Query psy2047
Match_columns 233
No_of_seqs 123 out of 1043
Neff 9.7
Searched_HMMs 29240
Date Fri Aug 16 22:54:27 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy2047.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/2047hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1z3i_X Similar to RAD54-like; 99.9 1.9E-25 6.5E-30 200.9 17.2 196 1-233 250-455 (644)
2 1z5z_A Helicase of the SNF2/RA 99.9 9.4E-26 3.2E-30 182.5 8.8 139 37-233 13-152 (271)
3 3mwy_W Chromo domain-containin 99.9 4.2E-24 1.4E-28 196.4 11.5 172 22-233 440-611 (800)
4 3hgt_A HDA1 complex subunit 3; 99.9 4.9E-24 1.7E-28 173.6 9.3 137 49-230 20-161 (328)
5 1z63_A Helicase of the SNF2/RA 99.9 2.4E-21 8.1E-26 169.4 11.8 172 1-233 207-381 (500)
6 3dmq_A RNA polymerase-associat 98.3 8.4E-07 2.9E-11 83.2 6.2 58 174-233 485-543 (968)
7 2jgn_A DBX, DDX3, ATP-dependen 97.8 2.8E-05 9.4E-10 58.7 5.8 58 175-233 28-85 (185)
8 1wp9_A ATP-dependent RNA helic 97.8 2.3E-05 7.8E-10 67.0 5.3 59 175-233 340-408 (494)
9 2fwr_A DNA repair protein RAD2 97.7 2E-05 6.9E-10 67.9 4.3 146 28-233 237-383 (472)
10 1t5i_A C_terminal domain of A 97.7 3.8E-05 1.3E-09 57.1 4.7 56 176-233 15-70 (172)
11 2hjv_A ATP-dependent RNA helic 97.7 4.7E-05 1.6E-09 56.0 4.9 57 175-233 18-74 (163)
12 2rb4_A ATP-dependent RNA helic 97.5 7.5E-05 2.6E-09 55.6 4.2 55 177-233 19-73 (175)
13 2p6n_A ATP-dependent RNA helic 97.5 7.7E-05 2.6E-09 56.5 4.3 55 176-233 39-93 (191)
14 1fuk_A Eukaryotic initiation f 97.5 0.00011 3.9E-09 54.0 4.9 54 178-233 16-69 (165)
15 4a2p_A RIG-I, retinoic acid in 97.3 0.0002 7E-09 62.5 4.7 58 176-233 370-441 (556)
16 3eaq_A Heat resistant RNA depe 97.3 0.00029 1E-08 54.1 4.8 56 176-233 15-70 (212)
17 2yjt_D ATP-dependent RNA helic 96.3 5.8E-05 2E-09 55.9 0.0 55 177-233 15-69 (170)
18 3tbk_A RIG-I helicase domain; 97.1 0.0004 1.4E-08 60.6 5.1 58 176-233 369-440 (555)
19 4a2w_A RIG-I, retinoic acid in 97.0 0.00045 1.5E-08 64.6 4.6 58 176-233 611-682 (936)
20 4a2q_A RIG-I, retinoic acid in 97.0 0.00057 2E-08 62.8 4.9 58 176-233 611-682 (797)
21 3i32_A Heat resistant RNA depe 96.9 0.0011 3.6E-08 53.9 4.9 56 176-233 12-67 (300)
22 1xti_A Probable ATP-dependent 96.1 0.0061 2.1E-07 50.6 4.8 56 176-233 234-289 (391)
23 2ykg_A Probable ATP-dependent 96.1 0.0067 2.3E-07 54.6 5.4 58 176-233 378-449 (696)
24 4gl2_A Interferon-induced heli 96.0 0.0015 5.3E-08 58.8 0.8 58 176-233 379-453 (699)
25 2i4i_A ATP-dependent RNA helic 95.6 0.01 3.5E-07 49.7 4.4 57 176-233 259-315 (417)
26 1hv8_A Putative ATP-dependent 95.6 0.011 3.8E-07 48.4 4.4 55 176-233 223-277 (367)
27 1tf5_A Preprotein translocase 95.5 0.01 3.4E-07 54.3 4.0 56 176-231 414-469 (844)
28 1s2m_A Putative ATP-dependent 95.4 0.014 4.7E-07 48.7 4.5 57 175-233 241-297 (400)
29 2db3_A ATP-dependent RNA helic 95.3 0.015 5.1E-07 49.4 4.3 55 176-233 285-339 (434)
30 2j0s_A ATP-dependent RNA helic 95.2 0.017 5.8E-07 48.3 4.5 54 178-233 262-315 (410)
31 2fsf_A Preprotein translocase 95.0 0.017 5.8E-07 52.9 4.1 55 176-230 423-477 (853)
32 1nkt_A Preprotein translocase 94.9 0.022 7.7E-07 52.3 4.5 54 177-230 443-496 (922)
33 3jux_A Protein translocase sub 94.8 0.019 6.4E-07 51.9 3.6 54 176-229 456-509 (822)
34 3pey_A ATP-dependent RNA helic 94.7 0.023 8E-07 46.9 3.9 55 177-233 228-282 (395)
35 1c4o_A DNA nucleotide excision 94.7 0.038 1.3E-06 49.7 5.3 57 177-233 422-478 (664)
36 2d7d_A Uvrabc system protein B 94.4 0.043 1.5E-06 49.3 5.2 57 177-233 428-484 (661)
37 3fht_A ATP-dependent RNA helic 94.3 0.042 1.4E-06 45.7 4.6 55 177-233 251-305 (412)
38 3eiq_A Eukaryotic initiation f 94.2 0.019 6.6E-07 47.9 2.2 55 177-233 265-319 (414)
39 1oyw_A RECQ helicase, ATP-depe 94.1 0.053 1.8E-06 47.3 4.8 55 177-233 221-275 (523)
40 1fuu_A Yeast initiation factor 92.9 0.018 6.3E-07 47.6 0.0 54 178-233 245-298 (394)
41 2v1x_A ATP-dependent DNA helic 92.7 0.1 3.5E-06 46.3 4.4 41 193-233 266-306 (591)
42 2oca_A DAR protein, ATP-depend 92.6 0.12 4.2E-06 44.5 4.8 56 177-233 330-386 (510)
43 3sqw_A ATP-dependent RNA helic 91.7 0.18 6.2E-06 44.3 4.9 41 193-233 287-330 (579)
44 3fho_A ATP-dependent RNA helic 91.2 0.1 3.5E-06 45.2 2.7 55 177-233 342-396 (508)
45 3i5x_A ATP-dependent RNA helic 90.6 0.27 9.2E-06 42.9 4.9 41 193-233 338-381 (563)
46 3fmp_B ATP-dependent RNA helic 87.9 0.099 3.4E-06 44.8 0.0 55 177-233 318-372 (479)
47 3oiy_A Reverse gyrase helicase 86.2 0.76 2.6E-05 38.3 4.6 48 177-227 238-286 (414)
48 3o8b_A HCV NS3 protease/helica 85.8 0.91 3.1E-05 40.7 5.0 41 193-233 395-435 (666)
49 3h1t_A Type I site-specific re 84.9 0.8 2.7E-05 40.2 4.2 52 179-230 421-483 (590)
50 2eyq_A TRCF, transcription-rep 80.8 1.1 3.7E-05 43.0 3.6 55 178-233 797-853 (1151)
51 3g5j_A Putative ATP/GTP bindin 77.9 3.7 0.00013 27.9 4.9 51 178-229 73-125 (134)
52 2jlq_A Serine protease subunit 75.7 3.2 0.00011 35.1 4.8 39 191-229 185-223 (451)
53 1yks_A Genome polyprotein [con 75.0 3.1 0.00011 35.2 4.4 40 188-227 171-210 (440)
54 3gk5_A Uncharacterized rhodane 72.1 4.5 0.00015 26.7 3.9 37 193-229 54-90 (108)
55 2whx_A Serine protease/ntpase/ 70.8 4.7 0.00016 35.8 4.7 40 188-227 349-388 (618)
56 2xau_A PRE-mRNA-splicing facto 70.6 4.5 0.00015 37.0 4.7 55 179-233 286-353 (773)
57 4b3f_X DNA-binding protein smu 68.8 9.8 0.00034 33.8 6.4 50 176-225 215-264 (646)
58 2z83_A Helicase/nucleoside tri 67.4 6.1 0.00021 33.5 4.6 36 192-227 188-223 (459)
59 2z0m_A 337AA long hypothetical 67.1 1.4 4.9E-05 35.0 0.6 37 193-233 219-255 (337)
60 3ipz_A Monothiol glutaredoxin- 66.6 13 0.00044 24.5 5.3 40 185-225 9-54 (109)
61 3iwh_A Rhodanese-like domain p 64.2 5.8 0.0002 26.1 3.1 37 193-229 55-91 (103)
62 3foj_A Uncharacterized protein 63.9 6.5 0.00022 25.3 3.3 37 193-229 55-91 (100)
63 4ddu_A Reverse gyrase; topoiso 63.1 6.6 0.00022 37.5 4.3 47 177-226 295-342 (1104)
64 2v6i_A RNA helicase; membrane, 63.0 6.6 0.00023 33.0 4.0 37 192-228 169-205 (431)
65 1gm5_A RECG; helicase, replica 61.8 3 0.0001 38.1 1.7 57 177-233 561-628 (780)
66 2wv9_A Flavivirin protease NS2 61.6 6.8 0.00023 35.2 3.9 38 190-227 406-443 (673)
67 3zyw_A Glutaredoxin-3; metal b 61.2 19 0.00066 23.8 5.4 40 185-225 7-52 (111)
68 3eme_A Rhodanese-like domain p 60.2 7.4 0.00025 25.2 3.1 37 193-229 55-91 (103)
69 1wv9_A Rhodanese homolog TT165 59.1 11 0.00038 23.8 3.8 36 195-230 54-89 (94)
70 2va8_A SSO2462, SKI2-type heli 58.7 10 0.00035 34.0 4.7 34 184-217 242-275 (715)
71 2jtq_A Phage shock protein E; 57.5 24 0.00081 21.7 5.1 38 193-230 40-77 (85)
72 3anw_B GINS23, putative unchar 57.4 4.8 0.00016 29.3 1.8 54 26-80 114-168 (171)
73 3gx8_A Monothiol glutaredoxin- 55.7 34 0.0012 22.9 6.0 40 185-225 7-55 (121)
74 3hix_A ALR3790 protein; rhodan 55.3 13 0.00046 24.1 3.7 37 193-229 51-88 (106)
75 2p6r_A Afuhel308 helicase; pro 54.1 6.7 0.00023 35.2 2.6 32 185-216 233-264 (702)
76 2gk6_A Regulator of nonsense t 53.0 28 0.00097 30.7 6.4 53 175-227 204-257 (624)
77 2yan_A Glutaredoxin-3; oxidore 52.6 35 0.0012 21.9 5.5 40 185-225 8-53 (105)
78 3tg1_B Dual specificity protei 52.6 8.8 0.0003 27.2 2.6 36 194-229 93-137 (158)
79 1gmx_A GLPE protein; transfera 49.6 21 0.00071 23.2 4.0 37 193-229 57-94 (108)
80 2fsx_A RV0390, COG0607: rhodan 49.1 24 0.00083 24.4 4.5 37 193-229 79-116 (148)
81 2xgj_A ATP-dependent RNA helic 48.9 11 0.00037 35.6 3.2 38 182-219 330-368 (1010)
82 2zj8_A DNA helicase, putative 48.7 11 0.00038 33.8 3.2 28 189-216 232-259 (720)
83 3nhv_A BH2092 protein; alpha-b 48.7 17 0.00059 25.2 3.6 37 193-229 71-109 (144)
84 3flh_A Uncharacterized protein 48.2 10 0.00036 25.5 2.3 36 194-229 71-108 (124)
85 2ipc_A Preprotein translocase 48.0 22 0.00074 33.3 4.8 39 177-215 426-464 (997)
86 2wem_A Glutaredoxin-related pr 47.5 31 0.001 23.1 4.6 31 195-225 20-57 (118)
87 2hhg_A Hypothetical protein RP 46.0 17 0.00057 24.9 3.1 38 192-229 84-122 (139)
88 3rc3_A ATP-dependent RNA helic 45.9 9 0.00031 34.4 2.1 39 195-233 321-359 (677)
89 2k0z_A Uncharacterized protein 45.7 30 0.001 22.5 4.3 38 193-230 55-92 (110)
90 1tq1_A AT5G66040, senescence-a 45.4 17 0.00058 24.6 3.1 37 193-229 81-118 (129)
91 2xzl_A ATP-dependent helicase 45.3 38 0.0013 31.0 6.1 53 175-227 384-437 (802)
92 1gku_B Reverse gyrase, TOP-RG; 45.1 9 0.00031 36.3 2.0 50 176-229 260-309 (1054)
93 2hfv_A Hypothetical protein RP 42.5 36 0.0012 22.2 4.0 36 195-230 23-58 (97)
94 3l9o_A ATP-dependent RNA helic 41.6 13 0.00043 35.5 2.5 41 180-220 426-467 (1108)
95 1qxn_A SUD, sulfide dehydrogen 41.3 22 0.00074 24.4 3.1 37 193-229 81-118 (137)
96 2wjy_A Regulator of nonsense t 41.2 50 0.0017 30.2 6.2 52 176-227 381-433 (800)
97 3ilm_A ALR3790 protein; rhodan 40.4 30 0.001 23.9 3.8 37 193-229 55-92 (141)
98 2obb_A Hypothetical protein; s 39.7 44 0.0015 23.3 4.5 44 182-225 28-72 (142)
99 3tbk_A RIG-I helicase domain; 38.2 83 0.0029 26.5 7.0 56 176-231 29-93 (555)
100 2wci_A Glutaredoxin-4; redox-a 38.0 60 0.002 22.3 5.0 42 183-225 24-71 (135)
101 2wul_A Glutaredoxin related pr 37.3 55 0.0019 22.0 4.5 31 195-225 20-57 (118)
102 4a4z_A Antiviral helicase SKI2 36.9 23 0.00078 33.4 3.4 39 179-219 323-361 (997)
103 3oiy_A Reverse gyrase helicase 35.8 92 0.0032 25.3 6.7 55 176-230 46-103 (414)
104 1urh_A 3-mercaptopyruvate sulf 35.4 29 0.00099 26.9 3.4 49 181-229 72-123 (280)
105 1wik_A Thioredoxin-like protei 35.3 47 0.0016 21.5 4.0 33 194-226 14-52 (109)
106 3anw_A GINS51, putative unchar 35.0 40 0.0014 24.8 3.8 48 25-77 59-106 (188)
107 2xzm_U Ribosomal protein L7AE 35.0 1.1E+02 0.0036 20.8 5.9 41 187-227 33-76 (126)
108 1e0c_A Rhodanese, sulfurtransf 34.7 41 0.0014 25.8 4.1 49 181-229 67-118 (271)
109 2j6p_A SB(V)-AS(V) reductase; 34.7 62 0.0021 22.4 4.7 37 193-229 66-111 (152)
110 1vee_A Proline-rich protein fa 34.5 46 0.0016 22.5 3.9 37 193-229 73-110 (134)
111 1m45_B IQ2, IQ2 motif from MYO 33.7 38 0.0013 15.5 2.1 18 24-41 4-21 (26)
112 3d1p_A Putative thiosulfate su 33.4 35 0.0012 23.2 3.2 36 194-229 91-127 (139)
113 3hzu_A Thiosulfate sulfurtrans 33.0 52 0.0018 26.2 4.5 48 182-229 98-148 (318)
114 1o2d_A Alcohol dehydrogenase, 31.8 93 0.0032 25.3 6.0 59 167-228 16-79 (371)
115 1uar_A Rhodanese; sulfurtransf 31.5 55 0.0019 25.3 4.4 47 183-229 67-116 (285)
116 1wn2_A Peptidyl-tRNA hydrolase 31.5 1.2E+02 0.0041 20.4 6.5 40 185-224 45-85 (121)
117 1vlj_A NADH-dependent butanol 31.2 99 0.0034 25.6 6.1 56 171-229 22-83 (407)
118 3jyw_G 60S ribosomal protein L 31.1 52 0.0018 22.0 3.5 37 193-229 40-79 (113)
119 4a2p_A RIG-I, retinoic acid in 30.9 1E+02 0.0036 26.0 6.4 56 176-231 32-96 (556)
120 3v7e_A Ribosome-associated pro 30.7 96 0.0033 19.1 5.1 34 194-227 27-62 (82)
121 2j48_A Two-component sensor ki 29.7 90 0.0031 19.3 4.7 33 193-229 24-56 (119)
122 3sxu_A DNA polymerase III subu 29.4 77 0.0026 22.3 4.4 40 177-216 22-61 (150)
123 3iz5_H 60S ribosomal protein L 29.0 71 0.0024 24.7 4.3 42 187-228 135-180 (258)
124 3pct_A Class C acid phosphatas 28.4 1.1E+02 0.0038 23.7 5.5 41 181-221 104-146 (260)
125 1uar_A Rhodanese; sulfurtransf 28.3 70 0.0024 24.7 4.5 37 193-229 232-270 (285)
126 2fz4_A DNA repair protein RAD2 28.2 1.4E+02 0.0049 22.3 6.1 50 177-229 119-169 (237)
127 4a2q_A RIG-I, retinoic acid in 28.2 1.3E+02 0.0043 27.3 6.7 57 175-231 272-337 (797)
128 2guk_A Hypothetical protein PG 28.1 1.4E+02 0.0048 20.1 6.1 47 178-224 11-57 (120)
129 2lnd_A De novo designed protei 27.3 1.2E+02 0.004 18.9 6.2 56 174-229 31-88 (112)
130 3aay_A Putative thiosulfate su 27.2 81 0.0028 24.2 4.7 48 182-229 64-114 (277)
131 1t1v_A SH3BGRL3, SH3 domain-bi 26.8 39 0.0013 21.1 2.3 8 219-226 61-68 (93)
132 2j9r_A Thymidine kinase; TK1, 26.7 55 0.0019 24.7 3.4 30 176-205 38-67 (214)
133 2jvf_A De novo protein M7; tet 26.6 77 0.0026 19.2 3.3 26 202-227 61-88 (96)
134 2lsn_A Reverse transcriptase; 26.5 1.2E+02 0.0042 21.5 5.1 36 178-213 59-94 (165)
135 1xx6_A Thymidine kinase; NESG, 26.1 61 0.0021 23.7 3.5 28 176-203 18-45 (191)
136 1xty_A PTH, peptidyl-tRNA hydr 26.0 1.5E+02 0.0052 19.8 6.8 41 184-224 43-84 (120)
137 3ilx_A First ORF in transposon 25.6 1.2E+02 0.004 20.9 4.8 49 180-228 49-101 (143)
138 4ddu_A Reverse gyrase; topoiso 25.4 1.2E+02 0.004 29.0 6.1 56 175-230 102-160 (1104)
139 1rzw_A Protein AF2095(GR4); be 24.7 1.5E+02 0.005 20.1 5.0 40 185-224 38-78 (123)
140 2lbw_A H/ACA ribonucleoprotein 24.7 1.4E+02 0.0048 19.9 4.9 40 187-226 29-71 (121)
141 1byy_A Protein (sodium channel 24.6 44 0.0015 19.0 1.9 16 59-74 15-30 (53)
142 1u94_A RECA protein, recombina 24.5 2.3E+02 0.0078 22.9 7.0 53 175-227 72-150 (356)
143 3ocu_A Lipoprotein E; hydrolas 23.8 1.1E+02 0.0039 23.7 4.8 41 181-221 104-146 (262)
144 1v5x_A PRA isomerase, phosphor 23.7 1.2E+02 0.0041 22.4 4.8 47 181-229 40-86 (203)
145 3dmn_A Putative DNA helicase; 23.5 2E+02 0.0067 20.3 6.5 47 182-228 49-95 (174)
146 1wp9_A ATP-dependent RNA helic 22.9 1.1E+02 0.0039 24.9 5.1 55 176-230 33-92 (494)
147 3b6e_A Interferon-induced heli 22.8 1.5E+02 0.0051 21.1 5.3 55 177-231 59-123 (216)
148 2gmw_A D,D-heptose 1,7-bisphos 22.8 1.5E+02 0.005 21.5 5.2 38 183-220 55-105 (211)
149 2ct6_A SH3 domain-binding glut 22.7 61 0.0021 21.1 2.7 16 210-225 30-45 (111)
150 3fpn_A Geobacillus stearotherm 22.7 85 0.0029 21.1 3.4 36 192-228 17-57 (119)
151 3bbn_B Ribosomal protein S2; s 22.6 69 0.0024 24.4 3.3 52 177-228 47-100 (231)
152 2fpr_A Histidine biosynthesis 22.5 1.8E+02 0.0061 20.3 5.5 39 183-221 47-98 (176)
153 3lfu_A DNA helicase II; SF1 he 22.2 1.5E+02 0.005 25.9 5.8 49 180-229 330-381 (647)
154 3l8h_A Putative haloacid dehal 22.2 2E+02 0.0067 19.8 5.7 41 183-223 32-87 (179)
155 1rrm_A Lactaldehyde reductase; 21.4 1.6E+02 0.0054 24.0 5.5 51 177-229 16-70 (386)
156 3r15_A Factor H binding protei 21.4 55 0.0019 20.9 2.0 26 56-81 13-38 (93)
157 2xzm_B RPS0E; ribosome, transl 21.2 66 0.0022 24.8 2.9 51 177-228 50-103 (241)
158 3ox4_A Alcohol dehydrogenase 2 21.1 1.2E+02 0.0043 24.7 4.8 54 174-229 13-70 (383)
159 1qde_A EIF4A, translation init 21.1 1.8E+02 0.0062 21.0 5.5 55 176-230 61-122 (224)
160 1urh_A 3-mercaptopyruvate sulf 20.9 88 0.003 24.0 3.7 38 193-230 229-267 (280)
161 4a17_F RPL7A, 60S ribosomal pr 20.7 1.3E+02 0.0045 23.2 4.5 35 194-228 140-177 (255)
162 3aay_A Putative thiosulfate su 20.7 1.2E+02 0.004 23.2 4.4 47 183-229 214-263 (277)
163 2ouc_A Dual specificity protei 20.7 42 0.0014 22.6 1.6 36 194-229 83-127 (142)
164 2wlr_A Putative thiosulfate su 20.3 1.2E+02 0.0042 25.0 4.7 37 193-229 202-239 (423)
No 1
>1z3i_X Similar to RAD54-like; recombination ATPase helicase, recombination-DNA binding COM; 3.00A {Danio rerio} SCOP: c.37.1.19 c.37.1.19
Probab=99.93 E-value=1.9e-25 Score=200.86 Aligned_cols=196 Identities=21% Similarity=0.310 Sum_probs=148.2
Q ss_pred CCCchhhhhhhcchhhhhh---------hhhHHHHHHHHHhhhhhhhhcchhhhhhcCCCceEEEEEeeCCHHHHHHHHH
Q psy2047 1 MDSDSEDDARYEDKRKEQA---------TFEVEQVDQAKRIISPFMLRRLKKDVLTELPKKTALVIKVPMIPSQAEKYRG 71 (233)
Q Consensus 1 lg~~~~F~~~~~~~~~~~~---------~~~~~~~~~L~~~l~~~~lRRtk~~~~~~LP~k~e~~v~v~ls~~q~~lY~~ 71 (233)
||+..+|.++|..|+.... ..+.+++.+|+.++.|||+||+|+++...||+|++.+++|+||+.|+++|+.
T Consensus 250 l~~~~~F~~~f~~pi~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~lRR~k~~v~~~LP~k~~~~v~~~ls~~q~~lY~~ 329 (644)
T 1z3i_X 250 LGTAQEFKKRFEIPILKGRDADASDKDRAAGEQKLQELISIVNRCLIRRTSDILSKYLPVKIEQVVCCNLTPLQKELYKL 329 (644)
T ss_dssp HCCHHHHHHHTHHHHHHHHSTTCCSHHHHHHHHHHHHHHHHHHHHEECCCGGGGGGTSCCEEEEEEEECCCHHHHHHHHH
T ss_pred CCCHHHHHHhhcchhhhcCCcCCCHHHHHHHHHHHHHHHHHHHHHHHHhhHHhHhhhCCCceEEEEEeCCCHHHHHHHHH
Confidence 5888999999999876543 3345678999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhhcCCCCCCCCccchhhHHHHHHHHhhccccchhhccchhhHHHHHHhhhcCCCCCCCCchhhhhhhccCCchh
Q psy2047 72 LMEDFKKTANPEGSNRSNEISHMSMFMMLRKMANHPLGLRYYFQENTLREIADCLVEDPTYKGTNPQYILEDISWLSDYD 151 (233)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~l~~l~~Lr~~c~hp~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (233)
+.+........ .........+..++.||++||||.++..... ..+..... ..+ ..+
T Consensus 330 ~~~~~~~~~~~--~~g~~~~~~l~~l~~Lrk~c~hp~l~~~~~~-----------~~~~~~~~-----~~~---~~~--- 385 (644)
T 1z3i_X 330 FLKQAKPVESL--QTGKISVSSLSSITSLKKLCNHPALIYEKCL-----------TGEEGFDG-----ALD---LFP--- 385 (644)
T ss_dssp HHHHHCGGGSS--CTTCCCHHHHHHHHHHHHHHHCTHHHHHHHH-----------HTCTTCTT-----GGG---TSC---
T ss_pred HHHHHHHHHHH--hcCccchhHHHHHHHHHHHhCCHHHHHHHHh-----------cccchhhh-----HHh---hcc---
Confidence 98876543321 1223456788999999999999998753211 00100000 000 000
Q ss_pred hHhhhhcccccccccccCCchhhhccccHHHHHHHHhHHHh-CCCeEEEEechhhHHHHHHHHHHhcCCeEEEeeCCccc
Q psy2047 152 IHQLSLKHKTLDCAKYKVPDDLVVESGKLKKLDEILPDLKK-NGHRVLIFSQFIFVLDILGHYMDIRGWRHLRLDGATQV 230 (233)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~s~Kl~~l~~lL~~~~~-~~~KvlIFSq~~~~Ld~l~~~l~~~gi~~~rldG~~~~ 230 (233)
..+.........|+|+.++..++..+.. .++|+||||+|+.++++|+.+|...|+.|+++||+|+.
T Consensus 386 -------------~~~~~~~~~~~~s~K~~~l~~ll~~~~~~~~~k~lIFs~~~~~~~~l~~~l~~~g~~~~~l~G~~~~ 452 (644)
T 1z3i_X 386 -------------QNYSTKAVEPQLSGKMLVLDYILAMTRTTTSDKVVLVSNYTQTLDLFEKLCRNRRYLYVRLDGTMSI 452 (644)
T ss_dssp -------------SSCCSSSCCGGGSHHHHHHHHHHHHHHHHCCCEEEEEESCHHHHHHHHHHHHHHTCCEEEECSSCCH
T ss_pred -------------ccccccccCcccChHHHHHHHHHHHHhhcCCCEEEEEEccHHHHHHHHHHHHHCCCCEEEEeCCCCH
Confidence 0001111123459999999999998864 57899999999999999999999999999999999987
Q ss_pred CCC
Q psy2047 231 SSR 233 (233)
Q Consensus 231 ~~R 233 (233)
++|
T Consensus 453 ~~R 455 (644)
T 1z3i_X 453 KKR 455 (644)
T ss_dssp HHH
T ss_pred HHH
Confidence 654
No 2
>1z5z_A Helicase of the SNF2/RAD54 family; hydrolase, recombination, hydrolase-recombination complex; 2.00A {Sulfolobus solfataricus} SCOP: c.37.1.19
Probab=99.92 E-value=9.4e-26 Score=182.47 Aligned_cols=139 Identities=21% Similarity=0.302 Sum_probs=102.5
Q ss_pred hhhcchhhhhhcCCCceEEEEEeeCCHHHHHHHHHHHHHHhhhcCCCCCCCCccchhhHHHHHHHHhhccccchhhccch
Q psy2047 37 MLRRLKKDVLTELPKKTALVIKVPMIPSQAEKYRGLMEDFKKTANPEGSNRSNEISHMSMFMMLRKMANHPLGLRYYFQE 116 (233)
Q Consensus 37 ~lRRtk~~~~~~LP~k~e~~v~v~ls~~q~~lY~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~Lr~~c~hp~l~~~~~~~ 116 (233)
=+||+|+++..+||||++++++|+||+.|+++|+.+.+.....+... ........++..+++|||+|+||.++...
T Consensus 13 ~~rr~k~~v~~~LP~k~e~~v~v~ls~~Q~~~Y~~~~~~~~~~~~~~-~~~~~~~~~l~~l~~Lrq~~~hP~l~~~~--- 88 (271)
T 1z5z_A 13 GLVPRGSHMASDLPDKIETNVYCNLTPEQAAMYKAEVENLFNNIDSV-TGIKRKGMILSTLLKLKQIVDHPALLKGG--- 88 (271)
T ss_dssp ---------------CEEEEEEECCCHHHHHHHHHHHHHHHHHTTTC-CHHHHHHHHHHHHHHHHHHTTCTHHHHCS---
T ss_pred cccccHHHHHhhCCCCEEEEEEeCCCHHHHHHHHHHHHHHHHHHHhc-cccchHHHHHHHHHHHHHHcCCHHHhcCC---
Confidence 47999999999999999999999999999999999998876555421 11122356789999999999999987410
Q ss_pred hhHHHHHHhhhcCCCCCCCCchhhhhhhccCCchhhHhhhhcccccccccccCCchhhhccccHHHHHHHHhHHHhCCCe
Q psy2047 117 NTLREIADCLVEDPTYKGTNPQYILEDISWLSDYDIHQLSLKHKTLDCAKYKVPDDLVVESGKLKKLDEILPDLKKNGHR 196 (233)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~Kl~~l~~lL~~~~~~~~K 196 (233)
......|+|+..|.++|.++...++|
T Consensus 89 ------------------------------------------------------~~~~~~s~K~~~L~~ll~~~~~~~~k 114 (271)
T 1z5z_A 89 ------------------------------------------------------EQSVRRSGKMIRTMEIIEEALDEGDK 114 (271)
T ss_dssp ------------------------------------------------------CCCSTTCHHHHHHHHHHHHHHHTTCC
T ss_pred ------------------------------------------------------ccccccCHHHHHHHHHHHHHHhCCCe
Confidence 00124489999999999999888999
Q ss_pred EEEEechhhHHHHHHHHHHhc-CCeEEEeeCCcccCCC
Q psy2047 197 VLIFSQFIFVLDILGHYMDIR-GWRHLRLDGATQVSSR 233 (233)
Q Consensus 197 vlIFSq~~~~Ld~l~~~l~~~-gi~~~rldG~~~~~~R 233 (233)
+||||+|+.++++|+..|... |+++.+++|+++.++|
T Consensus 115 vlIFs~~~~~~~~l~~~L~~~~g~~~~~l~G~~~~~~R 152 (271)
T 1z5z_A 115 IAIFTQFVDMGKIIRNIIEKELNTEVPFLYGELSKKER 152 (271)
T ss_dssp EEEEESCHHHHHHHHHHHHHHHCSCCCEECTTSCHHHH
T ss_pred EEEEeccHHHHHHHHHHHHHhcCCcEEEEECCCCHHHH
Confidence 999999999999999999985 9999999999987654
No 3
>3mwy_W Chromo domain-containing protein 1; SWI2/SNF2 ATPase, double chromodomains, hydrolase; HET: ATG; 3.70A {Saccharomyces cerevisiae}
Probab=99.90 E-value=4.2e-24 Score=196.39 Aligned_cols=172 Identities=35% Similarity=0.571 Sum_probs=130.1
Q ss_pred hHHHHHHHHHhhhhhhhhcchhhhhhcCCCceEEEEEeeCCHHHHHHHHHHHHHHhhhcCCCCCCCCccchhhHHHHHHH
Q psy2047 22 EVEQVDQAKRIISPFMLRRLKKDVLTELPKKTALVIKVPMIPSQAEKYRGLMEDFKKTANPEGSNRSNEISHMSMFMMLR 101 (233)
Q Consensus 22 ~~~~~~~L~~~l~~~~lRRtk~~~~~~LP~k~e~~v~v~ls~~q~~lY~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~Lr 101 (233)
....+..|+.+++|+|+||+|.++...||++++.+++|+||+.|+++|+.++......+.. .......+++..++.||
T Consensus 440 ~~~~~~~L~~~l~p~~lRR~k~dv~~~LP~k~~~~v~v~ls~~q~~~Y~~i~~~~~~~l~~--~~~~~~~~~l~~l~~Lr 517 (800)
T 3mwy_W 440 QEEYIHDLHRRIQPFILRRLKKDVEKSLPSKTERILRVELSDVQTEYYKNILTKNYSALTA--GAKGGHFSLLNIMNELK 517 (800)
T ss_dssp HHHHHHHHHHTTGGGEEECCGGGGTTTSCCEEEEEEEECCCHHHHHHHHHHHHHCCC------------CTHHHHHHHHH
T ss_pred HHHHHHHHHHHHhHHHhhhhHHhhhhccCCcEEEEEEeCCCHHHHHHHHHHHHHHHHHHhh--ccccchhhHHHHHHHHH
Confidence 3456889999999999999999999999999999999999999999999998865544331 22344567899999999
Q ss_pred HhhccccchhhccchhhHHHHHHhhhcCCCCCCCCchhhhhhhccCCchhhHhhhhcccccccccccCCchhhhccccHH
Q psy2047 102 KMANHPLGLRYYFQENTLREIADCLVEDPTYKGTNPQYILEDISWLSDYDIHQLSLKHKTLDCAKYKVPDDLVVESGKLK 181 (233)
Q Consensus 102 ~~c~hp~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~Kl~ 181 (233)
++|+||+++..... ........ .... ........+..|+|+.
