445667777766665445555665553 234445555533211 11111112222234457778777777766543
No 406
>2hfv_A Hypothetical protein RPA1041; NESG, GFT-alpha+beta, structural genomics, PSI-2, protein structure initiative; NMR {Pseudomonas aeruginosa} SCOP: d.58.5.5
Probab=24.68 E-value=1.1e+02 Score=17.69 Aligned_cols=33 Identities=27% Similarity=0.315 Sum_probs=27.4
Q ss_pred eEEEEeccHHHHHHHHHHHhhcCCeEEEEeCCC
Q psy2046 41 RVLIFSQFIFVLDILGHYMDIRGWRHLRLDGAT 73 (138)
Q Consensus 41 k~iif~~~~~~~~~l~~~l~~~g~~~~~i~g~~ 73 (138)
+.++-++....+..++..|+..||++...+..+
T Consensus 24 ~eL~ra~d~v~a~~~k~LLe~aGI~~fv~De~m 56 (97)
T 2hfv_A 24 RELLRTNDAVLLSAVGALLDGADIGHLVLDQNM 56 (97)
T ss_dssp EEEEEECCHHHHHHHHHHHHHTTCCEECCSCCC
T ss_pred eeeeecCCHHHHHHHHHHHHhCCCCEEEcCCcc
Confidence 677888889999999999999999987655544
No 407
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=24.46 E-value=1.1e+02 Score=19.38 Aligned_cols=29 Identities=28% Similarity=0.284 Sum_probs=23.2
Q ss_pred cCchHHHHHHHHHHhhhCCCeEEEEeccH
Q psy2046 21 ESGKLKKLDEILPDLKKNGHRVLIFSQFI 49 (138)
Q Consensus 21 ~s~K~~~l~~ll~~~~~~~~k~iif~~~~ 49 (138)
-++|-..+.+++......+.++++|....
T Consensus 13 gsGKTT~ll~~~~~~~~~g~~v~~~~~~~ 41 (184)
T 2orw_A 13 YSGKTTELLSFVEIYKLGKKKVAVFKPKI 41 (184)
T ss_dssp TSSHHHHHHHHHHHHHHTTCEEEEEEEC-
T ss_pred CCCHHHHHHHHHHHHHHCCCeEEEEeecc
Confidence 47899999999988777888998886654
No 408
>3eyt_A Uncharacterized protein SPOA0173; thioredoxin-like superfamily protein SPOA0173, silicibacter DSS, structural genomics, PSI-2; 1.95A {Silicibacter pomeroyi}
Probab=24.43 E-value=1.2e+02 Score=17.93 Aligned_cols=11 Identities=0% Similarity=-0.333 Sum_probs=4.6
Q ss_pred CccchhHHHHH
Q psy2046 121 NPYNDKQAEDR 131 (138)
Q Consensus 121 ~~~~~~Q~~gR 131 (138)
+...+.+.+.+
T Consensus 139 ~~~~l~~~i~~ 149 (158)
T 3eyt_A 139 SELLLGAEIAT 149 (158)
T ss_dssp CHHHHHHHHHH
T ss_pred CHHHHHHHHHH
Confidence 33344444443
No 409
>4imr_A 3-oxoacyl-(acyl-carrier-protein) reductase; oxidoreductase, nicotinamide adenine dinucleotide phosphate, structural genomics; HET: NAP; 1.96A {Agrobacterium fabrum}
Probab=24.33 E-value=1.6e+02 Score=19.68 Aligned_cols=40 Identities=15% Similarity=0.078 Sum_probs=22.4
Q ss_pred hhhCCCeEEEEeccHHHHHHHHHHHhhcCCeEEEEeCCCC
Q psy2046 35 LKKNGHRVLIFSQFIFVLDILGHYMDIRGWRHLRLDGATQ 74 (138)
Q Consensus 35 ~~~~~~k~iif~~~~~~~~~l~~~l~~~g~~~~~i~g~~~ 74 (138)
+.+.|.++++........+.+.+.+...+..+..+.++.+
T Consensus 53 la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~ 92 (275)
T 4imr_A 53 LAGAGAHVILHGVKPGSTAAVQQRIIASGGTAQELAGDLS 92 (275)
T ss_dssp HHHTTCEEEEEESSTTTTHHHHHHHHHTTCCEEEEECCTT
T ss_pred HHHCCCEEEEEcCCHHHHHHHHHHHHhcCCeEEEEEecCC
Confidence 3455666666665555555555555555555555555543
No 410
>2qu7_A Putative transcriptional regulator; structural genomics, PSI-2, protein structure initiative; 2.30A {Staphylococcus saprophyticus subsp}
Probab=24.28 E-value=1.6e+02 Score=19.45 Aligned_cols=37 Identities=16% Similarity=0.202 Sum_probs=20.0
Q ss_pred HHHHHHHHHhhcCCeEEEEeCCCChHHHHHHHHHHhc
Q psy2046 51 VLDILGHYMDIRGWRHLRLDGATQVSSRQELIDEYNR 87 (138)
Q Consensus 51 ~~~~l~~~l~~~g~~~~~i~g~~~~~~R~~~~~~F~~ 87 (138)
...-+++.+++.|+.........+.....+.++.+..
T Consensus 25 ~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~ 61 (288)
T 2qu7_A 25 VLTEISHECQKHHLHVAVASSEENEDKQQDLIETFVS 61 (288)
T ss_dssp HHHHHHHHHGGGTCEEEEEECTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCEEEEEeCCCCHHHHHHHHHHHHH
Confidence 3445556666666666555554444444445555543
No 411
>3bbl_A Regulatory protein of LACI family; protein structure initiative II, PSI-II, NYSGXRC, transcript regulator, periplasmic binding protein; 2.35A {Chloroflexus aggregans}
Probab=24.10 E-value=1.3e+02 Score=20.01 Aligned_cols=48 Identities=10% Similarity=-0.087 Sum_probs=22.4
Q ss_pred HHHHHHHHHH-hhhCCCeEEEEeccH--H-HHHHHHHHHhhcCCeEEEEeCCC
Q psy2046 25 LKKLDEILPD-LKKNGHRVLIFSQFI--F-VLDILGHYMDIRGWRHLRLDGAT 73 (138)
Q Consensus 25 ~~~l~~ll~~-~~~~~~k~iif~~~~--~-~~~~l~~~l~~~g~~~~~i~g~~ 73 (138)
...+.+-+.+ ..+.|-.++++.... . ....+. .+...++....+.+..
T Consensus 23 ~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~-~l~~~~vdgiIi~~~~ 74 (287)
T 3bbl_A 23 LDQFLSSMVREAGAVNYFVLPFPFSEDRSQIDIYRD-LIRSGNVDGFVLSSIN 74 (287)
T ss_dssp HHHHHHHHHHHHHHTTCEEEECCCCSSTTCCHHHHH-HHHTTCCSEEEECSCC
T ss_pred HHHHHHHHHHHHHHcCCEEEEEeCCCchHHHHHHHH-HHHcCCCCEEEEeecC
Confidence 3344443333 344566666654221 1 123333 4445567766666543
No 412
>3fvw_A Putative NAD(P)H-dependent FMN reductase; Q8DWD8_strmu, SMR99, NESG, structural genomics, PSI-2, protein structure initiative; 2.30A {Streptococcus mutans}
Probab=24.05 E-value=45 Score=21.34 Aligned_cols=30 Identities=23% Similarity=0.103 Sum_probs=21.7
Q ss_pred cCccCEEEEeCCCCCc---cchhHHHHHHhhcC
Q psy2046 107 LTAADTVIIHDVDFNP---YNDKQAEDRCHRVG 136 (138)
Q Consensus 107 l~~~~~vi~~~~~~~~---~~~~Q~~gR~~R~G 136 (138)
+..|+.+|+..|.||. ......+.|+.|.|
T Consensus 65 i~~AD~iV~~sP~y~~~~p~~lK~~iD~~~~~~ 97 (192)
T 3fvw_A 65 VQEADAIWIFSPVYNYAIPGPVKNLLDWLSRSL 97 (192)
T ss_dssp HHHCSEEEEECCCBTTBCCHHHHHHHHHHTSCS
T ss_pred HHhCCEEEEECcccccCCCHHHHHHHHHhhccc
Confidence 4577888888888764 45667888888765
No 413
>1aw2_A Triosephosphate isomerase; psychrophilic, vibrio marinus; 2.65A {Moritella marina} SCOP: c.1.1.1 PDB: 1aw1_A
Probab=23.95 E-value=56 Score=22.45 Aligned_cols=12 Identities=8% Similarity=0.147 Sum_probs=9.2
Q ss_pred cCEEEEeCCCCC
Q psy2046 110 ADTVIIHDVDFN 121 (138)
Q Consensus 110 ~~~vi~~~~~~~ 121 (138)
.+.||-|+|.|-
T Consensus 162 ~~vvIAYEPvWA 173 (256)
T 1aw2_A 162 EGAIIAYEPIWA 173 (256)
T ss_dssp TTCEEEECCTTT
T ss_pred CCEEEEECCHHH
Confidence 455788999994
No 414
>3c3k_A Alanine racemase; structural genomics, protein structure initiative, NEW YORK research center for structural genomics, nysgxrc; 1.99A {Actinobacillus succinogenes}
Probab=23.85 E-value=1.6e+02 Score=19.42 Aligned_cols=11 Identities=0% Similarity=-0.432 Sum_probs=5.8
Q ss_pred hcCCeEEEEeC
Q psy2046 61 IRGWRHLRLDG 71 (138)
Q Consensus 61 ~~g~~~~~i~g 71 (138)
..++....+.+
T Consensus 62 ~~~vdgiI~~~ 72 (285)
T 3c3k_A 62 GKMVDGVITMD 72 (285)
T ss_dssp TTCCSEEEECC
T ss_pred hCCCCEEEEeC
Confidence 44555555544
No 415
>3h5i_A Response regulator/sensory box protein/ggdef domain protein; structural genomics, transcription, PSI-2; 1.90A {Carboxydothermus hydrogenoformans z-2901}
Probab=23.82 E-value=1.1e+02 Score=17.54 Aligned_cols=94 Identities=7% Similarity=-0.158 Sum_probs=46.9
Q ss_pred CCCeEEEEeccHHHHHHHHHHHhhcCCeEEEEeCCCCh-HHHHHHHHHHhcCCCceEEEEeccccccc-cCcCccCEEEE
Q psy2046 38 NGHRVLIFSQFIFVLDILGHYMDIRGWRHLRLDGATQV-SSRQELIDEYNRDQDLFAFLLSTKAGGLG-INLTAADTVII 115 (138)
Q Consensus 38 ~~~k~iif~~~~~~~~~l~~~l~~~g~~~~~i~g~~~~-~~R~~~~~~F~~~~~~~vll~~~~~~~~G-l~l~~~~~vi~ 115 (138)
.+-.+..+.+..+.+..+. .......+.++-.++. ..-.+.++..+..+...+++++......- .....+...-+
T Consensus 28 ~g~~v~~~~~~~~a~~~l~---~~~~~dlvi~D~~l~~~~~g~~~~~~l~~~~~~~ii~ls~~~~~~~~~~~~~~g~~~~ 104 (140)
T 3h5i_A 28 YGYTVEIALTGEAAVEKVS---GGWYPDLILMDIELGEGMDGVQTALAIQQISELPVVFLTAHTEPAVVEKIRSVTAYGY 104 (140)
T ss_dssp TTCEEEEESSHHHHHHHHH---TTCCCSEEEEESSCSSSCCHHHHHHHHHHHCCCCEEEEESSSSCCCCGGGGGSCEEEE
T ss_pred cCCEEEEecChHHHHHHHh---cCCCCCEEEEeccCCCCCCHHHHHHHHHhCCCCCEEEEECCCCHHHHHHHHhCCCcEE
Confidence 3556666555444333332 1245567777766542 33344444444323444566554332211 11222233334
Q ss_pred eCCCCCccchhHHHHHHhh
Q psy2046 116 HDVDFNPYNDKQAEDRCHR 134 (138)
Q Consensus 116 ~~~~~~~~~~~Q~~gR~~R 134 (138)
+.-|+++....+++.++.+
T Consensus 105 l~KP~~~~~l~~~i~~~l~ 123 (140)
T 3h5i_A 105 VMKSATEQVLITIVEMALR 123 (140)
T ss_dssp EETTCCHHHHHHHHHHHHH
T ss_pred EeCCCCHHHHHHHHHHHHH
Confidence 4567888888887777643
No 416
>2iks_A DNA-binding transcriptional dual regulator; escherichia coli structural genomics, PSI-2, protein structure initiative; 1.85A {Escherichia coli}
Probab=23.80 E-value=1.6e+02 Score=19.46 Aligned_cols=37 Identities=16% Similarity=0.195 Sum_probs=19.2
Q ss_pred HHHHHHHHHhhcCCeEEEEeCCCChHHHHHHHHHHhc
Q psy2046 51 VLDILGHYMDIRGWRHLRLDGATQVSSRQELIDEYNR 87 (138)
Q Consensus 51 ~~~~l~~~l~~~g~~~~~i~g~~~~~~R~~~~~~F~~ 87 (138)
...-+++.+.+.|+.........+.....+.++.+..
