Query psy2047
Match_columns 233
No_of_seqs 123 out of 1043
Neff 9.7
Searched_HMMs 46136
Date Fri Aug 16 22:53:53 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy2047.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/2047hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0389|consensus 100.0 7.8E-39 1.7E-43 277.8 17.6 210 20-233 607-816 (941)
2 KOG0385|consensus 100.0 1.3E-36 2.8E-41 263.3 14.0 180 1-233 347-526 (971)
3 KOG0387|consensus 100.0 2.3E-31 5.1E-36 231.6 13.9 181 1-233 395-586 (923)
4 KOG0384|consensus 100.0 2E-31 4.3E-36 240.5 10.9 182 3-233 557-738 (1373)
5 PLN03142 Probable chromatin-re 100.0 1.9E-29 4.2E-34 232.2 14.5 178 1-233 349-526 (1033)
6 KOG0392|consensus 100.0 4.2E-29 9.1E-34 225.2 14.3 194 1-233 1158-1382(1549)
7 KOG1015|consensus 100.0 1.3E-28 2.9E-33 217.4 13.3 232 1-233 879-1203(1567)
8 KOG0386|consensus 99.9 4E-28 8.6E-33 215.8 9.0 184 2-233 575-765 (1157)
9 KOG0391|consensus 99.9 9.2E-28 2E-32 215.4 10.9 107 2-111 796-906 (1958)
10 KOG0388|consensus 99.9 4.6E-27 9.9E-32 203.0 12.4 221 1-233 753-1083(1185)
11 KOG1002|consensus 99.9 2E-24 4.2E-29 180.6 8.6 222 7-233 411-677 (791)
12 KOG0383|consensus 99.9 5.7E-23 1.2E-27 181.1 9.2 163 20-233 507-669 (696)
13 KOG4439|consensus 99.9 1.4E-22 3E-27 175.3 10.3 202 24-233 537-785 (901)
14 KOG0390|consensus 99.9 4.4E-22 9.6E-27 177.0 12.9 192 1-233 434-634 (776)
15 COG0553 HepA Superfamily II DN 99.9 5.2E-22 1.1E-26 185.3 12.4 198 1-233 531-750 (866)
16 KOG1016|consensus 99.8 1.4E-20 3E-25 164.5 8.2 230 1-233 492-776 (1387)
17 KOG1001|consensus 99.7 1E-16 2.2E-21 143.1 11.6 223 6-233 317-578 (674)
18 PF00176 SNF2_N: SNF2 family N 99.5 2.9E-14 6.2E-19 117.6 8.4 105 3-110 194-299 (299)
19 KOG1000|consensus 99.5 1.8E-13 3.9E-18 115.4 10.2 154 3-233 370-531 (689)
20 PF11496 HDA2-3: Class II hist 99.3 1.1E-11 2.3E-16 101.5 8.2 133 53-230 4-153 (297)
21 PRK04914 ATP-dependent helicas 98.9 8.8E-09 1.9E-13 96.1 9.4 57 175-233 476-533 (956)
22 PRK13766 Hef nuclease; Provisi 97.6 0.0003 6.5E-09 65.8 8.9 52 176-227 345-398 (773)
23 TIGR00603 rad25 DNA repair hel 97.1 0.0021 4.6E-08 59.0 8.0 52 177-233 479-530 (732)
24 KOG0331|consensus 96.9 0.0011 2.4E-08 58.1 4.5 59 175-233 321-380 (519)
25 cd00079 HELICc Helicase superf 96.9 0.0018 3.8E-08 46.1 4.8 55 178-232 12-66 (131)
26 COG1061 SSL2 DNA or RNA helica 96.6 0.017 3.6E-07 50.6 9.4 130 25-233 190-321 (442)
27 COG1111 MPH1 ERCC4-like helica 96.6 0.0063 1.4E-07 52.8 6.3 53 177-229 347-402 (542)
28 KOG0333|consensus 96.4 0.005 1.1E-07 53.7 4.5 59 173-233 498-556 (673)
29 PTZ00110 helicase; Provisional 96.4 0.0063 1.4E-07 54.7 5.4 58 176-233 359-416 (545)
30 TIGR03714 secA2 accessory Sec 95.8 0.016 3.5E-07 53.5 5.2 56 177-232 407-462 (762)
31 PHA02558 uvsW UvsW helicase; P 95.6 0.023 5E-07 50.6 5.6 58 176-233 326-383 (501)
32 PRK12898 secA preprotein trans 95.6 0.021 4.6E-07 52.0 5.0 54 177-230 456-509 (656)
33 PRK09200 preprotein translocas 95.3 0.033 7.2E-07 51.9 5.4 56 176-231 410-465 (790)
34 COG0513 SrmB Superfamily II DN 95.2 0.025 5.4E-07 50.5 4.2 54 178-233 259-312 (513)
35 PRK05298 excinuclease ABC subu 95.1 0.046 1E-06 50.3 5.7 56 177-232 429-484 (652)
36 PRK04837 ATP-dependent RNA hel 95.0 0.05 1.1E-06 47.3 5.5 55 177-233 240-294 (423)
37 KOG0330|consensus 95.0 0.025 5.3E-07 47.8 3.3 55 177-233 285-339 (476)
38 TIGR00631 uvrb excinuclease AB 94.9 0.05 1.1E-06 49.9 5.4 56 177-232 425-480 (655)
39 PRK13104 secA preprotein trans 94.9 0.053 1.2E-06 50.9 5.5 56 177-232 427-482 (896)
40 KOG0298|consensus 94.8 0.026 5.7E-07 54.1 3.4 85 26-110 589-691 (1394)
41 PRK13107 preprotein translocas 94.7 0.058 1.3E-06 50.6 5.2 56 177-232 432-487 (908)
42 PRK01297 ATP-dependent RNA hel 94.4 0.069 1.5E-06 47.2 5.1 56 176-233 319-374 (475)
43 PRK04537 ATP-dependent RNA hel 94.3 0.069 1.5E-06 48.4 4.8 55 177-233 242-296 (572)
44 PRK11192 ATP-dependent RNA hel 94.3 0.074 1.6E-06 46.4 4.8 54 178-233 231-284 (434)
45 PRK12906 secA preprotein trans 94.2 0.077 1.7E-06 49.4 4.9 55 177-231 423-477 (796)
46 KOG0334|consensus 93.8 0.071 1.5E-06 50.2 3.9 57 176-233 596-652 (997)
47 PRK11776 ATP-dependent RNA hel 93.8 0.11 2.4E-06 45.7 5.1 55 177-233 227-281 (460)
48 PRK12904 preprotein translocas 93.6 0.19 4E-06 47.2 6.2 51 177-227 413-463 (830)
49 TIGR00963 secA preprotein tran 93.4 0.23 4.9E-06 46.0 6.4 51 177-227 388-438 (745)
50 PRK12900 secA preprotein trans 93.4 0.19 4.2E-06 47.7 6.0 51 177-227 581-631 (1025)
51 KOG0339|consensus 92.8 0.13 2.8E-06 45.2 3.6 56 177-233 452-507 (731)
52 KOG0298|consensus 92.7 0.12 2.7E-06 49.8 3.8 50 177-226 1202-1253(1394)
53 KOG0328|consensus 92.4 0.19 4.1E-06 40.9 4.0 54 178-233 252-305 (400)
54 PLN00206 DEAD-box ATP-dependen 92.0 0.22 4.8E-06 44.6 4.4 57 177-233 350-407 (518)
55 KOG0342|consensus 91.7 0.3 6.6E-06 42.6 4.6 56 177-233 314-369 (543)
56 PRK10590 ATP-dependent RNA hel 91.7 0.29 6.3E-06 43.1 4.7 40 194-233 245-284 (456)
57 TIGR01587 cas3_core CRISPR-ass 91.1 0.56 1.2E-05 39.7 5.8 55 178-233 207-263 (358)
58 KOG0341|consensus 90.9 0.37 8.1E-06 41.0 4.2 59 172-233 402-460 (610)
59 PRK11634 ATP-dependent RNA hel 90.8 0.44 9.6E-06 43.7 5.1 55 177-233 230-284 (629)
60 TIGR01389 recQ ATP-dependent D 90.4 0.47 1E-05 43.2 4.9 55 177-233 209-263 (591)
61 TIGR03158 cas3_cyano CRISPR-as 90.3 0.71 1.5E-05 39.3 5.6 56 178-233 251-313 (357)
62 TIGR00614 recQ_fam ATP-depende 89.8 0.58 1.3E-05 41.4 4.9 41 193-233 225-265 (470)
63 PRK11057 ATP-dependent DNA hel 89.8 0.56 1.2E-05 42.9 4.9 53 179-233 223-275 (607)
64 PTZ00424 helicase 45; Provisio 88.6 0.73 1.6E-05 39.6 4.6 53 179-233 254-306 (401)
65 TIGR02621 cas3_GSU0051 CRISPR- 88.6 0.86 1.9E-05 43.0 5.2 53 179-233 256-309 (844)
66 KOG0335|consensus 88.2 0.48 1E-05 41.5 3.1 60 174-233 310-376 (482)
67 KOG0343|consensus 83.9 1.9 4.1E-05 38.6 4.6 56 176-233 297-354 (758)
68 KOG0340|consensus 83.2 2 4.4E-05 36.3 4.3 57 177-233 236-293 (442)
69 KOG0326|consensus 82.2 0.7 1.5E-05 38.4 1.2 60 172-233 302-361 (459)
70 KOG0332|consensus 80.9 3.2 7E-05 35.3 4.7 55 177-233 315-369 (477)
71 KOG4284|consensus 79.8 1 2.2E-05 41.0 1.5 53 179-233 259-311 (980)
72 TIGR00596 rad1 DNA repair prot 79.7 3.7 8E-05 38.9 5.2 45 175-219 267-320 (814)
73 TIGR00580 mfd transcription-re 78.8 4 8.6E-05 39.4 5.2 43 191-233 657-701 (926)
74 KOG0336|consensus 78.4 1.4 3E-05 37.9 1.9 58 175-233 447-504 (629)
75 KOG1123|consensus 78.1 4 8.6E-05 36.3 4.5 55 174-233 523-577 (776)
76 KOG0346|consensus 78.0 3.7 8.1E-05 35.7 4.3 56 177-233 252-307 (569)
77 KOG0345|consensus 77.9 4.4 9.5E-05 35.6 4.7 58 174-233 237-296 (567)
78 PRK12326 preprotein translocas 77.3 6.9 0.00015 36.5 6.1 51 177-227 410-460 (764)
79 TIGR01054 rgy reverse gyrase. 77.3 6.5 0.00014 39.0 6.3 47 180-229 315-364 (1171)
80 PRK13767 ATP-dependent helicas 77.0 4.5 9.7E-05 38.9 5.0 53 181-233 271-329 (876)
81 TIGR03817 DECH_helic helicase/ 76.8 3.1 6.8E-05 39.1 3.9 49 185-233 262-318 (742)
82 TIGR00595 priA primosomal prot 76.8 6.6 0.00014 35.2 5.8 58 175-232 6-64 (505)
83 PRK09401 reverse gyrase; Revie 76.2 5.1 0.00011 39.7 5.2 48 178-228 315-365 (1176)
84 PRK12903 secA preprotein trans 75.4 7.5 0.00016 37.0 5.8 51 177-227 409-459 (925)
85 PLN03137 ATP-dependent DNA hel 74.5 5 0.00011 39.4 4.5 40 194-233 680-719 (1195)
86 cd03028 GRX_PICOT_like Glutare 73.1 7.7 0.00017 25.7 4.1 32 194-225 7-44 (90)
87 TIGR00376 DNA helicase, putati 72.7 11 0.00024 34.8 6.3 55 175-229 182-236 (637)
88 cd01520 RHOD_YbbB Member of th 72.1 9.5 0.00021 27.0 4.7 38 192-229 84-122 (128)
89 KOG0348|consensus 68.2 10 0.00023 34.0 4.8 57 177-233 406-486 (708)
90 COG1198 PriA Primosomal protei 67.8 14 0.00031 34.6 5.8 59 175-233 226-285 (730)
91 cd01524 RHOD_Pyr_redox Member 67.7 10 0.00023 24.8 3.9 37 193-229 50-86 (90)
92 TIGR00365 monothiol glutaredox 67.6 17 0.00038 24.4 5.0 38 187-225 5-48 (97)
93 COG1711 DNA replication initia 67.4 18 0.00039 28.4 5.5 54 20-77 53-109 (223)
94 PRK10689 transcription-repair 65.4 14 0.0003 36.7 5.5 48 185-233 801-850 (1147)
95 COG1202 Superfamily II helicas 64.9 9.7 0.00021 34.6 4.0 58 176-233 416-479 (830)
96 PF13245 AAA_19: Part of AAA d 64.6 21 0.00047 22.8 4.7 39 176-214 20-62 (76)
97 TIGR01970 DEAH_box_HrpB ATP-de 64.4 14 0.00031 35.2 5.3 40 194-233 209-251 (819)
98 PRK05580 primosome assembly pr 64.1 17 0.00036 34.0 5.7 58 175-232 171-229 (679)
99 PRK09694 helicase Cas3; Provis 62.4 19 0.00042 34.6 5.8 51 183-233 549-602 (878)
100 PF02399 Herpes_ori_bp: Origin 61.8 29 0.00063 32.9 6.6 52 178-230 267-318 (824)
101 TIGR03191 benz_CoA_bzdO benzoy 61.7 21 0.00045 31.3 5.5 52 177-230 347-403 (430)
102 KOG0327|consensus 61.4 16 0.00034 31.3 4.4 51 179-233 252-302 (397)
103 PRK10917 ATP-dependent DNA hel 61.3 21 0.00046 33.3 5.8 57 177-233 454-520 (681)
104 PHA02653 RNA helicase NPH-II; 61.1 22 0.00048 33.1 5.8 39 193-231 394-434 (675)
105 PRK12902 secA preprotein trans 60.8 20 0.00043 34.4 5.4 51 177-227 422-472 (939)
106 PRK10824 glutaredoxin-4; Provi 60.7 23 0.0005 24.9 4.6 40 185-225 6-51 (115)
107 cd01523 RHOD_Lact_B Member of 60.4 15 0.00033 24.5 3.6 38 193-230 60-97 (100)
108 PRK11664 ATP-dependent RNA hel 60.0 17 0.00038 34.6 5.0 40 193-232 211-253 (812)
109 cd01534 4RHOD_Repeat_3 Member 59.5 18 0.00038 23.9 3.8 36 194-229 56-91 (95)
110 PRK13103 secA preprotein trans 59.2 15 0.00032 35.3 4.3 51 177-227 432-482 (913)
111 PF09413 DUF2007: Domain of un 59.1 21 0.00047 21.9 3.9 33 196-228 1-33 (67)
112 CHL00122 secA preprotein trans 59.1 26 0.00056 33.5 5.8 51 177-227 407-457 (870)
113 PRK11131 ATP-dependent RNA hel 58.1 17 0.00036 36.5 4.6 54 180-233 271-328 (1294)
114 PRK06646 DNA polymerase III su 57.9 29 0.00063 25.8 5.0 42 175-216 10-51 (154)
115 smart00450 RHOD Rhodanese Homo 57.2 20 0.00044 23.2 3.8 37 193-229 55-92 (100)
116 PF02492 cobW: CobW/HypB/UreG, 56.6 35 0.00076 25.7 5.5 52 176-228 10-61 (178)
117 cd01521 RHOD_PspE2 Member of t 55.6 25 0.00054 24.0 4.2 37 193-229 63-101 (110)
118 PRK12899 secA preprotein trans 54.7 30 0.00066 33.4 5.6 51 177-227 551-601 (970)
119 cd01533 4RHOD_Repeat_2 Member 54.1 38 0.00081 23.0 4.9 36 194-229 66-103 (109)
120 cd01528 RHOD_2 Member of the R 54.0 43 0.00092 22.3 5.1 37 193-229 57-94 (101)
121 PRK05728 DNA polymerase III su 53.5 36 0.00078 24.8 4.8 41 176-216 11-51 (142)
122 TIGR00643 recG ATP-dependent D 53.3 31 0.00068 31.9 5.5 55 179-233 433-497 (630)
123 PF01352 KRAB: KRAB box; Inte 52.6 17 0.00036 20.3 2.3 16 60-75 17-32 (41)
124 cd00158 RHOD Rhodanese Homolog 52.3 34 0.00074 21.7 4.2 38 192-229 48-86 (89)
125 PTZ00062 glutaredoxin; Provisi 51.6 67 0.0015 25.1 6.3 43 182-225 101-149 (204)
126 PRK12901 secA preprotein trans 51.4 21 0.00046 34.8 4.1 51 177-227 611-661 (1112)
127 cd01518 RHOD_YceA Member of th 51.3 23 0.00051 23.6 3.4 37 193-229 60-97 (101)
128 PF13086 AAA_11: AAA domain; P 51.0 42 0.00091 25.8 5.3 52 176-227 27-94 (236)
129 PF11019 DUF2608: Protein of u 50.4 54 0.0012 26.5 5.8 50 176-225 160-209 (252)
130 TIGR01967 DEAH_box_HrpA ATP-de 50.2 27 0.00058 35.1 4.7 54 179-232 263-320 (1283)
131 PRK14873 primosome assembly pr 49.7 39 0.00084 31.5 5.4 58 176-233 170-229 (665)
132 KOG0347|consensus 49.4 7.2 0.00016 35.1 0.7 40 194-233 463-502 (731)
133 cd01447 Polysulfide_ST Polysul 49.2 19 0.00042 23.9 2.7 37 193-229 60-97 (103)
134 PF04364 DNA_pol3_chi: DNA pol 48.4 37 0.0008 24.5 4.2 38 180-217 15-52 (137)
135 TIGR03167 tRNA_sel_U_synt tRNA 48.3 46 0.001 27.8 5.2 52 177-228 57-109 (311)
136 cd01529 4RHOD_Repeats Member o 48.1 41 0.0009 22.1 4.2 37 193-229 55-92 (96)
137 PF00581 Rhodanese: Rhodanese- 47.4 41 0.00089 22.4 4.2 38 192-229 65-108 (113)
138 COG0653 SecA Preprotein transl 47.1 27 0.00059 33.2 4.0 53 175-227 410-462 (822)
139 COG0514 RecQ Superfamily II DN 46.9 19 0.00041 32.9 2.9 39 195-233 231-269 (590)
140 cd08185 Fe-ADH1 Iron-containin 45.1 65 0.0014 27.6 5.9 49 177-228 11-64 (380)
141 cd01449 TST_Repeat_2 Thiosulfa 44.9 55 0.0012 22.3 4.6 37 193-229 77-114 (118)
142 cd01532 4RHOD_Repeat_1 Member 44.8 46 0.00099 21.8 4.0 36 194-229 50-88 (92)
143 cd01527 RHOD_YgaP Member of th 44.7 42 0.0009 22.2 3.8 37 193-229 53-90 (99)
144 cd01525 RHOD_Kc Member of the 44.0 42 0.00092 22.4 3.8 36 194-229 65-101 (105)
145 TIGR01689 EcbF-BcbF capsule bi 43.5 61 0.0013 23.1 4.6 45 181-225 27-84 (126)
146 TIGR03190 benz_CoA_bzdN benzoy 43.1 56 0.0012 28.1 5.2 49 179-229 301-354 (377)
147 cd01444 GlpE_ST GlpE sulfurtra 42.2 44 0.00096 21.7 3.6 37 193-229 55-92 (96)
148 KOG0344|consensus 42.2 46 0.001 30.2 4.5 55 177-233 372-427 (593)
149 PF12646 DUF3783: Domain of un 41.6 52 0.0011 19.8 3.5 25 196-220 2-27 (58)
150 PF04007 DUF354: Protein of un 41.5 77 0.0017 26.8 5.6 49 175-226 8-56 (335)
151 KOG0337|consensus 41.4 35 0.00077 29.8 3.5 58 175-233 243-300 (529)
152 PF10740 DUF2529: Protein of u 40.6 49 0.0011 25.0 3.8 33 193-225 81-115 (172)
153 PF00782 DSPc: Dual specificit 40.4 82 0.0018 22.0 5.0 44 177-220 56-102 (133)
154 cd01526 RHOD_ThiF Member of th 40.2 33 0.00071 23.9 2.8 37 193-229 71-109 (122)
155 cd01519 RHOD_HSP67B2 Member of 39.6 43 0.00093 22.3 3.3 36 194-229 66-102 (106)
156 PF13361 UvrD_C: UvrD-like hel 39.2 1.3E+02 0.0028 24.7 6.7 49 181-230 61-112 (351)
157 cd08187 BDH Butanol dehydrogen 38.8 82 0.0018 27.1 5.5 55 172-229 9-68 (382)
158 cd03769 SR_IS607_transposase_l 38.4 1.5E+02 0.0032 21.2 6.2 48 181-228 49-100 (134)
159 PF12926 MOZART2: Mitotic-spin 38.4 69 0.0015 21.3 3.8 41 61-111 23-63 (88)
160 COG2241 CobL Precorrin-6B meth 38.3 58 0.0013 25.6 4.1 40 177-220 127-166 (210)
161 PRK09860 putative alcohol dehy 38.1 94 0.002 26.8 5.8 53 174-229 13-70 (383)
162 KOG0354|consensus 37.8 1E+02 0.0022 29.1 6.1 55 175-229 392-451 (746)
163 PF13344 Hydrolase_6: Haloacid 37.6 82 0.0018 21.2 4.4 38 183-220 19-57 (101)
164 PF07652 Flavi_DEAD: Flaviviru 37.6 64 0.0014 23.8 4.0 45 176-220 14-59 (148)
165 PRK13958 N-(5'-phosphoribosyl) 37.5 85 0.0018 24.5 5.0 48 181-230 40-87 (207)
166 PF05971 Methyltransf_10: Prot 37.2 79 0.0017 26.3 4.9 54 170-223 223-279 (299)
167 KOG0338|consensus 36.9 31 0.00066 31.0 2.6 53 179-233 413-465 (691)
168 TIGR00595 priA primosomal prot 35.7 1.1E+02 0.0024 27.5 6.1 26 207-232 271-298 (505)
169 PRK04322 peptidyl-tRNA hydrola 35.4 1.5E+02 0.0034 20.6 6.1 40 185-224 37-77 (113)
170 PRK13700 conjugal transfer pro 34.6 45 0.00097 31.4 3.4 26 177-202 196-221 (732)
171 cd01535 4RHOD_Repeat_4 Member 34.4 1.1E+02 0.0023 22.3 4.8 37 193-229 48-85 (145)
172 PRK01222 N-(5'-phosphoribosyl) 34.4 1.2E+02 0.0025 23.8 5.3 47 182-230 43-89 (210)
173 cd01448 TST_Repeat_1 Thiosulfa 34.4 62 0.0013 22.3 3.5 37 193-229 78-116 (122)
174 COG0396 sufC Cysteine desulfur 33.3 82 0.0018 25.3 4.2 44 180-228 180-223 (251)
175 cd01445 TST_Repeats Thiosulfat 33.2 1.1E+02 0.0025 21.9 4.8 48 182-229 82-134 (138)
176 PRK05569 flavodoxin; Provision 32.9 1.1E+02 0.0025 21.6 4.8 43 179-221 68-114 (141)
177 TIGR02981 phageshock_pspE phag 32.8 1.6E+02 0.0034 19.9 5.5 36 194-229 58-93 (101)
178 PF10490 CENP-F_C_Rb_bdg: Rb-b 32.2 11 0.00023 21.7 -0.6 11 32-42 32-42 (49)
179 COG1435 Tdk Thymidine kinase [ 32.0 67 0.0015 25.0 3.4 30 176-205 14-43 (201)
180 PRK10917 ATP-dependent DNA hel 31.9 1.1E+02 0.0025 28.6 5.6 56 176-231 292-351 (681)
181 PRK02362 ski2-like helicase; P 31.6 73 0.0016 30.1 4.4 53 181-233 230-318 (737)
182 PF09456 RcsC: RcsC Alpha-Beta 31.5 54 0.0012 22.1 2.5 28 203-230 8-35 (92)
183 COG1205 Distinct helicase fami 31.2 1.6E+02 0.0034 28.5 6.5 55 178-232 290-352 (851)
184 COG1358 RPL8A Ribosomal protei 30.4 2E+02 0.0042 20.3 5.4 50 177-226 25-78 (116)
185 cd01443 Cdc25_Acr2p Cdc25 enzy 30.4 1.8E+02 0.0038 19.7 5.3 36 194-229 66-109 (113)
186 TIGR00580 mfd transcription-re 30.2 1.4E+02 0.0031 29.2 6.0 48 177-224 219-266 (926)
187 COG1201 Lhr Lhr-like helicases 30.2 1.1E+02 0.0024 29.3 5.2 53 181-233 240-293 (814)
188 cd08181 PPD-like 1,3-propanedi 30.0 1.9E+02 0.0041 24.5 6.3 50 177-229 11-65 (357)
189 PRK01172 ski2-like helicase; P 29.5 92 0.002 29.0 4.6 34 183-216 225-258 (674)
190 PF08538 DUF1749: Protein of u 29.4 1.4E+02 0.0031 24.9 5.2 40 178-217 88-130 (303)
191 KOG1805|consensus 29.4 1.4E+02 0.003 29.3 5.6 50 176-225 695-744 (1100)
192 cd08186 Fe-ADH8 Iron-containin 29.2 2.1E+02 0.0045 24.6 6.5 52 178-229 9-66 (383)
193 PRK05299 rpsB 30S ribosomal pr 29.0 2.4E+02 0.0051 22.9 6.4 52 177-228 47-100 (258)
194 PRK14701 reverse gyrase; Provi 28.9 92 0.002 32.5 4.7 44 181-227 320-366 (1638)
195 COG0626 MetC Cystathionine bet 28.8 1.6E+02 0.0035 25.6 5.6 55 175-229 83-138 (396)
196 COG5610 Predicted hydrolase (H 28.8 93 0.002 27.7 4.1 39 182-220 103-141 (635)
197 cd05017 SIS_PGI_PMI_1 The memb 28.7 1.7E+02 0.0037 20.1 5.0 46 175-224 51-96 (119)
198 TIGR02263 benz_CoA_red_C benzo 28.6 1.1E+02 0.0024 26.3 4.7 48 179-228 309-361 (380)
199 cd01427 HAD_like Haloacid deha 28.4 1.5E+02 0.0033 19.9 4.8 35 183-219 29-63 (139)
200 TIGR02260 benz_CoA_red_B benzo 28.4 1.4E+02 0.0031 26.0 5.4 50 179-230 338-393 (413)
201 PF10412 TrwB_AAD_bind: Type I 28.3 69 0.0015 27.6 3.4 32 176-207 25-56 (386)
202 cd01522 RHOD_1 Member of the R 28.3 1.4E+02 0.003 20.5 4.4 39 192-230 62-101 (117)
203 cd08183 Fe-ADH2 Iron-containin 28.1 1.8E+02 0.0039 24.9 5.9 46 178-226 9-55 (374)
204 PF00265 TK: Thymidine kinase; 28.1 70 0.0015 24.2 3.0 30 176-205 11-40 (176)
205 cd01425 RPS2 Ribosomal protein 28.0 2.8E+02 0.006 21.3 6.6 51 177-227 39-91 (193)
206 COG0556 UvrB Helicase subunit 27.8 1.3E+02 0.0029 27.4 4.9 49 182-230 431-482 (663)
207 COG2607 Predicted ATPase (AAA+ 27.5 72 0.0016 25.9 3.0 27 178-204 122-148 (287)
208 COG3172 NadR Predicted ATPase/ 27.2 79 0.0017 24.0 3.0 24 204-227 142-165 (187)
209 cd08191 HHD 6-hydroxyhexanoate 26.9 2.3E+02 0.0051 24.3 6.4 49 178-229 9-61 (386)
210 COG2927 HolC DNA polymerase II 26.8 2E+02 0.0044 21.1 5.0 35 182-216 17-51 (144)
211 TIGR02638 lactal_redase lactal 26.7 2.1E+02 0.0045 24.6 6.0 56 171-229 8-68 (379)
212 cd08171 GlyDH-like2 Glycerol d 26.5 2.5E+02 0.0054 23.7 6.4 45 179-226 10-57 (345)
213 PRK10586 putative oxidoreducta 26.1 2.5E+02 0.0053 24.0 6.3 57 171-230 13-73 (362)
214 PF14626 RNase_Zc3h12a_2: Zc3h 26.1 94 0.002 22.0 3.0 22 180-201 9-30 (122)
215 PF02875 Mur_ligase_C: Mur lig 26.1 1.9E+02 0.0041 18.7 5.8 54 177-231 24-84 (91)
216 PRK05973 replicative DNA helic 25.9 1.6E+02 0.0035 23.6 4.8 43 176-219 74-116 (237)
217 TIGR03865 PQQ_CXXCW PQQ-depend 25.9 2E+02 0.0043 21.3 5.1 37 193-229 115-153 (162)
218 PF10017 Methyltransf_33: Hist 25.9 1.1E+02 0.0024 21.7 3.6 33 191-223 82-114 (127)
219 PRK10287 thiosulfate:cyanide s 25.5 2.2E+02 0.0048 19.3 5.2 36 194-229 60-95 (104)
220 KOG0599|consensus 25.5 51 0.0011 27.3 1.9 63 29-111 25-87 (411)
221 KOG1803|consensus 25.4 84 0.0018 28.9 3.4 49 176-224 211-259 (649)
222 cd00046 DEXDc DEAD-like helica 25.2 2.2E+02 0.0047 19.1 6.3 53 176-228 10-67 (144)
223 KOG3282|consensus 25.0 2.9E+02 0.0063 21.2 5.7 41 185-225 114-156 (190)
224 PLN02160 thiosulfate sulfurtra 25.0 1.6E+02 0.0034 21.1 4.3 38 192-229 79-117 (136)
225 PF10879 DUF2674: Protein of u 25.0 1.4E+02 0.003 17.9 3.1 29 195-224 6-34 (67)
226 COG0607 PspE Rhodanese-related 24.5 86 0.0019 20.8 2.8 37 193-229 60-97 (110)
227 PF01726 LexA_DNA_bind: LexA D 24.3 87 0.0019 19.4 2.5 20 59-78 2-21 (65)
228 PRK15454 ethanol dehydrogenase 24.2 1.7E+02 0.0037 25.3 5.1 60 168-229 25-88 (395)
229 COG1560 HtrB Lauroyl/myristoyl 24.2 1.9E+02 0.004 24.3 5.1 38 184-221 112-149 (308)
230 cd08172 GlyDH-like1 Glycerol d 23.9 2.1E+02 0.0045 24.2 5.5 46 179-227 11-59 (347)
231 cd00268 DEADc DEAD-box helicas 23.8 3.2E+02 0.0069 20.5 6.8 55 176-230 46-109 (203)
232 COG2247 LytB Putative cell wal 23.8 1.1E+02 0.0024 25.7 3.6 38 192-229 74-111 (337)
233 TIGR01011 rpsB_bact ribosomal 23.8 2.9E+02 0.0062 21.9 5.9 52 177-228 45-98 (225)
234 KOG2414|consensus 23.8 1.1E+02 0.0023 26.8 3.5 22 60-81 334-355 (488)
235 PRK10624 L-1,2-propanediol oxi 23.5 2.7E+02 0.0059 23.9 6.2 54 174-229 12-69 (382)
236 cd02407 PTH2_family Peptidyl-t 23.5 2.7E+02 0.0058 19.5 5.6 40 186-225 40-80 (115)
237 PRK06756 flavodoxin; Provision 23.4 2.3E+02 0.005 20.3 5.0 42 180-221 69-117 (148)
238 PF00318 Ribosomal_S2: Ribosom 23.2 2E+02 0.0044 22.4 4.9 46 177-222 39-84 (211)
239 smart00195 DSPc Dual specifici 23.1 2.5E+02 0.0054 19.7 5.1 41 179-219 63-106 (138)
240 TIGR01261 hisB_Nterm histidino 23.1 3.2E+02 0.0068 20.2 6.8 39 183-221 34-85 (161)
241 CHL00067 rps2 ribosomal protei 23.0 2.6E+02 0.0057 22.2 5.5 51 177-227 51-103 (230)
242 PRK00254 ski2-like helicase; P 23.0 3.3E+02 0.0072 25.7 7.1 57 175-231 48-108 (720)
243 COG0467 RAD55 RecA-superfamily 22.7 1.8E+02 0.004 23.2 4.7 44 176-220 33-76 (260)
244 COG4098 comFA Superfamily II D 22.7 2.6E+02 0.0056 24.1 5.5 57 175-231 125-183 (441)
245 PF06050 HGD-D: 2-hydroxygluta 22.6 1.4E+02 0.0031 24.9 4.2 48 178-228 273-327 (349)
246 PRK11784 tRNA 2-selenouridine 22.6 2.5E+02 0.0054 23.9 5.6 37 193-229 87-124 (345)
247 PF03033 Glyco_transf_28: Glyc 22.5 1.7E+02 0.0038 20.3 4.2 47 176-227 8-54 (139)
248 PF02399 Herpes_ori_bp: Origin 22.5 2.4E+02 0.0051 27.1 5.8 45 175-219 58-103 (824)
249 PTZ00222 60S ribosomal protein 22.3 2.3E+02 0.005 23.0 5.0 36 192-227 146-184 (263)
250 TIGR00283 arch_pth2 peptidyl-t 22.3 2.8E+02 0.0062 19.4 5.6 40 185-224 39-79 (115)
251 PRK09751 putative ATP-dependen 22.2 1.4E+02 0.003 30.9 4.6 24 193-216 243-266 (1490)
252 PF14417 MEDS: MEDS: MEthanoge 22.2 2E+02 0.0044 21.8 4.7 44 177-220 30-73 (191)
253 KOG1765|consensus 22.1 85 0.0018 23.6 2.3 55 1-55 15-79 (181)
254 cd01446 DSP_MapKP N-terminal r 21.9 1.4E+02 0.0031 20.9 3.6 37 193-229 74-122 (132)
255 PRK00254 ski2-like helicase; P 21.7 1.5E+02 0.0032 28.0 4.4 28 184-211 228-255 (720)
256 PRK05320 rhodanese superfamily 21.4 2.2E+02 0.0048 23.0 4.9 37 193-229 174-211 (257)
257 cd01124 KaiC KaiC is a circadi 21.0 2.6E+02 0.0056 20.6 5.1 44 176-220 9-52 (187)
258 TIGR00643 recG ATP-dependent D 20.7 2.5E+02 0.0055 26.0 5.7 57 176-232 266-326 (630)
259 COG0241 HisB Histidinol phosph 20.7 2.9E+02 0.0063 21.1 5.1 37 184-220 37-86 (181)
260 cd01821 Rhamnogalacturan_acety 20.7 2.9E+02 0.0064 20.7 5.4 41 184-224 97-152 (198)
261 KOG0351|consensus 20.7 73 0.0016 31.1 2.2 53 181-233 470-524 (941)
262 TIGR01459 HAD-SF-IIA-hyp4 HAD- 20.6 1.8E+02 0.0039 23.0 4.2 39 182-220 28-66 (242)
263 cd02430 PTH2 Peptidyl-tRNA hyd 20.5 3.1E+02 0.0068 19.2 5.5 40 185-224 39-79 (115)
264 PF12710 HAD: haloacid dehalog 20.4 1.2E+02 0.0026 22.5 3.1 37 183-221 94-130 (192)
265 PRK03094 hypothetical protein; 20.3 1.1E+02 0.0024 20.0 2.4 20 207-226 10-29 (80)
266 PF00162 PGK: Phosphoglycerate 20.3 90 0.002 27.0 2.5 34 173-206 26-59 (384)
267 KOG1321|consensus 20.2 1.6E+02 0.0034 24.9 3.7 41 185-225 144-197 (395)
268 COG0560 SerB Phosphoserine pho 20.1 2.1E+02 0.0045 22.3 4.4 31 184-214 83-114 (212)
269 PRK10329 glutaredoxin-like pro 20.1 2.5E+02 0.0055 17.9 4.2 16 210-225 17-32 (81)
270 TIGR03877 thermo_KaiC_1 KaiC d 20.0 2.5E+02 0.0055 22.1 5.0 43 176-219 31-73 (237)
No 1
>KOG0389|consensus
Probab=100.00 E-value=7.8e-39 Score=277.75 Aligned_cols=210 Identities=42% Similarity=0.699 Sum_probs=192.3
Q ss_pred hhhHHHHHHHHHhhhhhhhhcchhhhhhcCCCceEEEEEeeCCHHHHHHHHHHHHHHhhhcCCCCCCCCccchhhHHHHH
Q psy2047 20 TFEVEQVDQAKRIISPFMLRRLKKDVLTELPKKTALVIKVPMIPSQAEKYRGLMEDFKKTANPEGSNRSNEISHMSMFMM 99 (233)
Q Consensus 20 ~~~~~~~~~L~~~l~~~~lRRtk~~~~~~LP~k~e~~v~v~ls~~q~~lY~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~ 99 (233)
....+++.+-+.+++||+|||.|.+++.+||||+.++.+|+|++.|+.+|..+.+......+....++.... -.++++
T Consensus 607 ~l~qerIsrAK~im~PFILRR~K~qVL~~LPpK~~~Ie~c~mse~Q~~~Y~~~~~~~~~~~~~~~~ns~~~~--~~vlmq 684 (941)
T KOG0389|consen 607 LLSQERISRAKTIMKPFILRRLKSQVLKQLPPKIQRIEYCEMSEKQKQLYDELIELYDVKLNEVSKNSELKS--GNVLMQ 684 (941)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCccceeEeeecchHHHHHHHHHHHHHhhhcccccccccccc--chHHHH
Confidence 344668999999999999999999999999999999999999999999999999988655543333322222 568999
Q ss_pred HHHhhccccchhhccchhhHHHHHHhhhcCCCCCCCCchhhhhhhccCCchhhHhhhhcccccccccccCCchhhhcccc
Q psy2047 100 LRKMANHPLGLRYYFQENTLREIADCLVEDPTYKGTNPQYILEDISWLSDYDIHQLSLKHKTLDCAKYKVPDDLVVESGK 179 (233)
Q Consensus 100 Lr~~c~hp~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~K 179 (233)
||+++|||.|+...+..+.+..++..+..++++...+.+.++||...++|++++++|..++++. .+..+...|..|||
T Consensus 685 lRK~AnHPLL~R~~Y~de~L~~mak~il~e~ay~~~n~qyIfEDm~~msDfelHqLc~~f~~~~--~f~L~d~~~mdSgK 762 (941)
T KOG0389|consen 685 LRKAANHPLLFRSIYTDEKLRKMAKRILNEPAYKKANEQYIFEDMEVMSDFELHQLCCQFRHLS--KFQLKDDLWMDSGK 762 (941)
T ss_pred HHHHhcChhHHHHhccHHHHHHHHHHHhCchhhhhcCHHHHHHHHHhhhHHHHHHHHHhcCCCc--ccccCCchhhhhhh
Confidence 9999999999999999999999999999999999999999999999999999999999999777 88899999999999
Q ss_pred HHHHHHHHhHHHhCCCeEEEEechhhHHHHHHHHHHhcCCeEEEeeCCcccCCC
Q psy2047 180 LKKLDEILPDLKKNGHRVLIFSQFIFVLDILGHYMDIRGWRHLRLDGATQVSSR 233 (233)
Q Consensus 180 l~~l~~lL~~~~~~~~KvlIFSq~~~~Ld~l~~~l~~~gi~~~rldG~~~~~~R 233 (233)
+..|..+|.++.++|+|||||||||.||||||..|.-.|+.|+||||+|++..|
T Consensus 763 ~r~L~~LLp~~k~~G~RVLiFSQFTqmLDILE~~L~~l~~~ylRLDGsTqV~~R 816 (941)
T KOG0389|consen 763 CRKLKELLPKIKKKGDRVLIFSQFTQMLDILEVVLDTLGYKYLRLDGSTQVNDR 816 (941)
T ss_pred HhHHHHHHHHHhhcCCEEEEeeHHHHHHHHHHHHHHhcCceEEeecCCccchHH
Confidence 999999999999999999999999999999999999999999999999999876
No 2
>KOG0385|consensus
Probab=100.00 E-value=1.3e-36 Score=263.33 Aligned_cols=180 Identities=37% Similarity=0.574 Sum_probs=155.7
Q ss_pred CCCchhhhhhhcchhhhhhhhhHHHHHHHHHhhhhhhhhcchhhhhhcCCCceEEEEEeeCCHHHHHHHHHHHHHHhhhc
Q psy2047 1 MDSDSEDDARYEDKRKEQATFEVEQVDQAKRIISPFMLRRLKKDVLTELPKKTALVIKVPMIPSQAEKYRGLMEDFKKTA 80 (233)
Q Consensus 1 lg~~~~F~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~lRRtk~~~~~~LP~k~e~~v~v~ls~~q~~lY~~~~~~~~~~~ 80 (233)
++++.+|..||......+ +.+.+.+||.+++||+|||+|.++...||||+|.+++|.||..|++.|..++..-...+
T Consensus 347 F~~~e~F~swF~~~~~~~---~~e~v~~Lh~vL~pFlLRR~K~dVe~sLppKkE~~iyvgms~mQkk~Y~~iL~kdl~~~ 423 (971)
T KOG0385|consen 347 FNSAEDFDSWFDFTNCEG---DQELVSRLHKVLRPFLLRRIKSDVEKSLPPKKELIIYVGMSSMQKKWYKAILMKDLDAL 423 (971)
T ss_pred ccCHHHHHHHHccccccc---CHHHHHHHHhhhhHHHHHHHHHhHhhcCCCcceeeEeccchHHHHHHHHHHHHhcchhh
Confidence 578899999998864333 33578999999999999999999999999999999999999999999999998776666
Q ss_pred CCCCCCCCccchhhHHHHHHHHhhccccchhhccchhhHHHHHHhhhcCCCCCCCCchhhhhhhccCCchhhHhhhhccc
Q psy2047 81 NPEGSNRSNEISHMSMFMMLRKMANHPLGLRYYFQENTLREIADCLVEDPTYKGTNPQYILEDISWLSDYDIHQLSLKHK 160 (233)
Q Consensus 81 ~~~~~~~~~~~~~l~~l~~Lr~~c~hp~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (233)
+..+.. .......++++||++||||+|+.+. +
T Consensus 424 n~~~~~--~k~kL~NI~mQLRKccnHPYLF~g~-e--------------------------------------------- 455 (971)
T KOG0385|consen 424 NGEGKG--EKTKLQNIMMQLRKCCNHPYLFDGA-E--------------------------------------------- 455 (971)
T ss_pred cccccc--hhhHHHHHHHHHHHhcCCccccCCC-C---------------------------------------------
Confidence 533322 3566779999999999999999641 0
Q ss_pred ccccccccCCchhhhccccHHHHHHHHhHHHhCCCeEEEEechhhHHHHHHHHHHhcCCeEEEeeCCcccCCC
Q psy2047 161 TLDCAKYKVPDDLVVESGKLKKLDEILPDLKKNGHRVLIFSQFIFVLDILGHYMDIRGWRHLRLDGATQVSSR 233 (233)
Q Consensus 161 ~~~~~~~~~~~~~~~~s~Kl~~l~~lL~~~~~~~~KvlIFSq~~~~Ld~l~~~l~~~gi~~~rldG~~~~~~R 233 (233)
.-+++.....++..|||+.+|.++|..+.+.|+|||||||++.|||||+.+|.-+|+.|+||||+|+..+|
T Consensus 456 --Pg~pyttdehLv~nSGKm~vLDkLL~~Lk~~GhRVLIFSQmt~mLDILeDyc~~R~y~ycRiDGSt~~eeR 526 (971)
T KOG0385|consen 456 --PGPPYTTDEHLVTNSGKMLVLDKLLPKLKEQGHRVLIFSQMTRMLDILEDYCMLRGYEYCRLDGSTSHEER 526 (971)
T ss_pred --CCCCCCcchHHHhcCcceehHHHHHHHHHhCCCeEEEeHHHHHHHHHHHHHHHhcCceeEeecCCCCcHHH
Confidence 01256666788899999999999999999999999999999999999999999999999999999998876
No 3
>KOG0387|consensus
Probab=99.97 E-value=2.3e-31 Score=231.63 Aligned_cols=181 Identities=29% Similarity=0.389 Sum_probs=149.3
Q ss_pred CCCchhhhhhhcchhhhhh---------hhhHHHHHHHHHhhhhhhhhcchhhhhh-cCCCceEEEEEeeCCHHHHHHHH
Q psy2047 1 MDSDSEDDARYEDKRKEQA---------TFEVEQVDQAKRIISPFMLRRLKKDVLT-ELPKKTALVIKVPMIPSQAEKYR 70 (233)
Q Consensus 1 lg~~~~F~~~~~~~~~~~~---------~~~~~~~~~L~~~l~~~~lRRtk~~~~~-~LP~k~e~~v~v~ls~~q~~lY~ 70 (233)
||++..|...|.-|+..+. ..+.++...|+.++.|++|||+|.++.. .||.|.|.|++|.||+.|+++|.
T Consensus 395 Lgt~~~F~~~f~~pI~~GgyaNAs~~qv~~aykca~~Lr~lI~PylLRR~K~dv~~~~Lp~K~E~VlfC~LT~~QR~~Y~ 474 (923)
T KOG0387|consen 395 LGTLPVFQQNFEHPINRGGYANASPRQVQTAYKCAVALRDLISPYLLRRMKSDVKGLKLPKKEEIVLFCRLTKLQRRLYQ 474 (923)
T ss_pred ccchHHHHhhhhhheeccccCCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhccCCCccceEEEEeccHHHHHHHH
Confidence 7999999999988877543 4556778999999999999999999988 89999999999999999999999
Q ss_pred HHHHHHhhhcCCCCCCCCccchhhHHHHHHHHhhccccchhhccchhhHHHHHHhhhcCCCCCCCCchhhhhhhccCCch
Q psy2047 71 GLMEDFKKTANPEGSNRSNEISHMSMFMMLRKMANHPLGLRYYFQENTLREIADCLVEDPTYKGTNPQYILEDISWLSDY 150 (233)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~~l~~l~~Lr~~c~hp~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (233)
.+++.....-. -.+....|.-+..||.+||||.|+.+..+ ...
T Consensus 475 ~fl~s~~v~~i-----~ng~~~~l~Gi~iLrkICnHPdll~~~~~--------------~~~------------------ 517 (923)
T KOG0387|consen 475 RFLNSSEVNKI-----LNGKRNCLSGIDILRKICNHPDLLDRRDE--------------DEK------------------ 517 (923)
T ss_pred HHhhhHHHHHH-----HcCCccceechHHHHhhcCCcccccCccc--------------ccc------------------
Confidence 99987543211 12345668888999999999999864210 000
Q ss_pred hhHhhhhcccccccccccCCchhhhccccHHHHHHHHhHHHhCCCeEEEEechhhHHHHHHHHHH-hcCCeEEEeeCCcc
Q psy2047 151 DIHQLSLKHKTLDCAKYKVPDDLVVESGKLKKLDEILPDLKKNGHRVLIFSQFIFVLDILGHYMD-IRGWRHLRLDGATQ 229 (233)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~Kl~~l~~lL~~~~~~~~KvlIFSq~~~~Ld~l~~~l~-~~gi~~~rldG~~~ 229 (233)
.....+..+..|||+.++..+|..|.+.|+|+|+|||...|||+||.+|. ..||.|+|+||+||
T Consensus 518 ---------------~~~D~~g~~k~sGKm~vl~~ll~~W~kqg~rvllFsqs~~mLdilE~fL~~~~~ysylRmDGtT~ 582 (923)
T KOG0387|consen 518 ---------------QGPDYEGDPKRSGKMKVLAKLLKDWKKQGDRVLLFSQSRQMLDILESFLRRAKGYSYLRMDGTTP 582 (923)
T ss_pred ---------------cCCCcCCChhhcchHHHHHHHHHHHhhCCCEEEEehhHHHHHHHHHHHHHhcCCceEEEecCCCc
Confidence 00011134677999999999999999999999999999999999999999 68999999999999
Q ss_pred cCCC
Q psy2047 230 VSSR 233 (233)
Q Consensus 230 ~~~R 233 (233)
++.|
T Consensus 583 ~~~R 586 (923)
T KOG0387|consen 583 AALR 586 (923)
T ss_pred cchh
Confidence 9877
No 4
>KOG0384|consensus
Probab=99.97 E-value=2e-31 Score=240.47 Aligned_cols=182 Identities=34% Similarity=0.521 Sum_probs=143.9
Q ss_pred CchhhhhhhcchhhhhhhhhHHHHHHHHHhhhhhhhhcchhhhhhcCCCceEEEEEeeCCHHHHHHHHHHHHHHhhhcCC
Q psy2047 3 SDSEDDARYEDKRKEQATFEVEQVDQAKRIISPFMLRRLKKDVLTELPKKTALVIKVPMIPSQAEKYRGLMEDFKKTANP 82 (233)
Q Consensus 3 ~~~~F~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~lRRtk~~~~~~LP~k~e~~v~v~ls~~q~~lY~~~~~~~~~~~~~ 82 (233)
++.+|...| .....+.++.|+.+|+|+||||.|.++.+.||+|.|.++.|+||..|++.|+.++..-...+..
T Consensus 557 ~~~~f~~~~-------~~~~e~~~~~L~~~L~P~~lRr~kkdvekslp~k~E~IlrVels~lQk~yYk~ILtkN~~~LtK 629 (1373)
T KOG0384|consen 557 SWDEFLEEF-------DEETEEQVRKLQQILKPFLLRRLKKDVEKSLPPKEETILRVELSDLQKQYYKAILTKNFSALTK 629 (1373)
T ss_pred cHHHHHHhh-------cchhHHHHHHHHHHhhHHHHHHHHhhhccCCCCCcceEEEeehhHHHHHHHHHHHHhhHHHHhc
Confidence 445555555 2223467899999999999999999999999999999999999999999999998876655543
Q ss_pred CCCCCCccchhhHHHHHHHHhhccccchhhccchhhHHHHHHhhhcCCCCCCCCchhhhhhhccCCchhhHhhhhccccc
Q psy2047 83 EGSNRSNEISHMSMFMMLRKMANHPLGLRYYFQENTLREIADCLVEDPTYKGTNPQYILEDISWLSDYDIHQLSLKHKTL 162 (233)
Q Consensus 83 ~~~~~~~~~~~l~~l~~Lr~~c~hp~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (233)
.. .+...++|.+++-||++||||+|+.++.+. +.....+
T Consensus 630 G~--~g~~~~lLNimmELkKccNHpyLi~gaee~-----~~~~~~~---------------------------------- 668 (1373)
T KOG0384|consen 630 GA--KGSTPSLLNIMMELKKCCNHPYLIKGAEEK-----ILGDFRD---------------------------------- 668 (1373)
T ss_pred cC--CCCCchHHHHHHHHHHhcCCccccCcHHHH-----HHHhhhh----------------------------------
Confidence 22 233378999999999999999999754221 1111100
Q ss_pred ccccccCCchhhhccccHHHHHHHHhHHHhCCCeEEEEechhhHHHHHHHHHHhcCCeEEEeeCCcccCCC
Q psy2047 163 DCAKYKVPDDLVVESGKLKKLDEILPDLKKNGHRVLIFSQFIFVLDILGHYMDIRGWRHLRLDGATQVSSR 233 (233)
Q Consensus 163 ~~~~~~~~~~~~~~s~Kl~~l~~lL~~~~~~~~KvlIFSq~~~~Ld~l~~~l~~~gi~~~rldG~~~~~~R 233 (233)
+.....-..++.+|||+.+|..+|..+.+.|+|||||||.+.|||||+.+|..+||+|-||||+++.+-|
T Consensus 669 -~~~d~~L~~lI~sSGKlVLLDKLL~rLk~~GHrVLIFSQMVRmLDIL~eYL~~r~ypfQRLDGsvrgelR 738 (1373)
T KOG0384|consen 669 -KMRDEALQALIQSSGKLVLLDKLLPRLKEGGHRVLIFSQMVRMLDILAEYLSLRGYPFQRLDGSVRGELR 738 (1373)
T ss_pred -cchHHHHHHHHHhcCcEEeHHHHHHHHhcCCceEEEhHHHHHHHHHHHHHHHHcCCcceeccCCcchHHH
Confidence 0000011245788999999999999999999999999999999999999999999999999999987644
No 5
>PLN03142 Probable chromatin-remodeling complex ATPase chain; Provisional
Probab=99.96 E-value=1.9e-29 Score=232.22 Aligned_cols=178 Identities=35% Similarity=0.511 Sum_probs=146.7
Q ss_pred CCCchhhhhhhcchhhhhhhhhHHHHHHHHHhhhhhhhhcchhhhhhcCCCceEEEEEeeCCHHHHHHHHHHHHHHhhhc
Q psy2047 1 MDSDSEDDARYEDKRKEQATFEVEQVDQAKRIISPFMLRRLKKDVLTELPKKTALVIKVPMIPSQAEKYRGLMEDFKKTA 80 (233)
Q Consensus 1 lg~~~~F~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~lRRtk~~~~~~LP~k~e~~v~v~ls~~q~~lY~~~~~~~~~~~ 80 (233)
+|+...|..+|..+... ...+.+..|+.+++|||+||+|.++..+||||.+.+++|.||+.|+++|+.++......+
T Consensus 349 f~s~~~F~~~f~~~~~~---~~~e~i~~L~~~L~pf~LRR~KsdV~~~LPpK~e~iv~v~LS~~Qk~lY~~ll~k~~~~l 425 (1033)
T PLN03142 349 FSSAETFDEWFQISGEN---DQQEVVQQLHKVLRPFLLRRLKSDVEKGLPPKKETILKVGMSQMQKQYYKALLQKDLDVV 425 (1033)
T ss_pred CCCHHHHHHHHcccccc---chHHHHHHHHHHhhHHHhhhhHHHHhhhCCCceeEEEeeCCCHHHHHHHHHHHHHHHHHH
Confidence 57888999999875432 234678899999999999999999999999999999999999999999999988765554
Q ss_pred CCCCCCCCccchhhHHHHHHHHhhccccchhhccchhhHHHHHHhhhcCCCCCCCCchhhhhhhccCCchhhHhhhhccc
Q psy2047 81 NPEGSNRSNEISHMSMFMMLRKMANHPLGLRYYFQENTLREIADCLVEDPTYKGTNPQYILEDISWLSDYDIHQLSLKHK 160 (233)
Q Consensus 81 ~~~~~~~~~~~~~l~~l~~Lr~~c~hp~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (233)
+. ......++.++++||++|+||+++.....
T Consensus 426 ~~----g~~~~~LlnilmqLRk~cnHP~L~~~~ep--------------------------------------------- 456 (1033)
T PLN03142 426 NA----GGERKRLLNIAMQLRKCCNHPYLFQGAEP--------------------------------------------- 456 (1033)
T ss_pred hc----cccHHHHHHHHHHHHHHhCCHHhhhcccc---------------------------------------------
Confidence 32 22345678999999999999998753100
Q ss_pred ccccccccCCchhhhccccHHHHHHHHhHHHhCCCeEEEEechhhHHHHHHHHHHhcCCeEEEeeCCcccCCC
Q psy2047 161 TLDCAKYKVPDDLVVESGKLKKLDEILPDLKKNGHRVLIFSQFIFVLDILGHYMDIRGWRHLRLDGATQVSSR 233 (233)
Q Consensus 161 ~~~~~~~~~~~~~~~~s~Kl~~l~~lL~~~~~~~~KvlIFSq~~~~Ld~l~~~l~~~gi~~~rldG~~~~~~R 233 (233)
.+.+.....++..|+|+.+|..+|..+...|+||||||||+.||++|+.+|...|+.|++|||+|+..+|
T Consensus 457 ---~~~~~~~e~lie~SgKl~lLdkLL~~Lk~~g~KVLIFSQft~~LdiLed~L~~~g~~y~rIdGsts~~eR 526 (1033)
T PLN03142 457 ---GPPYTTGEHLVENSGKMVLLDKLLPKLKERDSRVLIFSQMTRLLDILEDYLMYRGYQYCRIDGNTGGEDR 526 (1033)
T ss_pred ---cCcccchhHHhhhhhHHHHHHHHHHHHHhcCCeEEeehhHHHHHHHHHHHHHHcCCcEEEECCCCCHHHH
Confidence 0011112344567999999999999999999999999999999999999999999999999999997765
No 6
>KOG0392|consensus
Probab=99.96 E-value=4.2e-29 Score=225.17 Aligned_cols=194 Identities=24% Similarity=0.388 Sum_probs=149.5
Q ss_pred CCCchhhhhhhcchhhh---------hhhhhHHHHHHHHHhhhhhhhhcchhhhhhcCCCceEEEEEeeCCHHHHHHHHH
Q psy2047 1 MDSDSEDDARYEDKRKE---------QATFEVEQVDQAKRIISPFMLRRLKKDVLTELPKKTALVIKVPMIPSQAEKYRG 71 (233)
Q Consensus 1 lg~~~~F~~~~~~~~~~---------~~~~~~~~~~~L~~~l~~~~lRRtk~~~~~~LP~k~e~~v~v~ls~~q~~lY~~ 71 (233)
||+.++|..+|.+|+-. +.+-+..+++.||+.+=||||||+|.+++++||||+.+..+|+|+|.|+++|+.
T Consensus 1158 LGtEKqFqsrf~kpI~asRd~K~Sske~EaG~lAleaLHKqVLPF~LRRlKedVL~DLPpKIIQDyyCeLs~lQ~kLY~d 1237 (1549)
T KOG0392|consen 1158 LGTEKQFQSRFGKPILASRDPKSSSKEQEAGVLALEALHKQVLPFLLRRLKEDVLKDLPPKIIQDYYCELSPLQKKLYRD 1237 (1549)
T ss_pred cCcHHHHHHHhcchhhhhcCcccchhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhCChhhhhheeeccCHHHHHHHHH
Confidence 79999999999888764 334556689999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhhcCCC---CCCCC--ccchhhHHHHHHHHhhccccchhhccchhhHHHHHHhhhcCCCCCCCCchhhhhhhcc
Q psy2047 72 LMEDFKKTANPE---GSNRS--NEISHMSMFMMLRKMANHPLGLRYYFQENTLREIADCLVEDPTYKGTNPQYILEDISW 146 (233)
Q Consensus 72 ~~~~~~~~~~~~---~~~~~--~~~~~l~~l~~Lr~~c~hp~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 146 (233)
+.+..+...... +.... ...++|+.|..||++||||.|+.....+.. ..+.+.+.