T Consensus 518 k~~~hp~l~~~~~~-----~~~~~~~~----~~~~-----------------------------~~~~~~~l~~~s~K~~ 559 (800)
T 3mwy_W 518 KASNHPYLFDNAEE-----RVLQKFGD----GKMT-----------------------------RENVLRGLIMSSGKMV 559 (800)
T ss_dssp HHHHCGGGSSSHHH-----HHCCCC--------CC-----------------------------SHHHHHHHHHTCHHHH
T ss_pred HHhcChhhhcchHH-----HHHHhccc----cccc-----------------------------HHHHHHHhhhcChHHH
Confidence 99999999753211 00000000 0000 0000113356699999
Q ss_pred HHHHHHhHHHhCCCeEEEEechhhHHHHHHHHHHhcCCeEEEeeCCcccCCC
Q psy2047 182 KLDEILPDLKKNGHRVLIFSQFIFVLDILGHYMDIRGWRHLRLDGATQVSSR 233 (233)
Q Consensus 182 ~l~~lL~~~~~~~~KvlIFSq~~~~Ld~l~~~l~~~gi~~~rldG~~~~~~R 233 (233)
+|.++|..+...|+|+||||||+.++++|+.+|...|++|.+|||+|+.++|
T Consensus 560 ~L~~lL~~~~~~g~kvLIFsq~~~~ld~L~~~L~~~g~~~~~i~G~~~~~eR 611 (800)
T 3mwy_W 560 LLDQLLTRLKKDGHRVLIFSQMVRMLDILGDYLSIKGINFQRLDGTVPSAQR 611 (800)
T ss_dssp HHHHHHHHHTTTTCCEEEEESCHHHHHHHHHHHHHHTCCCEEESTTSCHHHH
T ss_pred HHHHHHHHHhhCCCeEEEEechHHHHHHHHHHHHhCCCCEEEEeCCCCHHHH
Confidence 9999999999999999999999999999999999999999999999987654
No 4
>3hgt_A HDA1 complex subunit 3; RECA-like domain, SWI2/SNF2 helical domain, chromatin regulator, coiled coil, nucleus, repressor, transcription; 2.20A {Saccharomyces cerevisiae} PDB: 3hgq_A
Probab=99.90 E-value=4.9e-24 Score=173.63 Aligned_cols=137 Identities=17% Similarity=0.083 Sum_probs=100.5
Q ss_pred CCCceEEEEEeeCCHHHHHHHHHHHHHHhhhcC----CCCCCC-CccchhhHHHHHHHHhhccccchhhccchhhHHHHH
Q psy2047 49 LPKKTALVIKVPMIPSQAEKYRGLMEDFKKTAN----PEGSNR-SNEISHMSMFMMLRKMANHPLGLRYYFQENTLREIA 123 (233)
Q Consensus 49 LP~k~e~~v~v~ls~~q~~lY~~~~~~~~~~~~----~~~~~~-~~~~~~l~~l~~Lr~~c~hp~l~~~~~~~~~~~~~~ 123 (233)
-|++.|++++|+||+.|+++|+.++......+. ...... ....++..++++||++||||+|+...+.+...
T Consensus 20 ~~~~~E~~Lpv~Ms~~QK~lY~~il~~~~~~I~~~~~~~~~~~~~~~~sl~nli~qLRkicnHP~L~~d~~~p~~~---- 95 (328)
T 3hgt_A 20 GNTSGDYWLPTTMSLYQKELTDQIVSLHYSDILRYFETSHYKEDVILESMKTMCLNGSLVATHPYLLIDHYMPKSL---- 95 (328)
T ss_dssp --CCSEEEEEECCCHHHHHHHHHHHHHTHHHHHHHHHTTTTCCHHHHHHHHHHHHHHHHHHHCGGGTCCTTCCSCS----
T ss_pred CCCCceEEEecCCCHHHHHHHHHHHHhhHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHcCChhhhccccCCccc----
Confidence 399999999999999999999999864332221 111111 11235568899999999999998421110000
Q ss_pred HhhhcCCCCCCCCchhhhhhhccCCchhhHhhhhcccccccccccCCchhhhccccHHHHHHHHhHHHhCCCeEEEEech
Q psy2047 124 DCLVEDPTYKGTNPQYILEDISWLSDYDIHQLSLKHKTLDCAKYKVPDDLVVESGKLKKLDEILPDLKKNGHRVLIFSQF 203 (233)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~Kl~~l~~lL~~~~~~~~KvlIFSq~ 203 (233)
. .....+.++..|||+.+|.++|..+.+.|+|||||||+
T Consensus 96 ---------~--------------------------------~~~~~~~l~~~SGKf~~L~~LL~~l~~~~~kVLIfsq~ 134 (328)
T 3hgt_A 96 ---------I--------------------------------TRDVPAHLAENSGKFSVLRDLINLVQEYETETAIVCRP 134 (328)
T ss_dssp ---------C--------------------------------STTHHHHHHHTCHHHHHHHHHHHHHTTSCEEEEEEECS
T ss_pred ---------c--------------------------------ccchhhHHHHcCccHHHHHHHHHHHHhCCCEEEEEECC
Confidence 0 00001234567999999999999999999999999999
Q ss_pred hhHHHHHHHHHHhcCCeEEEeeCCccc
Q psy2047 204 IFVLDILGHYMDIRGWRHLRLDGATQV 230 (233)
Q Consensus 204 ~~~Ld~l~~~l~~~gi~~~rldG~~~~ 230 (233)
+.|||+||.+|..+|+.|.|+||++..
T Consensus 135 t~~LDilE~~l~~~~~~y~RlDG~~~~ 161 (328)
T 3hgt_A 135 GRTMDLLEALLLGNKVHIKRYDGHSIK 161 (328)
T ss_dssp THHHHHHHHHHTTSSCEEEESSSCCC-
T ss_pred hhHHHHHHHHHhcCCCceEeCCCCchh
Confidence 999999999999999999999999543
No 5
>1z63_A Helicase of the SNF2/RAD54 hamily; protein-DNA complex, hydrolase/DNA complex complex; 3.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 c.37.1.19 PDB: 1z6a_A
Probab=99.85 E-value=2.4e-21 Score=169.44 Aligned_cols=172 Identities=25% Similarity=0.381 Sum_probs=142.1
Q ss_pred CCCchhhhhhhcchhhhhhhhhHHHHHHHHHhhhhhhhhcchhh--hhhcCCCceEEEEEeeCCHHHHHHHHHHHHHHhh
Q psy2047 1 MDSDSEDDARYEDKRKEQATFEVEQVDQAKRIISPFMLRRLKKD--VLTELPKKTALVIKVPMIPSQAEKYRGLMEDFKK 78 (233)
Q Consensus 1 lg~~~~F~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~lRRtk~~--~~~~LP~k~e~~v~v~ls~~q~~lY~~~~~~~~~ 78 (233)
+|+..+|.++|..|.... +......|+.+++|+++||+|.+ +..+||++.+.+++|+|++.|+++|+.+.+....
T Consensus 207 ~~~~~~f~~~~~~~~~~~---~~~~~~~l~~~l~~~~lrr~k~~~~~~~~lp~~~~~~v~~~l~~~~~~~y~~~~~~~~~ 283 (500)
T 1z63_A 207 LGSYSEFKSKFATPIKKG---DNMAKEELKAIISPFILRRTKYDKAIINDLPDKIETNVYCNLTPEQAAMYKAEVENLFN 283 (500)
T ss_dssp TCCHHHHHTTTHHHHHTT---CHHHHHHHHHHHTTTEECCCTTCHHHHTTSCSEEEEEEEECCCHHHHHHHHHHHHHHTT
T ss_pred CCCHHHHHHHhccccccc---cHHHHHHHHHHHhhHeeeecccccchhhcCCCCeEEEEEcCCCHHHHHHHHHHHHHHHH
Confidence 578899999999988763 34667889999999999999976 5668999999999999999999999999887665
Q ss_pred hcCCCCCCCCccchhhHHHHHHHHhhccccchhhccchhhHHHHHHhhhcCCCCCCCCchhhhhhhccCCchhhHhhhhc
Q psy2047 79 TANPEGSNRSNEISHMSMFMMLRKMANHPLGLRYYFQENTLREIADCLVEDPTYKGTNPQYILEDISWLSDYDIHQLSLK 158 (233)
Q Consensus 79 ~~~~~~~~~~~~~~~l~~l~~Lr~~c~hp~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (233)
.+... ........++..++.||++|+||.++...
T Consensus 284 ~~~~~-~~~~~~~~~~~~l~~lr~~~~~p~l~~~~--------------------------------------------- 317 (500)
T 1z63_A 284 NIDSV-TGIKRKGMILSTLLKLKQIVDHPALLKGG--------------------------------------------- 317 (500)
T ss_dssp TTTTC-CTHHHHHHHHHHHHHHHHHTTCTHHHHCS---------------------------------------------
T ss_pred HHHhh-hcccchHHHHHHHHHHHHHhCCHHHhcCc---------------------------------------------
Confidence 44321 12233456788999999999999876421
Q ss_pred ccccccccccCCchhhhccccHHHHHHHHhHHHhCCCeEEEEechhhHHHHHHHHHHhc-CCeEEEeeCCcccCCC
Q psy2047 159 HKTLDCAKYKVPDDLVVESGKLKKLDEILPDLKKNGHRVLIFSQFIFVLDILGHYMDIR-GWRHLRLDGATQVSSR 233 (233)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~s~Kl~~l~~lL~~~~~~~~KvlIFSq~~~~Ld~l~~~l~~~-gi~~~rldG~~~~~~R 233 (233)
......|+|+..+.++|.++...++|+||||+|+.+++.|+..|... |+.+.+++|+++.++|
T Consensus 318 ------------~~~~~~s~K~~~l~~~l~~~~~~~~k~lvF~~~~~~~~~l~~~l~~~~~~~~~~~~g~~~~~~R 381 (500)
T 1z63_A 318 ------------EQSVRRSGKMIRTMEIIEEALDEGDKIAIFTQFVDMGKIIRNIIEKELNTEVPFLYGELSKKER 381 (500)
T ss_dssp ------------CCCSTTCHHHHHHHHHHHHHHTTTCCEEEECSCHHHHHHHHHHHHHHHTCCCCEEETTSCHHHH
T ss_pred ------------cchhhcchhHHHHHHHHHHHHccCCcEEEEEehHHHHHHHHHHHHHhhCCCeEEEECCCCHHHH
Confidence 00123489999999999999888999999999999999999999986 9999999999987654
No 6
>3dmq_A RNA polymerase-associated protein RAPA; SWF2/SNF2, transcription factor, RNA polymerase recycling, activator, ATP-binding, DNA-binding; 3.20A {Escherichia coli K12}
Probab=98.28 E-value=8.4e-07 Score=83.19 Aligned_cols=58 Identities=14% Similarity=0.097 Sum_probs=51.6
Q ss_pred hhccccHHHHHHHHhHHHhCCCeEEEEechhhHHHHHHHHHHh-cCCeEEEeeCCcccCCC
Q psy2047 174 VVESGKLKKLDEILPDLKKNGHRVLIFSQFIFVLDILGHYMDI-RGWRHLRLDGATQVSSR 233 (233)
Q Consensus 174 ~~~s~Kl~~l~~lL~~~~~~~~KvlIFSq~~~~Ld~l~~~l~~-~gi~~~rldG~~~~~~R 233 (233)
...+.|+..+.+++.. ..+.|+||||+++.+.+.|...|.. .|+++..++|+|+..+|
T Consensus 485 ~~~~~K~~~L~~ll~~--~~~~k~iVF~~~~~~~~~l~~~L~~~~g~~~~~lhG~~~~~~R 543 (968)
T 3dmq_A 485 WNFDPRVEWLMGYLTS--HRSQKVLVICAKAATALQLEQVLREREGIRAAVFHEGMSIIER 543 (968)
T ss_dssp TTTSHHHHHHHHHHHH--TSSSCCCEECSSTHHHHHHHHHHHTTTCCCEEEECTTSCTTHH
T ss_pred cCccHHHHHHHHHHHh--CCCCCEEEEeCcHHHHHHHHHHHHHHcCCcEEEEeCCCCHHHH
Confidence 4558999999999987 4578999999999999999999994 69999999999998765
No 7
>2jgn_A DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosphorylation, nucleotide-binding, hydrolase, RNA-binding, ATP-binding, DNA-binding, nuclear protein; 1.91A {Homo sapiens}
Probab=97.82 E-value=2.8e-05 Score=58.66 Aligned_cols=58 Identities=21% Similarity=0.226 Sum_probs=44.7
Q ss_pred hccccHHHHHHHHhHHHhCCCeEEEEechhhHHHHHHHHHHhcCCeEEEeeCCcccCCC
Q psy2047 175 VESGKLKKLDEILPDLKKNGHRVLIFSQFIFVLDILGHYMDIRGWRHLRLDGATQVSSR 233 (233)
Q Consensus 175 ~~s~Kl~~l~~lL~~~~~~~~KvlIFSq~~~~Ld~l~~~l~~~gi~~~rldG~~~~~~R 233 (233)
..+.|+..|.++|... ..+.|+|||+++....+.|...|...|+.+..++|+++..+|
T Consensus 28 ~~~~K~~~L~~ll~~~-~~~~k~lVF~~~~~~~~~l~~~L~~~g~~~~~lhg~~~~~~r 85 (185)
T 2jgn_A 28 EESDKRSFLLDLLNAT-GKDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDR 85 (185)
T ss_dssp CGGGHHHHHHHHHHHC--CCSCEEEEESCHHHHHHHHHHHHHTTCCEEEEC--------
T ss_pred CcHHHHHHHHHHHHhc-CCCCeEEEEECCHHHHHHHHHHHHHcCCceEEEeCCCCHHHH
Confidence 3478999999999874 246799999999999999999999999999999999998765
No 8
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=97.78 E-value=2.3e-05 Score=66.97 Aligned_cols=59 Identities=17% Similarity=0.320 Sum_probs=50.3
Q ss_pred hccccHHHHHHHHhHHH--hCCCeEEEEechhhHHHHHHHHHHhcCCeEEEeeC--------CcccCCC
Q psy2047 175 VESGKLKKLDEILPDLK--KNGHRVLIFSQFIFVLDILGHYMDIRGWRHLRLDG--------ATQVSSR 233 (233)
Q Consensus 175 ~~s~Kl~~l~~lL~~~~--~~~~KvlIFSq~~~~Ld~l~~~l~~~gi~~~rldG--------~~~~~~R 233 (233)
..++|+..+.++|.+.. ..+.|+|||++++.+++.|...|...|+.+.+++| +++..+|
T Consensus 340 ~~~~k~~~l~~~l~~~~~~~~~~k~lVF~~~~~~~~~l~~~L~~~~~~~~~~~g~~~~~~~~~~~~~~r 408 (494)
T 1wp9_A 340 LDHPKMDKLKEIIREQLQRKQNSKIIVFTNYRETAKKIVNELVKDGIKAKRFVGQASKENDRGLSQREQ 408 (494)
T ss_dssp CSCHHHHHHHHHHHHHHHHCTTCCEEEECSCHHHHHHHHHHHHHTTCCEEEECCSSCC-------CCHH
T ss_pred CCChHHHHHHHHHHHHhccCCCCeEEEEEccHHHHHHHHHHHHHcCCCcEEEeccccccccccCCHHHH
Confidence 45889999999999876 45789999999999999999999999999999999 7776654
No 9
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A*
Probab=97.73 E-value=2e-05 Score=67.88 Aligned_cols=146 Identities=14% Similarity=0.149 Sum_probs=87.3
Q ss_pred HHHHhhhhhhhhcchhhhhhc-CCCceEEEEEeeCCHHHHHHHHHHHHHHhhhcCCCCCCCCccchhhHHHHHHHHhhcc
Q psy2047 28 QAKRIISPFMLRRLKKDVLTE-LPKKTALVIKVPMIPSQAEKYRGLMEDFKKTANPEGSNRSNEISHMSMFMMLRKMANH 106 (233)
Q Consensus 28 ~L~~~l~~~~lRRtk~~~~~~-LP~k~e~~v~v~ls~~q~~lY~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~Lr~~c~h 106 (233)
.|..++.|.+.++...++... +|+.....+.+++++.++..|+.+.......+............+-..+. .....
T Consensus 237 ~l~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~---~~~~~ 313 (472)
T 2fwr_A 237 ILKEVVGGKVFELFPDSLAGKHLAKYTIKRIFVPLAEDERVEYEKREKVYKQFLRARGITLRRAEDFNKIVM---ASGYD 313 (472)
T ss_dssp SHHHHTCCEEEECCHHHHTSCCCCSEEECCEEECCCHHHHHHTTTTTHHHHSCSSSCCCTTTCCSSSTTTTT---TTCCS
T ss_pred HHHHHhCCeEeecCHHHHhcCcCCCeEEEEEEcCCCHHHHHHHHHHHHHHHHHHHhcCccccchhhHHHHHH---HhccC
Confidence 467778888888877776444 88888889999999999999998877666444321100000000000000 00000
Q ss_pred ccchhhccchhhHHHHHHhhhcCCCCCCCCchhhhhhhccCCchhhHhhhhcccccccccccCCchhhhccccHHHHHHH
Q psy2047 107 PLGLRYYFQENTLREIADCLVEDPTYKGTNPQYILEDISWLSDYDIHQLSLKHKTLDCAKYKVPDDLVVESGKLKKLDEI 186 (233)
Q Consensus 107 p~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~Kl~~l~~l 186 (233)
+.. . ....... ... .-....+.|+..+.++
T Consensus 314 ~~~-----------------------~---~~~~~~~-------~~~-----------------~~~~~~~~k~~~l~~~ 343 (472)
T 2fwr_A 314 ERA-----------------------Y---EALRAWE-------EAR-----------------RIAFNSKNKIRKLREI 343 (472)
T ss_dssp SSS-----------------------S---TTTHHHH-------HHH-----------------HHHHSCSHHHHHHHHH
T ss_pred HHH-----------------------H---HHHHHHH-------HHH-----------------HHhhcChHHHHHHHHH
Confidence 000 0 0000000 000 0012347899999999
Q ss_pred HhHHHhCCCeEEEEechhhHHHHHHHHHHhcCCeEEEeeCCcccCCC
Q psy2047 187 LPDLKKNGHRVLIFSQFIFVLDILGHYMDIRGWRHLRLDGATQVSSR 233 (233)
Q Consensus 187 L~~~~~~~~KvlIFSq~~~~Ld~l~~~l~~~gi~~~rldG~~~~~~R 233 (233)
|.. ..+.|+|||++++.+++.|...|. +..++|+++..+|
T Consensus 344 l~~--~~~~k~lvF~~~~~~~~~l~~~l~-----~~~~~g~~~~~~R 383 (472)
T 2fwr_A 344 LER--HRKDKIIIFTRHNELVYRISKVFL-----IPAITHRTSREER 383 (472)
T ss_dssp HHH--TSSSCBCCBCSCHHHHHHHHHHTT-----CCBCCSSSCSHHH
T ss_pred HHh--CCCCcEEEEECCHHHHHHHHHHhC-----cceeeCCCCHHHH
Confidence 987 457899999999999999999884 4468899876543
No 10
>1t5i_A C_terminal domain of A probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; 1.90A {Homo sapiens} SCOP: c.37.1.19
Probab=97.69 E-value=3.8e-05 Score=57.12 Aligned_cols=56 Identities=18% Similarity=0.224 Sum_probs=49.8
Q ss_pred ccccHHHHHHHHhHHHhCCCeEEEEechhhHHHHHHHHHHhcCCeEEEeeCCcccCCC
Q psy2047 176 ESGKLKKLDEILPDLKKNGHRVLIFSQFIFVLDILGHYMDIRGWRHLRLDGATQVSSR 233 (233)
Q Consensus 176 ~s~Kl~~l~~lL~~~~~~~~KvlIFSq~~~~Ld~l~~~l~~~gi~~~rldG~~~~~~R 233 (233)
.+.|+..|.++|+.. .+.|+|||+++....+.+...|...|+.+..++|+++..+|
T Consensus 15 ~~~K~~~L~~ll~~~--~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~hg~~~~~~r 70 (172)
T 1t5i_A 15 DNEKNRKLFDLLDVL--EFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEER 70 (172)
T ss_dssp GGGHHHHHHHHHHHS--CCSSEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHH
T ss_pred hHHHHHHHHHHHHhC--CCCcEEEEECCHHHHHHHHHHHHhcCCCEEEEECCCCHHHH
Confidence 467999999999864 45799999999999999999999999999999999987654
No 11
>2hjv_A ATP-dependent RNA helicase DBPA; parallel alpha-beta, hydrolase; 1.95A {Bacillus subtilis}
Probab=97.67 E-value=4.7e-05 Score=56.04 Aligned_cols=57 Identities=21% Similarity=0.266 Sum_probs=50.3
Q ss_pred hccccHHHHHHHHhHHHhCCCeEEEEechhhHHHHHHHHHHhcCCeEEEeeCCcccCCC
Q psy2047 175 VESGKLKKLDEILPDLKKNGHRVLIFSQFIFVLDILGHYMDIRGWRHLRLDGATQVSSR 233 (233)
Q Consensus 175 ~~s~Kl~~l~~lL~~~~~~~~KvlIFSq~~~~Ld~l~~~l~~~gi~~~rldG~~~~~~R 233 (233)
..+.|+..|.++|... .+.|+|||+++....+.+...|...|+.+..++|+++..+|
T Consensus 18 ~~~~K~~~L~~ll~~~--~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~hg~~~~~~r 74 (163)
T 2hjv_A 18 REENKFSLLKDVLMTE--NPDSCIIFCRTKEHVNQLTDELDDLGYPCDKIHGGMIQEDR 74 (163)
T ss_dssp CGGGHHHHHHHHHHHH--CCSSEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHH
T ss_pred ChHHHHHHHHHHHHhc--CCCcEEEEECCHHHHHHHHHHHHHcCCcEEEEeCCCCHHHH
Confidence 3478999999999763 46799999999999999999999999999999999987654
No 12
>2rb4_A ATP-dependent RNA helicase DDX25; rossmann fold, structural genomics, structural consortium, SGC, alternative initiation, ATP-binding, devel protein; 2.80A {Homo sapiens}
Probab=97.52 E-value=7.5e-05 Score=55.57 Aligned_cols=55 Identities=24% Similarity=0.172 Sum_probs=48.4
Q ss_pred cccHHHHHHHHhHHHhCCCeEEEEechhhHHHHHHHHHHhcCCeEEEeeCCcccCCC
Q psy2047 177 SGKLKKLDEILPDLKKNGHRVLIFSQFIFVLDILGHYMDIRGWRHLRLDGATQVSSR 233 (233)
Q Consensus 177 s~Kl~~l~~lL~~~~~~~~KvlIFSq~~~~Ld~l~~~l~~~gi~~~rldG~~~~~~R 233 (233)
..|+..|.+++... .+.|+|||+++....+.+...|...|+.+..++|+++..+|
T Consensus 19 ~~K~~~L~~ll~~~--~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~g~~~~~~R 73 (175)
T 2rb4_A 19 KDKYQALCNIYGSI--TIGQAIIFCQTRRNAKWLTVEMIQDGHQVSLLSGELTVEQR 73 (175)
T ss_dssp HHHHHHHHHHHTTS--CCSEEEEECSCHHHHHHHHHHHHTTTCCEEEECSSCCHHHH
T ss_pred HhHHHHHHHHHHhC--CCCCEEEEECCHHHHHHHHHHHHHcCCcEEEEeCCCCHHHH
Confidence 34999999988764 45699999999999999999999999999999999987654
No 13
>2p6n_A ATP-dependent RNA helicase DDX41; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; 2.60A {Homo sapiens}
Probab=97.52 E-value=7.7e-05 Score=56.49 Aligned_cols=55 Identities=25% Similarity=0.366 Sum_probs=48.5
Q ss_pred ccccHHHHHHHHhHHHhCCCeEEEEechhhHHHHHHHHHHhcCCeEEEeeCCcccCCC
Q psy2047 176 ESGKLKKLDEILPDLKKNGHRVLIFSQFIFVLDILGHYMDIRGWRHLRLDGATQVSSR 233 (233)
Q Consensus 176 ~s~Kl~~l~~lL~~~~~~~~KvlIFSq~~~~Ld~l~~~l~~~gi~~~rldG~~~~~~R 233 (233)
.+.|+..|.++|.. .+.|+|||+++....+.+...|...|+.+..++|+++..+|
T Consensus 39 ~~~K~~~L~~~l~~---~~~~~lVF~~~~~~~~~l~~~L~~~g~~~~~lhg~~~~~~R 93 (191)
T 2p6n_A 39 EEAKMVYLLECLQK---TPPPVLIFAEKKADVDAIHEYLLLKGVEAVAIHGGKDQEER 93 (191)
T ss_dssp GGGHHHHHHHHHTT---SCSCEEEECSCHHHHHHHHHHHHHHTCCEEEECTTSCHHHH
T ss_pred hHHHHHHHHHHHHh---CCCCEEEEECCHHHHHHHHHHHHHcCCcEEEEeCCCCHHHH
Confidence 46899999888865 35699999999999999999999999999999999987654
No 14
>1fuk_A Eukaryotic initiation factor 4A; helicase, DEAD-box protein, translation; 1.75A {Saccharomyces cerevisiae} SCOP: c.37.1.19
Probab=97.50 E-value=0.00011 Score=53.99 Aligned_cols=54 Identities=11% Similarity=0.090 Sum_probs=48.3
Q ss_pred ccHHHHHHHHhHHHhCCCeEEEEechhhHHHHHHHHHHhcCCeEEEeeCCcccCCC
Q psy2047 178 GKLKKLDEILPDLKKNGHRVLIFSQFIFVLDILGHYMDIRGWRHLRLDGATQVSSR 233 (233)
Q Consensus 178 ~Kl~~l~~lL~~~~~~~~KvlIFSq~~~~Ld~l~~~l~~~gi~~~rldG~~~~~~R 233 (233)
.|+..|.++++.. .+.|+|||+++....+.+...|...|+.+..++|+++..+|
T Consensus 16 ~K~~~l~~ll~~~--~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r 69 (165)
T 1fuk_A 16 YKYECLTDLYDSI--SVTQAVIFCNTRRKVEELTTKLRNDKFTVSAIYSDLPQQER 69 (165)
T ss_dssp GHHHHHHHHHHHT--TCSCEEEEESSHHHHHHHHHHHHHTTCCEEEECTTSCHHHH
T ss_pred hHHHHHHHHHHhC--CCCCEEEEECCHHHHHHHHHHHHHcCCCEEEEECCCCHHHH
Confidence 4999999999874 46799999999999999999999999999999999987554
No 15
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=97.28 E-value=0.0002 Score=62.53 Aligned_cols=58 Identities=24% Similarity=0.279 Sum_probs=37.4
Q ss_pred ccccHHHHHHHHhHHH--hCCCeEEEEechhhHHHHHHHHHHhc------------CCeEEEeeCCcccCCC
Q psy2047 176 ESGKLKKLDEILPDLK--KNGHRVLIFSQFIFVLDILGHYMDIR------------GWRHLRLDGATQVSSR 233 (233)
Q Consensus 176 ~s~Kl~~l~~lL~~~~--~~~~KvlIFSq~~~~Ld~l~~~l~~~------------gi~~~rldG~~~~~~R 233 (233)
.++|+..|.++|.+.. ..+.|+|||++++.+.+.|...|... |..+..++|+|+..+|
T Consensus 370 ~~~K~~~L~~~l~~~~~~~~~~k~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~R 441 (556)
T 4a2p_A 370 ENPKLEELVCILDDAYRYNPQTRTLLFAKTRALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQ 441 (556)
T ss_dssp CCHHHHHHHHHHHHHHHHCTTCCEEEEESSHHHHHHHHHHHTTCSGGGSCCEEC------------------
T ss_pred CChHHHHHHHHHHHHhcCCCCceEEEEEccHHHHHHHHHHHHhCCCcceeeeeEEEccCCcccccccCHHHH
Confidence 4889999999998765 45789999999999999999999876 6666677778888766
No 16
>3eaq_A Heat resistant RNA dependent ATPase; DEAD box RNA helicase, dimer, ATP-binding, helicase, hydrolase, nucleotide-binding; 2.30A {Thermus thermophilus} PDB: 3ear_A 3eas_A
Probab=97.26 E-value=0.00029 Score=54.14 Aligned_cols=56 Identities=18% Similarity=0.233 Sum_probs=49.8
Q ss_pred ccccHHHHHHHHhHHHhCCCeEEEEechhhHHHHHHHHHHhcCCeEEEeeCCcccCCC
Q psy2047 176 ESGKLKKLDEILPDLKKNGHRVLIFSQFIFVLDILGHYMDIRGWRHLRLDGATQVSSR 233 (233)
Q Consensus 176 ~s~Kl~~l~~lL~~~~~~~~KvlIFSq~~~~Ld~l~~~l~~~gi~~~rldG~~~~~~R 233 (233)
.+.|+.+|.+++.. ..+.++|||+......+.+...|...|+.+..++|+++..+|
T Consensus 15 ~~~k~~~l~~ll~~--~~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~lhg~~~~~~r 70 (212)
T 3eaq_A 15 VRGRLEVLSDLLYV--ASPDRAMVFTRTKAETEEIAQGLLRLGHPAQALHGDLSQGER 70 (212)
T ss_dssp TTSHHHHHHHHHHH--HCCSCEEEECSSHHHHHHHHHHHHHHTCCEEEECSSSCHHHH
T ss_pred HHHHHHHHHHHHHh--CCCCeEEEEeCCHHHHHHHHHHHHHcCCCEEEEECCCCHHHH
Confidence 37899999999975 346799999999999999999999999999999999987654
No 17
>2yjt_D ATP-dependent RNA helicase SRMB, regulator of ribonuclease activity A; hydrolase inhibitor-hydrolase complex, DEAD box RNA helicase; 2.90A {Escherichia coli}
Probab=96.25 E-value=5.8e-05 Score=55.92 Aligned_cols=55 Identities=18% Similarity=0.229 Sum_probs=49.1
Q ss_pred cccHHHHHHHHhHHHhCCCeEEEEechhhHHHHHHHHHHhcCCeEEEeeCCcccCCC
Q psy2047 177 SGKLKKLDEILPDLKKNGHRVLIFSQFIFVLDILGHYMDIRGWRHLRLDGATQVSSR 233 (233)
Q Consensus 177 s~Kl~~l~~lL~~~~~~~~KvlIFSq~~~~Ld~l~~~l~~~gi~~~rldG~~~~~~R 233 (233)
+.|+..|.++++.. .+.|+|||+++....+.+...|...|+.+..++|+++..+|
T Consensus 15 ~~k~~~l~~ll~~~--~~~~~iVF~~~~~~~~~l~~~L~~~~~~~~~~~g~~~~~~r 69 (170)
T 2yjt_D 15 EHKTALLVHLLKQP--EATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKR 69 (170)
Confidence 67999998888763 45799999999999999999999999999999999988765
No 18
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=97.15 E-value=0.0004 Score=60.56 Aligned_cols=58 Identities=14% Similarity=0.210 Sum_probs=37.9
Q ss_pred ccccHHHHHHHHhHHHhC--CCeEEEEechhhHHHHHHHHHHhcC------------CeEEEeeCCcccCCC
Q psy2047 176 ESGKLKKLDEILPDLKKN--GHRVLIFSQFIFVLDILGHYMDIRG------------WRHLRLDGATQVSSR 233 (233)
Q Consensus 176 ~s~Kl~~l~~lL~~~~~~--~~KvlIFSq~~~~Ld~l~~~l~~~g------------i~~~rldG~~~~~~R 233 (233)
.++|+..+.++|.+.... +.|+|||++++.+.+.|...|...| ..+..++|+|+..+|
T Consensus 369 ~~~k~~~l~~~l~~~~~~~~~~k~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~R 440 (555)
T 3tbk_A 369 ENPKLRDLYLVLQEEYHLKPETKTILFVKTRALVDALKKWIEENPALSFLKPGILTGRGRTNRATGMTLPAQ 440 (555)
T ss_dssp CCHHHHHHHHHHHHHHHHCTTCCEEEECSSHHHHHHHHHHHHHCGGGTTCCEEECCC---------------
T ss_pred CCHHHHHHHHHHHHHhccCCCceEEEEeCcHHHHHHHHHHHhhCcCcCceeeeEEEecCCcccccccCHHHH
Confidence 489999999999887643 4799999999999999999998864 455666668888776
No 19
>4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos}
Probab=97.04 E-value=0.00045 Score=64.64 Aligned_cols=58 Identities=24% Similarity=0.279 Sum_probs=37.5
Q ss_pred ccccHHHHHHHHhHHH--hCCCeEEEEechhhHHHHHHHHHHhc------------CCeEEEeeCCcccCCC
Q psy2047 176 ESGKLKKLDEILPDLK--KNGHRVLIFSQFIFVLDILGHYMDIR------------GWRHLRLDGATQVSSR 233 (233)
Q Consensus 176 ~s~Kl~~l~~lL~~~~--~~~~KvlIFSq~~~~Ld~l~~~l~~~------------gi~~~rldG~~~~~~R 233 (233)
.++|+..|.++|.+.. ..+.|+|||++++.+++.|...|... |..+..++|+|+..+|
T Consensus 611 ~~~K~~~L~~lL~~~~~~~~~~rvLIF~~t~~~ae~L~~~L~~~~~l~~ik~~~l~G~~~~~~hg~m~~~eR 682 (936)
T 4a2w_A 611 ENPKLEELVCILDDAYRYNPQTRTLLFAKTRALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQ 682 (936)
T ss_dssp CCHHHHHHHHHHHHTTTSCTTCCEEEEESSHHHHHHHHHHHHHCSTTSSCCCEEC-----------------
T ss_pred CCHHHHHHHHHHHHHhccCCCCeEEEEeCCHHHHHHHHHHHhhCccccccceeEEecCCCcccCCCCCHHHH
Confidence 4899999999998864 34689999999999999999999987 6666667788888776
No 20
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos}
Probab=97.00 E-value=0.00057 Score=62.81 Aligned_cols=58 Identities=24% Similarity=0.279 Sum_probs=36.8
Q ss_pred ccccHHHHHHHHhHHH--hCCCeEEEEechhhHHHHHHHHHHhc------------CCeEEEeeCCcccCCC
Q psy2047 176 ESGKLKKLDEILPDLK--KNGHRVLIFSQFIFVLDILGHYMDIR------------GWRHLRLDGATQVSSR 233 (233)
Q Consensus 176 ~s~Kl~~l~~lL~~~~--~~~~KvlIFSq~~~~Ld~l~~~l~~~------------gi~~~rldG~~~~~~R 233 (233)
.++|+..|.++|.+.. ..+.|+|||++++.+.+.|...|... |..+..++|+|+..+|
T Consensus 611 ~~~K~~~L~~lL~~~~~~~~~~kvLIF~~~~~~~~~L~~~L~~~~~~~~~~~~~l~G~~~~~~hg~~~~~eR 682 (797)
T 4a2q_A 611 ENPKLEELVCILDDAYRYNPQTRTLLFAKTRALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQ 682 (797)
T ss_dssp CCHHHHHHHHHHHHHHHHCSSCCEEEEESSHHHHHHHHHHHHTCSTTCSCCCEEC-----------------
T ss_pred CChHHHHHHHHHHHHhccCCCCeEEEEECcHHHHHHHHHHHHhCcccccccceEEEecCCcccCCCCCHHHH
Confidence 4889999999998754 44689999999999999999999873 6677788888988776
No 21
>3i32_A Heat resistant RNA dependent ATPase; RNA helicase, dimer, RNA recognition motif, ATP-BIND helicase, nucleotide-binding; 2.80A {Thermus thermophilus}
Probab=96.86 E-value=0.0011 Score=53.85 Aligned_cols=56 Identities=18% Similarity=0.228 Sum_probs=50.0
Q ss_pred ccccHHHHHHHHhHHHhCCCeEEEEechhhHHHHHHHHHHhcCCeEEEeeCCcccCCC
Q psy2047 176 ESGKLKKLDEILPDLKKNGHRVLIFSQFIFVLDILGHYMDIRGWRHLRLDGATQVSSR 233 (233)
Q Consensus 176 ~s~Kl~~l~~lL~~~~~~~~KvlIFSq~~~~Ld~l~~~l~~~gi~~~rldG~~~~~~R 233 (233)
.+.|+.+|.+++.... +.++|||+......+.+...|...|+....++|+++..+|