T Consensus 38 ~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~ 74 (293)
T 2iks_A 38 IANYLERQARQRGYQLLIACSEDQPDNEMRCIEHLLQ 74 (293)
T ss_dssp HHHHHHHHHHHTTCEEEEEECTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCEEEEEcCCCCHHHHHHHHHHHHH
Confidence 3445555566666665555544444444445555543
No 417
>3brq_A HTH-type transcriptional regulator ASCG; transcriptional repressor structure escherichia coli, struct genomics, PSI-2; HET: FRU; 2.00A {Escherichia coli}
Probab=23.77 E-value=1.6e+02 Score=19.35 Aligned_cols=10 Identities=0% Similarity=-0.190 Sum_probs=4.5
Q ss_pred cCCeEEEEeC
Q psy2046 62 RGWRHLRLDG 71 (138)
Q Consensus 62 ~g~~~~~i~g 71 (138)
.++....+.+
T Consensus 76 ~~vdgii~~~ 85 (296)
T 3brq_A 76 LRCDAIMIYP 85 (296)
T ss_dssp TTCSEEEEEC
T ss_pred cCCCEEEEec
Confidence 3444444443
No 418
>3p0r_A Azoreductase; structural genomics, center for structural genomics of infec diseases, csgid, oxidoreductase; 1.80A {Bacillus anthracis}
Probab=23.73 E-value=29 Score=22.72 Aligned_cols=31 Identities=26% Similarity=0.233 Sum_probs=21.7
Q ss_pred cCccCEEEEeCCCCC---ccchhHHHHHHhhcCC
Q psy2046 107 LTAADTVIIHDVDFN---PYNDKQAEDRCHRVGQ 137 (138)
Q Consensus 107 l~~~~~vi~~~~~~~---~~~~~Q~~gR~~R~GQ 137 (138)
+..|+.+|+..|-|+ |.....-+.|+.+.|.
T Consensus 90 ~~~aD~iv~~~P~y~~~~p~~lK~~iD~~~~~~~ 123 (211)
T 3p0r_A 90 FLEADKVVFGFPLWNLTIPAVLHTYIDYLNRAGK 123 (211)
T ss_dssp HHHCSEEEEEEECBTTBCCHHHHHHHHHHCCBTT
T ss_pred HHhCCEEEEEcChhcccCCHHHHHHHHHHhccCc
Confidence 446777777777776 5566678888877664
No 419
>2zay_A Response regulator receiver protein; structural genomics, NYSGXRC, target 11006U, protein structure initiative; 2.00A {Desulfuromonas acetoxidans}
Probab=23.52 E-value=1.1e+02 Score=17.56 Aligned_cols=89 Identities=10% Similarity=0.050 Sum_probs=46.6
Q ss_pred CCeEEEEeccHHHHHHHHHHHhhcCCeEEEEeCCCChHHHHHHHHHHhc---CCCceEEEEeccccc----cccCcCccC
Q psy2046 39 GHRVLIFSQFIFVLDILGHYMDIRGWRHLRLDGATQVSSRQELIDEYNR---DQDLFAFLLSTKAGG----LGINLTAAD 111 (138)
Q Consensus 39 ~~k~iif~~~~~~~~~l~~~l~~~g~~~~~i~g~~~~~~R~~~~~~F~~---~~~~~vll~~~~~~~----~Gl~l~~~~ 111 (138)
+-.+..+.+..+.+..+ .......+.++-.++...-.+.++..+. .+...+++++..... ..+.. ++.
T Consensus 32 g~~v~~~~~~~~a~~~l----~~~~~dlii~d~~l~~~~g~~~~~~l~~~~~~~~~pii~ls~~~~~~~~~~~~~~-g~~ 106 (147)
T 2zay_A 32 GFDIIQCGNAIEAVPVA----VKTHPHLIITEANMPKISGMDLFNSLKKNPQTASIPVIALSGRATAKEEAQLLDM-GFI 106 (147)
T ss_dssp TEEEEEESSHHHHHHHH----HHHCCSEEEEESCCSSSCHHHHHHHHHTSTTTTTSCEEEEESSCCHHHHHHHHHH-TCS
T ss_pred CCeEEEeCCHHHHHHHH----HcCCCCEEEEcCCCCCCCHHHHHHHHHcCcccCCCCEEEEeCCCCHHHHHHHHhC-CCC
Confidence 44555554433333333 3345677777776665555666666664 334455555533211 11111 233
Q ss_pred EEEEeCCCCCccchhHHHHHHhh
Q psy2046 112 TVIIHDVDFNPYNDKQAEDRCHR 134 (138)
Q Consensus 112 ~vi~~~~~~~~~~~~Q~~gR~~R 134 (138)
.+ +.-|+++....+++.++.+
T Consensus 107 ~~--l~kp~~~~~L~~~i~~~~~ 127 (147)
T 2zay_A 107 DF--IAKPVNAIRLSARIKRVLK 127 (147)
T ss_dssp EE--EESSCCHHHHHHHHHHHHH
T ss_pred EE--EeCCCCHHHHHHHHHHHHH
Confidence 33 3447788888787777643
No 420
>3eul_A Possible nitrate/nitrite response transcriptional regulatory protein NARL (DNA-binding...; central beta strand flanked by alpha helices; 1.90A {Mycobacterium tuberculosis}
Probab=23.49 E-value=1.2e+02 Score=17.70 Aligned_cols=73 Identities=11% Similarity=-0.050 Sum_probs=37.8
Q ss_pred hhcCCeEEEEeCCCChHHHHHHHHHHhc-CCCceEEEEeccccc----cccCcCccCEEEEeCCCCCccchhHHHHHHhh
Q psy2046 60 DIRGWRHLRLDGATQVSSRQELIDEYNR-DQDLFAFLLSTKAGG----LGINLTAADTVIIHDVDFNPYNDKQAEDRCHR 134 (138)
Q Consensus 60 ~~~g~~~~~i~g~~~~~~R~~~~~~F~~-~~~~~vll~~~~~~~----~Gl~l~~~~~vi~~~~~~~~~~~~Q~~gR~~R 134 (138)
.......+.++-.++...-.+.++..+. .+...+++++..... ..+.. +++. ++.-|.++..+.+++.++.+
T Consensus 58 ~~~~~dlii~d~~l~~~~g~~~~~~l~~~~~~~~ii~~s~~~~~~~~~~~~~~-g~~~--~l~Kp~~~~~l~~~i~~~~~ 134 (152)
T 3eul_A 58 KAHLPDVALLDYRMPGMDGAQVAAAVRSYELPTRVLLISAHDEPAIVYQALQQ-GAAG--FLLKDSTRTEIVKAVLDCAK 134 (152)
T ss_dssp HHHCCSEEEEETTCSSSCHHHHHHHHHHTTCSCEEEEEESCCCHHHHHHHHHT-TCSE--EEETTCCHHHHHHHHHHHHH
T ss_pred HhcCCCEEEEeCCCCCCCHHHHHHHHHhcCCCCeEEEEEccCCHHHHHHHHHc-CCCE--EEecCCCHHHHHHHHHHHHc
Confidence 3345667777766655555556666553 233445555433211 11111 2333 23356777777777777654
Q ss_pred c
Q psy2046 135 V 135 (138)
Q Consensus 135 ~ 135 (138)
-
T Consensus 135 ~ 135 (152)
T 3eul_A 135 G 135 (152)
T ss_dssp C
T ss_pred C
Confidence 3
No 421
>2fep_A Catabolite control protein A; CCPA, transcriptional regulator; HET: SEP; 2.45A {Bacillus subtilis} PDB: 2nzu_G* 1sxh_A 1sxi_A 1sxg_A* 2nzv_G* 2oen_G*
Probab=23.40 E-value=1.7e+02 Score=19.43 Aligned_cols=13 Identities=15% Similarity=-0.008 Sum_probs=6.9
Q ss_pred HhhcCCeEEEEeC
Q psy2046 59 MDIRGWRHLRLDG 71 (138)
Q Consensus 59 l~~~g~~~~~i~g 71 (138)
+...++....+.+
T Consensus 68 l~~~~vdgiIi~~ 80 (289)
T 2fep_A 68 MLGKQVDGIVFMG 80 (289)
T ss_dssp HHHTTCSEEEECC
T ss_pred HHhCCCCEEEEec
Confidence 3345566555554
No 422
>2ht9_A Glutaredoxin-2; thioredoxin fold, iron-sulfur cluster, 2Fe2S, structural genomics, structural genomics consortium, SGC, oxidoreductase; HET: GSH; 1.90A {Homo sapiens} PDB: 2fls_A*
Probab=23.31 E-value=1.3e+02 Score=18.23 Aligned_cols=51 Identities=10% Similarity=-0.081 Sum_probs=33.4
Q ss_pred eEEEEec-cHHHHHHHHHHHhhcCCeEEEEeCCCC---hHHHHHHHHHHhcCCCc
Q psy2046 41 RVLIFSQ-FIFVLDILGHYMDIRGWRHLRLDGATQ---VSSRQELIDEYNRDQDL 91 (138)
Q Consensus 41 k~iif~~-~~~~~~~l~~~l~~~g~~~~~i~g~~~---~~~R~~~~~~F~~~~~~ 91 (138)
++++|+. +...+..+...|...++.+..+.=... +..+..+.+.+.....+
T Consensus 50 ~Vvvf~~~~Cp~C~~~k~~L~~~~i~~~~vdId~~~~~~~~~~~L~~~~g~~tvP 104 (146)
T 2ht9_A 50 CVVIFSKTSCSYCTMAKKLFHDMNVNYKVVELDLLEYGNQFQDALYKMTGERTVP 104 (146)
T ss_dssp SEEEEECTTCHHHHHHHHHHHHHTCCCEEEEGGGCTTHHHHHHHHHHHHSCCCSC
T ss_pred CEEEEECCCChhHHHHHHHHHHcCCCeEEEECccCcCCHHHHHHHHHHhCCCCcC
Confidence 6777764 446788899999999999877766544 33344455566433344
No 423
>3ngf_A AP endonuclease, family 2; structural genomics, seattle structural genomics center for infectious disease, ssgcid, TIM barrel; 1.80A {Brucella melitensis biovar abortus} SCOP: c.1.15.0
Probab=23.28 E-value=1.7e+02 Score=19.36 Aligned_cols=56 Identities=13% Similarity=0.163 Sum_probs=33.7
Q ss_pred HHHHhhhCCCe-EEEEeccHHHHHHHHHHHhhcCCeEEEEeCCC------------ChHHHHHHHHHHh
Q psy2046 31 ILPDLKKNGHR-VLIFSQFIFVLDILGHYMDIRGWRHLRLDGAT------------QVSSRQELIDEYN 86 (138)
Q Consensus 31 ll~~~~~~~~k-~iif~~~~~~~~~l~~~l~~~g~~~~~i~g~~------------~~~~R~~~~~~F~ 86 (138)
.++.+.+.|-. +=++..+......+.+.+++.|+.+..++... .+..|.+.++.++
T Consensus 28 ~l~~~~~~G~~~vEl~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~ 96 (269)
T 3ngf_A 28 RFRLAAEAGFGGVEFLFPYDFDADVIARELKQHNLTQVLFNMPPGDWAAGERGMAAISGREQEFRDNVD 96 (269)
T ss_dssp HHHHHHHTTCSEEECSCCTTSCHHHHHHHHHHTTCEEEEEECCCSCTTTTCCBCTTCTTCHHHHHHHHH
T ss_pred HHHHHHHcCCCEEEecCCccCCHHHHHHHHHHcCCcEEEEecCCCccccCCCCcCCCccHHHHHHHHHH
Confidence 33333444432 22333444567899999999999998877431 2445666666554
No 424
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens}
Probab=23.09 E-value=2.2e+02 Score=20.68 Aligned_cols=88 Identities=9% Similarity=-0.009 Sum_probs=48.8
Q ss_pred ccCchHHHH-HHHHHHhhhC--CCeEEEEeccHHHHHHHHHHHhhc-----CCeEEEEeCCCChHHHHHHHHHHhcCCCc
Q psy2046 20 VESGKLKKL-DEILPDLKKN--GHRVLIFSQFIFVLDILGHYMDIR-----GWRHLRLDGATQVSSRQELIDEYNRDQDL 91 (138)
Q Consensus 20 ~~s~K~~~l-~~ll~~~~~~--~~k~iif~~~~~~~~~l~~~l~~~-----g~~~~~i~g~~~~~~R~~~~~~F~~~~~~ 91 (138)
.-++|.... .-++..+... +.++||.++.+.-+..+...++.. ++......|+....... ....