T Consensus 1238 f~~~~k~~~~~~~d~~~~S~gt~~~HvFqaLqYlrKLcnHpaLvlt~~hp~l-a~i~~~l~------------------- 1297 (1549)
T KOG0392|consen 1238 FVKKAKQCVSSQIDGGEESLGTDKTHVFQALQYLRKLCNHPALVLTPVHPDL-AAIVSHLA------------------- 1297 (1549)
T ss_pred HHHHhccccccccccchhccCcchHHHHHHHHHHHHhcCCcceeeCCCcchH-HHHHHHHH-------------------
Confidence 998844333211 11112 267889999999999999999875311111 11111100
Q ss_pred CCchhhHhhhhcccccccccccCCchhhhccccHHHHHHHHhHHH-h-------------CCCeEEEEechhhHHHHHHH
Q psy2047 147 LSDYDIHQLSLKHKTLDCAKYKVPDDLVVESGKLKKLDEILPDLK-K-------------NGHRVLIFSQFIFVLDILGH 212 (233)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~Kl~~l~~lL~~~~-~-------------~~~KvlIFSq~~~~Ld~l~~ 212 (233)
.+...-..+.+|+|+.+|.++|.++- . .++|+|||+||.+|||+++.
T Consensus 1298 -------------------~~~~~LHdi~hspKl~AL~qLL~eCGig~~~~~~~g~~s~vsqHRiLIFcQlK~mlDlVek 1358 (1549)
T KOG0392|consen 1298 -------------------HFNSSLHDIQHSPKLSALKQLLSECGIGNNSDSEVGTPSDVSQHRILIFCQLKSMLDLVEK 1358 (1549)
T ss_pred -------------------HhhhhHHHhhhchhHHHHHHHHHHhCCCCCCcccccCcchhccceeEEeeeHHHHHHHHHH
Confidence 11111122677999999999999872 1 36899999999999999999
Q ss_pred HHHhc---CCeEEEeeCCcccCCC
Q psy2047 213 YMDIR---GWRHLRLDGATQVSSR 233 (233)
Q Consensus 213 ~l~~~---gi~~~rldG~~~~~~R 233 (233)
-|.+. .+.|.|+||+++..+|
T Consensus 1359 DL~k~~mpsVtymRLDGSVpp~~R 1382 (1549)
T KOG0392|consen 1359 DLFKKYMPSVTYMRLDGSVPPGDR 1382 (1549)
T ss_pred HHhhhhcCceeEEEecCCCCcHHH
Confidence 99664 6789999999999877
No 7
>KOG1015|consensus
Probab=99.96 E-value=1.3e-28 Score=217.45 Aligned_cols=232 Identities=20% Similarity=0.258 Sum_probs=159.4
Q ss_pred CCCchhhhhhhcchhhhhh---------hhhHHHHHHHHHhhhhhhhhcchhhhhhcCCCceEEEEEeeCCHHHHHHHHH
Q psy2047 1 MDSDSEDDARYEDKRKEQA---------TFEVEQVDQAKRIISPFMLRRLKKDVLTELPKKTALVIKVPMIPSQAEKYRG 71 (233)
Q Consensus 1 lg~~~~F~~~~~~~~~~~~---------~~~~~~~~~L~~~l~~~~lRRtk~~~~~~LP~k~e~~v~v~ls~~q~~lY~~ 71 (233)
||+-++|.++|++|++++. .++..+.+.|+..|+.|+.|+....+-..||||+++||.|.||+.|.+||+.
T Consensus 879 LGs~~EfrNRFvNpI~nGq~~dST~~DVr~Mk~RsHILye~LkgcVqRkDy~Vltk~LPPK~eyVi~vrltelQ~~LYq~ 958 (1567)
T KOG1015|consen 879 LGSIKEFRNRFVNPIQNGQCADSTMVDVRVMKKRSHILYEMLKGCVQRKDYTVLTKFLPPKHEYVIAVRLTELQCKLYQY 958 (1567)
T ss_pred ccCcHHHHHhhcCccccCccCCCcHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccCCCceeEEEEEeccHHHHHHHHH
Confidence 7999999999999999876 4557889999999999999999999988999999999999999999999999
Q ss_pred HHHHHhhhcCCCCCCCCccchhhHHHHHHHHhhccccchhhccchhhHHHHHH-----hhhcCCCCC-------------
Q psy2047 72 LMEDFKKTANPEGSNRSNEISHMSMFMMLRKMANHPLGLRYYFQENTLREIAD-----CLVEDPTYK------------- 133 (233)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~l~~l~~Lr~~c~hp~l~~~~~~~~~~~~~~~-----~~~~~~~~~------------- 133 (233)
++++....-+......+....+|+.+..|++|++||++++-..+......... .+..+...+
T Consensus 959 yL~h~~~~G~d~eg~~g~~arlf~dfqmlsrIwtHP~~lqL~s~~~enkR~~seddm~~fi~D~sde~e~s~~s~d~~~~ 1038 (1567)
T KOG1015|consen 959 YLDHLTGVGNDSEGGRGAGARLFQDFQMLSRIWTHPWCLQLDSISKENKRYFSEDDMDEFIADDSDETEMSLSSDDYTKK 1038 (1567)
T ss_pred HHhhccccCCccccccchhhhHHHHHHHHHHHhcCCCceeechhhhhhcccccccchhccccCCCccccccccccchhhc
Confidence 99944333333333444667889999999999999998873222111111110 111010000
Q ss_pred ---------CCCchhhhhhh--c---------------------cCCchhhHhhhhcccccccc----------cc--cC
Q psy2047 134 ---------GTNPQYILEDI--S---------------------WLSDYDIHQLSLKHKTLDCA----------KY--KV 169 (233)
Q Consensus 134 ---------~~~~~~~~~~~--~---------------------~~~~~~~~~~~~~~~~~~~~----------~~--~~ 169 (233)
+.+......+. . .-++..+. +..+..+.+.. ++ ..
T Consensus 1039 ~ks~~~s~~Desss~~~~~g~~ev~k~k~rk~r~~~~~~~~~~g~~~D~~l~-ll~dlag~~s~~~d~ppew~kd~v~e~ 1117 (1567)
T KOG1015|consen 1039 KKSGKKSKKDESSSGSGSDGDVEVIKVKNRKSRGGGEGNVDETGNNPDVSLK-LLEDLAGSSSNPSDPPPEWYKDFVTEA 1117 (1567)
T ss_pred ccccccccccccccccccCCchhhhhhhhhhccccccCcccccCCCcchHHH-HhhcccccccCCCCCchHhHHhhhhhh
Confidence 00000000000 0 00011000 00110011110 11 11
Q ss_pred CchhhhccccHHHHHHHHhHHHhCCCeEEEEechhhHHHHHHHHHHh----------------------cCCeEEEeeCC
Q psy2047 170 PDDLVVESGKLKKLDEILPDLKKNGHRVLIFSQFIFVLDILGHYMDI----------------------RGWRHLRLDGA 227 (233)
Q Consensus 170 ~~~~~~~s~Kl~~l~~lL~~~~~~~~KvlIFSq~~~~Ld~l~~~l~~----------------------~gi~~~rldG~ 227 (233)
......+|+||.+|++||..+.+-|+|+|||||+..+||+|+.+|.. .|..|.||||+
T Consensus 1118 d~~v~~~SgKmiLLleIL~mceeIGDKlLVFSQSL~SLdLIe~fLe~v~r~gk~~~d~~~~~~~eGkW~~GkDyyriDGs 1197 (1567)
T KOG1015|consen 1118 DAEVLEHSGKMILLLEILRMCEEIGDKLLVFSQSLISLDLIEDFLELVSREGKEDKDKPLIYKGEGKWLRGKDYYRLDGS 1197 (1567)
T ss_pred hhhhhhcCcceehHHHHHHHHHHhcceeEEeecccchhHHHHHHHHhhcccCccccccccccccccceecCCceEEecCc
Confidence 23557779999999999999999999999999999999999999963 47899999999
Q ss_pred cccCCC
Q psy2047 228 TQVSSR 233 (233)
Q Consensus 228 ~~~~~R 233 (233)
+...+|
T Consensus 1198 t~s~~R 1203 (1567)
T KOG1015|consen 1198 TTSQSR 1203 (1567)
T ss_pred ccHHHH
Confidence 987665
No 8
>KOG0386|consensus
Probab=99.95 E-value=4e-28 Score=215.78 Aligned_cols=184 Identities=34% Similarity=0.491 Sum_probs=152.3
Q ss_pred CCchhhhhhhcchhhhhhh-------hhHHHHHHHHHhhhhhhhhcchhhhhhcCCCceEEEEEeeCCHHHHHHHHHHHH
Q psy2047 2 DSDSEDDARYEDKRKEQAT-------FEVEQVDQAKRIISPFMLRRLKKDVLTELPKKTALVIKVPMIPSQAEKYRGLME 74 (233)
Q Consensus 2 g~~~~F~~~~~~~~~~~~~-------~~~~~~~~L~~~l~~~~lRRtk~~~~~~LP~k~e~~v~v~ls~~q~~lY~~~~~ 74 (233)
.|.+.|..||..|+.+... ..--.+++||.+++||+|||.|+++..+||.|+++|+.|.||..|+.+|..+.+
T Consensus 575 nS~~~FeqWFN~PFantGek~eLteEEtlLIIrRLHkVLRPFlLRRlKkeVE~~LPdKve~viKC~mSalQq~lY~~m~~ 654 (1157)
T KOG0386|consen 575 NSCKAFEQWFNQPFANTGEKVELTEEETLLIIRRLHKVLRPFLLRRLKKEVEQELPDKVEDVIKCDMSALQQSLYKQMQN 654 (1157)
T ss_pred hhHhHHHHHhhhhhhhcCCcccccchHHHHHHHHHHHhhhHHHHHhhhHHHhhhCchhhhHhhheehhhhhHhhhHHHHh
Confidence 4678999999999988551 112247999999999999999999999999999999999999999999999987
Q ss_pred HHhhhcCCCCCCCCccchhhHHHHHHHHhhccccchhhccchhhHHHHHHhhhcCCCCCCCCchhhhhhhccCCchhhHh
Q psy2047 75 DFKKTANPEGSNRSNEISHMSMFMMLRKMANHPLGLRYYFQENTLREIADCLVEDPTYKGTNPQYILEDISWLSDYDIHQ 154 (233)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~l~~l~~Lr~~c~hp~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (233)
.-.-.... ....+++.+.+..++.||++||||+++...-.
T Consensus 655 ~g~l~~d~-~~g~~g~k~L~N~imqLRKiCNHP~lf~~ve~--------------------------------------- 694 (1157)
T KOG0386|consen 655 KGQLLKDT-AKGKKGYKPLFNTIMQLRKLCNHPYLFANVEN--------------------------------------- 694 (1157)
T ss_pred CCCCCcCc-hhccccchhhhhHhHHHHHhcCCchhhhhhcc---------------------------------------
Confidence 65433322 33556677888999999999999999842100
Q ss_pred hhhcccccccccccCCchhhhccccHHHHHHHHhHHHhCCCeEEEEechhhHHHHHHHHHHhcCCeEEEeeCCcccCCC
Q psy2047 155 LSLKHKTLDCAKYKVPDDLVVESGKLKKLDEILPDLKKNGHRVLIFSQFIFVLDILGHYMDIRGWRHLRLDGATQVSSR 233 (233)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~s~Kl~~l~~lL~~~~~~~~KvlIFSq~~~~Ld~l~~~l~~~gi~~~rldG~~~~~~R 233 (233)
+|.....+..++..|||+.+|..+|.++.+.|++|+.|+|.|.++++++.+|.-.++.|.|+||+|...+|
T Consensus 695 --------~~~~~~~~~dL~R~sGKfELLDRiLPKLkatgHRVLlF~qMTrlmdimEdyL~~~~~kYlRLDG~TK~~eR 765 (1157)
T KOG0386|consen 695 --------SYTLHYDIKDLVRVSGKFELLDRILPKLKATGHRVLLFSQMTRLMDILEDYLQIREYKYLRLDGQTKVEER 765 (1157)
T ss_pred --------ccccccChhHHHHhccHHHHHHhhhHHHHhcCcchhhHHHHHHHHHHHHHHHhhhhhheeeecCCcchhhH
Confidence 00011112456788999999999999999999999999999999999999999999999999999998876
No 9
>KOG0391|consensus
Probab=99.95 E-value=9.2e-28 Score=215.40 Aligned_cols=107 Identities=26% Similarity=0.405 Sum_probs=92.7
Q ss_pred CCchhhhhhhcchhhh----hhhhhHHHHHHHHHhhhhhhhhcchhhhhhcCCCceEEEEEeeCCHHHHHHHHHHHHHHh
Q psy2047 2 DSDSEDDARYEDKRKE----QATFEVEQVDQAKRIISPFMLRRLKKDVLTELPKKTALVIKVPMIPSQAEKYRGLMEDFK 77 (233)
Q Consensus 2 g~~~~F~~~~~~~~~~----~~~~~~~~~~~L~~~l~~~~lRRtk~~~~~~LP~k~e~~v~v~ls~~q~~lY~~~~~~~~ 77 (233)
-|...|+.||.+|... ..+.+..-+.+||+.++||+|||+|.++.++||.|+|+||.|.||..||.||+.|+....
T Consensus 796 ~shd~fk~wfsnPltgmiEgsqeyn~klV~RLHkVlrPfiLRRlK~dVEKQlpkKyEHvv~CrLSkRQR~LYDDfmsq~~ 875 (1958)
T KOG0391|consen 796 ASHDIFKPWFSNPLTGMIEGSQEYNHKLVIRLHKVLRPFILRRLKRDVEKQLPKKYEHVVKCRLSKRQRALYDDFMSQPG 875 (1958)
T ss_pred hhhhhHHHHhcCcchhhcccchhhchHHHHHHHHHhHHHHHHHHHHHHHHhcchhhhhheeeehhhhHHHHHHHHhhccc
Confidence 4678999999998664 445667789999999999999999999999999999999999999999999999988754
Q ss_pred hhcCCCCCCCCccchhhHHHHHHHHhhccccchh
Q psy2047 78 KTANPEGSNRSNEISHMSMFMMLRKMANHPLGLR 111 (233)
Q Consensus 78 ~~~~~~~~~~~~~~~~l~~l~~Lr~~c~hp~l~~ 111 (233)
.+-. -.+++..+++.++++||++||||.|+-
T Consensus 876 TKet---LkSGhfmsVlnilmqLrKvCNHPnLfE 906 (1958)
T KOG0391|consen 876 TKET---LKSGHFMSVLNILMQLRKVCNHPNLFE 906 (1958)
T ss_pred hhhH---hhcCchhHHHHHHHHHHHHcCCCCcCC
Confidence 3322 145788899999999999999999875
No 10
>KOG0388|consensus
Probab=99.94 E-value=4.6e-27 Score=202.95 Aligned_cols=221 Identities=29% Similarity=0.461 Sum_probs=149.6
Q ss_pred CCCchhhhhhhcchhhhh----hhhhHHHHHHHHHhhhhhhhhcchhhhhhcCCCceEEEEEeeCCHHHHHHHHHHHHHH
Q psy2047 1 MDSDSEDDARYEDKRKEQ----ATFEVEQVDQAKRIISPFMLRRLKKDVLTELPKKTALVIKVPMIPSQAEKYRGLMEDF 76 (233)
Q Consensus 1 lg~~~~F~~~~~~~~~~~----~~~~~~~~~~L~~~l~~~~lRRtk~~~~~~LP~k~e~~v~v~ls~~q~~lY~~~~~~~ 76 (233)
++|..+|.+||.+.+++- ...+++.+.+||.+|+||||||.|.++..+|-.|++..|+|+||..|+.+|+.+....
T Consensus 753 FDshneFseWFSKdIEshAe~~~tlneqqL~RLH~ILKPFMLRRvKkdV~sELg~Kteidv~CdLs~RQ~~lYq~ik~~i 832 (1185)
T KOG0388|consen 753 FDSHNEFSEWFSKDIESHAEMNTTLNEQQLQRLHAILKPFMLRRVKKDVISELGQKTEIDVYCDLSYRQKVLYQEIKRSI 832 (1185)
T ss_pred hhchHHHHHHHhhhhHhHHHhcCCcCHHHHHHHHHHHhHHHHHHHHHHHHHHhccceEEEEEechhHHHHHHHHHHHHHh
Confidence 468899999999998864 3566899999999999999999999999999999999999999999999999998754
Q ss_pred hhhcCCCCCCCCccchhhHHHHHHHHhhccccchhhccc---------------------------hhh-----------
Q psy2047 77 KKTANPEGSNRSNEISHMSMFMMLRKMANHPLGLRYYFQ---------------------------ENT----------- 118 (233)
Q Consensus 77 ~~~~~~~~~~~~~~~~~l~~l~~Lr~~c~hp~l~~~~~~---------------------------~~~----------- 118 (233)
. ..-...++++||++||||.|+..... +..
T Consensus 833 S------------~~E~~~~vmQlrKVCNHPdLFer~e~~s~L~~~V~~nl~dv~S~Grnpi~ykiP~L~~~d~le~~~f 900 (1185)
T KOG0388|consen 833 S------------SMEMENLVMQLRKVCNHPDLFERLEPRSGLSLEVSDNLGDVVSFGRNPIDYKIPSLVAKDALEMFRF 900 (1185)
T ss_pred h------------HHHHHHHHHHHHHhcCChHHHhhcCCcceeEEEcccCHHHHHhCCCCceeecchHHHHHHHHHHHHH
Confidence 4 12234589999999999999861100 000
Q ss_pred --------HHHHHHhhhcCCCC--C------CCCchhhh---hhhc------------cCCc--------hhhHhhh---
Q psy2047 119 --------LREIADCLVEDPTY--K------GTNPQYIL---EDIS------------WLSD--------YDIHQLS--- 156 (233)
Q Consensus 119 --------~~~~~~~~~~~~~~--~------~~~~~~~~---~~~~------------~~~~--------~~~~~~~--- 156 (233)
+..+...+..++.. . ......++ +... +..+ ....-.+
T Consensus 901 niye~i~~~~g~~~~v~Geg~~~w~~~l~~e~k~G~~~~~n~e~~~Kavtr~ll~p~~~~~e~~~rvi~~e~~~L~~~~y 980 (1185)
T KOG0388|consen 901 NIYEMIERINGLRRIVNGEGPNAWYLRLSLEFKYGGYVFRNVEEAGKAVTRNLLNPESSLLESMRRVIDEEAYRLQRHVY 980 (1185)
T ss_pred hHHHHHHHHhhhHhhhcCCCcchhcccceeeeccCCcccccHHHHHHHHHHHhcCcccchhHHHHHHhhHHHHHhhhhee
Confidence 00000011111100 0 00000000 0000 0000 0000000
Q ss_pred ----------------hccccccccc--------ccCC--chhhhccccHHHHHHHHhHHHhCCCeEEEEechhhHHHHH
Q psy2047 157 ----------------LKHKTLDCAK--------YKVP--DDLVVESGKLKKLDEILPDLKKNGHRVLIFSQFIFVLDIL 210 (233)
Q Consensus 157 ----------------~~~~~~~~~~--------~~~~--~~~~~~s~Kl~~l~~lL~~~~~~~~KvlIFSq~~~~Ld~l 210 (233)
.+.+.++... +..| ...+..|+|+..|.++|.++...|++||+|-|.+.|+|+|
T Consensus 981 ~y~P~v~apPvLI~~ead~PeId~E~~~~pLn~~i~~Ppm~~FitdSgKL~~LDeLL~kLkaegHRvL~yfQMTkM~dl~ 1060 (1185)
T KOG0388|consen 981 CYSPVVAAPPVLISNEADLPEIDLENRHIPLNTTIYVPPMNTFITDSGKLVVLDELLPKLKAEGHRVLMYFQMTKMIDLI 1060 (1185)
T ss_pred eeccccCCCCeeeecccCCCCCCccccCcccccceecCcHHhhhccccceeeHHHHHHHhhcCCceEEehhHHHHHHHHH
Confidence 0000000000 0011 2347789999999999999999999999999999999999
Q ss_pred HHHHHhcCCeEEEeeCCcccCCC
Q psy2047 211 GHYMDIRGWRHLRLDGATQVSSR 233 (233)
Q Consensus 211 ~~~l~~~gi~~~rldG~~~~~~R 233 (233)
+.+|..+|+.|+||||+....+|
T Consensus 1061 EdYl~yr~Y~ylRLDGSsk~~dR 1083 (1185)
T KOG0388|consen 1061 EDYLVYRGYTYLRLDGSSKASDR 1083 (1185)
T ss_pred HHHHHhhccceEEecCcchhhHH
Confidence 99999999999999999877654
No 11
>KOG1002|consensus
Probab=99.91 E-value=2e-24 Score=180.61 Aligned_cols=222 Identities=19% Similarity=0.223 Sum_probs=146.9
Q ss_pred hhhhhcchhhhhh--hhhHHHHHHHHHhhhhhhhhcchhhhhh--cCCCceEEEEEeeCCHHHHHHHHHHHHHHhhhcCC
Q psy2047 7 DDARYEDKRKEQA--TFEVEQVDQAKRIISPFMLRRLKKDVLT--ELPKKTALVIKVPMIPSQAEKYRGLMEDFKKTANP 82 (233)
Q Consensus 7 F~~~~~~~~~~~~--~~~~~~~~~L~~~l~~~~lRRtk~~~~~--~LP~k~e~~v~v~ls~~q~~lY~~~~~~~~~~~~~ 82 (233)
|++..-.|++... ..+..+....+.+++.+||||||-.... .|||+.+.+..=-|+++|.++|+.++..++..++.
T Consensus 411 ~n~~mlk~IqkfG~eGpGk~af~~~h~llk~ImlrrTkl~RAdDLgLPPRiv~vRrD~fn~eE~D~YeSLY~dSkrkfnt 490 (791)
T KOG1002|consen 411 FNHFMLKPIQKFGVEGPGKEAFNNIHTLLKNIMLRRTKLERADDLGLPPRIVTVRRDFFNEEEKDLYESLYKDSKRKFNT 490 (791)
T ss_pred hcccccccchhhcccCchHHHHHHHHHHHHHHHHHHhhcccccccCCCccceeeehhhhhhHHHHHHHHHHHhhHHhhhh
Confidence 3344445555432 3346677789999999999999965333 59999999999999999999999999999988874
Q ss_pred CCC---CCCccchhhHHHHHHHHhhccccchhhccchh----hHH----HHHHhhhcCCCCCCCCchhhhhhhccCCchh
Q psy2047 83 EGS---NRSNEISHMSMFMMLRKMANHPLGLRYYFQEN----TLR----EIADCLVEDPTYKGTNPQYILEDISWLSDYD 151 (233)
Q Consensus 83 ~~~---~~~~~~~~l~~l~~Lr~~c~hp~l~~~~~~~~----~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (233)
... ...+|+++|.++++|||+.+||+|+...-... ... +++..-.+|.......+..+.--. .+
T Consensus 491 yieeGvvlNNYAnIF~LitRmRQ~aDHP~LVl~S~~~n~~~enk~~~~C~lc~d~aed~i~s~ChH~FCrlCi-----~e 565 (791)
T KOG1002|consen 491 YIEEGVVLNNYANIFTLITRMRQAADHPDLVLYSANANLPDENKGEVECGLCHDPAEDYIESSCHHKFCRLCI-----KE 565 (791)
T ss_pred HHhhhhhhhhHHHHHHHHHHHHHhccCcceeeehhhcCCCccccCceeecccCChhhhhHhhhhhHHHHHHHH-----HH
Confidence 333 55789999999999999999999987421110 000 111111111000000000000000 00
Q ss_pred hHhhhhcccccccc--------------------------c--ccCCchhhhccccHHHHHHHHhHHHhCC--CeEEEEe
Q psy2047 152 IHQLSLKHKTLDCA--------------------------K--YKVPDDLVVESGKLKKLDEILPDLKKNG--HRVLIFS 201 (233)
Q Consensus 152 ~~~~~~~~~~~~~~--------------------------~--~~~~~~~~~~s~Kl~~l~~lL~~~~~~~--~KvlIFS 201 (233)
.-..........|| . ...+-..|..|+|+.+|.+-|.-+.+++ -|.||||
T Consensus 566 yv~~f~~~~nvtCP~C~i~LsiDlse~alek~~l~~Fk~sSIlnRinm~~~qsSTKIEAL~EEl~~l~~rd~t~KsIVFS 645 (791)
T KOG1002|consen 566 YVESFMENNNVTCPVCHIGLSIDLSEPALEKTDLKGFKASSILNRINMDDWQSSTKIEALVEELYFLRERDRTAKSIVFS 645 (791)
T ss_pred HHHhhhcccCCCCccccccccccccchhhhhcchhhhhhHHHhhhcchhhhcchhHHHHHHHHHHHHHHcccchhhhhHH
Confidence 00000000011111 0 0112235888999999999999887764 3999999
Q ss_pred chhhHHHHHHHHHHhcCCeEEEeeCCcccCCC
Q psy2047 202 QFIFVLDILGHYMDIRGWRHLRLDGATQVSSR 233 (233)
Q Consensus 202 q~~~~Ld~l~~~l~~~gi~~~rldG~~~~~~R 233 (233)
||++|||+|+..|.+.|+.++.|+|+|+.+.|
T Consensus 646 QFTSmLDLi~~rL~kaGfscVkL~GsMs~~ar 677 (791)
T KOG1002|consen 646 QFTSMLDLIEWRLGKAGFSCVKLVGSMSPAAR 677 (791)
T ss_pred HHHHHHHHHHHHhhccCceEEEeccCCChHHH
Confidence 99999999999999999999999999998765
No 12
>KOG0383|consensus
Probab=99.88 E-value=5.7e-23 Score=181.07 Aligned_cols=163 Identities=34% Similarity=0.483 Sum_probs=132.3
Q ss_pred hhhHHHHHHHHHhhhhhhhhcchhhhhhcCCCceEEEEEeeCCHHHHHHHHHHHHHHhhhcCCCCCCCCccchhhHHHHH
Q psy2047 20 TFEVEQVDQAKRIISPFMLRRLKKDVLTELPKKTALVIKVPMIPSQAEKYRGLMEDFKKTANPEGSNRSNEISHMSMFMM 99 (233)
Q Consensus 20 ~~~~~~~~~L~~~l~~~~lRRtk~~~~~~LP~k~e~~v~v~ls~~q~~lY~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~ 99 (233)
...+++.+.|+.++.|.||||.|.+++.+.|+|++-++.+.|++.|+++|+.++..--..++. .....+.+.+++.
T Consensus 507 ~~~~~~~~~l~~l~~p~~lrr~k~d~l~~~P~Kte~i~~~~~~~~Q~~~yk~~~t~n~~~l~~----~~~~~s~~n~~me 582 (696)
T KOG0383|consen 507 ISCEEQIKKLHLLLCPHMLRRLKLDVLKPMPLKTELIGRVELSPCQKKYYKKILTRNWQGLLA----GVHQYSLLNIVME 582 (696)
T ss_pred hhHHHHHHhhccccCchhhhhhhhhhccCCCccceeEEEEecCHHHHHHHHHHHcCChHHHhh----cchhHHHHHHHHH
Confidence 334678899999999999999999999999999999999999999999999998764444432 2334556789999
Q ss_pred HHHhhccccchhhccchhhHHHHHHhhhcCCCCCCCCchhhhhhhccCCchhhHhhhhcccccccccccCCchhhhcccc
Q psy2047 100 LRKMANHPLGLRYYFQENTLREIADCLVEDPTYKGTNPQYILEDISWLSDYDIHQLSLKHKTLDCAKYKVPDDLVVESGK 179 (233)
Q Consensus 100 Lr~~c~hp~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~K 179 (233)
||+.|+||+++... +..... .......++..|+|
T Consensus 583 l~K~~~hpy~~~~~-e~~~~~---------------------------------------------~~~~~~~l~k~~~k 616 (696)
T KOG0383|consen 583 LRKQCNHPYLSPLE-EPLEEN---------------------------------------------GEYLGSALIKASGK 616 (696)
T ss_pred HHHhhcCcccCccc-cccccc---------------------------------------------hHHHHHHHHHHHHH
Confidence 99999999998531 000000 00001234677999
Q ss_pred HHHHHHHHhHHHhCCCeEEEEechhhHHHHHHHHHHhcCCeEEEeeCCcccCCC
Q psy2047 180 LKKLDEILPDLKKNGHRVLIFSQFIFVLDILGHYMDIRGWRHLRLDGATQVSSR 233 (233)
Q Consensus 180 l~~l~~lL~~~~~~~~KvlIFSq~~~~Ld~l~~~l~~~gi~~~rldG~~~~~~R 233 (233)
+..|..+++++...|+||+||||++.+||+|+.++...| .|.|+||......|
T Consensus 617 ~~~l~~~~~~l~~~ghrvl~~~q~~~~ldlled~~~~~~-~~~r~dG~~~~~~r 669 (696)
T KOG0383|consen 617 LTLLLKMLKKLKSSGHRVLIFSQMIHMLDLLEDYLTYEG-KYERIDGPITGPER 669 (696)
T ss_pred HHHHHHHHHHHHhcchhhHHHHHHHHHHHHhHHHHhccC-cceeccCCccchhh
Confidence 999999999999999999999999999999999999999 99999999876554
No 13
>KOG4439|consensus
Probab=99.88 E-value=1.4e-22 Score=175.27 Aligned_cols=202 Identities=19% Similarity=0.188 Sum_probs=136.0
Q ss_pred HHHHHHHHhhhhhhhhcchhhhhh-----cCCCceEEEEEeeCCHHHHHHHHHHHHHHhhhcCC----------------
Q psy2047 24 EQVDQAKRIISPFMLRRLKKDVLT-----ELPKKTALVIKVPMIPSQAEKYRGLMEDFKKTANP---------------- 82 (233)
Q Consensus 24 ~~~~~L~~~l~~~~lRRtk~~~~~-----~LP~k~e~~v~v~ls~~q~~lY~~~~~~~~~~~~~---------------- 82 (233)
...++|+-++++.||||||+++.. +||++...++.++|+..|...|+.+.+.++..+..
T Consensus 537 ~g~~rlnll~K~LmLRRTKdQl~a~~klv~Lp~k~i~l~~leLs~~E~~vY~i~~~askk~~kq~L~~~e~~~~~~~~~s 616 (901)
T KOG4439|consen 537 GGANRLNLLTKSLMLRRTKDQLQANGKLVNLPEKNIELHELELSGDEAKVYQIMMEASKKLFKQFLLQREDRNNDGGYQS 616 (901)
T ss_pred cchhhhhhhhhhHHhhhhHHhhccccccccCcccceEEEEEeecchHHHHHHHHHHHHHHHHHHHHHhhhhhccccCccc
Confidence 345789999999999999999876 69999999999999999999999998876654411
Q ss_pred -----------------------CCCCCCccchhhHHHHHHHHhhccccchhhccchhhHHHHHHhhhcCCCCCCCCchh
Q psy2047 83 -----------------------EGSNRSNEISHMSMFMMLRKMANHPLGLRYYFQENTLREIADCLVEDPTYKGTNPQY 139 (233)
Q Consensus 83 -----------------------~~~~~~~~~~~l~~l~~Lr~~c~hp~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 139 (233)
++.+.....++|.+|++|||+|+||.++....+............++. .....
T Consensus 617 ~~~~~~~~~e~~~~~~~~pR~~aagsn~~~~s~IL~LLlrLRQ~ccH~~~~k~~ld~~~~~~~g~~~sde~----~~e~~ 692 (901)
T KOG4439|consen 617 RNRFIGGHDEFGNYYNIGPRFLAAGSNFEIMSHILVLLLRLRQACCHFGLLKAALDPEEFQMNGGDDSDEE----QLEED 692 (901)
T ss_pred cchhccccccccccccccchhhhcCCchhhHHHHHHHHHHHHHHhcCcchhccccCHHHhhhcCcchhhhh----hhhhh
Confidence 111122234579999999999999988876655444332111100000 00000
Q ss_pred hhhhhccCCchhhHhhhhcccccccccc-cC-CchhhhccccHHHHHHHHhHH-HhCCCeEEEEechhhHHHHHHHHHHh
Q psy2047 140 ILEDISWLSDYDIHQLSLKHKTLDCAKY-KV-PDDLVVESGKLKKLDEILPDL-KKNGHRVLIFSQFIFVLDILGHYMDI 216 (233)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~s~Kl~~l~~lL~~~-~~~~~KvlIFSq~~~~Ld~l~~~l~~ 216 (233)
.+....... ...|.+..+-+-|.. .. -.+....|+|+..++++|+++ ...++|+||.|||+++|++++..|++
T Consensus 693 ~l~el~k~~----~T~~~~D~~ed~p~~~~~q~Fe~~r~S~Ki~~~l~~le~i~~~skeK~viVSQwtsvLniv~~hi~~ 768 (901)
T KOG4439|consen 693 NLAELEKND----ETDCSDDNCEDLPTAFPDQAFEPDRPSCKIAMVLEILETILTSSKEKVVIVSQWTSVLNIVRKHIQK 768 (901)
T ss_pred HHHhhhhcc----cccccccccccccccchhhhcccccchhHHHHHHHHHHHHhhcccceeeehhHHHHHHHHHHHHHhh
Confidence 000000000 000000000000111 00 024456799999999999998 45578999999999999999999999
Q ss_pred cCCeEEEeeCCcccCCC
Q psy2047 217 RGWRHLRLDGATQVSSR 233 (233)
Q Consensus 217 ~gi~~~rldG~~~~~~R 233 (233)
.|+.|..|+|.+.+++|
T Consensus 769 ~g~~y~si~Gqv~vK~R 785 (901)
T KOG4439|consen 769 GGHIYTSITGQVLVKDR 785 (901)
T ss_pred CCeeeeeecCccchhHH
Confidence 99999999999999876
No 14
>KOG0390|consensus
Probab=99.88 E-value=4.4e-22 Score=176.99 Aligned_cols=192 Identities=26% Similarity=0.355 Sum_probs=142.1
Q ss_pred CCCchhhhhhhcchhhhhhh--------hhHHHHHHHHHhhhhhhhhcchhhhhhcCCCceEEEEEeeCCHHHHHHHHHH
Q psy2047 1 MDSDSEDDARYEDKRKEQAT--------FEVEQVDQAKRIISPFMLRRLKKDVLTELPKKTALVIKVPMIPSQAEKYRGL 72 (233)
Q Consensus 1 lg~~~~F~~~~~~~~~~~~~--------~~~~~~~~L~~~l~~~~lRRtk~~~~~~LP~k~e~~v~v~ls~~q~~lY~~~ 72 (233)
||+...|++.|..|+..... ...+++.+|+.++..|++|||-+.+...||+|+|+||+|.+|+.|+++|+.+
T Consensus 434 Lgs~~sf~k~~~~~i~~~~~~~~s~e~~~~~~rl~eL~~~t~~fi~rrt~~il~k~LP~k~e~vv~~n~t~~Q~~~~~~l 513 (776)
T KOG0390|consen 434 LGSISSFKKKFEIPILRGRDADASEEDREREERLQELRELTNKFILRRTGDILLKYLPGKYEYVVFCNPTPIQKELYKKL 513 (776)
T ss_pred ccchHHHHHHhhcccccccCCCcchhhhhhHHHHHHHHHHHHhheeecccchhhhhCCCceeEEEEeCCcHHHHHHHHHH
Confidence 79999999999888776331 1145589999999999999999888888999999999999999999999999
Q ss_pred HHHHhhhcCCCCCCCCccchhhHHHHHHHHhhccccchhhccchhhHHHHHHhhhcCCCCCCCCchhhhhhhccCCchhh
Q psy2047 73 MEDFKKTANPEGSNRSNEISHMSMFMMLRKMANHPLGLRYYFQENTLREIADCLVEDPTYKGTNPQYILEDISWLSDYDI 152 (233)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~~~l~~l~~Lr~~c~hp~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (233)
.+.. ... ......|..++.|.++||||.|+.... ...++..+. .....
T Consensus 514 ~~~~-~~~-------~~~~~~l~~~~~L~k~cnhP~L~~~~~----------~~~~e~~~~--~~~~~------------ 561 (776)
T KOG0390|consen 514 LDSM-KMR-------TLKGYALELITKLKKLCNHPSLLLLCE----------KTEKEKAFK--NPALL------------ 561 (776)
T ss_pred HHHH-Hhh-------hhhcchhhHHHHHHHHhcCHHhhcccc----------ccccccccc--ChHhh------------
Confidence 9874 111 122337899999999999999985100 000000000 00000
Q ss_pred HhhhhcccccccccccCCchhhhccccHHHHHHHHhHHHhC-CCeEEEEechhhHHHHHHHHHHhcCCeEEEeeCCcccC
Q psy2047 153 HQLSLKHKTLDCAKYKVPDDLVVESGKLKKLDEILPDLKKN-GHRVLIFSQFIFVLDILGHYMDIRGWRHLRLDGATQVS 231 (233)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~s~Kl~~l~~lL~~~~~~-~~KvlIFSq~~~~Ld~l~~~l~~~gi~~~rldG~~~~~ 231 (233)
..-............|+|+..|+.++....+. .+|+++.|+|+.+||+++.++..+|+.++||||+|+.+
T Consensus 562 ---------~~~~~~~~~~~~~~ks~kl~~L~~ll~~~~ek~~~~~v~Isny~~tldl~e~~~~~~g~~~~rLdG~~~~~ 632 (776)
T KOG0390|consen 562 ---------LDPGKLKLDAGDGSKSGKLLVLVFLLEVIREKLLVKSVLISNYTQTLDLFEQLCRWRGYEVLRLDGKTSIK 632 (776)
T ss_pred ---------hcccccccccccchhhhHHHHHHHHHHHHhhhcceEEEEeccHHHHHHHHHHHHhhcCceEEEEcCCCchH
Confidence 00001111112223489999999999776655 56999999999999999999999999999999999998
Q ss_pred CC
Q psy2047 232 SR 233 (233)
Q Consensus 232 ~R 233 (233)
+|
T Consensus 633 qR 634 (776)
T KOG0390|consen 633 QR 634 (776)
T ss_pred HH
Confidence 87
No 15
>COG0553 HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair]
Probab=99.87 E-value=5.2e-22 Score=185.29 Aligned_cols=198 Identities=31% Similarity=0.464 Sum_probs=149.3
Q ss_pred CC-Cchhhhhhhcchhhhhhhh-----hHHHHHHHHHhhhhhhhhcchhh--hhhcCCCceEEEEEeeCCHHHHHHHHHH
Q psy2047 1 MD-SDSEDDARYEDKRKEQATF-----EVEQVDQAKRIISPFMLRRLKKD--VLTELPKKTALVIKVPMIPSQAEKYRGL 72 (233)
Q Consensus 1 lg-~~~~F~~~~~~~~~~~~~~-----~~~~~~~L~~~l~~~~lRRtk~~--~~~~LP~k~e~~v~v~ls~~q~~lY~~~ 72 (233)
+| +...|..+|..+....... ....+..|+.+++||+|||+|.+ +..+||+|.+.++.|.|++.|+++|..+
T Consensus 531 ~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~f~lrr~k~~~~v~~~Lp~k~e~~~~~~l~~~q~~~y~~~ 610 (866)
T COG0553 531 LGTSFAIFTRLFEKPIQAEEDIGPLEARELGIELLRKLLSPFILRRTKEDVEVLKELPPKIEKVLECELSEEQRELYEAL 610 (866)
T ss_pred ccchHHHHHHHHhhhhhhcccccchhhHHHHHHHHHHHHHHHhhcccccchhHHHhCChhhhhhhhhcccHHHHHHHHHH
Confidence 35 4688999999999887652 34556669999999999999999 8889999999999999999999999999
Q ss_pred HH---HHhhhcCCCCCCCC-------ccchhhHHHHHHHHhhccccchhhccchhhHHHHHHhhhcCCCCCCCCchhhhh
Q psy2047 73 ME---DFKKTANPEGSNRS-------NEISHMSMFMMLRKMANHPLGLRYYFQENTLREIADCLVEDPTYKGTNPQYILE 142 (233)
Q Consensus 73 ~~---~~~~~~~~~~~~~~-------~~~~~l~~l~~Lr~~c~hp~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 142 (233)
.. .....+........ ....++..+++||++|+||.++....+... ...
T Consensus 611 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~lr~~~~~p~l~~~~~~~~~-~~~-------------------- 669 (866)
T COG0553 611 LEGAEKNQQLLEDLEKADSDENRIGDSELNILALLTRLRQICNHPALVDEGLEATF-DRI-------------------- 669 (866)
T ss_pred HHHHHHHHHHHHHHHhhccccccccchhhHHHHHHHHHHHhccCcccccccccccc-chh--------------------
Confidence 98 43333322111111 267889999999999999999864310000 000
Q ss_pred hhccCCchhhHhhhhcccccccccccCCchhhhcc-ccHHHHHHHH-hHHHhCCC--eEEEEechhhHHHHHHHHHHhcC
Q psy2047 143 DISWLSDYDIHQLSLKHKTLDCAKYKVPDDLVVES-GKLKKLDEIL-PDLKKNGH--RVLIFSQFIFVLDILGHYMDIRG 218 (233)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s-~Kl~~l~~lL-~~~~~~~~--KvlIFSq~~~~Ld~l~~~l~~~g 218 (233)
....... ..........+..| +|+..+.++| ..+...|+ |+||||||+.++++|+..|...+
T Consensus 670 ---------~~~~~~~-----~~~~~~~~~~~~~s~~k~~~l~~ll~~~~~~~~~~~kvlifsq~t~~l~il~~~l~~~~ 735 (866)
T COG0553 670 ---------VLLLRED-----KDFDYLKKPLIQLSKGKLQALDELLLDKLLEEGHYHKVLIFSQFTPVLDLLEDYLKALG 735 (866)
T ss_pred ---------hhhhhcc-----cccccccchhhhccchHHHHHHHHHHHHHHhhcccccEEEEeCcHHHHHHHHHHHHhcC
Confidence 0000000 00112223445668 9999999999 88889998 99999999999999999999999
Q ss_pred CeEEEeeCCcccCCC
Q psy2047 219 WRHLRLDGATQVSSR 233 (233)
Q Consensus 219 i~~~rldG~~~~~~R 233 (233)
+.|+++||+++.++|
T Consensus 736 ~~~~~ldG~~~~~~r 750 (866)
T COG0553 736 IKYVRLDGSTPAKRR 750 (866)
T ss_pred CcEEEEeCCCChhhH
Confidence 999999999987665
No 16
>KOG1016|consensus
Probab=99.83 E-value=1.4e-20 Score=164.48 Aligned_cols=230 Identities=23% Similarity=0.275 Sum_probs=151.7
Q ss_pred CCCchhhhhhhcchhhhhhhh---------hHHHHHHHHHhhhhhhhhcchhhhhhcCCCceEEEEEeeCCHHHHHHHHH
Q psy2047 1 MDSDSEDDARYEDKRKEQATF---------EVEQVDQAKRIISPFMLRRLKKDVLTELPKKTALVIKVPMIPSQAEKYRG 71 (233)
Q Consensus 1 lg~~~~F~~~~~~~~~~~~~~---------~~~~~~~L~~~l~~~~lRRtk~~~~~~LP~k~e~~v~v~ls~~q~~lY~~ 71 (233)
||..++|-..|..|+.++.++ ++.+.+.|+.+|..|+.||+...+...||.|.|+|+-|.+|.+||.||+.
T Consensus 492 LGTR~eF~nmFErPI~NGQCvDStPdDvklmryRtHVLhsLl~GFVQRR~HtvLk~~LP~k~EyViLvr~s~iQR~LY~~ 571 (1387)
T KOG1016|consen 492 LGTRKEFINMFERPIKNGQCVDSTPDDVKLMRYRTHVLHSLLKGFVQRRTHTVLKKILPEKKEYVILVRKSQIQRQLYRN 571 (1387)
T ss_pred cchHHHHHHHhhccccCCccccCChhHHHHHHHHHHHHHHHHHHHHHhcchhhHhhhcccccceEEEEeHHHHHHHHHHH
Confidence 799999999999999987744 47789999999999999999999988999999999999999999999999
Q ss_pred HHHHHhhhcCCCCCCCCccchhhHHHHHHHHhhccccchhhccchhhHHHHHHhhhcCC----CCCCCCc-hhhhhhhcc
Q psy2047 72 LMEDFKKTANPEGSNRSNEISHMSMFMMLRKMANHPLGLRYYFQENTLREIADCLVEDP----TYKGTNP-QYILEDISW 146 (233)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~l~~l~~Lr~~c~hp~l~~~~~~~~~~~~~~~~~~~~~----~~~~~~~-~~~~~~~~~ 146 (233)
++-........ ......+-|..+..--++||||+.+....+.+....-...-.++. ....... .....+.+.
T Consensus 572 Fm~d~~r~~~~---~~~~~~NPLkAF~vCcKIWNHPDVLY~~l~k~~~a~e~dl~vee~~~ag~~~~~~P~~~~~~~~s~ 648 (1387)
T KOG1016|consen 572 FMLDAKREIAA---NNDAVFNPLKAFSVCCKIWNHPDVLYRLLEKKKRAEEDDLRVEEMKFAGLQQQQSPFNSIPSNPST 648 (1387)
T ss_pred HHHHHHHhhcc---ccccccChHHHHHHHHHhcCChHHHHHHHHHhhhhhhhhhhHHHHhhhcccccCCCCCCCCCCCCC
Confidence 98665544421 112223456666666789999998876554322211111000000 0000000 000000000
Q ss_pred CCchhhHhhhhc---cc-cccccccc-------------------CCchhhhccccHHHHHHHHhHHHhCCCeEEEEech
Q psy2047 147 LSDYDIHQLSLK---HK-TLDCAKYK-------------------VPDDLVVESGKLKKLDEILPDLKKNGHRVLIFSQF 203 (233)
Q Consensus 147 ~~~~~~~~~~~~---~~-~~~~~~~~-------------------~~~~~~~~s~Kl~~l~~lL~~~~~~~~KvlIFSq~ 203 (233)
.......+..+. +. ....+.+. .....+..+.|+..+++++.+-...|+|+|||||.
T Consensus 649 ~laSs~~k~~n~t~kp~~s~~~p~f~ee~~e~~~y~~w~~el~~nYq~gvLen~pk~V~~~~~~des~~~g~kil~fSq~ 728 (1387)
T KOG1016|consen 649 PLASSTSKSANKTKKPRGSKKAPKFDEEDEEVEKYSDWTFELFENYQEGVLENGPKIVISLEILDESTQIGEKILIFSQN 728 (1387)
T ss_pred cccchhhhhhcccCCcccCcCCCCcccccccccchhhHHHHHHhhhhcccccCCCceEEEEeeeccccccCceEEEeecc
Confidence 000000000000 00 00000000 02334555899999999999988889999999999
Q ss_pred hhHHHHHHHHHHhc------------------CCeEEEeeCCcccCCC
Q psy2047 204 IFVLDILGHYMDIR------------------GWRHLRLDGATQVSSR 233 (233)
Q Consensus 204 ~~~Ld~l~~~l~~~------------------gi~~~rldG~~~~~~R 233 (233)
...||.|+..|.+. ++.|+|+||.++...|
T Consensus 729 l~~Ld~ieeil~krq~pc~~gdnG~~aqkW~~n~sy~rldG~t~a~~r 776 (1387)
T KOG1016|consen 729 LTALDMIEEILKKRQIPCKDGDNGCPAQKWEKNRSYLRLDGTTSAADR 776 (1387)
T ss_pred hhHHHHHHHHHhcccccCCCCCCCCchhhhhhccceecccCCcccchH
Confidence 99999999999762 4689999999998765
No 17
>KOG1001|consensus
Probab=99.70 E-value=1e-16 Score=143.11 Aligned_cols=223 Identities=22% Similarity=0.240 Sum_probs=142.9
Q ss_pred hhhhhhcchhhhhhhhhHHHHHHHHHhhhhhhhhcchhhh-----hhcCCCceEEEEEeeCCHHHHHHHHHHHHHHhhhc
Q psy2047 6 EDDARYEDKRKEQATFEVEQVDQAKRIISPFMLRRLKKDV-----LTELPKKTALVIKVPMIPSQAEKYRGLMEDFKKTA 80 (233)
Q Consensus 6 ~F~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~lRRtk~~~-----~~~LP~k~e~~v~v~ls~~q~~lY~~~~~~~~~~~ 80 (233)
-|...+..|...... .+....++.+++++++||||... ...|||+++.++.+.++..++.+|+.+......++
T Consensus 317 ~~~~~i~~p~~~~~~--~~~~k~l~~~L~~v~lrrtK~~~~~gk~i~~lppk~v~~~~~~~~~~e~~~y~~l~~~~~~~~ 394 (674)
T KOG1001|consen 317 YFKLLIQDPDERNKY--KEGVKTLQGILKKVMLRRTKEMEVDGKPILELPPKTVFVTEVDLSKSERSAYKALKANSRNQF 394 (674)
T ss_pred HHHHHhcChhhhhhH--HHHHHHHHHHHHHHHhcccccccccCccccccCcceeEeeeccccHhHHHHHHHHhhhhhhHH
Confidence 455555565555543 57889999999999999999742 34799999999999999999999999998877666
Q ss_pred C---CCCCCCCccchhhHHHHHHHHhhccccchhhccchh--------hHHHHHHhhhcCCCCCCCCchhhhhhh--ccC
Q psy2047 81 N---PEGSNRSNEISHMSMFMMLRKMANHPLGLRYYFQEN--------TLREIADCLVEDPTYKGTNPQYILEDI--SWL 147 (233)
Q Consensus 81 ~---~~~~~~~~~~~~l~~l~~Lr~~c~hp~l~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~ 147 (233)
. ..+....++..++..+.+|||+|+||.++...+... ........+..+ .....+.. .++. ..+
T Consensus 395 ~~~~~~~~~~~~Y~~~l~~lLrlrq~c~h~~lv~~~~~~~~~~~~~~~~~~~~i~~l~~~--~~c~ic~~-~~~~~it~c 471 (674)
T KOG1001|consen 395 SNYANEGTVSSTYAFFLKNLLRLRQACDHSLLVMYEMDSLGDSGSAAALIIRLIVDLSVS--HWCHICCD-LDSFFITRC 471 (674)
T ss_pred HHHhhhchhhhhHHHHHHHHHHHHHHccchHhhhhhhhccccccccchHHHHHHHHHhhc--cccccccc-cccceeecc
Confidence 4 233355678889999999999999999987432211 111111112111 00000000 0000 000
Q ss_pred Cchhh-Hhhhhc------ccccccccccC---------Cch----hhhccccHHHHHHHHhHHHhCCC-eEEEEechhhH
Q psy2047 148 SDYDI-HQLSLK------HKTLDCAKYKV---------PDD----LVVESGKLKKLDEILPDLKKNGH-RVLIFSQFIFV 206 (233)
Q Consensus 148 ~~~~~-~~~~~~------~~~~~~~~~~~---------~~~----~~~~s~Kl~~l~~lL~~~~~~~~-KvlIFSq~~~~ 206 (233)
....+ ...... ..+..|-.... ... ....|.|+..+..+|........ |+||||||+.+
T Consensus 472 ~h~~c~~c~~~~i~~~~~~~~~~cr~~l~~~~l~s~~~~~~~~~~~~~~s~ki~~~~~~l~~~~~s~~~kiiifsq~~~~ 551 (674)
T KOG1001|consen 472 GHDFCVECLKKSIQQSENAPCPLCRNVLKEKKLLSANPLPSIINDLLPESSKIYAFLKILQAKEMSEQPKIVIFSQLIWG 551 (674)
T ss_pred cchHHHHHHHhccccccCCCCcHHHHHHHHHHHhhcccccchhhhccchhhhhHHHHHHHhhccCCCCCceeeehhHHHH
Confidence 00000 000000 00111100000 000 11169999999999985543344 99999999999
Q ss_pred HHHHHHHHHhcCCeEEEeeCCcccCCC
Q psy2047 207 LDILGHYMDIRGWRHLRLDGATQVSSR 233 (233)
Q Consensus 207 Ld~l~~~l~~~gi~~~rldG~~~~~~R 233 (233)
+++++..+...|+.+.++||.|+.+.|
T Consensus 552 l~l~~~~l~~~~~~~~~~~g~~~~~~r 578 (674)
T KOG1001|consen 552 LALVCLRLFFKGFVFLRYDGEMLMKIR 578 (674)
T ss_pred HHHhhhhhhhcccccchhhhhhHHHHH
Confidence 999999999999999999999988765
No 18
>PF00176 SNF2_N: SNF2 family N-terminal domain; InterPro: IPR000330 This domain is found in proteins involved in a variety of processes including transcription regulation (e.g., SNF2, STH1, brahma, MOT1), DNA repair (e.g., ERCC6, RAD16, RAD5), DNA recombination (e.g., RAD54), and chromatin unwinding (e.g., ISWI) as well as a variety of other proteins with little functional information (e.g., lodestar, ETL1) [, ]. SNF2 functions as the ATPase component of the SNF2/SWI multisubunit complex, which utilises energy derived from ATP hydrolysis to disrupt histone-DNA interactions, resulting in the increased accessibility of DNA to transcription factors. Proteins that contain this domain appear to be distantly related to the DEAX box helicases IPR001410 from INTERPRO, however no helicase activity has ever been demonstrated for these proteins. ; GO: 0003677 DNA binding, 0005524 ATP binding; PDB: 1Z63_B 1Z3I_X 3DMQ_A 3MWY_W.
Probab=99.53 E-value=2.9e-14 Score=117.55 Aligned_cols=105 Identities=27% Similarity=0.428 Sum_probs=85.7
Q ss_pred CchhhhhhhcchhhhhhhhhHHHHHHHHHhhhhhhhhcchhhhhhcCCCceEEEEEeeCCHHHHHHHHHHHHHHhhhcCC
Q psy2047 3 SDSEDDARYEDKRKEQATFEVEQVDQAKRIISPFMLRRLKKDVLTELPKKTALVIKVPMIPSQAEKYRGLMEDFKKTANP 82 (233)
Q Consensus 3 ~~~~F~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~lRRtk~~~~~~LP~k~e~~v~v~ls~~q~~lY~~~~~~~~~~~~~ 82 (233)
+...|.++|..+ ......+...+|+.+++++++||++.++..+||+++++++.|+||+.|+++|+.+.......+..
T Consensus 194 ~~~~f~~~~~~~---~~~~~~~~~~~L~~~l~~~~~r~~~~d~~~~lp~~~~~~~~~~ls~~q~~~Y~~~~~~~~~~~~~ 270 (299)
T PF00176_consen 194 DRRSFKKWFYRP---DKENSYENIERLRELLSEFMIRRTKKDVEKELPPKIEHVINVELSPEQRELYNELLKEARENLKQ 270 (299)
T ss_dssp SHHHHHHHTHHH---HHTHHHHHHHHHHHHHCCCEECHCGGGGCTTSTCEEEEEEEEGG-HHHHHHHHHHHHHHGGCCTT
T ss_pred cchhhhhhhhhh---ccccccccccccccccchhhhhhhcccccccCCceEEEEEEeCCCHHHHHHHHHHHHHHHHHHHh
Confidence 456777777665 33445677899999999999999999997789999999999999999999999999998877765
Q ss_pred CC-CCCCccchhhHHHHHHHHhhccccch
Q psy2047 83 EG-SNRSNEISHMSMFMMLRKMANHPLGL 110 (233)
Q Consensus 83 ~~-~~~~~~~~~l~~l~~Lr~~c~hp~l~ 110 (233)
.. ........++..+.+|||+|+||+|+
T Consensus 271 ~~~~~~~~~~~~~~~~~~lr~~c~hp~l~ 299 (299)
T PF00176_consen 271 SSRKKSKKLSSLLQILKRLRQVCNHPYLV 299 (299)
T ss_dssp -T--TCHHHHHHHHHHHHHHHHHH-THHC
T ss_pred hcccchhhHHHHHHHHHHHHHHhCCcccC
Confidence 44 34456677889999999999999874
No 19
>KOG1000|consensus
Probab=99.49 E-value=1.8e-13 Score=115.38 Aligned_cols=154 Identities=23% Similarity=0.338 Sum_probs=105.1
Q ss_pred Cchhhhhhhcchhhhhhhhh---HHHHHHHHHhh-hhhhhhcchhhhhhcCCCceEEEEEeeCCHHHHHHHHHHHHHHhh
Q psy2047 3 SDSEDDARYEDKRKEQATFE---VEQVDQAKRII-SPFMLRRLKKDVLTELPKKTALVIKVPMIPSQAEKYRGLMEDFKK 78 (233)
Q Consensus 3 ~~~~F~~~~~~~~~~~~~~~---~~~~~~L~~~l-~~~~lRRtk~~~~~~LP~k~e~~v~v~ls~~q~~lY~~~~~~~~~ 78 (233)
.+.+|..+||+...-.-..+ -.++.+|+.+| +-+|+||+|++++.+||||+..|+++- .+-+-+.-+.+.....+
T Consensus 370 ~f~efa~rYCd~k~vr~~~Dykg~tnl~EL~~lL~k~lMIRRlK~dvL~qLPpKrr~Vv~~~-~gr~da~~~~lv~~a~~ 448 (689)
T KOG1000|consen 370 NFHEFAIRYCDGKQVRFCFDYKGCTNLEELAALLFKRLMIRRLKADVLKQLPPKRREVVYVS-GGRIDARMDDLVKAAAD 448 (689)
T ss_pred cHHHHHHHhcCccccceeeecCCCCCHHHHHHHHHHHHHHHHHHHHHHhhCCccceEEEEEc-CCccchHHHHHHHHhhh
Confidence 57899999999776543222 34688899998 568999999999999999977777665 44444444444433322
Q ss_pred hcCCCCCCCCccchhhHHHHHHHHhhccccchhhccchhhHHHHHHhhhcCCCCCCCCchhhhhhhccCCchhhHhhhhc
Q psy2047 79 TANPEGSNRSNEISHMSMFMMLRKMANHPLGLRYYFQENTLREIADCLVEDPTYKGTNPQYILEDISWLSDYDIHQLSLK 158 (233)
Q Consensus 79 ~~~~~~~~~~~~~~~l~~l~~Lr~~c~hp~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (233)
-.+ ..........+++.-+
T Consensus 449 ~t~----~~~~e~~~~~l~l~y~--------------------------------------------------------- 467 (689)
T KOG1000|consen 449 YTK----VNSMERKHESLLLFYS--------------------------------------------------------- 467 (689)
T ss_pred cch----hhhhhhhhHHHHHHHH---------------------------------------------------------
Confidence 110 0000011111111111
Q ss_pred ccccccccccCCchhhhccccHHHHHHHHhH----HHhCCCeEEEEechhhHHHHHHHHHHhcCCeEEEeeCCcccCCC
Q psy2047 159 HKTLDCAKYKVPDDLVVESGKLKKLDEILPD----LKKNGHRVLIFSQFIFVLDILGHYMDIRGWRHLRLDGATQVSSR 233 (233)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~s~Kl~~l~~lL~~----~~~~~~KvlIFSq~~~~Ld~l~~~l~~~gi~~~rldG~~~~~~R 233 (233)
...-.|+..+.+-|-. .-..+.|+|||+++..+||-|+..+.++++.++||||+|+...|
T Consensus 468 ---------------~tgiaK~~av~eyi~~~~~l~d~~~~KflVFaHH~~vLd~Iq~~~~~r~vg~IRIDGst~s~~R 531 (689)
T KOG1000|consen 468 ---------------LTGIAKAAAVCEYILENYFLPDAPPRKFLVFAHHQIVLDTIQVEVNKRKVGSIRIDGSTPSHRR 531 (689)
T ss_pred ---------------HhcccccHHHHHHHHhCcccccCCCceEEEEehhHHHHHHHHHHHHHcCCCeEEecCCCCchhH
Confidence 1225788888887765 33457899999999999999999999999999999999998766
No 20
>PF11496 HDA2-3: Class II histone deacetylase complex subunits 2 and 3; InterPro: IPR021006 This entry contains the class II histone deacetylase complex subunits HDA2 and HDA3 is found in fungi. The member from Schizosaccharomyces pombe (Fission yeast) is referred to as Ccq1 in Q10432 from SWISSPROT. These proteins associate with HDA1 to generate the activity of the HDA1 histone deacetylase complex. HDA1 interacts with itself and with the HDA2-HDA3 subcomplex to form a probable tetramer and these interactions are necessary for catalytic activity. The HDA1 histone deacetylase complex is responsible for the deacetylation of lysine residues on the N-terminal part of the core histones (H2A, H2B, H3 and H4). Histone deacetylation gives a tag for epigenetic repression and plays an important role in transcriptional regulation, cell cycle progression and developmental events. HDA2 and HDA3 have a conserved coiled-coil domain towards their C terminus []. ; PDB: 3HGQ_C 3HGT_B.