T Consensus 12 ~~~K~~~L~~ll~~~~--~~~~LVF~~t~~~~~~l~~~L~~~g~~~~~lhg~l~~~~r 67 (300)
T 3i32_A 12 VRGRLEVLSDLLYVAS--PDRAMVFTRTKAETEEIAQGLLRLGHPAQALHGDMSQGER 67 (300)
T ss_dssp SSSHHHHHHHHHHHHC--CSSEEEECSSHHHHHHHHHHHHTTTCCEEEECSCCCTHHH
T ss_pred HHHHHHHHHHHHHhcC--CCCEEEEECCHHHHHHHHHHHHhCCCCEEEEeCCCCHHHH
Confidence 3789999999997643 7799999999999999999999999999999999987654
No 22
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=96.06 E-value=0.0061 Score=50.56 Aligned_cols=56 Identities=18% Similarity=0.224 Sum_probs=48.4
Q ss_pred ccccHHHHHHHHhHHHhCCCeEEEEechhhHHHHHHHHHHhcCCeEEEeeCCcccCCC
Q psy2047 176 ESGKLKKLDEILPDLKKNGHRVLIFSQFIFVLDILGHYMDIRGWRHLRLDGATQVSSR 233 (233)
Q Consensus 176 ~s~Kl~~l~~lL~~~~~~~~KvlIFSq~~~~Ld~l~~~l~~~gi~~~rldG~~~~~~R 233 (233)
...|...+.+++... .+.|+|||+..+...+.+...|...|+.+..++|+++..+|
T Consensus 234 ~~~~~~~l~~~l~~~--~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r 289 (391)
T 1xti_A 234 DNEKNRKLFDLLDVL--EFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEER 289 (391)
T ss_dssp GGGHHHHHHHHHHHS--CCSEEEEECSCHHHHHHHHHHHHHTTCCEEEECTTSCHHHH
T ss_pred chhHHHHHHHHHHhc--CCCcEEEEeCcHHHHHHHHHHHHhCCCcEEEEeCCCCHHHH
Confidence 467888888888764 56799999999999999999999999999999999986543
No 23
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A*
Probab=96.06 E-value=0.0067 Score=54.63 Aligned_cols=58 Identities=19% Similarity=0.238 Sum_probs=42.8
Q ss_pred ccccHHHHHHHHhHHHh--CCCeEEEEechhhHHHHHHHHHHhcC----CeEEEeeC--------CcccCCC
Q psy2047 176 ESGKLKKLDEILPDLKK--NGHRVLIFSQFIFVLDILGHYMDIRG----WRHLRLDG--------ATQVSSR 233 (233)
Q Consensus 176 ~s~Kl~~l~~lL~~~~~--~~~KvlIFSq~~~~Ld~l~~~l~~~g----i~~~rldG--------~~~~~~R 233 (233)
.+.|+..|.++|.+... .+.++|||++++.+.+.|...|...| +++..++| +++.++|
T Consensus 378 ~~~k~~~L~~ll~~~~~~~~~~~~IIF~~~~~~~~~l~~~L~~~~~~~~~~~~~l~G~~~~~~h~~~~~~eR 449 (696)
T 2ykg_A 378 ENPKLEDLCFILQEEYHLNPETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQ 449 (696)
T ss_dssp CCHHHHHHHHHHHHHHTTCTTCCEEEECSCHHHHHHHHHHHHHCTTCCSCCEEC------------------
T ss_pred CCHHHHHHHHHHHHHhccCCCCcEEEEeCcHHHHHHHHHHHHhCCCccccceeEEEccCCCccccCCCHHHH
Confidence 57899999999987642 46799999999999999999999998 89999965 8877665
No 24
>4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens}
Probab=95.97 E-value=0.0015 Score=58.83 Aligned_cols=58 Identities=22% Similarity=0.271 Sum_probs=44.6
Q ss_pred ccccHHHHHHHHhHHHhC---CCeEEEEechhhHHHHHHHHHHhc------CCeEEEeeCC--------cccCCC
Q psy2047 176 ESGKLKKLDEILPDLKKN---GHRVLIFSQFIFVLDILGHYMDIR------GWRHLRLDGA--------TQVSSR 233 (233)
Q Consensus 176 ~s~Kl~~l~~lL~~~~~~---~~KvlIFSq~~~~Ld~l~~~l~~~------gi~~~rldG~--------~~~~~R 233 (233)
.+.|+..|.++|.+.... +.|+|||++++.+.+.|...|... |+++..++|+ |+..+|
T Consensus 379 ~~~k~~~L~~~L~~~~~~~~~~~~~IVF~~s~~~~~~l~~~L~~~~~l~~~g~~~~~lhg~~~~~~~~~~~~~eR 453 (699)
T 4gl2_A 379 ENEKLTKLRNTIMEQYTRTEESARGIIFTKTRQSAYALSQWITENEKFAEVGVKAHHLIGAGHSSEFKPMTQNEQ 453 (699)
T ss_dssp ---CSSCSHHHHHHHHHHSSSCCCEEEECSCHHHHHHHHHHHHSSCSCC-----CEECCCSCCCTTCCCCCHHHH
T ss_pred CCHHHHHHHHHHHHHHhcCCCCCcEEEEECcHHHHHHHHHHHHhCccccccCcceEEEECCCCccCCCCCCHHHH
Confidence 468888898988875432 679999999999999999999987 9999999999 876544
No 25
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=95.62 E-value=0.01 Score=49.67 Aligned_cols=57 Identities=21% Similarity=0.241 Sum_probs=48.9
Q ss_pred ccccHHHHHHHHhHHHhCCCeEEEEechhhHHHHHHHHHHhcCCeEEEeeCCcccCCC
Q psy2047 176 ESGKLKKLDEILPDLKKNGHRVLIFSQFIFVLDILGHYMDIRGWRHLRLDGATQVSSR 233 (233)
Q Consensus 176 ~s~Kl~~l~~lL~~~~~~~~KvlIFSq~~~~Ld~l~~~l~~~gi~~~rldG~~~~~~R 233 (233)
...|...+.++++.. ..+.|+|||+......+.+...|...|+.+..++|+++.++|
T Consensus 259 ~~~~~~~l~~~l~~~-~~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r 315 (417)
T 2i4i_A 259 ESDKRSFLLDLLNAT-GKDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDR 315 (417)
T ss_dssp GGGHHHHHHHHHHTC-CTTCEEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHH
T ss_pred cHhHHHHHHHHHHhc-CCCCeEEEEECCHHHHHHHHHHHHHCCCCeeEecCCCCHHHH
Confidence 467888888888764 346799999999999999999999999999999999987544
No 26
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=95.56 E-value=0.011 Score=48.35 Aligned_cols=55 Identities=18% Similarity=0.217 Sum_probs=46.7
Q ss_pred ccccHHHHHHHHhHHHhCCCeEEEEechhhHHHHHHHHHHhcCCeEEEeeCCcccCCC
Q psy2047 176 ESGKLKKLDEILPDLKKNGHRVLIFSQFIFVLDILGHYMDIRGWRHLRLDGATQVSSR 233 (233)
Q Consensus 176 ~s~Kl~~l~~lL~~~~~~~~KvlIFSq~~~~Ld~l~~~l~~~gi~~~rldG~~~~~~R 233 (233)
...|+..+.+++. ..+.|+|||+......+.+...|...|+.+..++|+++..+|
T Consensus 223 ~~~~~~~l~~~l~---~~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r 277 (367)
T 1hv8_A 223 ENERFEALCRLLK---NKEFYGLVFCKTKRDTKELASMLRDIGFKAGAIHGDLSQSQR 277 (367)
T ss_dssp GGGHHHHHHHHHC---STTCCEEEECSSHHHHHHHHHHHHHTTCCEEEECSSSCHHHH
T ss_pred hHHHHHHHHHHHh---cCCCcEEEEECCHHHHHHHHHHHHhcCCCeEEeeCCCCHHHH
Confidence 3567777777665 456799999999999999999999999999999999986543
No 27
>1tf5_A Preprotein translocase SECA subunit; ATPase, helicase, translocation, secretion, protein transport; 2.18A {Bacillus subtilis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1tf2_A 3iqy_A 1m6n_A 1m74_A* 3iqm_A 3jv2_A* 2ibm_A* 3dl8_A 1sx0_A 1sx1_A 1tm6_A
Probab=95.47 E-value=0.01 Score=54.34 Aligned_cols=56 Identities=18% Similarity=0.261 Sum_probs=50.0
Q ss_pred ccccHHHHHHHHhHHHhCCCeEEEEechhhHHHHHHHHHHhcCCeEEEeeCCcccC
Q psy2047 176 ESGKLKKLDEILPDLKKNGHRVLIFSQFIFVLDILGHYMDIRGWRHLRLDGATQVS 231 (233)
Q Consensus 176 ~s~Kl~~l~~lL~~~~~~~~KvlIFSq~~~~Ld~l~~~l~~~gi~~~rldG~~~~~ 231 (233)
...|..++.+.|.+....+.++|||+..+..-+.|...|...||++..|+|+++..
T Consensus 414 ~~~K~~al~~~i~~~~~~~~pvLVft~s~~~se~Ls~~L~~~gi~~~vLhg~~~~r 469 (844)
T 1tf5_A 414 MEGKFKAVAEDVAQRYMTGQPVLVGTVAVETSELISKLLKNKGIPHQVLNAKNHER 469 (844)
T ss_dssp HHHHHHHHHHHHHHHHHHTCCEEEEESCHHHHHHHHHHHHTTTCCCEEECSSCHHH
T ss_pred HHHHHHHHHHHHHHHHhcCCcEEEEECCHHHHHHHHHHHHHCCCCEEEeeCCccHH
Confidence 35799999999988766788999999999999999999999999999999997643
No 28
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=95.44 E-value=0.014 Score=48.68 Aligned_cols=57 Identities=18% Similarity=0.255 Sum_probs=48.2
Q ss_pred hccccHHHHHHHHhHHHhCCCeEEEEechhhHHHHHHHHHHhcCCeEEEeeCCcccCCC
Q psy2047 175 VESGKLKKLDEILPDLKKNGHRVLIFSQFIFVLDILGHYMDIRGWRHLRLDGATQVSSR 233 (233)
Q Consensus 175 ~~s~Kl~~l~~lL~~~~~~~~KvlIFSq~~~~Ld~l~~~l~~~gi~~~rldG~~~~~~R 233 (233)
..+.|+..+..++... .+.|+|||++.+...+.+...|...|+.+..++|+++..+|
T Consensus 241 ~~~~k~~~l~~~~~~~--~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r 297 (400)
T 1s2m_A 241 EERQKLHCLNTLFSKL--QINQAIIFCNSTNRVELLAKKITDLGYSCYYSHARMKQQER 297 (400)
T ss_dssp CGGGHHHHHHHHHHHS--CCSEEEEECSSHHHHHHHHHHHHHHTCCEEEECTTSCHHHH
T ss_pred chhhHHHHHHHHHhhc--CCCcEEEEEecHHHHHHHHHHHHhcCCCeEEecCCCCHHHH
Confidence 3467888888777653 45699999999999999999999999999999999986543
No 29
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=95.29 E-value=0.015 Score=49.45 Aligned_cols=55 Identities=22% Similarity=0.309 Sum_probs=46.9
Q ss_pred ccccHHHHHHHHhHHHhCCCeEEEEechhhHHHHHHHHHHhcCCeEEEeeCCcccCCC
Q psy2047 176 ESGKLKKLDEILPDLKKNGHRVLIFSQFIFVLDILGHYMDIRGWRHLRLDGATQVSSR 233 (233)
Q Consensus 176 ~s~Kl~~l~~lL~~~~~~~~KvlIFSq~~~~Ld~l~~~l~~~gi~~~rldG~~~~~~R 233 (233)
...|...+.++|... +.++|||++.....+.+...|...|+++..++|+++..+|
T Consensus 285 ~~~k~~~l~~~l~~~---~~~~lVF~~t~~~a~~l~~~L~~~~~~~~~lhg~~~~~~R 339 (434)
T 2db3_A 285 KYAKRSKLIEILSEQ---ADGTIVFVETKRGADFLASFLSEKEFPTTSIHGDRLQSQR 339 (434)
T ss_dssp GGGHHHHHHHHHHHC---CTTEEEECSSHHHHHHHHHHHHHTTCCEEEESTTSCHHHH
T ss_pred cHHHHHHHHHHHHhC---CCCEEEEEeCcHHHHHHHHHHHhCCCCEEEEeCCCCHHHH
Confidence 456788887777653 4569999999999999999999999999999999987654
No 30
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=95.24 E-value=0.017 Score=48.28 Aligned_cols=54 Identities=19% Similarity=0.196 Sum_probs=46.6
Q ss_pred ccHHHHHHHHhHHHhCCCeEEEEechhhHHHHHHHHHHhcCCeEEEeeCCcccCCC
Q psy2047 178 GKLKKLDEILPDLKKNGHRVLIFSQFIFVLDILGHYMDIRGWRHLRLDGATQVSSR 233 (233)
Q Consensus 178 ~Kl~~l~~lL~~~~~~~~KvlIFSq~~~~Ld~l~~~l~~~gi~~~rldG~~~~~~R 233 (233)
.|+..+.+++... .+.|+|||++.....+.+...|...|+.+..++|+++..+|
T Consensus 262 ~k~~~l~~~~~~~--~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r 315 (410)
T 2j0s_A 262 WKFDTLCDLYDTL--TITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKER 315 (410)
T ss_dssp HHHHHHHHHHHHH--TSSEEEEECSSHHHHHHHHHHHHHTTCCCEEECTTSCHHHH
T ss_pred hHHHHHHHHHHhc--CCCcEEEEEcCHHHHHHHHHHHHhCCCceEEeeCCCCHHHH
Confidence 4888888887764 34599999999999999999999999999999999987554
No 31
>2fsf_A Preprotein translocase SECA subunit; ATPase, DNA-RNA helicase, protein translocation, protein transport; 2.00A {Escherichia coli} PDB: 2fsg_A* 2fsh_A* 2fsi_A* 2vda_A 3bxz_A*
Probab=95.04 E-value=0.017 Score=52.86 Aligned_cols=55 Identities=18% Similarity=0.235 Sum_probs=49.7
Q ss_pred ccccHHHHHHHHhHHHhCCCeEEEEechhhHHHHHHHHHHhcCCeEEEeeCCccc
Q psy2047 176 ESGKLKKLDEILPDLKKNGHRVLIFSQFIFVLDILGHYMDIRGWRHLRLDGATQV 230 (233)
Q Consensus 176 ~s~Kl~~l~~lL~~~~~~~~KvlIFSq~~~~Ld~l~~~l~~~gi~~~rldG~~~~ 230 (233)
...|..++.+.+.+....+..+|||+..+..-+.|...|.+.||++..|+|+...
T Consensus 423 ~~~K~~al~~~i~~~~~~gqpvLVft~sie~se~Ls~~L~~~gi~~~vLnak~~~ 477 (853)
T 2fsf_A 423 EAEKIQAIIEDIKERTAKGQPVLVGTISIEKSELVSNELTKAGIKHNVLNAKFHA 477 (853)
T ss_dssp HHHHHHHHHHHHHHHHTTTCCEEEEESSHHHHHHHHHHHHHTTCCCEECCTTCHH
T ss_pred HHHHHHHHHHHHHHHhcCCCCEEEEECcHHHHHHHHHHHHHCCCCEEEecCChhH
Confidence 3679999999998877778899999999999999999999999999999998654
No 32
>1nkt_A Preprotein translocase SECA 1 subunit; preprotein translocation, ATPase, transmembrane transport, helicase-like motor domain; HET: ADP; 2.60A {Mycobacterium tuberculosis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1nl3_A
Probab=94.92 E-value=0.022 Score=52.35 Aligned_cols=54 Identities=17% Similarity=0.110 Sum_probs=49.2
Q ss_pred cccHHHHHHHHhHHHhCCCeEEEEechhhHHHHHHHHHHhcCCeEEEeeCCccc
Q psy2047 177 SGKLKKLDEILPDLKKNGHRVLIFSQFIFVLDILGHYMDIRGWRHLRLDGATQV 230 (233)
Q Consensus 177 s~Kl~~l~~lL~~~~~~~~KvlIFSq~~~~Ld~l~~~l~~~gi~~~rldG~~~~ 230 (233)
..|..++.+.+.+....|..+|||+..+..-+.|...|.+.||++..|+|+...
T Consensus 443 ~~K~~al~~~i~~~~~~gqpvLVft~Sie~sE~Ls~~L~~~Gi~~~vLnak~~~ 496 (922)
T 1nkt_A 443 EAKYIAVVDDVAERYAKGQPVLIGTTSVERSEYLSRQFTKRRIPHNVLNAKYHE 496 (922)
T ss_dssp HHHHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHHHHHTTCCCEEECSSCHH
T ss_pred HHHHHHHHHHHHHHHhcCCcEEEEECCHHHHHHHHHHHHHCCCCEEEecCChhH
Confidence 569999999998877778899999999999999999999999999999998653
No 33
>3jux_A Protein translocase subunit SECA; protein translocation, ATPase, conformational change, peptide binding, ATP-binding, cell inner membrane; HET: ADP; 3.10A {Thermotoga maritima} PDB: 3din_A*
Probab=94.79 E-value=0.019 Score=51.93 Aligned_cols=54 Identities=22% Similarity=0.276 Sum_probs=49.0
Q ss_pred ccccHHHHHHHHhHHHhCCCeEEEEechhhHHHHHHHHHHhcCCeEEEeeCCcc
Q psy2047 176 ESGKLKKLDEILPDLKKNGHRVLIFSQFIFVLDILGHYMDIRGWRHLRLDGATQ 229 (233)
Q Consensus 176 ~s~Kl~~l~~lL~~~~~~~~KvlIFSq~~~~Ld~l~~~l~~~gi~~~rldG~~~ 229 (233)
...|..++.+.|.+....+.++|||+..+..-+.|...|.+.||++..|+|+..
T Consensus 456 ~~eK~~al~~~I~~~~~~gqpVLVFt~S~e~sE~Ls~~L~~~Gi~~~vLhgkq~ 509 (822)
T 3jux_A 456 QKEKYEKIVEEIEKRYKKGQPVLVGTTSIEKSELLSSMLKKKGIPHQVLNAKYH 509 (822)
T ss_dssp HHHHHHHHHHHHHHHHHHTCCEEEEESSHHHHHHHHHHHHTTTCCCEEECSCHH
T ss_pred HHHHHHHHHHHHHHHhhCCCCEEEEECCHHHHHHHHHHHHHCCCCEEEeeCCch
Confidence 357999999999887777889999999999999999999999999999999854
No 34
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=94.71 E-value=0.023 Score=46.89 Aligned_cols=55 Identities=20% Similarity=0.187 Sum_probs=45.3
Q ss_pred cccHHHHHHHHhHHHhCCCeEEEEechhhHHHHHHHHHHhcCCeEEEeeCCcccCCC
Q psy2047 177 SGKLKKLDEILPDLKKNGHRVLIFSQFIFVLDILGHYMDIRGWRHLRLDGATQVSSR 233 (233)
Q Consensus 177 s~Kl~~l~~lL~~~~~~~~KvlIFSq~~~~Ld~l~~~l~~~gi~~~rldG~~~~~~R 233 (233)
..|...+..++... .+.|+|||+......+.+...|...|+.+..++|+++..+|
T Consensus 228 ~~~~~~l~~~~~~~--~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r 282 (395)
T 3pey_A 228 ADKFDVLTELYGLM--TIGSSIIFVATKKTANVLYGKLKSEGHEVSILHGDLQTQER 282 (395)
T ss_dssp HHHHHHHHHHHTTT--TSSEEEEECSCHHHHHHHHHHHHHTTCCCEEECTTSCHHHH
T ss_pred HHHHHHHHHHHHhc--cCCCEEEEeCCHHHHHHHHHHHHhcCCcEEEeCCCCCHHHH
Confidence 45666666666543 35799999999999999999999999999999999987544
No 35
>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A*
Probab=94.65 E-value=0.038 Score=49.70 Aligned_cols=57 Identities=18% Similarity=0.191 Sum_probs=49.2
Q ss_pred cccHHHHHHHHhHHHhCCCeEEEEechhhHHHHHHHHHHhcCCeEEEeeCCcccCCC
Q psy2047 177 SGKLKKLDEILPDLKKNGHRVLIFSQFIFVLDILGHYMDIRGWRHLRLDGATQVSSR 233 (233)
Q Consensus 177 s~Kl~~l~~lL~~~~~~~~KvlIFSq~~~~Ld~l~~~l~~~gi~~~rldG~~~~~~R 233 (233)
.+++..+...|......+.++|||+....+.+.|...|...|++...++|+++..+|
T Consensus 422 ~~~~~~Ll~~l~~~~~~~~~vlVf~~t~~~ae~L~~~L~~~gi~~~~lh~~~~~~~R 478 (664)
T 1c4o_A 422 ENQILDLMEGIRERAARGERTLVTVLTVRMAEELTSFLVEHGIRARYLHHELDAFKR 478 (664)
T ss_dssp TTHHHHHHHHHHHHHHTTCEEEEECSSHHHHHHHHHHHHHTTCCEEEECTTCCHHHH
T ss_pred cchHHHHHHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHhcCCCceeecCCCCHHHH
Confidence 457777777787777788999999999999999999999999999999999876543
No 36
>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B*
Probab=94.44 E-value=0.043 Score=49.31 Aligned_cols=57 Identities=18% Similarity=0.185 Sum_probs=48.6
Q ss_pred cccHHHHHHHHhHHHhCCCeEEEEechhhHHHHHHHHHHhcCCeEEEeeCCcccCCC
Q psy2047 177 SGKLKKLDEILPDLKKNGHRVLIFSQFIFVLDILGHYMDIRGWRHLRLDGATQVSSR 233 (233)
Q Consensus 177 s~Kl~~l~~lL~~~~~~~~KvlIFSq~~~~Ld~l~~~l~~~gi~~~rldG~~~~~~R 233 (233)
.+++..++..|......+.++|||+......+.|...|...|++...++|+++..+|
T Consensus 428 ~~~~~~Ll~~l~~~~~~~~~vlVf~~t~~~ae~L~~~L~~~gi~~~~lh~~~~~~~R 484 (661)
T 2d7d_A 428 EGQIDDLIGEIQARIERNERVLVTTLTKKMSEDLTDYLKEIGIKVNYLHSEIKTLER 484 (661)
T ss_dssp TTHHHHHHHHHHHHHTTTCEEEEECSSHHHHHHHHHHHHHTTCCEEEECTTCCHHHH
T ss_pred cchHHHHHHHHHHHHhcCCeEEEEECCHHHHHHHHHHHHhcCCCeEEEeCCCCHHHH
Confidence 456777777777776778899999999999999999999999999999999876543
No 37
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=94.29 E-value=0.042 Score=45.70 Aligned_cols=55 Identities=18% Similarity=0.216 Sum_probs=46.1
Q ss_pred cccHHHHHHHHhHHHhCCCeEEEEechhhHHHHHHHHHHhcCCeEEEeeCCcccCCC
Q psy2047 177 SGKLKKLDEILPDLKKNGHRVLIFSQFIFVLDILGHYMDIRGWRHLRLDGATQVSSR 233 (233)
Q Consensus 177 s~Kl~~l~~lL~~~~~~~~KvlIFSq~~~~Ld~l~~~l~~~gi~~~rldG~~~~~~R 233 (233)
..|+..+.+++... .+.|+|||+......+.+...|...|+.+..++|+++..+|
T Consensus 251 ~~~~~~l~~~~~~~--~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r 305 (412)
T 3fht_A 251 DEKFQALCNLYGAI--TIAQAMIFCHTRKTASWLAAELSKEGHQVALLSGEMMVEQR 305 (412)
T ss_dssp HHHHHHHHHHHHHH--SSSEEEEECSSHHHHHHHHHHHHHTTCCCEEECTTSCHHHH
T ss_pred HHHHHHHHHHHhhc--CCCCEEEEeCCHHHHHHHHHHHHhCCCeEEEecCCCCHHHH
Confidence 45677777766653 45799999999999999999999999999999999987554
No 38
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=94.17 E-value=0.019 Score=47.90 Aligned_cols=55 Identities=22% Similarity=0.244 Sum_probs=43.6
Q ss_pred cccHHHHHHHHhHHHhCCCeEEEEechhhHHHHHHHHHHhcCCeEEEeeCCcccCCC
Q psy2047 177 SGKLKKLDEILPDLKKNGHRVLIFSQFIFVLDILGHYMDIRGWRHLRLDGATQVSSR 233 (233)
Q Consensus 177 s~Kl~~l~~lL~~~~~~~~KvlIFSq~~~~Ld~l~~~l~~~gi~~~rldG~~~~~~R 233 (233)
..|+..+.+++... .+.|+|||+......+.+...|...|+.+..++|+++..+|
T Consensus 265 ~~~~~~l~~~~~~~--~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~h~~~~~~~r 319 (414)
T 3eiq_A 265 EWKLDTLCDLYETL--TITQAVIFINTRRKVDWLTEKMHARDFTVSAMHGDMDQKER 319 (414)
T ss_dssp TTHHHHHHHHHHSS--CCSSCEEECSCHHHHHHHHHHHHTTTCCCEEC---CHHHHH
T ss_pred HhHHHHHHHHHHhC--CCCcEEEEeCCHHHHHHHHHHHHhcCCeEEEecCCCCHHHH
Confidence 34788877777654 35699999999999999999999999999999999986543
No 39
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Probab=94.06 E-value=0.053 Score=47.30 Aligned_cols=55 Identities=11% Similarity=0.126 Sum_probs=46.4
Q ss_pred cccHHHHHHHHhHHHhCCCeEEEEechhhHHHHHHHHHHhcCCeEEEeeCCcccCCC
Q psy2047 177 SGKLKKLDEILPDLKKNGHRVLIFSQFIFVLDILGHYMDIRGWRHLRLDGATQVSSR 233 (233)
Q Consensus 177 s~Kl~~l~~lL~~~~~~~~KvlIFSq~~~~Ld~l~~~l~~~gi~~~rldG~~~~~~R 233 (233)
..|+..+.++|... .+.++|||+..+...+.+...|...|+....++|+++.++|
T Consensus 221 ~~~~~~l~~~l~~~--~~~~~IVf~~sr~~~e~l~~~L~~~g~~~~~~h~~l~~~~R 275 (523)
T 1oyw_A 221 FKPLDQLMRYVQEQ--RGKSGIIYCNSRAKVEDTAARLQSKGISAAAYHAGLENNVR 275 (523)
T ss_dssp SSHHHHHHHHHHHT--TTCCEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHH
T ss_pred CCHHHHHHHHHHhc--CCCcEEEEeCCHHHHHHHHHHHHHCCCCEEEecCCCCHHHH
Confidence 55677777766543 46799999999999999999999999999999999987654
No 40
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=92.93 E-value=0.018 Score=47.63 Aligned_cols=54 Identities=11% Similarity=0.090 Sum_probs=0.0
Q ss_pred ccHHHHHHHHhHHHhCCCeEEEEechhhHHHHHHHHHHhcCCeEEEeeCCcccCCC
Q psy2047 178 GKLKKLDEILPDLKKNGHRVLIFSQFIFVLDILGHYMDIRGWRHLRLDGATQVSSR 233 (233)
Q Consensus 178 ~Kl~~l~~lL~~~~~~~~KvlIFSq~~~~Ld~l~~~l~~~gi~~~rldG~~~~~~R 233 (233)
.|...+.+++... .+.|+|||+..+...+.+...|...|+.+..++|+++..+|
T Consensus 245 ~~~~~l~~~~~~~--~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r 298 (394)
T 1fuu_A 245 YKYECLTDLYDSI--SVTQAVIFCNTRRKVEELTTKLRNDKFTVSAIYSDLPQQER 298 (394)
T ss_dssp --------------------------------------------------------
T ss_pred hHHHHHHHHHhcC--CCCcEEEEECCHHHHHHHHHHHHHcCCeEEEeeCCCCHHHH
Confidence 3666676666553 35699999999999999999999999999999999988765
No 41
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=92.65 E-value=0.1 Score=46.26 Aligned_cols=41 Identities=7% Similarity=0.003 Sum_probs=37.7
Q ss_pred CCCeEEEEechhhHHHHHHHHHHhcCCeEEEeeCCcccCCC
Q psy2047 193 NGHRVLIFSQFIFVLDILGHYMDIRGWRHLRLDGATQVSSR 233 (233)
Q Consensus 193 ~~~KvlIFSq~~~~Ld~l~~~l~~~gi~~~rldG~~~~~~R 233 (233)
.+.++|||+..+...+.+...|...|+....++|+++..+|
T Consensus 266 ~~~~~IVf~~sr~~~e~la~~L~~~g~~~~~~h~~l~~~~R 306 (591)
T 2v1x_A 266 KGQSGIIYCFSQKDSEQVTVSLQNLGIHAGAYHANLEPEDK 306 (591)
T ss_dssp TTCEEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHH
T ss_pred cCCCeEEEeCcHHHHHHHHHHHHHCCCCEEEecCCCCHHHH
Confidence 46799999999999999999999999999999999987654
No 42
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4}
Probab=92.59 E-value=0.12 Score=44.50 Aligned_cols=56 Identities=11% Similarity=0.122 Sum_probs=44.5
Q ss_pred cccHHHHHHHHhHHHhC-CCeEEEEechhhHHHHHHHHHHhcCCeEEEeeCCcccCCC
Q psy2047 177 SGKLKKLDEILPDLKKN-GHRVLIFSQFIFVLDILGHYMDIRGWRHLRLDGATQVSSR 233 (233)
Q Consensus 177 s~Kl~~l~~lL~~~~~~-~~KvlIFSq~~~~Ld~l~~~l~~~gi~~~rldG~~~~~~R 233 (233)
..|...+.+++...... +.++|||+. +...+.|...|...|.++..++|+|+..+|
T Consensus 330 ~~~~~~l~~~l~~~~~~~~~~~ivf~~-~~~~~~l~~~L~~~~~~v~~~~g~~~~~~r 386 (510)
T 2oca_A 330 SKRNKWIAKLAIKLAQKDENAFVMFKH-VSHGKAIFDLIKNEYDKVYYVSGEVDTETR 386 (510)
T ss_dssp HHHHHHHHHHHHHHHTTTCEEEEEESS-HHHHHHHHHHHHTTCSSEEEESSSTTHHHH
T ss_pred HHHHHHHHHHHHHHHhcCCCeEEEEec-HHHHHHHHHHHHHcCCCeEEEECCCCHHHH
Confidence 45666777777766554 457888888 888888999999999999999999986543
No 43
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=91.73 E-value=0.18 Score=44.33 Aligned_cols=41 Identities=15% Similarity=0.241 Sum_probs=36.8
Q ss_pred CCCeEEEEechhhHHHHHHHHHHhc---CCeEEEeeCCcccCCC
Q psy2047 193 NGHRVLIFSQFIFVLDILGHYMDIR---GWRHLRLDGATQVSSR 233 (233)
Q Consensus 193 ~~~KvlIFSq~~~~Ld~l~~~l~~~---gi~~~rldG~~~~~~R 233 (233)
.+.++|||+......+.+...|... |+.+..++|+++..+|
T Consensus 287 ~~~~~iVF~~t~~~~~~l~~~L~~~~~~~~~v~~~hg~~~~~~R 330 (579)
T 3sqw_A 287 SNYKAIIFAPTVKFTSFLCSILKNEFKKDLPILEFHGKITQNKR 330 (579)
T ss_dssp TCCEEEEECSSHHHHHHHHHHHHHHHTTTSCEEEESTTSCHHHH
T ss_pred CCCcEEEECCcHHHHHHHHHHHHHhhcCCCcEEEecCCCCHHHH
Confidence 3679999999999999999999887 9999999999987654
No 44
>3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase, translation termination, binding, hydrolase, membrane, mRNA transport; 2.80A {Schizosaccharomyces pombe}
Probab=91.22 E-value=0.1 Score=45.23 Aligned_cols=55 Identities=20% Similarity=0.155 Sum_probs=40.5
Q ss_pred cccHHHHHHHHhHHHhCCCeEEEEechhhHHHHHHHHHHhcCCeEEEeeCCcccCCC
Q psy2047 177 SGKLKKLDEILPDLKKNGHRVLIFSQFIFVLDILGHYMDIRGWRHLRLDGATQVSSR 233 (233)
Q Consensus 177 s~Kl~~l~~lL~~~~~~~~KvlIFSq~~~~Ld~l~~~l~~~gi~~~rldG~~~~~~R 233 (233)
..|...+.+++... .+.|+|||+..+...+.+...|...|+.+..++|+++..+|
T Consensus 342 ~~k~~~l~~ll~~~--~~~~~LVF~~s~~~a~~l~~~L~~~~~~v~~~hg~~~~~~R 396 (508)
T 3fho_A 342 EHKYNVLVELYGLL--TIGQSIIFCKKKDTAEEIARRMTADGHTVACLTGNLEGAQR 396 (508)
T ss_dssp HHHHHHHHHHHC-----CCCEEEBCSSTTTTTHHHHHHTTTTCCCCEEC-----CTT
T ss_pred HHHHHHHHHHHHhc--CCCcEEEEECCHHHHHHHHHHHHhCCCcEEEEeCCCCHHHH
Confidence 45666676666553 45799999999999999999999999999999999988765
No 45
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=90.65 E-value=0.27 Score=42.93 Aligned_cols=41 Identities=15% Similarity=0.241 Sum_probs=36.8
Q ss_pred CCCeEEEEechhhHHHHHHHHHHhc---CCeEEEeeCCcccCCC
Q psy2047 193 NGHRVLIFSQFIFVLDILGHYMDIR---GWRHLRLDGATQVSSR 233 (233)
Q Consensus 193 ~~~KvlIFSq~~~~Ld~l~~~l~~~---gi~~~rldG~~~~~~R 233 (233)
.+.++|||+......+.+...|... |+.+..++|+++..+|
T Consensus 338 ~~~~~iVF~~s~~~~~~l~~~L~~~~~~~~~v~~~h~~~~~~~R 381 (563)
T 3i5x_A 338 SNYKAIIFAPTVKFTSFLCSILKNEFKKDLPILEFHGKITQNKR 381 (563)
T ss_dssp TCCEEEEECSCHHHHHHHHHHHHHHHTTTSCEEEESTTSCHHHH
T ss_pred CCCcEEEEcCcHHHHHHHHHHHHHhccCCceEEEecCCCCHHHH
Confidence 4679999999999999999999887 9999999999987654
No 46
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens}
Probab=87.92 E-value=0.099 Score=44.75 Aligned_cols=55 Identities=18% Similarity=0.216 Sum_probs=0.0
Q ss_pred cccHHHHHHHHhHHHhCCCeEEEEechhhHHHHHHHHHHhcCCeEEEeeCCcccCCC
Q psy2047 177 SGKLKKLDEILPDLKKNGHRVLIFSQFIFVLDILGHYMDIRGWRHLRLDGATQVSSR 233 (233)
Q Consensus 177 s~Kl~~l~~lL~~~~~~~~KvlIFSq~~~~Ld~l~~~l~~~gi~~~rldG~~~~~~R 233 (233)
..|...+..++... .+.++|||++.....+.+...|...|+.+..++|+++..+|
T Consensus 318 ~~~~~~l~~~~~~~--~~~~~lvF~~s~~~~~~l~~~L~~~~~~v~~lh~~~~~~~R 372 (479)
T 3fmp_B 318 DEKFQALCNLYGAI--TIAQAMIFCHTRKTASWLAAELSKEGHQVALLSGEMMVEQR 372 (479)
T ss_dssp ---------------------------------------------------------
T ss_pred HHHHHHHHHHHhhc--cCCceEEEeCcHHHHHHHHHHHHhCCccEEEecCCCCHHHH
Confidence 35566665655543 34699999999999999999999999999999999988766
No 47
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=86.21 E-value=0.76 Score=38.25 Aligned_cols=48 Identities=23% Similarity=0.068 Sum_probs=42.0
Q ss_pred cccHHHHHHHHhHHHhCCCeEEEEechhhHHHHHHHHHHhcCCeEE-EeeCC
Q psy2047 177 SGKLKKLDEILPDLKKNGHRVLIFSQFIFVLDILGHYMDIRGWRHL-RLDGA 227 (233)
Q Consensus 177 s~Kl~~l~~lL~~~~~~~~KvlIFSq~~~~Ld~l~~~l~~~gi~~~-rldG~ 227 (233)
..|...+.++|.. .+.++|||+......+.+...|...|+... .++|.