T Consensus 140 TGsGKT~~~~l~il~~l~~~~~~~~~lil~Pt~~La~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~ 211 (479)
T 3fmp_B 140 SGTGKTAAFVLAMLSQVEPANKYPQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERGQ--------KISE 211 (479)
T ss_dssp SSSSHHHHHHHHHHTTCCTTSCSCCEEEECSSHHHHHHHHHHHHHHHTTSTTCCEEEESTTCCCCTTC--------CCCC
T ss_pred CCCchhHHHHHHHHHHHhhcCCCCcEEEEeChHHHHHHHHHHHHHHHhhCCCceEEEEeCCccccccc--------cCCC
Confidence 446887664 4444443322 238999999998877766555542 45566666655422110 1123
Q ss_pred eEEEEeccccc------cccCcCccCEEEE
Q psy2046 92 FAFLLSTKAGG------LGINLTAADTVII 115 (138)
Q Consensus 92 ~vll~~~~~~~------~Gl~l~~~~~vi~ 115 (138)
.++++++...- ..+++.....+|+
T Consensus 212 ~Ivv~Tp~~l~~~l~~~~~~~~~~~~~iVi 241 (479)
T 3fmp_B 212 QIVIGTPGTVLDWCSKLKFIDPKKIKVFVL 241 (479)
T ss_dssp SEEEECHHHHHHHHTTSCCCCGGGCCEEEE
T ss_pred CEEEECchHHHHHHHhcCCcCcccCCEEEE
Confidence 45666655541 2455666666666
No 425
>2jgq_A Triosephosphate isomerase; glycolysis, pentose shunt, gluconeogenesis, lipid synthesis, fatty acid biosynthesis; HET: QGA; 2.3A {Helicobacter pylori}
Probab=23.03 E-value=1.5e+02 Score=20.03 Aligned_cols=12 Identities=8% Similarity=0.144 Sum_probs=9.4
Q ss_pred cCEEEEeCCCCC
Q psy2046 110 ADTVIIHDVDFN 121 (138)
Q Consensus 110 ~~~vi~~~~~~~ 121 (138)
.+.||-|+|.|-
T Consensus 151 ~~~vIAYEPvWA 162 (233)
T 2jgq_A 151 PNLVVAYEPIWA 162 (233)
T ss_dssp TTEEEEECCGGG
T ss_pred cceEEEEeCHHH
Confidence 467788999883
No 426
>2ioy_A Periplasmic sugar-binding protein; ribose binding protein, thermophilic proteins; HET: RIP; 1.90A {Thermoanaerobacter tengcongensis}
Probab=22.99 E-value=1.7e+02 Score=19.31 Aligned_cols=35 Identities=9% Similarity=0.050 Sum_probs=17.1
Q ss_pred hCCCeEEEEeccH---HHHHHHHHHHhhcCCeEEEEeCC
Q psy2046 37 KNGHRVLIFSQFI---FVLDILGHYMDIRGWRHLRLDGA 72 (138)
Q Consensus 37 ~~~~k~iif~~~~---~~~~~l~~~l~~~g~~~~~i~g~ 72 (138)
+.|-.++++.... .....+...+ ..++....+.+.
T Consensus 29 ~~g~~~~~~~~~~~~~~~~~~i~~l~-~~~vdgiIi~~~ 66 (283)
T 2ioy_A 29 ELGYKIIVEDSQNDSSKELSNVEDLI-QQKVDVLLINPV 66 (283)
T ss_dssp HHTCEEEEEECTTCHHHHHHHHHHHH-HTTCSEEEECCS
T ss_pred hcCcEEEEecCCCCHHHHHHHHHHHH-HcCCCEEEEeCC
Confidence 4466666664322 1223344433 456666666553
No 427
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=22.98 E-value=2.4e+02 Score=21.02 Aligned_cols=92 Identities=12% Similarity=0.012 Sum_probs=51.8
Q ss_pred ccCchHHH-HHHHHHHhhhC------CCeEEEEeccHHHHHHHHHHHhhc--------CCeEEEEeCCCChHHHHHHHHH
Q psy2046 20 VESGKLKK-LDEILPDLKKN------GHRVLIFSQFIFVLDILGHYMDIR--------GWRHLRLDGATQVSSRQELIDE 84 (138)
Q Consensus 20 ~~s~K~~~-l~~ll~~~~~~------~~k~iif~~~~~~~~~l~~~l~~~--------g~~~~~i~g~~~~~~R~~~~~~ 84 (138)
.-++|... +.-++..+... +.++||.+++..-+..+.+.++.. +..+..+.|+.+...... .
T Consensus 120 TGsGKTl~~~lpil~~l~~~~~~~~~~~~~lil~Ptr~La~Q~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~---~ 196 (563)
T 3i5x_A 120 TGTGKTFAFLIPIFQHLINTKFDSQYMVKAVIVAPTRDLALQIEAEVKKIHDMNYGLKKYACVSLVGGTDFRAAMN---K 196 (563)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTSSTTSCCEEEECSSHHHHHHHHHHHHHHHHHCGGGTTSCEEEECTTSCHHHHHH---H
T ss_pred CCCCccHHHHHHHHHHHHhccccccCCeeEEEEcCcHHHHHHHHHHHHHHHhhccccCceeEEEEECCcCHHHHHH---H
Confidence 34678754 33344443332 248999999998877777766652 455778888876544333 3
Q ss_pred HhcCCCceEEEEecccccc------ccCcCccCEEEE
Q psy2046 85 YNRDQDLFAFLLSTKAGGL------GINLTAADTVII 115 (138)
Q Consensus 85 F~~~~~~~vll~~~~~~~~------Gl~l~~~~~vi~ 115 (138)
+... ...++++++...-. ...+.....+|+
T Consensus 197 ~~~~-~~~Iiv~Tp~~l~~~l~~~~~~~~~~~~~lVi 232 (563)
T 3i5x_A 197 MNKL-RPNIVIATPGRLIDVLEKYSNKFFRFVDYKVL 232 (563)
T ss_dssp HHHH-CCSEEEECHHHHHHHHHHHHHHHCTTCCEEEE
T ss_pred HhcC-CCCEEEECcHHHHHHHHhccccccccceEEEE
Confidence 3222 23456666554321 223445666665
No 428
>3ivr_A Putative long-chain-fatty-acid COA ligase; structural genomics, PSI-2, protein S initiative, fatty acid synthesis; HET: GOL; 2.00A {Rhodopseudomonas palustris} SCOP: e.23.1.0
Probab=22.79 E-value=2.3e+02 Score=20.77 Aligned_cols=71 Identities=17% Similarity=0.040 Sum_probs=44.4
Q ss_pred hHHHHHHHHHHh-hhCCCeEEEEeccHHHHHHHHHHHhhcCCeEEEEeCCCChHHHHHHHHHHhcCCCceEEEEec
Q psy2046 24 KLKKLDEILPDL-KKNGHRVLIFSQFIFVLDILGHYMDIRGWRHLRLDGATQVSSRQELIDEYNRDQDLFAFLLST 98 (138)
Q Consensus 24 K~~~l~~ll~~~-~~~~~k~iif~~~~~~~~~l~~~l~~~g~~~~~i~g~~~~~~R~~~~~~F~~~~~~~vll~~~ 98 (138)
+...+...|... ...|+++.|+.+..-..-...-.+-+.|..++.++-..+.++...+++.. .+.+++.+.