Probab=99.29 E-value=1.1e-11 Score=101.53 Aligned_cols=133 Identities=21% Similarity=0.175 Sum_probs=87.4
Q ss_pred eEEEEEeeCCHHHHHHHHHHHHHHhhhcCCCCC---CC---------CccchhhHHHHHHHHhhccccchhhccchhhHH
Q psy2047 53 TALVIKVPMIPSQAEKYRGLMEDFKKTANPEGS---NR---------SNEISHMSMFMMLRKMANHPLGLRYYFQENTLR 120 (233)
Q Consensus 53 ~e~~v~v~ls~~q~~lY~~~~~~~~~~~~~~~~---~~---------~~~~~~l~~l~~Lr~~c~hp~l~~~~~~~~~~~ 120 (233)
.++.++++|++.|+++|+.++......+..... .. .....+-.++..|+.+|+||+|+...+-++..-
T Consensus 4 ~~y~lP~pmt~~QKdl~e~iislh~~~il~~~~~~~~~~~i~~~~~~~~~~~~~~~~~nl~~V~~HP~LlvdH~mPk~ll 83 (297)
T PF11496_consen 4 GEYYLPTPMTSFQKDLYEQIISLHYSDILKFCETNDSSESIDSLLDESLVQSMELLIENLRLVANHPSLLVDHYMPKQLL 83 (297)
T ss_dssp SEEEEEE---HHHHHHHHHHHHHTHHHHHHHHHSTTT--HHHH-------HHHHHHHHHHHHHHH-GGGT--TT--S-S-
T ss_pred ceEEEecCccHHHHHHHHHHHHHHHHHHHHHHcccCccccccchhhhhhHHHHHHHHHHHHHhccCccccccccCccccc
Confidence 478999999999999999998776554431111 11 112334578999999999999986544322110
Q ss_pred HHHHhhhcCCCCCCCCchhhhhhhccCCchhhHhhhhcccccccccccCCchhhhccccHHHHHHHHhHH-----HhCCC
Q psy2047 121 EIADCLVEDPTYKGTNPQYILEDISWLSDYDIHQLSLKHKTLDCAKYKVPDDLVVESGKLKKLDEILPDL-----KKNGH 195 (233)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~Kl~~l~~lL~~~-----~~~~~ 195 (233)
.....+.....|+|+.+|-.+|..+ ...+.
T Consensus 84 ---------------------------------------------~~e~~~~~~~tS~KF~~L~~Li~~li~~~~~~~~~ 118 (297)
T PF11496_consen 84 ---------------------------------------------LSEPAEWLAYTSGKFQFLNDLIDSLIDRDRREYPL 118 (297)
T ss_dssp ---------------------------------------------STTHHHHHHHT-HHHHHHHHHHHHH-----TTSSE
T ss_pred ---------------------------------------------cchHHHHHHHcCchHHHHHHHHHHHHhhhcccCCc
Confidence 0001122346699999999999999 44466
Q ss_pred eEEEEechhhHHHHHHHHHHhcCCeEEEeeCCccc
Q psy2047 196 RVLIFSQFIFVLDILGHYMDIRGWRHLRLDGATQV 230 (233)
Q Consensus 196 KvlIFSq~~~~Ld~l~~~l~~~gi~~~rldG~~~~ 230 (233)
++||.++...++|+||.+|-..++.|.|++|..-.
T Consensus 119 ~ilIv~~~~k~ldllE~~llGk~~~~kr~sg~~l~ 153 (297)
T PF11496_consen 119 HILIVSRSGKELDLLEGLLLGKKLNYKRYSGESLY 153 (297)
T ss_dssp EEEEEE-STHHHHHHHHHHTTSSSEEEESSS--S-
T ss_pred eEEEEecCccHHHHHHHHHccCCeeEEecCCCCCc
Confidence 99999999999999999999999999999997543
No 21
>PRK04914 ATP-dependent helicase HepA; Validated
Probab=98.88 E-value=8.8e-09 Score=96.09 Aligned_cols=57 Identities=14% Similarity=0.143 Sum_probs=50.3
Q ss_pred hccccHHHHHHHHhHHHhCCCeEEEEechhhHHHHHHHHH-HhcCCeEEEeeCCcccCCC
Q psy2047 175 VESGKLKKLDEILPDLKKNGHRVLIFSQFIFVLDILGHYM-DIRGWRHLRLDGATQVSSR 233 (233)
Q Consensus 175 ~~s~Kl~~l~~lL~~~~~~~~KvlIFSq~~~~Ld~l~~~l-~~~gi~~~rldG~~~~~~R 233 (233)
..++|+..|.++|+... ++|+||||++..+.+.|+..| ...||+++.|+|+|+..+|
T Consensus 476 ~~d~Ki~~L~~~L~~~~--~~KvLVF~~~~~t~~~L~~~L~~~~Gi~~~~ihG~~s~~eR 533 (956)
T PRK04914 476 NFDPRVEWLIDFLKSHR--SEKVLVICAKAATALQLEQALREREGIRAAVFHEGMSIIER 533 (956)
T ss_pred ccCHHHHHHHHHHHhcC--CCeEEEEeCcHHHHHHHHHHHhhccCeeEEEEECCCCHHHH
Confidence 34789999999998653 789999999999999999999 5679999999999998765
No 22
>PRK13766 Hef nuclease; Provisional
Probab=97.60 E-value=0.0003 Score=65.81 Aligned_cols=52 Identities=25% Similarity=0.447 Sum_probs=47.8
Q ss_pred ccccHHHHHHHHhHHH--hCCCeEEEEechhhHHHHHHHHHHhcCCeEEEeeCC
Q psy2047 176 ESGKLKKLDEILPDLK--KNGHRVLIFSQFIFVLDILGHYMDIRGWRHLRLDGA 227 (233)
Q Consensus 176 ~s~Kl~~l~~lL~~~~--~~~~KvlIFSq~~~~Ld~l~~~l~~~gi~~~rldG~ 227 (233)
.++|+..|.++|.+.. ..+.|+|||+++..+.+.|...|...|+++.+++|.
T Consensus 345 ~~pK~~~L~~il~~~~~~~~~~kvlIF~~~~~t~~~L~~~L~~~~~~~~~~~g~ 398 (773)
T PRK13766 345 EHPKLEKLREIVKEQLGKNPDSRIIVFTQYRDTAEKIVDLLEKEGIKAVRFVGQ 398 (773)
T ss_pred CChHHHHHHHHHHHHHhcCCCCeEEEEeCcHHHHHHHHHHHHhCCCceEEEEcc
Confidence 3789999999999876 356799999999999999999999999999999997
No 23
>TIGR00603 rad25 DNA repair helicase rad25. All proteins in this family for which functions are known are DNA-DNA helicases used for the initiation of nucleotide excision repair and transacription as part of the TFIIH complex.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.11 E-value=0.0021 Score=58.99 Aligned_cols=52 Identities=19% Similarity=0.339 Sum_probs=42.2
Q ss_pred cccHHHHHHHHhHHHhCCCeEEEEechhhHHHHHHHHHHhcCCeEEEeeCCcccCCC
Q psy2047 177 SGKLKKLDEILPDLKKNGHRVLIFSQFIFVLDILGHYMDIRGWRHLRLDGATQVSSR 233 (233)
Q Consensus 177 s~Kl~~l~~lL~~~~~~~~KvlIFSq~~~~Ld~l~~~l~~~gi~~~rldG~~~~~~R 233 (233)
..|+.++..+++.-...++|+||||+++..++.+...| |. ..|+|+|+.++|
T Consensus 479 p~K~~~~~~Li~~he~~g~kiLVF~~~~~~l~~~a~~L---~~--~~I~G~ts~~ER 530 (732)
T TIGR00603 479 PNKFRACQFLIRFHEQRGDKIIVFSDNVFALKEYAIKL---GK--PFIYGPTSQQER 530 (732)
T ss_pred hHHHHHHHHHHHHHhhcCCeEEEEeCCHHHHHHHHHHc---CC--ceEECCCCHHHH
Confidence 46899988888765557899999999999888887776 44 348999998776
No 24
>KOG0331|consensus
Probab=96.93 E-value=0.0011 Score=58.06 Aligned_cols=59 Identities=29% Similarity=0.513 Sum_probs=53.0
Q ss_pred hccccHHHHHHHHhHHHh-CCCeEEEEechhhHHHHHHHHHHhcCCeEEEeeCCcccCCC
Q psy2047 175 VESGKLKKLDEILPDLKK-NGHRVLIFSQFIFVLDILGHYMDIRGWRHLRLDGATQVSSR 233 (233)
Q Consensus 175 ~~s~Kl~~l~~lL~~~~~-~~~KvlIFSq~~~~Ld~l~~~l~~~gi~~~rldG~~~~~~R 233 (233)
...+|...|.++|..... .+.|+|||+....+-+-|+..+...||+.+-|||+.++.+|
T Consensus 321 ~~~~K~~~l~~lL~~~~~~~~~KvIIFc~tkr~~~~l~~~l~~~~~~a~~iHGd~sQ~eR 380 (519)
T KOG0331|consen 321 DETAKLRKLGKLLEDISSDSEGKVIIFCETKRTCDELARNLRRKGWPAVAIHGDKSQSER 380 (519)
T ss_pred CHHHHHHHHHHHHHHHhccCCCcEEEEecchhhHHHHHHHHHhcCcceeeecccccHHHH
Confidence 347899999999998873 35699999999999999999999999999999999999876
No 25
>cd00079 HELICc Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may not be an autonomously folding unit, but an integral part of the helicase; 4 helicase superfamilies at present according to the organization of their signature motifs; all helicases share the ability to unwind nucleic acid duplexes with a distinct directional polarity; they utilize the free energy from nucleoside triphosphate hydrolysis to fuel their translocation along DNA, unwinding the duplex in the process
Probab=96.92 E-value=0.0018 Score=46.15 Aligned_cols=55 Identities=31% Similarity=0.378 Sum_probs=49.3
Q ss_pred ccHHHHHHHHhHHHhCCCeEEEEechhhHHHHHHHHHHhcCCeEEEeeCCcccCC
Q psy2047 178 GKLKKLDEILPDLKKNGHRVLIFSQFIFVLDILGHYMDIRGWRHLRLDGATQVSS 232 (233)
Q Consensus 178 ~Kl~~l~~lL~~~~~~~~KvlIFSq~~~~Ld~l~~~l~~~gi~~~rldG~~~~~~ 232 (233)
.|+..+.+++......+.++|||+......+.+...|...++.+..++|+++..+
T Consensus 12 ~k~~~i~~~i~~~~~~~~~~lvf~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 66 (131)
T cd00079 12 EKLEALLELLKEHLKKGGKVLIFCPSKKMLDELAELLRKPGIKVAALHGDGSQEE 66 (131)
T ss_pred HHHHHHHHHHHhcccCCCcEEEEeCcHHHHHHHHHHHHhcCCcEEEEECCCCHHH
Confidence 6999999999887666789999999999999999999999999999999987543
No 26
>COG1061 SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair]
Probab=96.62 E-value=0.017 Score=50.63 Aligned_cols=130 Identities=16% Similarity=0.227 Sum_probs=94.5
Q ss_pred HHHHHHHhhhhhhhhcchhhhhh--cCCCceEEEEEeeCCHHHHHHHHHHHHHHhhhcCCCCCCCCccchhhHHHHHHHH
Q psy2047 25 QVDQAKRIISPFMLRRLKKDVLT--ELPKKTALVIKVPMIPSQAEKYRGLMEDFKKTANPEGSNRSNEISHMSMFMMLRK 102 (233)
Q Consensus 25 ~~~~L~~~l~~~~lRRtk~~~~~--~LP~k~e~~v~v~ls~~q~~lY~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~Lr~ 102 (233)
....+...+.|.+......+... .|.|.....+++.+++.+...|................ .......+.
T Consensus 190 ~~~~l~~~~g~~vy~~~~~~li~~g~Lap~~~~~i~~~~t~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~ 261 (442)
T COG1061 190 RIGDLFDLIGPIVYEVSLKELIDEGYLAPYKYVEIKVTLTEDEEREYAKESARFRELLRARGT--------LRAENEARR 261 (442)
T ss_pred chhHHHHhcCCeEeecCHHHHHhCCCccceEEEEEEeccchHHHHHhhhhhhhhhhhhhhhhh--------hhHHHHHHH
Confidence 45567777788888877776554 49999999999999999999999887765533321110 000000000
Q ss_pred hhccccchhhccchhhHHHHHHhhhcCCCCCCCCchhhhhhhccCCchhhHhhhhcccccccccccCCchhhhccccHHH
Q psy2047 103 MANHPLGLRYYFQENTLREIADCLVEDPTYKGTNPQYILEDISWLSDYDIHQLSLKHKTLDCAKYKVPDDLVVESGKLKK 182 (233)
Q Consensus 103 ~c~hp~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~Kl~~ 182 (233)
.......|+..
T Consensus 262 ---------------------------------------------------------------------~~~~~~~~~~~ 272 (442)
T COG1061 262 ---------------------------------------------------------------------IAIASERKIAA 272 (442)
T ss_pred ---------------------------------------------------------------------HhhccHHHHHH
Confidence 00123678888
Q ss_pred HHHHHhHHHhCCCeEEEEechhhHHHHHHHHHHhcCCeEEEeeCCcccCCC
Q psy2047 183 LDEILPDLKKNGHRVLIFSQFIFVLDILGHYMDIRGWRHLRLDGATQVSSR 233 (233)
Q Consensus 183 l~~lL~~~~~~~~KvlIFSq~~~~Ld~l~~~l~~~gi~~~rldG~~~~~~R 233 (233)
+..++.... .+.+++||+.++.....+...+...|+ ...++|.++..+|
T Consensus 273 ~~~~~~~~~-~~~~~lif~~~~~~a~~i~~~~~~~~~-~~~it~~t~~~eR 321 (442)
T COG1061 273 VRGLLLKHA-RGDKTLIFASDVEHAYEIAKLFLAPGI-VEAITGETPKEER 321 (442)
T ss_pred HHHHHHHhc-CCCcEEEEeccHHHHHHHHHHhcCCCc-eEEEECCCCHHHH
Confidence 888887654 788999999999999999999999999 8999999998765
No 27
>COG1111 MPH1 ERCC4-like helicases [DNA replication, recombination, and repair]
Probab=96.58 E-value=0.0063 Score=52.83 Aligned_cols=53 Identities=25% Similarity=0.412 Sum_probs=46.3
Q ss_pred cccHHHHHHHHhHHHh--CCCeEEEEechhhHHHHHHHHHHhcCCeEE-EeeCCcc
Q psy2047 177 SGKLKKLDEILPDLKK--NGHRVLIFSQFIFVLDILGHYMDIRGWRHL-RLDGATQ 229 (233)
Q Consensus 177 s~Kl~~l~~lL~~~~~--~~~KvlIFSq~~~~Ld~l~~~l~~~gi~~~-rldG~~~ 229 (233)
-+|+..+.++|++..+ .+.++|||++|+.|.+.|-.+|.+.|+... +|-|+-+
T Consensus 347 HPKl~~l~eilke~~~k~~~~RvIVFT~yRdTae~i~~~L~~~~~~~~~rFiGQa~ 402 (542)
T COG1111 347 HPKLEKLREILKEQLEKNGDSRVIVFTEYRDTAEEIVNFLKKIGIKARVRFIGQAS 402 (542)
T ss_pred CccHHHHHHHHHHHHhcCCCceEEEEehhHhHHHHHHHHHHhcCCcceeEEeeccc
Confidence 6899999999998763 356999999999999999999999998876 9988643
No 28
>KOG0333|consensus
Probab=96.38 E-value=0.005 Score=53.71 Aligned_cols=59 Identities=29% Similarity=0.344 Sum_probs=52.1
Q ss_pred hhhccccHHHHHHHHhHHHhCCCeEEEEechhhHHHHHHHHHHhcCCeEEEeeCCcccCCC
Q psy2047 173 LVVESGKLKKLDEILPDLKKNGHRVLIFSQFIFVLDILGHYMDIRGWRHLRLDGATQVSSR 233 (233)
Q Consensus 173 ~~~~s~Kl~~l~~lL~~~~~~~~KvlIFSq~~~~Ld~l~~~l~~~gi~~~rldG~~~~~~R 233 (233)
+...+.|...|+++|+.. ....+|||.......|.|...|.+.||.+++|+|+-++.+|
T Consensus 498 m~~ed~k~kkL~eil~~~--~~ppiIIFvN~kk~~d~lAk~LeK~g~~~~tlHg~k~qeQR 556 (673)
T KOG0333|consen 498 MVSEDEKRKKLIEILESN--FDPPIIIFVNTKKGADALAKILEKAGYKVTTLHGGKSQEQR 556 (673)
T ss_pred EecchHHHHHHHHHHHhC--CCCCEEEEEechhhHHHHHHHHhhccceEEEeeCCccHHHH
Confidence 355588999999999875 34589999999999999999999999999999999988776
No 29
>PTZ00110 helicase; Provisional
Probab=96.37 E-value=0.0063 Score=54.70 Aligned_cols=58 Identities=28% Similarity=0.485 Sum_probs=52.0
Q ss_pred ccccHHHHHHHHhHHHhCCCeEEEEechhhHHHHHHHHHHhcCCeEEEeeCCcccCCC
Q psy2047 176 ESGKLKKLDEILPDLKKNGHRVLIFSQFIFVLDILGHYMDIRGWRHLRLDGATQVSSR 233 (233)
Q Consensus 176 ~s~Kl~~l~~lL~~~~~~~~KvlIFSq~~~~Ld~l~~~l~~~gi~~~rldG~~~~~~R 233 (233)
...|...|.++|..+...+.|+|||++.....+.|...|...|+....++|+++..+|
T Consensus 359 ~~~k~~~L~~ll~~~~~~~~k~LIF~~t~~~a~~l~~~L~~~g~~~~~ihg~~~~~eR 416 (545)
T PTZ00110 359 EHEKRGKLKMLLQRIMRDGDKILIFVETKKGADFLTKELRLDGWPALCIHGDKKQEER 416 (545)
T ss_pred chhHHHHHHHHHHHhcccCCeEEEEecChHHHHHHHHHHHHcCCcEEEEECCCcHHHH
Confidence 4568888999998876677899999999999999999999999999999999988765
No 30
>TIGR03714 secA2 accessory Sec system translocase SecA2. Members of this protein family are homologous to SecA and part of the accessory Sec system. This system, including both five core proteins for export and a variable number of proteins for glycosylation, operates in certain Gram-positive pathogens for the maturation and delivery of serine-rich glycoproteins such as the cell surface glycoprotein GspB in Streptococcus gordonii.
Probab=95.78 E-value=0.016 Score=53.50 Aligned_cols=56 Identities=18% Similarity=0.218 Sum_probs=51.3
Q ss_pred cccHHHHHHHHhHHHhCCCeEEEEechhhHHHHHHHHHHhcCCeEEEeeCCcccCC
Q psy2047 177 SGKLKKLDEILPDLKKNGHRVLIFSQFIFVLDILGHYMDIRGWRHLRLDGATQVSS 232 (233)
Q Consensus 177 s~Kl~~l~~lL~~~~~~~~KvlIFSq~~~~Ld~l~~~l~~~gi~~~rldG~~~~~~ 232 (233)
..|+.++.+.+.+....+..+|||+..+..-+.+...|.+.|+++..|+|.++..+
T Consensus 407 ~~K~~ai~~~i~~~~~~~~pvLIft~s~~~se~ls~~L~~~gi~~~~L~a~~~~~E 462 (762)
T TIGR03714 407 PEKLMATLEDVKEYHETGQPVLLITGSVEMSEIYSELLLREGIPHNLLNAQNAAKE 462 (762)
T ss_pred HHHHHHHHHHHHHHhhCCCCEEEEECcHHHHHHHHHHHHHCCCCEEEecCCChHHH
Confidence 67999999999888788899999999999999999999999999999999987543
No 31
>PHA02558 uvsW UvsW helicase; Provisional
Probab=95.65 E-value=0.023 Score=50.61 Aligned_cols=58 Identities=12% Similarity=0.139 Sum_probs=50.0
Q ss_pred ccccHHHHHHHHhHHHhCCCeEEEEechhhHHHHHHHHHHhcCCeEEEeeCCcccCCC
Q psy2047 176 ESGKLKKLDEILPDLKKNGHRVLIFSQFIFVLDILGHYMDIRGWRHLRLDGATQVSSR 233 (233)
Q Consensus 176 ~s~Kl~~l~~lL~~~~~~~~KvlIFSq~~~~Ld~l~~~l~~~gi~~~rldG~~~~~~R 233 (233)
...+..++.+++..+...+.+++||+..+...+.|...|...|+++..++|+++.++|
T Consensus 326 ~~~Rn~~I~~~~~~~~~~~~~~lV~~~~~~h~~~L~~~L~~~g~~v~~i~G~~~~~eR 383 (501)
T PHA02558 326 HTKRNKWIANLALKLAKKGENTFVMFKYVEHGKPLYEMLKKVYDKVYYVSGEVDTEDR 383 (501)
T ss_pred cHHHHHHHHHHHHHHHhcCCCEEEEEEEHHHHHHHHHHHHHcCCCEEEEeCCCCHHHH
Confidence 3456677777777776778899999999999999999999999999999999998765
No 32
>PRK12898 secA preprotein translocase subunit SecA; Reviewed
Probab=95.56 E-value=0.021 Score=51.98 Aligned_cols=54 Identities=17% Similarity=0.244 Sum_probs=49.0
Q ss_pred cccHHHHHHHHhHHHhCCCeEEEEechhhHHHHHHHHHHhcCCeEEEeeCCccc
Q psy2047 177 SGKLKKLDEILPDLKKNGHRVLIFSQFIFVLDILGHYMDIRGWRHLRLDGATQV 230 (233)
Q Consensus 177 s~Kl~~l~~lL~~~~~~~~KvlIFSq~~~~Ld~l~~~l~~~gi~~~rldG~~~~ 230 (233)
..|..++.+++..+...+..+|||+..+...+.|...|.+.|+++..|+|.++.
T Consensus 456 ~~K~~aL~~~i~~~~~~~~pvLIft~t~~~se~L~~~L~~~gi~~~~Lhg~~~~ 509 (656)
T PRK12898 456 AAKWAAVAARVRELHAQGRPVLVGTRSVAASERLSALLREAGLPHQVLNAKQDA 509 (656)
T ss_pred HHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHCCCCEEEeeCCcHH
Confidence 569999999998877677889999999999999999999999999999998654
No 33
>PRK09200 preprotein translocase subunit SecA; Reviewed
Probab=95.28 E-value=0.033 Score=51.88 Aligned_cols=56 Identities=21% Similarity=0.200 Sum_probs=50.6
Q ss_pred ccccHHHHHHHHhHHHhCCCeEEEEechhhHHHHHHHHHHhcCCeEEEeeCCcccC
Q psy2047 176 ESGKLKKLDEILPDLKKNGHRVLIFSQFIFVLDILGHYMDIRGWRHLRLDGATQVS 231 (233)
Q Consensus 176 ~s~Kl~~l~~lL~~~~~~~~KvlIFSq~~~~Ld~l~~~l~~~gi~~~rldG~~~~~ 231 (233)
...|..++.+.+.+....+.++|||+..+...+.|...|.+.|+++..|+|.++..
T Consensus 410 ~~~K~~al~~~i~~~~~~~~pvLIf~~t~~~se~l~~~L~~~gi~~~~L~~~~~~~ 465 (790)
T PRK09200 410 LDEKYKAVIEEVKERHETGRPVLIGTGSIEQSETFSKLLDEAGIPHNLLNAKNAAK 465 (790)
T ss_pred HHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHCCCCEEEecCCccHH
Confidence 36799999999988777789999999999999999999999999999999997654
No 34
>COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]
Probab=95.17 E-value=0.025 Score=50.49 Aligned_cols=54 Identities=26% Similarity=0.376 Sum_probs=47.5
Q ss_pred ccHHHHHHHHhHHHhCCCeEEEEechhhHHHHHHHHHHhcCCeEEEeeCCcccCCC
Q psy2047 178 GKLKKLDEILPDLKKNGHRVLIFSQFIFVLDILGHYMDIRGWRHLRLDGATQVSSR 233 (233)
Q Consensus 178 ~Kl~~l~~lL~~~~~~~~KvlIFSq~~~~Ld~l~~~l~~~gi~~~rldG~~~~~~R 233 (233)
.|+..|..++.... ..++|||+.-....+.|...|...|++...|+|++++.+|
T Consensus 259 ~k~~~L~~ll~~~~--~~~~IVF~~tk~~~~~l~~~l~~~g~~~~~lhG~l~q~~R 312 (513)
T COG0513 259 EKLELLLKLLKDED--EGRVIVFVRTKRLVEELAESLRKRGFKVAALHGDLPQEER 312 (513)
T ss_pred HHHHHHHHHHhcCC--CCeEEEEeCcHHHHHHHHHHHHHCCCeEEEecCCCCHHHH
Confidence 48888888887643 2379999999999999999999999999999999998766
No 35
>PRK05298 excinuclease ABC subunit B; Provisional
Probab=95.09 E-value=0.046 Score=50.28 Aligned_cols=56 Identities=18% Similarity=0.198 Sum_probs=50.9
Q ss_pred cccHHHHHHHHhHHHhCCCeEEEEechhhHHHHHHHHHHhcCCeEEEeeCCcccCC
Q psy2047 177 SGKLKKLDEILPDLKKNGHRVLIFSQFIFVLDILGHYMDIRGWRHLRLDGATQVSS 232 (233)
Q Consensus 177 s~Kl~~l~~lL~~~~~~~~KvlIFSq~~~~Ld~l~~~l~~~gi~~~rldG~~~~~~ 232 (233)
.+++..+++.|..+...|.++|||+......+.|...|...|+++..++|.++..+
T Consensus 429 ~~q~~~L~~~L~~~~~~g~~viIf~~t~~~ae~L~~~L~~~gi~~~~~h~~~~~~~ 484 (652)
T PRK05298 429 KGQVDDLLSEIRKRVAKGERVLVTTLTKRMAEDLTDYLKELGIKVRYLHSDIDTLE 484 (652)
T ss_pred cccHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHhhcceeEEEEECCCCHHH
Confidence 57788999999998888999999999999999999999999999999999887543
No 36
>PRK04837 ATP-dependent RNA helicase RhlB; Provisional
Probab=95.00 E-value=0.05 Score=47.34 Aligned_cols=55 Identities=18% Similarity=0.241 Sum_probs=46.8
Q ss_pred cccHHHHHHHHhHHHhCCCeEEEEechhhHHHHHHHHHHhcCCeEEEeeCCcccCCC
Q psy2047 177 SGKLKKLDEILPDLKKNGHRVLIFSQFIFVLDILGHYMDIRGWRHLRLDGATQVSSR 233 (233)
Q Consensus 177 s~Kl~~l~~lL~~~~~~~~KvlIFSq~~~~Ld~l~~~l~~~gi~~~rldG~~~~~~R 233 (233)
..|+..+..++.. ..+.|+|||+......+.|...|...|++...++|+++.++|
T Consensus 240 ~~k~~~l~~ll~~--~~~~~~lVF~~t~~~~~~l~~~L~~~g~~v~~lhg~~~~~~R 294 (423)
T PRK04837 240 EEKMRLLQTLIEE--EWPDRAIIFANTKHRCEEIWGHLAADGHRVGLLTGDVAQKKR 294 (423)
T ss_pred HHHHHHHHHHHHh--cCCCeEEEEECCHHHHHHHHHHHHhCCCcEEEecCCCChhHH
Confidence 4577777777654 235799999999999999999999999999999999998765
No 37
>KOG0330|consensus
Probab=94.99 E-value=0.025 Score=47.78 Aligned_cols=55 Identities=24% Similarity=0.332 Sum_probs=47.6
Q ss_pred cccHHHHHHHHhHHHhCCCeEEEEechhhHHHHHHHHHHhcCCeEEEeeCCcccCCC
Q psy2047 177 SGKLKKLDEILPDLKKNGHRVLIFSQFIFVLDILGHYMDIRGWRHLRLDGATQVSSR 233 (233)
Q Consensus 177 s~Kl~~l~~lL~~~~~~~~KvlIFSq~~~~Ld~l~~~l~~~gi~~~rldG~~~~~~R 233 (233)
--|-..|+.+|++.. |.-+||||.-..+-+.+..+|...|+....|+|.|++..|
T Consensus 285 k~K~~yLV~ll~e~~--g~s~iVF~~t~~tt~~la~~L~~lg~~a~~LhGqmsq~~R 339 (476)
T KOG0330|consen 285 KDKDTYLVYLLNELA--GNSVIVFCNTCNTTRFLALLLRNLGFQAIPLHGQMSQSKR 339 (476)
T ss_pred cccchhHHHHHHhhc--CCcEEEEEeccchHHHHHHHHHhcCcceecccchhhHHHH
Confidence 445667777777654 5789999999999999999999999999999999999876
No 38
>TIGR00631 uvrb excinuclease ABC, B subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University)
Probab=94.88 E-value=0.05 Score=49.94 Aligned_cols=56 Identities=16% Similarity=0.164 Sum_probs=50.9
Q ss_pred cccHHHHHHHHhHHHhCCCeEEEEechhhHHHHHHHHHHhcCCeEEEeeCCcccCC
Q psy2047 177 SGKLKKLDEILPDLKKNGHRVLIFSQFIFVLDILGHYMDIRGWRHLRLDGATQVSS 232 (233)
Q Consensus 177 s~Kl~~l~~lL~~~~~~~~KvlIFSq~~~~Ld~l~~~l~~~gi~~~rldG~~~~~~ 232 (233)
.+++..+.+.|..+...|.++|||+......+.|...|...|+++..++|.++..+
T Consensus 425 ~~qi~~Ll~eI~~~~~~g~~vLIf~~tk~~ae~L~~~L~~~gi~~~~lh~~~~~~e 480 (655)
T TIGR00631 425 DGQVDDLLSEIRQRVARNERVLVTTLTKKMAEDLTDYLKELGIKVRYLHSEIDTLE 480 (655)
T ss_pred cchHHHHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHhhhccceeeeeCCCCHHH
Confidence 67888999999888888999999999999999999999999999999999887543
No 39
>PRK13104 secA preprotein translocase subunit SecA; Reviewed
Probab=94.85 E-value=0.053 Score=50.88 Aligned_cols=56 Identities=14% Similarity=0.145 Sum_probs=52.0
Q ss_pred cccHHHHHHHHhHHHhCCCeEEEEechhhHHHHHHHHHHhcCCeEEEeeCCcccCC
Q psy2047 177 SGKLKKLDEILPDLKKNGHRVLIFSQFIFVLDILGHYMDIRGWRHLRLDGATQVSS 232 (233)
Q Consensus 177 s~Kl~~l~~lL~~~~~~~~KvlIFSq~~~~Ld~l~~~l~~~gi~~~rldG~~~~~~ 232 (233)
..|+.++++.+.++...|.-|||||.++..-+.|..+|.+.||++..|+|..+..+
T Consensus 427 ~~k~~av~~~i~~~~~~g~PVLVgt~Sie~sE~ls~~L~~~gi~h~vLnak~~q~E 482 (896)
T PRK13104 427 ADKFQAIIEDVRECGVRKQPVLVGTVSIEASEFLSQLLKKENIKHQVLNAKFHEKE 482 (896)
T ss_pred HHHHHHHHHHHHHHHhCCCCEEEEeCcHHHHHHHHHHHHHcCCCeEeecCCCChHH
Confidence 57999999999998899999999999999999999999999999999999987654
No 40
>KOG0298|consensus
Probab=94.82 E-value=0.026 Score=54.06 Aligned_cols=85 Identities=20% Similarity=0.304 Sum_probs=58.8
Q ss_pred HHHHHHhhhhhhhhcchhhhhhc--CCCceEEEEEeeCCHHHHHHHHHHH----HHHhhhcC-----CCCCCC-------
Q psy2047 26 VDQAKRIISPFMLRRLKKDVLTE--LPKKTALVIKVPMIPSQAEKYRGLM----EDFKKTAN-----PEGSNR------- 87 (233)
Q Consensus 26 ~~~L~~~l~~~~lRRtk~~~~~~--LP~k~e~~v~v~ls~~q~~lY~~~~----~~~~~~~~-----~~~~~~------- 87 (233)
-..+..+.+..+-|+-|..+..+ +||-++.+.+..+++.|-..|+.-. ..+...+. .....+
T Consensus 589 ~~~~~dl~~q~l~R~~k~~v~~el~~ppq~e~~h~~~~sa~~s~v~r~~~~t~v~e~~~~~~~~k~~~l~~~sd~~~l~~ 668 (1394)
T KOG0298|consen 589 CEPLLDLFKQLLWRTFKSKVEHELGLPPQTEVVHRLELSAVESHVYREEHFTCVEEFAAAVEKLKRHNLDNSSDLASLSP 668 (1394)
T ss_pred hhhHHHHHHhhhhhhhhHHHHHHhCCCchHHHHHHHHhcchhhhhhHHHHhhHHHHHHHHHHHHHHhccccccccccCCh
Confidence 34788999999999999988764 8999999999999988887777542 22221111 111111
Q ss_pred CccchhhHHHHHHHHhhccccch
Q psy2047 88 SNEISHMSMFMMLRKMANHPLGL 110 (233)
Q Consensus 88 ~~~~~~l~~l~~Lr~~c~hp~l~ 110 (233)
.....++..+.+|||+|+||-.-
T Consensus 669 ~~~a~i~~~l~rLRq~Cchplv~ 691 (1394)
T KOG0298|consen 669 QLLAIILKWLLRLRQACCHPLVG 691 (1394)
T ss_pred hhHHHHHHHHHHHHHhhcccccc
Confidence 12234568899999999999653
No 41
>PRK13107 preprotein translocase subunit SecA; Reviewed
Probab=94.67 E-value=0.058 Score=50.61 Aligned_cols=56 Identities=18% Similarity=0.163 Sum_probs=51.9
Q ss_pred cccHHHHHHHHhHHHhCCCeEEEEechhhHHHHHHHHHHhcCCeEEEeeCCcccCC
Q psy2047 177 SGKLKKLDEILPDLKKNGHRVLIFSQFIFVLDILGHYMDIRGWRHLRLDGATQVSS 232 (233)
Q Consensus 177 s~Kl~~l~~lL~~~~~~~~KvlIFSq~~~~Ld~l~~~l~~~gi~~~rldG~~~~~~ 232 (233)
..|..++++-+.++.+.|..||||+.++..-+.|..+|...||++..|+|..+..+
T Consensus 432 ~~K~~Aii~ei~~~~~~GrpVLV~t~sv~~se~ls~~L~~~gi~~~vLnak~~~~E 487 (908)
T PRK13107 432 DEKYQAIIKDIKDCRERGQPVLVGTVSIEQSELLARLMVKEKIPHEVLNAKFHERE 487 (908)
T ss_pred HHHHHHHHHHHHHHHHcCCCEEEEeCcHHHHHHHHHHHHHCCCCeEeccCcccHHH
Confidence 68999999999999899999999999999999999999999999999999977654
No 42
>PRK01297 ATP-dependent RNA helicase RhlB; Provisional
Probab=94.44 E-value=0.069 Score=47.22 Aligned_cols=56 Identities=20% Similarity=0.218 Sum_probs=46.4
Q ss_pred ccccHHHHHHHHhHHHhCCCeEEEEechhhHHHHHHHHHHhcCCeEEEeeCCcccCCC
Q psy2047 176 ESGKLKKLDEILPDLKKNGHRVLIFSQFIFVLDILGHYMDIRGWRHLRLDGATQVSSR 233 (233)
Q Consensus 176 ~s~Kl~~l~~lL~~~~~~~~KvlIFSq~~~~Ld~l~~~l~~~gi~~~rldG~~~~~~R 233 (233)
.+.|...+.+++.. ....|+|||+......+.|...|...|+....++|+++..+|
T Consensus 319 ~~~k~~~l~~ll~~--~~~~~~IVF~~s~~~~~~l~~~L~~~~~~~~~~~g~~~~~~R 374 (475)
T PRK01297 319 GSDKYKLLYNLVTQ--NPWERVMVFANRKDEVRRIEERLVKDGINAAQLSGDVPQHKR 374 (475)
T ss_pred chhHHHHHHHHHHh--cCCCeEEEEeCCHHHHHHHHHHHHHcCCCEEEEECCCCHHHH
Confidence 35677777776654 234699999999999999999999999999999999987665
No 43
>PRK04537 ATP-dependent RNA helicase RhlB; Provisional
Probab=94.26 E-value=0.069 Score=48.37 Aligned_cols=55 Identities=20% Similarity=0.308 Sum_probs=46.3
Q ss_pred cccHHHHHHHHhHHHhCCCeEEEEechhhHHHHHHHHHHhcCCeEEEeeCCcccCCC
Q psy2047 177 SGKLKKLDEILPDLKKNGHRVLIFSQFIFVLDILGHYMDIRGWRHLRLDGATQVSSR 233 (233)
Q Consensus 177 s~Kl~~l~~lL~~~~~~~~KvlIFSq~~~~Ld~l~~~l~~~gi~~~rldG~~~~~~R 233 (233)
..|+..+..++.. ..+.++|||+......+.|...|...|+....++|+++..+|
T Consensus 242 ~~k~~~L~~ll~~--~~~~k~LVF~nt~~~ae~l~~~L~~~g~~v~~lhg~l~~~eR 296 (572)
T PRK04537 242 EEKQTLLLGLLSR--SEGARTMVFVNTKAFVERVARTLERHGYRVGVLSGDVPQKKR 296 (572)
T ss_pred HHHHHHHHHHHhc--ccCCcEEEEeCCHHHHHHHHHHHHHcCCCEEEEeCCCCHHHH
Confidence 4567777766654 246799999999999999999999999999999999988665
No 44
>PRK11192 ATP-dependent RNA helicase SrmB; Provisional
Probab=94.25 E-value=0.074 Score=46.38 Aligned_cols=54 Identities=19% Similarity=0.201 Sum_probs=44.3
Q ss_pred ccHHHHHHHHhHHHhCCCeEEEEechhhHHHHHHHHHHhcCCeEEEeeCCcccCCC
Q psy2047 178 GKLKKLDEILPDLKKNGHRVLIFSQFIFVLDILGHYMDIRGWRHLRLDGATQVSSR 233 (233)
Q Consensus 178 ~Kl~~l~~lL~~~~~~~~KvlIFSq~~~~Ld~l~~~l~~~gi~~~rldG~~~~~~R 233 (233)
.|...+..+++. ....++|||+......+.|...|...|++...++|+++..+|
T Consensus 231 ~k~~~l~~l~~~--~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~l~g~~~~~~R 284 (434)
T PRK11192 231 HKTALLCHLLKQ--PEVTRSIVFVRTRERVHELAGWLRKAGINCCYLEGEMVQAKR 284 (434)
T ss_pred HHHHHHHHHHhc--CCCCeEEEEeCChHHHHHHHHHHHhCCCCEEEecCCCCHHHH
Confidence 456666555542 235699999999999999999999999999999999988765
No 45
>PRK12906 secA preprotein translocase subunit SecA; Reviewed
Probab=94.19 E-value=0.077 Score=49.40 Aligned_cols=55 Identities=20% Similarity=0.270 Sum_probs=50.2
Q ss_pred cccHHHHHHHHhHHHhCCCeEEEEechhhHHHHHHHHHHhcCCeEEEeeCCcccC
Q psy2047 177 SGKLKKLDEILPDLKKNGHRVLIFSQFIFVLDILGHYMDIRGWRHLRLDGATQVS 231 (233)
Q Consensus 177 s~Kl~~l~~lL~~~~~~~~KvlIFSq~~~~Ld~l~~~l~~~gi~~~rldG~~~~~ 231 (233)
..|..++.+.+.+....|..+||||.++..-+.|...|.+.|+++..|+|.+...
T Consensus 423 ~~K~~al~~~i~~~~~~g~pvLI~t~si~~se~ls~~L~~~gi~~~~Lna~~~~~ 477 (796)
T PRK12906 423 DSKFNAVVKEIKERHAKGQPVLVGTVAIESSERLSHLLDEAGIPHAVLNAKNHAK 477 (796)
T ss_pred HHHHHHHHHHHHHHHhCCCCEEEEeCcHHHHHHHHHHHHHCCCCeeEecCCcHHH
Confidence 5699999999988878899999999999999999999999999999999987643
No 46
>KOG0334|consensus
Probab=93.81 E-value=0.071 Score=50.20 Aligned_cols=57 Identities=25% Similarity=0.266 Sum_probs=52.0
Q ss_pred ccccHHHHHHHHhHHHhCCCeEEEEechhhHHHHHHHHHHhcCCeEEEeeCCcccCCC
Q psy2047 176 ESGKLKKLDEILPDLKKNGHRVLIFSQFIFVLDILGHYMDIRGWRHLRLDGATQVSSR 233 (233)
Q Consensus 176 ~s~Kl~~l~~lL~~~~~~~~KvlIFSq~~~~Ld~l~~~l~~~gi~~~rldG~~~~~~R 233 (233)
...|+..|.++|.+... ..|+|||++...-.|.|-.-|.+.|+.+..|+|..+...|
T Consensus 596 e~eKf~kL~eLl~e~~e-~~~tiiFv~~qe~~d~l~~~L~~ag~~~~slHGgv~q~dR 652 (997)
T KOG0334|consen 596 ENEKFLKLLELLGERYE-DGKTIIFVDKQEKADALLRDLQKAGYNCDSLHGGVDQHDR 652 (997)
T ss_pred chHHHHHHHHHHHHHhh-cCCEEEEEcCchHHHHHHHHHHhcCcchhhhcCCCchHHH
Confidence 58899999999999766 5699999999999999999999999999999999998665
No 47
>PRK11776 ATP-dependent RNA helicase DbpA; Provisional
Probab=93.79 E-value=0.11 Score=45.65 Aligned_cols=55 Identities=16% Similarity=0.282 Sum_probs=47.1
Q ss_pred cccHHHHHHHHhHHHhCCCeEEEEechhhHHHHHHHHHHhcCCeEEEeeCCcccCCC
Q psy2047 177 SGKLKKLDEILPDLKKNGHRVLIFSQFIFVLDILGHYMDIRGWRHLRLDGATQVSSR 233 (233)
Q Consensus 177 s~Kl~~l~~lL~~~~~~~~KvlIFSq~~~~Ld~l~~~l~~~gi~~~rldG~~~~~~R 233 (233)
..|+..+..+|... .+.++|||+......+.+...|...|+....++|+++..+|
T Consensus 227 ~~k~~~l~~ll~~~--~~~~~lVF~~t~~~~~~l~~~L~~~~~~v~~~hg~~~~~eR 281 (460)
T PRK11776 227 DERLPALQRLLLHH--QPESCVVFCNTKKECQEVADALNAQGFSALALHGDLEQRDR 281 (460)
T ss_pred HHHHHHHHHHHHhc--CCCceEEEECCHHHHHHHHHHHHhCCCcEEEEeCCCCHHHH
Confidence 34788888877543 35689999999999999999999999999999999998655
No 48
>PRK12904 preprotein translocase subunit SecA; Reviewed
Probab=93.59 E-value=0.19 Score=47.16 Aligned_cols=51 Identities=22% Similarity=0.254 Sum_probs=47.9
Q ss_pred cccHHHHHHHHhHHHhCCCeEEEEechhhHHHHHHHHHHhcCCeEEEeeCC
Q psy2047 177 SGKLKKLDEILPDLKKNGHRVLIFSQFIFVLDILGHYMDIRGWRHLRLDGA 227 (233)
Q Consensus 177 s~Kl~~l~~lL~~~~~~~~KvlIFSq~~~~Ld~l~~~l~~~gi~~~rldG~ 227 (233)
..|+.++.+.+.++...|..|||||.++..-+.|...|.+.|+++..|+|.
T Consensus 413 ~~K~~aI~~~I~~~~~~grpVLIft~Si~~se~Ls~~L~~~gi~~~vLnak 463 (830)
T PRK12904 413 KEKFDAVVEDIKERHKKGQPVLVGTVSIEKSELLSKLLKKAGIPHNVLNAK 463 (830)
T ss_pred HHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHCCCceEeccCc
Confidence 579999999998888889999999999999999999999999999999996
No 49
>TIGR00963 secA preprotein translocase, SecA subunit. The proteins SecA-F and SecY, not all of which are necessary, comprise the standard prokaryotic protein translocation apparatus. Other, specialized translocation systems also exist but are not as broadly distributed. This model describes SecA, an essential member of the apparatus.
Probab=93.44 E-value=0.23 Score=46.00 Aligned_cols=51 Identities=20% Similarity=0.271 Sum_probs=47.6
Q ss_pred cccHHHHHHHHhHHHhCCCeEEEEechhhHHHHHHHHHHhcCCeEEEeeCC
Q psy2047 177 SGKLKKLDEILPDLKKNGHRVLIFSQFIFVLDILGHYMDIRGWRHLRLDGA 227 (233)
Q Consensus 177 s~Kl~~l~~lL~~~~~~~~KvlIFSq~~~~Ld~l~~~l~~~gi~~~rldG~ 227 (233)
..|+.++.+.+.+....|..+||||.++..-+.|...|.+.|+++..|+|.
T Consensus 388 ~~k~~ai~~~i~~~~~~grpvLV~t~si~~se~ls~~L~~~gi~~~~Lna~ 438 (745)
T TIGR00963 388 EEKWKAVVDEIKERHAKGQPVLVGTTSVEKSELLSNLLKERGIPHNVLNAK 438 (745)
T ss_pred HHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHcCCCeEEeeCC
Confidence 468889988888888889999999999999999999999999999999997
No 50
>PRK12900 secA preprotein translocase subunit SecA; Reviewed
Probab=93.38 E-value=0.19 Score=47.70 Aligned_cols=51 Identities=20% Similarity=0.247 Sum_probs=47.7
Q ss_pred cccHHHHHHHHhHHHhCCCeEEEEechhhHHHHHHHHHHhcCCeEEEeeCC
Q psy2047 177 SGKLKKLDEILPDLKKNGHRVLIFSQFIFVLDILGHYMDIRGWRHLRLDGA 227 (233)
Q Consensus 177 s~Kl~~l~~lL~~~~~~~~KvlIFSq~~~~Ld~l~~~l~~~gi~~~rldG~ 227 (233)
..|+.++++.+.+....|..+|||+.++..-+.|..+|...||++..|++.
T Consensus 581 ~eK~~Ali~~I~~~~~~grpVLIft~Sve~sE~Ls~~L~~~gI~h~vLnak 631 (1025)
T PRK12900 581 REKYNAIVLKVEELQKKGQPVLVGTASVEVSETLSRMLRAKRIAHNVLNAK 631 (1025)
T ss_pred HHHHHHHHHHHHHHhhCCCCEEEEeCcHHHHHHHHHHHHHcCCCceeecCC
Confidence 469999999999888889999999999999999999999999999999974
No 51
>KOG0339|consensus
Probab=92.77 E-value=0.13 Score=45.16 Aligned_cols=56 Identities=23% Similarity=0.329 Sum_probs=49.6
Q ss_pred cccHHHHHHHHhHHHhCCCeEEEEechhhHHHHHHHHHHhcCCeEEEeeCCcccCCC
Q psy2047 177 SGKLKKLDEILPDLKKNGHRVLIFSQFIFVLDILGHYMDIRGWRHLRLDGATQVSSR 233 (233)
Q Consensus 177 s~Kl~~l~~lL~~~~~~~~KvlIFSq~~~~Ld~l~~~l~~~gi~~~rldG~~~~~~R 233 (233)
..|+..|...|-+....| |||||..-....+-|+..|+.+|+++..++|++.+++|
T Consensus 452 ~~Kl~wl~~~L~~f~S~g-kvlifVTKk~~~e~i~a~Lklk~~~v~llhgdkdqa~r 507 (731)
T KOG0339|consen 452 EKKLNWLLRHLVEFSSEG-KVLIFVTKKADAEEIAANLKLKGFNVSLLHGDKDQAER 507 (731)
T ss_pred HHHHHHHHHHhhhhccCC-cEEEEEeccCCHHHHHHHhccccceeeeecCchhhHHH
Confidence 579999988887765544 99999999999999999999999999999999988766
No 52
>KOG0298|consensus
Probab=92.75 E-value=0.12 Score=49.75 Aligned_cols=50 Identities=18% Similarity=0.159 Sum_probs=42.8
Q ss_pred cccHHHHHHHHhHHHhC--CCeEEEEechhhHHHHHHHHHHhcCCeEEEeeC
Q psy2047 177 SGKLKKLDEILPDLKKN--GHRVLIFSQFIFVLDILGHYMDIRGWRHLRLDG 226 (233)
Q Consensus 177 s~Kl~~l~~lL~~~~~~--~~KvlIFSq~~~~Ld~l~~~l~~~gi~~~rldG 226 (233)
++|+..+...+..+... -+|+||||||...||.++..+..++|.+.+..|
T Consensus 1202 g~kI~~v~~~il~iK~k~~qekvIvfsqws~~ldV~e~~~~~N~I~~~~~~~ 1253 (1394)
T KOG0298|consen 1202 GTKIDSVVIAILYIKFKNEQEKVIVFSQWSVVLDVKELRYLMNLIKKQLDGE 1253 (1394)
T ss_pred ccCchhHHHHHHHHhccCcCceEEEEEehHHHHHHHHHHHHhhhhHhhhccC
Confidence 89999998887777544 469999999999999999999999999766554
No 53
>KOG0328|consensus
Probab=92.44 E-value=0.19 Score=40.89 Aligned_cols=54 Identities=19% Similarity=0.205 Sum_probs=46.6
Q ss_pred ccHHHHHHHHhHHHhCCCeEEEEechhhHHHHHHHHHHhcCCeEEEeeCCcccCCC
Q psy2047 178 GKLKKLDEILPDLKKNGHRVLIFSQFIFVLDILGHYMDIRGWRHLRLDGATQVSSR 233 (233)
Q Consensus 178 ~Kl~~l~~lL~~~~~~~~KvlIFSq~~~~Ld~l~~~l~~~gi~~~rldG~~~~~~R 233 (233)
=|+..|-++-..+. -...||||.-....|+|...+...++....++|+|++++|
T Consensus 252 wKfdtLcdLYd~Lt--ItQavIFcnTk~kVdwLtekm~~~nftVssmHGDm~qkER 305 (400)
T KOG0328|consen 252 WKFDTLCDLYDTLT--ITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMEQKER 305 (400)
T ss_pred hhHhHHHHHhhhhe--hheEEEEecccchhhHHHHHHHhhCceeeeccCCcchhHH
Confidence 37777777766652 2479999999999999999999999999999999999886
No 54
>PLN00206 DEAD-box ATP-dependent RNA helicase; Provisional
Probab=92.04 E-value=0.22 Score=44.57 Aligned_cols=57 Identities=21% Similarity=0.335 Sum_probs=46.9
Q ss_pred cccHHHHHHHHhHHHhCCCeEEEEechhhHHHHHHHHHHh-cCCeEEEeeCCcccCCC
Q psy2047 177 SGKLKKLDEILPDLKKNGHRVLIFSQFIFVLDILGHYMDI-RGWRHLRLDGATQVSSR 233 (233)
Q Consensus 177 s~Kl~~l~~lL~~~~~~~~KvlIFSq~~~~Ld~l~~~l~~-~gi~~~rldG~~~~~~R 233 (233)
..|...+.++|........++|||+......+.|...|.. .|+.+..++|+++.++|
T Consensus 350 ~~k~~~l~~~l~~~~~~~~~~iVFv~s~~~a~~l~~~L~~~~g~~~~~~Hg~~~~~eR 407 (518)
T PLN00206 350 KQKKQKLFDILKSKQHFKPPAVVFVSSRLGADLLANAITVVTGLKALSIHGEKSMKER 407 (518)
T ss_pred hhHHHHHHHHHHhhcccCCCEEEEcCCchhHHHHHHHHhhccCcceEEeeCCCCHHHH
Confidence 4567777888876544456899999999999999999975 69999999999987665
No 55
>KOG0342|consensus
Probab=91.72 E-value=0.3 Score=42.57 Aligned_cols=56 Identities=13% Similarity=0.236 Sum_probs=48.1
Q ss_pred cccHHHHHHHHhHHHhCCCeEEEEechhhHHHHHHHHHHhcCCeEEEeeCCcccCCC
Q psy2047 177 SGKLKKLDEILPDLKKNGHRVLIFSQFIFVLDILGHYMDIRGWRHLRLDGATQVSSR 233 (233)
Q Consensus 177 s~Kl~~l~~lL~~~~~~~~KvlIFSq~~~~Ld~l~~~l~~~gi~~~rldG~~~~~~R 233 (233)
..++.++..+|++-..+ -|++||+....+..+....|....+++.-|+|+.++..|
T Consensus 314 ~~~f~ll~~~LKk~~~~-~KiiVF~sT~~~vk~~~~lL~~~dlpv~eiHgk~~Q~kR 369 (543)
T KOG0342|consen 314 DSRFSLLYTFLKKNIKR-YKIIVFFSTCMSVKFHAELLNYIDLPVLEIHGKQKQNKR 369 (543)
T ss_pred cchHHHHHHHHHHhcCC-ceEEEEechhhHHHHHHHHHhhcCCchhhhhcCCccccc
Confidence 34567777888765433 799999999999999999999999999999999998877
No 56
>PRK10590 ATP-dependent RNA helicase RhlE; Provisional
Probab=91.67 E-value=0.29 Score=43.08 Aligned_cols=40 Identities=20% Similarity=0.319 Sum_probs=36.7
Q ss_pred CCeEEEEechhhHHHHHHHHHHhcCCeEEEeeCCcccCCC
Q psy2047 194 GHRVLIFSQFIFVLDILGHYMDIRGWRHLRLDGATQVSSR 233 (233)
Q Consensus 194 ~~KvlIFSq~~~~Ld~l~~~l~~~gi~~~rldG~~~~~~R 233 (233)
..++|||+......+.|...|...|+....++|+++.++|
T Consensus 245 ~~~~lVF~~t~~~~~~l~~~L~~~g~~~~~lhg~~~~~~R 284 (456)
T PRK10590 245 WQQVLVFTRTKHGANHLAEQLNKDGIRSAAIHGNKSQGAR 284 (456)
T ss_pred CCcEEEEcCcHHHHHHHHHHHHHCCCCEEEEECCCCHHHH
Confidence 4599999999999999999999999999999999987655
No 57
>TIGR01587 cas3_core CRISPR-associated helicase Cas3. This model represents the highly conserved core region of an alignment of Cas3, a protein found in association with CRISPR repeat elements in a broad range of bacteria and archaea. Cas3 appears to be a helicase, with regions found by pfam00270 (DEAD/DEAH box helicase) and pfam00271 (Helicase conserved C-terminal domain). Some but not all members have an N-terminal HD domain region (pfam01966) that is not included within this model.
Probab=91.13 E-value=0.56 Score=39.69 Aligned_cols=55 Identities=15% Similarity=0.187 Sum_probs=44.7
Q ss_pred ccHHHHHHHHhHHHhCCCeEEEEechhhHHHHHHHHHHhcCC--eEEEeeCCcccCCC
Q psy2047 178 GKLKKLDEILPDLKKNGHRVLIFSQFIFVLDILGHYMDIRGW--RHLRLDGATQVSSR 233 (233)
Q Consensus 178 ~Kl~~l~~lL~~~~~~~~KvlIFSq~~~~Ld~l~~~l~~~gi--~~~rldG~~~~~~R 233 (233)
.|...+.++++.+ ..+.++|||+..+...+.+...|++.+. ....++|+++..+|
T Consensus 207 ~~~~~l~~l~~~~-~~~~~~lVf~~t~~~~~~~~~~L~~~~~~~~~~~~h~~~~~~~r 263 (358)
T TIGR01587 207 GEISSLERLLEFI-KKGGKIAIIVNTVDRAQEFYQQLKENAPEEEIMLLHSRFTEKDR 263 (358)
T ss_pred cCHHHHHHHHHHh-hCCCeEEEEECCHHHHHHHHHHHHhhcCCCeEEEEECCCCHHHH
Confidence 5677777777544 4567999999999999999999988876 48999999987654
No 58
>KOG0341|consensus
Probab=90.85 E-value=0.37 Score=40.98 Aligned_cols=59 Identities=25% Similarity=0.364 Sum_probs=49.4
Q ss_pred hhhhccccHHHHHHHHhHHHhCCCeEEEEechhhHHHHHHHHHHhcCCeEEEeeCCcccCCC
Q psy2047 172 DLVVESGKLKKLDEILPDLKKNGHRVLIFSQFIFVLDILGHYMDIRGWRHLRLDGATQVSSR 233 (233)
Q Consensus 172 ~~~~~s~Kl~~l~~lL~~~~~~~~KvlIFSq~~~~Ld~l~~~l~~~gi~~~rldG~~~~~~R 233 (233)
+.....+|+..|++ .+++..-+||||+.-..-.|-|-.+|--+|...+-|+|+-++++|
T Consensus 402 EyVkqEaKiVylLe---CLQKT~PpVLIFaEkK~DVD~IhEYLLlKGVEavaIHGGKDQedR 460 (610)
T KOG0341|consen 402 EYVKQEAKIVYLLE---CLQKTSPPVLIFAEKKADVDDIHEYLLLKGVEAVAIHGGKDQEDR 460 (610)
T ss_pred HHHHhhhhhhhHHH---HhccCCCceEEEeccccChHHHHHHHHHccceeEEeecCcchhHH
Confidence 44666788777654 445567799999999999999999999999999999999888765
No 59
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=90.82 E-value=0.44 Score=43.74 Aligned_cols=55 Identities=16% Similarity=0.178 Sum_probs=46.6
Q ss_pred cccHHHHHHHHhHHHhCCCeEEEEechhhHHHHHHHHHHhcCCeEEEeeCCcccCCC
Q psy2047 177 SGKLKKLDEILPDLKKNGHRVLIFSQFIFVLDILGHYMDIRGWRHLRLDGATQVSSR 233 (233)
Q Consensus 177 s~Kl~~l~~lL~~~~~~~~KvlIFSq~~~~Ld~l~~~l~~~gi~~~rldG~~~~~~R 233 (233)
..|..+|..+|.. ....++|||+......+.|...|...|+....++|.++..+|
T Consensus 230 ~~k~~~L~~~L~~--~~~~~~IVF~~tk~~a~~l~~~L~~~g~~~~~lhgd~~q~~R 284 (629)
T PRK11634 230 MRKNEALVRFLEA--EDFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALR 284 (629)
T ss_pred hhHHHHHHHHHHh--cCCCCEEEEeccHHHHHHHHHHHHhCCCCEEEeeCCCCHHHH
Confidence 4577888777754 234689999999999999999999999999999999988654
No 60
>TIGR01389 recQ ATP-dependent DNA helicase RecQ. The ATP-dependent DNA helicase RecQ of E. coli is about 600 residues long. This model represents bacterial proteins with a high degree of similarity in domain architecture and in primary sequence to E. coli RecQ. The model excludes eukaryotic and archaeal proteins with RecQ-like regions, as well as more distantly related bacterial helicases related to RecQ.