T Consensus 238 ~~~~~~l~~~l~~---~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~h~~ 286 (414)
T 3oiy_A 238 SRSKEKLVELLEI---FRDGILIFAQTEEEGKELYEYLKRFKFNVGETWSEF 286 (414)
T ss_dssp SCCHHHHHHHHHH---HCSSEEEEESSHHHHHHHHHHHHHTTCCEEESSSCH
T ss_pred cCHHHHHHHHHHH---cCCCEEEEECCHHHHHHHHHHHHHcCCceehhhcCc
Confidence 4688888888877 368999999999999999999999999987 88874
No 48
>3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA compl protease/ntpase/helicase, hydrolase; 1.95A {Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4b71_A* 4b73_A* 4b74_A* 4b76_A* 4b75_A* 4a92_A* 1cu1_A 4b6e_A* 4b6f_A* 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A* 3kqh_A 3kqk_A ...
Probab=85.78 E-value=0.91 Score=40.71 Aligned_cols=41 Identities=24% Similarity=0.143 Sum_probs=37.6
Q ss_pred CCCeEEEEechhhHHHHHHHHHHhcCCeEEEeeCCcccCCC
Q psy2047 193 NGHRVLIFSQFIFVLDILGHYMDIRGWRHLRLDGATQVSSR 233 (233)
Q Consensus 193 ~~~KvlIFSq~~~~Ld~l~~~l~~~gi~~~rldG~~~~~~R 233 (233)
.+.++|||+......+.+...|...|++...++|+++..+|
T Consensus 395 ~~~~vLVFv~Tr~~ae~la~~L~~~g~~v~~lHG~l~q~er 435 (666)
T 3o8b_A 395 RGGRHLIFCHSKKKCDELAAKLSGLGINAVAYYRGLDVSVI 435 (666)
T ss_dssp SSSEEEEECSCHHHHHHHHHHHHTTTCCEEEECTTSCGGGS
T ss_pred cCCcEEEEeCCHHHHHHHHHHHHhCCCcEEEecCCCCHHHH
Confidence 46799999999999999999999999999999999987653
No 49
>3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus}
Probab=84.89 E-value=0.8 Score=40.24 Aligned_cols=52 Identities=12% Similarity=0.064 Sum_probs=38.3
Q ss_pred cHHHHHHHHhHHHh---CCCeEEEEechhhHHHHHHHHHHhcCCe--------EEEeeCCccc
Q psy2047 179 KLKKLDEILPDLKK---NGHRVLIFSQFIFVLDILGHYMDIRGWR--------HLRLDGATQV 230 (233)
Q Consensus 179 Kl~~l~~lL~~~~~---~~~KvlIFSq~~~~Ld~l~~~l~~~gi~--------~~rldG~~~~ 230 (233)
+...+.+.|.+... .+.|+|||++++...+.|...|...+.. +.+++|+++.
T Consensus 421 r~~~i~~~l~~~l~~~~~~~k~lVF~~~~~~a~~l~~~L~~~~~~~~~~~~~~~~~i~g~~~~ 483 (590)
T 3h1t_A 421 RTDAFAKHLTDFMKRTDRFAKTIVFCVDQEHADEMRRALNNLNSDLSRKHPDYVARVTSEEGK 483 (590)
T ss_dssp THHHHHHHHHHHHHHHCTTSEEEEEESSHHHHHHHHHHHHHHTHHHHTTCTTSEEECSSTTHH
T ss_pred HHHHHHHHHHHHHHhcCCCccEEEEECCHHHHHHHHHHHHHhhhhhhccCCCeEEEEeCCChH
Confidence 44455554444322 3579999999999999999999887654 6789998863
No 50
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=80.84 E-value=1.1 Score=42.99 Aligned_cols=55 Identities=11% Similarity=0.029 Sum_probs=42.9
Q ss_pred ccHHHHHHHHhHHHhCCCeEEEEechhhHHHHHHHHHHhc--CCeEEEeeCCcccCCC
Q psy2047 178 GKLKKLDEILPDLKKNGHRVLIFSQFIFVLDILGHYMDIR--GWRHLRLDGATQVSSR 233 (233)
Q Consensus 178 ~Kl~~l~~lL~~~~~~~~KvlIFSq~~~~Ld~l~~~l~~~--gi~~~rldG~~~~~~R 233 (233)
.+......++.++ ..|.+++||+..+...+.+...|... |+.+..++|+|+..+|
T Consensus 797 ~~~~i~~~il~~l-~~g~qvlvf~~~v~~~~~l~~~L~~~~p~~~v~~lhg~~~~~eR 853 (1151)
T 2eyq_A 797 DSMVVREAILREI-LRGGQVYYLYNDVENIQKAAERLAELVPEARIAIGHGQMREREL 853 (1151)
T ss_dssp CHHHHHHHHHHHH-TTTCEEEEECCCSSCHHHHHHHHHHHCTTSCEEECCSSCCHHHH
T ss_pred CHHHHHHHHHHHH-hcCCeEEEEECCHHHHHHHHHHHHHhCCCCeEEEEeCCCCHHHH
Confidence 3333444444443 46789999999999999999999887 8999999999987543
No 51
>3g5j_A Putative ATP/GTP binding protein; N-terminal domain of ATP/GTP binding protein, PSI, MCSG, STR genomics, protein structure initiative; HET: PGE; 1.76A {Clostridium difficile}
Probab=77.86 E-value=3.7 Score=27.89 Aligned_cols=51 Identities=16% Similarity=0.152 Sum_probs=35.0
Q ss_pred ccHHHHHHHHhHHHhCC-CeEEEEec-hhhHHHHHHHHHHhcCCeEEEeeCCcc
Q psy2047 178 GKLKKLDEILPDLKKNG-HRVLIFSQ-FIFVLDILGHYMDIRGWRHLRLDGATQ 229 (233)
Q Consensus 178 ~Kl~~l~~lL~~~~~~~-~KvlIFSq-~~~~Ld~l~~~l~~~gi~~~rldG~~~ 229 (233)
.++..+.+.+..+ ..+ .++||+|. .-..-......|...|++...++|++.
T Consensus 73 ~~~~~~~~~~~~~-~~~~~~ivvyC~~~G~rs~~a~~~L~~~G~~v~~l~GG~~ 125 (134)
T 3g5j_A 73 YKLKDIYLQAAEL-ALNYDNIVIYCARGGMRSGSIVNLLSSLGVNVYQLEGGYK 125 (134)
T ss_dssp GGHHHHHHHHHHH-HTTCSEEEEECSSSSHHHHHHHHHHHHTTCCCEEETTHHH
T ss_pred ccHHHHHHHHHHh-ccCCCeEEEEECCCChHHHHHHHHHHHcCCceEEEeCcHH
Confidence 4445555555554 344 78999994 433445667788899999899999864
No 52
>2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A
Probab=75.72 E-value=3.2 Score=35.14 Aligned_cols=39 Identities=15% Similarity=0.127 Sum_probs=35.1
Q ss_pred HhCCCeEEEEechhhHHHHHHHHHHhcCCeEEEeeCCcc
Q psy2047 191 KKNGHRVLIFSQFIFVLDILGHYMDIRGWRHLRLDGATQ 229 (233)
Q Consensus 191 ~~~~~KvlIFSq~~~~Ld~l~~~l~~~gi~~~rldG~~~ 229 (233)
...+.++|||+......+.+...|...|+.+..++|++.
T Consensus 185 ~~~~~~~lVF~~s~~~a~~l~~~L~~~g~~~~~lh~~~~ 223 (451)
T 2jlq_A 185 TDYQGKTVWFVPSIKAGNDIANCLRKSGKRVIQLSRKTF 223 (451)
T ss_dssp HHCCSCEEEECSSHHHHHHHHHHHHTTTCCEEEECTTTH
T ss_pred HhCCCCEEEEcCCHHHHHHHHHHHHHcCCeEEECCHHHH
Confidence 344679999999999999999999999999999999865
No 53
>1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A*
Probab=75.00 E-value=3.1 Score=35.17 Aligned_cols=40 Identities=10% Similarity=0.044 Sum_probs=35.0
Q ss_pred hHHHhCCCeEEEEechhhHHHHHHHHHHhcCCeEEEeeCC
Q psy2047 188 PDLKKNGHRVLIFSQFIFVLDILGHYMDIRGWRHLRLDGA 227 (233)
Q Consensus 188 ~~~~~~~~KvlIFSq~~~~Ld~l~~~l~~~gi~~~rldG~ 227 (233)
..+.+.+.++|||+......+.+...|...|++...++|.
T Consensus 171 ~~l~~~~~~~lVF~~s~~~a~~l~~~L~~~~~~v~~lhg~ 210 (440)
T 1yks_A 171 DWILADKRPTAWFLPSIRAANVMAASLRKAGKSVVVLNRK 210 (440)
T ss_dssp HHHHHCCSCEEEECSCHHHHHHHHHHHHHTTCCEEECCSS
T ss_pred HHHHhcCCCEEEEeCCHHHHHHHHHHHHHcCCCEEEecch
Confidence 3334457899999999999999999999999999999994
No 54
>3gk5_A Uncharacterized rhodanese-related protein TVG0868615; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.40A {Thermoplasma volcanium GSS1}
Probab=72.11 E-value=4.5 Score=26.68 Aligned_cols=37 Identities=8% Similarity=0.109 Sum_probs=30.4
Q ss_pred CCCeEEEEechhhHHHHHHHHHHhcCCeEEEeeCCcc
Q psy2047 193 NGHRVLIFSQFIFVLDILGHYMDIRGWRHLRLDGATQ 229 (233)
Q Consensus 193 ~~~KvlIFSq~~~~Ld~l~~~l~~~gi~~~rldG~~~ 229 (233)
.+.++||+|+.-..-......|...|++...++|++.
T Consensus 54 ~~~~ivvyC~~G~rs~~aa~~L~~~G~~v~~l~GG~~ 90 (108)
T 3gk5_A 54 RDKKYAVICAHGNRSAAAVEFLSQLGLNIVDVEGGIQ 90 (108)
T ss_dssp TTSCEEEECSSSHHHHHHHHHHHTTTCCEEEETTHHH
T ss_pred CCCeEEEEcCCCcHHHHHHHHHHHcCCCEEEEcCcHH
Confidence 3568999998766667778889999999899999864
No 55
>2whx_A Serine protease/ntpase/helicase NS3; transcription, hydrolase, ATP-binding, reticulum, nucleotidyltransferase, multifunctional enzyme; HET: ADP; 2.20A {Dengue virus 4} PDB: 2vbc_A 2wzq_A
Probab=70.76 E-value=4.7 Score=35.78 Aligned_cols=40 Identities=13% Similarity=0.099 Sum_probs=35.1
Q ss_pred hHHHhCCCeEEEEechhhHHHHHHHHHHhcCCeEEEeeCC
Q psy2047 188 PDLKKNGHRVLIFSQFIFVLDILGHYMDIRGWRHLRLDGA 227 (233)
Q Consensus 188 ~~~~~~~~KvlIFSq~~~~Ld~l~~~l~~~gi~~~rldG~ 227 (233)
..+.+.+.++|||+......+.+...|...|++...++|+
T Consensus 349 ~~l~~~~~~~LVF~~s~~~a~~l~~~L~~~g~~v~~lhg~ 388 (618)
T 2whx_A 349 DWITDYQGKTVWFVPSIKAGNDIANCLRKSGKRVIQLSRK 388 (618)
T ss_dssp HHHHHCCSCEEEECSSHHHHHHHHHHHHHTTCCEEEECTT
T ss_pred HHHHhCCCCEEEEECChhHHHHHHHHHHHcCCcEEEEChH
Confidence 3334457799999999999999999999999999999996
No 56
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=70.58 E-value=4.5 Score=36.95 Aligned_cols=55 Identities=9% Similarity=0.024 Sum_probs=40.3
Q ss_pred cHHHHHHHHhHHH-h-CCCeEEEEechhhHHHHHHHHHHh-----------cCCeEEEeeCCcccCCC
Q psy2047 179 KLKKLDEILPDLK-K-NGHRVLIFSQFIFVLDILGHYMDI-----------RGWRHLRLDGATQVSSR 233 (233)
Q Consensus 179 Kl~~l~~lL~~~~-~-~~~KvlIFSq~~~~Ld~l~~~l~~-----------~gi~~~rldG~~~~~~R 233 (233)
++...+..+..+. . .+.++|||+......+.+...|.. .++....++|+++..+|
T Consensus 286 ~~~~~l~~l~~~~~~~~~g~iLVF~~~~~~i~~l~~~L~~~~~~l~~~~~~~~~~v~~lhg~l~~~eR 353 (773)
T 2xau_A 286 YLDSAIRTVLQIHATEEAGDILLFLTGEDEIEDAVRKISLEGDQLVREEGCGPLSVYPLYGSLPPHQQ 353 (773)
T ss_dssp HHHHHHHHHHHHHHHSCSCEEEEECSCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECTTCCHHHH
T ss_pred HHHHHHHHHHHHHHhcCCCCEEEECCCHHHHHHHHHHHHHHHHhhcccccCCCeEEEEeCCCCCHHHH
Confidence 3444444443332 2 367999999999999999999875 68899999999986543
No 57
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=68.85 E-value=9.8 Score=33.80 Aligned_cols=50 Identities=28% Similarity=0.303 Sum_probs=46.5
Q ss_pred ccccHHHHHHHHhHHHhCCCeEEEEechhhHHHHHHHHHHhcCCeEEEee
Q psy2047 176 ESGKLKKLDEILPDLKKNGHRVLIFSQFIFVLDILGHYMDIRGWRHLRLD 225 (233)
Q Consensus 176 ~s~Kl~~l~~lL~~~~~~~~KvlIFSq~~~~Ld~l~~~l~~~gi~~~rld 225 (233)
.+||-..+..++..+...+.+|||-+......|-|...|...+.+.+|+.
T Consensus 215 GTGKT~ti~~~I~~l~~~~~~ILv~a~TN~AvD~i~erL~~~~~~ilRlG 264 (646)
T 4b3f_X 215 GTGKTTTVVEIILQAVKQGLKVLCCAPSNIAVDNLVERLALCKQRILRLG 264 (646)
T ss_dssp TSCHHHHHHHHHHHHHHTTCCEEEEESSHHHHHHHHHHHHHTTCCEEECS
T ss_pred CCCHHHHHHHHHHHHHhCCCeEEEEcCchHHHHHHHHHHHhcCCceEEec
Confidence 38999999999999999999999999999999999999999999999984
No 58
>2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane, nucleotide-binding, RNA replication, transmembrane, viral protein; 1.80A {Japanese encephalitis virus} PDB: 2v8o_A 2qeq_A
Probab=67.43 E-value=6.1 Score=33.52 Aligned_cols=36 Identities=8% Similarity=0.152 Sum_probs=33.2
Q ss_pred hCCCeEEEEechhhHHHHHHHHHHhcCCeEEEeeCC
Q psy2047 192 KNGHRVLIFSQFIFVLDILGHYMDIRGWRHLRLDGA 227 (233)
Q Consensus 192 ~~~~KvlIFSq~~~~Ld~l~~~l~~~gi~~~rldG~ 227 (233)
..+.++|||+......+.+...|...|+.+..++|.
T Consensus 188 ~~~~~~LVF~~s~~~~~~l~~~L~~~g~~v~~lh~~ 223 (459)
T 2z83_A 188 EYAGKTVWFVASVKMGNEIAMCLQRAGKKVIQLNRK 223 (459)
T ss_dssp HCCSCEEEECSCHHHHHHHHHHHHHTTCCEEEESTT
T ss_pred hcCCCEEEEeCChHHHHHHHHHHHhcCCcEEecCHH
Confidence 346799999999999999999999999999999996
No 59
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=67.05 E-value=1.4 Score=35.04 Aligned_cols=37 Identities=22% Similarity=0.274 Sum_probs=30.9
Q ss_pred CCCeEEEEechhhHHHHHHHHHHhcCCeEEEeeCCcccCCC
Q psy2047 193 NGHRVLIFSQFIFVLDILGHYMDIRGWRHLRLDGATQVSSR 233 (233)
Q Consensus 193 ~~~KvlIFSq~~~~Ld~l~~~l~~~gi~~~rldG~~~~~~R 233 (233)
.+.++|||+..+...+.+...|. .+..++|+++..+|
T Consensus 219 ~~~~~lvf~~~~~~~~~l~~~l~----~~~~~~~~~~~~~r 255 (337)
T 2z0m_A 219 KDKGVIVFVRTRNRVAKLVRLFD----NAIELRGDLPQSVR 255 (337)
T ss_dssp CCSSEEEECSCHHHHHHHHTTCT----TEEEECTTSCHHHH
T ss_pred CCCcEEEEEcCHHHHHHHHHHhh----hhhhhcCCCCHHHH
Confidence 46799999999999999988886 57789999886543
No 60
>3ipz_A Monothiol glutaredoxin-S14, chloroplastic; electron transport, PL redox-active center, transit peptide, transport, oxidoreduc; 2.40A {Arabidopsis thaliana} PDB: 2lku_A
Probab=66.62 E-value=13 Score=24.50 Aligned_cols=40 Identities=10% Similarity=0.150 Sum_probs=27.1
Q ss_pred HHHhHHHhCCCeEEEEec------hhhHHHHHHHHHHhcCCeEEEee
Q psy2047 185 EILPDLKKNGHRVLIFSQ------FIFVLDILGHYMDIRGWRHLRLD 225 (233)
Q Consensus 185 ~lL~~~~~~~~KvlIFSq------~~~~Ld~l~~~l~~~gi~~~rld 225 (233)
+.|+.+.. .++|+||+. +=.+=.-...+|...|++|..+|
T Consensus 9 ~~v~~~i~-~~~Vvvy~k~t~~~p~Cp~C~~ak~~L~~~gi~~~~~d 54 (109)
T 3ipz_A 9 DTLEKLVN-SEKVVLFMKGTRDFPMCGFSNTVVQILKNLNVPFEDVN 54 (109)
T ss_dssp HHHHHHHT-SSSEEEEESBCSSSBSSHHHHHHHHHHHHTTCCCEEEE
T ss_pred HHHHHHHc-cCCEEEEEecCCCCCCChhHHHHHHHHHHcCCCcEEEE
Confidence 44444433 368999998 45666667777777888877665
No 61
>3iwh_A Rhodanese-like domain protein; alpha-beta-alpha sandwich, structural genomics, C structural genomics of infectious diseases, csgid; 2.00A {Staphylococcus aureus subsp} PDB: 3mzz_A
Probab=64.19 E-value=5.8 Score=26.07 Aligned_cols=37 Identities=11% Similarity=0.143 Sum_probs=28.4
Q ss_pred CCCeEEEEechhhHHHHHHHHHHhcCCeEEEeeCCcc
Q psy2047 193 NGHRVLIFSQFIFVLDILGHYMDIRGWRHLRLDGATQ 229 (233)
Q Consensus 193 ~~~KvlIFSq~~~~Ld~l~~~l~~~gi~~~rldG~~~ 229 (233)
.+.+++|+|..=..=......|...|++.+.+.|++.
T Consensus 55 ~~~~ivv~C~~G~rS~~aa~~L~~~G~~~~~l~GG~~ 91 (103)
T 3iwh_A 55 KNEIYYIVCAGGVRSAKVVEYLEANGIDAVNVEGGMH 91 (103)
T ss_dssp TTSEEEEECSSSSHHHHHHHHHHTTTCEEEEETTHHH
T ss_pred CCCeEEEECCCCHHHHHHHHHHHHcCCCEEEecChHH
Confidence 3568899987654445667788999999889999864
No 62
>3foj_A Uncharacterized protein; protein SSP1007, structural genomics, PSI-2, protein structure initiative; 1.60A {Staphylococcus saprophyticus subsp}
Probab=63.87 E-value=6.5 Score=25.34 Aligned_cols=37 Identities=11% Similarity=0.172 Sum_probs=30.4
Q ss_pred CCCeEEEEechhhHHHHHHHHHHhcCCeEEEeeCCcc
Q psy2047 193 NGHRVLIFSQFIFVLDILGHYMDIRGWRHLRLDGATQ 229 (233)
Q Consensus 193 ~~~KvlIFSq~~~~Ld~l~~~l~~~gi~~~rldG~~~ 229 (233)
.+.++||+|..-..-......|...|++...++|++.
T Consensus 55 ~~~~ivvyC~~g~rs~~a~~~L~~~G~~v~~l~GG~~ 91 (100)
T 3foj_A 55 DNETYYIICKAGGRSAQVVQYLEQNGVNAVNVEGGMD 91 (100)
T ss_dssp TTSEEEEECSSSHHHHHHHHHHHTTTCEEEEETTHHH
T ss_pred CCCcEEEEcCCCchHHHHHHHHHHCCCCEEEecccHH
Confidence 3568999998776667778888999999899999864
No 63
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A
Probab=63.15 E-value=6.6 Score=37.46 Aligned_cols=47 Identities=23% Similarity=0.122 Sum_probs=41.4
Q ss_pred cccHHHHHHHHhHHHhCCCeEEEEechhhHHHHHHHHHHhcCCeEE-EeeC
Q psy2047 177 SGKLKKLDEILPDLKKNGHRVLIFSQFIFVLDILGHYMDIRGWRHL-RLDG 226 (233)
Q Consensus 177 s~Kl~~l~~lL~~~~~~~~KvlIFSq~~~~Ld~l~~~l~~~gi~~~-rldG 226 (233)
..|...+.++|... +.++|||+......+.+...|...|++.. .++|
T Consensus 295 ~~k~~~L~~ll~~~---~~~~LVF~~s~~~a~~l~~~L~~~g~~~~~~lhg 342 (1104)
T 4ddu_A 295 SRSKEKLVELLEIF---RDGILIFAQTEEEGKELYEYLKRFKFNVGETWSE 342 (1104)
T ss_dssp CCCHHHHHHHHHHH---CSSEEEEESSSHHHHHHHHHHHHTTCCEEESSSS
T ss_pred cCHHHHHHHHHHhc---CCCEEEEECcHHHHHHHHHHHHhCCCCeeeEecC
Confidence 36888888888773 58999999999999999999999999987 8887
No 64
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=63.05 E-value=6.6 Score=32.98 Aligned_cols=37 Identities=22% Similarity=0.188 Sum_probs=33.5
Q ss_pred hCCCeEEEEechhhHHHHHHHHHHhcCCeEEEeeCCc
Q psy2047 192 KNGHRVLIFSQFIFVLDILGHYMDIRGWRHLRLDGAT 228 (233)
Q Consensus 192 ~~~~KvlIFSq~~~~Ld~l~~~l~~~gi~~~rldG~~ 228 (233)
..+.++|||+..+...+.+...|...|++...++|++
T Consensus 169 ~~~~~~lVF~~~~~~~~~l~~~L~~~~~~v~~lhg~~ 205 (431)
T 2v6i_A 169 EFDGRTVWFVHSIKQGAEIGTCLQKAGKKVLYLNRKT 205 (431)
T ss_dssp SCSSCEEEECSSHHHHHHHHHHHHHTTCCEEEESTTT
T ss_pred cCCCCEEEEeCCHHHHHHHHHHHHHcCCeEEEeCCcc
Confidence 3466999999999999999999999999999999974
No 65
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=61.84 E-value=3 Score=38.15 Aligned_cols=57 Identities=11% Similarity=0.146 Sum_probs=41.2
Q ss_pred cccHHHHHHHHhHHHhCCCeEEEEechh--------hHHHHHHHHHHh---cCCeEEEeeCCcccCCC
Q psy2047 177 SGKLKKLDEILPDLKKNGHRVLIFSQFI--------FVLDILGHYMDI---RGWRHLRLDGATQVSSR 233 (233)
Q Consensus 177 s~Kl~~l~~lL~~~~~~~~KvlIFSq~~--------~~Ld~l~~~l~~---~gi~~~rldG~~~~~~R 233 (233)
..+...+.+.+.+....+.+++||+..+ .....+...|.. .|+....++|+|+.++|
T Consensus 561 ~~~~~~l~~~i~~~l~~g~qvlVf~~~ie~se~l~~~~a~~l~~~L~~~~~~~~~v~~lHG~m~~~eR 628 (780)
T 1gm5_A 561 MDRVNEVYEFVRQEVMRGGQAFIVYPLIEESDKLNVKSAVEMYEYLSKEVFPEFKLGLMHGRLSQEEK 628 (780)
T ss_dssp SSTHHHHHHHHHHHTTTSCCBCCBCCCC--------CHHHHHHHSGGGSCC---CBCCCCSSSCCSCS
T ss_pred cchHHHHHHHHHHHHhcCCcEEEEecchhhhhhhhHHHHHHHHHHHHhhhcCCCcEEEEeCCCCHHHH
Confidence 4566677777776667788999999855 345666677777 57899999999998776
No 66
>2wv9_A Flavivirin protease NS2B regulatory subunit, FLAV protease NS3 catalytic subunit; nucleotide-binding, capsid protein; 2.75A {Murray valley encephalitis virus}
Probab=61.58 E-value=6.8 Score=35.16 Aligned_cols=38 Identities=11% Similarity=0.223 Sum_probs=34.2
Q ss_pred HHhCCCeEEEEechhhHHHHHHHHHHhcCCeEEEeeCC
Q psy2047 190 LKKNGHRVLIFSQFIFVLDILGHYMDIRGWRHLRLDGA 227 (233)
Q Consensus 190 ~~~~~~KvlIFSq~~~~Ld~l~~~l~~~gi~~~rldG~ 227 (233)
+...+.++|||+..+...+.+...|...|++...++|+
T Consensus 406 l~~~~~~~lVF~~s~~~~e~la~~L~~~g~~v~~lHg~ 443 (673)
T 2wv9_A 406 ITDYAGKTVWFVASVKMSNEIAQCLQRAGKRVIQLNRK 443 (673)
T ss_dssp HHSCCSCEEEECSSHHHHHHHHHHHHTTTCCEEEECSS
T ss_pred HHhCCCCEEEEECCHHHHHHHHHHHHhCCCeEEEeChH
Confidence 34457899999999999999999999999999999995
No 67
>3zyw_A Glutaredoxin-3; metal binding protein; 1.84A {Homo sapiens}
Probab=61.21 E-value=19 Score=23.78 Aligned_cols=40 Identities=10% Similarity=0.063 Sum_probs=25.8
Q ss_pred HHHhHHHhCCCeEEEEec------hhhHHHHHHHHHHhcCCeEEEee
Q psy2047 185 EILPDLKKNGHRVLIFSQ------FIFVLDILGHYMDIRGWRHLRLD 225 (233)
Q Consensus 185 ~lL~~~~~~~~KvlIFSq------~~~~Ld~l~~~l~~~gi~~~rld 225 (233)
+.|+.+.. .++|+|||. +=..=.-....|+..|++|..+|
T Consensus 7 ~~v~~~i~-~~~Vvlf~kg~~~~~~Cp~C~~ak~~L~~~gi~y~~~d 52 (111)
T 3zyw_A 7 LRLKKLTH-AAPCMLFMKGTPQEPRCGFSKQMVEILHKHNIQFSSFD 52 (111)
T ss_dssp HHHHHHHT-SSSEEEEESBCSSSBSSHHHHHHHHHHHHTTCCCEEEE
T ss_pred HHHHHHHh-cCCEEEEEecCCCCCcchhHHHHHHHHHHcCCCeEEEE
Confidence 33444433 469999995 44555566667777888877665
No 68
>3eme_A Rhodanese-like domain protein; alpha-beta-alpha sandwich, structural genomics; 2.00A {Staphylococcus aureus subsp} PDB: 3iwh_A 3mzz_A
Probab=60.22 E-value=7.4 Score=25.19 Aligned_cols=37 Identities=11% Similarity=0.143 Sum_probs=30.3
Q ss_pred CCCeEEEEechhhHHHHHHHHHHhcCCeEEEeeCCcc
Q psy2047 193 NGHRVLIFSQFIFVLDILGHYMDIRGWRHLRLDGATQ 229 (233)
Q Consensus 193 ~~~KvlIFSq~~~~Ld~l~~~l~~~gi~~~rldG~~~ 229 (233)
.+.++||+|..-..-......|...|++...++|++.