T Consensus 40 ~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~~~~~lA~~~~Ga~~vpl~~~~~~~~l~~~l~~~----~~~~vi~~~ 111 (509)
T 3ivr_A 40 RAERLASGLLRDGVHTGDRVAILSQNCSEMIELIGAVALIGAILLPVNYRLNADEIAFVLGDG----APSVVVAGT 111 (509)
T ss_dssp HHHHHHHHHHHTTCCTTCEEEEECCSCHHHHHHHHHHHHTTCEEEECCTTSCHHHHHHHHHHH----CEEEEEECS
T ss_pred HHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHHhCCEEEecCCCCCHHHHHHHHHhc----CceEEEECc
Confidence 344445445433 34578898888765433333333345688999999999988887787765 334455543
No 429
>3n53_A Response regulator receiver modulated diguanylate; diguanylate cyclase, protein structure I II(PSI II), NYSGXRC, structural genomics; 2.20A {Pelobacter carbinolicus} SCOP: c.23.1.0
Probab=22.78 E-value=1.2e+02 Score=17.38 Aligned_cols=91 Identities=14% Similarity=-0.037 Sum_probs=44.1
Q ss_pred CeEEEEeccHHHHHHHHHHHhhcCCeEEEEeCCCChHHHHHHHHHHhcC---CCceEEEEeccccc-cccCcCccCEEEE
Q psy2046 40 HRVLIFSQFIFVLDILGHYMDIRGWRHLRLDGATQVSSRQELIDEYNRD---QDLFAFLLSTKAGG-LGINLTAADTVII 115 (138)
Q Consensus 40 ~k~iif~~~~~~~~~l~~~l~~~g~~~~~i~g~~~~~~R~~~~~~F~~~---~~~~vll~~~~~~~-~Gl~l~~~~~vi~ 115 (138)
..+..+.+..+.++. +.......+.++-.++...-...++..+.. +...+++++..... .-.....+...-+
T Consensus 27 ~~v~~~~~~~~a~~~----~~~~~~dlvi~D~~l~~~~g~~~~~~l~~~~~~~~~~ii~~s~~~~~~~~~~~~~~g~~~~ 102 (140)
T 3n53_A 27 YLVIESKNEKEALEQ----IDHHHPDLVILDMDIIGENSPNLCLKLKRSKGLKNVPLILLFSSEHKEAIVNGLHSGADDY 102 (140)
T ss_dssp SEEEEESSHHHHHHH----HHHHCCSEEEEETTC------CHHHHHHTSTTCTTCCEEEEECC----CTTTTTTCCCSEE
T ss_pred ceEEEeCCHHHHHHH----HhcCCCCEEEEeCCCCCCcHHHHHHHHHcCcccCCCCEEEEecCCCHHHHHHHHhcCCCee
Confidence 455554443333333 344456778888777665556666666643 34455665543221 1111112222223
Q ss_pred eCCCCCccchhHHHHHHhh
Q psy2046 116 HDVDFNPYNDKQAEDRCHR 134 (138)
Q Consensus 116 ~~~~~~~~~~~Q~~gR~~R 134 (138)
+.-|+++....+++.++.+
T Consensus 103 l~KP~~~~~l~~~i~~~~~ 121 (140)
T 3n53_A 103 LTKPFNRNDLLSRIEIHLR 121 (140)
T ss_dssp EESSCCHHHHHHHHHHHHH
T ss_pred eeCCCCHHHHHHHHHHHHh
Confidence 3457888888888877654
No 430
>3rhb_A ATGRXC5, glutaredoxin-C5, chloroplastic; thioredoxin fold, thiol-disulfide oxidoreductase, glutaredox oxidoreductase; HET: GSH; 1.20A {Arabidopsis thaliana} PDB: 3rhc_A* 3fz9_A* 3fza_A*
Probab=22.76 E-value=1.1e+02 Score=17.19 Aligned_cols=33 Identities=15% Similarity=0.167 Sum_probs=25.0
Q ss_pred eEEEEec-cHHHHHHHHHHHhhcCCeEEEEeCCC
Q psy2046 41 RVLIFSQ-FIFVLDILGHYMDIRGWRHLRLDGAT 73 (138)
Q Consensus 41 k~iif~~-~~~~~~~l~~~l~~~g~~~~~i~g~~ 73 (138)
++++|+. +...+..+...|.+.|+++..++=..
T Consensus 20 ~v~vy~~~~Cp~C~~~~~~L~~~~i~~~~~di~~ 53 (113)
T 3rhb_A 20 TVVIYSKTWCSYCTEVKTLFKRLGVQPLVVELDQ 53 (113)
T ss_dssp SEEEEECTTCHHHHHHHHHHHHTTCCCEEEEGGG
T ss_pred CEEEEECCCChhHHHHHHHHHHcCCCCeEEEeec
Confidence 5778764 44668889999999999987776544
No 431
>2fn9_A Ribose ABC transporter, periplasmic ribose-bindin; RBP, ribose binding protein, periplasmic binding protein, thermophilic proteins; 1.40A {Thermotoga maritima} PDB: 2fn8_A*
Probab=22.70 E-value=1.7e+02 Score=19.26 Aligned_cols=37 Identities=11% Similarity=0.116 Sum_probs=18.0
Q ss_pred hhCCCeEEEEeccH--H-HHHHHHHHHhhcCCeEEEEeCCC
Q psy2046 36 KKNGHRVLIFSQFI--F-VLDILGHYMDIRGWRHLRLDGAT 73 (138)
Q Consensus 36 ~~~~~k~iif~~~~--~-~~~~l~~~l~~~g~~~~~i~g~~ 73 (138)
.+.|-.++++.... . ....+.. +...++....+.+..
T Consensus 29 ~~~g~~~~~~~~~~~~~~~~~~~~~-l~~~~vdgiI~~~~~ 68 (290)
T 2fn9_A 29 EQLGYEATIFDSQNDTAKESAHFDA-IIAAGYDAIIFNPTD 68 (290)
T ss_dssp HHTTCEEEEEECTTCHHHHHHHHHH-HHHTTCSEEEECCSC
T ss_pred HHcCCEEEEeCCCCCHHHHHHHHHH-HHHcCCCEEEEecCC
Confidence 44566666654321 1 1233333 334566666665543
No 432
>3gl9_A Response regulator; beta-sheet, surrounded by alpha helices, BOTH sides, signaling protein; HET: BFD; 1.80A {Thermotoga maritima} SCOP: c.23.1.0 PDB: 3dgf_C 3dge_C
Probab=22.47 E-value=1.1e+02 Score=17.08 Aligned_cols=89 Identities=15% Similarity=0.141 Sum_probs=47.0
Q ss_pred CCCeEEEEeccHHHHHHHHHHHhhcCCeEEEEeCCCChHHHHHHHHHHhcC---CCceEEEEeccccc----cccCcCcc
Q psy2046 38 NGHRVLIFSQFIFVLDILGHYMDIRGWRHLRLDGATQVSSRQELIDEYNRD---QDLFAFLLSTKAGG----LGINLTAA 110 (138)
Q Consensus 38 ~~~k~iif~~~~~~~~~l~~~l~~~g~~~~~i~g~~~~~~R~~~~~~F~~~---~~~~vll~~~~~~~----~Gl~l~~~ 110 (138)
.|-.+..+.+..+.+ +.+.......+.++-.++...-.+.++..+.. +...+++++..... ..+.. ++
T Consensus 25 ~g~~v~~~~~~~~al----~~l~~~~~dlvllD~~~p~~~g~~~~~~l~~~~~~~~~pii~~s~~~~~~~~~~~~~~-Ga 99 (122)
T 3gl9_A 25 EGYEVIEAENGQIAL----EKLSEFTPDLIVLXIMMPVMDGFTVLKKLQEKEEWKRIPVIVLTAKGGEEDESLALSL-GA 99 (122)
T ss_dssp TTCEEEEESSHHHHH----HHHTTBCCSEEEECSCCSSSCHHHHHHHHHTSTTTTTSCEEEEESCCSHHHHHHHHHT-TC
T ss_pred CCcEEEEeCCHHHHH----HHHHhcCCCEEEEeccCCCCcHHHHHHHHHhcccccCCCEEEEecCCchHHHHHHHhc-Ch
Confidence 455665544433322 23344566777777777666666677776532 33445555533211 11221 22
Q ss_pred CEEEEeCCCCCccchhHHHHHHh
Q psy2046 111 DTVIIHDVDFNPYNDKQAEDRCH 133 (138)
Q Consensus 111 ~~vi~~~~~~~~~~~~Q~~gR~~ 133 (138)
+. ++.-|+++....+++.++.
T Consensus 100 ~~--~l~KP~~~~~L~~~i~~~l 120 (122)
T 3gl9_A 100 RK--VMRKPFSPSQFIEEVKHLL 120 (122)
T ss_dssp SE--EEESSCCHHHHHHHHHHHH
T ss_pred hh--hccCCCCHHHHHHHHHHHh
Confidence 22 3345777877777776654
No 433
>3gx1_A LIN1832 protein; APC63308.2, structural genomics, protein structure initiative, midwest center for structural genomics, MCSG; 2.30A {Listeria innocua CLIP11262}
Probab=22.29 E-value=1.3e+02 Score=18.08 Aligned_cols=34 Identities=24% Similarity=0.241 Sum_probs=19.7
Q ss_pred CCCeEEEEeccHHHHHHHHHHHhhc-CCeEEEEeCC
Q psy2046 38 NGHRVLIFSQFIFVLDILGHYMDIR-GWRHLRLDGA 72 (138)
Q Consensus 38 ~~~k~iif~~~~~~~~~l~~~l~~~-g~~~~~i~g~ 72 (138)
.++-+||+++- .....+...+... +.++..+.|-
T Consensus 60 ~~~GVLiL~Dm-GSp~n~a~~l~~~~~~~v~vI~gv 94 (130)
T 3gx1_A 60 PVKGVLILSDM-GSLTSFGNILTEELGIRTKTVTMV 94 (130)
T ss_dssp CTTCEEEEECS-GGGGTHHHHHHHHHCCCEEEECSC
T ss_pred CCCCEEEEEeC-CCHHHHHHHHHHhcCCCEEEEeCC
Confidence 35678888876 4444444444332 5566666664
No 434
>1gud_A ALBP, D-allose-binding periplasmic protein; periplasmic binding protein, X-RAY crystallography, hinge bending, conformational change; 1.7A {Escherichia coli} SCOP: c.93.1.1 PDB: 1gub_A 1rpj_A*
Probab=22.12 E-value=1.8e+02 Score=19.28 Aligned_cols=10 Identities=40% Similarity=0.434 Sum_probs=5.5
Q ss_pred hCCCeEEEEe
Q psy2046 37 KNGHRVLIFS 46 (138)
Q Consensus 37 ~~~~k~iif~ 46 (138)
+.|-.++++.
T Consensus 29 ~~g~~~~~~~ 38 (288)
T 1gud_A 29 TLGVSVDIFA 38 (288)
T ss_dssp HHTCCEEEEE
T ss_pred HcCCEEEEeC
Confidence 3455666654
No 435
>3qst_A Triosephosphate isomerase, putative; TIM barrel; 1.75A {Trichomonas vaginalis} PDB: 3qsr_A
Probab=22.08 E-value=2e+02 Score=19.72 Aligned_cols=18 Identities=22% Similarity=0.189 Sum_probs=11.5
Q ss_pred ccCcCc-cCEEEEeCCCCC
Q psy2046 104 GINLTA-ADTVIIHDVDFN 121 (138)
Q Consensus 104 Gl~l~~-~~~vi~~~~~~~ 121 (138)
|++... .+.||-|+|.|-
T Consensus 155 ~~~~~~~~~~vIAYEPvWA 173 (255)
T 3qst_A 155 AIPAGKWDDVVIAYEPIWA 173 (255)
T ss_dssp GSCTTCGGGEEEEECCGGG
T ss_pred cCCHHHhCCEEEEECCHHH
Confidence 444433 456788999993
No 436
>3hs3_A Ribose operon repressor; PSI-II, NYSGXRC, periplasmic binding protein, structural genomics, protein structure initiative; 1.60A {Lactobacillus acidophilus}
Probab=22.05 E-value=1.8e+02 Score=19.18 Aligned_cols=47 Identities=11% Similarity=0.145 Sum_probs=29.6
Q ss_pred HHHHHHHHHHhhcCCe-EEEEeCCCChHHHHHHHHHHhcCCCceEEEE
Q psy2046 50 FVLDILGHYMDIRGWR-HLRLDGATQVSSRQELIDEYNRDQDLFAFLL 96 (138)
Q Consensus 50 ~~~~~l~~~l~~~g~~-~~~i~g~~~~~~R~~~~~~F~~~~~~~vll~ 96 (138)
....-+++.+.+.|+. ........+.....+.++.+......-+++.
