RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy2046
(138 letters)
>d1z3ix1 c.37.1.19 (X:390-735) Rad54-like, Rad54L {Zebra fish (Danio
rerio) [TaxId: 7955]}
Length = 346
Score = 73.1 bits (178), Expect = 7e-17
Identities = 44/134 (32%), Positives = 69/134 (51%), Gaps = 2/134 (1%)
Query: 7 LDCAKYKVPDDLVVESGKLKKLDEILPDLK-KNGHRVLIFSQFIFVLDILGHYMDIRGWR 65
L Y SGK+ LD IL + +V++ S + LD+ R +
Sbjct: 85 LFPQNYSTKAVEPQLSGKMLVLDYILAMTRTTTSDKVVLVSNYTQTLDLFEKLCRNRRYL 144
Query: 66 HLRLDGATQVSSRQELIDEYNRDQDL-FAFLLSTKAGGLGINLTAADTVIIHDVDFNPYN 124
++RLDG + R ++++ +N F F+LS+KAGG G+NL A+ +++ D D+NP N
Sbjct: 145 YVRLDGTMSIKKRAKIVERFNNPSSPEFIFMLSSKAGGCGLNLIGANRLVMFDPDWNPAN 204
Query: 125 DKQAEDRCHRVGQT 138
D+QA R R GQ
Sbjct: 205 DEQAMARVWRDGQK 218
>d1wp9a2 c.37.1.19 (A:201-486) putative ATP-dependent RNA helicase
PF2015 {Pyrococcus furiosus [TaxId: 2261]}
Length = 286
Score = 64.5 bits (156), Expect = 7e-14
Identities = 25/137 (18%), Positives = 56/137 (40%), Gaps = 11/137 (8%)
Query: 10 AKYKVPDDLVVESGKLKKLDEILPDL--KKNGHRVLIFSQFIFVLDILGHYMDIRGWRHL 67
+ ++ ++ K+ KL EI+ + +K ++++F+ + + + + G +
Sbjct: 130 SLLVQAKEIGLDHPKMDKLKEIIREQLQRKQNSKIIVFTNYRETAKKIVNELVKDGIKAK 189
Query: 68 RLDGATQVSSRQEL-IDEYNRDQDLFA-----FLLSTKAGGLGINLTAADTVIIHDVDFN 121
R G + + L E D FA L++T G G+++ D V+ ++ +
Sbjct: 190 RFVGQASKENDRGLSQREQKLILDEFARGEFNVLVATSVGEEGLDVPEVDLVVFYEPVPS 249
Query: 122 PYNDKQAEDRCHRVGQT 138
Q R R G+
Sbjct: 250 AIRSIQ---RRGRTGRH 263
>d1z5za1 c.37.1.19 (A:663-906) Helicase of the SNF2/Rad54 hamily
{Sulfolobus solfataricus [TaxId: 2287]}
Length = 244
Score = 49.7 bits (117), Expect = 9e-09
Identities = 37/114 (32%), Positives = 62/114 (54%), Gaps = 1/114 (0%)
Query: 26 KKLDEILPDLKKNGHRVLIFSQFIFVLDILGHYMDIRGW-RHLRLDGATQVSSRQELIDE 84
+ EI+ + G ++ IF+QF+ + I+ + ++ L G R ++I +
Sbjct: 72 IRTMEIIEEALDEGDKIAIFTQFVDMGKIIRNIIEKELNTEVPFLYGELSKKERDDIISK 131
Query: 85 YNRDQDLFAFLLSTKAGGLGINLTAADTVIIHDVDFNPYNDKQAEDRCHRVGQT 138
+ + + +LS KAGG GINLT+A+ VI D +NP + QA DR +R+GQT
Sbjct: 132 FQNNPSVKFIVLSVKAGGFGINLTSANRVIHFDRWWNPAVEDQATDRVYRIGQT 185
>d2fwra1 c.37.1.19 (A:257-456) DNA repair protein RAD25
{Archaeoglobus fulgidus [TaxId: 2234]}
Length = 200
Score = 45.3 bits (106), Expect = 3e-07
Identities = 21/117 (17%), Positives = 49/117 (41%), Gaps = 9/117 (7%)
Query: 22 SGKLKKLDEILPDLKKNGHRVLIFSQFIFVLDILGHYMDIRGWRHLRLDGATQVSSRQEL 81
K++KL EIL + +++IF++ ++ + I + T R+E+
Sbjct: 78 KNKIRKLREILE--RHRKDKIIIFTRHNELVYRISKVFLIPA-----ITHRTSREEREEI 130
Query: 82 IDEYNRDQDLFAFLLSTKAGGLGINLTAADTVIIHDVDFNPYNDKQAEDRCHRVGQT 138
++ + + F ++S++ GI++ A+ +I + Q R R +
Sbjct: 131 LEGFRTGR--FRAIVSSQVLDEGIDVPDANVGVIMSGSGSAREYIQRLGRILRPSKG 185
>d1hv8a2 c.37.1.19 (A:211-365) Putative DEAD box RNA helicase
{Archaeon Methanococcus jannaschii [TaxId: 2190]}
Length = 155
Score = 33.8 bits (76), Expect = 0.002
Identities = 22/120 (18%), Positives = 47/120 (39%), Gaps = 2/120 (1%)
Query: 19 VVESGKLKKLDEILPDLKKNGHRVLIFSQFIFVLDILGHYMDIRGWRHLRLDGATQVSSR 78
VE + ++ + + LK L+F + L + G++ + G S R