Probab=90.38 E-value=0.47 Score=43.21 Aligned_cols=55 Identities=18% Similarity=0.205 Sum_probs=45.4
Q ss_pred cccHHHHHHHHhHHHhCCCeEEEEechhhHHHHHHHHHHhcCCeEEEeeCCcccCCC
Q psy2047 177 SGKLKKLDEILPDLKKNGHRVLIFSQFIFVLDILGHYMDIRGWRHLRLDGATQVSSR 233 (233)
Q Consensus 177 s~Kl~~l~~lL~~~~~~~~KvlIFSq~~~~Ld~l~~~l~~~gi~~~rldG~~~~~~R 233 (233)
..+...+.+.|... .+.+.|||+......+.+...|...|+++..++|+++.++|
T Consensus 209 ~~~~~~l~~~l~~~--~~~~~IIf~~sr~~~e~la~~L~~~g~~~~~~H~~l~~~~R 263 (591)
T TIGR01389 209 NNKQKFLLDYLKKH--RGQSGIIYASSRKKVEELAERLESQGISALAYHAGLSNKVR 263 (591)
T ss_pred CCHHHHHHHHHHhc--CCCCEEEEECcHHHHHHHHHHHHhCCCCEEEEECCCCHHHH
Confidence 45666666666542 26799999999999999999999999999999999987654
No 61
>TIGR03158 cas3_cyano CRISPR-associated helicase, Cyano-type. subtype of CRISPR/Cas locus, found in several species of Cyanobacteria and several archaeal species. It contains helicase motifs and appears to represent the Cas3 protein of the Cyano subtype of CRISPR/Cas system.
Probab=90.26 E-value=0.71 Score=39.27 Aligned_cols=56 Identities=20% Similarity=0.185 Sum_probs=41.5
Q ss_pred ccHHHHHHHHhHHH-----hCCCeEEEEechhhHHHHHHHHHHhcC--CeEEEeeCCcccCCC
Q psy2047 178 GKLKKLDEILPDLK-----KNGHRVLIFSQFIFVLDILGHYMDIRG--WRHLRLDGATQVSSR 233 (233)
Q Consensus 178 ~Kl~~l~~lL~~~~-----~~~~KvlIFSq~~~~Ld~l~~~l~~~g--i~~~rldG~~~~~~R 233 (233)
.|...+..+++.+. ..+.|+|||+......+.+...|+..| +.+..++|.++..+|
T Consensus 251 ~~~~~l~~l~~~i~~~~~~~~~~k~LIf~nt~~~~~~l~~~L~~~~~~~~~~~l~g~~~~~~R 313 (357)
T TIGR03158 251 FKEEELSELAEEVIERFRQLPGERGAIILDSLDEVNRLSDLLQQQGLGDDIGRITGFAPKKDR 313 (357)
T ss_pred hhHHHHHHHHHHHHHHHhccCCCeEEEEECCHHHHHHHHHHHhhhCCCceEEeeecCCCHHHH
Confidence 34444444444432 246799999999999999999999865 578899999887654
No 62
>TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=89.83 E-value=0.58 Score=41.36 Aligned_cols=41 Identities=12% Similarity=0.106 Sum_probs=37.0
Q ss_pred CCCeEEEEechhhHHHHHHHHHHhcCCeEEEeeCCcccCCC
Q psy2047 193 NGHRVLIFSQFIFVLDILGHYMDIRGWRHLRLDGATQVSSR 233 (233)
Q Consensus 193 ~~~KvlIFSq~~~~Ld~l~~~l~~~gi~~~rldG~~~~~~R 233 (233)
.+.+.|||+......+.+...|...|+....++|+++.++|
T Consensus 225 ~~~~~IIF~~s~~~~e~la~~L~~~g~~~~~~H~~l~~~eR 265 (470)
T TIGR00614 225 KGKSGIIYCPSRKKSEQVTASLQNLGIAAGAYHAGLEISAR 265 (470)
T ss_pred CCCceEEEECcHHHHHHHHHHHHhcCCCeeEeeCCCCHHHH
Confidence 35577999999999999999999999999999999987665
No 63
>PRK11057 ATP-dependent DNA helicase RecQ; Provisional
Probab=89.81 E-value=0.56 Score=42.93 Aligned_cols=53 Identities=13% Similarity=0.180 Sum_probs=42.7
Q ss_pred cHHHHHHHHhHHHhCCCeEEEEechhhHHHHHHHHHHhcCCeEEEeeCCcccCCC
Q psy2047 179 KLKKLDEILPDLKKNGHRVLIFSQFIFVLDILGHYMDIRGWRHLRLDGATQVSSR 233 (233)
Q Consensus 179 Kl~~l~~lL~~~~~~~~KvlIFSq~~~~Ld~l~~~l~~~gi~~~rldG~~~~~~R 233 (233)
++..+...+.. ..+.++|||+..+...+.+...|...|+....++|+++.++|
T Consensus 223 ~~~~l~~~l~~--~~~~~~IIFc~tr~~~e~la~~L~~~g~~v~~~Ha~l~~~~R 275 (607)
T PRK11057 223 PLDQLMRYVQE--QRGKSGIIYCNSRAKVEDTAARLQSRGISAAAYHAGLDNDVR 275 (607)
T ss_pred hHHHHHHHHHh--cCCCCEEEEECcHHHHHHHHHHHHhCCCCEEEecCCCCHHHH
Confidence 44444444432 346799999999999999999999999999999999987665
No 64
>PTZ00424 helicase 45; Provisional
Probab=88.64 E-value=0.73 Score=39.62 Aligned_cols=53 Identities=19% Similarity=0.258 Sum_probs=42.0
Q ss_pred cHHHHHHHHhHHHhCCCeEEEEechhhHHHHHHHHHHhcCCeEEEeeCCcccCCC
Q psy2047 179 KLKKLDEILPDLKKNGHRVLIFSQFIFVLDILGHYMDIRGWRHLRLDGATQVSSR 233 (233)
Q Consensus 179 Kl~~l~~lL~~~~~~~~KvlIFSq~~~~Ld~l~~~l~~~gi~~~rldG~~~~~~R 233 (233)
|...+..++... ...++|||+......+.+...|...|+....++|+++.++|
T Consensus 254 ~~~~l~~~~~~~--~~~~~ivF~~t~~~~~~l~~~l~~~~~~~~~~h~~~~~~~R 306 (401)
T PTZ00424 254 KFDTLCDLYETL--TITQAIIYCNTRRKVDYLTKKMHERDFTVSCMHGDMDQKDR 306 (401)
T ss_pred HHHHHHHHHHhc--CCCeEEEEecCcHHHHHHHHHHHHCCCcEEEEeCCCCHHHH
Confidence 444444444332 24699999999999999999999999999999999987655
No 65
>TIGR02621 cas3_GSU0051 CRISPR-associated helicase Cas3, Anaes-subtype. This model describes a CRISPR-associated putative DEAH-box helicase, or Cas3, of a subtype found in Actinomyces naeslundii MG1, Geobacter sulfurreducens PCA, Gemmata obscuriglobus UQM 2246, and Desulfotalea psychrophila. This protein includes both DEAH and HD motifs.
Probab=88.62 E-value=0.86 Score=43.02 Aligned_cols=53 Identities=19% Similarity=0.197 Sum_probs=41.6
Q ss_pred cHHHHHHHHhHH-HhCCCeEEEEechhhHHHHHHHHHHhcCCeEEEeeCCcccCCC
Q psy2047 179 KLKKLDEILPDL-KKNGHRVLIFSQFIFVLDILGHYMDIRGWRHLRLDGATQVSSR 233 (233)
Q Consensus 179 Kl~~l~~lL~~~-~~~~~KvlIFSq~~~~Ld~l~~~l~~~gi~~~rldG~~~~~~R 233 (233)
|+..+...+..+ ...+.++|||+..+...+.|...|.+.|+ ..|+|.|+..+|
T Consensus 256 Kl~~lv~~L~~ll~e~g~~vLVF~NTv~~Aq~L~~~L~~~g~--~lLHG~m~q~dR 309 (844)
T TIGR02621 256 FLSTMVKELNLLMKDSGGAILVFCRTVKHVRKVFAKLPKEKF--ELLTGTLRGAER 309 (844)
T ss_pred HHHHHHHHHHHHHhhCCCcEEEEECCHHHHHHHHHHHHhcCC--eEeeCCCCHHHH
Confidence 444444444333 34567999999999999999999999887 899999998765
No 66
>KOG0335|consensus
Probab=88.23 E-value=0.48 Score=41.50 Aligned_cols=60 Identities=22% Similarity=0.262 Sum_probs=50.9
Q ss_pred hhccccHHHHHHHHhHHH---hC----CCeEEEEechhhHHHHHHHHHHhcCCeEEEeeCCcccCCC
Q psy2047 174 VVESGKLKKLDEILPDLK---KN----GHRVLIFSQFIFVLDILGHYMDIRGWRHLRLDGATQVSSR 233 (233)
Q Consensus 174 ~~~s~Kl~~l~~lL~~~~---~~----~~KvlIFSq~~~~Ld~l~~~l~~~gi~~~rldG~~~~~~R 233 (233)
...+.|...|+++|.... .. .+|++||..-+.+.+.++.+|...|+++..|+|.-...+|
T Consensus 310 V~~~~kr~~Lldll~~~~~~~~~~~~~~e~tlvFvEt~~~~d~l~~~l~~~~~~~~sIhg~~tq~er 376 (482)
T KOG0335|consen 310 VNEMEKRSKLLDLLNKDDGPPSDGEPKWEKTLVFVETKRGADELAAFLSSNGYPAKSIHGDRTQIER 376 (482)
T ss_pred ecchhhHHHHHHHhhcccCCcccCCcccceEEEEeeccchhhHHHHHHhcCCCCceeecchhhhhHH
Confidence 455789999999998654 12 2499999999999999999999999999999999877654
No 67
>KOG0343|consensus
Probab=83.88 E-value=1.9 Score=38.57 Aligned_cols=56 Identities=16% Similarity=0.130 Sum_probs=45.5
Q ss_pred ccccHHHHHHHHhHHHhCCCeEEEEechhhHHHHHHHHHHh--cCCeEEEeeCCcccCCC
Q psy2047 176 ESGKLKKLDEILPDLKKNGHRVLIFSQFIFVLDILGHYMDI--RGWRHLRLDGATQVSSR 233 (233)
Q Consensus 176 ~s~Kl~~l~~lL~~~~~~~~KvlIFSq~~~~Ld~l~~~l~~--~gi~~~rldG~~~~~~R 233 (233)
..-|+.+|...|+.-. ..|+|||-..-.-..++-..+.+ .|++..-|+|+|++.+|
T Consensus 297 l~~Ki~~L~sFI~shl--k~K~iVF~SscKqvkf~~e~F~rlrpg~~l~~L~G~~~Q~~R 354 (758)
T KOG0343|consen 297 LEDKIDMLWSFIKSHL--KKKSIVFLSSCKQVKFLYEAFCRLRPGIPLLALHGTMSQKKR 354 (758)
T ss_pred hhhHHHHHHHHHHhcc--ccceEEEEehhhHHHHHHHHHHhcCCCCceeeeccchhHHHH
Confidence 3679999988886532 46999998888888888877765 49999999999998876
No 68
>KOG0340|consensus
Probab=83.20 E-value=2 Score=36.25 Aligned_cols=57 Identities=18% Similarity=0.167 Sum_probs=51.1
Q ss_pred cccHHHHHHHHhHHHh-CCCeEEEEechhhHHHHHHHHHHhcCCeEEEeeCCcccCCC
Q psy2047 177 SGKLKKLDEILPDLKK-NGHRVLIFSQFIFVLDILGHYMDIRGWRHLRLDGATQVSSR 233 (233)
Q Consensus 177 s~Kl~~l~~lL~~~~~-~~~KvlIFSq~~~~Ld~l~~~l~~~gi~~~rldG~~~~~~R 233 (233)
.+|-..+..+|..... .+.-++||.|-+.+=.+|...|+..+++.+-++|.|++++|
T Consensus 236 ~vkdaYLv~~Lr~~~~~~~~simIFvnttr~cQ~l~~~l~~le~r~~~lHs~m~Q~eR 293 (442)
T KOG0340|consen 236 DVKDAYLVHLLRDFENKENGSIMIFVNTTRECQLLSMTLKNLEVRVVSLHSQMPQKER 293 (442)
T ss_pred hhhHHHHHHHHhhhhhccCceEEEEeehhHHHHHHHHHHhhhceeeeehhhcchHHHH
Confidence 5788889999998866 35589999999999999999999999999999999999876
No 69
>KOG0326|consensus
Probab=82.17 E-value=0.7 Score=38.40 Aligned_cols=60 Identities=17% Similarity=0.293 Sum_probs=49.9
Q ss_pred hhhhccccHHHHHHHHhHHHhCCCeEEEEechhhHHHHHHHHHHhcCCeEEEeeCCcccCCC
Q psy2047 172 DLVVESGKLKKLDEILPDLKKNGHRVLIFSQFIFVLDILGHYMDIRGWRHLRLDGATQVSSR 233 (233)
Q Consensus 172 ~~~~~s~Kl~~l~~lL~~~~~~~~KvlIFSq~~~~Ld~l~~~l~~~gi~~~rldG~~~~~~R 233 (233)
..+.++-|+--|-.+..+++- ..+||||.++...++|...+...|+.+.-++..|.++.|
T Consensus 302 afV~e~qKvhCLntLfskLqI--NQsIIFCNS~~rVELLAkKITelGyscyyiHakM~Q~hR 361 (459)
T KOG0326|consen 302 AFVEERQKVHCLNTLFSKLQI--NQSIIFCNSTNRVELLAKKITELGYSCYYIHAKMAQEHR 361 (459)
T ss_pred eeechhhhhhhHHHHHHHhcc--cceEEEeccchHhHHHHHHHHhccchhhHHHHHHHHhhh
Confidence 345668888888888877753 379999999999999999999999999988888876654
No 70
>KOG0332|consensus
Probab=80.92 E-value=3.2 Score=35.33 Aligned_cols=55 Identities=22% Similarity=0.167 Sum_probs=46.3
Q ss_pred cccHHHHHHHHhHHHhCCCeEEEEechhhHHHHHHHHHHhcCCeEEEeeCCcccCCC
Q psy2047 177 SGKLKKLDEILPDLKKNGHRVLIFSQFIFVLDILGHYMDIRGWRHLRLDGATQVSSR 233 (233)
Q Consensus 177 s~Kl~~l~~lL~~~~~~~~KvlIFSq~~~~Ld~l~~~l~~~gi~~~rldG~~~~~~R 233 (233)
..|+.++.++-.-+ .- -..|||++-..+-.+|...+...|.....++|.+...+|
T Consensus 315 ~~K~~~l~~lyg~~-ti-gqsiIFc~tk~ta~~l~~~m~~~Gh~V~~l~G~l~~~~R 369 (477)
T KOG0332|consen 315 DDKYQALVNLYGLL-TI-GQSIIFCHTKATAMWLYEEMRAEGHQVSLLHGDLTVEQR 369 (477)
T ss_pred hhHHHHHHHHHhhh-hh-hheEEEEeehhhHHHHHHHHHhcCceeEEeeccchhHHH
Confidence 57888888855433 22 268999999999999999999999999999999988776
No 71
>KOG4284|consensus
Probab=79.77 E-value=1 Score=41.01 Aligned_cols=53 Identities=21% Similarity=0.295 Sum_probs=44.3
Q ss_pred cHHHHHHHHhHHHhCCCeEEEEechhhHHHHHHHHHHhcCCeEEEeeCCcccCCC
Q psy2047 179 KLKKLDEILPDLKKNGHRVLIFSQFIFVLDILGHYMDIRGWRHLRLDGATQVSSR 233 (233)
Q Consensus 179 Kl~~l~~lL~~~~~~~~KvlIFSq~~~~Ld~l~~~l~~~gi~~~rldG~~~~~~R 233 (233)
|++.|-.++..+- =...||||...+--+-|..+|+..|+++.-|.|.|++++|
T Consensus 259 klq~L~~vf~~ip--y~QAlVF~~~~sra~~~a~~L~ssG~d~~~ISgaM~Q~~R 311 (980)
T KOG4284|consen 259 KLQKLTHVFKSIP--YVQALVFCDQISRAEPIATHLKSSGLDVTFISGAMSQKDR 311 (980)
T ss_pred HHHHHHHHHhhCc--hHHHHhhhhhhhhhhHHHHHhhccCCCeEEeccccchhHH
Confidence 6666655555542 2478999999999999999999999999999999999887
No 72
>TIGR00596 rad1 DNA repair protein (rad1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford Universit
Probab=79.73 E-value=3.7 Score=38.92 Aligned_cols=45 Identities=20% Similarity=0.213 Sum_probs=37.0
Q ss_pred hccccHHHHHHHHhHHHhC---------CCeEEEEechhhHHHHHHHHHHhcCC
Q psy2047 175 VESGKLKKLDEILPDLKKN---------GHRVLIFSQFIFVLDILGHYMDIRGW 219 (233)
Q Consensus 175 ~~s~Kl~~l~~lL~~~~~~---------~~KvlIFSq~~~~Ld~l~~~l~~~gi 219 (233)
...+|+..|.++|+++... +.++||||++..|-..|..+|...++
T Consensus 267 Ee~PKw~~L~eiL~eI~~~~~~~~~~~~~~~iLI~~~d~~T~~qL~~~L~~~~~ 320 (814)
T TIGR00596 267 EENPKWEVLTDVLKEISHEMRMTNRLQGPGKVLIMCSDNRTCLQLRDYLTTSNK 320 (814)
T ss_pred ccCCCHHHHHHHHHHHHhHHhhhcccCCCCcEEEEEcchHHHHHHHHHHHhccc
Confidence 4689999999999887543 35899999999999999999965333
No 73
>TIGR00580 mfd transcription-repair coupling factor (mfd). All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families.
Probab=78.85 E-value=4 Score=39.38 Aligned_cols=43 Identities=14% Similarity=0.033 Sum_probs=37.3
Q ss_pred HhCCCeEEEEechhhHHHHHHHHHHhc--CCeEEEeeCCcccCCC
Q psy2047 191 KKNGHRVLIFSQFIFVLDILGHYMDIR--GWRHLRLDGATQVSSR 233 (233)
Q Consensus 191 ~~~~~KvlIFSq~~~~Ld~l~~~l~~~--gi~~~rldG~~~~~~R 233 (233)
...+.+++||+..+...+.+...|+.. ++++..++|+|+..+|
T Consensus 657 l~~g~qv~if~n~i~~~e~l~~~L~~~~p~~~v~~lHG~m~~~eR 701 (926)
T TIGR00580 657 LLRGGQVFYVHNRIESIEKLATQLRELVPEARIAIAHGQMTENEL 701 (926)
T ss_pred HHcCCeEEEEECCcHHHHHHHHHHHHhCCCCeEEEecCCCCHHHH
Confidence 345789999999999999999999874 8899999999987654
No 74
>KOG0336|consensus
Probab=78.42 E-value=1.4 Score=37.94 Aligned_cols=58 Identities=22% Similarity=0.357 Sum_probs=46.8
Q ss_pred hccccHHHHHHHHhHHHhCCCeEEEEechhhHHHHHHHHHHhcCCeEEEeeCCcccCCC
Q psy2047 175 VESGKLKKLDEILPDLKKNGHRVLIFSQFIFVLDILGHYMDIRGWRHLRLDGATQVSSR 233 (233)
Q Consensus 175 ~~s~Kl~~l~~lL~~~~~~~~KvlIFSq~~~~Ld~l~~~l~~~gi~~~rldG~~~~~~R 233 (233)
..+-|+..+..++..+ ..++|+|||.....+-|-|..-|...||..--|+|.-++.+|
T Consensus 447 ~d~~k~~~~~~f~~~m-s~ndKvIiFv~~K~~AD~LSSd~~l~gi~~q~lHG~r~Q~Dr 504 (629)
T KOG0336|consen 447 TDSEKLEIVQFFVANM-SSNDKVIIFVSRKVMADHLSSDFCLKGISSQSLHGNREQSDR 504 (629)
T ss_pred ccHHHHHHHHHHHHhc-CCCceEEEEEechhhhhhccchhhhcccchhhccCChhhhhH
Confidence 3366776666666554 446899999999999999999999999999999998776554
No 75
>KOG1123|consensus
Probab=78.07 E-value=4 Score=36.27 Aligned_cols=55 Identities=20% Similarity=0.378 Sum_probs=39.5
Q ss_pred hhccccHHHHHHHHhHHHhCCCeEEEEechhhHHHHHHHHHHhcCCeEEEeeCCcccCCC
Q psy2047 174 VVESGKLKKLDEILPDLKKNGHRVLIFSQFIFVLDILGHYMDIRGWRHLRLDGATQVSSR 233 (233)
Q Consensus 174 ~~~s~Kl~~l~~lL~~~~~~~~KvlIFSq~~~~Ld~l~~~l~~~gi~~~rldG~~~~~~R 233 (233)
+....|+.++.-+|+--..+|+|+||||-.+-.|.--...| |-+ -|.|.|++.+|
T Consensus 523 vMNP~KFraCqfLI~~HE~RgDKiIVFsDnvfALk~YAikl---~Kp--fIYG~Tsq~ER 577 (776)
T KOG1123|consen 523 VMNPNKFRACQFLIKFHERRGDKIIVFSDNVFALKEYAIKL---GKP--FIYGPTSQNER 577 (776)
T ss_pred ecCcchhHHHHHHHHHHHhcCCeEEEEeccHHHHHHHHHHc---CCc--eEECCCchhHH
Confidence 33478999998888766678999999999887766433333 222 27888888765
No 76
>KOG0346|consensus
Probab=77.97 E-value=3.7 Score=35.73 Aligned_cols=56 Identities=21% Similarity=0.144 Sum_probs=46.4
Q ss_pred cccHHHHHHHHhHHHhCCCeEEEEechhhHHHHHHHHHHhcCCeEEEeeCCcccCCC
Q psy2047 177 SGKLKKLDEILPDLKKNGHRVLIFSQFIFVLDILGHYMDIRGWRHLRLDGATQVSSR 233 (233)
Q Consensus 177 s~Kl~~l~~lL~~~~~~~~KvlIFSq~~~~Ld~l~~~l~~~gi~~~rldG~~~~~~R 233 (233)
--|+..+..+++--.- ..|+|||-.-+..=--|.-+|+..||+.+.+.|.+|+.-|
T Consensus 252 ~DKflllyallKL~LI-~gKsliFVNtIdr~YrLkLfLeqFGiksciLNseLP~NSR 307 (569)
T KOG0346|consen 252 EDKFLLLYALLKLRLI-RGKSLIFVNTIDRCYRLKLFLEQFGIKSCILNSELPANSR 307 (569)
T ss_pred chhHHHHHHHHHHHHh-cCceEEEEechhhhHHHHHHHHHhCcHhhhhcccccccch
Confidence 4677777777763222 3599999999999889999999999999999999998766
No 77
>KOG0345|consensus
Probab=77.88 E-value=4.4 Score=35.59 Aligned_cols=58 Identities=14% Similarity=0.292 Sum_probs=47.2
Q ss_pred hhccccHHHHHHHHhHHHhCCCeEEEEechhhHHHHHHHHHHh--cCCeEEEeeCCcccCCC
Q psy2047 174 VVESGKLKKLDEILPDLKKNGHRVLIFSQFIFVLDILGHYMDI--RGWRHLRLDGATQVSSR 233 (233)
Q Consensus 174 ~~~s~Kl~~l~~lL~~~~~~~~KvlIFSq~~~~Ld~l~~~l~~--~gi~~~rldG~~~~~~R 233 (233)
..+.-|...|+++|.. ....|+|||-..-...+|....+.. .+++.+-++|.|+.+.|
T Consensus 237 ~~a~eK~~~lv~~L~~--~~~kK~iVFF~TCasVeYf~~~~~~~l~~~~i~~iHGK~~q~~R 296 (567)
T KOG0345|consen 237 CEADEKLSQLVHLLNN--NKDKKCIVFFPTCASVEYFGKLFSRLLKKREIFSIHGKMSQKAR 296 (567)
T ss_pred ecHHHHHHHHHHHHhc--cccccEEEEecCcchHHHHHHHHHHHhCCCcEEEecchhcchhH
Confidence 3446788999998876 3356999999888888988888865 47889999999998866
No 78
>PRK12326 preprotein translocase subunit SecA; Reviewed
Probab=77.31 E-value=6.9 Score=36.49 Aligned_cols=51 Identities=16% Similarity=0.208 Sum_probs=47.1
Q ss_pred cccHHHHHHHHhHHHhCCCeEEEEechhhHHHHHHHHHHhcCCeEEEeeCC
Q psy2047 177 SGKLKKLDEILPDLKKNGHRVLIFSQFIFVLDILGHYMDIRGWRHLRLDGA 227 (233)
Q Consensus 177 s~Kl~~l~~lL~~~~~~~~KvlIFSq~~~~Ld~l~~~l~~~gi~~~rldG~ 227 (233)
..|..++++-+.++.+.|.-|||.+.++..-+.|..+|.+.||++..|...
T Consensus 410 ~~k~~Aii~ei~~~~~~GrPVLVgt~sI~~SE~ls~~L~~~gI~h~vLNAk 460 (764)
T PRK12326 410 AEKNDAIVEHIAEVHETGQPVLVGTHDVAESEELAERLRAAGVPAVVLNAK 460 (764)
T ss_pred HHHHHHHHHHHHHHHHcCCCEEEEeCCHHHHHHHHHHHHhCCCcceeeccC
Confidence 578999999888888899999999999999999999999999999998865
No 79
>TIGR01054 rgy reverse gyrase. Generally, these gyrases are encoded as a single polypeptide. An exception was found in Methanopyrus kandleri, where enzyme is split within the topoisomerase domain, yielding a heterodimer of gene products designated RgyB and RgyA.
Probab=77.29 E-value=6.5 Score=38.98 Aligned_cols=47 Identities=13% Similarity=0.255 Sum_probs=40.2
Q ss_pred HHHHHHHHhHHHhCCCeEEEEechh---hHHHHHHHHHHhcCCeEEEeeCCcc
Q psy2047 180 LKKLDEILPDLKKNGHRVLIFSQFI---FVLDILGHYMDIRGWRHLRLDGATQ 229 (233)
Q Consensus 180 l~~l~~lL~~~~~~~~KvlIFSq~~---~~Ld~l~~~l~~~gi~~~rldG~~~ 229 (233)
...+.++|+.+ +.++|||++.. ...+.|...|...|++...++|+++
T Consensus 315 ~~~L~~ll~~l---~~~~IVFv~t~~~~~~a~~l~~~L~~~g~~a~~lhg~~~ 364 (1171)
T TIGR01054 315 KETLLEIVKKL---GTGGIVYVSIDYGKEKAEEIAEFLENHGVKAVAYHATKP 364 (1171)
T ss_pred HHHHHHHHHHc---CCCEEEEEeccccHHHHHHHHHHHHhCCceEEEEeCCCC
Confidence 45666776654 57899999998 9999999999999999999999985
No 80
>PRK13767 ATP-dependent helicase; Provisional
Probab=76.99 E-value=4.5 Score=38.85 Aligned_cols=53 Identities=19% Similarity=0.053 Sum_probs=41.3
Q ss_pred HHHHHHHhHHHhCCCeEEEEechhhHHHHHHHHHHhc------CCeEEEeeCCcccCCC
Q psy2047 181 KKLDEILPDLKKNGHRVLIFSQFIFVLDILGHYMDIR------GWRHLRLDGATQVSSR 233 (233)
Q Consensus 181 ~~l~~lL~~~~~~~~KvlIFSq~~~~Ld~l~~~l~~~------gi~~~rldG~~~~~~R 233 (233)
..+...|.++...+.++|||+......+.+...|... +.....++|+++.++|
T Consensus 271 ~~l~~~L~~~i~~~~~~LVF~nTr~~ae~la~~L~~~~~~~~~~~~i~~hHg~ls~~~R 329 (876)
T PRK13767 271 EALYETLHELIKEHRTTLIFTNTRSGAERVLYNLRKRFPEEYDEDNIGAHHSSLSREVR 329 (876)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCHHHHHHHHHHHHHhchhhccccceeeeeCCCCHHHH
Confidence 3445566666666789999999999999999888762 4678889999987665
No 81
>TIGR03817 DECH_helic helicase/secretion neighborhood putative DEAH-box helicase. A conserved gene neighborhood widely spread in the Actinobacteria contains this uncharacterized DEAH-box family helicase encoded convergently towards an operon of genes for protein homologous to type II secretion and pilus formation proteins. The context suggests that this helicase may play a role in conjugal transfer of DNA.
Probab=76.81 E-value=3.1 Score=39.10 Aligned_cols=49 Identities=18% Similarity=0.168 Sum_probs=37.7
Q ss_pred HHHhHHHhCCCeEEEEechhhHHHHHHHHHHhc--------CCeEEEeeCCcccCCC
Q psy2047 185 EILPDLKKNGHRVLIFSQFIFVLDILGHYMDIR--------GWRHLRLDGATQVSSR 233 (233)
Q Consensus 185 ~lL~~~~~~~~KvlIFSq~~~~Ld~l~~~l~~~--------gi~~~rldG~~~~~~R 233 (233)
++|..+...+.++|||+..+..-+.|...|... +....-++|+++..+|
T Consensus 262 ~~l~~l~~~~~~~IVF~~sr~~ae~l~~~l~~~l~~~~~~l~~~v~~~hgg~~~~eR 318 (742)
T TIGR03817 262 DLLADLVAEGARTLTFVRSRRGAELVAAIARRLLGEVDPDLAERVAAYRAGYLPEDR 318 (742)
T ss_pred HHHHHHHHCCCCEEEEcCCHHHHHHHHHHHHHHHHhhccccccchhheecCCCHHHH
Confidence 344444445789999999999999999988653 5667788999887665
No 82
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=76.81 E-value=6.6 Score=35.17 Aligned_cols=58 Identities=19% Similarity=0.154 Sum_probs=48.5
Q ss_pred hccccHHHHHHHHhHHHhCCCeEEEEechhhHHHHHHHHHHhc-CCeEEEeeCCcccCC
Q psy2047 175 VESGKLKKLDEILPDLKKNGHRVLIFSQFIFVLDILGHYMDIR-GWRHLRLDGATQVSS 232 (233)
Q Consensus 175 ~~s~Kl~~l~~lL~~~~~~~~KvlIFSq~~~~Ld~l~~~l~~~-gi~~~rldG~~~~~~ 232 (233)
..|||-.+.+.++......|.++||.+..+....-+...|+.. |.....++|+++.++
T Consensus 6 TGsGKT~v~l~~i~~~l~~g~~vLvlvP~i~L~~Q~~~~l~~~f~~~v~vlhs~~~~~e 64 (505)
T TIGR00595 6 TGSGKTEVYLQAIEKVLALGKSVLVLVPEIALTPQMIQRFKYRFGSQVAVLHSGLSDSE 64 (505)
T ss_pred CCCCHHHHHHHHHHHHHHcCCeEEEEeCcHHHHHHHHHHHHHHhCCcEEEEECCCCHHH
Confidence 3499999999999888888889999999998887777777654 788899999987654
No 83
>PRK09401 reverse gyrase; Reviewed
Probab=76.16 E-value=5.1 Score=39.74 Aligned_cols=48 Identities=23% Similarity=0.183 Sum_probs=41.4
Q ss_pred ccHHHHHHHHhHHHhCCCeEEEEechhhH---HHHHHHHHHhcCCeEEEeeCCc
Q psy2047 178 GKLKKLDEILPDLKKNGHRVLIFSQFIFV---LDILGHYMDIRGWRHLRLDGAT 228 (233)
Q Consensus 178 ~Kl~~l~~lL~~~~~~~~KvlIFSq~~~~---Ld~l~~~l~~~gi~~~rldG~~ 228 (233)
.|...+.++++.+ +..+|||++.... .+.|...|...|++...++|++
T Consensus 315 ~k~~~L~~ll~~l---~~~~LIFv~t~~~~~~ae~l~~~L~~~gi~v~~~hg~l 365 (1176)
T PRK09401 315 DSVEKLVELVKRL---GDGGLIFVPSDKGKEYAEELAEYLEDLGINAELAISGF 365 (1176)
T ss_pred cHHHHHHHHHHhc---CCCEEEEEecccChHHHHHHHHHHHHCCCcEEEEeCcH
Confidence 5777787877654 5689999998777 9999999999999999999987
No 84
>PRK12903 secA preprotein translocase subunit SecA; Reviewed
Probab=75.40 E-value=7.5 Score=36.98 Aligned_cols=51 Identities=18% Similarity=0.154 Sum_probs=47.2
Q ss_pred cccHHHHHHHHhHHHhCCCeEEEEechhhHHHHHHHHHHhcCCeEEEeeCC
Q psy2047 177 SGKLKKLDEILPDLKKNGHRVLIFSQFIFVLDILGHYMDIRGWRHLRLDGA 227 (233)
Q Consensus 177 s~Kl~~l~~lL~~~~~~~~KvlIFSq~~~~Ld~l~~~l~~~gi~~~rldG~ 227 (233)
..|+.++++-+.++.+.|.-|||.|.++..-+.|..+|.+.||++..|+..
T Consensus 409 ~~K~~Aii~ei~~~~~~gqPVLVgT~SIe~SE~ls~~L~~~gi~h~vLNAk 459 (925)
T PRK12903 409 HAKWKAVVKEVKRVHKKGQPILIGTAQVEDSETLHELLLEANIPHTVLNAK 459 (925)
T ss_pred HHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHCCCCceeeccc
Confidence 589999999998888889999999999999999999999999999988864
No 85
>PLN03137 ATP-dependent DNA helicase; Q4-like; Provisional
Probab=74.47 E-value=5 Score=39.37 Aligned_cols=40 Identities=10% Similarity=0.107 Sum_probs=37.0
Q ss_pred CCeEEEEechhhHHHHHHHHHHhcCCeEEEeeCCcccCCC
Q psy2047 194 GHRVLIFSQFIFVLDILGHYMDIRGWRHLRLDGATQVSSR 233 (233)
Q Consensus 194 ~~KvlIFSq~~~~Ld~l~~~l~~~gi~~~rldG~~~~~~R 233 (233)
+...|||+......+.+...|...|+....++|+|+.++|
T Consensus 680 ~esgIIYC~SRke~E~LAe~L~~~Gika~~YHAGLs~eeR 719 (1195)
T PLN03137 680 DECGIIYCLSRMDCEKVAERLQEFGHKAAFYHGSMDPAQR 719 (1195)
T ss_pred CCCceeEeCchhHHHHHHHHHHHCCCCeeeeeCCCCHHHH
Confidence 4588999999999999999999999999999999988765
No 86
>cd03028 GRX_PICOT_like Glutaredoxin (GRX) family, PKC-interacting cousin of TRX (PICOT)-like subfamily; composed of PICOT and GRX-PICOT-like proteins. The non-PICOT members of this family contain only the GRX-like domain, whereas PICOT contains an N-terminal TRX-like domain followed by one to three GRX-like domains. It is interesting to note that PICOT from plants contain three repeats of the GRX-like domain, metazoan proteins (except for insect) have two repeats, while fungal sequences contain only one copy of the domain. PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli. Both GRX and TRX domains of PICOT are required for its activity. Characterized non-PICOT members of this family include CXIP1, a CAX-interacting protein
Probab=73.07 E-value=7.7 Score=25.70 Aligned_cols=32 Identities=13% Similarity=0.068 Sum_probs=24.6
Q ss_pred CCeEEEEec------hhhHHHHHHHHHHhcCCeEEEee
Q psy2047 194 GHRVLIFSQ------FIFVLDILGHYMDIRGWRHLRLD 225 (233)
Q Consensus 194 ~~KvlIFSq------~~~~Ld~l~~~l~~~gi~~~rld 225 (233)
+++|+|||. |=..=.....+|+..|++|..+|
T Consensus 7 ~~~vvvf~k~~~~~~~Cp~C~~ak~~L~~~~i~y~~id 44 (90)
T cd03028 7 ENPVVLFMKGTPEEPRCGFSRKVVQILNQLGVDFGTFD 44 (90)
T ss_pred cCCEEEEEcCCCCCCCCcHHHHHHHHHHHcCCCeEEEE
Confidence 469999987 44556677778888888888776
No 87
>TIGR00376 DNA helicase, putative. The gene product may represent a DNA helicase. Eukaryotic members of this family have been characterized as binding certain single-stranded G-rich DNA sequences (GGGGT and GGGCT). A number of related proteins are characterized as helicases.
Probab=72.68 E-value=11 Score=34.82 Aligned_cols=55 Identities=25% Similarity=0.334 Sum_probs=48.9
Q ss_pred hccccHHHHHHHHhHHHhCCCeEEEEechhhHHHHHHHHHHhcCCeEEEeeCCcc
Q psy2047 175 VESGKLKKLDEILPDLKKNGHRVLIFSQFIFVLDILGHYMDIRGWRHLRLDGATQ 229 (233)
Q Consensus 175 ~~s~Kl~~l~~lL~~~~~~~~KvlIFSq~~~~Ld~l~~~l~~~gi~~~rldG~~~ 229 (233)
..+||-..+..++..+...|.+|||.+......|-|...|...|+.++|+.+...
T Consensus 182 PGTGKT~t~~~ii~~~~~~g~~VLv~a~sn~Avd~l~e~l~~~~~~vvRlg~~~r 236 (637)
T TIGR00376 182 PGTGKTRTLVELIRQLVKRGLRVLVTAPSNIAVDNLLERLALCDQKIVRLGHPAR 236 (637)
T ss_pred CCCCHHHHHHHHHHHHHHcCCCEEEEcCcHHHHHHHHHHHHhCCCcEEEeCCchh
Confidence 3489999999999998888899999999999999999999888999999986543
No 88
>cd01520 RHOD_YbbB Member of the Rhodanese Homology Domain superfamily. This CD includes several putative ATP /GTP binding proteins including E. coli YbbB.
Probab=72.06 E-value=9.5 Score=27.03 Aligned_cols=38 Identities=16% Similarity=0.208 Sum_probs=27.5
Q ss_pred hCCCeEEEEech-hhHHHHHHHHHHhcCCeEEEeeCCcc
Q psy2047 192 KNGHRVLIFSQF-IFVLDILGHYMDIRGWRHLRLDGATQ 229 (233)
Q Consensus 192 ~~~~KvlIFSq~-~~~Ld~l~~~l~~~gi~~~rldG~~~ 229 (233)
..+.++||+|+. -..=......|+..|++...|+|+++
T Consensus 84 ~~~~~vvvyC~~~G~rs~~a~~~L~~~G~~v~~L~GG~~ 122 (128)
T cd01520 84 ERDPKLLIYCARGGMRSQSLAWLLESLGIDVPLLEGGYK 122 (128)
T ss_pred CCCCeEEEEeCCCCccHHHHHHHHHHcCCceeEeCCcHH
Confidence 346799999973 22333444777888999999999875
No 89
>KOG0348|consensus
Probab=68.21 E-value=10 Score=33.99 Aligned_cols=57 Identities=14% Similarity=0.214 Sum_probs=39.4
Q ss_pred cccHHHHHHHHhHHH--hCCCeEEEEechhhHHHHHHHHHHh----------------------cCCeEEEeeCCcccCC
Q psy2047 177 SGKLKKLDEILPDLK--KNGHRVLIFSQFIFVLDILGHYMDI----------------------RGWRHLRLDGATQVSS 232 (233)
Q Consensus 177 s~Kl~~l~~lL~~~~--~~~~KvlIFSq~~~~Ld~l~~~l~~----------------------~gi~~~rldG~~~~~~ 232 (233)
--.+..|..+|...- ....|+|||-.-..+.++--.+|.. .+.++.||+|+|++..
T Consensus 406 KLRLV~Laa~L~~~~k~~~~qk~iVF~S~~d~VeFHy~lf~~~l~~~~e~~s~~~~s~g~~~l~~~~k~~rLHGsm~Qee 485 (708)
T KOG0348|consen 406 KLRLVALAALLLNKVKFEEKQKMIVFFSCSDSVEFHYSLFSEALLSHLEGSSGAPDSEGLPPLFMDLKFYRLHGSMEQEE 485 (708)
T ss_pred chhHHHHHHHHHHHhhhhhhceeEEEEechhHHHHHHHHHHhhhhcccccccCCcccCCChhhhhcceEEEecCchhHHH
Confidence 345566667665543 2345999998888887766555532 2467999999999876
Q ss_pred C
Q psy2047 233 R 233 (233)
Q Consensus 233 R 233 (233)
|
T Consensus 486 R 486 (708)
T KOG0348|consen 486 R 486 (708)
T ss_pred H
Confidence 5
No 90
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=67.77 E-value=14 Score=34.60 Aligned_cols=59 Identities=22% Similarity=0.220 Sum_probs=49.9
Q ss_pred hccccHHHHHHHHhHHHhCCCeEEEEechhhHHHHHHHHHHhc-CCeEEEeeCCcccCCC
Q psy2047 175 VESGKLKKLDEILPDLKKNGHRVLIFSQFIFVLDILGHYMDIR-GWRHLRLDGATQVSSR 233 (233)
Q Consensus 175 ~~s~Kl~~l~~lL~~~~~~~~KvlIFSq~~~~Ld~l~~~l~~~-gi~~~rldG~~~~~~R 233 (233)
..|+|.++.++++.+....|.-+||--.-+..+.-+...++.. |-+...++.+.+..+|
T Consensus 226 TGSGKTEvYl~~i~~~L~~GkqvLvLVPEI~Ltpq~~~rf~~rFg~~v~vlHS~Ls~~er 285 (730)
T COG1198 226 TGSGKTEVYLEAIAKVLAQGKQVLVLVPEIALTPQLLARFKARFGAKVAVLHSGLSPGER 285 (730)
T ss_pred CCCcHHHHHHHHHHHHHHcCCEEEEEeccccchHHHHHHHHHHhCCChhhhcccCChHHH
Confidence 4499999999999999999999999999998888877777654 7788888888776654
No 91
>cd01524 RHOD_Pyr_redox Member of the Rhodanese Homology Domain superfamily. Included in this CD are the Lactococcus lactis NADH oxidase, Bacillus cereus NADH dehydrogenase, and Bacteroides thetaiotaomicron pyridine nucleotide-disulphide oxidoreductase, and similar rhodanese-like domains found C-terminal of the pyridine nucleotide-disulphide oxidoreductase (Pyr-redox) domain and the Pyr-redox dimerization domain.
Probab=67.74 E-value=10 Score=24.76 Aligned_cols=37 Identities=14% Similarity=0.301 Sum_probs=29.0
Q ss_pred CCCeEEEEechhhHHHHHHHHHHhcCCeEEEeeCCcc
Q psy2047 193 NGHRVLIFSQFIFVLDILGHYMDIRGWRHLRLDGATQ 229 (233)
Q Consensus 193 ~~~KvlIFSq~~~~Ld~l~~~l~~~gi~~~rldG~~~ 229 (233)
.+.++|++|..-..-......|+..|+++..++|+++
T Consensus 50 ~~~~vvl~c~~g~~a~~~a~~L~~~G~~v~~l~GG~~ 86 (90)
T cd01524 50 KDKEIIVYCAVGLRGYIAARILTQNGFKVKNLDGGYK 86 (90)
T ss_pred CCCcEEEEcCCChhHHHHHHHHHHCCCCEEEecCCHH
Confidence 3568999988755566667788899998888999975
No 92
>TIGR00365 monothiol glutaredoxin, Grx4 family. The gene for the member of this glutaredoxin family in E. coli, originally designated ydhD, is now designated grxD. Its protein, Grx4, is a monothiol glutaredoxin similar to Grx5 of yeast, which is involved in iron-sulfur cluster formation.
Probab=67.60 E-value=17 Score=24.43 Aligned_cols=38 Identities=8% Similarity=0.036 Sum_probs=26.2
Q ss_pred HhHHHhCCCeEEEEec------hhhHHHHHHHHHHhcCCeEEEee
Q psy2047 187 LPDLKKNGHRVLIFSQ------FIFVLDILGHYMDIRGWRHLRLD 225 (233)
Q Consensus 187 L~~~~~~~~KvlIFSq------~~~~Ld~l~~~l~~~gi~~~rld 225 (233)
++++.. .+||+||+. +=..=.....+|...|++|..+|
T Consensus 5 v~~~i~-~~~Vvvf~kg~~~~~~Cp~C~~ak~lL~~~~i~~~~~d 48 (97)
T TIGR00365 5 IKEQIK-ENPVVLYMKGTPQFPQCGFSARAVQILKACGVPFAYVN 48 (97)
T ss_pred HHHHhc-cCCEEEEEccCCCCCCCchHHHHHHHHHHcCCCEEEEE
Confidence 444333 379999975 33455667778888899888776
No 93
>COG1711 DNA replication initiation complex subunit, GINS family [Replication, recombination, and repair]
Probab=67.35 E-value=18 Score=28.38 Aligned_cols=54 Identities=22% Similarity=0.335 Sum_probs=41.4
Q ss_pred hhhHHHHHHHHHhhhhhhhhcchhhhhh---cCCCceEEEEEeeCCHHHHHHHHHHHHHHh
Q psy2047 20 TFEVEQVDQAKRIISPFMLRRLKKDVLT---ELPKKTALVIKVPMIPSQAEKYRGLMEDFK 77 (233)
Q Consensus 20 ~~~~~~~~~L~~~l~~~~lRRtk~~~~~---~LP~k~e~~v~v~ls~~q~~lY~~~~~~~~ 77 (233)
..-....+.+......++.||+..-+.. ++|.-+ .-.|++.|+++|..+.+...
T Consensus 53 ~~~~~~~et~~~~~r~ifqrR~~Kiv~~A~~~~~~~~----~~~Lt~eEk~ly~~l~~~I~ 109 (223)
T COG1711 53 YLLTDRIETAKSDARSIFQRRYGKIVSRAIYDVPGET----ISNLTPEEKELYEDLVNFIE 109 (223)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc----hhcCCHHHHHHHHHHHHHHh
Confidence 3334467788889999999998876532 466655 67899999999999988755
No 94
>PRK10689 transcription-repair coupling factor; Provisional
Probab=65.40 E-value=14 Score=36.73 Aligned_cols=48 Identities=13% Similarity=0.032 Sum_probs=39.1
Q ss_pred HHHhHHHhCCCeEEEEechhhHHHHHHHHHHhc--CCeEEEeeCCcccCCC
Q psy2047 185 EILPDLKKNGHRVLIFSQFIFVLDILGHYMDIR--GWRHLRLDGATQVSSR 233 (233)
Q Consensus 185 ~lL~~~~~~~~KvlIFSq~~~~Ld~l~~~l~~~--gi~~~rldG~~~~~~R 233 (233)
.++.++. .+.+++||+.-+...+.+...|.+. ++++..++|+|+.++|
T Consensus 801 ~il~el~-r~gqv~vf~n~i~~ie~la~~L~~~~p~~~v~~lHG~m~q~eR 850 (1147)
T PRK10689 801 AILREIL-RGGQVYYLYNDVENIQKAAERLAELVPEARIAIGHGQMREREL 850 (1147)
T ss_pred HHHHHHh-cCCeEEEEECCHHHHHHHHHHHHHhCCCCcEEEEeCCCCHHHH
Confidence 4445543 4679999999999999999999887 7899999999998764
No 95
>COG1202 Superfamily II helicase, archaea-specific [General function prediction only]
Probab=64.91 E-value=9.7 Score=34.58 Aligned_cols=58 Identities=14% Similarity=0.197 Sum_probs=48.7
Q ss_pred ccccHHHHHHHHhH-HHhC---C--CeEEEEechhhHHHHHHHHHHhcCCeEEEeeCCcccCCC
Q psy2047 176 ESGKLKKLDEILPD-LKKN---G--HRVLIFSQFIFVLDILGHYMDIRGWRHLRLDGATQVSSR 233 (233)
Q Consensus 176 ~s~Kl~~l~~lL~~-~~~~---~--~KvlIFSq~~~~Ld~l~~~l~~~gi~~~rldG~~~~~~R 233 (233)
.+.|.....++.+. +... | -..|||+.+..--+.|..+|..+|++...+++++|..+|
T Consensus 416 e~eK~~ii~~L~k~E~~~~sskg~rGQtIVFT~SRrr~h~lA~~L~~kG~~a~pYHaGL~y~eR 479 (830)
T COG1202 416 ESEKWDIIARLVKREFSTESSKGYRGQTIVFTYSRRRCHELADALTGKGLKAAPYHAGLPYKER 479 (830)
T ss_pred chHHHHHHHHHHHHHHhhhhccCcCCceEEEecchhhHHHHHHHhhcCCcccccccCCCcHHHH
Confidence 37899998888864 3322 3 378999999999999999999999999999999998765
No 96
>PF13245 AAA_19: Part of AAA domain
Probab=64.61 E-value=21 Score=22.81 Aligned_cols=39 Identities=26% Similarity=0.355 Sum_probs=34.9
Q ss_pred ccccHHHHHHHHhHHHhC----CCeEEEEechhhHHHHHHHHH
Q psy2047 176 ESGKLKKLDEILPDLKKN----GHRVLIFSQFIFVLDILGHYM 214 (233)
Q Consensus 176 ~s~Kl~~l~~lL~~~~~~----~~KvlIFSq~~~~Ld~l~~~l 214 (233)
.|+|-..+...+..+... +.+++|.+......+-|...+
T Consensus 20 GtGKT~~~~~~i~~l~~~~~~~~~~vlv~a~t~~aa~~l~~rl 62 (76)
T PF13245_consen 20 GTGKTTTLAARIAELLAARADPGKRVLVLAPTRAAADELRERL 62 (76)
T ss_pred CCCHHHHHHHHHHHHHHHhcCCCCeEEEECCCHHHHHHHHHHH
Confidence 499999999999988765 789999999999999998888
No 97
>TIGR01970 DEAH_box_HrpB ATP-dependent helicase HrpB. This model represents HrpB, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria, but also in a few species of other lineages. The member from Rhizobium meliloti has been designated HelO. HrpB is typically about 800 residues in length, while its paralog HrpA (TIGR01967), also uncharacterized, is about 1300 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=64.36 E-value=14 Score=35.20 Aligned_cols=40 Identities=10% Similarity=0.027 Sum_probs=34.8
Q ss_pred CCeEEEEechhhHHHHHHHHHHh---cCCeEEEeeCCcccCCC
Q psy2047 194 GHRVLIFSQFIFVLDILGHYMDI---RGWRHLRLDGATQVSSR 233 (233)
Q Consensus 194 ~~KvlIFSq~~~~Ld~l~~~l~~---~gi~~~rldG~~~~~~R 233 (233)
+.++|||..-...++.+...|.+ .++..+.++|+++.++|
T Consensus 209 ~g~iLVFlpg~~eI~~l~~~L~~~~~~~~~v~pLHg~L~~~eq 251 (819)
T TIGR01970 209 TGSILVFLPGQAEIRRVQEQLAERLDSDVLICPLYGELSLAAQ 251 (819)
T ss_pred CCcEEEEECCHHHHHHHHHHHHhhcCCCcEEEEecCCCCHHHH
Confidence 56899999999999999999987 48999999999987643
No 98
>PRK05580 primosome assembly protein PriA; Validated
Probab=64.14 E-value=17 Score=33.97 Aligned_cols=58 Identities=16% Similarity=0.142 Sum_probs=48.0
Q ss_pred hccccHHHHHHHHhHHHhCCCeEEEEechhhHHHHHHHHHHhc-CCeEEEeeCCcccCC
Q psy2047 175 VESGKLKKLDEILPDLKKNGHRVLIFSQFIFVLDILGHYMDIR-GWRHLRLDGATQVSS 232 (233)
Q Consensus 175 ~~s~Kl~~l~~lL~~~~~~~~KvlIFSq~~~~Ld~l~~~l~~~-gi~~~rldG~~~~~~ 232 (233)
..|||-.+.+..+......|.++||.+.-+....-+...|++. |.....++|+++.++
T Consensus 171 TGSGKT~v~l~~i~~~l~~g~~vLvLvPt~~L~~Q~~~~l~~~fg~~v~~~~s~~s~~~ 229 (679)
T PRK05580 171 TGSGKTEVYLQAIAEVLAQGKQALVLVPEIALTPQMLARFRARFGAPVAVLHSGLSDGE 229 (679)
T ss_pred CCChHHHHHHHHHHHHHHcCCeEEEEeCcHHHHHHHHHHHHHHhCCCEEEEECCCCHHH
Confidence 3489999998888887777889999999998888777777654 888999999987643
No 99
>PRK09694 helicase Cas3; Provisional
Probab=62.37 E-value=19 Score=34.60 Aligned_cols=51 Identities=10% Similarity=0.016 Sum_probs=39.3
Q ss_pred HHHHHhHHHhCCCeEEEEechhhHHHHHHHHHHhcC---CeEEEeeCCcccCCC
Q psy2047 183 LDEILPDLKKNGHRVLIFSQFIFVLDILGHYMDIRG---WRHLRLDGATQVSSR 233 (233)
Q Consensus 183 l~~lL~~~~~~~~KvlIFSq~~~~Ld~l~~~l~~~g---i~~~rldG~~~~~~R 233 (233)
+++.+.+....|.+++||+..+....-+...|++.+ ++...++|+++..+|
T Consensus 549 ~l~~i~~~~~~g~~vLVf~NTV~~Aq~ly~~L~~~~~~~~~v~llHsrf~~~dR 602 (878)
T PRK09694 549 LLQRMIAAANAGAQVCLICNLVDDAQKLYQRLKELNNTQVDIDLFHARFTLNDR 602 (878)
T ss_pred HHHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHhhCCCCceEEEEeCCCCHHHH
Confidence 334443334567899999999999999999998765 678999999876554
No 100
>PF02399 Herpes_ori_bp: Origin of replication binding protein; InterPro: IPR003450 This entry represents replication origin binding protein. It functions as a docking protein to recruit essential components of the viral replication machinery to viral DNA origins. In the presence of the major DNA-binding protein, it opens dsDNA which leads to a conformational change in the origin that facilitates DNA unwinding and subsequent replication [].; GO: 0003688 DNA replication origin binding, 0005524 ATP binding, 0006260 DNA replication
Probab=61.77 E-value=29 Score=32.88 Aligned_cols=52 Identities=13% Similarity=0.188 Sum_probs=41.4
Q ss_pred ccHHHHHHHHhHHHhCCCeEEEEechhhHHHHHHHHHHhcCCeEEEeeCCccc
Q psy2047 178 GKLKKLDEILPDLKKNGHRVLIFSQFIFVLDILGHYMDIRGWRHLRLDGATQV 230 (233)
Q Consensus 178 ~Kl~~l~~lL~~~~~~~~KvlIFSq~~~~Ld~l~~~l~~~gi~~~rldG~~~~ 230 (233)
....+. ..|..-...|+++-|||...++.++++.++...+..++.++|..+.
T Consensus 267 ~~~tF~-~~L~~~L~~gknIcvfsSt~~~~~~v~~~~~~~~~~Vl~l~s~~~~ 318 (824)
T PF02399_consen 267 DETTFF-SELLARLNAGKNICVFSSTVSFAEIVARFCARFTKKVLVLNSTDKL 318 (824)
T ss_pred chhhHH-HHHHHHHhCCCcEEEEeChHHHHHHHHHHHHhcCCeEEEEcCCCCc
Confidence 334444 4444445778999999999999999999999999999999887654
No 101
>TIGR03191 benz_CoA_bzdO benzoyl-CoA reductase, bzd-type, O subunit. Members of this family are the O subunit of one of two related types of four-subunit ATP-dependent benzoyl-CoA reductase. This enzyme system catalyzes the dearomatization of benzoyl-CoA, a common intermediate in pathways for the degradation for a number of different aromatic compounds, such as phenol and toluene.
Probab=61.65 E-value=21 Score=31.35 Aligned_cols=52 Identities=12% Similarity=0.022 Sum_probs=37.5
Q ss_pred cccHHHHHHHHhHHHhCCCeEEEEechh-----hHHHHHHHHHHhcCCeEEEeeCCccc
Q psy2047 177 SGKLKKLDEILPDLKKNGHRVLIFSQFI-----FVLDILGHYMDIRGWRHLRLDGATQV 230 (233)
Q Consensus 177 s~Kl~~l~~lL~~~~~~~~KvlIFSq~~-----~~Ld~l~~~l~~~gi~~~rldG~~~~ 230 (233)
..++..+.+++++....| ||.|+.+- .-.-.+...+++.||+|+.|+|+.+.