T Consensus 27 ~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~ 74 (277)
T 3hs3_A 27 QIIDGIQEVIQKEGYTALISFSTNSDVKKYQNAIINFENNNVDGIITS 74 (277)
T ss_dssp HHHHHHHHHHHHTTCEEEEEECSSCCHHHHHHHHHHHHHTTCSEEEEE
T ss_pred HHHHHHHHHHHHCCCCEEEEEeCCCChHHHHHHHHHHHhCCCCEEEEc
Confidence 4456677777788888 6666666666656666777765533333333
No 437
>3ucx_A Short chain dehydrogenase; ssgcid, seattle structural genomics center for infectious DI dehydrogenase, oxidoreductase; HET: 1PE; 1.85A {Mycobacterium smegmatis} SCOP: c.2.1.0
Probab=21.73 E-value=1.8e+02 Score=19.20 Aligned_cols=53 Identities=15% Similarity=0.194 Sum_probs=37.0
Q ss_pred HHHhhhCCCeEEEEeccHHHHHHHHHHHhhcCCeEEEEeCCCChH-HHHHHHHH
Q psy2046 32 LPDLKKNGHRVLIFSQFIFVLDILGHYMDIRGWRHLRLDGATQVS-SRQELIDE 84 (138)
Q Consensus 32 l~~~~~~~~k~iif~~~~~~~~~l~~~l~~~g~~~~~i~g~~~~~-~R~~~~~~ 84 (138)
...+.+.|.++++.......++.+.+.+...+..+..+.++.+.. +-.+.+++
T Consensus 28 a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~ 81 (264)
T 3ucx_A 28 ARRCAEQGADLVLAARTVERLEDVAKQVTDTGRRALSVGTDITDDAQVAHLVDE 81 (264)
T ss_dssp HHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHH
T ss_pred HHHHHHCcCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHH
Confidence 344466788998888888888888888887777777888876543 33334443
No 438
>3tha_A Tryptophan synthase alpha chain; structural genomics, center for structural genomics of infec diseases, csgid, lyase; 2.37A {Campylobacter jejuni}
Probab=21.73 E-value=2e+02 Score=19.63 Aligned_cols=62 Identities=13% Similarity=0.201 Sum_probs=28.7
Q ss_pred chHHHHHHHHHHhhhCCCeEEEEeccHHH----HHHHHHHHhhcCCeEEEEeCCCChHHHHHHHHHHh
Q psy2046 23 GKLKKLDEILPDLKKNGHRVLIFSQFIFV----LDILGHYMDIRGWRHLRLDGATQVSSRQELIDEYN 86 (138)
Q Consensus 23 ~K~~~l~~ll~~~~~~~~k~iif~~~~~~----~~~l~~~l~~~g~~~~~i~g~~~~~~R~~~~~~F~ 86 (138)
-.+..+.++++++..+ -.+++++.+.-. .+...+.+.+.|+.- .+-.+++.++.....+..+
T Consensus 73 ~~~~~~~~~~~~~r~~-~Pivlm~Y~N~i~~~G~e~F~~~~~~aGvdG-~IipDLP~eE~~~~~~~~~ 138 (252)
T 3tha_A 73 VDIHSVFELLARIKTK-KALVFMVYYNLIFSYGLEKFVKKAKSLGICA-LIVPELSFEESDDLIKECE 138 (252)
T ss_dssp CCHHHHHHHHHHCCCS-SEEEEECCHHHHHHHCHHHHHHHHHHTTEEE-EECTTCCGGGCHHHHHHHH
T ss_pred CCHHHHHHHHHHHhcC-CCEEEEeccCHHHHhhHHHHHHHHHHcCCCE-EEeCCCCHHHHHHHHHHHH
Confidence 3455666666665433 355555544422 233444444444442 2333344444444444444
No 439
>3clk_A Transcription regulator; 11017J, PSI-II, NYSGXRC, dimer, structural genomics, protein structure initiative; 2.08A {Lactobacillus plantarum WCFS1}
Probab=21.70 E-value=1.8e+02 Score=19.22 Aligned_cols=48 Identities=17% Similarity=0.014 Sum_probs=19.6
Q ss_pred HHHHHHHHHHh-hhCCCeEEEE-eccHH---HHHHHHHHHhhcCCeEEEEeCCC
Q psy2046 25 LKKLDEILPDL-KKNGHRVLIF-SQFIF---VLDILGHYMDIRGWRHLRLDGAT 73 (138)
Q Consensus 25 ~~~l~~ll~~~-~~~~~k~iif-~~~~~---~~~~l~~~l~~~g~~~~~i~g~~ 73 (138)
...+.+-+.+. .+.|-.++++ ..... ....+.. +...++....+.+..
T Consensus 23 ~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~~-l~~~~vdgiI~~~~~ 75 (290)
T 3clk_A 23 AQQILDGIQEEAHKNGYNLIIVYSGSADPEEQKHALLT-AIERPVMGILLLSIA 75 (290)
T ss_dssp HHHHHHHHHHHHHTTTCEEEEEC----------CHHHH-HHSSCCSEEEEESCC
T ss_pred HHHHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHH-HHhcCCCEEEEeccc
Confidence 33444444333 3445566665 32111 1122333 334566666665543
No 440
>3k9c_A Transcriptional regulator, LACI family protein; PSI-II, 11026W, structural genomics, PR structure initiative; 2.14A {Rhodococcus jostii}
Probab=21.70 E-value=1.8e+02 Score=19.24 Aligned_cols=37 Identities=11% Similarity=-0.030 Sum_probs=15.9
Q ss_pred hhCCCeEEEEeccHH--HHHHHHHHHhhcCCeEEEEeCCC
Q psy2046 36 KKNGHRVLIFSQFIF--VLDILGHYMDIRGWRHLRLDGAT 73 (138)
Q Consensus 36 ~~~~~k~iif~~~~~--~~~~l~~~l~~~g~~~~~i~g~~ 73 (138)
.+.|-.++++..... ....+.. |...++.-..+.+..
T Consensus 38 ~~~g~~~~~~~~~~~~~~~~~~~~-l~~~~vdgiIi~~~~ 76 (289)
T 3k9c_A 38 TRRGYDVMLSAVAPSRAEKVAVQA-LMRERCEAAILLGTR 76 (289)
T ss_dssp HHTTCEEEEEEEBTTBCHHHHHHH-HTTTTEEEEEEETCC
T ss_pred HHCCCEEEEEeCCCCHHHHHHHHH-HHhCCCCEEEEECCC
Confidence 344555555543321 2223332 333455555555543
No 441
>3h8q_A Thioredoxin reductase 3; oxidoreductase, structural genomics, structural genomics CON SGC, developmental protein, differentiation; 2.21A {Homo sapiens} SCOP: c.47.1.0
Probab=21.69 E-value=1.2e+02 Score=17.24 Aligned_cols=58 Identities=17% Similarity=0.157 Sum_probs=35.8
Q ss_pred CeEEEEecc-HHHHHHHHHHHhhcCCeEEEEeCCC--ChHHHHHHHHHHhcCCCceEEEEe
Q psy2046 40 HRVLIFSQF-IFVLDILGHYMDIRGWRHLRLDGAT--QVSSRQELIDEYNRDQDLFAFLLS 97 (138)
Q Consensus 40 ~k~iif~~~-~~~~~~l~~~l~~~g~~~~~i~g~~--~~~~R~~~~~~F~~~~~~~vll~~ 97 (138)
.+++||+.. ...+......|...|+++..+.=.. ...+..+.+.+.......-.+++.
T Consensus 17 ~~v~vy~~~~Cp~C~~ak~~L~~~~i~~~~~dvd~~~~~~~~~~~l~~~~g~~tvP~vfi~ 77 (114)
T 3h8q_A 17 SRVVIFSKSYCPHSTRVKELFSSLGVECNVLELDQVDDGARVQEVLSEITNQKTVPNIFVN 77 (114)
T ss_dssp CSEEEEECTTCHHHHHHHHHHHHTTCCCEEEETTTSTTHHHHHHHHHHHHSCCSSCEEEET
T ss_pred CCEEEEEcCCCCcHHHHHHHHHHcCCCcEEEEecCCCChHHHHHHHHHHhCCCccCEEEEC
Confidence 478888853 4668889999999999988877654 223443445444333333334443
No 442
>2rgy_A Transcriptional regulator, LACI family; 11011J, NYSGXRC, transctiptional regulator, SUG binding protein, structural genomics, PSI-2; 2.05A {Burkholderia phymatum}
Probab=21.68 E-value=1.8e+02 Score=19.22 Aligned_cols=37 Identities=5% Similarity=-0.050 Sum_probs=17.2
Q ss_pred hhCCCeEEEEeccH---HHHH---HHHHHHhhcCCeEEEEeCCC
Q psy2046 36 KKNGHRVLIFSQFI---FVLD---ILGHYMDIRGWRHLRLDGAT 73 (138)
Q Consensus 36 ~~~~~k~iif~~~~---~~~~---~l~~~l~~~g~~~~~i~g~~ 73 (138)
.+.|-.++++.... .... .+ +.+...++....+.+..
T Consensus 35 ~~~g~~~~~~~~~~~~~~~~~~~~~~-~~l~~~~vdgiIi~~~~ 77 (290)
T 2rgy_A 35 RAVHRHVVVATGCGESTPREQALEAV-RFLIGRDCDGVVVISHD 77 (290)
T ss_dssp HHTTCEEEEECCCSSSCHHHHHHHHH-HHHHHTTCSEEEECCSS
T ss_pred HHCCCEEEEEeCCCchhhhhhHHHHH-HHHHhcCccEEEEecCC
Confidence 34566666654321 1122 33 33344566666665543
No 443
>1t0b_A THUA-like protein; trehalose metabolism, NCS symmetry, structural genomics, PSI, protein structure initiative; 1.70A {Geobacillus stearothermophilus} SCOP: c.23.16.6
Probab=21.62 E-value=1.5e+02 Score=20.00 Aligned_cols=9 Identities=33% Similarity=0.881 Sum_probs=5.0
Q ss_pred eEEEEeccH
Q psy2046 41 RVLIFSQFI 49 (138)
Q Consensus 41 k~iif~~~~ 49 (138)
+++||+.+.
T Consensus 9 ~vlv~~~~~ 17 (252)
T 1t0b_A 9 RVVVWNEFR 17 (252)
T ss_dssp EEEEEECCC
T ss_pred EEEEECCcc
Confidence 555555544
No 444
>3p45_A Caspase-6; protease, huntington'S disease, physio PH, competitive inhibition, hydrolase; 2.53A {Homo sapiens}
Probab=21.59 E-value=1.7e+02 Score=18.83 Aligned_cols=46 Identities=17% Similarity=0.052 Sum_probs=36.7
Q ss_pred eEEEEeccH--------------HHHHHHHHHHhhcCCeEEEEeCCCChHHHHHHHHHHhc
Q psy2046 41 RVLIFSQFI--------------FVLDILGHYMDIRGWRHLRLDGATQVSSRQELIDEYNR 87 (138)
Q Consensus 41 k~iif~~~~--------------~~~~~l~~~l~~~g~~~~~i~g~~~~~~R~~~~~~F~~ 87 (138)
..|||.+.. .+.+.|...|+..|+.+..+ -..+..+-.+.+++|..
T Consensus 46 ~aLIinn~~F~~~~~l~~R~Gt~~D~~~L~~~F~~LGF~V~~~-~dlt~~em~~~l~~~~~ 105 (179)
T 3p45_A 46 IALIFNHERFFWHLTLPERRGTCADRDNLTRRFSDLGFEVKCF-NDLKAEELLLKIHEVST 105 (179)
T ss_dssp EEEEEECCSCCGGGCCCCCTTHHHHHHHHHHHHHHTTCEEEEE-ESCCHHHHHHHHHHHHT
T ss_pred EEEEEeCcccCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEE-eCCCHHHHHHHHHHHhh
Confidence 578887742 57889999999999996555 56888888888998874
No 445
>3uoa_B Mucosa-associated lymphoid tissue lymphoma transl protein 1; paracaspase, lymphoma, NF-KB signalling, caspase fold, immun fold, hydrolase-hydrolase inhibitor complex; 1.75A {Homo sapiens} PDB: 3uo8_B 3v55_A 3v4l_A* 3v4o_A*
Probab=21.50 E-value=2.4e+02 Score=20.61 Aligned_cols=38 Identities=11% Similarity=0.093 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHhhcCCeEEEEeCCCChHHHHHHHHHHhc
Q psy2046 49 IFVLDILGHYMDIRGWRHLRLDGATQVSSRQELIDEYNR 87 (138)
Q Consensus 49 ~~~~~~l~~~l~~~g~~~~~i~g~~~~~~R~~~~~~F~~ 87 (138)
..+++.+++.|+..|+.+..+. ..+.++-.+.+++|..