T Consensus 55 ~~~~iv~yC~~g~rs~~a~~~L~~~G~~v~~l~GG~~ 91 (103)
T 3eme_A 55 KNEIYYIVCAGGVRSAKVVEYLEANGIDAVNVEGGMH 91 (103)
T ss_dssp TTSEEEEECSSSSHHHHHHHHHHTTTCEEEEETTHHH
T ss_pred CCCeEEEECCCChHHHHHHHHHHHCCCCeEEeCCCHH
Confidence 3568999998776667778888999999899999864
No 69
>1wv9_A Rhodanese homolog TT1651; CDC25, phosphatase, sulfurtransferase, structural genomics, NPPSFA; 2.00A {Thermus thermophilus}
Probab=59.08 E-value=11 Score=23.84 Aligned_cols=36 Identities=17% Similarity=0.433 Sum_probs=29.4
Q ss_pred CeEEEEechhhHHHHHHHHHHhcCCeEEEeeCCccc
Q psy2047 195 HRVLIFSQFIFVLDILGHYMDIRGWRHLRLDGATQV 230 (233)
Q Consensus 195 ~KvlIFSq~~~~Ld~l~~~l~~~gi~~~rldG~~~~ 230 (233)
.++||+|+.-..-......|...|++...++|++..
T Consensus 54 ~~ivvyC~~g~rs~~a~~~L~~~G~~v~~l~GG~~~ 89 (94)
T 1wv9_A 54 RPLLLVCEKGLLSQVAALYLEAEGYEAMSLEGGLQA 89 (94)
T ss_dssp SCEEEECSSSHHHHHHHHHHHHHTCCEEEETTGGGC
T ss_pred CCEEEEcCCCChHHHHHHHHHHcCCcEEEEcccHHH
Confidence 689999988766677778888999997788998753
No 70
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=58.70 E-value=10 Score=33.99 Aligned_cols=34 Identities=12% Similarity=-0.023 Sum_probs=25.7
Q ss_pred HHHHhHHHhCCCeEEEEechhhHHHHHHHHHHhc
Q psy2047 184 DEILPDLKKNGHRVLIFSQFIFVLDILGHYMDIR 217 (233)
Q Consensus 184 ~~lL~~~~~~~~KvlIFSq~~~~Ld~l~~~l~~~ 217 (233)
.+.+.+....+.++|||+......+.+...|...
T Consensus 242 ~~~~~~~~~~~~~~LVF~~s~~~~~~~a~~L~~~ 275 (715)
T 2va8_A 242 IAYTLDSLSKNGQVLVFRNSRKMAESTALKIANY 275 (715)
T ss_dssp HHHHHHHHTTTCCEEEECSSHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhcCCCEEEEECCHHHHHHHHHHHHHH
Confidence 3444444456789999999999999998888754
No 71
>2jtq_A Phage shock protein E; solution structure rhodanese, stress response, transferase; NMR {Escherichia coli} PDB: 2jtr_A 2jts_A
Probab=57.45 E-value=24 Score=21.67 Aligned_cols=38 Identities=11% Similarity=0.111 Sum_probs=27.1
Q ss_pred CCCeEEEEechhhHHHHHHHHHHhcCCeEEEeeCCccc
Q psy2047 193 NGHRVLIFSQFIFVLDILGHYMDIRGWRHLRLDGATQV 230 (233)
Q Consensus 193 ~~~KvlIFSq~~~~Ld~l~~~l~~~gi~~~rldG~~~~ 230 (233)
.+.++||+|..-..-......|...|++-+.+-|++..
T Consensus 40 ~~~~ivv~C~~g~rs~~aa~~L~~~G~~~v~~lGG~~~ 77 (85)
T 2jtq_A 40 KNDTVKVYCNAGRQSGQAKEILSEMGYTHVENAGGLKD 77 (85)
T ss_dssp TTSEEEEEESSSHHHHHHHHHHHHTTCSSEEEEEETTT
T ss_pred CCCcEEEEcCCCchHHHHHHHHHHcCCCCEEeccCHHH
Confidence 35689999987666667788889999974433377643
No 72
>3anw_B GINS23, putative uncharacterized protein; SLD5 superfamily, DNA replication, replication; 2.65A {Thermococcus kodakarensis}
Probab=57.41 E-value=4.8 Score=29.35 Aligned_cols=54 Identities=13% Similarity=0.159 Sum_probs=40.0
Q ss_pred HHHHHHhhhhhhhhcchhhhh-hcCCCceEEEEEeeCCHHHHHHHHHHHHHHhhhc
Q psy2047 26 VDQAKRIISPFMLRRLKKDVL-TELPKKTALVIKVPMIPSQAEKYRGLMEDFKKTA 80 (233)
Q Consensus 26 ~~~L~~~l~~~~lRRtk~~~~-~~LP~k~e~~v~v~ls~~q~~lY~~~~~~~~~~~ 80 (233)
++.++..+..++.+|.+..+. ..+++.. ..+.=.|||+|+.+|..+.......+
T Consensus 114 lk~~~~~l~~L~~~Ri~KIv~la~~~~~~-~eil~rLTpEEk~iy~~l~~~i~~w~ 168 (171)
T 3anw_B 114 LANLRKKLRDLKLIRFNKILKAVMLRPNS-LELLSRLAPEERRIYLQMSKIRNEWL 168 (171)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTC--CC-HHHHTTSCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCc-HHHHhcCCHHHHHHHHHHHHHHHHHc
Confidence 788888899999999998753 2466633 44456799999999999987766554
No 73
>3gx8_A Monothiol glutaredoxin-5, mitochondrial; TRX fold, electron transport, mitochondrion, redox-active center, transit peptide, transport; 1.67A {Saccharomyces cerevisiae}
Probab=55.68 E-value=34 Score=22.92 Aligned_cols=40 Identities=10% Similarity=0.042 Sum_probs=26.4
Q ss_pred HHHhHHHhCCCeEEEEec------hhhHHHHHHHHHHhcCCe---EEEee
Q psy2047 185 EILPDLKKNGHRVLIFSQ------FIFVLDILGHYMDIRGWR---HLRLD 225 (233)
Q Consensus 185 ~lL~~~~~~~~KvlIFSq------~~~~Ld~l~~~l~~~gi~---~~rld 225 (233)
+.|+.+.. .++|+|||. |=..=.....+|...|++ |..+|
T Consensus 7 ~~v~~~i~-~~~Vvvfsk~t~~~p~Cp~C~~ak~lL~~~gv~~~~~~~~d 55 (121)
T 3gx8_A 7 KAIEDAIE-SAPVVLFMKGTPEFPKCGFSRATIGLLGNQGVDPAKFAAYN 55 (121)
T ss_dssp HHHHHHHH-SCSEEEEESBCSSSBCTTHHHHHHHHHHHHTBCGGGEEEEE
T ss_pred HHHHHHhc-cCCEEEEEeccCCCCCCccHHHHHHHHHHcCCCcceEEEEE
Confidence 44555443 368999998 445556666777777887 66555
No 74
>3hix_A ALR3790 protein; rhodanese, rhodanese_3, Q8YQN0, Q8YQN0_anAsp, NSR437I, NESG, structural genomics, PSI-2, protein structure initiative; 1.92A {Anabaena SP} PDB: 3k9r_A
Probab=55.34 E-value=13 Score=24.14 Aligned_cols=37 Identities=8% Similarity=0.090 Sum_probs=29.3
Q ss_pred CCCeEEEEechhhHHHHHHHHHHhcCCe-EEEeeCCcc
Q psy2047 193 NGHRVLIFSQFIFVLDILGHYMDIRGWR-HLRLDGATQ 229 (233)
Q Consensus 193 ~~~KvlIFSq~~~~Ld~l~~~l~~~gi~-~~rldG~~~ 229 (233)
.+.++||+|..-..-......|...|+. ...|+|++.
T Consensus 51 ~~~~ivvyc~~g~rs~~a~~~L~~~G~~~v~~l~GG~~ 88 (106)
T 3hix_A 51 KSRDIYVYGAGDEQTSQAVNLLRSAGFEHVSELKGGLA 88 (106)
T ss_dssp TTSCEEEECSSHHHHHHHHHHHHHTTCSCEEECTTHHH
T ss_pred CCCeEEEEECCCChHHHHHHHHHHcCCcCEEEecCCHH
Confidence 4568999998776667778888999996 777899764
No 75
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A
Probab=54.11 E-value=6.7 Score=35.19 Aligned_cols=32 Identities=13% Similarity=0.101 Sum_probs=24.0
Q ss_pred HHHhHHHhCCCeEEEEechhhHHHHHHHHHHh
Q psy2047 185 EILPDLKKNGHRVLIFSQFIFVLDILGHYMDI 216 (233)
Q Consensus 185 ~lL~~~~~~~~KvlIFSq~~~~Ld~l~~~l~~ 216 (233)
+++.+....+.++|||+......+.+...|..
T Consensus 233 ~~~~~~~~~~~~~LVF~~s~~~~~~~a~~L~~ 264 (702)
T 2p6r_A 233 ELVEECVAENGGVLVFESTRRGAEKTAVKLSA 264 (702)
T ss_dssp HHHHHHHHTTCCEEEECSSHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCCEEEEcCCHHHHHHHHHHHHH
Confidence 33333345678999999999998888887764
No 76
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A
Probab=52.95 E-value=28 Score=30.72 Aligned_cols=53 Identities=21% Similarity=0.240 Sum_probs=46.4
Q ss_pred hccccHHHHHHHHhHHHh-CCCeEEEEechhhHHHHHHHHHHhcCCeEEEeeCC
Q psy2047 175 VESGKLKKLDEILPDLKK-NGHRVLIFSQFIFVLDILGHYMDIRGWRHLRLDGA 227 (233)
Q Consensus 175 ~~s~Kl~~l~~lL~~~~~-~~~KvlIFSq~~~~Ld~l~~~l~~~gi~~~rldG~ 227 (233)
..+||-..+..++..+.. .+.+++|.+......+-|...+...|++.+|+.+.
T Consensus 204 pGTGKT~~~~~~i~~l~~~~~~~ilv~a~tn~A~~~l~~~l~~~~~~~~R~~~~ 257 (624)
T 2gk6_A 204 PGTGKTVTSATIVYHLARQGNGPVLVCAPSNIAVDQLTEKIHQTGLKVVRLCAK 257 (624)
T ss_dssp TTSCHHHHHHHHHHHHHTSSSCCEEEEESSHHHHHHHHHHHHTTTCCEEECCCT
T ss_pred CCCCHHHHHHHHHHHHHHcCCCeEEEEeCcHHHHHHHHHHHHhcCCeEEeeccc
Confidence 348999999999988876 57899999999999999999999899999998764
No 77
>2yan_A Glutaredoxin-3; oxidoreductase; HET: GSH; 1.90A {Homo sapiens}
Probab=52.62 E-value=35 Score=21.93 Aligned_cols=40 Identities=18% Similarity=0.124 Sum_probs=24.2
Q ss_pred HHHhHHHhCCCeEEEEec------hhhHHHHHHHHHHhcCCeEEEee
Q psy2047 185 EILPDLKKNGHRVLIFSQ------FIFVLDILGHYMDIRGWRHLRLD 225 (233)
Q Consensus 185 ~lL~~~~~~~~KvlIFSq------~~~~Ld~l~~~l~~~gi~~~rld 225 (233)
+.+.++.. ..+++||+. |=..=..+...|...|++|..+|
T Consensus 8 ~~~~~~i~-~~~vvvf~~g~~~~~~C~~C~~~~~~L~~~~i~~~~vd 53 (105)
T 2yan_A 8 ERLKVLTN-KASVMLFMKGNKQEAKCGFSKQILEILNSTGVEYETFD 53 (105)
T ss_dssp HHHHHHHT-SSSEEEEESBCSSSBCTTHHHHHHHHHHHHTCCCEEEE
T ss_pred HHHHHHhc-cCCEEEEEecCCCCCCCccHHHHHHHHHHCCCCeEEEE
Confidence 33444433 347888874 44555566667777777776665
No 78
>3tg1_B Dual specificity protein phosphatase 10; kinase/rhodanese-like domain, docking interaction, transfera hydrolase complex; 2.71A {Homo sapiens}
Probab=52.55 E-value=8.8 Score=27.17 Aligned_cols=36 Identities=17% Similarity=0.280 Sum_probs=30.1
Q ss_pred CCeEEEEechh---------hHHHHHHHHHHhcCCeEEEeeCCcc
Q psy2047 194 GHRVLIFSQFI---------FVLDILGHYMDIRGWRHLRLDGATQ 229 (233)
Q Consensus 194 ~~KvlIFSq~~---------~~Ld~l~~~l~~~gi~~~rldG~~~ 229 (233)
+..+||++..- .........|...|++...|+|++.
T Consensus 93 ~~~IVvyc~~g~~~~~~~~~~~s~~a~~~L~~~G~~v~~L~GG~~ 137 (158)
T 3tg1_B 93 SKEIIVYDENTNEPSRVMPSQPLHIVLESLKREGKEPLVLKGGLS 137 (158)
T ss_dssp TSCEEEECSCCSCTTSCCSSSHHHHHHHHHHTTTCCEEEETTHHH
T ss_pred CCeEEEEECCCCcccccCcchHHHHHHHHHHhCCCcEEEeCCcHH
Confidence 56899999887 4677888889999999999999864
No 79
>1gmx_A GLPE protein; transferase, rhodanese, sulfurtransferase, glycerol metabolism; 1.1A {Escherichia coli} SCOP: c.46.1.3 PDB: 1gn0_A
Probab=49.63 E-value=21 Score=23.15 Aligned_cols=37 Identities=14% Similarity=0.176 Sum_probs=29.5
Q ss_pred CCCeEEEEechhhHHHHHHHHHHhcCCe-EEEeeCCcc
Q psy2047 193 NGHRVLIFSQFIFVLDILGHYMDIRGWR-HLRLDGATQ 229 (233)
Q Consensus 193 ~~~KvlIFSq~~~~Ld~l~~~l~~~gi~-~~rldG~~~ 229 (233)
.+.++||+|..-..-......|...|+. ...++|++.
T Consensus 57 ~~~~ivvyc~~g~rs~~a~~~L~~~G~~~v~~l~GG~~ 94 (108)
T 1gmx_A 57 FDTPVMVMCYHGNSSKGAAQYLLQQGYDVVYSIDGGFE 94 (108)
T ss_dssp TTSCEEEECSSSSHHHHHHHHHHHHTCSSEEEETTHHH
T ss_pred CCCCEEEEcCCCchHHHHHHHHHHcCCceEEEecCCHH
Confidence 4568999999876677778888999996 778899763
No 80
>2fsx_A RV0390, COG0607: rhodanese-related sulfurtransferase; RV0390 BR SAD DATA with FBAR, structural genomics, PSI; 1.80A {Mycobacterium tuberculosis}
Probab=49.06 E-value=24 Score=24.43 Aligned_cols=37 Identities=5% Similarity=-0.135 Sum_probs=28.1
Q ss_pred CCCeEEEEechhhHHHHHHHHHHhcCCe-EEEeeCCcc
Q psy2047 193 NGHRVLIFSQFIFVLDILGHYMDIRGWR-HLRLDGATQ 229 (233)
Q Consensus 193 ~~~KvlIFSq~~~~Ld~l~~~l~~~gi~-~~rldG~~~ 229 (233)
.+.++||+|+.-..-......|...|+. ...++|++.
T Consensus 79 ~~~~ivvyC~~G~rS~~aa~~L~~~G~~~v~~l~GG~~ 116 (148)
T 2fsx_A 79 HERPVIFLCRSGNRSIGAAEVATEAGITPAYNVLDGFE 116 (148)
T ss_dssp --CCEEEECSSSSTHHHHHHHHHHTTCCSEEEETTTTT
T ss_pred CCCEEEEEcCCChhHHHHHHHHHHcCCcceEEEcCChh
Confidence 4568999998755556777888999995 888999984
No 81
>2xgj_A ATP-dependent RNA helicase DOB1; hydrolase-RNA complex, hydrolase, tramp, exosome, DEAD, nucleotide-binding; HET: ADP; 2.90A {Saccharomyces cerevisiae}
Probab=48.94 E-value=11 Score=35.64 Aligned_cols=38 Identities=18% Similarity=0.129 Sum_probs=28.3
Q ss_pred HHHHHHhHHHhCC-CeEEEEechhhHHHHHHHHHHhcCC
Q psy2047 182 KLDEILPDLKKNG-HRVLIFSQFIFVLDILGHYMDIRGW 219 (233)
Q Consensus 182 ~l~~lL~~~~~~~-~KvlIFSq~~~~Ld~l~~~l~~~gi 219 (233)
.+..++..+...+ .++|||+......+.+...|...|+
T Consensus 330 ~l~~l~~~l~~~~~~~~IVF~~sr~~~e~la~~L~~~~~ 368 (1010)
T 2xgj_A 330 DIYKIVKMIWKKKYNPVIVFSFSKRDCEELALKMSKLDF 368 (1010)
T ss_dssp HHHHHHHHHHHHTCCSEEEEESSHHHHHHHHHTTTTSCC
T ss_pred HHHHHHHHHHhcCCCCEEEEECCHHHHHHHHHHHHhCCC
Confidence 3445555555444 5999999999999999998877554
No 82
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=48.74 E-value=11 Score=33.82 Aligned_cols=28 Identities=14% Similarity=0.127 Sum_probs=22.5
Q ss_pred HHHhCCCeEEEEechhhHHHHHHHHHHh
Q psy2047 189 DLKKNGHRVLIFSQFIFVLDILGHYMDI 216 (233)
Q Consensus 189 ~~~~~~~KvlIFSq~~~~Ld~l~~~l~~ 216 (233)
+....+.++|||+......+.+...|..
T Consensus 232 ~~~~~~~~~LVF~~sr~~~~~~a~~L~~ 259 (720)
T 2zj8_A 232 DAIRKKKGALIFVNMRRKAERVALELSK 259 (720)
T ss_dssp HHHHTTCCEEEECSCHHHHHHHHHHHHH
T ss_pred HHHhCCCCEEEEecCHHHHHHHHHHHHH
Confidence 3335678999999999999888888865
No 83
>3nhv_A BH2092 protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 2.50A {Bacillus halodurans} PDB: 3o3w_A
Probab=48.72 E-value=17 Score=25.23 Aligned_cols=37 Identities=11% Similarity=0.021 Sum_probs=28.7
Q ss_pred CCCeEEEEechh--hHHHHHHHHHHhcCCeEEEeeCCcc
Q psy2047 193 NGHRVLIFSQFI--FVLDILGHYMDIRGWRHLRLDGATQ 229 (233)
Q Consensus 193 ~~~KvlIFSq~~--~~Ld~l~~~l~~~gi~~~rldG~~~ 229 (233)
.+.++||+|..- ..-......|...|++...|+|++.
T Consensus 71 ~~~~ivvyC~~g~~~rs~~aa~~L~~~G~~v~~l~GG~~ 109 (144)
T 3nhv_A 71 KEKVIITYCWGPACNGATKAAAKFAQLGFRVKELIGGIE 109 (144)
T ss_dssp TTSEEEEECSCTTCCHHHHHHHHHHHTTCEEEEEESHHH
T ss_pred CCCeEEEEECCCCccHHHHHHHHHHHCCCeEEEeCCcHH
Confidence 356899998875 3556677888999999888999864
No 84
>3flh_A Uncharacterized protein LP_1913; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.00A {Lactobacillus plantarum} PDB: 3fnj_A 3i3u_A
Probab=48.18 E-value=10 Score=25.52 Aligned_cols=36 Identities=11% Similarity=0.024 Sum_probs=28.7
Q ss_pred CCeEEEEechhhH--HHHHHHHHHhcCCeEEEeeCCcc
Q psy2047 194 GHRVLIFSQFIFV--LDILGHYMDIRGWRHLRLDGATQ 229 (233)
Q Consensus 194 ~~KvlIFSq~~~~--Ld~l~~~l~~~gi~~~rldG~~~ 229 (233)
+.++||+|..-.. -......|...|++...++|++.
T Consensus 71 ~~~ivvyC~~g~r~~s~~a~~~L~~~G~~v~~l~GG~~ 108 (124)
T 3flh_A 71 AKTYVVYDWTGGTTLGKTALLVLLSAGFEAYELAGALE 108 (124)
T ss_dssp TSEEEEECSSSSCSHHHHHHHHHHHHTCEEEEETTHHH
T ss_pred CCeEEEEeCCCCchHHHHHHHHHHHcCCeEEEeCCcHH
Confidence 5689999987654 56778888999999888899864
No 85
>2ipc_A Preprotein translocase SECA subunit; nucleotide binding fold, ATPase, parallel dimer; 2.80A {Thermus thermophilus}
Probab=47.96 E-value=22 Score=33.26 Aligned_cols=39 Identities=21% Similarity=0.229 Sum_probs=35.9
Q ss_pred cccHHHHHHHHhHHHhCCCeEEEEechhhHHHHHHHHHH
Q psy2047 177 SGKLKKLDEILPDLKKNGHRVLIFSQFIFVLDILGHYMD 215 (233)
Q Consensus 177 s~Kl~~l~~lL~~~~~~~~KvlIFSq~~~~Ld~l~~~l~ 215 (233)
..|+.++++-+.+....|.-|||+|.++..-++|..+|+
T Consensus 426 ~~K~~AIv~eI~~~~~~GqPVLVgT~SIe~SE~LS~~L~ 464 (997)
T 2ipc_A 426 KGKFYAVVEEIAEKYERGQPVLVGTISIEKSERLSQMLK 464 (997)
T ss_dssp HHHHHHHHHHHHHHHHHTCCEEEECSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCCEEEEeCCHHHHHHHHHHHh
Confidence 688999998888888889999999999999999999998
No 86
>2wem_A Glutaredoxin-related protein 5; chromosome 14 open reading frame 87, Fe/S cluster, oxidoreductase, thioredoxin family, GLRX5, FLB4739, C14ORF87; HET: GTT; 2.40A {Homo sapiens} PDB: 2wul_A*
Probab=47.52 E-value=31 Score=23.15 Aligned_cols=31 Identities=13% Similarity=0.218 Sum_probs=23.3
Q ss_pred CeEEEEec------hhhHHHHHHHHHHhcCCe-EEEee
Q psy2047 195 HRVLIFSQ------FIFVLDILGHYMDIRGWR-HLRLD 225 (233)
Q Consensus 195 ~KvlIFSq------~~~~Ld~l~~~l~~~gi~-~~rld 225 (233)
++|+|||. +=..=.-...+|...|++ |..+|
T Consensus 20 ~~Vvvfsk~t~~~p~Cp~C~~ak~lL~~~gv~~~~~vd 57 (118)
T 2wem_A 20 DKVVVFLKGTPEQPQCGFSNAVVQILRLHGVRDYAAYN 57 (118)
T ss_dssp SSEEEEESBCSSSBSSHHHHHHHHHHHHTTCCCCEEEE
T ss_pred CCEEEEEecCCCCCccHHHHHHHHHHHHcCCCCCEEEE
Confidence 58999988 456666777778888884 77665
No 87
>2hhg_A Hypothetical protein RPA3614; MCSG, structural genomics, rohopseudom palustris, PSI-2, protein structure initiative; 1.20A {Rhodopseudomonas palustris}
Probab=45.97 E-value=17 Score=24.87 Aligned_cols=38 Identities=5% Similarity=0.112 Sum_probs=29.6
Q ss_pred hCCCeEEEEechhhHHHHHHHHHHhcCCe-EEEeeCCcc
Q psy2047 192 KNGHRVLIFSQFIFVLDILGHYMDIRGWR-HLRLDGATQ 229 (233)
Q Consensus 192 ~~~~KvlIFSq~~~~Ld~l~~~l~~~gi~-~~rldG~~~ 229 (233)
..+.++||+|+.-..=......|...|+. ...|+|++.
T Consensus 84 ~~~~~ivvyC~~G~rs~~a~~~L~~~G~~~v~~l~GG~~ 122 (139)
T 2hhg_A 84 QEDKKFVFYCAGGLRSALAAKTAQDMGLKPVAHIEGGFG 122 (139)
T ss_dssp GSSSEEEEECSSSHHHHHHHHHHHHHTCCSEEEETTHHH
T ss_pred CCCCeEEEECCCChHHHHHHHHHHHcCCCCeEEecCCHH
Confidence 34568999998866556777888999996 888999764
No 88
>3rc3_A ATP-dependent RNA helicase SUPV3L1, mitochondrial; SUV3, nucleus, hydrolase; HET: ANP; 2.08A {Homo sapiens} PDB: 3rc8_A
Probab=45.94 E-value=9 Score=34.41 Aligned_cols=39 Identities=13% Similarity=0.082 Sum_probs=33.6
Q ss_pred CeEEEEechhhHHHHHHHHHHhcCCeEEEeeCCcccCCC
Q psy2047 195 HRVLIFSQFIFVLDILGHYMDIRGWRHLRLDGATQVSSR 233 (233)
Q Consensus 195 ~KvlIFSq~~~~Ld~l~~~l~~~gi~~~rldG~~~~~~R 233 (233)
...+||+......+.+...|...|+....++|+++..+|
T Consensus 321 ~g~iIf~~s~~~ie~la~~L~~~g~~v~~lHG~L~~~~R 359 (677)
T 3rc3_A 321 PGDCIVCFSKNDIYSVSRQIEIRGLESAVIYGSLPPGTK 359 (677)
T ss_dssp TTEEEECSSHHHHHHHHHHHHHTTCCCEEECTTSCHHHH
T ss_pred CCCEEEEcCHHHHHHHHHHHHhcCCCeeeeeccCCHHHH
Confidence 345778888999999999999999999999999987644
No 89
>2k0z_A Uncharacterized protein HP1203; A/B domain, structural genomics, unknown function, PSI-2, PR structure initiative; NMR {Helicobacter pylori}
Probab=45.69 E-value=30 Score=22.54 Aligned_cols=38 Identities=16% Similarity=0.079 Sum_probs=29.6
Q ss_pred CCCeEEEEechhhHHHHHHHHHHhcCCeEEEeeCCccc
Q psy2047 193 NGHRVLIFSQFIFVLDILGHYMDIRGWRHLRLDGATQV 230 (233)
Q Consensus 193 ~~~KvlIFSq~~~~Ld~l~~~l~~~gi~~~rldG~~~~ 230 (233)
.+.++||+|..-..-......|...|+.-..++|++..
T Consensus 55 ~~~~ivvyC~~G~rs~~aa~~L~~~G~~~~~l~GG~~~ 92 (110)
T 2k0z_A 55 KDKKVLLHCRAGRRALDAAKSMHELGYTPYYLEGNVYD 92 (110)
T ss_dssp SSSCEEEECSSSHHHHHHHHHHHHTTCCCEEEESCGGG
T ss_pred CCCEEEEEeCCCchHHHHHHHHHHCCCCEEEecCCHHH
Confidence 45689999987666667788889999865788998753
No 90
>1tq1_A AT5G66040, senescence-associated family protein; CESG, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana} SCOP: c.46.1.3
Probab=45.45 E-value=17 Score=24.59 Aligned_cols=37 Identities=8% Similarity=-0.111 Sum_probs=29.1
Q ss_pred CCCeEEEEechhhHHHHHHHHHHhcCCe-EEEeeCCcc
Q psy2047 193 NGHRVLIFSQFIFVLDILGHYMDIRGWR-HLRLDGATQ 229 (233)
Q Consensus 193 ~~~KvlIFSq~~~~Ld~l~~~l~~~gi~-~~rldG~~~ 229 (233)
.+.++||+|..-..-......|...|+. ...++|++.
T Consensus 81 ~~~~ivvyC~~G~rs~~aa~~L~~~G~~~v~~l~GG~~ 118 (129)
T 1tq1_A 81 QSDNIIVGCQSGGRSIKATTDLLHAGFTGVKDIVGGYS 118 (129)
T ss_dssp TTSSEEEEESSCSHHHHHHHHHHHHHCCSEEEEECCHH
T ss_pred CCCeEEEECCCCcHHHHHHHHHHHcCCCCeEEeCCcHH
Confidence 4568999999766666777888888996 777999864
No 91
>2xzl_A ATP-dependent helicase NAM7; hydrolase-RNA complex, NMD, RNA degradation, allosteric REGU; HET: ADP 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=45.27 E-value=38 Score=31.04 Aligned_cols=53 Identities=23% Similarity=0.275 Sum_probs=46.0
Q ss_pred hccccHHHHHHHHhHHHh-CCCeEEEEechhhHHHHHHHHHHhcCCeEEEeeCC
Q psy2047 175 VESGKLKKLDEILPDLKK-NGHRVLIFSQFIFVLDILGHYMDIRGWRHLRLDGA 227 (233)
Q Consensus 175 ~~s~Kl~~l~~lL~~~~~-~~~KvlIFSq~~~~Ld~l~~~l~~~gi~~~rldG~ 227 (233)
..+||-..+..++..+.. .+.+++|.+......+-|...|...|++.+|+.+.
T Consensus 384 pGTGKT~~i~~~i~~l~~~~~~~ILv~a~tn~A~d~l~~rL~~~g~~ilR~g~~ 437 (802)
T 2xzl_A 384 PGTGKTVTSATIVYHLSKIHKDRILVCAPSNVAVDHLAAKLRDLGLKVVRLTAK 437 (802)
T ss_dssp TTSSHHHHHHHHHHHHHHHHCCCEEEEESSHHHHHHHHHHHHHTTCCEEECCCG
T ss_pred CCCCHHHHHHHHHHHHHhCCCCeEEEEcCcHHHHHHHHHHHHhhCccEEeeccc
Confidence 348999999999988765 57899999999999999999999999999998654
No 92
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B*
Probab=45.15 E-value=9 Score=36.31 Aligned_cols=50 Identities=14% Similarity=0.185 Sum_probs=42.2
Q ss_pred ccccHHHHHHHHhHHHhCCCeEEEEechhhHHHHHHHHHHhcCCeEEEeeCCcc
Q psy2047 176 ESGKLKKLDEILPDLKKNGHRVLIFSQFIFVLDILGHYMDIRGWRHLRLDGATQ 229 (233)
Q Consensus 176 ~s~Kl~~l~~lL~~~~~~~~KvlIFSq~~~~Ld~l~~~l~~~gi~~~rldG~~~ 229 (233)
...|...+.+++... +.++|||+......+.+...|... ++...++|++.