T Consensus 347 ~~R~~~l~~li~e~~vDG--VI~~~~~~C~~~s~e~~~ik~~l~~~GIP~L~ietD~~d 403 (430)
T TIGR03191 347 RIKSEMMLNIARDWNVDG--CMLHLNRGCEGLSIGIMENRLAIAKAGIPIMTFEGNMGD 403 (430)
T ss_pred hHHHHHHHHHHHHHCCCE--EEEcCCCCCccchHhHHHHHHHHHHcCCCEEEEECCCCC
Confidence 358888888888876554 56555431 12225678888899999999999765
No 102
>KOG0327|consensus
Probab=61.43 E-value=16 Score=31.30 Aligned_cols=51 Identities=20% Similarity=0.279 Sum_probs=45.8
Q ss_pred cHHHHHHHHhHHHhCCCeEEEEechhhHHHHHHHHHHhcCCeEEEeeCCcccCCC
Q psy2047 179 KLKKLDEILPDLKKNGHRVLIFSQFIFVLDILGHYMDIRGWRHLRLDGATQVSSR 233 (233)
Q Consensus 179 Kl~~l~~lL~~~~~~~~KvlIFSq~~~~Ld~l~~~l~~~gi~~~rldG~~~~~~R 233 (233)
|+..|.++.+. -...+||+.-..-++.|-..|...|+...-++|.|...+|
T Consensus 252 k~~~l~dl~~~----~~q~~if~nt~r~v~~l~~~L~~~~~~~s~~~~d~~q~~R 302 (397)
T KOG0327|consen 252 KLDTLCDLYRR----VTQAVIFCNTRRKVDNLTDKLRAHGFTVSAIHGDMEQNER 302 (397)
T ss_pred cccHHHHHHHh----hhcceEEecchhhHHHHHHHHhhCCceEEEeecccchhhh
Confidence 88888888873 3578999999999999999999999999999999998876
No 103
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=61.27 E-value=21 Score=33.31 Aligned_cols=57 Identities=11% Similarity=0.096 Sum_probs=38.1
Q ss_pred cccHHHHHHHHhHHHhCCCeEEEEechhh--------HHHHHHHHHHhc--CCeEEEeeCCcccCCC
Q psy2047 177 SGKLKKLDEILPDLKKNGHRVLIFSQFIF--------VLDILGHYMDIR--GWRHLRLDGATQVSSR 233 (233)
Q Consensus 177 s~Kl~~l~~lL~~~~~~~~KvlIFSq~~~--------~Ld~l~~~l~~~--gi~~~rldG~~~~~~R 233 (233)
..+...+.+.+.+....+.+++||+..+. ....+...|... +++...++|+|+..+|
T Consensus 454 ~~~~~~~~~~i~~~~~~g~q~~v~~~~ie~s~~l~~~~~~~~~~~L~~~~~~~~v~~lHG~m~~~eR 520 (681)
T PRK10917 454 DSRRDEVYERIREEIAKGRQAYVVCPLIEESEKLDLQSAEETYEELQEAFPELRVGLLHGRMKPAEK 520 (681)
T ss_pred cccHHHHHHHHHHHHHcCCcEEEEEcccccccchhHHHHHHHHHHHHHHCCCCcEEEEeCCCCHHHH
Confidence 44555666777666678899999987432 123334444443 5789999999987654
No 104
>PHA02653 RNA helicase NPH-II; Provisional
Probab=61.09 E-value=22 Score=33.13 Aligned_cols=39 Identities=13% Similarity=0.235 Sum_probs=34.5
Q ss_pred CCCeEEEEechhhHHHHHHHHHHhc--CCeEEEeeCCcccC
Q psy2047 193 NGHRVLIFSQFIFVLDILGHYMDIR--GWRHLRLDGATQVS 231 (233)
Q Consensus 193 ~~~KvlIFSq~~~~Ld~l~~~l~~~--gi~~~rldG~~~~~ 231 (233)
.+.++|||..-+...+.+...|... |+....|+|+++..
T Consensus 394 ~~g~iLVFlpg~~ei~~l~~~L~~~~~~~~v~~LHG~Lsq~ 434 (675)
T PHA02653 394 KGSSGIVFVASVSQCEEYKKYLEKRLPIYDFYIIHGKVPNI 434 (675)
T ss_pred cCCcEEEEECcHHHHHHHHHHHHhhcCCceEEeccCCcCHH
Confidence 3568999999999999999999887 79999999998863
No 105
>PRK12902 secA preprotein translocase subunit SecA; Reviewed
Probab=60.78 E-value=20 Score=34.42 Aligned_cols=51 Identities=18% Similarity=0.266 Sum_probs=47.5
Q ss_pred cccHHHHHHHHhHHHhCCCeEEEEechhhHHHHHHHHHHhcCCeEEEeeCC
Q psy2047 177 SGKLKKLDEILPDLKKNGHRVLIFSQFIFVLDILGHYMDIRGWRHLRLDGA 227 (233)
Q Consensus 177 s~Kl~~l~~lL~~~~~~~~KvlIFSq~~~~Ld~l~~~l~~~gi~~~rldG~ 227 (233)
..|..++++-+.++.+.|.-|||-+.++..=+.|...|.+.||++-.|+-.
T Consensus 422 ~~K~~Ai~~ei~~~~~~GrPVLIgT~SVe~SE~ls~~L~~~gi~h~vLNAk 472 (939)
T PRK12902 422 IAKWRAVANETAEMHKQGRPVLVGTTSVEKSELLSALLQEQGIPHNLLNAK 472 (939)
T ss_pred HHHHHHHHHHHHHHHhCCCCEEEeeCCHHHHHHHHHHHHHcCCchheeeCC
Confidence 689999999999888899999999999999999999999999999888875
No 106
>PRK10824 glutaredoxin-4; Provisional
Probab=60.67 E-value=23 Score=24.86 Aligned_cols=40 Identities=13% Similarity=0.068 Sum_probs=25.9
Q ss_pred HHHhHHHhCCCeEEEEec------hhhHHHHHHHHHHhcCCeEEEee
Q psy2047 185 EILPDLKKNGHRVLIFSQ------FIFVLDILGHYMDIRGWRHLRLD 225 (233)
Q Consensus 185 ~lL~~~~~~~~KvlIFSq------~~~~Ld~l~~~l~~~gi~~~rld 225 (233)
+.+.++... ++|+||+. |=.+=......|...|+.|..++
T Consensus 6 ~~v~~~I~~-~~Vvvf~Kg~~~~p~Cpyc~~ak~lL~~~~i~~~~id 51 (115)
T PRK10824 6 EKIQRQIAE-NPILLYMKGSPKLPSCGFSAQAVQALSACGERFAYVD 51 (115)
T ss_pred HHHHHHHhc-CCEEEEECCCCCCCCCchHHHHHHHHHHcCCCceEEE
Confidence 344444433 79999998 34466666677777787765543
No 107
>cd01523 RHOD_Lact_B Member of the Rhodanese Homology Domain superfamily. This CD includes predicted proteins with rhodanese-like domains found N-terminal of the metallo-beta-lactamase domain.
Probab=60.39 E-value=15 Score=24.47 Aligned_cols=38 Identities=13% Similarity=0.170 Sum_probs=30.3
Q ss_pred CCCeEEEEechhhHHHHHHHHHHhcCCeEEEeeCCccc
Q psy2047 193 NGHRVLIFSQFIFVLDILGHYMDIRGWRHLRLDGATQV 230 (233)
Q Consensus 193 ~~~KvlIFSq~~~~Ld~l~~~l~~~gi~~~rldG~~~~ 230 (233)
.+.++||+|..-..-......|...|+....+.|++..
T Consensus 60 ~~~~ivv~C~~G~rs~~aa~~L~~~G~~~~~l~GG~~~ 97 (100)
T cd01523 60 DDQEVTVICAKEGSSQFVAELLAERGYDVDYLAGGMKA 97 (100)
T ss_pred CCCeEEEEcCCCCcHHHHHHHHHHcCceeEEeCCcHHh
Confidence 45689999987666667778889999998889998753
No 108
>PRK11664 ATP-dependent RNA helicase HrpB; Provisional
Probab=60.00 E-value=17 Score=34.62 Aligned_cols=40 Identities=13% Similarity=0.071 Sum_probs=35.1
Q ss_pred CCCeEEEEechhhHHHHHHHHHHh---cCCeEEEeeCCcccCC
Q psy2047 193 NGHRVLIFSQFIFVLDILGHYMDI---RGWRHLRLDGATQVSS 232 (233)
Q Consensus 193 ~~~KvlIFSq~~~~Ld~l~~~l~~---~gi~~~rldG~~~~~~ 232 (233)
.+..+|||..-...++.+...|.. .++..+.++|+++.++
T Consensus 211 ~~g~iLVFlpg~~ei~~l~~~L~~~~~~~~~v~~Lhg~l~~~e 253 (812)
T PRK11664 211 ESGSLLLFLPGVGEIQRVQEQLASRVASDVLLCPLYGALSLAE 253 (812)
T ss_pred CCCCEEEEcCCHHHHHHHHHHHHHhccCCceEEEeeCCCCHHH
Confidence 356899999999999999999987 5889999999998754
No 109
>cd01534 4RHOD_Repeat_3 Member of the Rhodanese Homology Domain superfamily, repeat 3. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 3rd repeat which does not contain the putative catalytic Cys residue.
Probab=59.52 E-value=18 Score=23.94 Aligned_cols=36 Identities=19% Similarity=0.408 Sum_probs=27.0
Q ss_pred CCeEEEEechhhHHHHHHHHHHhcCCeEEEeeCCcc
Q psy2047 194 GHRVLIFSQFIFVLDILGHYMDIRGWRHLRLDGATQ 229 (233)
Q Consensus 194 ~~KvlIFSq~~~~Ld~l~~~l~~~gi~~~rldG~~~ 229 (233)
+.++|++|+.-..-......|...|++...++|++.
T Consensus 56 ~~~iv~~c~~G~rs~~aa~~L~~~G~~v~~l~GG~~ 91 (95)
T cd01534 56 GARIVLADDDGVRADMTASWLAQMGWEVYVLEGGLA 91 (95)
T ss_pred CCeEEEECCCCChHHHHHHHHHHcCCEEEEecCcHH
Confidence 568999998754444556677889999666899874
No 110
>PRK13103 secA preprotein translocase subunit SecA; Reviewed
Probab=59.16 E-value=15 Score=35.28 Aligned_cols=51 Identities=16% Similarity=0.160 Sum_probs=46.3
Q ss_pred cccHHHHHHHHhHHHhCCCeEEEEechhhHHHHHHHHHHhcCCeEEEeeCC
Q psy2047 177 SGKLKKLDEILPDLKKNGHRVLIFSQFIFVLDILGHYMDIRGWRHLRLDGA 227 (233)
Q Consensus 177 s~Kl~~l~~lL~~~~~~~~KvlIFSq~~~~Ld~l~~~l~~~gi~~~rldG~ 227 (233)
..|..++++-+.++.+.|.-|||-+.++..-+.|..+|++.||++-.|.-.
T Consensus 432 ~eK~~Ai~~ei~~~~~~GrPVLVGT~SVe~SE~ls~~L~~~gi~h~VLNAk 482 (913)
T PRK13103 432 EEKYAAIITDIKECMALGRPVLVGTATIETSEHMSNLLKKEGIEHKVLNAK 482 (913)
T ss_pred HHHHHHHHHHHHHHHhCCCCEEEEeCCHHHHHHHHHHHHHcCCcHHHhccc
Confidence 689999999999998999999999999999999999999999998766543
No 111
>PF09413 DUF2007: Domain of unknown function (DUF2007); InterPro: IPR018551 This is a family of proteins with unknown function. ; PDB: 2HFV_A.
Probab=59.11 E-value=21 Score=21.91 Aligned_cols=33 Identities=6% Similarity=0.032 Sum_probs=20.1
Q ss_pred eEEEEechhhHHHHHHHHHHhcCCeEEEeeCCc
Q psy2047 196 RVLIFSQFIFVLDILGHYMDIRGWRHLRLDGAT 228 (233)
Q Consensus 196 KvlIFSq~~~~Ld~l~~~l~~~gi~~~rldG~~ 228 (233)
|-|..+.......+|...|+.+||++...+-.+
T Consensus 1 ~~l~~~~~~~ea~~i~~~L~~~gI~~~v~~~~~ 33 (67)
T PF09413_consen 1 KKLYTAGDPIEAELIKGLLEENGIPAFVKNEHM 33 (67)
T ss_dssp EEEEEE--HHHHHHHHHHHHHTT--EE--S---
T ss_pred CEEEEcCCHHHHHHHHHHHHhCCCcEEEECCcc
Confidence 346777778889999999999999988766443
No 112
>CHL00122 secA preprotein translocase subunit SecA; Validated
Probab=59.10 E-value=26 Score=33.52 Aligned_cols=51 Identities=16% Similarity=0.209 Sum_probs=46.8
Q ss_pred cccHHHHHHHHhHHHhCCCeEEEEechhhHHHHHHHHHHhcCCeEEEeeCC
Q psy2047 177 SGKLKKLDEILPDLKKNGHRVLIFSQFIFVLDILGHYMDIRGWRHLRLDGA 227 (233)
Q Consensus 177 s~Kl~~l~~lL~~~~~~~~KvlIFSq~~~~Ld~l~~~l~~~gi~~~rldG~ 227 (233)
..|..++++-+.+....|.-|||-+.++..=+.|..+|...||++-.|...
T Consensus 407 ~~K~~AI~~ei~~~~~~grPVLIgT~SIe~SE~ls~~L~~~gi~h~vLNAk 457 (870)
T CHL00122 407 LSKWRAIADECLQMHQTGRPILIGTTTIEKSELLSQLLKEYRLPHQLLNAK 457 (870)
T ss_pred HHHHHHHHHHHHHHHhcCCCEEEeeCCHHHHHHHHHHHHHcCCccceeeCC
Confidence 468898888888888889999999999999999999999999999998875
No 113
>PRK11131 ATP-dependent RNA helicase HrpA; Provisional
Probab=58.11 E-value=17 Score=36.47 Aligned_cols=54 Identities=17% Similarity=0.122 Sum_probs=39.6
Q ss_pred HHHHHHHHhHHHh-CCCeEEEEechhhHHHHHHHHHHhcCCe---EEEeeCCcccCCC
Q psy2047 180 LKKLDEILPDLKK-NGHRVLIFSQFIFVLDILGHYMDIRGWR---HLRLDGATQVSSR 233 (233)
Q Consensus 180 l~~l~~lL~~~~~-~~~KvlIFSq~~~~Ld~l~~~l~~~gi~---~~rldG~~~~~~R 233 (233)
+..+++.+..+.. .+.++|||..-...++.+...|...|++ ++.++|+++.++|
T Consensus 271 l~~ll~~V~~l~~~~~GdILVFLpg~~EIe~lae~L~~~~~~~~~VlpLhg~Ls~~eQ 328 (1294)
T PRK11131 271 LQAIFDAVDELGREGPGDILIFMSGEREIRDTADALNKLNLRHTEILPLYARLSNSEQ 328 (1294)
T ss_pred HHHHHHHHHHHhcCCCCCEEEEcCCHHHHHHHHHHHHhcCCCcceEeecccCCCHHHH
Confidence 3344444444332 3468999999999999999999988775 5678999987543
No 114
>PRK06646 DNA polymerase III subunit chi; Provisional
Probab=57.95 E-value=29 Score=25.77 Aligned_cols=42 Identities=10% Similarity=0.014 Sum_probs=38.5
Q ss_pred hccccHHHHHHHHhHHHhCCCeEEEEechhhHHHHHHHHHHh
Q psy2047 175 VESGKLKKLDEILPDLKKNGHRVLIFSQFIFVLDILGHYMDI 216 (233)
Q Consensus 175 ~~s~Kl~~l~~lL~~~~~~~~KvlIFSq~~~~Ld~l~~~l~~ 216 (233)
..+.+..++-+++++....|.|++|.+.--..+..|-..|-.
T Consensus 10 ~~~~~~~~acrL~~Ka~~~G~rv~I~~~d~~~~~~LD~~LWt 51 (154)
T PRK06646 10 SDELLLKSILLLIEKCYYSDLKSVILTADADQQEMLNKNLWT 51 (154)
T ss_pred CCChHHHHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHHhcC
Confidence 458899999999999999999999999999999999999954
No 115
>smart00450 RHOD Rhodanese Homology Domain. An alpha beta fold found duplicated in the Rhodanese protein. The the Cysteine containing enzymatically active version of the domain is also found in the CDC25 class of protein phosphatases and a variety of proteins such as sulfide dehydrogenases and stress proteins such as Senesence specific protein 1 in plants, PspE and GlpE in bacteria and cyanide and arsenate resistance proteins. Inactive versions with a loss of the cysteine are also seen in Dual specificity phosphatases, ubiquitin hydrolases from yeast and in sulfuryltransferases. These are likely to play a role in protein interactions.
Probab=57.23 E-value=20 Score=23.19 Aligned_cols=37 Identities=14% Similarity=0.172 Sum_probs=30.1
Q ss_pred CCCeEEEEechhhHHHHHHHHHHhcCCe-EEEeeCCcc
Q psy2047 193 NGHRVLIFSQFIFVLDILGHYMDIRGWR-HLRLDGATQ 229 (233)
Q Consensus 193 ~~~KvlIFSq~~~~Ld~l~~~l~~~gi~-~~rldG~~~ 229 (233)
.+.++||++..-..-......|...|+. ...++|++.
T Consensus 55 ~~~~iv~~c~~g~~a~~~~~~l~~~G~~~v~~l~GG~~ 92 (100)
T smart00450 55 KDKPVVVYCRSGNRSAKAAWLLRELGFKNVYLLDGGYK 92 (100)
T ss_pred CCCeEEEEeCCCcHHHHHHHHHHHcCCCceEEecCCHH
Confidence 3569999997766677888889999998 778899864
No 116
>PF02492 cobW: CobW/HypB/UreG, nucleotide-binding domain; InterPro: IPR003495 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. CobW proteins are generally found proximal to the trimeric cobaltochelatase subunit CobN, which is essential for vitamin B12 (cobalamin) biosynthesis []. They contain a P-loop nucleotide-binding loop in the N-terminal domain and a histidine-rich region in the C-terminal portion suggesting a role in metal binding, possibly as an intermediary between the cobalt transport and chelation systems. CobW might be involved in cobalt reduction leading to cobalt(I) corrinoids. This entry represents CobW-like proteins, including P47K (P31521 from SWISSPROT), a Pseudomonas chlororaphis protein needed for nitrile hydratase expression [], and urease accessory protein UreG, which acts as a chaperone in the activation of urease upon insertion of nickel into the active site [].; PDB: 2WSM_B 1NIJ_A 2HF9_A 2HF8_B.
Probab=56.64 E-value=35 Score=25.67 Aligned_cols=52 Identities=19% Similarity=0.288 Sum_probs=39.7
Q ss_pred ccccHHHHHHHHhHHHhCCCeEEEEechhhHHHHHHHHHHhcCCeEEEeeCCc
Q psy2047 176 ESGKLKKLDEILPDLKKNGHRVLIFSQFIFVLDILGHYMDIRGWRHLRLDGAT 228 (233)
Q Consensus 176 ~s~Kl~~l~~lL~~~~~~~~KvlIFSq~~~~Ld~l~~~l~~~gi~~~rldG~~ 228 (233)
.|||-.++..+|+ ....+.|+.|...=....++=+..++..|+....+.|+.
T Consensus 10 GsGKTTli~~ll~-~~~~~~~~~vI~ne~g~~~iD~~~l~~~~~~v~~l~~gc 61 (178)
T PF02492_consen 10 GSGKTTLINHLLK-RNRQGERVAVIVNEFGEVNIDAELLQEDGVPVVELNNGC 61 (178)
T ss_dssp TSSHHHHHHHHHH-HHTTTS-EEEEECSTTSTHHHHHHHHTTT-EEEEECTTT
T ss_pred CCCHHHHHHHHHH-HhcCCceeEEEEccccccccchhhhcccceEEEEecCCC
Confidence 3999999999998 556678887777666666766777888899999998764
No 117
>cd01521 RHOD_PspE2 Member of the Rhodanese Homology Domain superfamily. This CD includes the putative rhodanese-like protein, Psp2, of Yersinia pestis biovar Medievalis and other similar uncharacterized proteins.
Probab=55.61 E-value=25 Score=23.98 Aligned_cols=37 Identities=5% Similarity=-0.050 Sum_probs=28.6
Q ss_pred CCCeEEEEechhh--HHHHHHHHHHhcCCeEEEeeCCcc
Q psy2047 193 NGHRVLIFSQFIF--VLDILGHYMDIRGWRHLRLDGATQ 229 (233)
Q Consensus 193 ~~~KvlIFSq~~~--~Ld~l~~~l~~~gi~~~rldG~~~ 229 (233)
.+.++||+|..-. ........|...|++...++|++.
T Consensus 63 ~~~~vvvyc~~g~~~~s~~~a~~l~~~G~~v~~l~GG~~ 101 (110)
T cd01521 63 KEKLFVVYCDGPGCNGATKAALKLAELGFPVKEMIGGLD 101 (110)
T ss_pred CCCeEEEEECCCCCchHHHHHHHHHHcCCeEEEecCCHH
Confidence 4578999998643 556677788889999788999864
No 118
>PRK12899 secA preprotein translocase subunit SecA; Reviewed
Probab=54.69 E-value=30 Score=33.44 Aligned_cols=51 Identities=16% Similarity=0.238 Sum_probs=46.7
Q ss_pred cccHHHHHHHHhHHHhCCCeEEEEechhhHHHHHHHHHHhcCCeEEEeeCC
Q psy2047 177 SGKLKKLDEILPDLKKNGHRVLIFSQFIFVLDILGHYMDIRGWRHLRLDGA 227 (233)
Q Consensus 177 s~Kl~~l~~lL~~~~~~~~KvlIFSq~~~~Ld~l~~~l~~~gi~~~rldG~ 227 (233)
..|..++++-+.++.+.|.-|||-+.++..=+.|..+|.+.||++..|+-.
T Consensus 551 ~~k~~ai~~ei~~~~~~grPvLigt~si~~se~ls~~L~~~gi~h~vLNak 601 (970)
T PRK12899 551 REKYHAIVAEIASIHRKGNPILIGTESVEVSEKLSRILRQNRIEHTVLNAK 601 (970)
T ss_pred HHHHHHHHHHHHHHHhCCCCEEEEeCcHHHHHHHHHHHHHcCCcceecccc
Confidence 589999999998888889999999999999999999999999999888754
No 119
>cd01533 4RHOD_Repeat_2 Member of the Rhodanese Homology Domain superfamily, repeat 2. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 2nd repeat which does contain the putative catalytic Cys residue.
Probab=54.14 E-value=38 Score=22.98 Aligned_cols=36 Identities=14% Similarity=-0.081 Sum_probs=26.8
Q ss_pred CCeEEEEechhhHHHHHHHHHHhcCCe--EEEeeCCcc
Q psy2047 194 GHRVLIFSQFIFVLDILGHYMDIRGWR--HLRLDGATQ 229 (233)
Q Consensus 194 ~~KvlIFSq~~~~Ld~l~~~l~~~gi~--~~rldG~~~ 229 (233)
+..+||+|+.-..-......|...|++ ...++|+++
T Consensus 66 ~~~ivv~C~~G~rs~~a~~~L~~~G~~~~v~~l~gG~~ 103 (109)
T cd01533 66 RTPIVVNCAGRTRSIIGAQSLINAGLPNPVAALRNGTQ 103 (109)
T ss_pred CCeEEEECCCCchHHHHHHHHHHCCCCcceeEecCCHH
Confidence 458999987654444456788889994 778999875
No 120
>cd01528 RHOD_2 Member of the Rhodanese Homology Domain superfamily, subgroup 2. Subgroup 2 includes uncharacterized putative rhodanese-related domains.
Probab=53.98 E-value=43 Score=22.29 Aligned_cols=37 Identities=8% Similarity=0.170 Sum_probs=28.1
Q ss_pred CCCeEEEEechhhHHHHHHHHHHhcCCe-EEEeeCCcc
Q psy2047 193 NGHRVLIFSQFIFVLDILGHYMDIRGWR-HLRLDGATQ 229 (233)
Q Consensus 193 ~~~KvlIFSq~~~~Ld~l~~~l~~~gi~-~~rldG~~~ 229 (233)
.+.++||+|+.-..-......|.+.|+. ...++|++.
T Consensus 57 ~~~~vv~~c~~g~rs~~~~~~l~~~G~~~v~~l~GG~~ 94 (101)
T cd01528 57 PDKDIVVLCHHGGRSMQVAQWLLRQGFENVYNLQGGID 94 (101)
T ss_pred CCCeEEEEeCCCchHHHHHHHHHHcCCccEEEecCCHH
Confidence 3568999998865556667777788995 678999875
No 121
>PRK05728 DNA polymerase III subunit chi; Validated
Probab=53.51 E-value=36 Score=24.78 Aligned_cols=41 Identities=20% Similarity=0.045 Sum_probs=37.1
Q ss_pred ccccHHHHHHHHhHHHhCCCeEEEEechhhHHHHHHHHHHh
Q psy2047 176 ESGKLKKLDEILPDLKKNGHRVLIFSQFIFVLDILGHYMDI 216 (233)
Q Consensus 176 ~s~Kl~~l~~lL~~~~~~~~KvlIFSq~~~~Ld~l~~~l~~ 216 (233)
.+.+...+-.++++....|.|++|.+.-....+.|-..|..
T Consensus 11 ~~~~~~~~c~L~~ka~~~g~rv~I~~~d~~~a~~lD~~LW~ 51 (142)
T PRK05728 11 LSALEALLCELAEKALRAGWRVLVQCEDEEQAEALDEALWT 51 (142)
T ss_pred chhHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHhcC
Confidence 36688999999999999999999999999999999999965
No 122
>TIGR00643 recG ATP-dependent DNA helicase RecG.
Probab=53.33 E-value=31 Score=31.86 Aligned_cols=55 Identities=11% Similarity=0.137 Sum_probs=36.6
Q ss_pred cHHHHHHHHhHHHhCCCeEEEEechh--------hHHHHHHHHHHh--cCCeEEEeeCCcccCCC
Q psy2047 179 KLKKLDEILPDLKKNGHRVLIFSQFI--------FVLDILGHYMDI--RGWRHLRLDGATQVSSR 233 (233)
Q Consensus 179 Kl~~l~~lL~~~~~~~~KvlIFSq~~--------~~Ld~l~~~l~~--~gi~~~rldG~~~~~~R 233 (233)
+...+.+.+.+....+.+++||+..+ .....+...|.. .++....++|+|+.++|
T Consensus 433 ~~~~~~~~i~~~l~~g~q~~v~~~~i~~s~~~~~~~a~~~~~~L~~~~~~~~v~~lHG~m~~~eR 497 (630)
T TIGR00643 433 EKDIVYEFIEEEIAKGRQAYVVYPLIEESEKLDLKAAEALYERLKKAFPKYNVGLLHGRMKSDEK 497 (630)
T ss_pred hHHHHHHHHHHHHHhCCcEEEEEccccccccchHHHHHHHHHHHHhhCCCCcEEEEeCCCCHHHH
Confidence 33555666665556788999998754 223334444443 47889999999987654
No 123
>PF01352 KRAB: KRAB box; InterPro: IPR001909 The Krueppel-associated box (KRAB) is a domain of around 75 amino acids that is found in the N-terminal part of about one third of eukaryotic Krueppel-type C2H2 zinc finger proteins (ZFPs) []. It is enriched in charged amino acids and can be divided into subregions A and B, which are predicted to fold into two amphipathic alpha-helices. The KRAB A and B boxes can be separated by variable spacer segments and many KRAB proteins contain only the A box []. The functions currently known for members of the KRAB-containing protein family include transcriptional repression of RNA polymerase I, II, and III promoters, binding and splicing of RNA, and control of nucleolus function. The KRAB domain functions as a transcriptional repressor when tethered to the template DNA by a DNA-binding domain. A sequence of 45 amino acids in the KRAB A subdomain has been shown to be necessary and sufficient for transcriptional repression. The B box does not repress by itself but does potentiate the repression exerted by the KRAB A subdomain [, ]. Gene silencing requires the binding of the KRAB domain to the RING-B box-coiled coil (RBCC) domain of the KAP-1/TIF1-beta corepressor. As KAP-1 binds to the heterochromatin proteins HP1, it has been proposed that the KRAB-ZFP-bound target gene could be silenced following recruitment to heterochromatin [, ]. KRAB-ZFPs probably constitute the single largest class of transcription factors within the human genome []. Although the function of KRAB-ZFPs is largely unknown, they appear to play important roles during cell differentiation and development. The KRAB domain is generally encoded by two exons. The regions coded by the two exons are known as KRAB-A and KRAB-B.; GO: 0003676 nucleic acid binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1V65_A.
Probab=52.62 E-value=17 Score=20.35 Aligned_cols=16 Identities=31% Similarity=0.524 Sum_probs=12.0
Q ss_pred eCCHHHHHHHHHHHHH
Q psy2047 60 PMIPSQAEKYRGLMED 75 (233)
Q Consensus 60 ~ls~~q~~lY~~~~~~ 75 (233)
.|.|.||.+|+.++..
T Consensus 17 ~L~~~Qk~ly~dvm~E 32 (41)
T PF01352_consen 17 LLDPAQKNLYRDVMLE 32 (41)
T ss_dssp TS-HHHHHHHHHHHHH
T ss_pred cccceecccchhHHHH
Confidence 4788999999987653
No 124
>cd00158 RHOD Rhodanese Homology Domain (RHOD); an alpha beta fold domain found duplicated in the rhodanese protein. The cysteine containing enzymatically active version of the domain is also found in the Cdc25 class of protein phosphatases and a variety of proteins such as sulfide dehydrogenases and certain stress proteins such as senesence specific protein 1 in plants, PspE and GlpE in bacteria and cyanide and arsenate resistance proteins. Inactive versions (no active site cysteine) are also seen in dual specificity phosphatases, ubiquitin hydrolases from yeast and in sulfuryltransferases, where they are believed to play a regulatory role in multidomain proteins.
Probab=52.26 E-value=34 Score=21.66 Aligned_cols=38 Identities=8% Similarity=0.095 Sum_probs=30.1
Q ss_pred hCCCeEEEEechhhHHHHHHHHHHhcCCe-EEEeeCCcc
Q psy2047 192 KNGHRVLIFSQFIFVLDILGHYMDIRGWR-HLRLDGATQ 229 (233)
Q Consensus 192 ~~~~KvlIFSq~~~~Ld~l~~~l~~~gi~-~~rldG~~~ 229 (233)
..+.++||++..-..-......|...|+. ...++|++.
T Consensus 48 ~~~~~vv~~c~~~~~a~~~~~~l~~~G~~~v~~l~gG~~ 86 (89)
T cd00158 48 DKDKPIVVYCRSGNRSARAAKLLRKAGGTNVYNLEGGML 86 (89)
T ss_pred CCCCeEEEEeCCCchHHHHHHHHHHhCcccEEEecCChh
Confidence 34679999998877778888899999765 667889875
No 125
>PTZ00062 glutaredoxin; Provisional
Probab=51.60 E-value=67 Score=25.06 Aligned_cols=43 Identities=16% Similarity=0.302 Sum_probs=30.6
Q ss_pred HHHHHHhHHHhCCCeEEEEec------hhhHHHHHHHHHHhcCCeEEEee
Q psy2047 182 KLDEILPDLKKNGHRVLIFSQ------FIFVLDILGHYMDIRGWRHLRLD 225 (233)
Q Consensus 182 ~l~~lL~~~~~~~~KvlIFSq------~~~~Ld~l~~~l~~~gi~~~rld 225 (233)
.+.+.|+++.. .++|+||+. +=..=..+..+|+..|++|..+|
T Consensus 101 ~~~~~v~~li~-~~~Vvvf~Kg~~~~p~C~~C~~~k~~L~~~~i~y~~~D 149 (204)
T PTZ00062 101 DTVEKIERLIR-NHKILLFMKGSKTFPFCRFSNAVVNMLNSSGVKYETYN 149 (204)
T ss_pred HHHHHHHHHHh-cCCEEEEEccCCCCCCChhHHHHHHHHHHcCCCEEEEE
Confidence 35566666544 379999998 34455567778888899888776
No 126
>PRK12901 secA preprotein translocase subunit SecA; Reviewed
Probab=51.43 E-value=21 Score=34.78 Aligned_cols=51 Identities=20% Similarity=0.308 Sum_probs=46.7
Q ss_pred cccHHHHHHHHhHHHhCCCeEEEEechhhHHHHHHHHHHhcCCeEEEeeCC
Q psy2047 177 SGKLKKLDEILPDLKKNGHRVLIFSQFIFVLDILGHYMDIRGWRHLRLDGA 227 (233)
Q Consensus 177 s~Kl~~l~~lL~~~~~~~~KvlIFSq~~~~Ld~l~~~l~~~gi~~~rldG~ 227 (233)
..|..++++-+.++.+.|.-|||-+.++..=++|..+|...||++-.|+-.
T Consensus 611 ~eK~~Aii~ei~~~~~~GrPVLVGT~SVe~SE~lS~~L~~~gI~H~VLNAK 661 (1112)
T PRK12901 611 REKYNAVIEEITELSEAGRPVLVGTTSVEISELLSRMLKMRKIPHNVLNAK 661 (1112)
T ss_pred HHHHHHHHHHHHHHHHCCCCEEEEeCcHHHHHHHHHHHHHcCCcHHHhhcc
Confidence 689999999999999999999999999999999999999999998777643
No 127
>cd01518 RHOD_YceA Member of the Rhodanese Homology Domain superfamily. This CD includes Escherichia coli YceA, Bacillus subtilis YbfQ, and similar uncharacterized proteins.
Probab=51.27 E-value=23 Score=23.60 Aligned_cols=37 Identities=22% Similarity=0.429 Sum_probs=26.5
Q ss_pred CCCeEEEEechhhHHHHHHHHHHhcCCe-EEEeeCCcc
Q psy2047 193 NGHRVLIFSQFIFVLDILGHYMDIRGWR-HLRLDGATQ 229 (233)
Q Consensus 193 ~~~KvlIFSq~~~~Ld~l~~~l~~~gi~-~~rldG~~~ 229 (233)
.+.++||+|+.-..-......|...|+. +..++|++.
T Consensus 60 ~~~~ivvyC~~G~rs~~a~~~L~~~G~~~v~~l~GG~~ 97 (101)
T cd01518 60 KGKKVLMYCTGGIRCEKASAYLKERGFKNVYQLKGGIL 97 (101)
T ss_pred CCCEEEEECCCchhHHHHHHHHHHhCCcceeeechhHH
Confidence 4568999997643334445678888995 778999864
No 128
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=50.97 E-value=42 Score=25.77 Aligned_cols=52 Identities=21% Similarity=0.300 Sum_probs=37.9
Q ss_pred ccccHHHHHHHHhHH--------HhCCCeEEEEechhhHHHHHHHHHHh--------cCCeEEEeeCC
Q psy2047 176 ESGKLKKLDEILPDL--------KKNGHRVLIFSQFIFVLDILGHYMDI--------RGWRHLRLDGA 227 (233)
Q Consensus 176 ~s~Kl~~l~~lL~~~--------~~~~~KvlIFSq~~~~Ld~l~~~l~~--------~gi~~~rldG~ 227 (233)
.+||-.++..++..+ ...+.++||.|+....+|-+-..|.+ ....++|+...
T Consensus 27 GTGKT~~l~~~i~~~~~~~~~~~~~~~~~il~~~~sN~avd~~~~~l~~~~~~~~~~~~~~~ir~~~~ 94 (236)
T PF13086_consen 27 GTGKTTTLASIIAQLLQRFKSRSADRGKKILVVSPSNAAVDNILERLKKLLDEDGKVYKPKIIRLGSE 94 (236)
T ss_dssp TSSHHHHHHHHHHHH-------HCCCSS-EEEEESSHHHHHHHHHHHHC--------TT--EEE---G
T ss_pred CCChHHHHHHHHHHhccchhhhhhhccccceeecCCchhHHHHHHHHHhhccccccccccchhhhccc
Confidence 389999999999988 45578999999999999988888877 34566666544
No 129
>PF11019 DUF2608: Protein of unknown function (DUF2608); InterPro: IPR022565 This family is conserved in Bacteria. The function is not known.
Probab=50.42 E-value=54 Score=26.48 Aligned_cols=50 Identities=10% Similarity=0.123 Sum_probs=43.9
Q ss_pred ccccHHHHHHHHhHHHhCCCeEEEEechhhHHHHHHHHHHhcCCeEEEee
Q psy2047 176 ESGKLKKLDEILPDLKKNGHRVLIFSQFIFVLDILGHYMDIRGWRHLRLD 225 (233)
Q Consensus 176 ~s~Kl~~l~~lL~~~~~~~~KvlIFSq~~~~Ld~l~~~l~~~gi~~~rld 225 (233)
.-.|=.+|..+|..+.....|+|.+.....-|.-++..|+..||.|.=++
T Consensus 160 ~~~KG~~L~~fL~~~~~~pk~IIfIDD~~~nl~sv~~a~k~~~I~f~G~~ 209 (252)
T PF11019_consen 160 GQDKGEVLKYFLDKINQSPKKIIFIDDNKENLKSVEKACKKSGIDFIGFH 209 (252)
T ss_pred CCccHHHHHHHHHHcCCCCCeEEEEeCCHHHHHHHHHHHhhCCCcEEEEE
Confidence 35788999999999877888999999999999999999999999876543
No 130
>TIGR01967 DEAH_box_HrpA ATP-dependent helicase HrpA. This model represents HrpA, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria and a few high-GC Gram-positive bacteria. HrpA is about 1300 amino acids long, while its paralog HrpB, also uncharacterized, is about 800 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=50.22 E-value=27 Score=35.10 Aligned_cols=54 Identities=15% Similarity=0.068 Sum_probs=41.8
Q ss_pred cHHHHHHHHhHHHhC-CCeEEEEechhhHHHHHHHHHHhcC---CeEEEeeCCcccCC
Q psy2047 179 KLKKLDEILPDLKKN-GHRVLIFSQFIFVLDILGHYMDIRG---WRHLRLDGATQVSS 232 (233)
Q Consensus 179 Kl~~l~~lL~~~~~~-~~KvlIFSq~~~~Ld~l~~~l~~~g---i~~~rldG~~~~~~ 232 (233)
++..+.+.|.++... +.++|||..-...++.+...|.+.+ +.+..++|+++.++
T Consensus 263 ~~~~i~~~I~~l~~~~~GdILVFLpg~~EI~~l~~~L~~~~~~~~~VlpLhg~Ls~~e 320 (1283)
T TIGR01967 263 QLEAILDAVDELFAEGPGDILIFLPGEREIRDAAEILRKRNLRHTEILPLYARLSNKE 320 (1283)
T ss_pred HHHHHHHHHHHHHhhCCCCEEEeCCCHHHHHHHHHHHHhcCCCCcEEEeccCCCCHHH
Confidence 555666666665433 4589999999999999999998765 45788999998754
No 131
>PRK14873 primosome assembly protein PriA; Provisional
Probab=49.71 E-value=39 Score=31.53 Aligned_cols=58 Identities=14% Similarity=0.056 Sum_probs=50.0
Q ss_pred ccccHHHHHHHHhHHHhCCCeEEEEechhhHHHHHHHHHHhc-C-CeEEEeeCCcccCCC
Q psy2047 176 ESGKLKKLDEILPDLKKNGHRVLIFSQFIFVLDILGHYMDIR-G-WRHLRLDGATQVSSR 233 (233)
Q Consensus 176 ~s~Kl~~l~~lL~~~~~~~~KvlIFSq~~~~Ld~l~~~l~~~-g-i~~~rldG~~~~~~R 233 (233)
.|+|-+..++++.+....|..+||.---+....-+...|+.. | -..+.++.+++.++|
T Consensus 170 GSGKTevyl~~i~~~l~~Gk~vLvLvPEi~lt~q~~~rl~~~f~~~~v~~lhS~l~~~~R 229 (665)
T PRK14873 170 GEDWARRLAAAAAATLRAGRGALVVVPDQRDVDRLEAALRALLGAGDVAVLSAGLGPADR 229 (665)
T ss_pred CCcHHHHHHHHHHHHHHcCCeEEEEecchhhHHHHHHHHHHHcCCCcEEEECCCCCHHHH
Confidence 489999999999999999999999999999888888888765 4 678899998887654
No 132
>KOG0347|consensus
Probab=49.38 E-value=7.2 Score=35.07 Aligned_cols=40 Identities=20% Similarity=0.173 Sum_probs=37.0
Q ss_pred CCeEEEEechhhHHHHHHHHHHhcCCeEEEeeCCcccCCC
Q psy2047 194 GHRVLIFSQFIFVLDILGHYMDIRGWRHLRLDGATQVSSR 233 (233)
Q Consensus 194 ~~KvlIFSq~~~~Ld~l~~~l~~~gi~~~rldG~~~~~~R 233 (233)
+-+.|||+..+....-|..+|..-+|+...|+..|.+++|
T Consensus 463 PGrTlVF~NsId~vKRLt~~L~~L~i~p~~LHA~M~QKqR 502 (731)
T KOG0347|consen 463 PGRTLVFCNSIDCVKRLTVLLNNLDIPPLPLHASMIQKQR 502 (731)
T ss_pred CCceEEEechHHHHHHHHHHHhhcCCCCchhhHHHHHHHH
Confidence 4589999999999999999999999999999999988766
No 133
>cd01447 Polysulfide_ST Polysulfide-sulfurtransferase - Rhodanese Homology Domain. This domain is believed to serve as a polysulfide binding and transferase domain in anaerobic gram-negative bacteria, functioning in oxidative phosphorylation with polysulfide-sulfur as a terminal electron acceptor. The active site contains the same conserved cysteine that is the catalytic residue in other Rhodanese Homology Domain proteins.
Probab=49.16 E-value=19 Score=23.90 Aligned_cols=37 Identities=8% Similarity=0.222 Sum_probs=28.4
Q ss_pred CCCeEEEEechhhHHHHHHHHHHhcCCe-EEEeeCCcc
Q psy2047 193 NGHRVLIFSQFIFVLDILGHYMDIRGWR-HLRLDGATQ 229 (233)
Q Consensus 193 ~~~KvlIFSq~~~~Ld~l~~~l~~~gi~-~~rldG~~~ 229 (233)
.+.++||+|+.-..-......|...|+. ...++|++.
T Consensus 60 ~~~~ivv~c~~g~~s~~~~~~l~~~G~~~v~~l~Gg~~ 97 (103)
T cd01447 60 EDKPFVFYCASGWRSALAGKTLQDMGLKPVYNIEGGFK 97 (103)
T ss_pred CCCeEEEEcCCCCcHHHHHHHHHHcChHHhEeecCcHH
Confidence 4568999997754556677888889987 778999864
No 134
>PF04364 DNA_pol3_chi: DNA polymerase III chi subunit, HolC; InterPro: IPR007459 The DNA polymerase III holoenzyme (2.7.7.7 from EC) is the polymerase responsible for the replication of the Escherichia coli chromosome. The holoenzyme is composed of the DNA polymerase III core, the sliding clamp, and the DnaX clamp loading complex. The DnaX complex contains either the tau or gamma product of gene dnax, complexed to delta.delta and to chi psi. Chi forms a 1:1 heterodimer with psi. The chi psi complex functions by increasing the affinity of tau and gamma for delta.delta allowing a functional clamp-loading complex to form at physiological subunit concentrations. Psi is responsible for the interaction with DnaX (gamma/tau), but psi is insoluble unless it is in a complex with chi [].; GO: 0003677 DNA binding, 0003887 DNA-directed DNA polymerase activity, 0006260 DNA replication; PDB: 3SXU_A 1EM8_C.
Probab=48.37 E-value=37 Score=24.53 Aligned_cols=38 Identities=13% Similarity=0.051 Sum_probs=31.4
Q ss_pred HHHHHHHHhHHHhCCCeEEEEechhhHHHHHHHHHHhc
Q psy2047 180 LKKLDEILPDLKKNGHRVLIFSQFIFVLDILGHYMDIR 217 (233)
Q Consensus 180 l~~l~~lL~~~~~~~~KvlIFSq~~~~Ld~l~~~l~~~ 217 (233)
..++-.++++....|.+++|++.-...++.|-..|...
T Consensus 15 ~~~~c~L~~k~~~~g~rv~V~~~d~~~a~~lD~~LW~~ 52 (137)
T PF04364_consen 15 ERFACRLAEKAYRQGQRVLVLCPDEEQAEALDELLWTF 52 (137)
T ss_dssp HHHHHHHHHHHHHTT--EEEE-SSHHHHHHHHHHTTTS
T ss_pred HHHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHHCC
Confidence 48888999999999999999999999999999999653
No 135
>TIGR03167 tRNA_sel_U_synt tRNA 2-selenouridine synthase. The Escherichia coli YbbB protein was shown to encode a selenophosphate-dependent tRNA 2-selenouridine synthase, essential for modification of some tRNAs to replace a sulfur atom with selenium. This enzyme works with SelD, the selenium donor protein, which also acts in selenocysteine incorporation. Although the members of this protein family show a fairly deep split, sequences from both sides of the split are supported by co-occurence with, and often proximity to, the selD gene.
Probab=48.29 E-value=46 Score=27.83 Aligned_cols=52 Identities=19% Similarity=0.166 Sum_probs=31.5
Q ss_pred cccHHHHHHHHhHHHhCCCeEEEEech-hhHHHHHHHHHHhcCCeEEEeeCCc
Q psy2047 177 SGKLKKLDEILPDLKKNGHRVLIFSQF-IFVLDILGHYMDIRGWRHLRLDGAT 228 (233)
Q Consensus 177 s~Kl~~l~~lL~~~~~~~~KvlIFSq~-~~~Ld~l~~~l~~~gi~~~rldG~~ 228 (233)
++|+...++-+......+.++||+|.. -.-=......|...|++...++|+.
T Consensus 57 ~~~l~~~i~~~~~~~~~~~~vvvyC~~gG~RS~~aa~~L~~~G~~v~~L~GG~ 109 (311)
T TIGR03167 57 SPNLAAHVEQWRAFADGPPQPLLYCWRGGMRSGSLAWLLAQIGFRVPRLEGGY 109 (311)
T ss_pred hHHHHHHHHHHHhhcCCCCcEEEEECCCChHHHHHHHHHHHcCCCEEEecChH
Confidence 344544332222222334469999953 2334455678888999999999986
No 136
>cd01529 4RHOD_Repeats Member of the Rhodanese Homology Domain superfamily. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. Only the second and most of the fourth repeats contain the putative catalytic Cys residue. This CD aligns the 1st , 2nd, 3rd, and 4th repeats.
Probab=48.14 E-value=41 Score=22.10 Aligned_cols=37 Identities=16% Similarity=0.144 Sum_probs=27.6
Q ss_pred CCCeEEEEechhhHHHHHHHHHHhcCCe-EEEeeCCcc
Q psy2047 193 NGHRVLIFSQFIFVLDILGHYMDIRGWR-HLRLDGATQ 229 (233)
Q Consensus 193 ~~~KvlIFSq~~~~Ld~l~~~l~~~gi~-~~rldG~~~ 229 (233)
.+.++||+|..-..-......|...|+. ...++|++.
T Consensus 55 ~~~~ivv~c~~g~~s~~~~~~l~~~G~~~v~~l~GG~~ 92 (96)
T cd01529 55 RATRYVLTCDGSLLARFAAQELLALGGKPVALLDGGTS 92 (96)
T ss_pred CCCCEEEEeCChHHHHHHHHHHHHcCCCCEEEeCCCHH
Confidence 4568999998755555666677888984 777899874
No 137
>PF00581 Rhodanese: Rhodanese-like domain This Prosite entry represents a subset of this family.; InterPro: IPR001763 Rhodanese, a sulphurtransferase involved in cyanide detoxification (see IPR001307 from INTERPRO) shares evolutionary relationship with a large family of proteins [], including Cdc25 phosphatase catalytic domain. non-catalytic domains of eukaryotic dual-specificity MAPK-phosphatases. non-catalytic domains of yeast PTP-type MAPK-phosphatases. non-catalytic domains of yeast Ubp4, Ubp5, Ubp7. non-catalytic domains of mammalian Ubp-Y. Drosophila heat shock protein HSP-67BB. several bacterial cold-shock and phage shock proteins. plant senescence associated proteins. catalytic and non-catalytic domains of rhodanese (see IPR001307 from INTERPRO). Rhodanese has an internal duplication. This domain is found as a single copy in other proteins, including phosphatases and ubiquitin C-terminal hydrolases [].; PDB: 2J6P_D 2FSX_A 1UAR_A 1OKG_A 1GMX_A 1GN0_A 3NTD_B 3NTA_B 3NT6_A 1C25_A ....
Probab=47.44 E-value=41 Score=22.44 Aligned_cols=38 Identities=11% Similarity=0.194 Sum_probs=23.9
Q ss_pred hCCCeEEEEec----hhhHHHH-HHHHHHhcCC-eEEEeeCCcc
Q psy2047 192 KNGHRVLIFSQ----FIFVLDI-LGHYMDIRGW-RHLRLDGATQ 229 (233)
Q Consensus 192 ~~~~KvlIFSq----~~~~Ld~-l~~~l~~~gi-~~~rldG~~~ 229 (233)
..+.++|++++ ....... +...|...|+ +...++|++.
T Consensus 65 ~~~~~iv~yc~~~~~~~~~~~~~~~~~l~~~g~~~v~~l~GG~~ 108 (113)
T PF00581_consen 65 DKDKDIVFYCSSGWRSGSAAAARVAWILKKLGFKNVYILDGGFE 108 (113)
T ss_dssp TTTSEEEEEESSSCHHHHHHHHHHHHHHHHTTTSSEEEETTHHH
T ss_pred cccccceeeeecccccchhHHHHHHHHHHHcCCCCEEEecChHH
Confidence 34557888882 2233333 3334777898 7888999864
No 138
>COG0653 SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion]
Probab=47.07 E-value=27 Score=33.17 Aligned_cols=53 Identities=23% Similarity=0.273 Sum_probs=47.7
Q ss_pred hccccHHHHHHHHhHHHhCCCeEEEEechhhHHHHHHHHHHhcCCeEEEeeCC
Q psy2047 175 VESGKLKKLDEILPDLKKNGHRVLIFSQFIFVLDILGHYMDIRGWRHLRLDGA 227 (233)
Q Consensus 175 ~~s~Kl~~l~~lL~~~~~~~~KvlIFSq~~~~Ld~l~~~l~~~gi~~~rldG~ 227 (233)
..-.|+.++++.+......|..|||-+-++..=.++...|.+.||++..|+-.
T Consensus 410 t~~~K~~Aiv~~I~~~~~~gqPvLvgT~sie~SE~ls~~L~~~~i~h~VLNAk 462 (822)
T COG0653 410 TEEEKFKAIVEDIKERHEKGQPVLVGTVSIEKSELLSKLLRKAGIPHNVLNAK 462 (822)
T ss_pred chHHHHHHHHHHHHHHHhcCCCEEEcCcceecchhHHHHHHhcCCCceeeccc
Confidence 33689999999999999999999999999999999999999999999877643
No 139
>COG0514 RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair]
Probab=46.95 E-value=19 Score=32.89 Aligned_cols=39 Identities=10% Similarity=0.100 Sum_probs=35.8
Q ss_pred CeEEEEechhhHHHHHHHHHHhcCCeEEEeeCCcccCCC
Q psy2047 195 HRVLIFSQFIFVLDILGHYMDIRGWRHLRLDGATQVSSR 233 (233)
Q Consensus 195 ~KvlIFSq~~~~Ld~l~~~l~~~gi~~~rldG~~~~~~R 233 (233)
.-.|||+..+..-+-|...|...|+....++|+++..+|
T Consensus 231 ~~GIIYc~sRk~~E~ia~~L~~~g~~a~~YHaGl~~~eR 269 (590)
T COG0514 231 KSGIIYCLTRKKVEELAEWLRKNGISAGAYHAGLSNEER 269 (590)
T ss_pred CCeEEEEeeHHhHHHHHHHHHHCCCceEEecCCCCHHHH
Confidence 347999999999999999999999999999999987665
No 140
>cd08185 Fe-ADH1 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenases-like (ADH). Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions. The protein structure represents a dehydroquinate synthase fold and is a member of the iron-containing alcohol dehydrogenase-like family. They are distinct from other alcohol dehydrogenases which contain different protein domains. Proteins of this family have not been characterized. Their specific function is unknown. They are present in bacteria and archaea.
Probab=45.13 E-value=65 Score=27.63 Aligned_cols=49 Identities=24% Similarity=0.267 Sum_probs=34.1
Q ss_pred cccHHHHHHHHhHHHhCCCeEEEEec-----hhhHHHHHHHHHHhcCCeEEEeeCCc
Q psy2047 177 SGKLKKLDEILPDLKKNGHRVLIFSQ-----FIFVLDILGHYMDIRGWRHLRLDGAT 228 (233)
Q Consensus 177 s~Kl~~l~~lL~~~~~~~~KvlIFSq-----~~~~Ld~l~~~l~~~gi~~~rldG~~ 228 (233)
.+-+..+-+.+.. .|.|++|++. ....++.+...|+..|+.+..++|-.
T Consensus 11 ~g~l~~l~~~~~~---~g~r~livt~~~~~~~~g~~~~v~~~L~~~~~~~~~~~~v~ 64 (380)
T cd08185 11 AGKLNELGEEALK---PGKKALIVTGNGSSKKTGYLDRVIELLKQAGVEVVVFDKVE 64 (380)
T ss_pred cCHHHHHHHHHHh---cCCeEEEEeCCCchhhccHHHHHHHHHHHcCCeEEEeCCcc
Confidence 4556666555544 3578888884 23467888888888899988887754
No 141
>cd01449 TST_Repeat_2 Thiosulfate sulfurtransferase (TST), C-terminal, catalytic domain. TST contains 2 copies of the Rhodanese Homology Domain; this is the second repeat. Only the second repeat contains the catalytically active Cys residue.
Probab=44.94 E-value=55 Score=22.34 Aligned_cols=37 Identities=14% Similarity=0.196 Sum_probs=27.7
Q ss_pred CCCeEEEEechhhHHHHHHHHHHhcCCe-EEEeeCCcc
Q psy2047 193 NGHRVLIFSQFIFVLDILGHYMDIRGWR-HLRLDGATQ 229 (233)
Q Consensus 193 ~~~KvlIFSq~~~~Ld~l~~~l~~~gi~-~~rldG~~~ 229 (233)
.+.++||+|..-..-......|...|++ ...++|++.
T Consensus 77 ~~~~iv~yc~~g~~s~~~~~~l~~~G~~~v~~l~GG~~ 114 (118)
T cd01449 77 PDKPVIVYCGSGVTACVLLLALELLGYKNVRLYDGSWS 114 (118)
T ss_pred CCCCEEEECCcHHHHHHHHHHHHHcCCCCeeeeCChHH
Confidence 3568899988744555667788899995 778899864
No 142
>cd01532 4RHOD_Repeat_1 Member of the Rhodanese Homology Domain superfamily, repeat 1. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 1st repeat which does not contain the putative catalytic Cys residue.
Probab=44.80 E-value=46 Score=21.80 Aligned_cols=36 Identities=11% Similarity=0.150 Sum_probs=26.4
Q ss_pred CCeEEEEech--hhHHHHHHHHHHhcCCe-EEEeeCCcc
Q psy2047 194 GHRVLIFSQF--IFVLDILGHYMDIRGWR-HLRLDGATQ 229 (233)
Q Consensus 194 ~~KvlIFSq~--~~~Ld~l~~~l~~~gi~-~~rldG~~~ 229 (233)
+.++||+|+. ...-......|...|+. +..++|++.
T Consensus 50 ~~~ivl~c~~G~~~~s~~aa~~L~~~G~~~v~~l~GG~~ 88 (92)
T cd01532 50 DTPIVVYGEGGGEDLAPRAARRLSELGYTDVALLEGGLQ 88 (92)
T ss_pred CCeEEEEeCCCCchHHHHHHHHHHHcCccCEEEccCCHH
Confidence 5689999987 33345666778888985 667899874
No 143
>cd01527 RHOD_YgaP Member of the Rhodanese Homology Domain superfamily. This CD includes Escherichia coli YgaP, and similar uncharacterized putative rhodanese-related sulfurtransferases.
Probab=44.73 E-value=42 Score=22.17 Aligned_cols=37 Identities=5% Similarity=0.030 Sum_probs=27.8
Q ss_pred CCCeEEEEechhhHHHHHHHHHHhcCC-eEEEeeCCcc
Q psy2047 193 NGHRVLIFSQFIFVLDILGHYMDIRGW-RHLRLDGATQ 229 (233)
Q Consensus 193 ~~~KvlIFSq~~~~Ld~l~~~l~~~gi-~~~rldG~~~ 229 (233)
.+.++|++|..-..-......|.+.|+ +...++|++.
T Consensus 53 ~~~~iv~~c~~g~~s~~~~~~L~~~g~~~v~~l~gG~~ 90 (99)
T cd01527 53 GANAIIFHCRSGMRTQQNAERLAAISAGEAYVLEGGLD 90 (99)
T ss_pred CCCcEEEEeCCCchHHHHHHHHHHcCCccEEEeeCCHH
Confidence 356899998886556677778888888 4667999864
No 144
>cd01525 RHOD_Kc Member of the Rhodanese Homology Domain superfamily. Included in this CD are the rhodanese-like domains found C-terminal of the serine/threonine protein kinases catalytic (S_TKc) domain and the Tre-2, BUB2p, Cdc16p (TBC) domain. The putative active site Cys residue is not present in this CD.
Probab=44.04 E-value=42 Score=22.36 Aligned_cols=36 Identities=19% Similarity=0.221 Sum_probs=27.2
Q ss_pred CCeEEEEechhhHHHHHHHHHHhcCCe-EEEeeCCcc
Q psy2047 194 GHRVLIFSQFIFVLDILGHYMDIRGWR-HLRLDGATQ 229 (233)
Q Consensus 194 ~~KvlIFSq~~~~Ld~l~~~l~~~gi~-~~rldG~~~ 229 (233)
+..+||+|..-..-......|...|+. +..++|+++
T Consensus 65 ~~~vv~~c~~g~~s~~~a~~L~~~G~~~v~~l~GG~~ 101 (105)
T cd01525 65 GKIIVIVSHSHKHAALFAAFLVKCGVPRVCILDGGIN 101 (105)
T ss_pred CCeEEEEeCCCccHHHHHHHHHHcCCCCEEEEeCcHH
Confidence 567888887655555666788889996 667999875
No 145
>TIGR01689 EcbF-BcbF capsule biosynthesis phosphatase. Due to the likelihood that the substrates of these enzymes are different depending on the nature of the particular polysaccharides associated with each species, this model has been classified as a subfamily despite the close homology.