T Consensus 26 ~~DA~~L~~~L~~lGF~V~~l~-DlT~~eI~~aL~~f~~ 63 (390)
T 3uoa_B 26 LVDVYELTNLLRQLDFKVVSLL-DLTEYEMRNAVDEFLL 63 (390)
T ss_dssp HHHHHHHHHHHHHTTCEEEEEE-SCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCeEEEee-cCCHHHHHHHHHHHHh
Confidence 4678889999999999866554 4666777777888763
No 446
>1o5x_A TIM, triosephosphate isomerase; 2- phosphoglycerate, META-phosphate, catalytic LOOP6; HET: 2PG; 1.10A {Plasmodium falciparum} SCOP: c.1.1.1 PDB: 1lzo_A 1m7o_A* 1m7p_A* 1lyx_A* 1ydv_A 2vfi_A* 3psw_A 3psv_A 3pwa_A 2vfh_A* 2vff_A 2vfg_A* 1vga_A 1woa_A* 1wob_A 3pvf_A 3py2_A 2vfd_A 2vfe_A*
Probab=21.46 E-value=1.8e+02 Score=19.78 Aligned_cols=12 Identities=0% Similarity=0.249 Sum_probs=9.5
Q ss_pred cCEEEEeCCCCC
Q psy2046 110 ADTVIIHDVDFN 121 (138)
Q Consensus 110 ~~~vi~~~~~~~ 121 (138)
.+.||-|+|.|-
T Consensus 158 ~~~vIAYEPvWA 169 (248)
T 1o5x_A 158 DNVILVYEPLWA 169 (248)
T ss_dssp TSEEEEECCGGG
T ss_pred cCEEEEECCHHH
Confidence 467788999884
No 447
>1pjr_A PCRA; DNA repair, DNA replication, SOS response, helicase, ATP- binding, DNA-binding; 2.50A {Geobacillus stearothermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1qhg_A* 3pjr_A* 2pjr_A* 1qhh_B* 1qhh_D* 1qhh_A* 1qhh_C* 2pjr_B*
Probab=21.43 E-value=2.3e+02 Score=22.23 Aligned_cols=54 Identities=6% Similarity=0.016 Sum_probs=36.1
Q ss_pred HHHHHHHHHhhh-CC---CeEEEEeccHHHHHHHHHHHhhcCCeEEEEeCCCChHHHHH
Q psy2046 26 KKLDEILPDLKK-NG---HRVLIFSQFIFVLDILGHYMDIRGWRHLRLDGATQVSSRQE 80 (138)
Q Consensus 26 ~~l~~ll~~~~~-~~---~k~iif~~~~~~~~~l~~~l~~~g~~~~~i~g~~~~~~R~~ 80 (138)
..+.+.|..+.. .+ ..+-|.+........+++.|.+.|++|... |+.+--+|..
T Consensus 334 ~~va~~I~~l~~~~g~~~~diAIL~R~~~~~~~le~~L~~~gIPy~~~-g~~~f~~~~e 391 (724)
T 1pjr_A 334 QFVAGRIREAVERGERRYRDFAVLYRTNAQSRVMEEMLLKANIPYQIV-GGLKFYDRKE 391 (724)
T ss_dssp HHHHHHHHHHHTTTSCCGGGEEEEESSGGGHHHHHHHHHHTTCCEEEE-TSCCGGGSHH
T ss_pred HHHHHHHHHHHHhcCCChhheeeeeecchhHHHHHHHHHHcCCCEEEe-CCcchhhCHH
Confidence 345555555543 22 356677777777899999999999998665 4555555444
No 448
>3s6d_A Putative triosephosphate isomerase; seattle structural genomics center for infectious disease, S pathogenic fungus, eukaryote; 2.20A {Coccidioides immitis RS}
Probab=21.32 E-value=2.2e+02 Score=20.13 Aligned_cols=11 Identities=9% Similarity=0.135 Sum_probs=9.2
Q ss_pred cCEEEEeCCCC
Q psy2046 110 ADTVIIHDVDF 120 (138)
Q Consensus 110 ~~~vi~~~~~~ 120 (138)
.+.||-|+|.|
T Consensus 216 ~~vVIAYEPVW 226 (310)
T 3s6d_A 216 APVIFAYEPVW 226 (310)
T ss_dssp SCEEEEECCGG
T ss_pred cceEEEECChh
Confidence 56788899999
No 449
>3rkr_A Short chain oxidoreductase; rossmann fold; HET: NAP; 2.42A {Uncultured bacterium BIO5}
Probab=21.28 E-value=1.8e+02 Score=19.11 Aligned_cols=44 Identities=14% Similarity=0.017 Sum_probs=32.4
Q ss_pred HHHhhhCCCeEEEEeccHHHHHHHHHHHhhcCCeEEEEeCCCCh
Q psy2046 32 LPDLKKNGHRVLIFSQFIFVLDILGHYMDIRGWRHLRLDGATQV 75 (138)
Q Consensus 32 l~~~~~~~~k~iif~~~~~~~~~l~~~l~~~g~~~~~i~g~~~~ 75 (138)
.+.+.+.|.++++.......++.+.+.+...+..+..+.++.+.
T Consensus 46 a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~ 89 (262)
T 3rkr_A 46 ARKLGSLGARVVLTARDVEKLRAVEREIVAAGGEAESHACDLSH 89 (262)
T ss_dssp HHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCEEEEEECCTTC
T ss_pred HHHHHHCCCEEEEEECCHHHHHHHHHHHHHhCCceeEEEecCCC
Confidence 34445678888888887777788888887777777777777653
No 450
>3c1r_A Glutaredoxin-1; oxidized form, oxidoreductase, cytoplasm, electron transport, redox-active center, transport; HET: MES; 2.00A {Saccharomyces cerevisiae} PDB: 3c1s_A* 2jac_A*
Probab=21.21 E-value=1.3e+02 Score=17.33 Aligned_cols=51 Identities=8% Similarity=-0.044 Sum_probs=33.1
Q ss_pred eEEEEecc-HHHHHHH-HHHHhhcC---CeEEEEeCCCCh---HHHHHHHHHHhcCCCc
Q psy2046 41 RVLIFSQF-IFVLDIL-GHYMDIRG---WRHLRLDGATQV---SSRQELIDEYNRDQDL 91 (138)
Q Consensus 41 k~iif~~~-~~~~~~l-~~~l~~~g---~~~~~i~g~~~~---~~R~~~~~~F~~~~~~ 91 (138)
++++|+.. ...+..+ ..+|...+ +++..++-...+ +.+..+.+.+....-+
T Consensus 26 ~Vvvf~~~~Cp~C~~alk~~L~~~~~~~i~~~~vdid~~~~~~~~~~~l~~~~g~~tvP 84 (118)
T 3c1r_A 26 EIFVASKTYCPYCHAALNTLFEKLKVPRSKVLVLQLNDMKEGADIQAALYEINGQRTVP 84 (118)
T ss_dssp SEEEEECSSCHHHHHHHHHHHTTSCCCGGGEEEEEGGGSTTHHHHHHHHHHHHSCCSSC
T ss_pred cEEEEEcCCCcCHHHHHHHHHHHcCCCCCCeEEEECccCCChHHHHHHHHHHhCCCCcC
Confidence 68788753 4567777 99999999 888888765543 2444555555433334
No 451
>1qtn_A Caspase-8; apoptosis, dithiane-DIOL, caspase, cysteine-protease, hydrol hydrolase inhibitor complex; 1.20A {Homo sapiens} SCOP: c.17.1.1 PDB: 3kjn_A* 3kjq_A* 2y1l_A 2c2z_A 1qdu_A* 1f9e_A*
Probab=21.18 E-value=1.6e+02 Score=18.47 Aligned_cols=37 Identities=11% Similarity=0.100 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHhhcCCeEEEEeCCCChHHHHHHHHHHh
Q psy2046 49 IFVLDILGHYMDIRGWRHLRLDGATQVSSRQELIDEYN 86 (138)
Q Consensus 49 ~~~~~~l~~~l~~~g~~~~~i~g~~~~~~R~~~~~~F~ 86 (138)
..+.+.|...|+..|+.+ .++-..+..+-.+.+++|.
T Consensus 54 ~~D~~~L~~~f~~LgF~V-~~~~dlt~~em~~~l~~~~ 90 (164)
T 1qtn_A 54 HLDAGALTTTFEELHFEI-KPHDDCTVEQIYEILKIYQ 90 (164)
T ss_dssp HHHHHHHHHHHHHTTCEE-EEEESCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCEE-EEecCCCHHHHHHHHHHHH
Confidence 466788999999999996 5556678888888999986
No 452
>2kok_A Arsenate reductase; brucellosis, zoonotic, oxidoreductase, S genomics, seattle structural genomics center for infectious ssgcid; NMR {Brucella abortus}
Probab=21.16 E-value=1.3e+02 Score=17.45 Aligned_cols=30 Identities=13% Similarity=0.032 Sum_probs=19.0
Q ss_pred eEEEEeccH-HHHHHHHHHHhhcCCeEEEEe
Q psy2046 41 RVLIFSQFI-FVLDILGHYMDIRGWRHLRLD 70 (138)
Q Consensus 41 k~iif~~~~-~~~~~l~~~l~~~g~~~~~i~ 70 (138)
++.||+... ..+.....+|+++|++|..++
T Consensus 6 ~i~iY~~~~C~~C~ka~~~L~~~gi~y~~~d 36 (120)
T 2kok_A 6 SVTIYGIKNCDTMKKARIWLEDHGIDYTFHD 36 (120)
T ss_dssp CEEEEECSSCHHHHHHHHHHHHHTCCEEEEE
T ss_pred EEEEEECCCChHHHHHHHHHHHcCCcEEEEe
Confidence 355665433 566777777777777766554
No 453
>1kq3_A Glycerol dehydrogenase; structural genomics, joint center FO structural genomics, JCSG, protein structure initiative, PS oxidoreductase; 1.50A {Thermotoga maritima} SCOP: e.22.1.2
Probab=21.12 E-value=47 Score=23.86 Aligned_cols=62 Identities=13% Similarity=0.096 Sum_probs=31.1
Q ss_pred chHHHHHHHHHHhhhCCCeEEEEeccHHH----HHHHHHHHhhcCCeEEEEeCCCChHHHHHHHHHHhc
Q psy2046 23 GKLKKLDEILPDLKKNGHRVLIFSQFIFV----LDILGHYMDIRGWRHLRLDGATQVSSRQELIDEYNR 87 (138)
Q Consensus 23 ~K~~~l~~ll~~~~~~~~k~iif~~~~~~----~~~l~~~l~~~g~~~~~i~g~~~~~~R~~~~~~F~~ 87 (138)
+-+..+-+.++.+ ++|++|.++.... .+.+.+.|+..|+.+..+.|..+.+.-.+..+.++.