T Consensus 260 ~~~k~~~L~~ll~~~---~~~~LVF~~t~~~a~~l~~~L~~~-~~v~~lhg~~~ 309 (1054)
T 1gku_B 260 NDESISTLSSILEKL---GTGGIIYARTGEEAEEIYESLKNK-FRIGIVTATKK 309 (1054)
T ss_dssp SCCCTTTTHHHHTTS---CSCEEEEESSHHHHHHHHHTTTTS-SCEEECTTSSS
T ss_pred chhHHHHHHHHHhhc---CCCEEEEEcCHHHHHHHHHHHhhc-cCeeEEeccHH
Confidence 356777777777654 679999999999999999999888 99999999874
No 93
>2hfv_A Hypothetical protein RPA1041; NESG, GFT-alpha+beta, structural genomics, PSI-2, protein structure initiative; NMR {Pseudomonas aeruginosa} SCOP: d.58.5.5
Probab=42.54 E-value=36 Score=22.20 Aligned_cols=36 Identities=25% Similarity=0.301 Sum_probs=31.7
Q ss_pred CeEEEEechhhHHHHHHHHHHhcCCeEEEeeCCccc
Q psy2047 195 HRVLIFSQFIFVLDILGHYMDIRGWRHLRLDGATQV 230 (233)
Q Consensus 195 ~KvlIFSq~~~~Ld~l~~~l~~~gi~~~rldG~~~~ 230 (233)
.|-|+-++......++...|+.+||.+...|.-|+.
T Consensus 23 M~eL~ra~d~v~a~~~k~LLe~aGI~~fv~De~ms~ 58 (97)
T 2hfv_A 23 LRELLRTNDAVLLSAVGALLDGADIGHLVLDQNMSI 58 (97)
T ss_dssp EEEEEEECCHHHHHHHHHHHHHTTCCEECCSCCCCS
T ss_pred ceeeeecCCHHHHHHHHHHHHhCCCCEEEcCCcchh
Confidence 388899999999999999999999999988876653
No 94
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae}
Probab=41.63 E-value=13 Score=35.53 Aligned_cols=41 Identities=17% Similarity=0.073 Sum_probs=30.0
Q ss_pred HHHHHHHHhHHHhC-CCeEEEEechhhHHHHHHHHHHhcCCe
Q psy2047 180 LKKLDEILPDLKKN-GHRVLIFSQFIFVLDILGHYMDIRGWR 220 (233)
Q Consensus 180 l~~l~~lL~~~~~~-~~KvlIFSq~~~~Ld~l~~~l~~~gi~ 220 (233)
...+..++..+... +.++|||+......+.+...|...|+.
T Consensus 426 ~~~l~~li~~l~~~~~~~vIVF~~sr~~~e~la~~L~~~~~~ 467 (1108)
T 3l9o_A 426 KGDIYKIVKMIWKKKYNPVIVFSFSKRDCEELALKMSKLDFN 467 (1108)
T ss_dssp HHHHHHHHHHHHHTTCCCEEEEESCHHHHHHHHHHTCSHHHH
T ss_pred hhHHHHHHHHHHhcCCCCEEEEeCcHHHHHHHHHHHHhccCC
Confidence 44555666666555 459999999999999999888664443
No 95
>1qxn_A SUD, sulfide dehydrogenase; polysulfide-sulfur transferase, homodimer; NMR {Wolinella succinogenes} SCOP: c.46.1.3
Probab=41.29 E-value=22 Score=24.44 Aligned_cols=37 Identities=14% Similarity=0.272 Sum_probs=29.2
Q ss_pred CCCeEEEEechhhHHHHHHHHHHhcCCe-EEEeeCCcc
Q psy2047 193 NGHRVLIFSQFIFVLDILGHYMDIRGWR-HLRLDGATQ 229 (233)
Q Consensus 193 ~~~KvlIFSq~~~~Ld~l~~~l~~~gi~-~~rldG~~~ 229 (233)
.+.++||+|+.-..=......|...|+. ...++|++.
T Consensus 81 ~~~~ivvyC~~G~rS~~aa~~L~~~G~~~v~~l~GG~~ 118 (137)
T 1qxn_A 81 PEKPVVVFCKTAARAALAGKTLREYGFKTIYNSEGGMD 118 (137)
T ss_dssp TTSCEEEECCSSSCHHHHHHHHHHHTCSCEEEESSCHH
T ss_pred CCCeEEEEcCCCcHHHHHHHHHHHcCCcceEEEcCcHH
Confidence 3568999998766666777888899995 788999864
No 96
>2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay, zinc-finger, ATP-binding, metal-BIN UPF2, UPF1, helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A
Probab=41.23 E-value=50 Score=30.24 Aligned_cols=52 Identities=21% Similarity=0.256 Sum_probs=45.8
Q ss_pred ccccHHHHHHHHhHHHh-CCCeEEEEechhhHHHHHHHHHHhcCCeEEEeeCC
Q psy2047 176 ESGKLKKLDEILPDLKK-NGHRVLIFSQFIFVLDILGHYMDIRGWRHLRLDGA 227 (233)
Q Consensus 176 ~s~Kl~~l~~lL~~~~~-~~~KvlIFSq~~~~Ld~l~~~l~~~gi~~~rldG~ 227 (233)
.+||-..+..++..+.. .+.+++|.+......+-|...+...|++.+|+.+.
T Consensus 381 GTGKT~ti~~~i~~l~~~~~~~ilv~a~tn~A~~~l~~~l~~~g~~vvRlg~~ 433 (800)
T 2wjy_A 381 GTGKTVTSATIVYHLARQGNGPVLVCAPSNIAVDQLTEKIHQTGLKVVRLCAK 433 (800)
T ss_dssp TSCHHHHHHHHHHHHHTTCSSCEEEEESSHHHHHHHHHHHHTTTCCEEECCCG
T ss_pred CCCHHHHHHHHHHHHHHcCCCcEEEEcCcHHHHHHHHHHHHHhCcceEeeccc
Confidence 48999999999988876 57899999999999999999999999999998654
No 97
>3ilm_A ALR3790 protein; rhodanese-like, NSR437H, NESG, structural genomics, protein structure initiative, northeast structural genomics consortium; 2.26A {Nostoc SP} PDB: 2kl3_A
Probab=40.37 E-value=30 Score=23.85 Aligned_cols=37 Identities=8% Similarity=0.090 Sum_probs=28.6
Q ss_pred CCCeEEEEechhhHHHHHHHHHHhcCCe-EEEeeCCcc
Q psy2047 193 NGHRVLIFSQFIFVLDILGHYMDIRGWR-HLRLDGATQ 229 (233)
Q Consensus 193 ~~~KvlIFSq~~~~Ld~l~~~l~~~gi~-~~rldG~~~ 229 (233)
.+.++||+|..-..-......|...|+. ...|+|++.
T Consensus 55 ~~~~ivvyC~~g~rs~~aa~~L~~~G~~~v~~l~GG~~ 92 (141)
T 3ilm_A 55 KSRDIYVYGAGDEQTSQAVNLLRSAGFEHVSELKGGLA 92 (141)
T ss_dssp TTSEEEEECSSHHHHHHHHHHHHHTTCCSEEECTTHHH
T ss_pred CCCeEEEEECCChHHHHHHHHHHHcCCCCEEEecCHHH
Confidence 3568999998766666778888999996 677888753
No 98
>2obb_A Hypothetical protein; structural genomics, PSI-2, PR structure initiative, midwest center for structural genomic unknown function; 2.20A {Bacteroides thetaiotaomicron} SCOP: c.108.1.25
Probab=39.72 E-value=44 Score=23.30 Aligned_cols=44 Identities=23% Similarity=0.231 Sum_probs=31.2
Q ss_pred HHHHHHhHHHhCCCeEEEEechh-hHHHHHHHHHHhcCCeEEEee
Q psy2047 182 KLDEILPDLKKNGHRVLIFSQFI-FVLDILGHYMDIRGWRHLRLD 225 (233)
Q Consensus 182 ~l~~lL~~~~~~~~KvlIFSq~~-~~Ld~l~~~l~~~gi~~~rld 225 (233)
...+.|+.+.+.|.+++|.|.=. ..+..+...|...|+.+..+.
T Consensus 28 ~~~~al~~l~~~G~~iii~TgR~~~~~~~~~~~l~~~gi~~~~I~ 72 (142)
T 2obb_A 28 FAVETLKLLQQEKHRLILWSVREGELLDEAIEWCRARGLEFYAAN 72 (142)
T ss_dssp THHHHHHHHHHTTCEEEECCSCCHHHHHHHHHHHHTTTCCCSEES
T ss_pred HHHHHHHHHHHCCCEEEEEeCCCcccHHHHHHHHHHcCCCeEEEE
Confidence 35677888888999999998632 345556666778888764443
No 99
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=38.21 E-value=83 Score=26.52 Aligned_cols=56 Identities=27% Similarity=0.224 Sum_probs=38.0
Q ss_pred ccccHHHHHHHHhH-HHhC----CCeEEEEechhhHHHHHHHHHH----hcCCeEEEeeCCcccC
Q psy2047 176 ESGKLKKLDEILPD-LKKN----GHRVLIFSQFIFVLDILGHYMD----IRGWRHLRLDGATQVS 231 (233)
Q Consensus 176 ~s~Kl~~l~~lL~~-~~~~----~~KvlIFSq~~~~Ld~l~~~l~----~~gi~~~rldG~~~~~ 231 (233)
.|||-....-.+.. +... +.++||.+.......-....+. ..|+.+..++|+.+..
T Consensus 29 GsGKT~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~ 93 (555)
T 3tbk_A 29 GCGKTFVSLLICEHHLKKFPCGQKGKVVFFANQIPVYEQQATVFSRYFERLGYNIASISGATSDS 93 (555)
T ss_dssp TSCHHHHHHHHHHHHHHTCCSSCCCCEEEECSSHHHHHHHHHHHHHHHHTTTCCEEEECTTTGGG
T ss_pred CChHHHHHHHHHHHHHHhcccCCCCEEEEEeCCHHHHHHHHHHHHHHhccCCcEEEEEcCCCcch
Confidence 38898775554443 3332 6699999988765554444444 3499999999998654
No 100
>2wci_A Glutaredoxin-4; redox-active center, iron-sulfur cluster scaffolder, Fe2S2, homodimer, transport, glutathione, thioredoxin fold; HET: GSH; 1.90A {Escherichia coli} PDB: 1yka_A
Probab=38.00 E-value=60 Score=22.30 Aligned_cols=42 Identities=12% Similarity=0.018 Sum_probs=27.3
Q ss_pred HHHHHhHHHhCCCeEEEEec------hhhHHHHHHHHHHhcCCeEEEee
Q psy2047 183 LDEILPDLKKNGHRVLIFSQ------FIFVLDILGHYMDIRGWRHLRLD 225 (233)
Q Consensus 183 l~~lL~~~~~~~~KvlIFSq------~~~~Ld~l~~~l~~~gi~~~rld 225 (233)
+.+.+.++... .+|+||+. +=..=.-...+|...|++|..+|
T Consensus 24 ~~~~v~~~i~~-~~Vvvy~ks~~~~~~Cp~C~~ak~~L~~~gv~y~~vd 71 (135)
T 2wci_A 24 TIEKIQRQIAE-NPILLYMKGSPKLPSCGFSAQAVQALAACGERFAYVD 71 (135)
T ss_dssp HHHHHHHHHHH-CSEEEEESBCSSSBSSHHHHHHHHHHHTTCSCCEEEE
T ss_pred HHHHHHHHhcc-CCEEEEEEecCCCCCCccHHHHHHHHHHcCCceEEEE
Confidence 33444444333 48999977 55566667777788888877665
No 101
>2wul_A Glutaredoxin related protein 5; chromosome 14 open reading frame 87, oxidoreductase, thiored family, GLRX5, FLB4739; HET: GSH; 2.40A {Homo sapiens}
Probab=37.31 E-value=55 Score=22.01 Aligned_cols=31 Identities=10% Similarity=0.142 Sum_probs=20.1
Q ss_pred CeEEEEechh------hHHHHHHHHHHhcCC-eEEEee
Q psy2047 195 HRVLIFSQFI------FVLDILGHYMDIRGW-RHLRLD 225 (233)
Q Consensus 195 ~KvlIFSq~~------~~Ld~l~~~l~~~gi-~~~rld 225 (233)
++||||+-.+ .+=.-....|...|+ +|.-++
T Consensus 20 ~~VvvF~Kgt~~~P~C~fc~~ak~lL~~~gv~~~~~~~ 57 (118)
T 2wul_A 20 DKVVVFLKGTPEQPQCGFSNAVVQILRLHGVRDYAAYN 57 (118)
T ss_dssp SSEEEEESBCSSSBSSHHHHHHHHHHHHTTCCSCEEEE
T ss_pred CCEEEEEcCCCCCCCCHHHHHHHHHHHHhCCcCeEeec
Confidence 6999997643 344455566777777 466554
No 102
>4a4z_A Antiviral helicase SKI2; hydrolase, ATPase, mRNA degradation, exosome; HET: ANP; 2.40A {Saccharomyces cerevisiae} PDB: 4a4k_A
Probab=36.94 E-value=23 Score=33.39 Aligned_cols=39 Identities=5% Similarity=0.053 Sum_probs=28.0
Q ss_pred cHHHHHHHHhHHHhCCCeEEEEechhhHHHHHHHHHHhcCC
Q psy2047 179 KLKKLDEILPDLKKNGHRVLIFSQFIFVLDILGHYMDIRGW 219 (233)
Q Consensus 179 Kl~~l~~lL~~~~~~~~KvlIFSq~~~~Ld~l~~~l~~~gi 219 (233)
++..+++.|.. ....++|||+......+.+...|...|+
T Consensus 323 ~~~~li~~l~~--~~~~~~IVF~~sr~~~e~la~~L~~~~~ 361 (997)
T 4a4z_A 323 TWPEIVNYLRK--RELLPMVVFVFSKKRCEEYADWLEGINF 361 (997)
T ss_dssp HHHHHHHHHHH--TTCCSEEEECSCHHHHHHHHHTTTTCCC
T ss_pred HHHHHHHHHHh--CCCCCEEEEECCHHHHHHHHHHHhcCCC
Confidence 34444444433 2346999999999999999999877665
No 103
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=35.77 E-value=92 Score=25.32 Aligned_cols=55 Identities=7% Similarity=-0.040 Sum_probs=42.4
Q ss_pred ccccHHHHHHHHhHHHhCCCeEEEEechhhHHHHHHHHHHh---cCCeEEEeeCCccc
Q psy2047 176 ESGKLKKLDEILPDLKKNGHRVLIFSQFIFVLDILGHYMDI---RGWRHLRLDGATQV 230 (233)
Q Consensus 176 ~s~Kl~~l~~lL~~~~~~~~KvlIFSq~~~~Ld~l~~~l~~---~gi~~~rldG~~~~ 230 (233)
.|||-.+.+-.+......+.++||.+.......-+...+.. .|++...++|+++.
T Consensus 46 GsGKT~~~l~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~v~~~~g~~~~ 103 (414)
T 3oiy_A 46 GVGKTTFGMMTALWLARKGKKSALVFPTVTLVKQTLERLQKLADEKVKIFGFYSSMKK 103 (414)
T ss_dssp SSSHHHHHHHHHHHHHTTTCCEEEEESSHHHHHHHHHHHHHHCCSSCCEEECCTTSCH
T ss_pred CCCHHHHHHHHHHHHhcCCCEEEEEECCHHHHHHHHHHHHHHccCCceEEEEECCCCh
Confidence 38998755544444445677999999998888887777777 68899999999875
No 104
>1urh_A 3-mercaptopyruvate sulfurtransferase; rhodanese; 2.8A {Escherichia coli} SCOP: c.46.1.2 c.46.1.2
Probab=35.43 E-value=29 Score=26.89 Aligned_cols=49 Identities=8% Similarity=0.119 Sum_probs=33.5
Q ss_pred HHHHHHHhHH-HhCCCeEEEEechhhH-HHHHHHHHHhcCC-eEEEeeCCcc
Q psy2047 181 KKLDEILPDL-KKNGHRVLIFSQFIFV-LDILGHYMDIRGW-RHLRLDGATQ 229 (233)
Q Consensus 181 ~~l~~lL~~~-~~~~~KvlIFSq~~~~-Ld~l~~~l~~~gi-~~~rldG~~~ 229 (233)
..+.+.+..+ ...+.++||+|+.-.. -......|...|+ +...|+|++.
T Consensus 72 ~~~~~~~~~~gi~~~~~ivvyc~~g~~~a~~a~~~L~~~G~~~v~~l~GG~~ 123 (280)
T 1urh_A 72 ETFAVAMRELGVNQDKHLIVYDEGNLFSAPRAWWMLRTFGVEKVSILGGGLA 123 (280)
T ss_dssp HHHHHHHHHTTCCTTSEEEEECSSSCSSHHHHHHHHHHTTCSCEEEETTHHH
T ss_pred HHHHHHHHHcCCCCCCeEEEECCCCCccHHHHHHHHHHcCCCCEEEecCCHH
Confidence 3444455554 2345689999987544 5677788899999 4778898753
No 105
>1wik_A Thioredoxin-like protein 2; picot homology 2 domain, picot protein, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: c.47.1.1
Probab=35.32 E-value=47 Score=21.49 Aligned_cols=33 Identities=12% Similarity=0.038 Sum_probs=20.5
Q ss_pred CCeEEEEec------hhhHHHHHHHHHHhcCCeEEEeeC
Q psy2047 194 GHRVLIFSQ------FIFVLDILGHYMDIRGWRHLRLDG 226 (233)
Q Consensus 194 ~~KvlIFSq------~~~~Ld~l~~~l~~~gi~~~rldG 226 (233)
..+|+||+. |=..=.-....|+..|+.|..+|=
T Consensus 14 ~~~vvvy~~g~~~~~~Cp~C~~ak~~L~~~~i~~~~vdi 52 (109)
T 1wik_A 14 KASVMLFMKGNKQEAKCGFSKQILEILNSTGVEYETFDI 52 (109)
T ss_dssp TSSEEEEESSTTTCCCSSTHHHHHHHHHHTCSCEEEEES
T ss_pred cCCEEEEEecCCCCCCCchHHHHHHHHHHcCCCeEEEEC
Confidence 357888877 223444555666677777766663
No 106
>3anw_A GINS51, putative uncharacterized protein; SLD5 superfamily, DNA replication, replication; 2.65A {Thermococcus kodakarensis}
Probab=34.98 E-value=40 Score=24.79 Aligned_cols=48 Identities=15% Similarity=0.125 Sum_probs=36.4
Q ss_pred HHHHHHHhhhhhhhhcchhhhhhcCCCceEEEEEeeCCHHHHHHHHHHHHHHh
Q psy2047 25 QVDQAKRIISPFMLRRLKKDVLTELPKKTALVIKVPMIPSQAEKYRGLMEDFK 77 (233)
Q Consensus 25 ~~~~L~~~l~~~~lRRtk~~~~~~LP~k~e~~v~v~ls~~q~~lY~~~~~~~~ 77 (233)
.+..+...+..++-+|++..+..-... +.=.|++.|+.+|..+.+...
T Consensus 59 el~~~~~~~~~i~~~Rl~KIv~~a~~~-----~~~~Lt~EEk~l~~~l~~~i~ 106 (188)
T 3anw_A 59 QLKIAESLMKEIIKLRLHKIVDLAVEG-----KIAEMTAEEKRLFNVIRAFIE 106 (188)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHT-----EECCCCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhh-----hhhhCCHHHHHHHHHHHHHHH
Confidence 467788889999999999876322111 457899999999999987554
No 107
>2xzm_U Ribosomal protein L7AE containing protein; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_U
Probab=34.98 E-value=1.1e+02 Score=20.85 Aligned_cols=41 Identities=2% Similarity=-0.011 Sum_probs=30.4
Q ss_pred HhHHHhCCCeEEEEechh---hHHHHHHHHHHhcCCeEEEeeCC
Q psy2047 187 LPDLKKNGHRVLIFSQFI---FVLDILGHYMDIRGWRHLRLDGA 227 (233)
Q Consensus 187 L~~~~~~~~KvlIFSq~~---~~Ld~l~~~l~~~gi~~~rldG~ 227 (233)
++.+....-+.+|.+.-. .+...|..++...+++|+.+.+.
T Consensus 33 ~Kai~~gka~LViiA~D~~p~~~~~~i~~lc~~~~Ip~~~v~sk 76 (126)
T 2xzm_U 33 LRTIEAKQALFVCVAEDCDQGNYVKLVKALCAKNEIKYVSVPKR 76 (126)
T ss_dssp HHHHHHTCCSEEEEESSCCSTTHHHHHHHHHHHTTCCEEEESCS
T ss_pred HHHHHcCCceEEEEeCCCChHHHHHHHHHHHHHhCCCEEEECCH
Confidence 333344455899999876 45678999999999999987643
No 108
>1e0c_A Rhodanese, sulfurtransferase; sulfur metabolism, thiosulfate:cyanide sulfurtransferase; 1.8A {Azotobacter vinelandii} SCOP: c.46.1.2 c.46.1.2 PDB: 1h4k_X 1h4m_X
Probab=34.74 E-value=41 Score=25.81 Aligned_cols=49 Identities=12% Similarity=0.174 Sum_probs=32.8
Q ss_pred HHHHHHHhHH-HhCCCeEEEEechhh-HHHHHHHHHHhcCCe-EEEeeCCcc
Q psy2047 181 KKLDEILPDL-KKNGHRVLIFSQFIF-VLDILGHYMDIRGWR-HLRLDGATQ 229 (233)
Q Consensus 181 ~~l~~lL~~~-~~~~~KvlIFSq~~~-~Ld~l~~~l~~~gi~-~~rldG~~~ 229 (233)
..+.+.+.++ ...+..+||+|..-. .-......|...|+. ...|+|++.
T Consensus 67 ~~~~~~~~~~gi~~~~~vvvyc~~g~~~s~~a~~~L~~~G~~~v~~L~GG~~ 118 (271)
T 1e0c_A 67 EQLESLFGELGHRPEAVYVVYDDEGGGWAGRFIWLLDVIGQQRYHYLNGGLT 118 (271)
T ss_dssp HHHHHHHHHHTCCTTCEEEEECSSSSHHHHHHHHHHHHTTCCCEEEETTHHH
T ss_pred HHHHHHHHHcCCCCCCeEEEEcCCCCccHHHHHHHHHHcCCCCeEEecCCHH
Confidence 3444455554 334568888887654 455667788999995 668998754
No 109
>2j6p_A SB(V)-AS(V) reductase; arsenate reductase, antimonate reductase, CDC25 phosphatase, rhodanese, C-MYC epitope, oxidoreductase; HET: EPE; 2.15A {Leishmania major}
Probab=34.68 E-value=62 Score=22.44 Aligned_cols=37 Identities=11% Similarity=0.073 Sum_probs=21.7
Q ss_pred CCCeEEEE-ec-h--hh--HHHHHHHHHHhcCC---eEEEeeCCcc
Q psy2047 193 NGHRVLIF-SQ-F--IF--VLDILGHYMDIRGW---RHLRLDGATQ 229 (233)
Q Consensus 193 ~~~KvlIF-Sq-~--~~--~Ld~l~~~l~~~gi---~~~rldG~~~ 229 (233)
.+.++||| |. . .+ ....+...|...|+ +...|+|++.
T Consensus 66 ~~~~~vV~yC~~sg~rs~~aa~~~~~~L~~~G~~~~~v~~L~GG~~ 111 (152)
T 2j6p_A 66 EKKELAVFHCAQSLVRAPKGANRFALAQKKLGYVLPAVYVLRGGWE 111 (152)
T ss_dssp TTCCEEEEECSSSSSHHHHHHHHHHHHHHHHTCCCSEEEEETTHHH
T ss_pred cCCCEEEEEcCCCCCccHHHHHHHHHHHHHcCCCCCCEEEEcCcHH
Confidence 44555555 72 2 22 22245567778897 5677899764
No 110
>1vee_A Proline-rich protein family; hypothetical protein, structural genomics, rhodanese domain, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} PDB: 2dcq_A
Probab=34.45 E-value=46 Score=22.53 Aligned_cols=37 Identities=8% Similarity=0.313 Sum_probs=28.1
Q ss_pred CCCeEEEEechhhHHHHHHHHHHhcCCe-EEEeeCCcc
Q psy2047 193 NGHRVLIFSQFIFVLDILGHYMDIRGWR-HLRLDGATQ 229 (233)
Q Consensus 193 ~~~KvlIFSq~~~~Ld~l~~~l~~~gi~-~~rldG~~~ 229 (233)
.+..+||+|+.=..=......|...|+. ...+.|++.
T Consensus 73 ~~~~ivv~C~sG~RS~~aa~~L~~~G~~~v~~l~GG~~ 110 (134)
T 1vee_A 73 ENTTLYILDKFDGNSELVAELVALNGFKSAYAIKDGAE 110 (134)
T ss_dssp GGCEEEEECSSSTTHHHHHHHHHHHTCSEEEECTTTTT
T ss_pred CCCEEEEEeCCCCcHHHHHHHHHHcCCcceEEecCCcc
Confidence 3568999998765555667788889995 778999873
No 111
>1m45_B IQ2, IQ2 motif from MYO2P, A class V myosin; protein-peptide complex, myosin light chain, cell cycle protein; 1.65A {Saccharomyces cerevisiae}
Probab=33.74 E-value=38 Score=15.52 Aligned_cols=18 Identities=17% Similarity=0.372 Sum_probs=14.3
Q ss_pred HHHHHHHHhhhhhhhhcc
Q psy2047 24 EQVDQAKRIISPFMLRRL 41 (233)
Q Consensus 24 ~~~~~L~~~l~~~~lRRt 41 (233)
+++.-|+.-++.|++|..
T Consensus 4 qaikylqnnikgfiirqr 21 (26)
T 1m45_B 4 QAIKYLQNNIKGFIIRQR 21 (26)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhccceEEEeee
Confidence 466778999999999853
No 112
>3d1p_A Putative thiosulfate sulfurtransferase YOR285W; atomic structure, atomic resolution structure, PSI, MCSG; HET: MSE; 0.98A {Saccharomyces cerevisiae}
Probab=33.37 E-value=35 Score=23.20 Aligned_cols=36 Identities=6% Similarity=0.015 Sum_probs=28.0
Q ss_pred CCeEEEEechhhHHHHHHHHHHhcCCe-EEEeeCCcc
Q psy2047 194 GHRVLIFSQFIFVLDILGHYMDIRGWR-HLRLDGATQ 229 (233)
Q Consensus 194 ~~KvlIFSq~~~~Ld~l~~~l~~~gi~-~~rldG~~~ 229 (233)
+.++||+|..-..-......|...|+. ...++|++.
T Consensus 91 ~~~ivvyC~~G~rs~~aa~~L~~~G~~~v~~l~GG~~ 127 (139)
T 3d1p_A 91 AKELIFYCASGKRGGEAQKVASSHGYSNTSLYPGSMN 127 (139)
T ss_dssp TSEEEEECSSSHHHHHHHHHHHTTTCCSEEECTTHHH
T ss_pred CCeEEEECCCCchHHHHHHHHHHcCCCCeEEeCCcHH
Confidence 468899998766666777888899996 778899764
No 113
>3hzu_A Thiosulfate sulfurtransferase SSEA; niaid, ssgcid, infectious disease, transferase structural genomics; 2.10A {Mycobacterium tuberculosis} PDB: 3p3a_A
Probab=33.02 E-value=52 Score=26.19 Aligned_cols=48 Identities=13% Similarity=0.117 Sum_probs=33.4
Q ss_pred HHHHHHhHH-HhCCCeEEEEechhh-HHHHHHHHHHhcCCe-EEEeeCCcc
Q psy2047 182 KLDEILPDL-KKNGHRVLIFSQFIF-VLDILGHYMDIRGWR-HLRLDGATQ 229 (233)
Q Consensus 182 ~l~~lL~~~-~~~~~KvlIFSq~~~-~Ld~l~~~l~~~gi~-~~rldG~~~ 229 (233)
.+.+.+..+ ...+..+||+|..-. .-......|+..|+. ...|+|++.
T Consensus 98 ~~~~~l~~lgi~~~~~vVvyc~~g~~~a~~a~~~L~~~G~~~V~~L~GG~~ 148 (318)
T 3hzu_A 98 QFAELMDRKGIARDDTVVIYGDKSNWWAAYALWVFTLFGHADVRLLNGGRD 148 (318)
T ss_dssp HHHHHHHHTTCCTTCEEEEECSGGGHHHHHHHHHHHHTTCSCEEEETTHHH
T ss_pred HHHHHHHHcCCCCCCeEEEECCCCCccHHHHHHHHHHcCCCceEEccCCHH
Confidence 444555554 334678999998655 455677888899995 788998753
No 114
>1o2d_A Alcohol dehydrogenase, iron-containing; TM0920, structural genomics, JCSG, PSI, protein structure initiative; HET: MSE NAP TRS; 1.30A {Thermotoga maritima} SCOP: e.22.1.2 PDB: 1vhd_A*
Probab=31.76 E-value=93 Score=25.33 Aligned_cols=59 Identities=24% Similarity=0.268 Sum_probs=37.9
Q ss_pred ccCCchhhhccccHHHHHHHHhHHHhCCCeEEEEech---hh--HHHHHHHHHHhcCCeEEEeeCCc
Q psy2047 167 YKVPDDLVVESGKLKKLDEILPDLKKNGHRVLIFSQF---IF--VLDILGHYMDIRGWRHLRLDGAT 228 (233)
Q Consensus 167 ~~~~~~~~~~s~Kl~~l~~lL~~~~~~~~KvlIFSq~---~~--~Ld~l~~~l~~~gi~~~rldG~~ 228 (233)
+..+...+...+-+..+-+.++.+ |.|++|.+.- .. .++-+...|+..|+.+..++|-.
T Consensus 16 ~~~p~~i~~G~g~~~~l~~~l~~~---g~~~liVtd~~~~~~~g~~~~v~~~L~~~g~~~~~~~~~~ 79 (371)
T 1o2d_A 16 FYMPTDVFFGEKILEKRGNIIDLL---GKRALVVTGKSSSKKNGSLDDLKKLLDETEISYEIFDEVE 79 (371)
T ss_dssp CCCCCEEEESTTHHHHHGGGGGGT---CSEEEEEEESSGGGTSSHHHHHHHHHHHTTCEEEEEEEEC
T ss_pred ecCCceEEECcCHHHHHHHHHHHc---CCEEEEEECchHHhhccHHHHHHHHHHHcCCeEEEeCCcc
Confidence 333444444445555555555443 5788888743 22 67888888999999988888654
No 115
>1uar_A Rhodanese; sulfurtransferase, riken structural genomics/PROT initiative, RSGI, structural genomics, transferase; 1.70A {Thermus thermophilus} SCOP: c.46.1.2 c.46.1.2
Probab=31.50 E-value=55 Score=25.31 Aligned_cols=47 Identities=13% Similarity=0.213 Sum_probs=31.7
Q ss_pred HHHHHhHH-HhCCCeEEEEechhh-HHHHHHHHHHhcCCe-EEEeeCCcc
Q psy2047 183 LDEILPDL-KKNGHRVLIFSQFIF-VLDILGHYMDIRGWR-HLRLDGATQ 229 (233)
Q Consensus 183 l~~lL~~~-~~~~~KvlIFSq~~~-~Ld~l~~~l~~~gi~-~~rldG~~~ 229 (233)
+.+.+..+ ...+.++||+|..-. .-......|...|+. ...|+|++.