Sbjct: 8 YVEVNENERFEALCRLLKNKEFYGLVFCKTKRDTKELASMLRDIGFKAGAIHGDLSQSQR 67
Query: 79 QELIDEYNRDQDLFAFLLSTKAGGLGINLTAADTVIIHDVDFNPYNDKQAEDRCHRVGQT 138
+++I + + + +T GI++ + VI + + NP + R R G+
Sbjct: 68 EKVIRLFKQKKIRILI--ATDVMSRGIDVNDLNCVINYHLPQNPESYMHRIGRTGRAGKK 125
>d1a1va2 c.37.1.14 (A:326-624) HCV helicase domain {Human hepatitis
C virus (HCV), different isolates [TaxId: 11103]}
Length = 299
Score = 33.0 bits (75), Expect = 0.008
Identities = 21/128 (16%), Positives = 36/128 (28%), Gaps = 17/128 (13%)
Query: 22 SGKLKKLDEILPDLKKNGHRVLIFSQFIFVLDILGHYMDIRGWRHLRLDGATQVSSR-QE 80
+G++ + +P G R LIF D L + G + VS
Sbjct: 19 TGEIPFYGKAIPLEVIKGGRHLIFCHSKKKCDELAAKLVALGINAVAYYRGLDVSVIPTS 78
Query: 81 LIDEYNRDQDLFAF-------LLSTKA---GGLGINLTAADTVIIHDVDFNPYNDKQAED 130
L ++ + +L T+ + P + A
Sbjct: 79 GDVVVVATDALMTGFTGDFDSVIDCNTCVTQTVDFSLDPTFTIETTTL---P---QDAVS 132
Query: 131 RCHRVGQT 138
R R G+T
Sbjct: 133 RTQRRGRT 140
>d1jr6a_ c.37.1.14 (A:) HCV helicase domain {Human hepatitis C virus
(HCV), different isolates [TaxId: 11103]}
Length = 138
Score = 27.8 bits (61), Expect = 0.33
Identities = 20/117 (17%), Positives = 36/117 (30%), Gaps = 12/117 (10%)
Query: 22 SGKLKKLDEILPDLKKNGHRVLIFSQFIFVLDILGHYMDIRGWRHLRLDGATQVSSRQEL 81
+G++ + +P G R LIF D L + G +
Sbjct: 18 TGEIPFYGKAIPLEVIKGGRHLIFCHSKKKCDELAAKLVALGINAVAYYRGLD------- 70
Query: 82 IDEYNRDQDLFAFLLSTKAGGLGINLTAADTVIIHDVDFNPYNDKQAEDRCHRVGQT 138
+ +++T A G D + D + + + A R R G+T
Sbjct: 71 --VSVIPTNGDVVVVATDALMTGFT---GDFDSVIDCNTSDGKPQDAVSRTQRRGRT 122
>d2j0sa2 c.37.1.19 (A:244-411) Probable ATP-dependent RNA helicase
DDX48 {Human (Homo sapiens) [TaxId: 9606]}
Length = 168
Score = 25.7 bits (55), Expect = 1.9
Identities = 21/117 (17%), Positives = 39/117 (33%), Gaps = 4/117 (3%)
Query: 21 ESGKLKKLDEILPDLKKNGHRVLIFSQFIFVLDILGHYMDIRGWRHLRLDGATQVSSRQE 80
E K L ++ L + +IF +D L M + + G R+
Sbjct: 18 EEWKFDTLCDLYDTLTIT--QAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERES 75
Query: 81 LIDEYNRDQDLFAFLLSTKAGGLGINLTAADTVIIHDVDFNPYNDKQAEDRCHRVGQ 137
++ E+ ST G+++ +I +D+ N R R G+
Sbjct: 76 IMKEFRSGASRVLI--STDVWARGLDVPQVSLIINYDLPNNRELYIHRIGRSGRYGR 130
>d1nm2a2 d.58.23.1 (A:134-195) Probable ACP-binding domain of
malonyl-CoA ACP transacylase {Streptomyces coelicolor
A3(2) [TaxId: 100226]}
Length = 62
Score = 23.2 bits (50), Expect = 4.8
Identities = 7/40 (17%), Positives = 17/40 (42%), Gaps = 1/40 (2%)
Query: 4 KQTLDCAKYKVPDDLVVESGKLKKLDEILPDLKKNGHRVL 43
+ L A +V +G +++L + D + +V+
Sbjct: 21 RLGLTPANVNGAGQIVA-AGTMEQLAALNEDKPEGVRKVV 59
>d2p6ra4 c.37.1.19 (A:203-403) Hel308 helicase {Archaeoglobus
fulgidus [TaxId: 2234]}
Length = 201
Score = 24.5 bits (52), Expect = 4.8
Identities = 6/29 (20%), Positives = 13/29 (44%)
Query: 17 DLVVESGKLKKLDEILPDLKKNGHRVLIF 45
D + + K +E++ + VL+F
Sbjct: 18 DGAFSTSRRVKFEELVEECVAENGGVLVF 46
>d1wy6a1 a.118.20.1 (A:7-167) Hypothetical protein ST1625 {Archaeon
Sulfolobus tokodaii [TaxId: 111955]}
Length = 161
Score = 24.1 bits (52), Expect = 5.4
Identities = 10/23 (43%), Positives = 15/23 (65%)