T Consensus 28 g~l~~l~~~l~~~---g~~~liVtd~~~~~~~~~~~v~~~L~~~g~~~~~~~ge~~~~~v~~~~~~~~~ 93 (376)
T 1kq3_A 28 GAINILEEELSRF---GERAFVVIDDFVDKNVLGENFFSSFTKVRVNKQIFGGECSDEEIERLSGLVEE 93 (376)
T ss_dssp TGGGGHHHHHHTT---CSEEEEEECHHHHHHTTCTTGGGGCSSSEEEEEECCSSCBHHHHHHHHTTCCT
T ss_pred CHHHHHHHHHHHc---CCeEEEEECccHHhhccHHHHHHHHHHcCCeEEEeCCCCCHHHHHHHHHHHhc
Confidence 3344455555432 4677777753211 233444454455555556665554455555555544
No 454
>3od5_A Caspase-6; caspase domain, apoptotic protease, hydrolase-hydrolase INHI complex; 1.60A {Homo sapiens} SCOP: c.17.1.0 PDB: 3k7e_A 3s70_A 3v6m_A 3v6l_A 3nr2_A 4fxo_A 2wdp_A 3nkf_A 3s8e_A 4ejf_A 3qnw_A* 3p4u_A* 3p45_B 3qnw_B* 3p4u_B*
Probab=21.10 E-value=2.1e+02 Score=19.66 Aligned_cols=46 Identities=17% Similarity=0.019 Sum_probs=36.4
Q ss_pred eEEEEecc--------------HHHHHHHHHHHhhcCCeEEEEeCCCChHHHHHHHHHHhc
Q psy2046 41 RVLIFSQF--------------IFVLDILGHYMDIRGWRHLRLDGATQVSSRQELIDEYNR 87 (138)
Q Consensus 41 k~iif~~~--------------~~~~~~l~~~l~~~g~~~~~i~g~~~~~~R~~~~~~F~~ 87 (138)
-.|||.+. ..+.+.|...|+..|+.+. ++-..+..+-.+.+++|..
T Consensus 23 ~aLIInn~~F~~~~~l~~R~Gt~~D~~~L~~~f~~LGF~V~-~~~dlt~~em~~~l~~~~~ 82 (278)
T 3od5_A 23 IALIFNHERFFWHLTLPERRGTCADRDNLTRRFSDLGFEVK-CFNDLKAEELLLKIHEVST 82 (278)
T ss_dssp EEEEEECCCCCGGGCCCCCTTHHHHHHHHHHHHHHTTCEEE-EEESCCHHHHHHHHHHHHH
T ss_pred EEEEEeccccCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEE-EecCCCHHHHHHHHHHHHh
Confidence 47888774 2678899999999999965 5556888888888888874
No 455
>2rjo_A Twin-arginine translocation pathway signal protei; PSI-2, NYSGXRC, twin arginine translocation pathway signal P structural genomics; HET: GAL; 2.05A {Burkholderia phytofirmans}
Probab=21.02 E-value=2e+02 Score=19.49 Aligned_cols=59 Identities=7% Similarity=0.013 Sum_probs=26.5
Q ss_pred hhCCCeEEEEeccH---HHHHHHHHHHhhcC--CeEEEEeCCCChHHHHHHHHHHhcCCCceEEEEe
Q psy2046 36 KKNGHRVLIFSQFI---FVLDILGHYMDIRG--WRHLRLDGATQVSSRQELIDEYNRDQDLFAFLLS 97 (138)
Q Consensus 36 ~~~~~k~iif~~~~---~~~~~l~~~l~~~g--~~~~~i~g~~~~~~R~~~~~~F~~~~~~~vll~~ 97 (138)
.+.|-.++++.... .....+...+ ..+ +..+.+.+... ..-...++.......+ ++++.
T Consensus 32 ~~~g~~l~~~~~~~~~~~~~~~i~~l~-~~~~~vdgiIi~~~~~-~~~~~~~~~~~~~~iP-vV~~~ 95 (332)
T 2rjo_A 32 KSVGLPYVPLTTEGSSEKGIADIRALL-QKTGGNLVLNVDPNDS-ADARVIVEACSKAGAY-VTTIW 95 (332)
T ss_dssp HHHTCCEEEEECTTCHHHHHHHHHHHH-HHTTTCEEEEECCSSH-HHHHHHHHHHHHHTCE-EEEES
T ss_pred HHcCCEEEEecCCCCHHHHHHHHHHHH-HCCCCCCEEEEeCCCH-HHHHHHHHHHHHCCCe-EEEEC
Confidence 34466666664322 1223343333 445 77666655432 2222345555433333 34443
No 456
>1dcf_A ETR1 protein; beta-alpha five sandwich, transferase; 2.50A {Arabidopsis thaliana} SCOP: c.23.1.2
Probab=21.01 E-value=1.3e+02 Score=17.11 Aligned_cols=18 Identities=6% Similarity=-0.226 Sum_probs=12.1
Q ss_pred CCCCCccchhHHHHHHhh
Q psy2046 117 DVDFNPYNDKQAEDRCHR 134 (138)
Q Consensus 117 ~~~~~~~~~~Q~~gR~~R 134 (138)
.-|+++....+++.++.+
T Consensus 111 ~KP~~~~~L~~~l~~~~~ 128 (136)
T 1dcf_A 111 LKPVSLDNIRDVLSDLLE 128 (136)
T ss_dssp ESSCCHHHHHHHHHHHHS
T ss_pred ECCCCHHHHHHHHHHHhc
Confidence 446677777777777654
No 457
>2qai_A V-type ATP synthase subunit F; VATF_pyrfu, ATPF, NESG, structural genomics, PSI-2, protein structure initiative; 2.40A {Pyrococcus furiosus}
Probab=20.99 E-value=1.4e+02 Score=17.56 Aligned_cols=45 Identities=13% Similarity=0.146 Sum_probs=30.1
Q ss_pred HHhhcCCeEEEE-eC-CCChHHHHHHHHHHhcCCCceEEEEeccccc
Q psy2046 58 YMDIRGWRHLRL-DG-ATQVSSRQELIDEYNRDQDLFAFLLSTKAGG 102 (138)
Q Consensus 58 ~l~~~g~~~~~i-~g-~~~~~~R~~~~~~F~~~~~~~vll~~~~~~~ 102 (138)
-|+-.|+....+ .. +++.++-.+.+++|-.++..-+++++-..+.
T Consensus 14 GFrLaGi~~~~v~~~~~t~~ee~~~~~~~l~~~~digIIlIte~ia~ 60 (111)
T 2qai_A 14 GFRLAGVHEAYEYDESLESVERARNKLRELLERDDVGIILITERLAQ 60 (111)
T ss_dssp HHHHHTCSEEEECCSSHHHHHHHHHHHHHHHTCTTEEEEEEEHHHHH
T ss_pred HHHHcCCceEEEecCCCCCHHHHHHHHHHHhhCCCeEEEEEcHHHHh
Confidence 344567876666 33 3555777778888887777777887765543
No 458
>3hcw_A Maltose operon transcriptional repressor; RNA-binding, PSI-2, NYSGXRC, STRU genomics, protein structure initiative; 2.20A {Staphylococcus aureus subsp}
Probab=20.73 E-value=1.9e+02 Score=19.17 Aligned_cols=66 Identities=5% Similarity=-0.048 Sum_probs=39.6
Q ss_pred HHHHHHHHhhcCCeEEEEeCCCChHHHHHHHHHHhc----CCCceEEEEecccc---------ccccCcCccCEEEEeC
Q psy2046 52 LDILGHYMDIRGWRHLRLDGATQVSSRQELIDEYNR----DQDLFAFLLSTKAG---------GLGINLTAADTVIIHD 117 (138)
Q Consensus 52 ~~~l~~~l~~~g~~~~~i~g~~~~~~R~~~~~~F~~----~~~~~vll~~~~~~---------~~Gl~l~~~~~vi~~~ 117 (138)
..-..+.+++.|+++..+.+..+.+.-.+.++++-. ++.+..+++..+.. ..|+.+|.-=.|+-+|
T Consensus 150 ~~Gf~~al~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ai~~~~d~~A~g~~~al~~~g~~vP~di~vig~D 228 (295)
T 3hcw_A 150 IQGFETVASQFNLDYQIIETSNEREVILNYMQNLHTRLKDPNIKQAIISLDAMLHLAILSVLYELNIEIPKDVMTATFN 228 (295)
T ss_dssp HHHHHHHHHHTTCEEEEEEECSCHHHHHHHHHHHHHHHTCTTSCEEEEESSHHHHHHHHHHHHHTTCCTTTTEEEEEEC
T ss_pred HHHHHHHHHHcCCCeeEEeccCCHHHHHHHHHHHHhhcccCCCCcEEEECChHHHHHHHHHHHHcCCCCCCceEEEEeC
Confidence 445667778889988777777766655555554432 22455566655542 2677777544455554
No 459
>1t3k_A Arath CDC25, dual-specificity tyrosine phosphatase; cell cycle, phosphorylation, plant, hydrolase; NMR {Arabidopsis thaliana} SCOP: c.46.1.1
Probab=20.64 E-value=1.1e+02 Score=18.55 Aligned_cols=38 Identities=13% Similarity=0.049 Sum_probs=22.8
Q ss_pred hCCCeEEEEec-cH----HHHHHHHH----HHhhcCC-eEEEEeCCCC
Q psy2046 37 KNGHRVLIFSQ-FI----FVLDILGH----YMDIRGW-RHLRLDGATQ 74 (138)
Q Consensus 37 ~~~~k~iif~~-~~----~~~~~l~~----~l~~~g~-~~~~i~g~~~ 74 (138)
..++++|+||. .- .....|.. .|+..|+ ++..+.|+..
T Consensus 83 ~~~~~iVvyC~~~G~rs~~aa~~L~~~l~~~L~~~G~~~V~~L~GG~~ 130 (152)
T 1t3k_A 83 KDKDTLVFHSALSQVRGPTCARRLVNYLDEKKEDTGIKNIMILERGFN 130 (152)
T ss_dssp CSCCEEEESSSCCSSSHHHHHHHHHHHHHHSSSCCCSSEEEEESSTTH
T ss_pred CCCCEEEEEcCCCCcchHHHHHHHHHHHHHHHHhcCCCcEEEEcCCHH
Confidence 35667888887 32 22333332 2355788 5778889875
No 460
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=20.63 E-value=2.5e+02 Score=20.35 Aligned_cols=45 Identities=18% Similarity=0.232 Sum_probs=29.5
Q ss_pred HHHHHHHHHhhhCCCeEEEEeccHH---------H-HHHHHHHHhhcCCeEEEEe
Q psy2046 26 KKLDEILPDLKKNGHRVLIFSQFIF---------V-LDILGHYMDIRGWRHLRLD 70 (138)
Q Consensus 26 ~~l~~ll~~~~~~~~k~iif~~~~~---------~-~~~l~~~l~~~g~~~~~i~ 70 (138)
.-+.++|..+.+.|-++.|.++... . ...+...|+..|+.+..+.