Probab=43.49 E-value=61 Score=23.12 Aligned_cols=45 Identities=18% Similarity=0.093 Sum_probs=32.3
Q ss_pred HHHHHHHhHHHhCCCeEEEEechh-------------hHHHHHHHHHHhcCCeEEEee
Q psy2047 181 KKLDEILPDLKKNGHRVLIFSQFI-------------FVLDILGHYMDIRGWRHLRLD 225 (233)
Q Consensus 181 ~~l~~lL~~~~~~~~KvlIFSq~~-------------~~Ld~l~~~l~~~gi~~~rld 225 (233)
.-.++.|+++.+.|.+++++|-=- .++..+...|.++|++|-.|.
T Consensus 27 ~~~ie~L~~l~~~G~~IiiaTGR~~~~~~~n~~~i~~~~~~~t~~wL~k~~ipYd~l~ 84 (126)
T TIGR01689 27 LAVIEKLRHYKALGFEIVISSSRNMRTYEGNVGKINIHTLPIIILWLNQHNVPYDEIY 84 (126)
T ss_pred HHHHHHHHHHHHCCCEEEEECCCCchhhhccccccchhhHHHHHHHHHHcCCCCceEE
Confidence 345566777778899998888321 234688899999999985443
No 146
>TIGR03190 benz_CoA_bzdN benzoyl-CoA reductase, bzd-type, N subunit. Members of this family are the N subunit of one of two related types of four-subunit ATP-dependent benzoyl-CoA reductase. This enzyme system catalyzes the dearomatization of benzoyl-CoA, a common intermediate in pathways for the degradation for a number of different aromatic compounds, such as phenol and toluene.
Probab=43.14 E-value=56 Score=28.06 Aligned_cols=49 Identities=12% Similarity=0.087 Sum_probs=33.9
Q ss_pred cHHHHHHHHhHHHhCCCeEEEEech-----hhHHHHHHHHHHhcCCeEEEeeCCcc
Q psy2047 179 KLKKLDEILPDLKKNGHRVLIFSQF-----IFVLDILGHYMDIRGWRHLRLDGATQ 229 (233)
Q Consensus 179 Kl~~l~~lL~~~~~~~~KvlIFSq~-----~~~Ld~l~~~l~~~gi~~~rldG~~~ 229 (233)
++..+.+++++....| ||.|+++ ....-.|...|++.||+++.|+|+.+
T Consensus 301 R~~~i~~lv~~~~~DG--VI~~~~kfC~~~~~e~~~lk~~l~e~GIP~L~iE~D~~ 354 (377)
T TIGR03190 301 RYDHVLGLAKEYNVQG--AIFLQQKFCDPHEGDYPDLKRHLEANGIPTLFLEFDIT 354 (377)
T ss_pred HHHHHHHHHHHhCCCE--EEEecccCCCcchhhhHHHHHHHHHCCCCEEEEecCCC
Confidence 6777777777764443 4444432 23444688889999999999999876
No 147
>cd01444 GlpE_ST GlpE sulfurtransferase (ST) and homologs are members of the Rhodanese Homology Domain superfamily. Unlike other rhodanese sulfurtransferases, GlpE is a single domain protein but indications are that it functions as a dimer. The active site contains a catalytically active cysteine.
Probab=42.25 E-value=44 Score=21.74 Aligned_cols=37 Identities=14% Similarity=0.160 Sum_probs=30.1
Q ss_pred CCCeEEEEechhhHHHHHHHHHHhcCCe-EEEeeCCcc
Q psy2047 193 NGHRVLIFSQFIFVLDILGHYMDIRGWR-HLRLDGATQ 229 (233)
Q Consensus 193 ~~~KvlIFSq~~~~Ld~l~~~l~~~gi~-~~rldG~~~ 229 (233)
.+.++||+|+.-..-......|...|+. +..++|++.
T Consensus 55 ~~~~ivv~c~~g~~s~~a~~~l~~~G~~~v~~l~gG~~ 92 (96)
T cd01444 55 RDRPVVVYCYHGNSSAQLAQALREAGFTDVRSLAGGFE 92 (96)
T ss_pred CCCCEEEEeCCCChHHHHHHHHHHcCCceEEEcCCCHH
Confidence 4568999999777778888999999985 668888864
No 148
>KOG0344|consensus
Probab=42.20 E-value=46 Score=30.16 Aligned_cols=55 Identities=24% Similarity=0.130 Sum_probs=45.1
Q ss_pred cccHHHHHHHHhHHHhCCCeEEEEechhhHHHHHHHHH-HhcCCeEEEeeCCcccCCC
Q psy2047 177 SGKLKKLDEILPDLKKNGHRVLIFSQFIFVLDILGHYM-DIRGWRHLRLDGATQVSSR 233 (233)
Q Consensus 177 s~Kl~~l~~lL~~~~~~~~KvlIFSq~~~~Ld~l~~~l-~~~gi~~~rldG~~~~~~R 233 (233)
-+|+.++.+++..... --+|||-|....-.-|-..| ...+|+.-.++|.-+..+|
T Consensus 372 ~~K~lA~rq~v~~g~~--PP~lIfVQs~eRak~L~~~L~~~~~i~v~vIh~e~~~~qr 427 (593)
T KOG0344|consen 372 KGKLLALRQLVASGFK--PPVLIFVQSKERAKQLFEELEIYDNINVDVIHGERSQKQR 427 (593)
T ss_pred hhHHHHHHHHHhccCC--CCeEEEEecHHHHHHHHHHhhhccCcceeeEecccchhHH
Confidence 6889999888877643 36999999988877777777 6789999999999887665
No 149
>PF12646 DUF3783: Domain of unknown function (DUF3783); InterPro: IPR016621 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=41.64 E-value=52 Score=19.81 Aligned_cols=25 Identities=28% Similarity=0.264 Sum_probs=15.4
Q ss_pred eEEEEechhh-HHHHHHHHHHhcCCe
Q psy2047 196 RVLIFSQFIF-VLDILGHYMDIRGWR 220 (233)
Q Consensus 196 KvlIFSq~~~-~Ld~l~~~l~~~gi~ 220 (233)
+++||+.+.. .++.+-..+++.|++
T Consensus 2 ~~ll~~g~~~~el~~~l~~~r~~~~~ 27 (58)
T PF12646_consen 2 EFLLFSGFSGEELDKFLDALRKAGIP 27 (58)
T ss_pred CEEEECCCCHHHHHHHHHHHHHcCCC
Confidence 5667777664 556666666666653
No 150
>PF04007 DUF354: Protein of unknown function (DUF354); InterPro: IPR007152 Members of this family are around 350 amino acids in length. They are found in archaea and some bacteria and have no known function.
Probab=41.48 E-value=77 Score=26.83 Aligned_cols=49 Identities=22% Similarity=0.366 Sum_probs=39.0
Q ss_pred hccccHHHHHHHHhHHHhCCCeEEEEechhhHHHHHHHHHHhcCCeEEEeeC
Q psy2047 175 VESGKLKKLDEILPDLKKNGHRVLIFSQFIFVLDILGHYMDIRGWRHLRLDG 226 (233)
Q Consensus 175 ~~s~Kl~~l~~lL~~~~~~~~KvlIFSq~~~~Ld~l~~~l~~~gi~~~rldG 226 (233)
.+++-.-++..+++++.+.|+.|+|.+.-. +.+...|+..|++|..+-+
T Consensus 8 ~~p~hvhfFk~~I~eL~~~GheV~it~R~~---~~~~~LL~~yg~~y~~iG~ 56 (335)
T PF04007_consen 8 THPAHVHFFKNIIRELEKRGHEVLITARDK---DETEELLDLYGIDYIVIGK 56 (335)
T ss_pred CCchHHHHHHHHHHHHHhCCCEEEEEEecc---chHHHHHHHcCCCeEEEcC
Confidence 446677888899999999999999998765 4556667778999998854
No 151
>KOG0337|consensus
Probab=41.39 E-value=35 Score=29.82 Aligned_cols=58 Identities=14% Similarity=0.092 Sum_probs=48.5
Q ss_pred hccccHHHHHHHHhHHHhCCCeEEEEechhhHHHHHHHHHHhcCCeEEEeeCCcccCCC
Q psy2047 175 VESGKLKKLDEILPDLKKNGHRVLIFSQFIFVLDILGHYMDIRGWRHLRLDGATQVSSR 233 (233)
Q Consensus 175 ~~s~Kl~~l~~lL~~~~~~~~KvlIFSq~~~~Ld~l~~~l~~~gi~~~rldG~~~~~~R 233 (233)
..-.|..+|+.++..... +...+||..-.....++...|...|+...-+.|+++...|
T Consensus 243 ~~a~K~aaLl~il~~~~~-~~~t~vf~~tk~hve~~~~ll~~~g~~~s~iysslD~~aR 300 (529)
T KOG0337|consen 243 RKAEKEAALLSILGGRIK-DKQTIVFVATKHHVEYVRGLLRDFGGEGSDIYSSLDQEAR 300 (529)
T ss_pred ccHHHHHHHHHHHhcccc-ccceeEEecccchHHHHHHHHHhcCCCccccccccChHhh
Confidence 346788888888877543 3579999999999999999999999999999999987654
No 152
>PF10740 DUF2529: Protein of unknown function (DUF2529); InterPro: IPR019676 This entry represents a protein family conserved in the Bacillales. Their function is not known. ; PDB: 3JX9_A.
Probab=40.59 E-value=49 Score=25.02 Aligned_cols=33 Identities=24% Similarity=0.278 Sum_probs=20.9
Q ss_pred CCCeEEEEechhhH--HHHHHHHHHhcCCeEEEee
Q psy2047 193 NGHRVLIFSQFIFV--LDILGHYMDIRGWRHLRLD 225 (233)
Q Consensus 193 ~~~KvlIFSq~~~~--Ld~l~~~l~~~gi~~~rld 225 (233)
.-++|++||.|..- .--+...|..+|++++-+.
T Consensus 81 ~~DRVllfs~~~~~~e~~~~a~~L~~~gi~~v~Vs 115 (172)
T PF10740_consen 81 ETDRVLLFSPFSTDEEAVALAKQLIEQGIPFVGVS 115 (172)
T ss_dssp TT-EEEEEES-S--HHHHHHHHHHHHHT--EEEEE
T ss_pred ccceEEEEeCCCCCHHHHHHHHHHHHCCCCEEEEE
Confidence 35799999999876 3344566788999999887
No 153
>PF00782 DSPc: Dual specificity phosphatase, catalytic domain; InterPro: IPR000340 Protein tyrosine (pTyr) phosphorylation is a common post-translational modification which can create novel recognition motifs for protein interactions and cellular localisation, affect protein stability, and regulate enzyme activity. Consequently, maintaining an appropriate level of protein tyrosine phosphorylation is essential for many cellular functions. Tyrosine-specific protein phosphatases (PTPase; 3.1.3.48 from EC) catalyse the removal of a phosphate group attached to a tyrosine residue, using a cysteinyl-phosphate enzyme intermediate. These enzymes are key regulatory components in signal transduction pathways (such as the MAP kinase pathway) and cell cycle control, and are important in the control of cell growth, proliferation, differentiation and transformation [, ]. The PTP superfamily can be divided into four subfamilies []: (1) pTyr-specific phosphatases (2) dual specificity phosphatases (dTyr and dSer/dThr) (3) Cdc25 phosphatases (dTyr and/or dThr) (4) LMW (low molecular weight) phosphatases Based on their cellular localisation, PTPases are also classified as: Receptor-like, which are transmembrane receptors that contain PTPase domains [] Non-receptor (intracellular) PTPases [] All PTPases carry the highly conserved active site motif C(X)5R (PTP signature motif), employ a common catalytic mechanism, and share a similar core structure made of a central parallel beta-sheet with flanking alpha-helices containing a beta-loop-alpha-loop that encompasses the PTP signature motif []. Functional diversity between PTPases is endowed by regulatory domains and subunits. This entry represents dual specificity protein-tyrosine phosphatases. Ser/Thr and Tyr dual specificity phosphatases are a group of enzymes with both Ser/Thr (3.1.3.16 from EC) and tyrosine specific protein phosphatase (3.1.3.48 from EC) activity able to remove both the serine/threonine or tyrosine-bound phosphate group from a wide range of phosphoproteins, including a number of enzymes which have been phosphorylated under the action of a kinase. Dual specificity protein phosphatases (DSPs) regulate mitogenic signal transduction and control the cell cycle. The crystal structure of a human DSP, vaccinia H1-related phosphatase (or VHR), has been determined at 2.1 angstrom resolution []. A shallow active site pocket in VHR allows for the hydrolysis of phosphorylated serine, threonine, or tyrosine protein residues, whereas the deeper active site of protein tyrosine phosphatases (PTPs) restricts substrate specificity to only phosphotyrosine. Positively charged crevices near the active site may explain the enzyme's preference for substrates with two phosphorylated residues. The VHR structure defines a conserved structural scaffold for both DSPs and PTPs. A "recognition region" connecting helix alpha1 to strand beta1, may determine differences in substrate specificity between VHR, the PTPs, and other DSPs. These proteins may also have inactive phosphatase domains, and dependent on the domain composition this loss of catalytic activity has different effects on protein function. Inactive single domain phosphatases can still specifically bind substrates, and protect again dephosphorylation, while the inactive domains of tandem phosphatases can be further subdivided into two classes. Those which bind phosphorylated tyrosine residues may recruit multi-phosphorylated substrates for the adjacent active domains and are more conserved, while the other class have accumulated several variable amino acid substitutions and have a complete loss of tyrosine binding capability. The second class shows a release of evolutionary constraint for the sites around the catalytic centre, which emphasises a difference in function from the first group. There is a region of higher conservation common to both classes, suggesting a new regulatory centre [].; GO: 0008138 protein tyrosine/serine/threonine phosphatase activity, 0006470 protein dephosphorylation; PDB: 2G6Z_A 1MKP_A 1YZ4_A 2P4D_A 1M3G_A 1ZZW_A 2OUD_A 2HXP_A 3LJ8_A 1OHD_A ....
Probab=40.43 E-value=82 Score=22.01 Aligned_cols=44 Identities=16% Similarity=0.124 Sum_probs=31.2
Q ss_pred cccHHHHHHHHhHHHhCCCeEEEEech---hhHHHHHHHHHHhcCCe
Q psy2047 177 SGKLKKLDEILPDLKKNGHRVLIFSQF---IFVLDILGHYMDIRGWR 220 (233)
Q Consensus 177 s~Kl~~l~~lL~~~~~~~~KvlIFSq~---~~~Ld~l~~~l~~~gi~ 220 (233)
..-+..+.++|+.....+.+|+|.|+. ++..=.+..++...|++
T Consensus 56 ~~~~~~~~~~i~~~~~~~~~VlVHC~~G~~RS~~v~~ayLm~~~~~~ 102 (133)
T PF00782_consen 56 LEHLDQAVEFIENAISEGGKVLVHCKAGLSRSGAVAAAYLMKKNGMS 102 (133)
T ss_dssp GGGHHHHHHHHHHHHHTTSEEEEEESSSSSHHHHHHHHHHHHHHTSS
T ss_pred HHHHHHHHHhhhhhhcccceeEEEeCCCcccchHHHHHHHHHHcCCC
Confidence 567778888998888889999999986 44444444455555543
No 154
>cd01526 RHOD_ThiF Member of the Rhodanese Homology Domain superfamily. This CD includes several putative molybdopterin synthase sulfurylases including the molybdenum cofactor biosynthetic protein (CnxF) of Aspergillus nidulans and the molybdenum cofactor synthesis protein 3 (MOCS3) of Homo sapiens. These rhodanese-like domains are found C-terminal of the ThiF and MoeZ_MoeB domains.
Probab=40.22 E-value=33 Score=23.93 Aligned_cols=37 Identities=5% Similarity=-0.095 Sum_probs=28.3
Q ss_pred CCCeEEEEechhhHHHHHHHHHHhcCC--eEEEeeCCcc
Q psy2047 193 NGHRVLIFSQFIFVLDILGHYMDIRGW--RHLRLDGATQ 229 (233)
Q Consensus 193 ~~~KvlIFSq~~~~Ld~l~~~l~~~gi--~~~rldG~~~ 229 (233)
.+..++|+|+.-..-......|...|+ ++..++|++.
T Consensus 71 ~~~~ivv~C~~G~rs~~aa~~L~~~G~~~~v~~l~GG~~ 109 (122)
T cd01526 71 KDSPIYVVCRRGNDSQTAVRKLKELGLERFVRDIIGGLK 109 (122)
T ss_pred CCCcEEEECCCCCcHHHHHHHHHHcCCccceeeecchHH
Confidence 356889999775555566778899999 5888999874
No 155
>cd01519 RHOD_HSP67B2 Member of the Rhodanese Homology Domain superfamily. This CD includes the heat shock protein 67B2 of Drosophila melanogaster and other similar proteins, many of which are uncharacterized.
Probab=39.61 E-value=43 Score=22.34 Aligned_cols=36 Identities=6% Similarity=0.039 Sum_probs=28.0
Q ss_pred CCeEEEEechhhHHHHHHHHHHhcCCe-EEEeeCCcc
Q psy2047 194 GHRVLIFSQFIFVLDILGHYMDIRGWR-HLRLDGATQ 229 (233)
Q Consensus 194 ~~KvlIFSq~~~~Ld~l~~~l~~~gi~-~~rldG~~~ 229 (233)
+..+||+|..-..-......|...|+. ...++|++.
T Consensus 66 ~~~ivv~c~~g~~s~~~~~~l~~~G~~~v~~~~Gg~~ 102 (106)
T cd01519 66 DKELIFYCKAGVRSKAAAELARSLGYENVGNYPGSWL 102 (106)
T ss_pred CCeEEEECCCcHHHHHHHHHHHHcCCccceecCCcHH
Confidence 568899988766666778888999996 666788874
No 156
>PF13361 UvrD_C: UvrD-like helicase C-terminal domain; PDB: 1UAA_B 3U4Q_A 3U44_A 1W36_B 3K70_B 2IS6_B 3LFU_A 2IS2_B 2IS1_B 2IS4_A ....
Probab=39.15 E-value=1.3e+02 Score=24.70 Aligned_cols=49 Identities=14% Similarity=0.276 Sum_probs=33.6
Q ss_pred HHHHHHHhHHHhCC---CeEEEEechhhHHHHHHHHHHhcCCeEEEeeCCccc
Q psy2047 181 KKLDEILPDLKKNG---HRVLIFSQFIFVLDILGHYMDIRGWRHLRLDGATQV 230 (233)
Q Consensus 181 ~~l~~lL~~~~~~~---~KvlIFSq~~~~Ld~l~~~l~~~gi~~~rldG~~~~ 230 (233)
..+.+.|..+...| .++-|.+.....+..|+..|...||+| ++.|+.+.
T Consensus 61 ~~i~~~I~~l~~~~~~~~diAVL~R~~~~~~~i~~~L~~~gIp~-~~~~~~~~ 112 (351)
T PF13361_consen 61 EYIAEEIKELIRNGIPPSDIAVLVRTNSQIKEIEDALKEAGIPY-RISGSKSL 112 (351)
T ss_dssp HHHHHHHHHHHHTTS-GGGEEEEESSGGHHHHHHHHHHHTTS-E-EESSSSBG
T ss_pred HHHHHHHHHHhhcCCCcccEEEEEECchhHHHHHHHHhhhccee-Eeccccch
Confidence 44444455443332 367777777999999999999999997 66666543
No 157
>cd08187 BDH Butanol dehydrogenase catalyzes the conversion of butyraldehyde to butanol with the cofactor NAD(P)H being oxidized in the process. The butanol dehydrogenase (BDH) is involved in the final step of the butanol formation pathway in anaerobic micro-organism. Butanol dehydrogenase catalyzes the conversion of butyraldehyde to butanol with the cofactor NAD(P)H being oxidized in the process. Activity in the reverse direction was 50-fold lower than that in the forward direction. The NADH-BDH had higher activity with longer chained aldehydes and was inhibited by metabolites containing an adenine moiety. This protein family belongs to the so-called iron-containing alcohol dehydrogenase superfamily. Since members of this superfamily use different divalent ions, preferentially iron or zinc, it has been suggested to be renamed to family III metal-dependent polyol dehydrogenases.
Probab=38.84 E-value=82 Score=27.05 Aligned_cols=55 Identities=18% Similarity=0.263 Sum_probs=39.4
Q ss_pred hhhhccccHHHHHHHHhHHHhCCCeEEEEec---hh--hHHHHHHHHHHhcCCeEEEeeCCcc
Q psy2047 172 DLVVESGKLKKLDEILPDLKKNGHRVLIFSQ---FI--FVLDILGHYMDIRGWRHLRLDGATQ 229 (233)
Q Consensus 172 ~~~~~s~Kl~~l~~lL~~~~~~~~KvlIFSq---~~--~~Ld~l~~~l~~~gi~~~rldG~~~ 229 (233)
......+.+..+-++++.+ +.|++|++. +. ..++.+...|+..|+.+..++|-.+
T Consensus 9 ~i~~G~g~~~~l~~~~~~~---~~r~livt~~~~~~~~~~~~~v~~~L~~~g~~~~~~~~v~~ 68 (382)
T cd08187 9 KIIFGKGTESELGKELKKY---GKKVLLVYGGGSIKKNGLYDRVIASLKEAGIEVVELGGVEP 68 (382)
T ss_pred EEEECCCHHHHHHHHHHHh---CCEEEEEeCCcHHHhcCcHHHHHHHHHHcCCeEEEECCccC
Confidence 3334456777777777665 578888864 22 3478889999999999998987543
No 158
>cd03769 SR_IS607_transposase_like Serine Recombinase (SR) family, IS607-like transposase subfamily, catalytic domain; members contain a DNA binding domain with homology to MerR/SoxR located N-terminal to the catalytic domain. Serine recombinases catalyze site-specific recombination of DNA molecules by a concerted, four-strand cleavage and rejoining mechanism which involves a transient phosphoserine linkage between DNA and the enzyme. They are functionally versatile and include resolvases, invertases, integrases, and transposases. This subfamily is composed of proteins that catalyze the transposition of insertion sequence (IS) elements such as IS607 from Helicobacter and IS1535 from Mycobacterium, and similar proteins from other bacteria and several archaeal species. IS elements are DNA segments that move to new sites in prokaryotic and eukaryotic genomes causing insertion mutations and gene rearrangements.
Probab=38.43 E-value=1.5e+02 Score=21.20 Aligned_cols=48 Identities=15% Similarity=0.214 Sum_probs=31.0
Q ss_pred HHHHHHHhHHHhCCCeEEEEec----hhhHHHHHHHHHHhcCCeEEEeeCCc
Q psy2047 181 KKLDEILPDLKKNGHRVLIFSQ----FIFVLDILGHYMDIRGWRHLRLDGAT 228 (233)
Q Consensus 181 ~~l~~lL~~~~~~~~KvlIFSq----~~~~Ld~l~~~l~~~gi~~~rldG~~ 228 (233)
..+.++|+.+....-.+||+.. .....+++...|+..|+....++...
T Consensus 49 p~l~~ll~~i~~g~~d~lvV~~ldRl~R~~~d~~~~~l~~~gv~l~~~~~~~ 100 (134)
T cd03769 49 KGLLKLLEDVLAGKVERVVITYKDRLARFGFELLEELFKAYGVEIVVINQEE 100 (134)
T ss_pred HHHHHHHHHHHcCCCCEEEEEeccHHHHhhHHHHHHHHHHCCCEEEEEeCCC
Confidence 4455556555433324555432 34578888888999999988888764
No 159
>PF12926 MOZART2: Mitotic-spindle organizing gamma-tubulin ring associated; InterPro: IPR024332 The MOZART2 family of proteins (also known as FAM128 and Mitotic-spindle organizing protein 2) operate as part of the gamma-tubulin ring complex, gamma-TuRC, one of the complexes necessary for chromosome segregation. This complex is located at centrosomes and mediates the formation of bipolar spindles in mitosis; it consists of six subunits. However, unlike the other four known subunits, the MOZART proteins, both 1 and 2, do not carry the conserved 'Spc97-Spc98' GCP domain, so the TUBGCP nomenclature cannot be used for it. The exact function of MOZART2 is not clear [].
Probab=38.35 E-value=69 Score=21.29 Aligned_cols=41 Identities=10% Similarity=0.093 Sum_probs=29.3
Q ss_pred CCHHHHHHHHHHHHHHhhhcCCCCCCCCccchhhHHHHHHHHhhccccchh
Q psy2047 61 MIPSQAEKYRGLMEDFKKTANPEGSNRSNEISHMSMFMMLRKMANHPLGLR 111 (233)
Q Consensus 61 ls~~q~~lY~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~Lr~~c~hp~l~~ 111 (233)
|++.|.+||+-.... .-.-.-.+|..+..|-+++.||..+.
T Consensus 23 Ls~eE~EL~ELa~~A----------Gv~~dp~VFriildLL~~nVsP~AI~ 63 (88)
T PF12926_consen 23 LSAEEVELYELAQLA----------GVPMDPEVFRIILDLLRLNVSPDAIF 63 (88)
T ss_pred cCHHHHHHHHHHHHh----------CCCcChHHHHHHHHHHHcCCCHHHHH
Confidence 589999999866542 11222457888888999999997654
No 160
>COG2241 CobL Precorrin-6B methylase 1 [Coenzyme metabolism]
Probab=38.29 E-value=58 Score=25.56 Aligned_cols=40 Identities=20% Similarity=0.299 Sum_probs=32.3
Q ss_pred cccHHHHHHHHhHHHhCCCeEEEEechhhHHHHHHHHHHhcCCe
Q psy2047 177 SGKLKKLDEILPDLKKNGHRVLIFSQFIFVLDILGHYMDIRGWR 220 (233)
Q Consensus 177 s~Kl~~l~~lL~~~~~~~~KvlIFSq~~~~Ld~l~~~l~~~gi~ 220 (233)
+-+...+..++ ..+.++||++.+..+-..|..+|...|+.
T Consensus 127 gr~~~~l~~~~----~~~~~~vil~~~~~~P~~IA~~L~~~G~~ 166 (210)
T COG2241 127 GRPVELLRPLL----ENGRRLVILTPDDFGPAEIAKLLTENGIG 166 (210)
T ss_pred CCCHHHHHHHH----hCCceEEEeCCCCCCHHHHHHHHHhCCCC
Confidence 44555554444 55889999999999999999999999985
No 161
>PRK09860 putative alcohol dehydrogenase; Provisional
Probab=38.10 E-value=94 Score=26.75 Aligned_cols=53 Identities=19% Similarity=0.280 Sum_probs=36.3
Q ss_pred hhccccHHHHHHHHhHHHhCC-CeEEEEech----hhHHHHHHHHHHhcCCeEEEeeCCcc
Q psy2047 174 VVESGKLKKLDEILPDLKKNG-HRVLIFSQF----IFVLDILGHYMDIRGWRHLRLDGATQ 229 (233)
Q Consensus 174 ~~~s~Kl~~l~~lL~~~~~~~-~KvlIFSq~----~~~Ld~l~~~l~~~gi~~~rldG~~~ 229 (233)
+...+.+..+-+.++.+ | .|++|++.- ...++.+...|+..|+.+..++|-.+
T Consensus 13 ~~G~g~~~~l~~~~~~~---g~~~~livt~~~~~~~g~~~~v~~~L~~~~i~~~~f~~v~~ 70 (383)
T PRK09860 13 VIGADSLTDAMNMMADY---GFTRTLIVTDNMLTKLGMAGDVQKALEERNIFSVIYDGTQP 70 (383)
T ss_pred EECcCHHHHHHHHHHhc---CCCEEEEEcCcchhhCccHHHHHHHHHHcCCeEEEeCCCCC
Confidence 33346666666666553 4 588777642 34678888888889999888888544
No 162
>KOG0354|consensus
Probab=37.81 E-value=1e+02 Score=29.08 Aligned_cols=55 Identities=25% Similarity=0.219 Sum_probs=42.3
Q ss_pred hccccHHHHHHHHhHHHhC--CCeEEEEechhhHHHHHHHHHHh---cCCeEEEeeCCcc
Q psy2047 175 VESGKLKKLDEILPDLKKN--GHRVLIFSQFIFVLDILGHYMDI---RGWRHLRLDGATQ 229 (233)
Q Consensus 175 ~~s~Kl~~l~~lL~~~~~~--~~KvlIFSq~~~~Ld~l~~~l~~---~gi~~~rldG~~~ 229 (233)
....|+..+.++|-+-... ..++|||+.++...+.|...|.. -|++.--+-|.-.
T Consensus 392 ~~npkle~l~~~l~e~f~~~~dsR~IIFve~R~sa~~l~~~l~~~~~~~ir~~~fiGq~~ 451 (746)
T KOG0354|consen 392 KENPKLEKLVEILVEQFEQNPDSRTIIFVETRESALALKKWLLQLHELGIKAEIFIGQGK 451 (746)
T ss_pred ccChhHHHHHHHHHHHhhcCCCccEEEEEehHHHHHHHHHHHHhhhhcccccceeeeccc
Confidence 3478999999998766544 34999999999999998888873 3667666766543
No 163
>PF13344 Hydrolase_6: Haloacid dehalogenase-like hydrolase; PDB: 2HO4_B 1YV9_A 1WVI_B 3EPR_A 2P27_A 2OYC_A 2CFT_A 2P69_A 2CFS_A 2CFR_A ....
Probab=37.64 E-value=82 Score=21.25 Aligned_cols=38 Identities=16% Similarity=0.153 Sum_probs=26.9
Q ss_pred HHHHHhHHHhCCCeEEEEechh-hHHHHHHHHHHhcCCe
Q psy2047 183 LDEILPDLKKNGHRVLIFSQFI-FVLDILGHYMDIRGWR 220 (233)
Q Consensus 183 l~~lL~~~~~~~~KvlIFSq~~-~~Ld~l~~~l~~~gi~ 220 (233)
..+.|+.+++.|.+++++|+.. .+-.-+...|+..|++
T Consensus 19 a~e~l~~L~~~g~~~~~lTNns~~s~~~~~~~L~~~Gi~ 57 (101)
T PF13344_consen 19 AVEALDALRERGKPVVFLTNNSSRSREEYAKKLKKLGIP 57 (101)
T ss_dssp HHHHHHHHHHTTSEEEEEES-SSS-HHHHHHHHHHTTTT
T ss_pred HHHHHHHHHHcCCCEEEEeCCCCCCHHHHHHHHHhcCcC
Confidence 3567777778888999999886 4446666667888876
No 164
>PF07652 Flavi_DEAD: Flavivirus DEAD domain ; InterPro: IPR011492 This is the Flavivirus DEAD domain. The domain is related to the DEAD/DEAH box helicase domain which is found in a large family of ATPases.; GO: 0005524 ATP binding, 0008026 ATP-dependent helicase activity, 0019079 viral genome replication; PDB: 2QEQ_A 2V6J_A 2V6I_A 8OHM_A 4A92_B 1JR6_A 1HEI_A 1ONB_A 1A1V_A 1YMF_A ....
Probab=37.63 E-value=64 Score=23.77 Aligned_cols=45 Identities=24% Similarity=0.235 Sum_probs=37.1
Q ss_pred ccccHH-HHHHHHhHHHhCCCeEEEEechhhHHHHHHHHHHhcCCe
Q psy2047 176 ESGKLK-KLDEILPDLKKNGHRVLIFSQFIFVLDILGHYMDIRGWR 220 (233)
Q Consensus 176 ~s~Kl~-~l~~lL~~~~~~~~KvlIFSq~~~~Ld~l~~~l~~~gi~ 220 (233)
.+||-. +|-+++++....+.|+||-..-+...+-...+|+..++.
T Consensus 14 GaGKTr~vlp~~~~~~i~~~~rvLvL~PTRvva~em~~aL~~~~~~ 59 (148)
T PF07652_consen 14 GAGKTRRVLPEIVREAIKRRLRVLVLAPTRVVAEEMYEALKGLPVR 59 (148)
T ss_dssp TSSTTTTHHHHHHHHHHHTT--EEEEESSHHHHHHHHHHTTTSSEE
T ss_pred CCCCcccccHHHHHHHHHccCeEEEecccHHHHHHHHHHHhcCCcc
Confidence 378877 588899999999999999999999999999999766544
No 165
>PRK13958 N-(5'-phosphoribosyl)anthranilate isomerase; Provisional
Probab=37.55 E-value=85 Score=24.48 Aligned_cols=48 Identities=10% Similarity=0.254 Sum_probs=33.1
Q ss_pred HHHHHHHhHHHhCCCeEEEEechhhHHHHHHHHHHhcCCeEEEeeCCccc
Q psy2047 181 KKLDEILPDLKKNGHRVLIFSQFIFVLDILGHYMDIRGWRHLRLDGATQV 230 (233)
Q Consensus 181 ~~l~~lL~~~~~~~~KvlIFSq~~~~Ld~l~~~l~~~gi~~~rldG~~~~ 230 (233)
....++...+...-.+|-||.. ...+.|...+...++.+++|+|.-+.
T Consensus 40 ~~a~~i~~~~~~~~~~VgVf~~--~~~~~i~~~~~~~~~d~vQLHG~e~~ 87 (207)
T PRK13958 40 TQIKKLASAVPNHIDKVCVVVN--PDLTTIEHILSNTSINTIQLHGTESI 87 (207)
T ss_pred HHHHHHHHhCCCCCCEEEEEeC--CCHHHHHHHHHhCCCCEEEECCCCCH
Confidence 3334444443322357989854 47788888888999999999998653
No 166
>PF05971 Methyltransf_10: Protein of unknown function (DUF890); InterPro: IPR010286 This family consists of several conserved hypothetical proteins from both eukaryotes and prokaryotes. The function of members of this family are unknown but are predicted to be SAM-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2H00_A.
Probab=37.20 E-value=79 Score=26.32 Aligned_cols=54 Identities=15% Similarity=0.244 Sum_probs=44.9
Q ss_pred CchhhhccccHHHHHHHHhHHHhCCCeEEEEechh---hHHHHHHHHHHhcCCeEEE
Q psy2047 170 PDDLVVESGKLKKLDEILPDLKKNGHRVLIFSQFI---FVLDILGHYMDIRGWRHLR 223 (233)
Q Consensus 170 ~~~~~~~s~Kl~~l~~lL~~~~~~~~KvlIFSq~~---~~Ld~l~~~l~~~gi~~~r 223 (233)
..+++...|=+.++.++|++...-+++|..||.-+ +.|.-|...|++.|+.-++
T Consensus 223 ~~El~~~GGEv~FV~rMI~ES~~~~~~v~WfTsmvgKkssL~~l~~~L~~~~~~~~~ 279 (299)
T PF05971_consen 223 SNELWCEGGEVAFVKRMIKESLQLKDQVRWFTSMVGKKSSLKPLKKELKKLGATNYK 279 (299)
T ss_dssp TTTTHHHHTHHHHHHHHHHHHHHHGGGEEEEEEEESSGGGHHHHHHHHHHTT-SEEE
T ss_pred cceEEcCCccHHHHHHHHHHHHHhCCCcEEEeecccCcccHHHHHHHHHhcCCceEE
Confidence 45788889999999999999887788999999876 6888999999998876443
No 167
>KOG0338|consensus
Probab=36.89 E-value=31 Score=31.00 Aligned_cols=53 Identities=15% Similarity=0.194 Sum_probs=43.5
Q ss_pred cHHHHHHHHhHHHhCCCeEEEEechhhHHHHHHHHHHhcCCeEEEeeCCcccCCC
Q psy2047 179 KLKKLDEILPDLKKNGHRVLIFSQFIFVLDILGHYMDIRGWRHLRLDGATQVSSR 233 (233)
Q Consensus 179 Kl~~l~~lL~~~~~~~~KvlIFSq~~~~Ld~l~~~l~~~gi~~~rldG~~~~~~R 233 (233)
+=.+|..++.... ...++||.+-...-+-+...|--.|+..--|+|+.++.+|
T Consensus 413 Rea~l~~l~~rtf--~~~~ivFv~tKk~AHRl~IllGLlgl~agElHGsLtQ~QR 465 (691)
T KOG0338|consen 413 REAMLASLITRTF--QDRTIVFVRTKKQAHRLRILLGLLGLKAGELHGSLTQEQR 465 (691)
T ss_pred cHHHHHHHHHHhc--ccceEEEEehHHHHHHHHHHHHHhhchhhhhcccccHHHH
Confidence 4445556665543 4589999999999999999999999999999999998876
No 168
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=35.68 E-value=1.1e+02 Score=27.45 Aligned_cols=26 Identities=19% Similarity=0.187 Sum_probs=20.7
Q ss_pred HHHHHHHHHhc--CCeEEEeeCCcccCC
Q psy2047 207 LDILGHYMDIR--GWRHLRLDGATQVSS 232 (233)
Q Consensus 207 Ld~l~~~l~~~--gi~~~rldG~~~~~~ 232 (233)
.+.++..|.+. +.++.++||+++..+
T Consensus 271 te~~~e~l~~~fp~~~v~~~d~d~~~~~ 298 (505)
T TIGR00595 271 TEQVEEELAKLFPGARIARIDSDTTSRK 298 (505)
T ss_pred HHHHHHHHHhhCCCCcEEEEecccccCc
Confidence 57778888776 889999999987653
No 169
>PRK04322 peptidyl-tRNA hydrolase; Provisional
Probab=35.43 E-value=1.5e+02 Score=20.62 Aligned_cols=40 Identities=18% Similarity=0.090 Sum_probs=31.5
Q ss_pred HHHhHHHhCCC-eEEEEechhhHHHHHHHHHHhcCCeEEEe
Q psy2047 185 EILPDLKKNGH-RVLIFSQFIFVLDILGHYMDIRGWRHLRL 224 (233)
Q Consensus 185 ~lL~~~~~~~~-KvlIFSq~~~~Ld~l~~~l~~~gi~~~rl 224 (233)
+.++.|...|. |+++-......|.-|...++..|+.+..+
T Consensus 37 ~~~~~W~~~G~~Kvvlkv~~~~el~~l~~~a~~~~l~~~~v 77 (113)
T PRK04322 37 EWLEEWLNEGQKKVVLKVNSEEELLELKEKAERLGLPTALI 77 (113)
T ss_pred HHHHHHHHCCCcEEEEeCCCHHHHHHHHHHHHHcCCCEEEE
Confidence 55677777776 77777787888888888889999987666
No 170
>PRK13700 conjugal transfer protein TraD; Provisional
Probab=34.63 E-value=45 Score=31.36 Aligned_cols=26 Identities=19% Similarity=0.437 Sum_probs=24.2
Q ss_pred cccHHHHHHHHhHHHhCCCeEEEEec
Q psy2047 177 SGKLKKLDEILPDLKKNGHRVLIFSQ 202 (233)
Q Consensus 177 s~Kl~~l~~lL~~~~~~~~KvlIFSq 202 (233)
|||-.++.++|..+.++|+|+|||=-
T Consensus 196 SGKS~~i~~LL~~ir~RGdrAIIyD~ 221 (732)
T PRK13700 196 AGKSEVIRRLANYARQRGDMVVIYDR 221 (732)
T ss_pred CCHHHHHHHHHHHHHHcCCeEEEEeC
Confidence 89999999999999999999999843
No 171
>cd01535 4RHOD_Repeat_4 Member of the Rhodanese Homology Domain superfamily, repeat 4. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 4th repeat which, in general, contains the putative catalytic Cys residue.
Probab=34.42 E-value=1.1e+02 Score=22.30 Aligned_cols=37 Identities=11% Similarity=0.084 Sum_probs=28.5
Q ss_pred CCCeEEEEechhhHHHHHHHHHHhcCC-eEEEeeCCcc
Q psy2047 193 NGHRVLIFSQFIFVLDILGHYMDIRGW-RHLRLDGATQ 229 (233)
Q Consensus 193 ~~~KvlIFSq~~~~Ld~l~~~l~~~gi-~~~rldG~~~ 229 (233)
.+..+||+|..-..-......|...|+ +...|+|++.
T Consensus 48 ~~~~vVv~c~~g~~a~~aa~~L~~~G~~~v~~L~GG~~ 85 (145)
T cd01535 48 AAERYVLTCGSSLLARFAAADLAALTVKPVFVLEGGTA 85 (145)
T ss_pred CCCCEEEEeCCChHHHHHHHHHHHcCCcCeEEecCcHH
Confidence 356899999886666666778888888 5888999864
No 172
>PRK01222 N-(5'-phosphoribosyl)anthranilate isomerase; Provisional
Probab=34.41 E-value=1.2e+02 Score=23.77 Aligned_cols=47 Identities=15% Similarity=0.114 Sum_probs=32.1
Q ss_pred HHHHHHhHHHhCCCeEEEEechhhHHHHHHHHHHhcCCeEEEeeCCccc
Q psy2047 182 KLDEILPDLKKNGHRVLIFSQFIFVLDILGHYMDIRGWRHLRLDGATQV 230 (233)
Q Consensus 182 ~l~~lL~~~~~~~~KvlIFSq~~~~Ld~l~~~l~~~gi~~~rldG~~~~ 230 (233)
...++...+...-.+|-||.. ...+.+...++..++.+++|+|..+.
T Consensus 43 ~a~~i~~~~~~~i~~VgVf~~--~~~~~i~~~~~~~~~d~vQLHg~e~~ 89 (210)
T PRK01222 43 QAAELAAALPPFVKVVGVFVN--ASDEEIDEIVETVPLDLLQLHGDETP 89 (210)
T ss_pred HHHHHHHhCCCCCCEEEEEeC--CCHHHHHHHHHhcCCCEEEECCCCCH
Confidence 334444443222458888854 36777888888899999999998653
No 173
>cd01448 TST_Repeat_1 Thiosulfate sulfurtransferase (TST), N-terminal, inactive domain. TST contains 2 copies of the Rhodanese Homology Domain; this is the 1st repeat, which does not contain the catalytically active Cys residue. The role of the 1st repeat is uncertain, but it is believed to be involved in protein interaction.
Probab=34.41 E-value=62 Score=22.31 Aligned_cols=37 Identities=22% Similarity=0.185 Sum_probs=27.9
Q ss_pred CCCeEEEEechh-hHHHHHHHHHHhcCCe-EEEeeCCcc
Q psy2047 193 NGHRVLIFSQFI-FVLDILGHYMDIRGWR-HLRLDGATQ 229 (233)
Q Consensus 193 ~~~KvlIFSq~~-~~Ld~l~~~l~~~gi~-~~rldG~~~ 229 (233)
.+..+||||..- .........|...|++ ...++|++.
T Consensus 78 ~~~~vv~~c~~g~~~a~~~~~~l~~~G~~~v~~l~GG~~ 116 (122)
T cd01448 78 NDDTVVVYDDGGGFFAARAWWTLRYFGHENVRVLDGGLQ 116 (122)
T ss_pred CCCEEEEECCCCCccHHHHHHHHHHcCCCCEEEecCCHH
Confidence 356888888773 5566667788889987 778899874
No 174
>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=33.34 E-value=82 Score=25.30 Aligned_cols=44 Identities=30% Similarity=0.443 Sum_probs=33.4
Q ss_pred HHHHHHHHhHHHhCCCeEEEEechhhHHHHHHHHHHhcCCeEEEeeCCc
Q psy2047 180 LKKLDEILPDLKKNGHRVLIFSQFIFVLDILGHYMDIRGWRHLRLDGAT 228 (233)
Q Consensus 180 l~~l~~lL~~~~~~~~KvlIFSq~~~~Ld~l~~~l~~~gi~~~rldG~~ 228 (233)
++.+-+-+..+...+.=+||.|+|...|+++. ...-|+-.+|++
T Consensus 180 lk~V~~~i~~lr~~~~~~liITHy~rll~~i~-----pD~vhvl~~GrI 223 (251)
T COG0396 180 LKIVAEGINALREEGRGVLIITHYQRLLDYIK-----PDKVHVLYDGRI 223 (251)
T ss_pred HHHHHHHHHHHhcCCCeEEEEecHHHHHhhcC-----CCEEEEEECCEE
Confidence 45556677777778889999999999999975 445666667653
No 175
>cd01445 TST_Repeats Thiosulfate sulfurtransferases (TST) contain 2 copies of the Rhodanese Homology Domain. Only the second repeat contains the catalytically active Cys residue. The role of the 1st repeat is uncertain, but believed to be involved in protein interaction. This CD aligns the 1st and 2nd repeats.
Probab=33.19 E-value=1.1e+02 Score=21.89 Aligned_cols=48 Identities=10% Similarity=0.022 Sum_probs=30.1
Q ss_pred HHHHHHhHH-HhCCCeEEEEech---hhHHHHHHHHHHhcCCe-EEEeeCCcc
Q psy2047 182 KLDEILPDL-KKNGHRVLIFSQF---IFVLDILGHYMDIRGWR-HLRLDGATQ 229 (233)
Q Consensus 182 ~l~~lL~~~-~~~~~KvlIFSq~---~~~Ld~l~~~l~~~gi~-~~rldG~~~ 229 (233)
.+.+++..+ ...+.+||||+.. -..-..+-..|+..|++ ...+||+.+
T Consensus 82 ~~~~~~~~~GI~~~~~vVvY~~~~~~g~~A~r~~~~l~~~G~~~v~ildGG~~ 134 (138)
T cd01445 82 EFAAMFEAKGIDLDKHLIATDGDDLGGFTACHIALAARLCGHPDVAILDGGFF 134 (138)
T ss_pred HHHHHHHHcCCCCCCeEEEECCCCCcchHHHHHHHHHHHcCCCCeEEeCCCHH
Confidence 344445444 2345699999964 22334455677888887 668899864
No 176
>PRK05569 flavodoxin; Provisional
Probab=32.86 E-value=1.1e+02 Score=21.63 Aligned_cols=43 Identities=7% Similarity=0.182 Sum_probs=30.0
Q ss_pred cHHHHHHHHhHHHhCCCeEEEEech----hhHHHHHHHHHHhcCCeE
Q psy2047 179 KLKKLDEILPDLKKNGHRVLIFSQF----IFVLDILGHYMDIRGWRH 221 (233)
Q Consensus 179 Kl~~l~~lL~~~~~~~~KvlIFSq~----~~~Ld~l~~~l~~~gi~~ 221 (233)
-+..+++.+......+.++.+|+.+ ...++.+...|+..|+++
T Consensus 68 ~~~~~~~~l~~~~~~~K~v~~f~t~g~~~~~~~~~~~~~l~~~g~~~ 114 (141)
T PRK05569 68 EMAPFLDQFKLTPNENKKCILFGSYGWDNGEFMKLWKDRMKDYGFNV 114 (141)
T ss_pred HHHHHHHHhhccCcCCCEEEEEeCCCCCCCcHHHHHHHHHHHCCCeE
Confidence 4555555555444457899999885 246778888898888764
No 177
>TIGR02981 phageshock_pspE phage shock operon rhodanese PspE. Members of this very narrowly defined protein family are proteins active as rhodanese (EC 2.8.1.1) and found in the extended variants of the phage shock protein (psp operon) in Escherichia coli and a few closely related species. Note that the designation phage shock protein PspE has been applied, incorrectly, in many instances where the genome lacks the phage shock regulon entirely.
Probab=32.76 E-value=1.6e+02 Score=19.90 Aligned_cols=36 Identities=11% Similarity=0.101 Sum_probs=26.5
Q ss_pred CCeEEEEechhhHHHHHHHHHHhcCCeEEEeeCCcc
Q psy2047 194 GHRVLIFSQFIFVLDILGHYMDIRGWRHLRLDGATQ 229 (233)
Q Consensus 194 ~~KvlIFSq~~~~Ld~l~~~l~~~gi~~~rldG~~~ 229 (233)
+.+++|+|..-..-......|...|+.-+...|++.
T Consensus 58 ~~~vvlyC~~G~rS~~aa~~L~~~G~~~v~~~GG~~ 93 (101)
T TIGR02981 58 NDTVKLYCNAGRQSGMAKDILLDMGYTHAENAGGIK 93 (101)
T ss_pred CCeEEEEeCCCHHHHHHHHHHHHcCCCeEEecCCHH
Confidence 457888887765666667888899998666678764
No 178
>PF10490 CENP-F_C_Rb_bdg: Rb-binding domain of kinetochore protein Cenp-F/LEK1; InterPro: IPR018302 This entry represents the Rb protein-binding domain from the centromere protein Cenp-F. Cenp-F is a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, that is involved in chromosome segregation during mitosis and is essential for the full functioning of the mitotic checkpoint pathway [, ]. Cenp-F interacts with retinoblastoma protein (RB), CENP-E and BUBR1. This domain is at the very C terminus of the C-terminal coiled-coil region, and binds to the Rb family of tumour suppressors [].
Probab=32.16 E-value=11 Score=21.65 Aligned_cols=11 Identities=45% Similarity=0.815 Sum_probs=9.2
Q ss_pred hhhhhhhhcch
Q psy2047 32 IISPFMLRRLK 42 (233)
Q Consensus 32 ~l~~~~lRRtk 42 (233)
..+||+||||.
T Consensus 32 k~sPyilRRtt 42 (49)
T PF10490_consen 32 KTSPYILRRTT 42 (49)
T ss_pred CCCceEEEeec
Confidence 46899999986
No 179
>COG1435 Tdk Thymidine kinase [Nucleotide transport and metabolism]
Probab=32.00 E-value=67 Score=24.97 Aligned_cols=30 Identities=33% Similarity=0.351 Sum_probs=26.1
Q ss_pred ccccHHHHHHHHhHHHhCCCeEEEEechhh
Q psy2047 176 ESGKLKKLDEILPDLKKNGHRVLIFSQFIF 205 (233)
Q Consensus 176 ~s~Kl~~l~~lL~~~~~~~~KvlIFSq~~~ 205 (233)
.|||-..|++-++.....|.|++||..-..
T Consensus 14 ~SGKT~eLl~r~~~~~~~g~~v~vfkp~iD 43 (201)
T COG1435 14 FSGKTEELLRRARRYKEAGMKVLVFKPAID 43 (201)
T ss_pred cCcchHHHHHHHHHHHHcCCeEEEEecccc
Confidence 399999999999999999999999976554
No 180
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=31.85 E-value=1.1e+02 Score=28.58 Aligned_cols=56 Identities=16% Similarity=0.120 Sum_probs=39.4
Q ss_pred ccccHHHHHHHHhHHHhCCCeEEEEechhhHHHH----HHHHHHhcCCeEEEeeCCcccC
Q psy2047 176 ESGKLKKLDEILPDLKKNGHRVLIFSQFIFVLDI----LGHYMDIRGWRHLRLDGATQVS 231 (233)
Q Consensus 176 ~s~Kl~~l~~lL~~~~~~~~KvlIFSq~~~~Ld~----l~~~l~~~gi~~~rldG~~~~~ 231 (233)
.|||-.+..-.+-....+|.+++|.+.-.....- +..++...|++...++|+++.+
T Consensus 292 GSGKT~va~~~il~~~~~g~q~lilaPT~~LA~Q~~~~l~~l~~~~~i~v~ll~G~~~~~ 351 (681)
T PRK10917 292 GSGKTVVAALAALAAIEAGYQAALMAPTEILAEQHYENLKKLLEPLGIRVALLTGSLKGK 351 (681)
T ss_pred CCcHHHHHHHHHHHHHHcCCeEEEEeccHHHHHHHHHHHHHHHhhcCcEEEEEcCCCCHH
Confidence 4889876655444444678899999987765543 4444555689999999998854
No 181
>PRK02362 ski2-like helicase; Provisional
Probab=31.61 E-value=73 Score=30.09 Aligned_cols=53 Identities=9% Similarity=-0.038 Sum_probs=0.0
Q ss_pred HHHHHHHhHHHhCCCeEEEEechhhHHHHHHHHHHhcCC------------------------------------eEEEe
Q psy2047 181 KKLDEILPDLKKNGHRVLIFSQFIFVLDILGHYMDIRGW------------------------------------RHLRL 224 (233)
Q Consensus 181 ~~l~~lL~~~~~~~~KvlIFSq~~~~Ld~l~~~l~~~gi------------------------------------~~~rl 224 (233)
.....++......+.++|||+........+...|..... .....
T Consensus 230 ~~~~~~~~~~~~~~~~~LVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~L~~~l~~gva~h 309 (737)
T PRK02362 230 DDTLNLVLDTLEEGGQCLVFVSSRRNAEGFAKRAASALKKTLTAAERAELAELAEEIREVSDTETSKDLADCVAKGAAFH 309 (737)
T ss_pred hHHHHHHHHHHHcCCCeEEEEeCHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhccCccccHHHHHHHHhCEEee
Q ss_pred eCCcccCCC
Q psy2047 225 DGATQVSSR 233 (233)
Q Consensus 225 dG~~~~~~R 233 (233)
+|+++..+|
T Consensus 310 Hagl~~~eR 318 (737)
T PRK02362 310 HAGLSREHR 318 (737)
T ss_pred cCCCCHHHH
No 182
>PF09456 RcsC: RcsC Alpha-Beta-Loop (ABL); InterPro: IPR019017 This domain is found in the C terminus of the signal transduction response regulator (phospho-relay) kinase RcsC, between the ATP-binding region (IPR003594 from INTERPRO) and the receiver region (IPR001789 from INTERPRO). This domain forms a discrete alpha/beta/loop structure []. The Rcs signalling pathway controls a variety of physiological functions like capsule synthesis, cell division or motility in prokaryotes. The Rcs regulation cascade, involving a multi-step phosphorelay between the two membrane-bound hybrid sensor kinases RcsC and RcsD and the global regulator RcsB, is, up to now, one of the most complicated regulatory systems in bacteria []. ; GO: 0004673 protein histidine kinase activity, 0004871 signal transducer activity, 0005524 ATP binding, 0000160 two-component signal transduction system (phosphorelay), 0006355 regulation of transcription, DNA-dependent, 0018106 peptidyl-histidine phosphorylation, 0005886 plasma membrane, 0016021 integral to membrane; PDB: 2AYY_A 2AYX_A.
Probab=31.54 E-value=54 Score=22.06 Aligned_cols=28 Identities=14% Similarity=0.306 Sum_probs=19.3
Q ss_pred hhhHHHHHHHHHHhcCCeEEEeeCCccc
Q psy2047 203 FIFVLDILGHYMDIRGWRHLRLDGATQV 230 (233)
Q Consensus 203 ~~~~Ld~l~~~l~~~gi~~~rldG~~~~ 230 (233)
...+-.+|+.+|...|+.+.+..|..+.
T Consensus 8 Na~Le~yL~~lL~~~G~~v~~y~~q~~~ 35 (92)
T PF09456_consen 8 NAYLESYLQRLLSYHGFQVQRYEGQQPD 35 (92)
T ss_dssp -HHHHHHHHHHHCTTTEEEEE-SS----
T ss_pred hHHHHHHHHHHHHHCCcEEEEecCCCCC
Confidence 3456788999999999999999998653
No 183
>COG1205 Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only]
Probab=31.24 E-value=1.6e+02 Score=28.55 Aligned_cols=55 Identities=16% Similarity=0.143 Sum_probs=41.8
Q ss_pred ccHHHHHHHHhHHHhCCCeEEEEechhhHHHHHH----HHHHhcC----CeEEEeeCCcccCC
Q psy2047 178 GKLKKLDEILPDLKKNGHRVLIFSQFIFVLDILG----HYMDIRG----WRHLRLDGATQVSS 232 (233)
Q Consensus 178 ~Kl~~l~~lL~~~~~~~~KvlIFSq~~~~Ld~l~----~~l~~~g----i~~~rldG~~~~~~ 232 (233)
++...+..++..+..++-|.|+|+-+......+. ..+...| .......|++...+
T Consensus 290 s~~~~~~~~~~~~~~~~~~tL~F~~sr~~~e~~~~~~~~~~~~~~~~l~~~v~~~~~~~~~~e 352 (851)
T COG1205 290 SALAELATLAALLVRNGIQTLVFFRSRKQVELLYLSPRRRLVREGGKLLDAVSTYRAGLHREE 352 (851)
T ss_pred chHHHHHHHHHHHHHcCceEEEEEehhhhhhhhhhchhHHHhhcchhhhhheeeccccCCHHH
Confidence 7888888888888889999999999999999996 3444444 45566666665543
No 184
>COG1358 RPL8A Ribosomal protein HS6-type (S12/L30/L7a) [Translation, ribosomal structure and biogenesis]
Probab=30.42 E-value=2e+02 Score=20.27 Aligned_cols=50 Identities=14% Similarity=0.230 Sum_probs=37.1
Q ss_pred cccHHHHHHHHhHHHhCCC-eEEEEechhh---HHHHHHHHHHhcCCeEEEeeC
Q psy2047 177 SGKLKKLDEILPDLKKNGH-RVLIFSQFIF---VLDILGHYMDIRGWRHLRLDG 226 (233)
Q Consensus 177 s~Kl~~l~~lL~~~~~~~~-KvlIFSq~~~---~Ld~l~~~l~~~gi~~~rldG 226 (233)
.+|+..=.+...+...+|. +.||.+.-++ +...|...|...|++|+.+..
T Consensus 25 ~~ki~~G~~e~~Kai~~g~a~LVviA~Dv~P~~~~~~l~~lc~~~~vpyv~V~s 78 (116)
T COG1358 25 AGKLKKGTNEVTKAIERGKAKLVVIAEDVSPEELVKHLPALCEEKNVPYVYVGS 78 (116)
T ss_pred cCCchhhHHHHHHHHHcCCCcEEEEecCCCHHHHHHHHHHHHHhcCCCEEEeCC
Confidence 5566666666655555555 9999999987 666777888899999987753
No 185
>cd01443 Cdc25_Acr2p Cdc25 enzymes are members of the Rhodanese Homology Domain (RHOD) superfamily. Also included in this CD are eukaryotic arsenate resistance proteins such as Saccharomyces cerevisiae Acr2p and similar proteins. Cdc25 phosphatases activate the cell division kinases throughout the cell cycle progression. Cdc25 phosphatases dephosphorylate phosphotyrosine and phosphothreonine residues, in order to activate their Cdk/cyclin substrates. The Cdc25 and Acr2p RHOD domains have the signature motif (H/YCxxxxxR).
Probab=30.37 E-value=1.8e+02 Score=19.75 Aligned_cols=36 Identities=11% Similarity=0.147 Sum_probs=24.6
Q ss_pred CCeEEEEechh-----hHHHHHHHHHHhcCC---eEEEeeCCcc
Q psy2047 194 GHRVLIFSQFI-----FVLDILGHYMDIRGW---RHLRLDGATQ 229 (233)
Q Consensus 194 ~~KvlIFSq~~-----~~Ld~l~~~l~~~gi---~~~rldG~~~ 229 (233)
..++|++|+.. .....+...+.+.|+ +...++|++.
T Consensus 66 ~~~iv~~C~~~g~rs~~a~~~l~~~l~~~G~~~~~v~~l~GG~~ 109 (113)
T cd01443 66 VKLAIFYCGSSQGRGPRAARWFADYLRKVGESLPKSYILTGGIK 109 (113)
T ss_pred CCEEEEECCCCCcccHHHHHHHHHHHhccCCCCCeEEEECChhh
Confidence 35778878642 345577777777887 5667899874
No 186
>TIGR00580 mfd transcription-repair coupling factor (mfd). All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families.