Query: 17 DLVVESGKLKKLDEILPDLKKNG 39
D++V GK KL+EI ++ KN
Sbjct: 94 DILVIQGKRDKLEEIGREILKNN 116
>d2hu7a1 b.69.7.2 (A:9-321) Acylamino-acid-releasing enzyme,
N-terminal donain {Aeropyrum pernix [TaxId: 56636]}
Length = 313
Score = 24.5 bits (53), Expect = 5.7
Identities = 9/41 (21%), Positives = 15/41 (36%), Gaps = 14/41 (34%)
Query: 19 VVESGKLKKLDEILPDLKKNGHRVLIFSQFIFVLDILGHYM 59
++ G L++L + F FV DI G +
Sbjct: 130 ALDGGGLRELARLPG--------------FGFVSDIRGDLI 156
>d1ihua2 c.37.1.10 (A:308-586) Arsenite-translocating ATPase ArsA
{Escherichia coli [TaxId: 562]}
Length = 279
Score = 24.2 bits (51), Expect = 7.3
Identities = 4/19 (21%), Positives = 11/19 (57%)
Query: 28 LDEILPDLKKNGHRVLIFS 46
L ++ D+ +N H +++
Sbjct: 8 LSALVDDIARNEHGLIMLM 26
>d1gkub2 c.37.1.16 (B:251-498) Helicase-like "domain" of reverse
gyrase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}
Length = 248
Score = 24.0 bits (51), Expect = 8.3
Identities = 11/125 (8%), Positives = 34/125 (27%), Gaps = 22/125 (17%)
Query: 17 DLVVESGKLKKLDEILPDLKKNGHRVLIFSQFIFVLDILGHYMDIRGWRHLRLDGATQVS 76
D+ V + L IL +K G +I+++ + + + + +
Sbjct: 6 DVAVNDESISTLSSIL---EKLGTGGIIYARTGEEAEEIYESL------KNKFRIGIVTA 56
Query: 77 SRQELIDEYNRDQDLFAFLLSTKAGGLGINLTAADT---VIIHDVDFNPYNDKQAEDRCH 133
+++ +++ + + G L L + +
Sbjct: 57 TKKGDYEKFVEGEIDHLIGTAHYYGTLVRGLDLPERIRFAVFVGCPSFR----------V 106
Query: 134 RVGQT 138
+
Sbjct: 107 TIEDI 111
>d1wpxa1 c.69.1.5 (A:1-421) Serine carboxypeptidase II {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 421
Score = 24.0 bits (51), Expect = 8.3
Identities = 7/51 (13%), Positives = 21/51 (41%), Gaps = 4/51 (7%)
Query: 30 EILPDLKKNGHRVLIFSQFIFVLDILGHYMDIRGW-RHLRLDGATQVSSRQ 79
+ DL +L+++ D + +++ + W L + +S++
Sbjct: 318 TAVTDLLNQDLPILVYAGD---KDFICNWLGNKAWTDVLPWKYDEEFASQK 365
>d1rrma_ e.22.1.2 (A:) Lactaldehyde reductase FucO {Escherichia
coli [TaxId: 562]}
Length = 385
Score = 23.8 bits (50), Expect = 8.6
Identities = 5/34 (14%), Positives = 11/34 (32%), Gaps = 3/34 (8%)
Query: 18 LVVESGKLKKL---DEILPDLKKNGHRVLIFSQF 48
L+V L + ++ + G I+
Sbjct: 34 LIVTDKTLVQCGVVAKVTDKMDAAGLAWAIYDGV 67
>d1ac5a_ c.69.1.5 (A:) Serine carboxypeptidase II {Baker's yeast
(Saccharomyces cerevisiae), kex1(delta)p [TaxId: 4932]}
Length = 483
Score = 24.0 bits (51), Expect = 9.4
Identities = 5/17 (29%), Positives = 12/17 (70%)
Query: 30 EILPDLKKNGHRVLIFS 46
+LP L ++G +++F+
Sbjct: 363 HLLPGLLESGIEIVLFN 379
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.323 0.141 0.418
Gapped
Lambda K H
0.267 0.0455 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 543,995
Number of extensions: 24716
Number of successful extensions: 116
Number of sequences better than 10.0: 1
Number of HSP's gapped: 114
Number of HSP's successfully gapped: 23
Length of query: 138
Length of database: 2,407,596
Length adjustment: 76
Effective length of query: 62
Effective length of database: 1,364,116
Effective search space: 84575192
Effective search space used: 84575192
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 48 (22.9 bits)