T Consensus 67 ~~~~~~~~gi~~~~~ivvyc~~g~~~s~~a~~~L~~~G~~~v~~l~GG~~ 116 (285)
T 1uar_A 67 FAKLMERLGISNDTTVVLYGDKNNWWAAYAFWFFKYNGHKDVRLMNGGRQ 116 (285)
T ss_dssp HHHHHHHTTCCTTCEEEEECHHHHHHHHHHHHHHHHTTCSCEEEETTHHH
T ss_pred HHHHHHHcCCCCCCeEEEECCCCCccHHHHHHHHHHcCCCCeEEecCCHH
Confidence 33444444 234568999997754 345677788889995 778898753
No 116
>1wn2_A Peptidyl-tRNA hydrolase; riken structural genomics/proteomics initiative, structural genomics; 1.20A {Pyrococcus horikoshii} PDB: 2d3k_A
Probab=31.47 E-value=1.2e+02 Score=20.41 Aligned_cols=40 Identities=15% Similarity=0.066 Sum_probs=31.7
Q ss_pred HHHhHHHhCCC-eEEEEechhhHHHHHHHHHHhcCCeEEEe
Q psy2047 185 EILPDLKKNGH-RVLIFSQFIFVLDILGHYMDIRGWRHLRL 224 (233)
Q Consensus 185 ~lL~~~~~~~~-KvlIFSq~~~~Ld~l~~~l~~~gi~~~rl 224 (233)
+.+..|...|. |+++-......|.-|...++..|+++..+
T Consensus 45 ~~~~~W~~~g~~Kvvlk~~~e~el~~l~~~a~~~gl~~~~i 85 (121)
T 1wn2_A 45 EWFEAWFREGQKKVVVKVESEEELFKLKAEAEKLGLPNALI 85 (121)
T ss_dssp HHHHHHHHTTCCEEEEEESSHHHHHHHHHHHHHTTCCEEEE
T ss_pred HHHHHHHHCCCcEEEEecCCHHHHHHHHHHHHHCCCCEEEE
Confidence 56677776765 88888888888888888889999997666
No 117
>1vlj_A NADH-dependent butanol dehydrogenase; TM0820, structural G JCSG, protein structure initiative, PSI, joint center for S genomics; HET: NAP; 1.78A {Thermotoga maritima} SCOP: e.22.1.2
Probab=31.16 E-value=99 Score=25.55 Aligned_cols=56 Identities=21% Similarity=0.363 Sum_probs=36.8
Q ss_pred chhhhccccHHHHHHHHhHHHhCC-CeEEEEec--hh-h--HHHHHHHHHHhcCCeEEEeeCCcc
Q psy2047 171 DDLVVESGKLKKLDEILPDLKKNG-HRVLIFSQ--FI-F--VLDILGHYMDIRGWRHLRLDGATQ 229 (233)
Q Consensus 171 ~~~~~~s~Kl~~l~~lL~~~~~~~-~KvlIFSq--~~-~--~Ld~l~~~l~~~gi~~~rldG~~~ 229 (233)
...+...+-+..+-+.++.+ | .|++|.+. .. . .++-+...|+..|+.+..++|-.+
T Consensus 22 ~~i~~G~g~l~~l~~~l~~~---g~~r~liVtd~~~~~~~g~~~~v~~~L~~~g~~~~~f~~v~~ 83 (407)
T 1vlj_A 22 TKIVFGRGTIPKIGEEIKNA---GIRKVLFLYGGGSIKKNGVYDQVVDSLKKHGIEWVEVSGVKP 83 (407)
T ss_dssp CEEEESTTCGGGHHHHHHHT---TCCEEEEEECSSHHHHSSHHHHHHHHHHHTTCEEEEECCCCS
T ss_pred CeEEECcCHHHHHHHHHHHc---CCCeEEEEECchHHhhccHHHHHHHHHHHcCCeEEEecCccC
Confidence 33333344455555555543 4 68888875 22 2 588888999999999999988544
No 118
>3jyw_G 60S ribosomal protein L8(A); eukaryotic ribosome, RACK1 protein, flexible fitting; 8.90A {Thermomyces lanuginosus} PDB: 1s1i_G
Probab=31.14 E-value=52 Score=22.03 Aligned_cols=37 Identities=8% Similarity=0.136 Sum_probs=28.5
Q ss_pred CCCeEEEEechhhHHH---HHHHHHHhcCCeEEEeeCCcc
Q psy2047 193 NGHRVLIFSQFIFVLD---ILGHYMDIRGWRHLRLDGATQ 229 (233)
Q Consensus 193 ~~~KvlIFSq~~~~Ld---~l~~~l~~~gi~~~rldG~~~ 229 (233)
..-+.||++.-.+-.+ .|...+...|++|+.+.|...
T Consensus 40 gka~LVvIA~D~~p~~i~~~l~~lC~~~~VP~~~v~sk~~ 79 (113)
T 3jyw_G 40 KKAKLVLIANDVDPIELVVFLPALCKKMGVPYAIVKGKAR 79 (113)
T ss_dssp TCCSEEEECSCCSSHHHHTTHHHHHHHTTCCCEECSCSTT
T ss_pred CCceEEEEeCCCCHHHHHHHHHHHHHHcCCCEEEECCHHH
Confidence 3458999999886544 477888999999998887543
No 119
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=30.90 E-value=1e+02 Score=25.96 Aligned_cols=56 Identities=14% Similarity=0.141 Sum_probs=35.6
Q ss_pred ccccHHHHHHHHh-HHHhC----CCeEEEEechhhHHHHHHHHHHh----cCCeEEEeeCCcccC
Q psy2047 176 ESGKLKKLDEILP-DLKKN----GHRVLIFSQFIFVLDILGHYMDI----RGWRHLRLDGATQVS 231 (233)
Q Consensus 176 ~s~Kl~~l~~lL~-~~~~~----~~KvlIFSq~~~~Ld~l~~~l~~----~gi~~~rldG~~~~~ 231 (233)
.|||-....-.+. .+... +.++||.+.......-....+.. .|+.+..++|+++..
T Consensus 32 GsGKT~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~ 96 (556)
T 4a2p_A 32 GSGKTFVSILICEHHFQNMPAGRKAKVVFLATKVPVYEQQKNVFKHHFERQGYSVQGISGENFSN 96 (556)
T ss_dssp TSCHHHHHHHHHHHHHHTCCSSCCCCEEEECSSHHHHHHHHHHHHHHHGGGTCCEEECCCC----
T ss_pred CChHHHHHHHHHHHHHHhCcccCCCeEEEEeCCHHHHHHHHHHHHHHhcccCceEEEEeCCCCcc
Confidence 3888776555443 33332 56899999887666555555544 499999999998654
No 120
>3v7e_A Ribosome-associated protein L7AE-like; RNA-protein complex, K-turn, L7AE-like, A member L7AE/L30E superfamily; HET: SAM; 2.80A {Bacillus subtilis}
Probab=30.74 E-value=96 Score=19.10 Aligned_cols=34 Identities=3% Similarity=-0.025 Sum_probs=26.7
Q ss_pred CCeEEEEechhh--HHHHHHHHHHhcCCeEEEeeCC
Q psy2047 194 GHRVLIFSQFIF--VLDILGHYMDIRGWRHLRLDGA 227 (233)
Q Consensus 194 ~~KvlIFSq~~~--~Ld~l~~~l~~~gi~~~rldG~ 227 (233)
.-|.+|++.-.+ +...|..++...|++|+.+.+.
T Consensus 27 kaklViiA~D~~~~~~~~i~~lc~~~~Ip~~~v~sk 62 (82)
T 3v7e_A 27 SVKEVVVAKDADPILTSSVVSLAEDQGISVSMVESM 62 (82)
T ss_dssp CEEEEEEETTSCHHHHHHHHHHHHHHTCCEEEESCH
T ss_pred CeeEEEEeCCCCHHHHHHHHHHHHHcCCCEEEECCH
Confidence 349999988774 5666777888999999988753
No 121
>2j48_A Two-component sensor kinase; pseudo-receiver, circadian clock, transferase, response regulator, histidine protein kinase; NMR {Synechococcus elongatus}
Probab=29.69 E-value=90 Score=19.27 Aligned_cols=33 Identities=15% Similarity=0.021 Sum_probs=20.8
Q ss_pred CCCeEEEEechhhHHHHHHHHHHhcCCeEEEeeCCcc
Q psy2047 193 NGHRVLIFSQFIFVLDILGHYMDIRGWRHLRLDGATQ 229 (233)
Q Consensus 193 ~~~KvlIFSq~~~~Ld~l~~~l~~~gi~~~rldG~~~ 229 (233)
.|..+..++.....++.+.. ..+..+.+|-.++
T Consensus 24 ~g~~v~~~~~~~~~~~~l~~----~~~dlii~d~~~~ 56 (119)
T 2j48_A 24 AGFKVIWLVDGSTALDQLDL----LQPIVILMAWPPP 56 (119)
T ss_dssp TTCEEEEESCHHHHHHHHHH----HCCSEEEEECSTT
T ss_pred CCcEEEEecCHHHHHHHHHh----cCCCEEEEecCCC
Confidence 46677777766666665543 4567777776554
No 122
>3sxu_A DNA polymerase III subunit CHI; DNA replication, CHI binds to SSB and PSI, transferase; HET: DNA; 1.85A {Escherichia coli} SCOP: c.128.1.1 PDB: 1em8_A*
Probab=29.37 E-value=77 Score=22.28 Aligned_cols=40 Identities=23% Similarity=0.061 Sum_probs=35.6
Q ss_pred cccHHHHHHHHhHHHhCCCeEEEEechhhHHHHHHHHHHh
Q psy2047 177 SGKLKKLDEILPDLKKNGHRVLIFSQFIFVLDILGHYMDI 216 (233)
Q Consensus 177 s~Kl~~l~~lL~~~~~~~~KvlIFSq~~~~Ld~l~~~l~~ 216 (233)
..+....-+++++....|.||+|.+.-...++.|-..|..
T Consensus 22 ~~~~~~aCrL~~ka~~~G~rv~V~~~d~~~a~~LD~~LW~ 61 (150)
T 3sxu_A 22 SAVEQLVCEIAAERWRSGKRVLIACEDEKQAYRLDEALWA 61 (150)
T ss_dssp CHHHHHHHHHHHHHHHTTCCEEEECSSHHHHHHHHHHTTT
T ss_pred hHHHHHHHHHHHHHHHcCCeEEEECCCHHHHHHHHHHHhC
Confidence 4577778889999999999999999999999999999965
No 123
>3iz5_H 60S ribosomal protein L7A (L7AE); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_H
Probab=29.00 E-value=71 Score=24.74 Aligned_cols=42 Identities=5% Similarity=0.074 Sum_probs=30.6
Q ss_pred HhHHHhCCC-eEEEEechhhHHHHH---HHHHHhcCCeEEEeeCCc
Q psy2047 187 LPDLKKNGH-RVLIFSQFIFVLDIL---GHYMDIRGWRHLRLDGAT 228 (233)
Q Consensus 187 L~~~~~~~~-KvlIFSq~~~~Ld~l---~~~l~~~gi~~~rldG~~ 228 (233)
+..+.+++. +.+|+++-++-++++ -..|.+.|++|+.+.|..
T Consensus 135 VTklVE~kKAqLVVIA~DVdPiElV~fLPaLC~k~gVPY~iVk~Ka 180 (258)
T 3iz5_H 135 VTYLIEQSKAQLVVIAHDVDPIELVVWLPALCRKMEVPYCIVKGKA 180 (258)
T ss_dssp HHHHHHTTCEEEEEEESCCSSTHHHHHHHHHHTTTTCCEEEESCHH
T ss_pred HHHHHHcCcceEEEEeCCCChHHHHhHHHHHHHhcCCCeEEECCHH
Confidence 333344454 899999988766554 667899999999998753
No 124
>3pct_A Class C acid phosphatase; hydrolase, outer membrane; 1.85A {Pasteurella multocida}
Probab=28.42 E-value=1.1e+02 Score=23.70 Aligned_cols=41 Identities=15% Similarity=-0.042 Sum_probs=32.3
Q ss_pred HHHHHHHhHHHhCCCeEEEEechhh--HHHHHHHHHHhcCCeE
Q psy2047 181 KKLDEILPDLKKNGHRVLIFSQFIF--VLDILGHYMDIRGWRH 221 (233)
Q Consensus 181 ~~l~~lL~~~~~~~~KvlIFSq~~~--~Ld~l~~~l~~~gi~~ 221 (233)
.-+.++|+.+.+.|.++.|.|.-.. .-+.....|+..||++
T Consensus 104 pg~~ell~~L~~~G~~i~ivTgR~~~~~r~~T~~~L~~lGi~~ 146 (260)
T 3pct_A 104 PGAVEFSNYVNANGGTMFFVSNRRDDVEKAGTVDDMKRLGFTG 146 (260)
T ss_dssp TTHHHHHHHHHHTTCEEEEEEEEETTTSHHHHHHHHHHHTCCC
T ss_pred ccHHHHHHHHHHCCCeEEEEeCCCccccHHHHHHHHHHcCcCc
Confidence 3456778888888999999886554 6778888888899985
No 125
>1uar_A Rhodanese; sulfurtransferase, riken structural genomics/PROT initiative, RSGI, structural genomics, transferase; 1.70A {Thermus thermophilus} SCOP: c.46.1.2 c.46.1.2
Probab=28.30 E-value=70 Score=24.68 Aligned_cols=37 Identities=8% Similarity=0.177 Sum_probs=27.6
Q ss_pred CCCeEEEEechhhHHHHHHHHHH-hcCC-eEEEeeCCcc
Q psy2047 193 NGHRVLIFSQFIFVLDILGHYMD-IRGW-RHLRLDGATQ 229 (233)
Q Consensus 193 ~~~KvlIFSq~~~~Ld~l~~~l~-~~gi-~~~rldG~~~ 229 (233)
.+..+||+|+.-..=......|. ..|+ +...++|++.
T Consensus 232 ~~~~ivvyC~~G~rs~~a~~~L~~~~G~~~v~~l~GG~~ 270 (285)
T 1uar_A 232 KDKDIVVYCRIAERSSHSWFVLKYLLGYPHVKNYDGSWT 270 (285)
T ss_dssp TTSEEEEECSSHHHHHHHHHHHHTTSCCSCEEEESSHHH
T ss_pred CCCCEEEECCchHHHHHHHHHHHHHcCCCCcceeCchHH
Confidence 35688999887655556667788 8899 5788899864
No 126
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=28.21 E-value=1.4e+02 Score=22.26 Aligned_cols=50 Identities=18% Similarity=0.173 Sum_probs=38.9
Q ss_pred cccHHHHHHHHhHHHhCCCeEEEEechhhHHHHHHHHHHhcCCe-EEEeeCCcc
Q psy2047 177 SGKLKKLDEILPDLKKNGHRVLIFSQFIFVLDILGHYMDIRGWR-HLRLDGATQ 229 (233)
Q Consensus 177 s~Kl~~l~~lL~~~~~~~~KvlIFSq~~~~Ld~l~~~l~~~gi~-~~rldG~~~ 229 (233)
+||-.+...++... +.++||++......+-+...+.+.|+. +..++|+..
T Consensus 119 ~GKT~~a~~~~~~~---~~~~liv~P~~~L~~q~~~~~~~~~~~~v~~~~g~~~ 169 (237)
T 2fz4_A 119 SGKTHVAMAAINEL---STPTLIVVPTLALAEQWKERLGIFGEEYVGEFSGRIK 169 (237)
T ss_dssp TTHHHHHHHHHHHS---CSCEEEEESSHHHHHHHHHHHGGGCGGGEEEESSSCB
T ss_pred CCHHHHHHHHHHHc---CCCEEEEeCCHHHHHHHHHHHHhCCCCeEEEEeCCCC
Confidence 88988877766554 678999998888877777777777888 888887654
No 127
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos}
Probab=28.19 E-value=1.3e+02 Score=27.33 Aligned_cols=57 Identities=16% Similarity=0.127 Sum_probs=37.0
Q ss_pred hccccHHHHHHHHhHHHhC-----CCeEEEEechhhHHHHHHHHHHh----cCCeEEEeeCCcccC
Q psy2047 175 VESGKLKKLDEILPDLKKN-----GHRVLIFSQFIFVLDILGHYMDI----RGWRHLRLDGATQVS 231 (233)
Q Consensus 175 ~~s~Kl~~l~~lL~~~~~~-----~~KvlIFSq~~~~Ld~l~~~l~~----~gi~~~rldG~~~~~ 231 (233)
..|||-.+..-.+...... +.++||.+.......-....+.+ .|+++..++|+.+..
T Consensus 272 TGsGKTl~~~~~i~~~l~~~~~~~~~~~Lvl~Pt~~L~~Q~~~~~~~~~~~~~~~v~~~~g~~~~~ 337 (797)
T 4a2q_A 272 TGSGKTFVSILICEHHFQNMPAGRKAKVVFLATKVPVYEQQKNVFKHHFERQGYSVQGISGENFSN 337 (797)
T ss_dssp TTSCHHHHHHHHHHHHHHTCCSSCCCCEEEECSSHHHHHHHHHHHHHHHGGGTCCEEEECCC----
T ss_pred CCChHHHHHHHHHHHHHHhccccCCCeEEEEeCCHHHHHHHHHHHHHhcccCCceEEEEeCCcchh
Confidence 3488987765555444333 66999999988666655554444 499999999998654
No 128
>2guk_A Hypothetical protein PG1857; alpha-beta, alpha-helical bundle, structural genomics, PSI, structure initiative; 1.91A {Porphyromonas gingivalis} SCOP: d.360.1.1
Probab=28.11 E-value=1.4e+02 Score=20.12 Aligned_cols=47 Identities=6% Similarity=-0.012 Sum_probs=39.1
Q ss_pred ccHHHHHHHHhHHHhCCCeEEEEechhhHHHHHHHHHHhcCCeEEEe
Q psy2047 178 GKLKKLDEILPDLKKNGHRVLIFSQFIFVLDILGHYMDIRGWRHLRL 224 (233)
Q Consensus 178 ~Kl~~l~~lL~~~~~~~~KvlIFSq~~~~Ld~l~~~l~~~gi~~~rl 224 (233)
+-++++...|=+..+.=...+.++-.......+...|+..||.|..-
T Consensus 11 ~~mkVf~hhIYEy~KGvR~LvL~T~~~~~~~~~~~rL~~~~I~Y~iq 57 (120)
T 2guk_A 11 SDLRVFMHHIYEFEKGVRSMVLATLANDDIPYAEERLRSRQIPYFAQ 57 (120)
T ss_dssp HHHHHHHHHHHHHHHTSCSEEEEEEEGGGHHHHHHHHHHTTCCEEEE
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHhcCHhhHHHHHHHHHhCCCCEEEE
Confidence 34778888887776655688999999999999999999999998753
No 129
>2lnd_A De novo designed protein, PFK fold; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Artificial gene}
Probab=27.28 E-value=1.2e+02 Score=18.91 Aligned_cols=56 Identities=13% Similarity=0.195 Sum_probs=40.1
Q ss_pred hhccccHHHHHHHHhHHHhCCCeEEEEechhhH--HHHHHHHHHhcCCeEEEeeCCcc
Q psy2047 174 VVESGKLKKLDEILPDLKKNGHRVLIFSQFIFV--LDILGHYMDIRGWRHLRLDGATQ 229 (233)
Q Consensus 174 ~~~s~Kl~~l~~lL~~~~~~~~KvlIFSq~~~~--Ld~l~~~l~~~gi~~~rldG~~~ 229 (233)
+...+.-+-+.++++.+..+|.-.+||..=.+- .+-.+..-++.|..|-.+....|
T Consensus 31 irtatssqdirdiiksmkdngkplvvfvngasqndvnefqneakkegvsydvlkstdp 88 (112)
T 2lnd_A 31 IRTATSSQDIRDIIKSMKDNGKPLVVFVNGASQNDVNEFQNEAKKEGVSYDVLKSTDP 88 (112)
T ss_dssp EEEECSHHHHHHHHHHHTTCCSCEEEEECSCCHHHHHHHHHHHHHHTCEEEEEECCCH
T ss_pred eeeccchhhHHHHHHHHHhcCCeEEEEecCcccccHHHHHHHHHhcCcchhhhccCCH
Confidence 344445566788999998999999999765543 34455666788999988876544
No 130
>3aay_A Putative thiosulfate sulfurtransferase; sulfurtranserase, structural genomics, PSI, structure initiative; 1.90A {Mycobacterium tuberculosis} PDB: 3aax_A 3hwi_A
Probab=27.24 E-value=81 Score=24.16 Aligned_cols=48 Identities=17% Similarity=0.281 Sum_probs=31.5
Q ss_pred HHHHHHhHH-HhCCCeEEEEechhh-HHHHHHHHHHhcCC-eEEEeeCCcc
Q psy2047 182 KLDEILPDL-KKNGHRVLIFSQFIF-VLDILGHYMDIRGW-RHLRLDGATQ 229 (233)
Q Consensus 182 ~l~~lL~~~-~~~~~KvlIFSq~~~-~Ld~l~~~l~~~gi-~~~rldG~~~ 229 (233)
.+.+.+..+ ...+..+||+|..-. .-......|...|+ +...|+|++.
T Consensus 64 ~~~~~~~~~gi~~~~~vvvyc~~g~~~s~~a~~~L~~~G~~~v~~l~GG~~ 114 (277)
T 3aay_A 64 QFSKLLSERGIANEDTVILYGGNNNWFAAYAYWYFKLYGHEKVKLLDGGRK 114 (277)
T ss_dssp HHHHHHHHHTCCTTSEEEEECSGGGHHHHHHHHHHHHTTCCSEEEETTHHH
T ss_pred HHHHHHHHcCCCCCCeEEEECCCCCchHHHHHHHHHHcCCCcEEEecCCHH
Confidence 344445543 234568999998743 34566778888999 4778898753
No 131
>1t1v_A SH3BGRL3, SH3 domain-binding glutamic acid-rich protein-LIK; glutaredoxin, thioredoxin fold, protein 3D-structure, X-RAY crystallography; 1.60A {Mus musculus} SCOP: c.47.1.14 PDB: 1j0f_A 1sj6_A
Probab=26.83 E-value=39 Score=21.12 Aligned_cols=8 Identities=0% Similarity=-0.263 Sum_probs=3.5
Q ss_pred CeEEEeeC
Q psy2047 219 WRHLRLDG 226 (233)
Q Consensus 219 i~~~rldG 226 (233)
++.+.++|
T Consensus 61 vP~ifi~g 68 (93)
T 1t1v_A 61 PPQIVNGN 68 (93)
T ss_dssp SCEEEETT
T ss_pred CCEEEECC
Confidence 34444444
No 132
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=26.66 E-value=55 Score=24.65 Aligned_cols=30 Identities=20% Similarity=0.181 Sum_probs=25.1
Q ss_pred ccccHHHHHHHHhHHHhCCCeEEEEechhh
Q psy2047 176 ESGKLKKLDEILPDLKKNGHRVLIFSQFIF 205 (233)
Q Consensus 176 ~s~Kl~~l~~lL~~~~~~~~KvlIFSq~~~ 205 (233)
.|||-..++..+......|.|++||.....
T Consensus 38 gsGKTT~lL~~a~r~~~~g~kVli~k~~~d 67 (214)
T 2j9r_A 38 FSGKSEELIRRVRRTQFAKQHAIVFKPCID 67 (214)
T ss_dssp TSCHHHHHHHHHHHHHHTTCCEEEEECC--
T ss_pred CCcHHHHHHHHHHHHHHCCCEEEEEEeccC
Confidence 399999999999999999999999975443
No 133
>2jvf_A De novo protein M7; tetrapeptide fragment-based protein design, artificial fold; NMR {Unidentified} SCOP: k.41.1.1
Probab=26.59 E-value=77 Score=19.18 Aligned_cols=26 Identities=19% Similarity=0.530 Sum_probs=21.2
Q ss_pred chhhHHHHHHHHHHhcCCe--EEEeeCC
Q psy2047 202 QFIFVLDILGHYMDIRGWR--HLRLDGA 227 (233)
Q Consensus 202 q~~~~Ld~l~~~l~~~gi~--~~rldG~ 227 (233)
|-...|++|...|++.|+. -+|+.|.
T Consensus 61 qakelleliarllqklgykdinvrvngt 88 (96)
T 2jvf_A 61 QAKELLELIARLLQKLGYKDINVRVNGT 88 (96)
T ss_dssp HHHHHHHHHHHHHHHHTCSEEEEEEETT
T ss_pred HHHHHHHHHHHHHHHhCCCceEEEEcCE
Confidence 4457899999999999986 5778775
No 134
>2lsn_A Reverse transcriptase; RNAse H, viral protein; NMR {Simian foamy virus}
Probab=26.46 E-value=1.2e+02 Score=21.54 Aligned_cols=36 Identities=11% Similarity=0.118 Sum_probs=24.2
Q ss_pred ccHHHHHHHHhHHHhCCCeEEEEechhhHHHHHHHH
Q psy2047 178 GKLKKLDEILPDLKKNGHRVLIFSQFIFVLDILGHY 213 (233)
Q Consensus 178 ~Kl~~l~~lL~~~~~~~~KvlIFSq~~~~Ld~l~~~ 213 (233)
+=+.+|...|+...+.+.++.|+|-+.-.++-|..-
T Consensus 59 Aei~Al~~al~~al~~~~~v~I~TDS~Yvi~~it~w 94 (165)
T 2lsn_A 59 AEIAAVEFACKKALKIPGPVLVITDSFYVAESANKE 94 (165)
T ss_dssp HHHHHHHHHHHHHHHSSSCEEEEESCHHHHHHHHTH
T ss_pred HHHHHHHHHHHHHhcCCCeEEEEeChHHHHhhhhhh
Confidence 335556556666566778999999887776665543
No 135
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=26.10 E-value=61 Score=23.70 Aligned_cols=28 Identities=21% Similarity=0.233 Sum_probs=24.6
Q ss_pred ccccHHHHHHHHhHHHhCCCeEEEEech
Q psy2047 176 ESGKLKKLDEILPDLKKNGHRVLIFSQF 203 (233)
Q Consensus 176 ~s~Kl~~l~~lL~~~~~~~~KvlIFSq~ 203 (233)
.|||-..++.++......|.||+||...
T Consensus 18 gsGKTT~ll~~a~r~~~~g~kV~v~k~~ 45 (191)
T 1xx6_A 18 YSGKSEELIRRIRRAKIAKQKIQVFKPE 45 (191)
T ss_dssp TSSHHHHHHHHHHHHHHTTCCEEEEEEC
T ss_pred CCcHHHHHHHHHHHHHHCCCEEEEEEec
Confidence 3999999999999998889999999644
No 136
>1xty_A PTH, peptidyl-tRNA hydrolase; mixed beta sheet; 1.80A {Pyrococcus abyssi}
Probab=26.02 E-value=1.5e+02 Score=19.83 Aligned_cols=41 Identities=7% Similarity=0.058 Sum_probs=31.9
Q ss_pred HHHHhHHHhCCC-eEEEEechhhHHHHHHHHHHhcCCeEEEe
Q psy2047 184 DEILPDLKKNGH-RVLIFSQFIFVLDILGHYMDIRGWRHLRL 224 (233)
Q Consensus 184 ~~lL~~~~~~~~-KvlIFSq~~~~Ld~l~~~l~~~gi~~~rl 224 (233)
.+.+..|...|. |+++-......|.-|...++..|+++..+
T Consensus 43 ~~~~~~W~~~g~~KiVlk~~~e~el~~l~~~a~~~gl~~~~i 84 (120)
T 1xty_A 43 KEWLNEWLHQGQPKIIVKVNSLDEIISRAKKAETMNLPFSII 84 (120)
T ss_dssp HHHHHHHHHTTCCEEEEEESSHHHHHHHHHHHHHTTCCEEEE
T ss_pred HHHHHHHHHCCCcEEEEecCCHHHHHHHHHHHHHCCCCEEEE
Confidence 466777777765 88888878788888888888999997555
No 137
>3ilx_A First ORF in transposon ISC1904; sulfolobus solfataricus P2, structural G PSI-2, protein structure initiative; 2.00A {Sulfolobus solfataricus} PDB: 3lhf_A
Probab=25.57 E-value=1.2e+02 Score=20.92 Aligned_cols=49 Identities=16% Similarity=0.101 Sum_probs=31.1
Q ss_pred HHHHHHHHhHHHhCCCeEEEEechh----hHHHHHHHHHHhcCCeEEEeeCCc
Q psy2047 180 LKKLDEILPDLKKNGHRVLIFSQFI----FVLDILGHYMDIRGWRHLRLDGAT 228 (233)
Q Consensus 180 l~~l~~lL~~~~~~~~KvlIFSq~~----~~Ld~l~~~l~~~gi~~~rldG~~ 228 (233)
-..+.++|..+....-.+||+...- .+.++|...|...|+.++.+++.+
T Consensus 49 Rp~l~~ll~~~~~g~id~vvv~~ldRL~R~~~~~l~~~l~~~gv~v~~~~~~~ 101 (143)
T 3ilx_A 49 RKGFLKLLRMILNNEVSRVITAYPDRLVRFGFEILEEVCKAHNCEIVVLNQED 101 (143)
T ss_dssp CHHHHHHHHHHHTTCEEEEEESSHHHHCSSCHHHHHHHHHHTTCEEEESCSSC
T ss_pred cHHHHHHHHHHHhCCCCEEEEEeCCcccccHHHHHHHHHHHcCCEEEEEeCCC
Confidence 3445556665543322445544432 466778888999999999888753
No 138
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A
Probab=25.38 E-value=1.2e+02 Score=28.96 Aligned_cols=56 Identities=7% Similarity=-0.039 Sum_probs=45.4
Q ss_pred hccccHHHHHHHHhHHHhCCCeEEEEechhhHHHHHHHHHHh---cCCeEEEeeCCccc
Q psy2047 175 VESGKLKKLDEILPDLKKNGHRVLIFSQFIFVLDILGHYMDI---RGWRHLRLDGATQV 230 (233)
Q Consensus 175 ~~s~Kl~~l~~lL~~~~~~~~KvlIFSq~~~~Ld~l~~~l~~---~gi~~~rldG~~~~ 230 (233)
..|||-.+.+-.+......+.++||.+.-+....-+...+.. .|++...++|+++.
T Consensus 102 TGSGKTl~~l~~il~~~~~~~~~Lil~PtreLa~Q~~~~l~~l~~~~i~v~~l~Gg~~~ 160 (1104)
T 4ddu_A 102 TGVGKTTFGMMTALWLARKGKKSALVFPTVTLVKQTLERLQKLADEKVKIFGFYSSMKK 160 (1104)
T ss_dssp TTCCHHHHHHHHHHHHHTTTCCEEEEESSHHHHHHHHHHHHTTSCTTSCEEEECTTCCT
T ss_pred CCCcHHHHHHHHHHHHHhcCCeEEEEechHHHHHHHHHHHHHhhCCCCeEEEEeCCCCH
Confidence 348998877666655556778999999999888888888877 67899999999876
No 139
>1rzw_A Protein AF2095(GR4); beta-sheet of 4 parallel, anti-parallel beta-strands and 3 alpha-helices, structural genomics, PSI; NMR {Archaeoglobus fulgidus} SCOP: c.131.1.1 PDB: 3erj_A
Probab=24.67 E-value=1.5e+02 Score=20.10 Aligned_cols=40 Identities=13% Similarity=0.059 Sum_probs=31.2
Q ss_pred HHHhHHHhCCC-eEEEEechhhHHHHHHHHHHhcCCeEEEe
Q psy2047 185 EILPDLKKNGH-RVLIFSQFIFVLDILGHYMDIRGWRHLRL 224 (233)
Q Consensus 185 ~lL~~~~~~~~-KvlIFSq~~~~Ld~l~~~l~~~gi~~~rl 224 (233)
+.++.|...|. |+++-......|.-|....+..|+++..+
T Consensus 38 ~~l~~W~~~G~~Kvvlk~~~e~el~~L~~~a~~~gl~~~~I 78 (123)
T 1rzw_A 38 SLRRKWLDEGQKKVVLKVKSLEELLGIKHKAESLGLVTGLV 78 (123)
T ss_dssp THHHHTGGGCSSEEEEECSCHHHHHHHHHHHHHTTCCEEEE
T ss_pred HHHHHHHHCCCcEEEEecCCHHHHHHHHHHHHHCCCCEEEE
Confidence 46677766675 88888888788888888888999987655
No 140
>2lbw_A H/ACA ribonucleoprotein complex subunit 2; L7AE, snoRNP, scaRNP, RNA binding protein; NMR {Saccharomyces cerevisiae} PDB: 2lbx_A
Probab=24.66 E-value=1.4e+02 Score=19.93 Aligned_cols=40 Identities=8% Similarity=0.125 Sum_probs=29.4
Q ss_pred HhHHHhCCCeEEEEechhhH---HHHHHHHHHhcCCeEEEeeC
Q psy2047 187 LPDLKKNGHRVLIFSQFIFV---LDILGHYMDIRGWRHLRLDG 226 (233)
Q Consensus 187 L~~~~~~~~KvlIFSq~~~~---Ld~l~~~l~~~gi~~~rldG 226 (233)
++.+....-+.||.+.-.+. ...|..++...|++|+.+.+
T Consensus 29 ~kai~~gkakLViiA~D~~~~~~~~~l~~lc~~~~VP~~~v~s 71 (121)
T 2lbw_A 29 VKALRKGEKGLVVIAGDIWPADVISHIPVLCEDHSVPYIFIPS 71 (121)
T ss_dssp HHHHHHSCCCEEEECTTCSCTTHHHHHHHHHHHTCCCEEECCC
T ss_pred HHHHHcCCceEEEEeCCCCHHHHHHHHHHHHHhcCCcEEEECC
Confidence 34444445599999987643 66788889999999988764
No 141
>1byy_A Protein (sodium channel alpha-subunit); membrane protein; NMR {Rattus norvegicus} SCOP: j.12.1.1
Probab=24.56 E-value=44 Score=18.95 Aligned_cols=16 Identities=19% Similarity=0.320 Sum_probs=13.4
Q ss_pred eeCCHHHHHHHHHHHH
Q psy2047 59 VPMIPSQAEKYRGLME 74 (233)
Q Consensus 59 v~ls~~q~~lY~~~~~ 74 (233)
+-||+.|++.|+.+..