Probab=30.20 E-value=1.4e+02 Score=29.18 Aligned_cols=48 Identities=13% Similarity=0.084 Sum_probs=40.9
Q ss_pred cccHHHHHHHHhHHHhCCCeEEEEechhhHHHHHHHHHHhcCCeEEEe
Q psy2047 177 SGKLKKLDEILPDLKKNGHRVLIFSQFIFVLDILGHYMDIRGWRHLRL 224 (233)
Q Consensus 177 s~Kl~~l~~lL~~~~~~~~KvlIFSq~~~~Ld~l~~~l~~~gi~~~rl 224 (233)
.+.+..+.+-+.++...|.|++|++....-.+.+...|...|+.+...
T Consensus 219 ~~~~~~~~~~~~~~~~~~~~vii~~~s~~~~~~l~~~l~~~~~~~~~~ 266 (926)
T TIGR00580 219 FGEILAFKEELFRWLKAGFKITVAAESESQAERLKSLLAEHDIAAQVI 266 (926)
T ss_pred ccCHHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHHCCCCceec
Confidence 567778888888888888999999999999999999999998865443
No 187
>COG1201 Lhr Lhr-like helicases [General function prediction only]
Probab=30.15 E-value=1.1e+02 Score=29.28 Aligned_cols=53 Identities=21% Similarity=0.114 Sum_probs=42.1
Q ss_pred HHHHHHHhHHHhCCCeEEEEechhhHHHHHHHHHHhcC-CeEEEeeCCcccCCC
Q psy2047 181 KKLDEILPDLKKNGHRVLIFSQFIFVLDILGHYMDIRG-WRHLRLDGATQVSSR 233 (233)
Q Consensus 181 ~~l~~lL~~~~~~~~KvlIFSq~~~~Ld~l~~~l~~~g-i~~~rldG~~~~~~R 233 (233)
..+.+.|.++.+....+|||++-.++-+.+...|++.+ .....=||+.|..+|
T Consensus 240 ~~~~~~i~~~v~~~~ttLIF~NTR~~aE~l~~~L~~~~~~~i~~HHgSlSre~R 293 (814)
T COG1201 240 AALYERIAELVKKHRTTLIFTNTRSGAERLAFRLKKLGPDIIEVHHGSLSRELR 293 (814)
T ss_pred HHHHHHHHHHHhhcCcEEEEEeChHHHHHHHHHHHHhcCCceeeecccccHHHH
Confidence 44556666665555589999999999999999999987 777777899887655
No 188
>cd08181 PPD-like 1,3-propanediol dehydrogenase-like (PPD). 1,3-propanediol dehydrogenase-like (PPD). This family is a member of the iron-containing alcohol dehydrogenase superfamily, and exhibits a dehydroquinate synthase-like fold. Protein sequence similarity search and other biochemical evidences suggest that they are close to the iron-containing 1,3-propanediol dehydrogenase (EC 1.1.1.202). 1,3-propanediol dehydrogenase catalyzes the oxidation of propane-1,3-diol to 3-hydroxypropanal with the simultaneous reduction of NADP+ to NADPH. The protein structure of Thermotoga maritima TM0920 gene contains one NADP+ and one iron ion.
Probab=30.00 E-value=1.9e+02 Score=24.54 Aligned_cols=50 Identities=24% Similarity=0.203 Sum_probs=33.9
Q ss_pred cccHHHHHHHHhHHHhCCCeEEEEech---h--hHHHHHHHHHHhcCCeEEEeeCCcc
Q psy2047 177 SGKLKKLDEILPDLKKNGHRVLIFSQF---I--FVLDILGHYMDIRGWRHLRLDGATQ 229 (233)
Q Consensus 177 s~Kl~~l~~lL~~~~~~~~KvlIFSq~---~--~~Ld~l~~~l~~~gi~~~rldG~~~ 229 (233)
.+.+..+-+.++.+ |.|++|.+.- . ..++-+...|+..|+.+..++|-.+
T Consensus 11 ~g~l~~l~~~~~~~---g~r~lvVt~~~~~~~~g~~~~v~~~L~~~g~~~~~~~~v~~ 65 (357)
T cd08181 11 ENCVEKHGEELAAL---GKRALIVTGKSSAKKNGSLDDVTKALEELGIEYEIFDEVEE 65 (357)
T ss_pred CCHHHHHHHHHHHc---CCEEEEEeCCchHhhcCcHHHHHHHHHHcCCeEEEeCCCCC
Confidence 45555555555543 5788877642 2 2568888889999999988887544
No 189
>PRK01172 ski2-like helicase; Provisional
Probab=29.46 E-value=92 Score=29.04 Aligned_cols=34 Identities=12% Similarity=0.209 Sum_probs=24.9
Q ss_pred HHHHHhHHHhCCCeEEEEechhhHHHHHHHHHHh
Q psy2047 183 LDEILPDLKKNGHRVLIFSQFIFVLDILGHYMDI 216 (233)
Q Consensus 183 l~~lL~~~~~~~~KvlIFSq~~~~Ld~l~~~l~~ 216 (233)
+..++.+....+.++|||+........+...|..
T Consensus 225 ~~~~i~~~~~~~~~vLVF~~sr~~~~~~a~~L~~ 258 (674)
T PRK01172 225 INSLIKETVNDGGQVLVFVSSRKNAEDYAEMLIQ 258 (674)
T ss_pred HHHHHHHHHhCCCcEEEEeccHHHHHHHHHHHHH
Confidence 3455666556788999999998877777766644
No 190
>PF08538 DUF1749: Protein of unknown function (DUF1749); InterPro: IPR013744 This is a plant and fungal family of unknown function. This family contains many hypothetical proteins. ; PDB: 2Q0X_B.
Probab=29.45 E-value=1.4e+02 Score=24.90 Aligned_cols=40 Identities=15% Similarity=0.145 Sum_probs=27.1
Q ss_pred ccHHHHHHHHhHHH---hCCCeEEEEechhhHHHHHHHHHHhc
Q psy2047 178 GKLKKLDEILPDLK---KNGHRVLIFSQFIFVLDILGHYMDIR 217 (233)
Q Consensus 178 ~Kl~~l~~lL~~~~---~~~~KvlIFSq~~~~Ld~l~~~l~~~ 217 (233)
.=+..+++.|+... ....|||++-++|...|+++..-...
T Consensus 88 ~eI~~~v~ylr~~~~g~~~~~kIVLmGHSTGcQdvl~Yl~~~~ 130 (303)
T PF08538_consen 88 EEIAQLVEYLRSEKGGHFGREKIVLMGHSTGCQDVLHYLSSPN 130 (303)
T ss_dssp HHHHHHHHHHHHHS------S-EEEEEECCHHHHHHHHHHH-T
T ss_pred HHHHHHHHHHHHhhccccCCccEEEEecCCCcHHHHHHHhccC
Confidence 34566666666653 13469999999999999998887554
No 191
>KOG1805|consensus
Probab=29.39 E-value=1.4e+02 Score=29.26 Aligned_cols=50 Identities=24% Similarity=0.191 Sum_probs=44.8
Q ss_pred ccccHHHHHHHHhHHHhCCCeEEEEechhhHHHHHHHHHHhcCCeEEEee
Q psy2047 176 ESGKLKKLDEILPDLKKNGHRVLIFSQFIFVLDILGHYMDIRGWRHLRLD 225 (233)
Q Consensus 176 ~s~Kl~~l~~lL~~~~~~~~KvlIFSq~~~~Ld~l~~~l~~~gi~~~rld 225 (233)
..||-..+..+++-+...|.|||+-|.=-+-+|=|=..|...||.++||-
T Consensus 695 GTGKTTtI~~LIkiL~~~gkkVLLtsyThsAVDNILiKL~~~~i~~lRLG 744 (1100)
T KOG1805|consen 695 GTGKTTTISLLIKILVALGKKVLLTSYTHSAVDNILIKLKGFGIYILRLG 744 (1100)
T ss_pred CCCchhhHHHHHHHHHHcCCeEEEEehhhHHHHHHHHHHhccCcceeecC
Confidence 37999999999998888999999999888999999999999999999984
No 192
>cd08186 Fe-ADH8 Iron-containing alcohol dehydrogenase. Type III Iron-containing alcohol dehydrogenases (ADH). Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. The ADH of hyperthermophilic archaeon Thermococcus hydrothermalis oxidizes a series of primary aliphatic and aromatic alcohols preferentially from C2 to C8 but is also active towards methanol and glycerol and stereospecific for monoterpenes. It was suggested that the type III ADHs in microorganisms are involved in acetaldehyde detoxication rather than in alcohol turnover.
Probab=29.19 E-value=2.1e+02 Score=24.62 Aligned_cols=52 Identities=29% Similarity=0.395 Sum_probs=34.1
Q ss_pred ccHHHHHHHHhHHHhCC-CeEEEEec-h----hhHHHHHHHHHHhcCCeEEEeeCCcc
Q psy2047 178 GKLKKLDEILPDLKKNG-HRVLIFSQ-F----IFVLDILGHYMDIRGWRHLRLDGATQ 229 (233)
Q Consensus 178 ~Kl~~l~~lL~~~~~~~-~KvlIFSq-~----~~~Ld~l~~~l~~~gi~~~rldG~~~ 229 (233)
+-+..+-+.++.+...| .|++|++. . ...++.+...|+..|+.+..++|-.+
T Consensus 9 g~~~~l~~~l~~~~~~g~kr~livtd~~~~~~~g~~~~v~~~L~~~gi~~~~f~~v~~ 66 (383)
T cd08186 9 GAIEKIGEILKDLKSKGISKVLLVTGKSAYKKSGAWDKVEPALDEHGIEYVLYNKVTP 66 (383)
T ss_pred CHHHHHHHHHHHhcccCCCEEEEEcCccHHhhcChHHHHHHHHHHcCCeEEEeCCCCC
Confidence 44555556665543223 57887775 2 23468888888888998888886654
No 193
>PRK05299 rpsB 30S ribosomal protein S2; Provisional
Probab=29.03 E-value=2.4e+02 Score=22.94 Aligned_cols=52 Identities=15% Similarity=0.182 Sum_probs=40.8
Q ss_pred cccHHHHHHHHhHHHhCCCeEEEEechhhHHHHHHHHHHhcCCeEE--EeeCCc
Q psy2047 177 SGKLKKLDEILPDLKKNGHRVLIFSQFIFVLDILGHYMDIRGWRHL--RLDGAT 228 (233)
Q Consensus 177 s~Kl~~l~~lL~~~~~~~~KvlIFSq~~~~Ld~l~~~l~~~gi~~~--rldG~~ 228 (233)
-..+.....+|..+...+.++|+.+.-...-++++.....-|-.|+ |.-|+|
T Consensus 47 ~~~L~~A~~~i~~~~~~~g~iLfVgTk~~~~~~V~~~A~~~~~~yv~~rWlgG~ 100 (258)
T PRK05299 47 VPMLDEAYNFVRDVAANGGKILFVGTKKQAQEAIAEEAERCGMPYVNHRWLGGM 100 (258)
T ss_pred HHHHHHHHHHHHHHHhCCCEEEEEECcHHHHHHHHHHHHHhCCeeeCCeecCee
Confidence 4566667777888777889999999999999999999888887765 555553
No 194
>PRK14701 reverse gyrase; Provisional
Probab=28.87 E-value=92 Score=32.48 Aligned_cols=44 Identities=20% Similarity=0.285 Sum_probs=35.3
Q ss_pred HHHHHHHhHHHhCCCeEEEEechhhH---HHHHHHHHHhcCCeEEEeeCC
Q psy2047 181 KKLDEILPDLKKNGHRVLIFSQFIFV---LDILGHYMDIRGWRHLRLDGA 227 (233)
Q Consensus 181 ~~l~~lL~~~~~~~~KvlIFSq~~~~---Ld~l~~~l~~~gi~~~rldG~ 227 (233)
..+.++|+.. +...|||++.... .+.|...|...|++...++|+
T Consensus 320 ~~L~~ll~~~---g~~gIVF~~t~~~~e~ae~la~~L~~~Gi~a~~~h~~ 366 (1638)
T PRK14701 320 EHVRELLKKL---GKGGLIFVPIDEGAEKAEEIEKYLLEDGFKIELVSAK 366 (1638)
T ss_pred HHHHHHHHhC---CCCeEEEEeccccchHHHHHHHHHHHCCCeEEEecch
Confidence 4566666553 6789999987664 589999999999999999986
No 195
>COG0626 MetC Cystathionine beta-lyases/cystathionine gamma-synthases [Amino acid transport and metabolism]
Probab=28.79 E-value=1.6e+02 Score=25.63 Aligned_cols=55 Identities=16% Similarity=0.155 Sum_probs=46.0
Q ss_pred hccccHHHHHHHHhHHHhCCCeEEEEec-hhhHHHHHHHHHHhcCCeEEEeeCCcc
Q psy2047 175 VESGKLKKLDEILPDLKKNGHRVLIFSQ-FIFVLDILGHYMDIRGWRHLRLDGATQ 229 (233)
Q Consensus 175 ~~s~Kl~~l~~lL~~~~~~~~KvlIFSq-~~~~Ld~l~~~l~~~gi~~~rldG~~~ 229 (233)
..|+-|.++...+-.+.+.|+++|+... |-.+..+++..+++.|+.+.-+|.+..
T Consensus 83 afsSGmaAI~~~~l~ll~~GD~vl~~~~~YG~t~~~~~~~l~~~gi~~~~~d~~~~ 138 (396)
T COG0626 83 AFSSGMAAISTALLALLKAGDHVLLPDDLYGGTYRLFEKILQKFGVEVTFVDPGDD 138 (396)
T ss_pred EecCcHHHHHHHHHHhcCCCCEEEecCCccchHHHHHHHHHHhcCeEEEEECCCCh
Confidence 3478888888877777777898888877 999999999999999999887876654
No 196
>COG5610 Predicted hydrolase (HAD superfamily) [General function prediction only]
Probab=28.76 E-value=93 Score=27.65 Aligned_cols=39 Identities=26% Similarity=0.349 Sum_probs=33.6
Q ss_pred HHHHHHhHHHhCCCeEEEEechhhHHHHHHHHHHhcCCe
Q psy2047 182 KLDEILPDLKKNGHRVLIFSQFIFVLDILGHYMDIRGWR 220 (233)
Q Consensus 182 ~l~~lL~~~~~~~~KvlIFSq~~~~Ld~l~~~l~~~gi~ 220 (233)
.-+++.++..+++.|||+.|..--...+|+..|...|..
T Consensus 103 ~~~eL~e~ai~n~krVIlISDMYlps~Il~~~L~s~g~d 141 (635)
T COG5610 103 KNIELVEEAIKNEKRVILISDMYLPSSILRTFLNSFGPD 141 (635)
T ss_pred cchHHHHHHHhCCCeEEEEecccCcHHHHHHHHHhcCCC
Confidence 345677888889999999999999999999999988764
No 197
>cd05017 SIS_PGI_PMI_1 The members of this protein family contain the SIS (Sugar ISomerase) domain and have both the phosphoglucose isomerase (PGI) and the phosphomannose isomerase (PMI) functions. These functions catalyze the reversible reactions of glucose 6-phosphate to fructose 6-phosphate, and mannose 6-phosphate to fructose 6-phosphate, respectively at an equal rate. This protein contains two SIS domains. This alignment is based on the first SIS domain.
Probab=28.66 E-value=1.7e+02 Score=20.14 Aligned_cols=46 Identities=13% Similarity=0.075 Sum_probs=34.6
Q ss_pred hccccHHHHHHHHhHHHhCCCeEEEEechhhHHHHHHHHHHhcCCeEEEe
Q psy2047 175 VESGKLKKLDEILPDLKKNGHRVLIFSQFIFVLDILGHYMDIRGWRHLRL 224 (233)
Q Consensus 175 ~~s~Kl~~l~~lL~~~~~~~~KvlIFSq~~~~Ld~l~~~l~~~gi~~~rl 224 (233)
..|+.-.-+++.++..++.|-++|.++.... |..+..+.|...+.+
T Consensus 51 S~SG~t~e~i~~~~~a~~~g~~iI~IT~~~~----l~~~~~~~~~~~~~~ 96 (119)
T cd05017 51 SYSGNTEETLSAVEQAKERGAKIVAITSGGK----LLEMAREHGVPVIII 96 (119)
T ss_pred ECCCCCHHHHHHHHHHHHCCCEEEEEeCCch----HHHHHHHcCCcEEEC
Confidence 4478888888888888888999999997653 666677667665543
No 198
>TIGR02263 benz_CoA_red_C benzoyl-CoA reductase, subunit C. This model describes C subunit of benzoyl-CoA reductase, a 4-subunit enzyme. Many aromatic compounds are metabolized by way of benzoyl-CoA. This enzyme acts under anaerobic conditions.
Probab=28.57 E-value=1.1e+02 Score=26.29 Aligned_cols=48 Identities=17% Similarity=0.133 Sum_probs=32.5
Q ss_pred cHHHHHHHHhHHHhCCCeEEEEech-----hhHHHHHHHHHHhcCCeEEEeeCCc
Q psy2047 179 KLKKLDEILPDLKKNGHRVLIFSQF-----IFVLDILGHYMDIRGWRHLRLDGAT 228 (233)
Q Consensus 179 Kl~~l~~lL~~~~~~~~KvlIFSq~-----~~~Ld~l~~~l~~~gi~~~rldG~~ 228 (233)
++..+.+++++....| ||.|+.+ ..-.-.|...|++.||+++.||-+.
T Consensus 309 R~~~i~~lvke~~aDG--VI~~~~~~C~~~~~e~~~lk~~l~e~GIP~L~id~~~ 361 (380)
T TIGR02263 309 KGKYLLDQVRKNAAEG--VIFAAPSFCDPALLERPMLAARCKEHGIPQIAFKYAE 361 (380)
T ss_pred HHHHHHHHHHHhCCCE--EEEhHhhcCChhhhhHHHHHHHHHHCCCCEEEEEecC
Confidence 6777777777765443 4444332 2345567888899999999997553
No 199
>cd01427 HAD_like Haloacid dehalogenase-like hydrolases. The haloacid dehalogenase-like (HAD) superfamily includes L-2-haloacid dehalogenase, epoxide hydrolase, phosphoserine phosphatase, phosphomannomutase, phosphoglycolate phosphatase, P-type ATPase, and many others, all of which use a nucleophilic aspartate in their phosphoryl transfer reaction. All members possess a highly conserved alpha/beta core domain, and many also possess a small cap domain, the fold and function of which is variable. Members of this superfamily are sometimes referred to as belonging to the DDDD superfamily of phosphohydrolases.
Probab=28.44 E-value=1.5e+02 Score=19.93 Aligned_cols=35 Identities=17% Similarity=0.238 Sum_probs=24.7
Q ss_pred HHHHHhHHHhCCCeEEEEechhhHHHHHHHHHHhcCC
Q psy2047 183 LDEILPDLKKNGHRVLIFSQFIFVLDILGHYMDIRGW 219 (233)
Q Consensus 183 l~~lL~~~~~~~~KvlIFSq~~~~Ld~l~~~l~~~gi 219 (233)
+.++|+.+..+|.+++|+|... ...++..+...|+
T Consensus 29 ~~~~l~~l~~~g~~i~ivS~~~--~~~~~~~~~~~~~ 63 (139)
T cd01427 29 VKEALKELKEKGIKLALATNKS--RREVLELLEELGL 63 (139)
T ss_pred HHHHHHHHHHCCCeEEEEeCch--HHHHHHHHHHcCC
Confidence 3466677777788999999755 6666666666665
No 200
>TIGR02260 benz_CoA_red_B benzoyl-CoA reductase, bcr type, subunit B. This model describes B, or beta, subunit of the bcr type of benzoyl-CoA reductase, a 4-subunit enzyme. Many aromatic compounds are metabolized by way of benzoyl-CoA.
Probab=28.43 E-value=1.4e+02 Score=26.01 Aligned_cols=50 Identities=12% Similarity=0.091 Sum_probs=32.6
Q ss_pred cHHHHHHHHhHHHhCCCeEEEEech-----hhHHHHHHHHHHh-cCCeEEEeeCCccc
Q psy2047 179 KLKKLDEILPDLKKNGHRVLIFSQF-----IFVLDILGHYMDI-RGWRHLRLDGATQV 230 (233)
Q Consensus 179 Kl~~l~~lL~~~~~~~~KvlIFSq~-----~~~Ld~l~~~l~~-~gi~~~rldG~~~~ 230 (233)
++..+.+++++....| ||.++.+ ....-.+...+.+ .||+++.|+|+.+.
T Consensus 338 R~~~l~~l~ke~~aDG--VI~~~~~~C~~~~~e~~~~~~~l~e~~GIP~L~iE~D~~d 393 (413)
T TIGR02260 338 RVDLLEKYINEYEADG--LLINSIKSCNSFSAGQLLMMREIEKRTGKPAAFIETDLVD 393 (413)
T ss_pred HHHHHHHHHHHhCCCE--EEEeccCCCCcchhhhHHHHHHHHHHcCCCEEEEEcCCCC
Confidence 6777888887765444 4444432 2224445556654 79999999998764
No 201
>PF10412 TrwB_AAD_bind: Type IV secretion-system coupling protein DNA-binding domain; InterPro: IPR019476 The plasmid conjugative coupling protein TraD (also known as TrwB) is a basic integral inner-membrane nucleoside-triphosphate-binding protein. It is the structural prototype for the type IV secretion system coupling proteins, a family of proteins essential for macromolecular transport between cells []. This protein forms hexamers from six structurally very similar protomers []. This hexamer contains a central channel running from the cytosolic pole (formed by the all-alpha domains) to the membrane pole ending at the transmembrane pore shaped by 12 transmembrane helices, rendering an overall mushroom-like structure. The TrwB all-alpha domain appears to be the DNA-binding domain of the structure. ; PDB: 1E9S_D 1E9R_F 1GKI_B 1GL7_G 1GL6_A.
Probab=28.27 E-value=69 Score=27.60 Aligned_cols=32 Identities=22% Similarity=0.391 Sum_probs=26.3
Q ss_pred ccccHHHHHHHHhHHHhCCCeEEEEechhhHH
Q psy2047 176 ESGKLKKLDEILPDLKKNGHRVLIFSQFIFVL 207 (233)
Q Consensus 176 ~s~Kl~~l~~lL~~~~~~~~KvlIFSq~~~~L 207 (233)
.|||-.++..+|..+...|+++|||=.--.++
T Consensus 25 GsGKT~~i~~ll~~~~~~g~~~iI~D~kg~~~ 56 (386)
T PF10412_consen 25 GSGKTQAIRHLLDQIRARGDRAIIYDPKGEFT 56 (386)
T ss_dssp TSSHHHHHHHHHHHHHHTT-EEEEEEETTHHH
T ss_pred CCCHHHHHHHHHHHHHHcCCEEEEEECCchHH
Confidence 38999999999999999999999997654443
No 202
>cd01522 RHOD_1 Member of the Rhodanese Homology Domain superfamily, subgroup 1. This CD includes the putative rhodanese-related sulfurtransferases of several uncharacterized proteins.
Probab=28.25 E-value=1.4e+02 Score=20.54 Aligned_cols=39 Identities=8% Similarity=-0.081 Sum_probs=28.6
Q ss_pred hCCCeEEEEechhhHHHHHHHHHHhcCCe-EEEeeCCccc
Q psy2047 192 KNGHRVLIFSQFIFVLDILGHYMDIRGWR-HLRLDGATQV 230 (233)
Q Consensus 192 ~~~~KvlIFSq~~~~Ld~l~~~l~~~gi~-~~rldG~~~~ 230 (233)
..+.++||+|..-..-......|...|+. ...+.|+++.
T Consensus 62 ~~~~~ivv~C~~G~rs~~aa~~L~~~G~~~v~~l~gG~~~ 101 (117)
T cd01522 62 GKDRPVLLLCRSGNRSIAAAEAAAQAGFTNVYNVLEGFEG 101 (117)
T ss_pred CCCCeEEEEcCCCccHHHHHHHHHHCCCCeEEECcCceec
Confidence 34568999998766666677888899997 4458887754
No 203
>cd08183 Fe-ADH2 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenases (Fe-ADH). Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions. The protein structure represents a dehydroquinate synthase-like fold and is a member of the iron-activated alcohol dehydrogenase-like family. They are distinct from other alcohol dehydrogenases which contains different protein domain. Proteins of this family have not been characterized. Their specific function is unknown. They are mainly found in bacteria.
Probab=28.09 E-value=1.8e+02 Score=24.87 Aligned_cols=46 Identities=22% Similarity=0.237 Sum_probs=31.1
Q ss_pred ccHHHHHHHHhHHHhCCCeEEEEe-chhhHHHHHHHHHHhcCCeEEEeeC
Q psy2047 178 GKLKKLDEILPDLKKNGHRVLIFS-QFIFVLDILGHYMDIRGWRHLRLDG 226 (233)
Q Consensus 178 ~Kl~~l~~lL~~~~~~~~KvlIFS-q~~~~Ld~l~~~l~~~gi~~~rldG 226 (233)
+-+..+-+.+..+ +.|++|++ ......+-+...|+..|+.+..+++
T Consensus 9 g~~~~l~~~l~~~---~~r~livtd~~~~~~~~v~~~L~~~g~~~~~~~~ 55 (374)
T cd08183 9 GVAKELPALAAEL---GRRVLLVTGASSLRAAWLIEALRAAGIEVTHVVV 55 (374)
T ss_pred CHHHHHHHHHHHc---CCcEEEEECCchHHHHHHHHHHHHcCCeEEEecC
Confidence 4455555555554 56887776 3444777788888888998877764
No 204
>PF00265 TK: Thymidine kinase; InterPro: IPR001267 Thymidine kinase (TK) (2.7.1.21 from EC) is an ubiquitous enzyme that catalyzes the ATP-dependent phosphorylation of thymidine. Two different families of Thymidine kinase have been identified [, ] and are represented in this entry; one groups together Thymidine kinase from herpesviruses, as well as cytosolic thymidylate kinases and the second family groups Thymidine kinase from various sources that include, vertebrates, bacteria, the Bacteriophage T4, poxviruses, African swine fever virus (ASFV) and Fish lymphocystis disease virus (FLDV). The major capsid protein of insect iridescent viruses also belongs to this family.; GO: 0004797 thymidine kinase activity, 0005524 ATP binding; PDB: 1XX6_B 2J9R_A 2J87_B 3E2I_A 2JA1_A 2UZ3_B 2B8T_B 2WVJ_A 1W4R_F 1XBT_F ....
Probab=28.09 E-value=70 Score=24.23 Aligned_cols=30 Identities=30% Similarity=0.337 Sum_probs=25.2
Q ss_pred ccccHHHHHHHHhHHHhCCCeEEEEechhh
Q psy2047 176 ESGKLKKLDEILPDLKKNGHRVLIFSQFIF 205 (233)
Q Consensus 176 ~s~Kl~~l~~lL~~~~~~~~KvlIFSq~~~ 205 (233)
.|||-..|++.++.....|.|+++|.....
T Consensus 11 ~sGKS~eLi~~~~~~~~~~~~v~~~kp~~D 40 (176)
T PF00265_consen 11 FSGKSTELIRRIHRYEIAGKKVLVFKPAID 40 (176)
T ss_dssp TSSHHHHHHHHHHHHHHTT-EEEEEEESTS
T ss_pred CChhHHHHHHHHHHHHhCCCeEEEEEeccc
Confidence 399999999999999889999999986554
No 205
>cd01425 RPS2 Ribosomal protein S2 (RPS2), involved in formation of the translation initiation complex, where it might contact the messenger RNA and several components of the ribosome. It has been shown that in Escherichia coli RPS2 is essential for the binding of ribosomal protein S1 to the 30s ribosomal subunit. In humans, most likely in all vertebrates, and perhaps in all metazoans, the protein also functions as the 67 kDa laminin receptor (LAMR1 or 67LR), which is formed from a 37 kDa precursor, and is overexpressed in many tumors. 67LR is a cell surface receptor which interacts with a variety of ligands, laminin-1 and others. It is assumed that the ligand interactions are mediated via the conserved C-terminus, which becomes extracellular as the protein undergoes conformational changes which are not well understood. Specifically, a conserved palindromic motif, LMWWML, may participate in the interactions. 67LR plays essential roles in the adhesion of cells to the basement membrane an
Probab=28.04 E-value=2.8e+02 Score=21.26 Aligned_cols=51 Identities=14% Similarity=0.183 Sum_probs=38.4
Q ss_pred cccHHHHHHHHhHHHhCCCeEEEEechhhHHHHHHHHHHhcCCeEE--EeeCC
Q psy2047 177 SGKLKKLDEILPDLKKNGHRVLIFSQFIFVLDILGHYMDIRGWRHL--RLDGA 227 (233)
Q Consensus 177 s~Kl~~l~~lL~~~~~~~~KvlIFSq~~~~Ld~l~~~l~~~gi~~~--rldG~ 227 (233)
-..+.....++..+...+.++|+.+.-...-.+++.+.+..|..|+ |.-|+
T Consensus 39 ~~~L~~A~~~i~~i~~~~g~iLfV~t~~~~~~~v~~~a~~~~~~~i~~rw~~G 91 (193)
T cd01425 39 LEKLRLALNFIANIAAKGGKILFVGTKPQAQRAVKKFAERTGSFYVNGRWLGG 91 (193)
T ss_pred HHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHHcCCeeecCeecCC
Confidence 4566677777888877788999998888888888888887766654 44444
No 206
>COG0556 UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair]
Probab=27.79 E-value=1.3e+02 Score=27.36 Aligned_cols=49 Identities=18% Similarity=0.296 Sum_probs=39.7
Q ss_pred HHHHHHhHH---HhCCCeEEEEechhhHHHHHHHHHHhcCCeEEEeeCCccc
Q psy2047 182 KLDEILPDL---KKNGHRVLIFSQFIFVLDILGHYMDIRGWRHLRLDGATQV 230 (233)
Q Consensus 182 ~l~~lL~~~---~~~~~KvlIFSq~~~~Ld~l~~~l~~~gi~~~rldG~~~~ 230 (233)
.+.+++.++ .+.+++++|-+--..|-+-|-.+|...||+..-++.....
T Consensus 431 QvdDL~~EI~~r~~~~eRvLVTtLTKkmAEdLT~Yl~e~gikv~YlHSdidT 482 (663)
T COG0556 431 QVDDLLSEIRKRVAKNERVLVTTLTKKMAEDLTEYLKELGIKVRYLHSDIDT 482 (663)
T ss_pred cHHHHHHHHHHHHhcCCeEEEEeehHHHHHHHHHHHHhcCceEEeeeccchH
Confidence 444555554 4668999999999999999999999999998888876543
No 207
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=27.51 E-value=72 Score=25.91 Aligned_cols=27 Identities=15% Similarity=0.367 Sum_probs=21.0
Q ss_pred ccHHHHHHHHhHHHhCCCeEEEEechh
Q psy2047 178 GKLKKLDEILPDLKKNGHRVLIFSQFI 204 (233)
Q Consensus 178 ~Kl~~l~~lL~~~~~~~~KvlIFSq~~ 204 (233)
.-+..|-.+++.++..++|+||||-=.
T Consensus 122 ~dl~~Lp~l~~~Lr~~~~kFIlFcDDL 148 (287)
T COG2607 122 EDLATLPDLVELLRARPEKFILFCDDL 148 (287)
T ss_pred HHHhhHHHHHHHHhcCCceEEEEecCC
Confidence 345667778888888899999998643
No 208
>COG3172 NadR Predicted ATPase/kinase involved in NAD metabolism [Coenzyme metabolism]
Probab=27.24 E-value=79 Score=23.95 Aligned_cols=24 Identities=8% Similarity=0.203 Sum_probs=20.7
Q ss_pred hhHHHHHHHHHHhcCCeEEEeeCC
Q psy2047 204 IFVLDILGHYMDIRGWRHLRLDGA 227 (233)
Q Consensus 204 ~~~Ld~l~~~l~~~gi~~~rldG~ 227 (233)
..+...++.+|.+.+++|+.|+|.
T Consensus 142 ~~F~~~l~~~L~~~~~~~v~i~~~ 165 (187)
T COG3172 142 QEFQNLLEQMLEENNIPFVVIEGE 165 (187)
T ss_pred HHHHHHHHHHHHHhCCcEEEEcCC
Confidence 467888999999999999999983
No 209
>cd08191 HHD 6-hydroxyhexanoate dehydrogenase (HHD) catalyzes the oxidation of 6-hydroxyhexanoate to 6-oxohexanoate. 6-hydroxyhexanoate dehydrogenase (HHD). The 6-hydroxyhexanoate dehydrogenase catalyzes the oxidation of 6-hydroxyhexanoate to 6-oxohexanoate. Some bacteria can grow on cyclic ketones, cyclohexylamine, and alcohols as sole carbon source. Cyclohexylamine is an insecticide and antiseptic in various industries and is considered a possible environmental pollutant. The degradation of these chemical compounds are through the cyclohexanol and cyclohexanone biological oxidation pathway. The intermediates of this pathway include cyclohexanol, cyclohexanone, e-caprolactone, 6-hydroxyhexanoate, 6-oxohexanoate and adipate. The 6-hydroxyhexanoate dehydrogenase catalyzes the oxidation of 6-hydroxyhexanoate to 6-oxohexanoate.
Probab=26.92 E-value=2.3e+02 Score=24.30 Aligned_cols=49 Identities=24% Similarity=0.311 Sum_probs=32.6
Q ss_pred ccHHHHHHHHhHHHhCCCeEEEEech----hhHHHHHHHHHHhcCCeEEEeeCCcc
Q psy2047 178 GKLKKLDEILPDLKKNGHRVLIFSQF----IFVLDILGHYMDIRGWRHLRLDGATQ 229 (233)
Q Consensus 178 ~Kl~~l~~lL~~~~~~~~KvlIFSq~----~~~Ld~l~~~l~~~gi~~~rldG~~~ 229 (233)
+-+..+-+.++.+ |.|++|++.- ...++.+...|+..|+.+..++|-.+
T Consensus 9 g~l~~l~~~~~~~---g~~~livt~~~~~~~~~~~~v~~~L~~~~~~~~~f~~v~~ 61 (386)
T cd08191 9 GQRRQLPRLAARL---GSRALIVTDERMAGTPVFAELVQALAAAGVEVEVFDGVLP 61 (386)
T ss_pred CHHHHHHHHHHHc---CCeEEEEECcchhhcchHHHHHHHHHHcCCeEEEECCCCC
Confidence 3344444444433 4678777742 24677788888888999988888763
No 210
>COG2927 HolC DNA polymerase III, chi subunit [DNA replication, recombination, and repair]
Probab=26.83 E-value=2e+02 Score=21.10 Aligned_cols=35 Identities=17% Similarity=0.061 Sum_probs=31.7
Q ss_pred HHHHHHhHHHhCCCeEEEEechhhHHHHHHHHHHh
Q psy2047 182 KLDEILPDLKKNGHRVLIFSQFIFVLDILGHYMDI 216 (233)
Q Consensus 182 ~l~~lL~~~~~~~~KvlIFSq~~~~Ld~l~~~l~~ 216 (233)
++-.++++....|.||+|-|....-.+-|-..|..
T Consensus 17 ~~c~L~~k~~~~G~rvlI~~~d~~q~e~LD~~LWt 51 (144)
T COG2927 17 AACRLAEKAWRSGWRVLIQCEDEAQAEALDEHLWT 51 (144)
T ss_pred HHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHhhhc
Confidence 88899999999999999999999999999988854
No 211
>TIGR02638 lactal_redase lactaldehyde reductase. This clade of genes encoding iron-containing alcohol dehydrogenase (pfam00465) proteins is generally found in apparent operons for the catabolism of rhamnose or fucose. Catabolism of both of these monosaccharides results in lactaldehyde which is reduced by this enzyme to 1,2 propanediol. This protein is alternatively known by the name 1,2 propanediol oxidoreductase. This enzyme is active under anaerobic conditions in E. coli while being inactivated by reactive oxygen species under aerobic conditions. Under aerobic conditions the lactaldehyde product of rhamnose and fucose catabolism is believed to be oxidized to lactate by a separate enzyme, lactaldehyde dehydrogenase.
Probab=26.72 E-value=2.1e+02 Score=24.58 Aligned_cols=56 Identities=14% Similarity=0.217 Sum_probs=36.4
Q ss_pred chhhhccccHHHHHHHHhHHHhCC-CeEEEEech-h---hHHHHHHHHHHhcCCeEEEeeCCcc
Q psy2047 171 DDLVVESGKLKKLDEILPDLKKNG-HRVLIFSQF-I---FVLDILGHYMDIRGWRHLRLDGATQ 229 (233)
Q Consensus 171 ~~~~~~s~Kl~~l~~lL~~~~~~~-~KvlIFSq~-~---~~Ld~l~~~l~~~gi~~~rldG~~~ 229 (233)
...+...+-+..+-+.+..+ | .|++|++.- . ..++.+...|+..|+.+..++|-.+
T Consensus 8 ~~i~fG~g~l~~l~~~l~~~---g~~r~lvvt~~~~~~~g~~~~v~~~L~~~~i~~~~~~~v~~ 68 (379)
T TIGR02638 8 ETSYFGAGAIEDIVDEVKRR---GFKKALVVTDKDLIKFGVADKVTDLLDEAGIAYELFDEVKP 68 (379)
T ss_pred CeEEECcCHHHHHHHHHHhc---CCCEEEEEcCcchhhccchHHHHHHHHHCCCeEEEECCCCC
Confidence 33333445666666666544 4 588877642 2 2567788888888999888887654
No 212
>cd08171 GlyDH-like2 Glycerol dehydrogenase-like. Glycerol dehydrogenases-like. The proteins in this family have not been characterized, but they show sequence homology with glycerol dehydrogenase. Glycerol dehydrogenases (GlyDH) is a key enzyme in the glycerol dissimilation pathway. In anaerobic conditions, many microorganisms utilize glycerol as a source of carbon through coupled oxidative and reductive pathways. One of the pathways involves the oxidation of glycerol to dihydroxyacetone with the reduction of NAD+ to NADH catalyzed by glycerol dehydrogenases. Dihydroxyacetone is then phosphorylated by dihydroxyacetone kinase and enters the glycolytic pathway for further degradation. The activity of GlyDH is zinc-dependent. The zinc ion plays a role in stabilizing an alkoxide intermediate at the active site.
Probab=26.50 E-value=2.5e+02 Score=23.69 Aligned_cols=45 Identities=16% Similarity=0.207 Sum_probs=29.1
Q ss_pred cHHHHHHHHhHHHhCCCeEEEEec---hhhHHHHHHHHHHhcCCeEEEeeC
Q psy2047 179 KLKKLDEILPDLKKNGHRVLIFSQ---FIFVLDILGHYMDIRGWRHLRLDG 226 (233)
Q Consensus 179 Kl~~l~~lL~~~~~~~~KvlIFSq---~~~~Ld~l~~~l~~~gi~~~rldG 226 (233)
.+..+-+.+.. .+.|++|++. +....+.+...|+..|+.+..+++
T Consensus 10 ~~~~l~~~~~~---~~~r~liv~d~~~~~~~~~~v~~~l~~~~~~~~~~~~ 57 (345)
T cd08171 10 AYKKIPEVCEK---YGKKVVVIGGKTALAAAKDKIKAALEQSGIEITDFIW 57 (345)
T ss_pred HHHHHHHHHHh---cCCEEEEEeCHHHHHHHHHHHHHHHHHCCCeEEEEEe
Confidence 34444444443 2578888775 445677788888888888766654
No 213
>PRK10586 putative oxidoreductase; Provisional
Probab=26.11 E-value=2.5e+02 Score=24.04 Aligned_cols=57 Identities=14% Similarity=0.260 Sum_probs=39.0
Q ss_pred chhhhccccHHHHHHHHhHHHhCC-CeEEEEec---hhhHHHHHHHHHHhcCCeEEEeeCCccc
Q psy2047 171 DDLVVESGKLKKLDEILPDLKKNG-HRVLIFSQ---FIFVLDILGHYMDIRGWRHLRLDGATQV 230 (233)
Q Consensus 171 ~~~~~~s~Kl~~l~~lL~~~~~~~-~KvlIFSq---~~~~Ld~l~~~l~~~gi~~~rldG~~~~ 230 (233)
...+...+-+..+-+.++.+ | .|+||++. +....+.+...|+..|+.+..++|..+.
T Consensus 13 ~~y~~G~ga~~~l~~~~~~~---g~~~~lvv~g~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~~ 73 (362)
T PRK10586 13 ANYFSHPGSIDHLHDFFTDE---QLSRAVWIYGERAIAAAQPYLPPAFELPGAKHILFRGHCSE 73 (362)
T ss_pred cceEECcCHHHHHHHHHHhc---CCCeEEEEEChHHHHHHHHHHHHHHHHcCCeEEEeCCCCCH
Confidence 33344456666666666654 4 67887775 3334567788889999999999988764
No 214
>PF14626 RNase_Zc3h12a_2: Zc3h12a-like Ribonuclease NYN domain
Probab=26.11 E-value=94 Score=21.98 Aligned_cols=22 Identities=32% Similarity=0.557 Sum_probs=18.6
Q ss_pred HHHHHHHHhHHHhCCCeEEEEe
Q psy2047 180 LKKLDEILPDLKKNGHRVLIFS 201 (233)
Q Consensus 180 l~~l~~lL~~~~~~~~KvlIFS 201 (233)
.++|.++|=...-.|+|++||=
T Consensus 9 Vk~L~eIll~FilrGHKT~vyL 30 (122)
T PF14626_consen 9 VKALVEILLHFILRGHKTVVYL 30 (122)
T ss_pred HHHHHHHHHHHHhccCeeEEEC
Confidence 4678888888889999999983
No 215
>PF02875 Mur_ligase_C: Mur ligase family, glutamate ligase domain This Prosite entry is a subset of the Pfam family.; InterPro: IPR004101 The bacterial cell wall provides strength and rigidity to counteract internal osmotic pressure, and protection against the environment. The peptidoglycan layer gives the cell wall its strength, and helps maintain the overall shape of the cell. The basic peptidoglycan structure of both Gram-positive and Gram-negative bacteria is comprised of a sheet of glycan chains connected by short cross-linking polypeptides. Biosynthesis of peptidoglycan is a multi-step (11-12 steps) process comprising three main stages: (1) formation of UDP-N-acetylmuramic acid (UDPMurNAc) from N-acetylglucosamine (GlcNAc). (2) addition of a short polypeptide chain to the UDPMurNAc. (3) addition of a second GlcNAc to the disaccharide-pentapeptide building block and transport of this unit through the cytoplasmic membrane and incorporation into the growing peptidoglycan layer. Stage two involves four key Mur ligase enzymes: MurC (6.3.2.8 from EC) [], MurD (6.3.2.9 from EC) [], MurE (6.3.2.13 from EC) [] and MurF (6.3.2.10 from EC) []. These four Mur ligases are responsible for the successive additions of L-alanine, D-glutamate, meso-diaminopimelate or L-lysine, and D-alanyl-D-alanine to UDP-N-acetylmuramic acid. All four Mur ligases are topologically similar to one another, even though they display low sequence identity. They are each composed of three domains: an N-terminal Rossmann-fold domain responsible for binding the UDPMurNAc substrate; a central domain (similar to ATP-binding domains of several ATPases and GTPases); and a C-terminal domain (similar to dihydrofolate reductase fold) that appears to be associated with binding the incoming amino acid. The conserved sequence motifs found in the four Mur enzymes also map to other members of the Mur ligase family, including folylpolyglutamate synthetase, cyanophycin synthetase and the capB enzyme from Bacillales []. This entry represents the C-terminal domain from all four stage 2 Mur enzymes: UDP-N-acetylmuramate-L-alanine ligase (MurC), UDP-N-acetylmuramoylalanine-D-glutamate ligase (MurD), UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase (MurE), and UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase (MurF). This entry also includes the C-terminal domain of folylpolyglutamate synthase that transfers glutamate to folylpolyglutamate and cyanophycin synthetase that catalyses the biosynthesis of the cyanobacterial reserve material multi-L-arginyl-poly-L-aspartate (cyanophycin) []. The C-terminal domain is almost always associated with the cytoplasmic peptidoglycan synthetases, N-terminal domain (see IPR000713 from INTERPRO).; GO: 0005524 ATP binding, 0016874 ligase activity, 0009058 biosynthetic process; PDB: 2Y68_A 3UAG_A 4UAG_A 2UAG_A 1E0D_A 2XPC_A 2WJP_A 2VTE_A 2Y67_A 1EEH_A ....
Probab=26.06 E-value=1.9e+02 Score=18.70 Aligned_cols=54 Identities=17% Similarity=0.212 Sum_probs=35.8
Q ss_pred cccHHHHHHHHhHHHhCCCeEEEEech-------hhHHHHHHHHHHhcCCeEEEeeCCcccC
Q psy2047 177 SGKLKKLDEILPDLKKNGHRVLIFSQF-------IFVLDILGHYMDIRGWRHLRLDGATQVS 231 (233)
Q Consensus 177 s~Kl~~l~~lL~~~~~~~~KvlIFSq~-------~~~Ld~l~~~l~~~gi~~~rldG~~~~~ 231 (233)
..-+.++++.++.+...+.+++||..- ......+...+...... +.+.|.-+..
T Consensus 24 p~s~~a~l~~l~~~~~~~~~i~V~G~~~d~g~~~~~~~~~~~~~~~~~~d~-vi~~~~~~r~ 84 (91)
T PF02875_consen 24 PDSIRALLEALKELYPKGRIIAVFGAMGDLGSKDKDFHEEIGELAAQLADV-VILTGDNPRA 84 (91)
T ss_dssp HHHHHHHHHHHHHHCTTSEEEEEEEEBTT-HTSHHHCHHHHHHHHTTCSSE-EEEETSBTTT
T ss_pred HHHHHHHHHHHHHhccCCcEEEEEccccccccccHHHHHHHHHHHHhcCCE-EEEcCCCCCC
Confidence 456777888887776667799999952 23345677777665555 6666665543
No 216
>PRK05973 replicative DNA helicase; Provisional
Probab=25.94 E-value=1.6e+02 Score=23.58 Aligned_cols=43 Identities=19% Similarity=0.081 Sum_probs=32.5
Q ss_pred ccccHHHHHHHHhHHHhCCCeEEEEechhhHHHHHHHHHHhcCC
Q psy2047 176 ESGKLKKLDEILPDLKKNGHRVLIFSQFIFVLDILGHYMDIRGW 219 (233)
Q Consensus 176 ~s~Kl~~l~~lL~~~~~~~~KvlIFSq~~~~Ld~l~~~l~~~gi 219 (233)
.+||-.+..+++.....+|+++++||---+.-++++.+. ..|+
T Consensus 74 G~GKT~lalqfa~~~a~~Ge~vlyfSlEes~~~i~~R~~-s~g~ 116 (237)
T PRK05973 74 GHGKTLLGLELAVEAMKSGRTGVFFTLEYTEQDVRDRLR-ALGA 116 (237)
T ss_pred CCCHHHHHHHHHHHHHhcCCeEEEEEEeCCHHHHHHHHH-HcCC
Confidence 379999999999888778999999987666555555543 3344
No 217
>TIGR03865 PQQ_CXXCW PQQ-dependent catabolism-associated CXXCW motif protein. Members of this protein family have a CXXXCW motif, consistent with a possible role in redox cofactor binding. This protein family shows strong relationships by phylogenetic profiling and conserved gene neighborhoods with a transport system for alcohols metabolized by PQQ-dependent enzymes.
Probab=25.94 E-value=2e+02 Score=21.34 Aligned_cols=37 Identities=5% Similarity=-0.048 Sum_probs=26.3
Q ss_pred CCCeEEEEechhh-HHHHHHHHHHhcCCe-EEEeeCCcc
Q psy2047 193 NGHRVLIFSQFIF-VLDILGHYMDIRGWR-HLRLDGATQ 229 (233)
Q Consensus 193 ~~~KvlIFSq~~~-~Ld~l~~~l~~~gi~-~~rldG~~~ 229 (233)
.+..+|++|..-. .-......|...|+. ...++|++.
T Consensus 115 ~d~~IVvYC~~G~~~S~~aa~~L~~~G~~~V~~l~GG~~ 153 (162)
T TIGR03865 115 KDRPLVFYCLADCWMSWNAAKRALAYGYSNVYWYPDGTD 153 (162)
T ss_pred CCCEEEEEECCCCHHHHHHHHHHHhcCCcceEEecCCHH
Confidence 4568999998532 234466777889997 566899875
No 218
>PF10017 Methyltransf_33: Histidine-specific methyltransferase, SAM-dependent; InterPro: IPR019257 This domain is found in methyltransferases and various hypothetical proteins.
Probab=25.89 E-value=1.1e+02 Score=21.70 Aligned_cols=33 Identities=12% Similarity=0.196 Sum_probs=29.6
Q ss_pred HhCCCeEEEEechhhHHHHHHHHHHhcCCeEEE
Q psy2047 191 KKNGHRVLIFSQFIFVLDILGHYMDIRGWRHLR 223 (233)
Q Consensus 191 ~~~~~KvlIFSq~~~~Ld~l~~~l~~~gi~~~r 223 (233)
...|+++.++..|.-+.+-+..++...|+....
T Consensus 82 ~~~GE~I~~e~S~Ky~~~~~~~l~~~aGl~~~~ 114 (127)
T PF10017_consen 82 FKEGERIHTENSYKYSPEEFEALAEQAGLEVEK 114 (127)
T ss_pred ECCCCEEEEEEeeCcCHHHHHHHHHHCCCeeEE
Confidence 366999999999999999999999999997654
No 219
>PRK10287 thiosulfate:cyanide sulfurtransferase; Provisional
Probab=25.55 E-value=2.2e+02 Score=19.32 Aligned_cols=36 Identities=11% Similarity=0.106 Sum_probs=25.8
Q ss_pred CCeEEEEechhhHHHHHHHHHHhcCCeEEEeeCCcc
Q psy2047 194 GHRVLIFSQFIFVLDILGHYMDIRGWRHLRLDGATQ 229 (233)
Q Consensus 194 ~~KvlIFSq~~~~Ld~l~~~l~~~gi~~~rldG~~~ 229 (233)
+..+|++|..-..-......|...|++-+...|++.
T Consensus 60 ~~~IVlyC~~G~rS~~aa~~L~~~G~~~v~~~GG~~ 95 (104)
T PRK10287 60 NDTVKLYCNAGRQSGQAKEILSEMGYTHAENAGGLK 95 (104)
T ss_pred CCeEEEEeCCChHHHHHHHHHHHcCCCeEEecCCHH
Confidence 356889987655555667788889998666678753
No 220
>KOG0599|consensus
Probab=25.54 E-value=51 Score=27.35 Aligned_cols=63 Identities=19% Similarity=0.169 Sum_probs=36.2
Q ss_pred HHHhhhhhhhhcchhhhhhcCCCceEEEEEeeCCHHHHHHHHHHHHHHhhhcCCCCCCCCccchhhHHHHHHHHhhcccc
Q psy2047 29 AKRIISPFMLRRLKKDVLTELPKKTALVIKVPMIPSQAEKYRGLMEDFKKTANPEGSNRSNEISHMSMFMMLRKMANHPL 108 (233)
Q Consensus 29 L~~~l~~~~lRRtk~~~~~~LP~k~e~~v~v~ls~~q~~lY~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~Lr~~c~hp~ 108 (233)
|-.-+.+.+-|+..+....+.-.|...+.--..++.+ .|+...+. ..-+..|||+..||+
T Consensus 25 lgrgvss~vrRci~k~t~~e~a~kii~~~at~~~~e~--~~~~~EaT------------------~~Ev~ILRqv~GHP~ 84 (411)
T KOG0599|consen 25 LGRGVSSVVRRCIHKETGKEFAVKIIDVTATTESGET--PYEMREAT------------------RQEISILRQVMGHPY 84 (411)
T ss_pred hcccchhhhhhhhhcccccceeEEEEEecccccCCcc--HHHHHHHH------------------HHHHHHHHHhcCCCc
Confidence 4444445555555554444555555555555555555 55544433 234556999999999
Q ss_pred chh
Q psy2047 109 GLR 111 (233)
Q Consensus 109 l~~ 111 (233)
++.
T Consensus 85 II~ 87 (411)
T KOG0599|consen 85 IID 87 (411)
T ss_pred EEE
Confidence 876
No 221
>KOG1803|consensus
Probab=25.39 E-value=84 Score=28.86 Aligned_cols=49 Identities=24% Similarity=0.311 Sum_probs=42.8
Q ss_pred ccccHHHHHHHHhHHHhCCCeEEEEechhhHHHHHHHHHHhcCCeEEEe
Q psy2047 176 ESGKLKKLDEILPDLKKNGHRVLIFSQFIFVLDILGHYMDIRGWRHLRL 224 (233)
Q Consensus 176 ~s~Kl~~l~~lL~~~~~~~~KvlIFSq~~~~Ld~l~~~l~~~gi~~~rl 224 (233)
..||--.|.++|..+...+.||||-....-.+|=|...|...|.+.+|+
T Consensus 211 GTGKT~TlvEiI~qlvk~~k~VLVcaPSn~AVdNiverl~~~~~~l~R~ 259 (649)
T KOG1803|consen 211 GTGKTRTLVEIISQLVKQKKRVLVCAPSNVAVDNIVERLTHLKLNLVRV 259 (649)
T ss_pred CCCceeeHHHHHHHHHHcCCeEEEEcCchHHHHHHHHHhcccccchhhc
Confidence 3799999999999999999999999999999999998887767666554
No 222
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=25.20 E-value=2.2e+02 Score=19.11 Aligned_cols=53 Identities=19% Similarity=0.080 Sum_probs=39.9
Q ss_pred ccccHHHHHHHHhHHHh--CCCeEEEEechhhHHHHHHHHHHhcC---CeEEEeeCCc
Q psy2047 176 ESGKLKKLDEILPDLKK--NGHRVLIFSQFIFVLDILGHYMDIRG---WRHLRLDGAT 228 (233)
Q Consensus 176 ~s~Kl~~l~~lL~~~~~--~~~KvlIFSq~~~~Ld~l~~~l~~~g---i~~~rldG~~ 228 (233)
.+||-..+...+..... .+.+++|++......+.....+.... +.+..++|..
T Consensus 10 G~GKT~~~~~~~~~~~~~~~~~~~lv~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 67 (144)
T cd00046 10 GSGKTLAALLPILELLDSLKGGQVLVLAPTRELANQVAERLKELFGEGIKVGYLIGGT 67 (144)
T ss_pred CCchhHHHHHHHHHHHhcccCCCEEEEcCcHHHHHHHHHHHHHHhhCCcEEEEEecCc
Confidence 48998888888877665 34699999999988888877776654 6666666653
No 223
>KOG3282|consensus
Probab=25.04 E-value=2.9e+02 Score=21.22 Aligned_cols=41 Identities=22% Similarity=0.203 Sum_probs=32.3
Q ss_pred HHHhHHHhCCC-eEEEEechhhHHHHHHHHHHhcCCe-EEEee
Q psy2047 185 EILPDLKKNGH-RVLIFSQFIFVLDILGHYMDIRGWR-HLRLD 225 (233)
Q Consensus 185 ~lL~~~~~~~~-KvlIFSq~~~~Ld~l~~~l~~~gi~-~~rld 225 (233)
++|+.|...|. |++|=++....+..|...-++.|.. |+..|
T Consensus 114 ~ll~~We~~GQ~KIvvk~~~e~~l~~l~~~A~~~gl~t~~i~D 156 (190)
T KOG3282|consen 114 ELLRRWENCGQAKIVVKAESEEELMELQKDAKKLGLYTHLIQD 156 (190)
T ss_pred HHHHHHHHcCCceEEEEcCCHHHHHHHHHHHHHcCCcEEEEEc
Confidence 57888888887 9999999988877777777888876 44444
No 224
>PLN02160 thiosulfate sulfurtransferase
Probab=25.00 E-value=1.6e+02 Score=21.10 Aligned_cols=38 Identities=11% Similarity=-0.060 Sum_probs=29.6
Q ss_pred hCCCeEEEEechhhHHHHHHHHHHhcCCe-EEEeeCCcc
Q psy2047 192 KNGHRVLIFSQFIFVLDILGHYMDIRGWR-HLRLDGATQ 229 (233)
Q Consensus 192 ~~~~KvlIFSq~~~~Ld~l~~~l~~~gi~-~~rldG~~~ 229 (233)
..+.++|++|..-..=..-...|...|+. +..++|++.
T Consensus 79 ~~~~~IivyC~sG~RS~~Aa~~L~~~G~~~v~~l~GG~~ 117 (136)
T PLN02160 79 NPADDILVGCQSGARSLKATTELVAAGYKKVRNKGGGYL 117 (136)
T ss_pred CCCCcEEEECCCcHHHHHHHHHHHHcCCCCeeecCCcHH
Confidence 34568999998877777778888889996 666888864
No 225
>PF10879 DUF2674: Protein of unknown function (DUF2674); InterPro: IPR024246 This family of proteins with unknown function appears to be restricted to Rickettsia spp.
Probab=24.98 E-value=1.4e+02 Score=17.88 Aligned_cols=29 Identities=21% Similarity=0.545 Sum_probs=23.0
Q ss_pred CeEEEEechhhHHHHHHHHHHhcCCeEEEe
Q psy2047 195 HRVLIFSQFIFVLDILGHYMDIRGWRHLRL 224 (233)
Q Consensus 195 ~KvlIFSq~~~~Ld~l~~~l~~~gi~~~rl 224 (233)
.|+|-||...+-++-|...+. .||..+.+
T Consensus 6 qk~isfsehkadierikk~ie-egwaivkl 34 (67)
T PF10879_consen 6 QKVISFSEHKADIERIKKSIE-EGWAIVKL 34 (67)
T ss_pred hceeehhhhhhhHHHHHHHHh-cCeEEEEE
Confidence 589999999999888887763 57776665
No 226
>COG0607 PspE Rhodanese-related sulfurtransferase [Inorganic ion transport and metabolism]
Probab=24.52 E-value=86 Score=20.82 Aligned_cols=37 Identities=11% Similarity=0.304 Sum_probs=30.8
Q ss_pred CCCeEEEEechhhHHHHHHHHHHhcCCeEE-EeeCCcc
Q psy2047 193 NGHRVLIFSQFIFVLDILGHYMDIRGWRHL-RLDGATQ 229 (233)
Q Consensus 193 ~~~KvlIFSq~~~~Ld~l~~~l~~~gi~~~-rldG~~~ 229 (233)
.+.+++|+|+.-..=..-...|+..|+..+ .++|++.