T Consensus 90 pgv~e~L~~L~~~G~~l~IvTN~~gi~~g~~~~~~~~~~~~~~l~~lgl~fd~i~ 144 (416)
T 3zvl_A 90 PEIPKKLQELAAEGYKLVIFTNQMGIGRGKLPAEVFKGKVEAVLEKLGVPFQVLV 144 (416)
T ss_dssp TTHHHHHHHHHHTTCEEEEEEECHHHHTTSSCHHHHHHHHHHHHHHHTSCCEEEE
T ss_pred ccHHHHHHHHHHCCCeEEEEeCCccccCCCCCHHHHHHHHHHHHHHcCCCEEEEE
Confidence 3456667777788999999999541 1 2346677777776544443
No 461
>1b9b_A TIM, protein (triosephosphate isomerase); thermophilic; 2.85A {Thermotoga maritima} SCOP: c.1.1.1
Probab=20.44 E-value=78 Score=21.75 Aligned_cols=12 Identities=17% Similarity=0.141 Sum_probs=9.5
Q ss_pred cCEEEEeCCCCC
Q psy2046 110 ADTVIIHDVDFN 121 (138)
Q Consensus 110 ~~~vi~~~~~~~ 121 (138)
.+.||-|+|.|-
T Consensus 161 ~~~vIAYEPvWA 172 (255)
T 1b9b_A 161 KRVVIAYEPVWA 172 (255)
T ss_dssp TTCEEEECCGGG
T ss_pred CCEEEEECCHHH
Confidence 467888999984
No 462
>3gv0_A Transcriptional regulator, LACI family; transcription regulator, PSI-II, structural genomics structure initiative; 2.35A {Agrobacterium tumefaciens str}
Probab=20.41 E-value=1.7e+02 Score=19.31 Aligned_cols=70 Identities=0% Similarity=-0.119 Sum_probs=34.2
Q ss_pred hHHHHHHHHHHh-hhCCCeEEEEeccH--HHHHHHHHHHhhcCCeEEEEeCCCChHHHHHHHHHHhcCCCceEEEEe
Q psy2046 24 KLKKLDEILPDL-KKNGHRVLIFSQFI--FVLDILGHYMDIRGWRHLRLDGATQVSSRQELIDEYNRDQDLFAFLLS 97 (138)
Q Consensus 24 K~~~l~~ll~~~-~~~~~k~iif~~~~--~~~~~l~~~l~~~g~~~~~i~g~~~~~~R~~~~~~F~~~~~~~vll~~ 97 (138)
=...+.+-+.+. .+.|-.++++.... .....+...+...++..+.+.+..... ..++.+.....+ ++++.
T Consensus 24 ~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~~~~---~~~~~l~~~~iP-vV~i~ 96 (288)
T 3gv0_A 24 FTSQMVFGITEVLSTTQYHLVVTPHIHAKDSMVPIRYILETGSADGVIISKIEPND---PRVRFMTERNMP-FVTHG 96 (288)
T ss_dssp HHHHHHHHHHHHHTTSSCEEEECCBSSGGGTTHHHHHHHHHTCCSEEEEESCCTTC---HHHHHHHHTTCC-EEEES
T ss_pred HHHHHHHHHHHHHHHcCCEEEEecCCcchhHHHHHHHHHHcCCccEEEEecCCCCc---HHHHHHhhCCCC-EEEEC
Confidence 344444444433 34466666654321 223345555666677766676644322 234555444344 34443
No 463
>3gaf_A 7-alpha-hydroxysteroid dehydrogenase; seattle structural genomics center for infectious disease, ssgcid, oxidoreductase, structural genomics; 2.20A {Brucella melitensis}
Probab=20.37 E-value=1.9e+02 Score=18.99 Aligned_cols=44 Identities=11% Similarity=0.059 Sum_probs=33.0
Q ss_pred HHHhhhCCCeEEEEeccHHHHHHHHHHHhhcCCeEEEEeCCCCh
Q psy2046 32 LPDLKKNGHRVLIFSQFIFVLDILGHYMDIRGWRHLRLDGATQV 75 (138)
Q Consensus 32 l~~~~~~~~k~iif~~~~~~~~~l~~~l~~~g~~~~~i~g~~~~ 75 (138)
.+.+.+.|.++++........+.+.+.+...+-.+..+.++.+.
T Consensus 29 a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~d 72 (256)
T 3gaf_A 29 AGTFAKAGASVVVTDLKSEGAEAVAAAIRQAGGKAIGLECNVTD 72 (256)
T ss_dssp HHHHHHHTCEEEEEESSHHHHHHHHHHHHHTTCCEEEEECCTTC
T ss_pred HHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEECCCCC
Confidence 33445668889888888887888888887777777778887654
No 464
>3qiv_A Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR protein] reductase; structural genomics; 2.25A {Mycobacterium avium subsp}
Probab=20.34 E-value=1.9e+02 Score=18.82 Aligned_cols=54 Identities=11% Similarity=0.106 Sum_probs=37.0
Q ss_pred HHHHhhhCCCeEEEEeccHHHHHHHHHHHhhcCCeEEEEeCCCCh-HHHHHHHHH
Q psy2046 31 ILPDLKKNGHRVLIFSQFIFVLDILGHYMDIRGWRHLRLDGATQV-SSRQELIDE 84 (138)
Q Consensus 31 ll~~~~~~~~k~iif~~~~~~~~~l~~~l~~~g~~~~~i~g~~~~-~~R~~~~~~ 84 (138)
+.+.+.+.|.++++.......++.+.+.+...+-.+..+.++.+. ++-.+.++.
T Consensus 25 ~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~ 79 (253)
T 3qiv_A 25 YAEALAREGAAVVVADINAEAAEAVAKQIVADGGTAISVAVDVSDPESAKAMADR 79 (253)
T ss_dssp HHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCEEEEEECCTTSHHHHHHHHHH
T ss_pred HHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHH
Confidence 344456678889888888888888888887777777777777654 333333333
No 465
>3th6_A Triosephosphate isomerase; alpha/beta barrel, embryogenesis, glycolysis; 2.40A {Rhipicephalus microplus}
Probab=20.31 E-value=2.1e+02 Score=19.46 Aligned_cols=12 Identities=17% Similarity=0.205 Sum_probs=9.5
Q ss_pred cCEEEEeCCCCC
Q psy2046 110 ADTVIIHDVDFN 121 (138)
Q Consensus 110 ~~~vi~~~~~~~ 121 (138)
.+.||-|+|.|-
T Consensus 158 ~~~vIAYEPvWA 169 (249)
T 3th6_A 158 SKVVIAYEPVWA 169 (249)
T ss_dssp GGEEEEECCTTT
T ss_pred cCEEEEECCcch
Confidence 466788999994
No 466
>2fpr_A Histidine biosynthesis bifunctional protein HISB; histidinola phosphate phosphatase, bifunctional enzyme structural genomics; 1.70A {Escherichia coli} SCOP: c.108.1.19 PDB: 2fps_A 2fpu_A* 2fpx_A 2fpw_A*
Probab=20.23 E-value=1.6e+02 Score=18.08 Aligned_cols=40 Identities=13% Similarity=0.150 Sum_probs=26.7
Q ss_pred HHHHHHHHhhhCCCeEEEEeccH-------------HHHHHHHHHHhhcCCeE
Q psy2046 27 KLDEILPDLKKNGHRVLIFSQFI-------------FVLDILGHYMDIRGWRH 66 (138)
Q Consensus 27 ~l~~ll~~~~~~~~k~iif~~~~-------------~~~~~l~~~l~~~g~~~ 66 (138)
-+.++|..+.+.|-++.|+++.. .....+...|+..|+.+
T Consensus 46 g~~e~L~~L~~~G~~l~i~Tn~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~f 98 (176)
T 2fpr_A 46 GVIPQLLKLQKAGYKLVMITNQDGLGTQSFPQADFDGPHNLMMQIFTSQGVQF 98 (176)
T ss_dssp THHHHHHHHHHTTEEEEEEEECTTTTBTTBCHHHHHHHHHHHHHHHHHTTCCE
T ss_pred cHHHHHHHHHHCCCEEEEEECCccccccccchHhhhhhHHHHHHHHHHcCCCe
Confidence 45556666677788999999862 13355666777777764
No 467
>2vxn_A Triosephosphate isomerase; fatty acid biosynthesis, transition state analogue, glycolysis, pentose shunt, gluconeogenesis, TIM, glycosome; HET: PGH PGA; 0.82A {Leishmania mexicana} PDB: 1if2_A* 1qds_A 1n55_A* 2y61_A 2y62_A 2y63_A 1amk_A 1tpf_A 1iig_A 1ag1_O* 1iih_A 1tpd_A 1trd_A* 2v5l_A 4tim_A* 5tim_A 6tim_A*
Probab=20.17 E-value=1.6e+02 Score=20.09 Aligned_cols=12 Identities=8% Similarity=0.144 Sum_probs=9.4
Q ss_pred cCEEEEeCCCCC
Q psy2046 110 ADTVIIHDVDFN 121 (138)
Q Consensus 110 ~~~vi~~~~~~~ 121 (138)
.+.||-|+|.|-
T Consensus 161 ~~~vIAYEPvWA 172 (251)
T 2vxn_A 161 NQVVLAYEPVWA 172 (251)
T ss_dssp GGEEEEECCGGG
T ss_pred CCEEEEECCHHH
Confidence 467788999984
No 468
>1mvo_A PHOP response regulator; phosphate regulon, transcriptional regulatory protein, alpha/beta doubly wound fold, phosphorylation; 1.60A {Bacillus subtilis} SCOP: c.23.1.1
Probab=20.13 E-value=1.3e+02 Score=16.95 Aligned_cols=90 Identities=18% Similarity=0.132 Sum_probs=45.5
Q ss_pred CCCeEEEEeccHHHHHHHHHHHhhcCCeEEEEeCCCChHHHHHHHHHHhcC-CCceEEEEeccccc----cccCcCccCE
Q psy2046 38 NGHRVLIFSQFIFVLDILGHYMDIRGWRHLRLDGATQVSSRQELIDEYNRD-QDLFAFLLSTKAGG----LGINLTAADT 112 (138)
Q Consensus 38 ~~~k~iif~~~~~~~~~l~~~l~~~g~~~~~i~g~~~~~~R~~~~~~F~~~-~~~~vll~~~~~~~----~Gl~l~~~~~ 112 (138)
.+..+..+.+..+.+. .+.......+.++-.++...-.+.++..+.. +...+++++..... ..+. .++..
T Consensus 26 ~g~~v~~~~~~~~a~~----~~~~~~~dlvl~D~~l~~~~g~~~~~~l~~~~~~~~ii~~s~~~~~~~~~~~~~-~g~~~ 100 (136)
T 1mvo_A 26 SGYDVITASDGEEALK----KAETEKPDLIVLDVMLPKLDGIEVCKQLRQQKLMFPILMLTAKDEEFDKVLGLE-LGADD 100 (136)
T ss_dssp TTCEEEEESSHHHHHH----HHHHHCCSEEEEESSCSSSCHHHHHHHHHHTTCCCCEEEEECTTCCCCHHHHHH-TTCCE
T ss_pred CCcEEEEecCHHHHHH----HHhhcCCCEEEEecCCCCCCHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHh-CCCCE
Confidence 3555554444333333 3334456777777666544445556665532 33445555433211 1111 12333
Q ss_pred EEEeCCCCCccchhHHHHHHhh
Q psy2046 113 VIIHDVDFNPYNDKQAEDRCHR 134 (138)
Q Consensus 113 vi~~~~~~~~~~~~Q~~gR~~R 134 (138)
++.-|+++....+++.++.+
T Consensus 101 --~l~KP~~~~~l~~~i~~~~~ 120 (136)
T 1mvo_A 101 --YMTKPFSPREVNARVKAILR 120 (136)
T ss_dssp --EEESSCCHHHHHHHHHHHHH
T ss_pred --EEECCCCHHHHHHHHHHHHH
Confidence 23457788888888777654
No 469
>3fni_A Putative diflavin flavoprotein A 3; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium; 2.30A {Nostoc SP} PDB: 2klb_A
Probab=20.07 E-value=1.6e+02 Score=18.00 Aligned_cols=15 Identities=7% Similarity=-0.095 Sum_probs=6.5
Q ss_pred HHHHHHHHhhcCCeE
Q psy2046 52 LDILGHYMDIRGWRH 66 (138)
Q Consensus 52 ~~~l~~~l~~~g~~~ 66 (138)
++.+++.|...|+.+
T Consensus 22 A~~ia~~l~~~g~~v 36 (159)
T 3fni_A 22 AQAIINGITKTGVGV 36 (159)
T ss_dssp HHHHHHHHHHTTCEE
T ss_pred HHHHHHHHHHCCCeE
Confidence 344444444444443
Done!