T Consensus 15 ~fmT~~Qkk~y~amkk 30 (53)
T 1byy_A 15 IFMTEEQKKYYNAMKK 30 (53)
T ss_dssp SCCCHHHHHHHHHHHT
T ss_pred cccCHHHHHHHHHHHH
Confidence 4679999999999755
No 142
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=24.49 E-value=2.3e+02 Score=22.91 Aligned_cols=53 Identities=13% Similarity=0.130 Sum_probs=38.8
Q ss_pred hccccHHHHHHHHhHHHhCCCeEEEEech--------------------------hhHHHHHHHHHHhcCCeEEEeeCC
Q psy2047 175 VESGKLKKLDEILPDLKKNGHRVLIFSQF--------------------------IFVLDILGHYMDIRGWRHLRLDGA 227 (233)
Q Consensus 175 ~~s~Kl~~l~~lL~~~~~~~~KvlIFSq~--------------------------~~~Ld~l~~~l~~~gi~~~rldG~ 227 (233)
..++|-.+...++......|.+++.|+-- ...++++.......++..+.||.=
T Consensus 72 pGsGKTtLal~la~~~~~~g~~vlyid~E~s~~~~~a~~~g~~~~~l~i~~~~~~e~~~~~~~~l~~~~~~~lVVIDsl 150 (356)
T 1u94_A 72 ESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALARSGAVDVIVVDSV 150 (356)
T ss_dssp TTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHHHTCCSEEEEECG
T ss_pred CCCCHHHHHHHHHHHHHHCCCeEEEEeCCCCccHHHHHHcCCChhheeeeCCCCHHHHHHHHHHHHhccCCCEEEEcCH
Confidence 44899999999998888788899988751 123455555555677888888853
No 143
>3ocu_A Lipoprotein E; hydrolase, outer membrane; HET: NMN; 1.35A {Haemophilus influenzae} PDB: 3ocv_A* 3ocw_A* 3ocx_A* 3ocz_A* 3ocy_A* 3sf0_A* 2hlk_A 2hll_A 3et4_A 3et5_A
Probab=23.83 E-value=1.1e+02 Score=23.66 Aligned_cols=41 Identities=10% Similarity=-0.095 Sum_probs=32.7
Q ss_pred HHHHHHHhHHHhCCCeEEEEechhh--HHHHHHHHHHhcCCeE
Q psy2047 181 KKLDEILPDLKKNGHRVLIFSQFIF--VLDILGHYMDIRGWRH 221 (233)
Q Consensus 181 ~~l~~lL~~~~~~~~KvlIFSq~~~--~Ld~l~~~l~~~gi~~ 221 (233)
.-+.++|+.+...|.+++|.|.-.. .-+.....|+..||++
T Consensus 104 pG~~ell~~L~~~G~ki~ivTgR~~~~~r~~T~~~L~~lGi~~ 146 (262)
T 3ocu_A 104 PGAVEFNNYVNSHNGKVFYVTNRKDSTEKSGTIDDMKRLGFNG 146 (262)
T ss_dssp TTHHHHHHHHHHTTEEEEEEEEEETTTTHHHHHHHHHHHTCSC
T ss_pred ccHHHHHHHHHHCCCeEEEEeCCCccchHHHHHHHHHHcCcCc
Confidence 3456778888888999999997655 6788888889999984
No 144
>1v5x_A PRA isomerase, phosphoribosylanthranilate isomerase; alpha-beta barrel, TRPF, riken structural genomics/proteomics initiative, RSGI; 2.00A {Thermus thermophilus} SCOP: c.1.2.4
Probab=23.67 E-value=1.2e+02 Score=22.44 Aligned_cols=47 Identities=17% Similarity=0.075 Sum_probs=32.6
Q ss_pred HHHHHHHhHHHhCCCeEEEEechhhHHHHHHHHHHhcCCeEEEeeCCcc
Q psy2047 181 KKLDEILPDLKKNGHRVLIFSQFIFVLDILGHYMDIRGWRHLRLDGATQ 229 (233)
Q Consensus 181 ~~l~~lL~~~~~~~~KvlIFSq~~~~Ld~l~~~l~~~gi~~~rldG~~~ 229 (233)
....++...+...-.+|-||..- ..+.+...+...++.+++|+|.-+
T Consensus 40 ~~a~~i~~~~~~~~~~VgVfvn~--~~~~i~~~~~~~~ld~vQLHG~e~ 86 (203)
T 1v5x_A 40 EAARAIGEALGPFVVRVGVFRDQ--PPEEVLRLMEEARLQVAQLHGEEP 86 (203)
T ss_dssp HHHHHHHHHSCSSSEEEEEESSC--CHHHHHHHHHHTTCSEEEECSCCC
T ss_pred HHHHHHHHhCCCCCCEEEEEeCC--CHHHHHHHHHhhCCCEEEECCCCC
Confidence 33334444432234588888754 478888888889999999999854
No 145
>3dmn_A Putative DNA helicase; APC89291.2, lactobacillus plantarum WCFS1, STR genomics, PSI-2, midwest center for structural genomics; HET: MSE; 1.66A {Lactobacillus plantarum}
Probab=23.47 E-value=2e+02 Score=20.27 Aligned_cols=47 Identities=11% Similarity=0.087 Sum_probs=33.6
Q ss_pred HHHHHHhHHHhCCCeEEEEechhhHHHHHHHHHHhcCCeEEEeeCCc
Q psy2047 182 KLDEILPDLKKNGHRVLIFSQFIFVLDILGHYMDIRGWRHLRLDGAT 228 (233)
Q Consensus 182 ~l~~lL~~~~~~~~KvlIFSq~~~~Ld~l~~~l~~~gi~~~rldG~~ 228 (233)
.+.+.|........-+-|.+........|+..|...|+++..+++..
T Consensus 49 ~i~~~I~~~~~g~~~iAVL~r~~~~~~~l~~~L~~~gi~~~~l~~~~ 95 (174)
T 3dmn_A 49 QVVDQLAMNDSERDTTAIIGKSLAECEALTKALKARGEQVTLIQTEN 95 (174)
T ss_dssp HHHHHHHHHHHTTCCEEEEESSHHHHHHHHHHHHTTTCCEEECSSCC
T ss_pred HHHHHHHHhccCCCcEEEEecCHHHHHHHHHHHHHcCCcceeecccc
Confidence 34444544222345677888888888999999999999988877643
No 146
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=22.89 E-value=1.1e+02 Score=24.85 Aligned_cols=55 Identities=16% Similarity=0.044 Sum_probs=41.6
Q ss_pred ccccHHHHHHHHhHHH-hCCCeEEEEechhhHHHHHHHHHHhc-CC---eEEEeeCCccc
Q psy2047 176 ESGKLKKLDEILPDLK-KNGHRVLIFSQFIFVLDILGHYMDIR-GW---RHLRLDGATQV 230 (233)
Q Consensus 176 ~s~Kl~~l~~lL~~~~-~~~~KvlIFSq~~~~Ld~l~~~l~~~-gi---~~~rldG~~~~ 230 (233)
.+||-......+.... ..+.++||.+......+-....+.+. |+ .+..++|+.+.
T Consensus 33 G~GKT~~~~~~~~~~~~~~~~~~liv~P~~~L~~q~~~~~~~~~~~~~~~v~~~~g~~~~ 92 (494)
T 1wp9_A 33 GLGKTLIAMMIAEYRLTKYGGKVLMLAPTKPLVLQHAESFRRLFNLPPEKIVALTGEKSP 92 (494)
T ss_dssp TSCHHHHHHHHHHHHHHHSCSCEEEECSSHHHHHHHHHHHHHHBCSCGGGEEEECSCSCH
T ss_pred CCCHHHHHHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHHHHHhCcchhheEEeeCCcch
Confidence 3899888877765544 45779999999988777666666655 66 88999998754
No 147
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=22.84 E-value=1.5e+02 Score=21.10 Aligned_cols=55 Identities=20% Similarity=0.305 Sum_probs=33.4
Q ss_pred cccHHHHHHHHhHHHh------CCCeEEEEechhhHHHH-HHHHHHh---cCCeEEEeeCCcccC
Q psy2047 177 SGKLKKLDEILPDLKK------NGHRVLIFSQFIFVLDI-LGHYMDI---RGWRHLRLDGATQVS 231 (233)
Q Consensus 177 s~Kl~~l~~lL~~~~~------~~~KvlIFSq~~~~Ld~-l~~~l~~---~gi~~~rldG~~~~~ 231 (233)
+||-......+..... .+.++||++......+- +...+.. .++....++|+.+..
T Consensus 59 sGKT~~~~~~~~~~~~~~~~~~~~~~~lil~p~~~L~~q~~~~~~~~~~~~~~~v~~~~g~~~~~ 123 (216)
T 3b6e_A 59 SGKTRVAVYIAKDHLDKKKKASEPGKVIVLVNKVLLVEQLFRKEFQPFLKKWYRVIGLSGDTQLK 123 (216)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCCCCEEEEESSHHHHHHHHHHTHHHHHTTTSCEEECCC---CC
T ss_pred CCHHHHHHHHHHHHHhhcccccCCCcEEEEECHHHHHHHHHHHHHHHHhccCceEEEEeCCcccc
Confidence 7887776665554322 15699999887766554 4444433 277888888886543
No 148
>2gmw_A D,D-heptose 1,7-bisphosphate phosphatase; Zn-binding protein, hydrolase; 1.50A {Escherichia coli} SCOP: c.108.1.19 PDB: 3esq_A 3esr_A 3l1u_A 3l1v_A 3l8e_A 3l8f_A 3l8g_A*
Probab=22.79 E-value=1.5e+02 Score=21.50 Aligned_cols=38 Identities=13% Similarity=0.191 Sum_probs=28.9
Q ss_pred HHHHHhHHHhCCCeEEEEechhhH-------------HHHHHHHHHhcCCe
Q psy2047 183 LDEILPDLKKNGHRVLIFSQFIFV-------------LDILGHYMDIRGWR 220 (233)
Q Consensus 183 l~~lL~~~~~~~~KvlIFSq~~~~-------------Ld~l~~~l~~~gi~ 220 (233)
+.++|+.+.+.|-++.|+|..... ...+...|+..|+.
T Consensus 55 ~~e~L~~L~~~G~~~~ivTn~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~ 105 (211)
T 2gmw_A 55 VIDAMRELKKMGFALVVVTNQSGIARGKFTEAQFETLTEWMDWSLADRDVD 105 (211)
T ss_dssp HHHHHHHHHHTTCEEEEEEECTHHHHTSSCHHHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHCCCeEEEEECcCCcCCCccCHHHHHHHHHHHHHHHHHcCCc
Confidence 456777778889999999987642 46777788888875
No 149
>2ct6_A SH3 domain-binding glutamic acid-rich-like protein 2; SH3BGRL2,FASH3, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=22.70 E-value=61 Score=21.14 Aligned_cols=16 Identities=6% Similarity=0.225 Sum_probs=8.8
Q ss_pred HHHHHHhcCCeEEEee
Q psy2047 210 LGHYMDIRGWRHLRLD 225 (233)
Q Consensus 210 l~~~l~~~gi~~~rld 225 (233)
...+|+..|++|..+|
T Consensus 30 ak~~L~~~gi~y~~vd 45 (111)
T 2ct6_A 30 VVRFLEANKIEFEEVD 45 (111)
T ss_dssp HHHHHHHTTCCEEEEE
T ss_pred HHHHHHHcCCCEEEEE
Confidence 4555555566655554
No 150
>3fpn_A Geobacillus stearothermophilus UVRA interaction domain; UVRA, nucleotide excision repair, DNA repair, DNA binding protein; 1.80A {Geobacillus stearothermophilus}
Probab=22.68 E-value=85 Score=21.13 Aligned_cols=36 Identities=14% Similarity=0.260 Sum_probs=25.7
Q ss_pred hCCCeEEEEechh----h-HHHHHHHHHHhcCCeEEEeeCCc
Q psy2047 192 KNGHRVLIFSQFI----F-VLDILGHYMDIRGWRHLRLDGAT 228 (233)
Q Consensus 192 ~~~~KvlIFSq~~----~-~Ld~l~~~l~~~gi~~~rldG~~ 228 (233)
..|.|+.|.+..+ . .-++++ .|.++|+.-+|+||.+
T Consensus 17 ~egtri~iLAPvv~~rKg~~~~ll~-~l~~~Gf~RvrvDGe~ 57 (119)
T 3fpn_A 17 PERTKMQILAPIVSGKKGTHAKTLE-DIRKQGYVRVRIDREM 57 (119)
T ss_dssp CTTCEEEEEEEEEEEECSCCHHHHH-HHHHTTCCEEEETTEE
T ss_pred CCCCEEEEEEEEeeCCCCcHHHHHH-HHHhCCCeEEEECCEE
Confidence 3477998888764 2 334444 4578999999999974
No 151
>3bbn_B Ribosomal protein S2; small ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea} SCOP: i.1.1.1
Probab=22.64 E-value=69 Score=24.44 Aligned_cols=52 Identities=13% Similarity=0.072 Sum_probs=39.7
Q ss_pred cccHHHHHHHHhHHHhCCCeEEEEechhhHHHHHHHHHHhcCCeEE--EeeCCc
Q psy2047 177 SGKLKKLDEILPDLKKNGHRVLIFSQFIFVLDILGHYMDIRGWRHL--RLDGAT 228 (233)
Q Consensus 177 s~Kl~~l~~lL~~~~~~~~KvlIFSq~~~~Ld~l~~~l~~~gi~~~--rldG~~ 228 (233)
-.++....+.|.....+|.++++.+.-....+.+..+-...|-.|+ |.-|+|
T Consensus 47 ~~~L~~A~~~i~~~~~~~~~iLfVgTk~~~~~~V~~~A~~~g~~yv~~rWlgG~ 100 (231)
T 3bbn_B 47 ARFLSEACDLVFDASSRGKQFLIVGTKNKAADSVARAAIRARCHYVNKKWLGGM 100 (231)
T ss_dssp HHHTHHHHHHSHHHHTTTCCEEEECCCTTTHHHHHHHHHHHTCEECCSSCCSCS
T ss_pred HHHHHHHHHHHHHHHhCCCEEEEEeCcHHHHHHHHHHHHHhCCccccccccCCC
Confidence 3456666667777777888999999988889999988888887776 455554
No 152
>2fpr_A Histidine biosynthesis bifunctional protein HISB; histidinola phosphate phosphatase, bifunctional enzyme structural genomics; 1.70A {Escherichia coli} SCOP: c.108.1.19 PDB: 2fps_A 2fpu_A* 2fpx_A 2fpw_A*
Probab=22.47 E-value=1.8e+02 Score=20.34 Aligned_cols=39 Identities=13% Similarity=0.163 Sum_probs=28.2
Q ss_pred HHHHHhHHHhCCCeEEEEechh-------------hHHHHHHHHHHhcCCeE
Q psy2047 183 LDEILPDLKKNGHRVLIFSQFI-------------FVLDILGHYMDIRGWRH 221 (233)
Q Consensus 183 l~~lL~~~~~~~~KvlIFSq~~-------------~~Ld~l~~~l~~~gi~~ 221 (233)
+.++|+.+...|-++.|+|... ..-..+...|+..|+.+
T Consensus 47 ~~e~L~~L~~~G~~l~i~Tn~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~f 98 (176)
T 2fpr_A 47 VIPQLLKLQKAGYKLVMITNQDGLGTQSFPQADFDGPHNLMMQIFTSQGVQF 98 (176)
T ss_dssp HHHHHHHHHHTTEEEEEEEECTTTTBTTBCHHHHHHHHHHHHHHHHHTTCCE
T ss_pred HHHHHHHHHHCCCEEEEEECCccccccccchHhhhhhHHHHHHHHHHcCCCe
Confidence 4466777777888999999852 14566777788788764
No 153
>3lfu_A DNA helicase II; SF1 helicase, ATP-binding, DNA damage, DNA REP replication, DNA-binding, hydrolase, nucleotide-B SOS response; HET: DNA; 1.80A {Escherichia coli} PDB: 2is6_A* 2is2_A* 2is1_A* 2is4_A*
Probab=22.18 E-value=1.5e+02 Score=25.89 Aligned_cols=49 Identities=10% Similarity=0.017 Sum_probs=35.5
Q ss_pred HHHHHHHHhHHHhCC---CeEEEEechhhHHHHHHHHHHhcCCeEEEeeCCcc
Q psy2047 180 LKKLDEILPDLKKNG---HRVLIFSQFIFVLDILGHYMDIRGWRHLRLDGATQ 229 (233)
Q Consensus 180 l~~l~~lL~~~~~~~---~KvlIFSq~~~~Ld~l~~~l~~~gi~~~rldG~~~ 229 (233)
...+.+.|.++...| ..+.|.+........|+..|...||+|... |+.+
T Consensus 330 ~~~ia~~I~~l~~~g~~~~diaVL~r~~~~~~~l~~~l~~~~Ip~~~~-~~~~ 381 (647)
T 3lfu_A 330 ARFVVNRIKTWQDNGGALAECAILYRSNAQSRVLEEALLQASMPYRIY-GGMR 381 (647)
T ss_dssp HHHHHHHHHHHHHTTCCGGGEEEEESSGGGHHHHHHHHHHTTCCEEES-SSCC
T ss_pred HHHHHHHHHHHHHcCCCccCEEEEEeCchhHHHHHHHHHHCCCCEEEe-CCCC
Confidence 345555566655554 467777777889999999999999998754 4444
No 154
>3l8h_A Putative haloacid dehalogenase-like hydrolase; HAD superfamily, GMHB, D-glycero-D-manno-heptose-1, 7-bispho phosphatase; HET: FX1; 1.68A {Bordetella bronchiseptica}
Probab=22.15 E-value=2e+02 Score=19.81 Aligned_cols=41 Identities=10% Similarity=0.046 Sum_probs=29.7
Q ss_pred HHHHHhHHHhCCCeEEEEechhh-------------HHHHHHHHHHhcC--CeEEE
Q psy2047 183 LDEILPDLKKNGHRVLIFSQFIF-------------VLDILGHYMDIRG--WRHLR 223 (233)
Q Consensus 183 l~~lL~~~~~~~~KvlIFSq~~~-------------~Ld~l~~~l~~~g--i~~~r 223 (233)
+.+.|+.+.+.|.++.|+|.... +.+.+...|+..| +..+.
T Consensus 32 ~~~~l~~L~~~g~~~~i~Tn~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~ 87 (179)
T 3l8h_A 32 SLQAIARLTQADWTVVLATNQSGLARGLFDTATLNAIHDKMHRALAQMGGVVDAIF 87 (179)
T ss_dssp HHHHHHHHHHTTCEEEEEEECTTTTTTSSCHHHHHHHHHHHHHHHHHTTCCCCEEE
T ss_pred HHHHHHHHHHCCCEEEEEECCCccccCcCCHHHHHHHHHHHHHHHHhCCCceeEEE
Confidence 45677777888999999998753 2467778888888 65443
No 155
>1rrm_A Lactaldehyde reductase; structural genomics, dehydrogenase, PSI, protein structure initiative; HET: APR; 1.60A {Escherichia coli} SCOP: e.22.1.2 PDB: 2bi4_A* 2bl4_A*
Probab=21.38 E-value=1.6e+02 Score=24.01 Aligned_cols=51 Identities=20% Similarity=0.213 Sum_probs=33.6
Q ss_pred cccHHHHHHHHhHHHhCCCeEEEEechh----hHHHHHHHHHHhcCCeEEEeeCCcc
Q psy2047 177 SGKLKKLDEILPDLKKNGHRVLIFSQFI----FVLDILGHYMDIRGWRHLRLDGATQ 229 (233)
Q Consensus 177 s~Kl~~l~~lL~~~~~~~~KvlIFSq~~----~~Ld~l~~~l~~~gi~~~rldG~~~ 229 (233)
.+-+..+-+.++.+ ...|++|++.-. ..++-+...|+..|+.+..++|-.+
T Consensus 16 ~g~~~~l~~~l~~~--g~~~~livtd~~~~~~g~~~~v~~~L~~~g~~~~~~~~~~~ 70 (386)
T 1rrm_A 16 RGAVGALTDEVKRR--GYQKALIVTDKTLVQCGVVAKVTDKMDAAGLAWAIYDGVVP 70 (386)
T ss_dssp TTGGGGHHHHHHHH--TCCEEEEECBHHHHHTTHHHHHHHHHHHTTCEEEEECBCCS
T ss_pred cCHHHHHHHHHHHc--CCCEEEEEECcchhhchHHHHHHHHHHHcCCeEEEECCccC
Confidence 34444455555543 236888888532 2678888888889999888886543
No 156
>3r15_A Factor H binding protein; protein binding; 1.70A {Treponema denticola} PDB: 3qz0_A
Probab=21.37 E-value=55 Score=20.88 Aligned_cols=26 Identities=12% Similarity=0.206 Sum_probs=19.7
Q ss_pred EEEeeCCHHHHHHHHHHHHHHhhhcC
Q psy2047 56 VIKVPMIPSQAEKYRGLMEDFKKTAN 81 (233)
Q Consensus 56 ~v~v~ls~~q~~lY~~~~~~~~~~~~ 81 (233)
+....|+-+|++.|+.++........
T Consensus 13 ~~~~~Mn~~Qk~~Yd~FI~~Le~~ak 38 (93)
T 3r15_A 13 DKTFKMNTAQKAHYEKFINALENELK 38 (93)
T ss_dssp --CTTSCHHHHHHHHHHHHHHHHHTT
T ss_pred ccchhhhHHHHHHHHHHHHHHHHHHh
Confidence 45577999999999999987765543
No 157
>2xzm_B RPS0E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_B
Probab=21.25 E-value=66 Score=24.75 Aligned_cols=51 Identities=12% Similarity=0.129 Sum_probs=38.0
Q ss_pred cccHHHHHHHHhHHHhCCCeEEEEechhhHHHHHHHHHHhcCCeEE---EeeCCc
Q psy2047 177 SGKLKKLDEILPDLKKNGHRVLIFSQFIFVLDILGHYMDIRGWRHL---RLDGAT 228 (233)
Q Consensus 177 s~Kl~~l~~lL~~~~~~~~KvlIFSq~~~~Ld~l~~~l~~~gi~~~---rldG~~ 228 (233)
-.++......|.. .+++.++++.+.-....+.+..+....|-.|+ |..|+|
T Consensus 50 ~~~L~~A~~~i~~-i~~~~~iLfVgtk~~~~~~V~~~A~~~g~~yv~~~RWlgG~ 103 (241)
T 2xzm_B 50 WQKIKLAARVIAA-VQHPEDVMVVCSRIYGQRAAIKFAGYTHCKSTSSSRWTPGT 103 (241)
T ss_dssp HHHHHHHHHHHHH-CSSGGGEEEECCSHHHHHHHHHHHHHHTCBCCCCSSCCTTT
T ss_pred HHHHHHHHHHHHH-HhCCCeEEEEECCHHHHHHHHHHHHHhCCEEeccccccCCc
Confidence 3456655666666 35677999998888888888888888888877 666765
No 158
>3ox4_A Alcohol dehydrogenase 2; iron, NAD, oxidoreductase; HET: NAD; 2.00A {Zymomonas mobilis} PDB: 3owo_A*
Probab=21.13 E-value=1.2e+02 Score=24.72 Aligned_cols=54 Identities=20% Similarity=0.196 Sum_probs=34.7
Q ss_pred hhccccHHHHHHHHhHHHhCCCeEEEEechh----hHHHHHHHHHHhcCCeEEEeeCCcc
Q psy2047 174 VVESGKLKKLDEILPDLKKNGHRVLIFSQFI----FVLDILGHYMDIRGWRHLRLDGATQ 229 (233)
Q Consensus 174 ~~~s~Kl~~l~~lL~~~~~~~~KvlIFSq~~----~~Ld~l~~~l~~~gi~~~rldG~~~ 229 (233)
+...+-+..+-+.++.+ ...|++|.+.-. ..++-+...|+..|+.+..++|-.+
T Consensus 13 ~~G~g~~~~l~~~~~~~--g~~~~liVtd~~~~~~g~~~~v~~~L~~~gi~~~~~~~v~~ 70 (383)
T 3ox4_A 13 EMGEGSLEKAIKDLNGS--GFKNALIVSDAFMNKSGVVKQVADLLKAQGINSAVYDGVMP 70 (383)
T ss_dssp EESTTHHHHHHHTTTTS--CCCEEEEEEEHHHHHTTHHHHHHHHHHTTTCEEEEEEEECS
T ss_pred EECCCHHHHHHHHHHHc--CCCEEEEEECCchhhCchHHHHHHHHHHcCCeEEEECCccC
Confidence 33345555555555543 126888777643 1467788888889999988876543
No 159
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=21.05 E-value=1.8e+02 Score=20.97 Aligned_cols=55 Identities=11% Similarity=0.029 Sum_probs=35.8
Q ss_pred ccccHHH-HHHHHhHHHhC--CCeEEEEechhhHHHHHHHHHHh----cCCeEEEeeCCccc
Q psy2047 176 ESGKLKK-LDEILPDLKKN--GHRVLIFSQFIFVLDILGHYMDI----RGWRHLRLDGATQV 230 (233)
Q Consensus 176 ~s~Kl~~-l~~lL~~~~~~--~~KvlIFSq~~~~Ld~l~~~l~~----~gi~~~rldG~~~~ 230 (233)
.|||-.+ ++-++..+... +.++||.+.......-+...+.. .++....+.|+.+.
T Consensus 61 GsGKT~~~~~~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~ 122 (224)
T 1qde_A 61 GTGKTGTFSIAALQRIDTSVKAPQALMLAPTRELALQIQKVVMALAFHMDIKVHACIGGTSF 122 (224)
T ss_dssp TSSHHHHHHHHHHHHCCTTCCSCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEEEECC----
T ss_pred CCcHHHHHHHHHHHHHhccCCCceEEEEECCHHHHHHHHHHHHHHhcccCceEEEEeCCcch
Confidence 3899876 66666665432 45899999887776655555543 47888888888764
No 160
>1urh_A 3-mercaptopyruvate sulfurtransferase; rhodanese; 2.8A {Escherichia coli} SCOP: c.46.1.2 c.46.1.2
Probab=20.91 E-value=88 Score=24.04 Aligned_cols=38 Identities=8% Similarity=-0.086 Sum_probs=28.8
Q ss_pred CCCeEEEEechhhHHHHHHHHHHhcCCe-EEEeeCCccc
Q psy2047 193 NGHRVLIFSQFIFVLDILGHYMDIRGWR-HLRLDGATQV 230 (233)
Q Consensus 193 ~~~KvlIFSq~~~~Ld~l~~~l~~~gi~-~~rldG~~~~ 230 (233)
.+.++||+|..=..=......|...|+. ...++|++..
T Consensus 229 ~~~~ivv~C~~G~rs~~a~~~L~~~G~~~v~~~~GG~~~ 267 (280)
T 1urh_A 229 YDKPIIVSCGSGVTAAVVLLALATLDVPNVKLYDGAWSE 267 (280)
T ss_dssp SSSCEEEECCSSSTHHHHHHHHHHTTCSSCEEECCSCCC
T ss_pred CCCCEEEECChHHHHHHHHHHHHHcCCCCceeeCChHHH
Confidence 3568999998655555667778889995 8889999753
No 161
>4a17_F RPL7A, 60S ribosomal protein L9; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_F 4a1c_F 4a1e_F
Probab=20.74 E-value=1.3e+02 Score=23.24 Aligned_cols=35 Identities=6% Similarity=0.112 Sum_probs=27.9
Q ss_pred CCeEEEEechhhHHH---HHHHHHHhcCCeEEEeeCCc
Q psy2047 194 GHRVLIFSQFIFVLD---ILGHYMDIRGWRHLRLDGAT 228 (233)
Q Consensus 194 ~~KvlIFSq~~~~Ld---~l~~~l~~~gi~~~rldG~~ 228 (233)
.-+.||+++-++-.+ .|...|.+.||+|+.+.|..
T Consensus 140 KAqLVVIA~DvdPielv~~LPaLCee~~VPY~~V~sK~ 177 (255)
T 4a17_F 140 QAKLVVIAHDVDPIELVIFLPQLCRKNDVPFAFVKGKA 177 (255)
T ss_dssp CCSEEEEESCCSSTHHHHHHHHHHHHTTCCEEEESCHH
T ss_pred CceEEEEeCCCChHHHHHHHHHHHHHcCCCEEEECCHH
Confidence 459999999886555 45778899999999998753
No 162
>3aay_A Putative thiosulfate sulfurtransferase; sulfurtranserase, structural genomics, PSI, structure initiative; 1.90A {Mycobacterium tuberculosis} PDB: 3aax_A 3hwi_A
Probab=20.67 E-value=1.2e+02 Score=23.22 Aligned_cols=47 Identities=13% Similarity=0.102 Sum_probs=30.7
Q ss_pred HHHHHhHH-HhCCCeEEEEechhhHHHHHHHHHHh-cCCe-EEEeeCCcc
Q psy2047 183 LDEILPDL-KKNGHRVLIFSQFIFVLDILGHYMDI-RGWR-HLRLDGATQ 229 (233)
Q Consensus 183 l~~lL~~~-~~~~~KvlIFSq~~~~Ld~l~~~l~~-~gi~-~~rldG~~~ 229 (233)
+.+.+... ...+..+||+|+.-..-......|.. .|+. ...++|++.
T Consensus 214 l~~~~~~~~~~~~~~iv~yC~~G~rs~~a~~~L~~~~G~~~v~~l~GG~~ 263 (277)
T 3aay_A 214 LAKLYADAGLDNSKETIAYCRIGERSSHTWFVLRELLGHQNVKNYDGSWT 263 (277)
T ss_dssp HHHHHHHHTCCTTSCEEEECSSHHHHHHHHHHHHTTSCCSCEEEESSHHH
T ss_pred HHHHHHHcCCCCCCCEEEEcCcHHHHHHHHHHHHHHcCCCcceeeCchHH
Confidence 33444432 23356889998875555566677775 8995 788899864
No 163
>2ouc_A Dual specificity protein phosphatase 10; rhodanese fold, hydrolase; 2.20A {Homo sapiens}
Probab=20.66 E-value=42 Score=22.58 Aligned_cols=36 Identities=17% Similarity=0.275 Sum_probs=26.7
Q ss_pred CCeEEEEechhhH---------HHHHHHHHHhcCCeEEEeeCCcc
Q psy2047 194 GHRVLIFSQFIFV---------LDILGHYMDIRGWRHLRLDGATQ 229 (233)
Q Consensus 194 ~~KvlIFSq~~~~---------Ld~l~~~l~~~gi~~~rldG~~~ 229 (233)
+..+||+++.-.. ...+...|...|++...|+|++.
T Consensus 83 ~~~ivvyc~~g~~~~~~~~~~~~~~~~~~L~~~G~~v~~l~GG~~ 127 (142)
T 2ouc_A 83 SKEIIVYDENTNEPSRVMPSQPLHIVLESLKREGKEPLVLKGGLS 127 (142)
T ss_dssp HSCEEEECSSCCCGGGCCTTSHHHHHHHHHHHTTCCCEEETTHHH
T ss_pred CCcEEEEECCCCchhhcCcccHHHHHHHHHHHcCCcEEEEccCHH
Confidence 4579999877543 34566777888998888999864
No 164
>2wlr_A Putative thiosulfate sulfurtransferase YNJE; rhodanese domains; HET: EPE; 1.45A {Escherichia coli} PDB: 2wlx_A* 3ipo_A* 3ipp_A
Probab=20.28 E-value=1.2e+02 Score=25.03 Aligned_cols=37 Identities=19% Similarity=0.306 Sum_probs=28.7
Q ss_pred CCCeEEEEechhhHHHHHHHHHHhcCCe-EEEeeCCcc
Q psy2047 193 NGHRVLIFSQFIFVLDILGHYMDIRGWR-HLRLDGATQ 229 (233)
Q Consensus 193 ~~~KvlIFSq~~~~Ld~l~~~l~~~gi~-~~rldG~~~ 229 (233)
.+..+||+|..-..-......|...|+. ...++|+++
T Consensus 202 ~~~~ivvyC~~G~~a~~~~~~L~~~G~~~v~~l~Gg~~ 239 (423)
T 2wlr_A 202 HDTTVILYGRDVYAAARVAQIMLYAGVKDVRLLDGGWQ 239 (423)
T ss_dssp TTSEEEEECSSHHHHHHHHHHHHHHTCSCEEEETTTHH
T ss_pred CCCeEEEECCCchHHHHHHHHHHHcCCCCeEEECCCHH
Confidence 3568999998766666777888889994 778999864
Done!