T Consensus 60 ~~~~ivv~C~~G~rS~~aa~~L~~~G~~~~~~l~gG~~ 97 (110)
T COG0607 60 DDDPIVVYCASGVRSAAAAAALKLAGFTNVYNLDGGID 97 (110)
T ss_pred CCCeEEEEeCCCCChHHHHHHHHHcCCccccccCCcHH
Confidence 356888999998888888999999999877 7788764
No 227
>PF01726 LexA_DNA_bind: LexA DNA binding domain; InterPro: IPR006199 This is the DNA binding domain of the LexA SOS regulon repressor which prevents expression of DNA repair proteins in bacteria. The aligned region contains a variant form of the helix-turn-helix DNA binding motif []. This domain usually at the N terminus is found associated with IPR006198 from INTERPRO the auto-proteolytic domain of LexA 3.4.21.88 from EC.; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 1LEA_A 1JHH_A 3JSP_A 1JHF_A 3JSO_B 1LEB_A 3K2Z_A.
Probab=24.31 E-value=87 Score=19.37 Aligned_cols=20 Identities=15% Similarity=0.069 Sum_probs=13.7
Q ss_pred eeCCHHHHHHHHHHHHHHhh
Q psy2047 59 VPMIPSQAEKYRGLMEDFKK 78 (233)
Q Consensus 59 v~ls~~q~~lY~~~~~~~~~ 78 (233)
-+||+.|+++|+.+.++...
T Consensus 2 ~~LT~rQ~~vL~~I~~~~~~ 21 (65)
T PF01726_consen 2 KELTERQKEVLEFIREYIEE 21 (65)
T ss_dssp ----HHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHH
Confidence 36899999999999887653
No 228
>PRK15454 ethanol dehydrogenase EutG; Provisional
Probab=24.22 E-value=1.7e+02 Score=25.32 Aligned_cols=60 Identities=10% Similarity=0.133 Sum_probs=39.6
Q ss_pred cCCchhhhccccHHHHHHHHhHHHhCCCeEEEEec-hh---hHHHHHHHHHHhcCCeEEEeeCCcc
Q psy2047 168 KVPDDLVVESGKLKKLDEILPDLKKNGHRVLIFSQ-FI---FVLDILGHYMDIRGWRHLRLDGATQ 229 (233)
Q Consensus 168 ~~~~~~~~~s~Kl~~l~~lL~~~~~~~~KvlIFSq-~~---~~Ld~l~~~l~~~gi~~~rldG~~~ 229 (233)
..|...+...+.+..+-+.++.. ...|+||.+. +. ..++-+...|++.|+.+..+||-.+
T Consensus 25 ~~P~~i~fG~g~~~~l~~~~~~~--g~~~~lvv~~~~~~~~g~~~~v~~~L~~~gi~~~~~~~v~~ 88 (395)
T PRK15454 25 SVPPVTLCGPGAVSSCGQQAQTR--GLKHLFVMADSFLHQAGMTAGLTRSLAVKGIAMTLWPCPVG 88 (395)
T ss_pred ecCCeEEECcCHHHHHHHHHHhc--CCCEEEEEcCcchhhCccHHHHHHHHHHcCCeEEEECCCCC
Confidence 33444445567777776666553 1257777764 22 3468888899999999988876543
No 229
>COG1560 HtrB Lauroyl/myristoyl acyltransferase [Cell envelope biogenesis, outer membrane]
Probab=24.15 E-value=1.9e+02 Score=24.25 Aligned_cols=38 Identities=18% Similarity=0.209 Sum_probs=33.4
Q ss_pred HHHHhHHHhCCCeEEEEechhhHHHHHHHHHHhcCCeE
Q psy2047 184 DEILPDLKKNGHRVLIFSQFIFVLDILGHYMDIRGWRH 221 (233)
Q Consensus 184 ~~lL~~~~~~~~KvlIFSq~~~~Ld~l~~~l~~~gi~~ 221 (233)
.+.|.+..++|..+|+|+-+-...|+....+...+..+
T Consensus 112 ~e~l~e~l~~~~gvIl~~~H~gn~E~~~~~l~~~~~~~ 149 (308)
T COG1560 112 LEHLEEALANGRGVILVTPHFGNWELGGRALAQQGPKV 149 (308)
T ss_pred HHHHHHHHHcCCCEEEEecCcchHHHHHHHHHHhCCCe
Confidence 36677788889999999999999999999999887764
No 230
>cd08172 GlyDH-like1 Glycerol dehydrogenases-like. Glycerol dehydrogenases-like. The proteins in this family have not been characterized, but they show sequence homology with glycerol dehydrogenase. Glycerol dehydrogenases (GlyDH) is a key enzyme in the glycerol dissimilation pathway. In anaerobic conditions, many microorganisms utilize glycerol as a source of carbon through coupled oxidative and reductive pathways. One of the pathways involves the oxidation of glycerol to dihydroxyacetone with the reduction of NAD+ to NADH catalyzed by glycerol dehydrogenases. Dihydroxyacetone is then phosphorylated by dihydroxyacetone kinase and enters the glycolytic pathway for further degradation. The activity of GlyDH is zinc-dependent. The zinc ion plays a role in stabilizing an alkoxide intermediate at the active site.
Probab=23.92 E-value=2.1e+02 Score=24.16 Aligned_cols=46 Identities=28% Similarity=0.354 Sum_probs=25.8
Q ss_pred cHHHHHHHHhHHHhCCCeEEEEec---hhhHHHHHHHHHHhcCCeEEEeeCC
Q psy2047 179 KLKKLDEILPDLKKNGHRVLIFSQ---FIFVLDILGHYMDIRGWRHLRLDGA 227 (233)
Q Consensus 179 Kl~~l~~lL~~~~~~~~KvlIFSq---~~~~Ld~l~~~l~~~gi~~~rldG~ 227 (233)
-+..+-+.++.+ +.|++|++. +....+.+...|+..++.+..++|.
T Consensus 11 ~l~~l~~~~~~~---~~~~liv~d~~~~~~~~~~l~~~L~~~~~~~~~~~~~ 59 (347)
T cd08172 11 ALDELGELLKRF---GKRPLIVTGPRSWAAAKPYLPESLAAGEAFVLRYDGE 59 (347)
T ss_pred HHHHHHHHHHHh---CCeEEEEECHHHHHHHHHHHHHHHhcCeEEEEEeCCC
Confidence 344444555443 466766664 3345555555555566766667665
No 231
>cd00268 DEADc DEAD-box helicases. A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif (motif II). This domain contains the ATP- binding region.
Probab=23.83 E-value=3.2e+02 Score=20.49 Aligned_cols=55 Identities=22% Similarity=0.237 Sum_probs=36.2
Q ss_pred ccccHHH-HHHHHhHHHhC----CCeEEEEechhhHHHHHHHHH----HhcCCeEEEeeCCccc
Q psy2047 176 ESGKLKK-LDEILPDLKKN----GHRVLIFSQFIFVLDILGHYM----DIRGWRHLRLDGATQV 230 (233)
Q Consensus 176 ~s~Kl~~-l~~lL~~~~~~----~~KvlIFSq~~~~Ld~l~~~l----~~~gi~~~rldG~~~~ 230 (233)
.+||-.. +..++..+... +.++||.+.......-....+ ...++....++|+.+.
T Consensus 46 G~GKT~~~~~~~l~~~~~~~~~~~~~viii~p~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~ 109 (203)
T cd00268 46 GSGKTAAFLIPILEKLDPSPKKDGPQALILAPTRELALQIAEVARKLGKHTNLKVVVIYGGTSI 109 (203)
T ss_pred CCcHHHHHHHHHHHHHHhhcccCCceEEEEcCCHHHHHHHHHHHHHHhccCCceEEEEECCCCH
Confidence 3788544 56666666543 458999998776655544443 3347888888887764
No 232
>COG2247 LytB Putative cell wall-binding domain [Cell envelope biogenesis, outer membrane]
Probab=23.81 E-value=1.1e+02 Score=25.66 Aligned_cols=38 Identities=26% Similarity=0.198 Sum_probs=33.8
Q ss_pred hCCCeEEEEechhhHHHHHHHHHHhcCCeEEEeeCCcc
Q psy2047 192 KNGHRVLIFSQFIFVLDILGHYMDIRGWRHLRLDGATQ 229 (233)
Q Consensus 192 ~~~~KvlIFSq~~~~Ld~l~~~l~~~gi~~~rldG~~~ 229 (233)
.++++|||.-.=...-.--+..|+.-||.+.|+-|..-
T Consensus 74 lnpd~VLIIGGp~AVs~~yE~~Lks~GitV~RigG~nR 111 (337)
T COG2247 74 LNPDLVLIIGGPIAVSPNYENALKSLGITVKRIGGANR 111 (337)
T ss_pred hCCceEEEECCCCcCChhHHHHHHhCCcEEEEecCcch
Confidence 35789999999998888899999999999999999853
No 233
>TIGR01011 rpsB_bact ribosomal protein S2, bacterial type. TIGR01012 describes the archaeal and cytosolic forms.
Probab=23.77 E-value=2.9e+02 Score=21.90 Aligned_cols=52 Identities=19% Similarity=0.196 Sum_probs=39.1
Q ss_pred cccHHHHHHHHhHHHhCCCeEEEEechhhHHHHHHHHHHhcCCeEE--EeeCCc
Q psy2047 177 SGKLKKLDEILPDLKKNGHRVLIFSQFIFVLDILGHYMDIRGWRHL--RLDGAT 228 (233)
Q Consensus 177 s~Kl~~l~~lL~~~~~~~~KvlIFSq~~~~Ld~l~~~l~~~gi~~~--rldG~~ 228 (233)
-..+.....++..+...+.++|+.+.-...-++++.+...-|-.|+ |--|+|
T Consensus 45 ~~~L~~A~~~i~~~~~~~g~iLfV~tk~~~~~~v~~~a~~~~~~yv~~rWlgG~ 98 (225)
T TIGR01011 45 LQLLKEAYNFVKDVAANGGKILFVGTKKQAKEIIKEEAERCGMFYVNQRWLGGM 98 (225)
T ss_pred HHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHHhCCcccCCeecCee
Confidence 4566666777777777888999998888888999998887776664 444543
No 234
>KOG2414|consensus
Probab=23.76 E-value=1.1e+02 Score=26.83 Aligned_cols=22 Identities=9% Similarity=0.210 Sum_probs=19.1
Q ss_pred eCCHHHHHHHHHHHHHHhhhcC
Q psy2047 60 PMIPSQAEKYRGLMEDFKKTAN 81 (233)
Q Consensus 60 ~ls~~q~~lY~~~~~~~~~~~~ 81 (233)
.||..|++||+.+++-..+.+.
T Consensus 334 kFs~~Qr~LYeavL~vq~ecik 355 (488)
T KOG2414|consen 334 KFSDAQRDLYEAVLQVQEECIK 355 (488)
T ss_pred ccCcHHHHHHHHHHHHHHHHHH
Confidence 4899999999999998877765
No 235
>PRK10624 L-1,2-propanediol oxidoreductase; Provisional
Probab=23.55 E-value=2.7e+02 Score=23.86 Aligned_cols=54 Identities=17% Similarity=0.192 Sum_probs=35.3
Q ss_pred hhccccHHHHHHHHhHHHhCCCeEEEEec-hh---hHHHHHHHHHHhcCCeEEEeeCCcc
Q psy2047 174 VVESGKLKKLDEILPDLKKNGHRVLIFSQ-FI---FVLDILGHYMDIRGWRHLRLDGATQ 229 (233)
Q Consensus 174 ~~~s~Kl~~l~~lL~~~~~~~~KvlIFSq-~~---~~Ld~l~~~l~~~gi~~~rldG~~~ 229 (233)
+...+.+..+-+.+..+ ...|++|.+. +. ...+-+...|+..|+.+..++|-.+
T Consensus 12 ~~G~g~l~~l~~~~~~~--g~~~~lvvtd~~~~~~g~~~~v~~~L~~~g~~~~~~~~v~~ 69 (382)
T PRK10624 12 YFGRGAIGALTDEVKRR--GFKKALIVTDKTLVKCGVVAKVTDVLDAAGLAYEIYDGVKP 69 (382)
T ss_pred EECcCHHHHHHHHHHhc--CCCEEEEEeCcchhhCcchHHHHHHHHHCCCeEEEeCCCCC
Confidence 33455566666655543 1258887764 22 2577788889999999988887654
No 236
>cd02407 PTH2_family Peptidyl-tRNA hydrolase, type 2 (PTH2)_like . Peptidyl-tRNA hydrolase activity releases tRNA from the premature translation termination product peptidyl-tRNA. Two structurally different enzymes have been reported to encode such activity, Pth present in bacteria and eukaryotes and Pth2 present in archaea and eukaryotes.
Probab=23.50 E-value=2.7e+02 Score=19.48 Aligned_cols=40 Identities=18% Similarity=0.112 Sum_probs=30.6
Q ss_pred HHhHHHhCCC-eEEEEechhhHHHHHHHHHHhcCCeEEEee
Q psy2047 186 ILPDLKKNGH-RVLIFSQFIFVLDILGHYMDIRGWRHLRLD 225 (233)
Q Consensus 186 lL~~~~~~~~-KvlIFSq~~~~Ld~l~~~l~~~gi~~~rld 225 (233)
.+..|...|. |+++-......|.-|...++..|+.+..+.
T Consensus 40 ~~~~W~~~g~~KvVl~v~~~~~l~~l~~~a~~~gl~~~~v~ 80 (115)
T cd02407 40 LLRAWELEGQKKVVLKVPSEEELLELAKKAKELGLPHSLIQ 80 (115)
T ss_pred HHHHHHhCCCcEEEEECCCHHHHHHHHHHHHHcCCCeEEEE
Confidence 5667777776 888887887888888888899999855543
No 237
>PRK06756 flavodoxin; Provisional
Probab=23.43 E-value=2.3e+02 Score=20.30 Aligned_cols=42 Identities=17% Similarity=0.338 Sum_probs=29.0
Q ss_pred HHHHHHHHhHHHhCCCeEEEEec----hh---hHHHHHHHHHHhcCCeE
Q psy2047 180 LKKLDEILPDLKKNGHRVLIFSQ----FI---FVLDILGHYMDIRGWRH 221 (233)
Q Consensus 180 l~~l~~lL~~~~~~~~KvlIFSq----~~---~~Ld~l~~~l~~~gi~~ 221 (233)
+..+++-+....-.+.++.+|.. |. ..++.|...|.+.|+..
T Consensus 69 ~~~fl~~l~~~~l~~k~~~~fgt~~~~y~~~~~a~~~l~~~l~~~g~~~ 117 (148)
T PRK06756 69 FLDFYDAMDSIDLTGKKAAVFGSCDSAYPKYGVAVDILIEKLQERGAAV 117 (148)
T ss_pred HHHHHHHHhcCCCCCCEEEEEeCCCCchHHHHHHHHHHHHHHHHCCCEE
Confidence 44444444333335779999977 33 78899999999888764
No 238
>PF00318 Ribosomal_S2: Ribosomal protein S2; InterPro: IPR001865 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Ribosomal S2 proteins have been shown to belong to a family that includes 40S ribosomal subunit 40kDa proteins, putative laminin-binding proteins, NAB-1 protein and 29.3kDa protein from Haloarcula marismortui [, ]. The laminin-receptor proteins are thus predicted to be the eukaryotic homologue of the eubacterial S2 risosomal proteins [].; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 2QNH_c 3MR8_B 3PYS_B 3MS0_B 3PYN_B 1VOZ_B 2OW8_c 3PYQ_B 3D5C_B 3PYU_B ....
Probab=23.16 E-value=2e+02 Score=22.41 Aligned_cols=46 Identities=17% Similarity=0.236 Sum_probs=37.5
Q ss_pred cccHHHHHHHHhHHHhCCCeEEEEechhhHHHHHHHHHHhcCCeEE
Q psy2047 177 SGKLKKLDEILPDLKKNGHRVLIFSQFIFVLDILGHYMDIRGWRHL 222 (233)
Q Consensus 177 s~Kl~~l~~lL~~~~~~~~KvlIFSq~~~~Ld~l~~~l~~~gi~~~ 222 (233)
-..+.....+|..+...+.++|+.+.-...-.+++.+.+.-|..|+
T Consensus 39 ~~~L~~A~~~i~~i~~~~~~ILfV~t~~~~~~~v~~~a~~~~~~yi 84 (211)
T PF00318_consen 39 LEQLRKALKFIKSIAKNGGKILFVGTKPQASKIVKKFAKRTGSFYI 84 (211)
T ss_dssp HHHHHHHHHHHHHHHTTTGGEEEEECSTTHHHHHHHHHHHHTCEEE
T ss_pred HHHHHHHHHHHHHhhcCCCeEEEEEcchHHHHHHHHHHHHhCCCcc
Confidence 3466667777888777888999999988888999998888888776
No 239
>smart00195 DSPc Dual specificity phosphatase, catalytic domain.
Probab=23.06 E-value=2.5e+02 Score=19.65 Aligned_cols=41 Identities=24% Similarity=0.278 Sum_probs=26.4
Q ss_pred cHHHHHHHHhHHHhCCCeEEEEech---hhHHHHHHHHHHhcCC
Q psy2047 179 KLKKLDEILPDLKKNGHRVLIFSQF---IFVLDILGHYMDIRGW 219 (233)
Q Consensus 179 Kl~~l~~lL~~~~~~~~KvlIFSq~---~~~Ld~l~~~l~~~gi 219 (233)
-+..+.+++......|.+|+|.|.. .+..-++...+...|+
T Consensus 63 ~~~~~~~~i~~~~~~~~~VlVHC~~G~~RS~~v~~~yl~~~~~~ 106 (138)
T smart00195 63 YFPEAVEFIEDAEKKGGKVLVHCQAGVSRSATLIIAYLMKYRNL 106 (138)
T ss_pred HHHHHHHHHHHHhcCCCeEEEECCCCCchHHHHHHHHHHHHhCC
Confidence 4566677777777788999999984 3333334444444554
No 240
>TIGR01261 hisB_Nterm histidinol-phosphatase. This model describes histidinol phosphatase. All known examples in the scope of this model are bifunctional proteins with a histidinol phosphatase domain followed by an imidazoleglycerol-phosphate dehydratase domain. These enzymatic domains catalyze the ninth and seventh steps, respectively, of histidine biosynthesis.
Probab=23.06 E-value=3.2e+02 Score=20.19 Aligned_cols=39 Identities=15% Similarity=0.128 Sum_probs=30.3
Q ss_pred HHHHHhHHHhCCCeEEEEechh-------------hHHHHHHHHHHhcCCeE
Q psy2047 183 LDEILPDLKKNGHRVLIFSQFI-------------FVLDILGHYMDIRGWRH 221 (233)
Q Consensus 183 l~~lL~~~~~~~~KvlIFSq~~-------------~~Ld~l~~~l~~~gi~~ 221 (233)
+.+.|+.+.+.|-++.|.|... ..-+.+...|...|+.+
T Consensus 34 v~e~L~~L~~~g~~l~IvSN~~g~~~~~~~~~~~~~~~~~~~~~l~~~gl~f 85 (161)
T TIGR01261 34 VIPALLKLKKAGYKFVMVTNQDGLGTPSFPQADFDGPHNLMLQIFRSQGIIF 85 (161)
T ss_pred HHHHHHHHHHCCCeEEEEeCCccccCCcCCHHHHHHHHHHHHHHHHHCCCce
Confidence 5577778888889999999853 34567888899999985
No 241
>CHL00067 rps2 ribosomal protein S2
Probab=22.99 E-value=2.6e+02 Score=22.22 Aligned_cols=51 Identities=14% Similarity=0.112 Sum_probs=39.2
Q ss_pred cccHHHHHHHHhHHHhCCCeEEEEechhhHHHHHHHHHHhcCCeEE--EeeCC
Q psy2047 177 SGKLKKLDEILPDLKKNGHRVLIFSQFIFVLDILGHYMDIRGWRHL--RLDGA 227 (233)
Q Consensus 177 s~Kl~~l~~lL~~~~~~~~KvlIFSq~~~~Ld~l~~~l~~~gi~~~--rldG~ 227 (233)
-..+......|..+...+.++|+.+.....-.+++.+...-|-.|+ |.-|+
T Consensus 51 ~~~L~~A~~~i~~i~~~~g~ILfV~t~~~~~~~v~~~a~~~~~~yv~~rWigG 103 (230)
T CHL00067 51 ARFLSEACDLVFDAASKGKKFLFVGTKKQAADLVASAAIRARCHYVNKRWLGG 103 (230)
T ss_pred HHHHHHHHHHHHHHHhCCCeEEEEeCcHHHHHHHHHHHHHhCCcCccCcccCC
Confidence 3456666777777777888999999999999999998888777665 44444
No 242
>PRK00254 ski2-like helicase; Provisional
Probab=22.98 E-value=3.3e+02 Score=25.67 Aligned_cols=57 Identities=14% Similarity=0.103 Sum_probs=41.8
Q ss_pred hccccHHHH-HHHHhHHHhCCCeEEEEechhhHHHHHHHHHH---hcCCeEEEeeCCcccC
Q psy2047 175 VESGKLKKL-DEILPDLKKNGHRVLIFSQFIFVLDILGHYMD---IRGWRHLRLDGATQVS 231 (233)
Q Consensus 175 ~~s~Kl~~l-~~lL~~~~~~~~KvlIFSq~~~~Ld~l~~~l~---~~gi~~~rldG~~~~~ 231 (233)
..|||-.+. +-+++.+...+.|+|+.+......+-....+. ..|++...++|+++..
T Consensus 48 TGsGKT~~~~l~il~~l~~~~~~~l~l~P~~aLa~q~~~~~~~~~~~g~~v~~~~Gd~~~~ 108 (720)
T PRK00254 48 TASGKTLVAEIVMVNKLLREGGKAVYLVPLKALAEEKYREFKDWEKLGLRVAMTTGDYDST 108 (720)
T ss_pred CCcHHHHHHHHHHHHHHHhcCCeEEEEeChHHHHHHHHHHHHHHhhcCCEEEEEeCCCCCc
Confidence 348887766 66777777677899999988876665554444 3488999999987643
No 243
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
Probab=22.70 E-value=1.8e+02 Score=23.20 Aligned_cols=44 Identities=23% Similarity=0.218 Sum_probs=38.1
Q ss_pred ccccHHHHHHHHhHHHhCCCeEEEEechhhHHHHHHHHHHhcCCe
Q psy2047 176 ESGKLKKLDEILPDLKKNGHRVLIFSQFIFVLDILGHYMDIRGWR 220 (233)
Q Consensus 176 ~s~Kl~~l~~lL~~~~~~~~KvlIFSq~~~~Ld~l~~~l~~~gi~ 220 (233)
.++|-.+..+.+......|++++.+|---.--++++.+-. .||.
T Consensus 33 GsGKT~f~~qfl~~~~~~ge~vlyvs~~e~~~~l~~~~~~-~g~d 76 (260)
T COG0467 33 GTGKTIFALQFLYEGAREGEPVLYVSTEESPEELLENARS-FGWD 76 (260)
T ss_pred CCcHHHHHHHHHHHHHhcCCcEEEEEecCCHHHHHHHHHH-cCCC
Confidence 3899999999999988889999999999999999888854 5554
No 244
>COG4098 comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair]
Probab=22.65 E-value=2.6e+02 Score=24.10 Aligned_cols=57 Identities=19% Similarity=0.044 Sum_probs=48.4
Q ss_pred hccccHHHHHHHHhHHHhCCCeEEEEechhhHHHHHHHHHHhc--CCeEEEeeCCcccC
Q psy2047 175 VESGKLKKLDEILPDLKKNGHRVLIFSQFIFVLDILGHYMDIR--GWRHLRLDGATQVS 231 (233)
Q Consensus 175 ~~s~Kl~~l~~lL~~~~~~~~KvlIFSq~~~~Ld~l~~~l~~~--gi~~~rldG~~~~~ 231 (233)
..+||-+++.+-++.....|..|.|-|.-++.---|...|+.. ++...-++|+-+..
T Consensus 125 ~GaGKTEMif~~i~~al~~G~~vciASPRvDVclEl~~Rlk~aF~~~~I~~Lyg~S~~~ 183 (441)
T COG4098 125 TGAGKTEMIFQGIEQALNQGGRVCIASPRVDVCLELYPRLKQAFSNCDIDLLYGDSDSY 183 (441)
T ss_pred cCCCchhhhHHHHHHHHhcCCeEEEecCcccchHHHHHHHHHhhccCCeeeEecCCchh
Confidence 4489999999999999999999999999998887778888764 67888888886543
No 245
>PF06050 HGD-D: 2-hydroxyglutaryl-CoA dehydratase, D-component ; InterPro: IPR010327 Degradation of glutamate via the hydroxyglutarate pathway involves the syn-elimination of water from 2-hydroxyglutaryl-CoA. This anaerobic process is catalysed by 2-hydroxyglutaryl-CoA dehydratase, an enzyme with two components (A and D) that reversibly associate during reaction cycles. This component contains one non-reducible [4Fe-4S]2+ cluster and a reduced riboflavin 5'-monophosphate [].; PDB: 3O3O_B 3O3N_D 3O3M_D.
Probab=22.61 E-value=1.4e+02 Score=24.86 Aligned_cols=48 Identities=19% Similarity=0.310 Sum_probs=30.6
Q ss_pred ccHHHHHHHHhHHHhCCCeEEEEe-ch-----hhHHHHHHHHHHhc-CCeEEEeeCCc
Q psy2047 178 GKLKKLDEILPDLKKNGHRVLIFS-QF-----IFVLDILGHYMDIR-GWRHLRLDGAT 228 (233)
Q Consensus 178 ~Kl~~l~~lL~~~~~~~~KvlIFS-q~-----~~~Ld~l~~~l~~~-gi~~~rldG~~ 228 (233)
..+..+.+++++. +-..|||- ++ ......++..+.+. ||+++.++|+.
T Consensus 273 ~r~~~~~~~~~~~---~~dgvi~~~~~~C~~~~~~~~~l~~~~~~~~gIP~l~le~d~ 327 (349)
T PF06050_consen 273 RRIEYIDDLIEKY---GADGVIFHGHKGCDPYSYDQPLLKEALREFLGIPVLFLEGDY 327 (349)
T ss_dssp CHHHHHHHHHHHT---T-SEEEEEEETT-HHHHCCHHHHHHHHHCCHT--EEEEEE-T
T ss_pred hHHHHHHHHHHHh---CCCEEEEhHhcCCCcHHHHHHHHHHHHHHhcCCCeEeecccc
Confidence 4555555555554 43445554 33 35788999999999 99999999985
No 246
>PRK11784 tRNA 2-selenouridine synthase; Provisional
Probab=22.60 E-value=2.5e+02 Score=23.93 Aligned_cols=37 Identities=16% Similarity=0.205 Sum_probs=26.8
Q ss_pred CCCeEEEEechh-hHHHHHHHHHHhcCCeEEEeeCCcc
Q psy2047 193 NGHRVLIFSQFI-FVLDILGHYMDIRGWRHLRLDGATQ 229 (233)
Q Consensus 193 ~~~KvlIFSq~~-~~Ld~l~~~l~~~gi~~~rldG~~~ 229 (233)
.+.++||+|... .--......|...|++..+|+|+..
T Consensus 87 ~~~~ivvyC~rgG~RS~~aa~~L~~~G~~v~~L~GG~~ 124 (345)
T PRK11784 87 ANPRGLLYCWRGGLRSGSVQQWLKEAGIDVPRLEGGYK 124 (345)
T ss_pred CCCeEEEEECCCChHHHHHHHHHHHcCCCcEEEcCCHH
Confidence 456899998532 3344456788889999899999864
No 247
>PF03033 Glyco_transf_28: Glycosyltransferase family 28 N-terminal domain; InterPro: IPR004276 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 28 GT28 from CAZY comprises enzymes with a number of known activities; 1,2-diacylglycerol 3-beta-galactosyltransferase (2.4.1.46 from EC); 1,2-diacylglycerol 3-beta-glucosyltransferase (2.4.1.157 from EC); beta-N-acetylglucosamine transferase (2.4.1 from EC).; GO: 0016758 transferase activity, transferring hexosyl groups, 0005975 carbohydrate metabolic process, 0030259 lipid glycosylation; PDB: 2IYF_B 2YJN_A 2P6P_A 1PNV_A 3H4T_A 3H4I_A 1PN3_B 3IA7_B 1NLM_B 1F0K_B ....
Probab=22.53 E-value=1.7e+02 Score=20.34 Aligned_cols=47 Identities=15% Similarity=0.262 Sum_probs=34.6
Q ss_pred ccccHHHHHHHHhHHHhCCCeEEEEechhhHHHHHHHHHHhcCCeEEEeeCC
Q psy2047 176 ESGKLKKLDEILPDLKKNGHRVLIFSQFIFVLDILGHYMDIRGWRHLRLDGA 227 (233)
Q Consensus 176 ~s~Kl~~l~~lL~~~~~~~~KvlIFSq~~~~Ld~l~~~l~~~gi~~~rldG~ 227 (233)
..|-+.-++.+-+++...|+.|.+.+.- .+- ..+...|+++..+++.
T Consensus 8 t~Ghv~P~lala~~L~~rGh~V~~~~~~-~~~----~~v~~~Gl~~~~~~~~ 54 (139)
T PF03033_consen 8 TRGHVYPFLALARALRRRGHEVRLATPP-DFR----ERVEAAGLEFVPIPGD 54 (139)
T ss_dssp SHHHHHHHHHHHHHHHHTT-EEEEEETG-GGH----HHHHHTT-EEEESSSC
T ss_pred ChhHHHHHHHHHHHHhccCCeEEEeecc-cce----ecccccCceEEEecCC
Confidence 3567778888999999999999977663 333 3447789999999887
No 248
>PF02399 Herpes_ori_bp: Origin of replication binding protein; InterPro: IPR003450 This entry represents replication origin binding protein. It functions as a docking protein to recruit essential components of the viral replication machinery to viral DNA origins. In the presence of the major DNA-binding protein, it opens dsDNA which leads to a conformational change in the origin that facilitates DNA unwinding and subsequent replication [].; GO: 0003688 DNA replication origin binding, 0005524 ATP binding, 0006260 DNA replication
Probab=22.47 E-value=2.4e+02 Score=27.14 Aligned_cols=45 Identities=22% Similarity=0.207 Sum_probs=39.3
Q ss_pred hccccHHHHHHHHhHHH-hCCCeEEEEechhhHHHHHHHHHHhcCC
Q psy2047 175 VESGKLKKLDEILPDLK-KNGHRVLIFSQFIFVLDILGHYMDIRGW 219 (233)
Q Consensus 175 ~~s~Kl~~l~~lL~~~~-~~~~KvlIFSq~~~~Ld~l~~~l~~~gi 219 (233)
..|||-.++++.|+... ..+.++||.|.=++...-|...++..|+
T Consensus 58 MGTGKTtaLi~wLk~~l~~~~~~VLvVShRrSL~~sL~~rf~~~~l 103 (824)
T PF02399_consen 58 MGTGKTTALIRWLKDALKNPDKSVLVVSHRRSLTKSLAERFKKAGL 103 (824)
T ss_pred CCCCcHHHHHHHHHHhccCCCCeEEEEEhHHHHHHHHHHHHhhcCC
Confidence 34999999999998875 4567999999999999999999998876
No 249
>PTZ00222 60S ribosomal protein L7a; Provisional
Probab=22.32 E-value=2.3e+02 Score=23.03 Aligned_cols=36 Identities=6% Similarity=0.095 Sum_probs=29.2
Q ss_pred hCCCeEEEEechhhHHHH---HHHHHHhcCCeEEEeeCC
Q psy2047 192 KNGHRVLIFSQFIFVLDI---LGHYMDIRGWRHLRLDGA 227 (233)
Q Consensus 192 ~~~~KvlIFSq~~~~Ld~---l~~~l~~~gi~~~rldG~ 227 (233)
...-++||++.-++-.++ |...|+..|++|+.+-|.
T Consensus 146 kkKAkLVIIA~DVsPie~vk~LpaLCrk~~VPY~iVktK 184 (263)
T PTZ00222 146 KKQARMVVIANNVDPVELVLWMPNLCRANKIPYAIVKDM 184 (263)
T ss_pred cCCceEEEEeCCCCHHHHHHHHHHHHHhcCCCEEEECCH
Confidence 334599999999877766 678899999999988764
No 250
>TIGR00283 arch_pth2 peptidyl-tRNA hydrolase. This model describes an archaeal/eukaryotic form of peptidyl-tRNA hydrolase. Most bacterial forms are described by TIGR00447.
Probab=22.25 E-value=2.8e+02 Score=19.37 Aligned_cols=40 Identities=13% Similarity=0.052 Sum_probs=32.1
Q ss_pred HHHhHHHhCCC-eEEEEechhhHHHHHHHHHHhcCCeEEEe
Q psy2047 185 EILPDLKKNGH-RVLIFSQFIFVLDILGHYMDIRGWRHLRL 224 (233)
Q Consensus 185 ~lL~~~~~~~~-KvlIFSq~~~~Ld~l~~~l~~~gi~~~rl 224 (233)
+.++.|...|. |+++=......|.-|....+..|+.+..+
T Consensus 39 ~~~~~W~~~G~~KVvlk~~~~~el~~l~~~a~~~~l~~~~v 79 (115)
T TIGR00283 39 SLRRKWLDEGQKKVVLKVNSLEELLEIYHKAESLGLVTGLI 79 (115)
T ss_pred HHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHcCCCEEEE
Confidence 45677777776 78888888888888888999999987766
No 251
>PRK09751 putative ATP-dependent helicase Lhr; Provisional
Probab=22.23 E-value=1.4e+02 Score=30.85 Aligned_cols=24 Identities=8% Similarity=0.110 Sum_probs=20.7
Q ss_pred CCCeEEEEechhhHHHHHHHHHHh
Q psy2047 193 NGHRVLIFSQFIFVLDILGHYMDI 216 (233)
Q Consensus 193 ~~~KvlIFSq~~~~Ld~l~~~l~~ 216 (233)
.+.++|||++....-+.+...|.+
T Consensus 243 ~~~stLVFvNSR~~AE~La~~L~~ 266 (1490)
T PRK09751 243 RHRSTIVFTNSRGLAEKLTARLNE 266 (1490)
T ss_pred cCCCEEEECCCHHHHHHHHHHHHH
Confidence 457899999999999999888865
No 252
>PF14417 MEDS: MEDS: MEthanogen/methylotroph, DcmR Sensory domain
Probab=22.23 E-value=2e+02 Score=21.82 Aligned_cols=44 Identities=16% Similarity=0.061 Sum_probs=33.6
Q ss_pred cccHHHHHHHHhHHHhCCCeEEEEechhhHHHHHHHHHHhcCCe
Q psy2047 177 SGKLKKLDEILPDLKKNGHRVLIFSQFIFVLDILGHYMDIRGWR 220 (233)
Q Consensus 177 s~Kl~~l~~lL~~~~~~~~KvlIFSq~~~~Ld~l~~~l~~~gi~ 220 (233)
..-+..+...+..-...|++++++..-....+.+...|.+.|+.
T Consensus 30 ~e~~~~~~~Fi~~GL~~ge~~l~v~~~~~~~~~l~~~L~~~~~d 73 (191)
T PF14417_consen 30 EELLEVLVPFIREGLARGERCLYVAPDPRRVEELRDELRKAGPD 73 (191)
T ss_pred HHHHHHHHHHHHHHHHCCCeEEEEECCCCCHHHHHHHHHhcCCc
Confidence 34566777788887888999999998677777777888766543
No 253
>KOG1765|consensus
Probab=22.10 E-value=85 Score=23.56 Aligned_cols=55 Identities=15% Similarity=0.178 Sum_probs=30.8
Q ss_pred CCCchhhhhhhcchh-------hhhhhhhHHHHHHHHHhhhh---hhhhcchhhhhhcCCCceEE
Q psy2047 1 MDSDSEDDARYEDKR-------KEQATFEVEQVDQAKRIISP---FMLRRLKKDVLTELPKKTAL 55 (233)
Q Consensus 1 lg~~~~F~~~~~~~~-------~~~~~~~~~~~~~L~~~l~~---~~lRRtk~~~~~~LP~k~e~ 55 (233)
||.+-.|+...-++. +..+.+.....+.++.++.. +=--||-+.++.+||+-+-.
T Consensus 15 lGNllafd~n~l~~~~~~ss~a~~~~~l~~~~rdnvQ~lvN~l~~lp~~rt~e~vv~qLPe~Tt~ 79 (181)
T KOG1765|consen 15 LGNLLAFDRNPLDLLTLVSSGAEREKELNSLTRDNVQLLVNKLWSLPSKRTEEGVVVQLPEPTTR 79 (181)
T ss_pred cchhhhccCCcCccccccCCchhhhHHHHHHHHHHHHHHHHHHHhCcccccccceeEeCCCcccc
Confidence 688888888773322 22333334444444444444 43456666677788876543
No 254
>cd01446 DSP_MapKP N-terminal regulatory rhodanese domain of dual specificity phosphatases (DSP), such as Mapk Phosphatase. This domain is believed to determine substrate specificity by binding the substrate, such as ERK2, and activating the C-terminal catalytic domain by inducing a conformational change. This domain has homology to the Rhodanese Homology Domain.
Probab=21.90 E-value=1.4e+02 Score=20.86 Aligned_cols=37 Identities=11% Similarity=0.064 Sum_probs=25.9
Q ss_pred CCCeEEEEechhhH---------HHHHHHHHHh---cCCeEEEeeCCcc
Q psy2047 193 NGHRVLIFSQFIFV---------LDILGHYMDI---RGWRHLRLDGATQ 229 (233)
Q Consensus 193 ~~~KvlIFSq~~~~---------Ld~l~~~l~~---~gi~~~rldG~~~ 229 (233)
....|||+++.... +..+...|.. .+.+...|+|+..
T Consensus 74 ~~~~VVvYd~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~v~~L~GG~~ 122 (132)
T cd01446 74 ESLAVVVYDESSSDRERLREDSTAESVLGKLLRKLQEGCSVYLLKGGFE 122 (132)
T ss_pred CCCeEEEEeCCCcchhhccccchHHHHHHHHHHhcCCCceEEEEcchHH
Confidence 45699999998764 4455555554 4567888999864
No 255
>PRK00254 ski2-like helicase; Provisional
Probab=21.68 E-value=1.5e+02 Score=28.04 Aligned_cols=28 Identities=18% Similarity=0.223 Sum_probs=18.5
Q ss_pred HHHHhHHHhCCCeEEEEechhhHHHHHH
Q psy2047 184 DEILPDLKKNGHRVLIFSQFIFVLDILG 211 (233)
Q Consensus 184 ~~lL~~~~~~~~KvlIFSq~~~~Ld~l~ 211 (233)
..++.+....+.++|||+.....-..+.
T Consensus 228 ~~~~~~~i~~~~~vLVF~~sr~~~~~~a 255 (720)
T PRK00254 228 ESLVYDAVKKGKGALVFVNTRRSAEKEA 255 (720)
T ss_pred HHHHHHHHHhCCCEEEEEcChHHHHHHH
Confidence 3445455556789999998876554433
No 256
>PRK05320 rhodanese superfamily protein; Provisional
Probab=21.44 E-value=2.2e+02 Score=23.01 Aligned_cols=37 Identities=19% Similarity=0.152 Sum_probs=29.0
Q ss_pred CCCeEEEEechhhHHHHHHHHHHhcCCe-EEEeeCCcc
Q psy2047 193 NGHRVLIFSQFIFVLDILGHYMDIRGWR-HLRLDGATQ 229 (233)
Q Consensus 193 ~~~KvlIFSq~~~~Ld~l~~~l~~~gi~-~~rldG~~~ 229 (233)
.+.++++||..=.--......|+..|++ ...|.|++.
T Consensus 174 kdk~IvvyC~~G~Rs~~Aa~~L~~~Gf~~V~~L~GGi~ 211 (257)
T PRK05320 174 AGKTVVSFCTGGIRCEKAAIHMQEVGIDNVYQLEGGIL 211 (257)
T ss_pred CCCeEEEECCCCHHHHHHHHHHHHcCCcceEEeccCHH
Confidence 3568999999866666667788899996 678899864
No 257
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=21.05 E-value=2.6e+02 Score=20.64 Aligned_cols=44 Identities=16% Similarity=0.129 Sum_probs=31.5
Q ss_pred ccccHHHHHHHHhHHHhCCCeEEEEechhhHHHHHHHHHHhcCCe
Q psy2047 176 ESGKLKKLDEILPDLKKNGHRVLIFSQFIFVLDILGHYMDIRGWR 220 (233)
Q Consensus 176 ~s~Kl~~l~~lL~~~~~~~~KvlIFSq~~~~Ld~l~~~l~~~gi~ 220 (233)
.+||-.+..+++.....+|+++++||--.+.=++++. +...|++
T Consensus 9 G~GKT~l~~~~~~~~~~~g~~v~~~s~e~~~~~~~~~-~~~~g~~ 52 (187)
T cd01124 9 GTGKTTFALQFLYAGLARGEPGLYVTLEESPEELIEN-AESLGWD 52 (187)
T ss_pred CCCHHHHHHHHHHHHHHCCCcEEEEECCCCHHHHHHH-HHHcCCC
Confidence 3799999999999888889999999865444444443 3444554
No 258
>TIGR00643 recG ATP-dependent DNA helicase RecG.
Probab=20.74 E-value=2.5e+02 Score=26.01 Aligned_cols=57 Identities=14% Similarity=0.067 Sum_probs=38.7
Q ss_pred ccccHHHHHHHHhHHHhCCCeEEEEechhhHHHHHH----HHHHhcCCeEEEeeCCcccCC
Q psy2047 176 ESGKLKKLDEILPDLKKNGHRVLIFSQFIFVLDILG----HYMDIRGWRHLRLDGATQVSS 232 (233)
Q Consensus 176 ~s~Kl~~l~~lL~~~~~~~~KvlIFSq~~~~Ld~l~----~~l~~~gi~~~rldG~~~~~~ 232 (233)
.|||-.+..--+-.....|.+++|.+.-.....-+. ..+...|++...++|+++.++
T Consensus 266 GSGKT~va~l~il~~~~~g~qvlilaPT~~LA~Q~~~~~~~l~~~~gi~v~lltg~~~~~~ 326 (630)
T TIGR00643 266 GSGKTLVAALAMLAAIEAGYQVALMAPTEILAEQHYNSLRNLLAPLGIEVALLTGSLKGKR 326 (630)
T ss_pred CCcHHHHHHHHHHHHHHcCCcEEEECCHHHHHHHHHHHHHHHhcccCcEEEEEecCCCHHH
Confidence 488987654433333456789999988776555443 344445899999999987643
No 259
>COG0241 HisB Histidinol phosphatase and related phosphatases [Amino acid transport and metabolism]
Probab=20.67 E-value=2.9e+02 Score=21.15 Aligned_cols=37 Identities=14% Similarity=0.256 Sum_probs=28.1
Q ss_pred HHHHhHHHhCCCeEEEEec-------------hhhHHHHHHHHHHhcCCe
Q psy2047 184 DEILPDLKKNGHRVLIFSQ-------------FIFVLDILGHYMDIRGWR 220 (233)
Q Consensus 184 ~~lL~~~~~~~~KvlIFSq-------------~~~~Ld~l~~~l~~~gi~ 220 (233)
++.|..+...|=++||+|. |..+-+.+...|++.|+.
T Consensus 37 i~al~~l~~~gy~lVvvTNQsGi~rgyf~~~~f~~~~~~m~~~l~~~gv~ 86 (181)
T COG0241 37 IPALLKLQRAGYKLVVVTNQSGIGRGYFTEADFDKLHNKMLKILASQGVK 86 (181)
T ss_pred HHHHHHHHhCCCeEEEEECCCCccccCccHHHHHHHHHHHHHHHHHcCCc
Confidence 3445555567889999998 677888888899988863
No 260
>cd01821 Rhamnogalacturan_acetylesterase_like Rhamnogalacturan_acetylesterase_like subgroup of SGNH-hydrolases. Rhamnogalacturan acetylesterase removes acetyl esters from rhamnogalacturonan substrates, and renders them susceptible to degradation by rhamnogalacturonases. Rhamnogalacturonans are highly branched regions in pectic polysaccharides, consisting of repeating -(1,2)-L-Rha-(1,4)-D-GalUA disaccharide units, with many rhamnose residues substituted by neutral oligosaccharides such as arabinans, galactans and arabinogalactans. Extracellular enzymes participating in the degradation of plant cell wall polymers, such as Rhamnogalacturonan acetylesterase, would typically be found in saprophytic and plant pathogenic fungi and bacteria.
Probab=20.66 E-value=2.9e+02 Score=20.67 Aligned_cols=41 Identities=7% Similarity=0.124 Sum_probs=26.4
Q ss_pred HHHHhHHHhCCCeEEEEechh---------------hHHHHHHHHHHhcCCeEEEe
Q psy2047 184 DEILPDLKKNGHRVLIFSQFI---------------FVLDILGHYMDIRGWRHLRL 224 (233)
Q Consensus 184 ~~lL~~~~~~~~KvlIFSq~~---------------~~Ld~l~~~l~~~gi~~~rl 224 (233)
.++|..+.+.+.++|++|... ..-..+....++.|+.++-+
T Consensus 97 ~~ii~~~~~~~~~~il~tp~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~vD~ 152 (198)
T cd01821 97 RRYIAEARAKGATPILVTPVTRRTFDEGGKVEDTLGDYPAAMRELAAEEGVPLIDL 152 (198)
T ss_pred HHHHHHHHHCCCeEEEECCccccccCCCCcccccchhHHHHHHHHHHHhCCCEEec
Confidence 345555555677888876322 33567777777888887765
No 261
>KOG0351|consensus
Probab=20.65 E-value=73 Score=31.06 Aligned_cols=53 Identities=13% Similarity=0.051 Sum_probs=43.3
Q ss_pred HHHHHHHhHHHh--CCCeEEEEechhhHHHHHHHHHHhcCCeEEEeeCCcccCCC
Q psy2047 181 KKLDEILPDLKK--NGHRVLIFSQFIFVLDILGHYMDIRGWRHLRLDGATQVSSR 233 (233)
Q Consensus 181 ~~l~~lL~~~~~--~~~KvlIFSq~~~~Ld~l~~~l~~~gi~~~rldG~~~~~~R 233 (233)
..+..++..+.. .+.=.||+|....+.+-++..|...|+...-++++++.++|
T Consensus 470 ~~~~~~~~~~~~~~~~~s~IIYC~sr~~ce~vs~~L~~~~~~a~~YHAGl~~~~R 524 (941)
T KOG0351|consen 470 DALLDILEESKLRHPDQSGIIYCLSRKECEQVSAVLRSLGKSAAFYHAGLPPKER 524 (941)
T ss_pred cchHHHHHHhhhcCCCCCeEEEeCCcchHHHHHHHHHHhchhhHhhhcCCCHHHH
Confidence 444455555433 25688999999999999999999999999999999998776
No 262
>TIGR01459 HAD-SF-IIA-hyp4 HAD-superfamily class IIA hydrolase, TIGR01459. This hypothetical equivalog is a member of the Class IIA subfamily of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. The sequences modelled by this equivalog are all gram negative and primarily alpha proteobacteria. Only one sequence hase been annotated as other than "hypothetical." That one, from Brucella, is annotated as related to NagD, but only by sequence similarity and should be treated with some skepticism. (See comments for Class IIA subfamily)
Probab=20.56 E-value=1.8e+02 Score=22.97 Aligned_cols=39 Identities=15% Similarity=0.031 Sum_probs=22.7
Q ss_pred HHHHHHhHHHhCCCeEEEEechhhHHHHHHHHHHhcCCe
Q psy2047 182 KLDEILPDLKKNGHRVLIFSQFIFVLDILGHYMDIRGWR 220 (233)
Q Consensus 182 ~l~~lL~~~~~~~~KvlIFSq~~~~Ld~l~~~l~~~gi~ 220 (233)
-..+.|+.+.+.|.++.|.|.......-+...|...|+.
T Consensus 28 ga~e~L~~L~~~G~~~~ivTN~~~~~~~~~~~L~~~gl~ 66 (242)
T TIGR01459 28 GAVQNLNKIIAQGKPVYFVSNSPRNIFSLHKTLKSLGIN 66 (242)
T ss_pred cHHHHHHHHHHCCCEEEEEeCCCCChHHHHHHHHHCCCC
Confidence 344556666666667777766555444344556666654
No 263
>cd02430 PTH2 Peptidyl-tRNA hydrolase, type 2 (PTH2). Peptidyl-tRNA hydrolase (PTH) activity releases tRNA from the premature translation termination product peptidyl-tRNA, therefore allowing the tRNA and peptide to be reused in protein synthesis. PTH2 is present in archaea and eukaryotes.
Probab=20.48 E-value=3.1e+02 Score=19.16 Aligned_cols=40 Identities=15% Similarity=0.121 Sum_probs=31.0
Q ss_pred HHHhHHHhCCC-eEEEEechhhHHHHHHHHHHhcCCeEEEe
Q psy2047 185 EILPDLKKNGH-RVLIFSQFIFVLDILGHYMDIRGWRHLRL 224 (233)
Q Consensus 185 ~lL~~~~~~~~-KvlIFSq~~~~Ld~l~~~l~~~gi~~~rl 224 (233)
+.++.|...|. |+++=......|.-|...++..|+.+..+
T Consensus 39 ~~~~~W~~~G~~KiVl~~~~~~el~~l~~~a~~~~l~~~~v 79 (115)
T cd02430 39 ELLRAWEREGQKKIVLKVNSEEELLELKKKAKSLGLPTSLI 79 (115)
T ss_pred HHHHHHHhcCCcEEEEecCCHHHHHHHHHHHHHcCCCeEEE
Confidence 45677777776 66666677888888888889999997776
No 264
>PF12710 HAD: haloacid dehalogenase-like hydrolase; PDB: 3P96_A 3N28_A 3FVV_A 1RKU_A 1RKV_A 1Y8A_A 2FEA_B 3KD3_B.
Probab=20.45 E-value=1.2e+02 Score=22.50 Aligned_cols=37 Identities=27% Similarity=0.330 Sum_probs=27.4
Q ss_pred HHHHHhHHHhCCCeEEEEechhhHHHHHHHHHHhcCCeE
Q psy2047 183 LDEILPDLKKNGHRVLIFSQFIFVLDILGHYMDIRGWRH 221 (233)
Q Consensus 183 l~~lL~~~~~~~~KvlIFSq~~~~Ld~l~~~l~~~gi~~ 221 (233)
..++|+.+...|.+++|.|.. .-.+++..++..|++.
T Consensus 94 ~~e~i~~~~~~~~~v~IvS~~--~~~~i~~~~~~~~i~~ 130 (192)
T PF12710_consen 94 AMELIRELKDNGIKVVIVSGS--PDEIIEPIAERLGIDD 130 (192)
T ss_dssp HHHHHHHHHHTTSEEEEEEEE--EHHHHHHHHHHTTSSE
T ss_pred HHHHHHHHHHCCCEEEEECCC--cHHHHHHHHHHcCCCc
Confidence 346777777889999999887 4467777777777764
No 265
>PRK03094 hypothetical protein; Provisional
Probab=20.32 E-value=1.1e+02 Score=19.98 Aligned_cols=20 Identities=15% Similarity=0.345 Sum_probs=16.2
Q ss_pred HHHHHHHHHhcCCeEEEeeC
Q psy2047 207 LDILGHYMDIRGWRHLRLDG 226 (233)
Q Consensus 207 Ld~l~~~l~~~gi~~~rldG 226 (233)
|.-|..+|+.+|+..+.|.+
T Consensus 10 Ls~i~~~L~~~GYeVv~l~~ 29 (80)
T PRK03094 10 LTDVQQALKQKGYEVVQLRS 29 (80)
T ss_pred cHHHHHHHHHCCCEEEecCc
Confidence 55688899999998888865
No 266
>PF00162 PGK: Phosphoglycerate kinase; InterPro: IPR001576 Phosphoglycerate kinase (2.7.2.3 from EC) (PGK) is an enzyme that catalyses the formation of ATP to ADP and vice versa. In the second step of the second phase in glycolysis, 1,3-diphosphoglycerate is converted to 3-phosphoglycerate, forming one molecule of ATP. If the reverse were to occur, one molecule of ADP would be formed. This reaction is essential in most cells for the generation of ATP in aerobes, for fermentation in anaerobes and for carbon fixation in plants. PGK is found in all living organisms and its sequence has been highly conserved throughout evolution. The enzyme exists as a monomer containing two nearly equal-sized domains that correspond to the N- and C-termini of the protein (the last 15 C-terminal residues loop back into the N-terminal domain). 3-phosphoglycerate (3-PG) binds to the N-terminal, while the nucleotide substrates, MgATP or MgADP, bind to the C-terminal domain of the enzyme. This extended two-domain structure is associated with large-scale 'hinge-bending' conformational changes, similar to those found in hexokinase []. At the core of each domain is a 6-stranded parallel beta-sheet surrounded by alpha helices. Domain 1 has a parallel beta-sheet of six strands with an order of 342156, while domain 2 has a parallel beta-sheet of six strands with an order of 321456. Analysis of the reversible unfolding of yeast phosphoglycerate kinase leads to the conclusion that the two lobes are capable of folding independently, consistent with the presence of intermediates on the folding pathway with a single domain folded []. Phosphoglycerate kinase (PGK) deficiency is associated with haemolytic anaemia and mental disorders in man []. This group represents a phosphoglycerate kinase.; GO: 0004618 phosphoglycerate kinase activity, 0006096 glycolysis; PDB: 1PHP_A 1V6S_A 2IE8_A 1ZMR_A 16PK_A 13PK_B 2P9Q_A 2P9T_A 2PAA_B 3OZA_A ....
Probab=20.25 E-value=90 Score=27.01 Aligned_cols=34 Identities=12% Similarity=0.216 Sum_probs=26.7
Q ss_pred hhhccccHHHHHHHHhHHHhCCCeEEEEechhhH
Q psy2047 173 LVVESGKLKKLDEILPDLKKNGHRVLIFSQFIFV 206 (233)
Q Consensus 173 ~~~~s~Kl~~l~~lL~~~~~~~~KvlIFSq~~~~ 206 (233)
.+....++...+..|+.+.++|-|+||.|++-..
T Consensus 26 ~I~Dd~RI~~~lpTI~~l~~~gakvVl~sH~GRP 59 (384)
T PF00162_consen 26 KITDDTRIRAALPTIKYLLEKGAKVVLMSHLGRP 59 (384)
T ss_dssp EES-THHHHHHHHHHHHHHHTTEEEEEE---SST
T ss_pred cCCCcchHHHHHHHHHHHHhcCCeEEEEeccCCc
Confidence 4566899999999999999999999999998765
No 267
>KOG1321|consensus
Probab=20.20 E-value=1.6e+02 Score=24.87 Aligned_cols=41 Identities=32% Similarity=0.421 Sum_probs=29.3
Q ss_pred HHHhHHHhCC-CeEEEEechh--------hHHHHHHHHHHhcC----CeEEEee
Q psy2047 185 EILPDLKKNG-HRVLIFSQFI--------FVLDILGHYMDIRG----WRHLRLD 225 (233)
Q Consensus 185 ~lL~~~~~~~-~KvlIFSq~~--------~~Ld~l~~~l~~~g----i~~~rld 225 (233)
+.|+++.+.| .|+|+||||- +.|+.|...+...| +.+..||
T Consensus 144 ea~~qikkd~v~r~VafsqYPQyS~sTsGSSln~l~r~~r~~~~~~~~~wsiId 197 (395)
T KOG1321|consen 144 EALEQIKKDGVTRAVAFSQYPQYSCSTSGSSLNELWRQFREDGYERDIKWSIID 197 (395)
T ss_pred HHHHHHHhcCceeEEeeccCCceeeecCcccHHHHHHHHHhcCcccCCceEeec
Confidence 5566666555 5999999996 47899999887654 4454444
No 268
>COG0560 SerB Phosphoserine phosphatase [Amino acid transport and metabolism]
Probab=20.10 E-value=2.1e+02 Score=22.32 Aligned_cols=31 Identities=23% Similarity=0.424 Sum_probs=20.9
Q ss_pred HHHHhHHHhCCCeEEEEechhh-HHHHHHHHH
Q psy2047 184 DEILPDLKKNGHRVLIFSQFIF-VLDILGHYM 214 (233)
Q Consensus 184 ~~lL~~~~~~~~KvlIFSq~~~-~Ld~l~~~l 214 (233)
.+++..++..|.|++|+|-.-. ..+.|...|
T Consensus 83 ~elv~~lk~~G~~v~iiSgg~~~lv~~ia~~l 114 (212)
T COG0560 83 EELVAALKAAGAKVVIISGGFTFLVEPIAERL 114 (212)
T ss_pred HHHHHHHHHCCCEEEEEcCChHHHHHHHHHHh
Confidence 4667777888999999987655 334444443
No 269
>PRK10329 glutaredoxin-like protein; Provisional
Probab=20.10 E-value=2.5e+02 Score=17.94 Aligned_cols=16 Identities=19% Similarity=0.339 Sum_probs=8.6
Q ss_pred HHHHHHhcCCeEEEee
Q psy2047 210 LGHYMDIRGWRHLRLD 225 (233)
Q Consensus 210 l~~~l~~~gi~~~rld 225 (233)
...+|++.|++|..+|
T Consensus 17 ak~~L~~~gI~~~~id 32 (81)
T PRK10329 17 TKRAMESRGFDFEMIN 32 (81)
T ss_pred HHHHHHHCCCceEEEE
Confidence 4445555666655544
No 270
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=20.01 E-value=2.5e+02 Score=22.10 Aligned_cols=43 Identities=14% Similarity=0.107 Sum_probs=32.7
Q ss_pred ccccHHHHHHHHhHHHhCCCeEEEEechhhHHHHHHHHHHhcCC
Q psy2047 176 ESGKLKKLDEILPDLKKNGHRVLIFSQFIFVLDILGHYMDIRGW 219 (233)
Q Consensus 176 ~s~Kl~~l~~lL~~~~~~~~KvlIFSq~~~~Ld~l~~~l~~~gi 219 (233)
.++|-.+..+++.+...+|++++.||---..-++++.+ ...||
T Consensus 31 GsGKT~la~~~l~~~~~~ge~~lyvs~ee~~~~i~~~~-~~~g~ 73 (237)
T TIGR03877 31 GTGKSIFSQQFLWNGLQMGEPGIYVALEEHPVQVRRNM-AQFGW 73 (237)
T ss_pred CCCHHHHHHHHHHHHHHcCCcEEEEEeeCCHHHHHHHH-HHhCC
Confidence 38999999999987667899999999766666666553 44454
Done!