Your job contains 1 sequence.
>psy2047
MDSDSEDDARYEDKRKEQATFEVEQVDQAKRIISPFMLRRLKKDVLTELPKKTALVIKVP
MIPSQAEKYRGLMEDFKKTANPEGSNRSNEISHMSMFMMLRKMANHPLGLRYYFQENTLR
EIADCLVEDPTYKGTNPQYILEDISWLSDYDIHQLSLKHKTLDCAKYKVPDDLVVESGKL
KKLDEILPDLKKNGHRVLIFSQFIFVLDILGHYMDIRGWRHLRLDGATQVSSR
The BLAST search returned 5 gene products which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= psy2047
(233 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
FB|FBgn0032157 - symbol:Etl1 "Etl1 homologue" species:722... 452 2.5e-43 2
UNIPROTKB|Q5FWR0 - symbol:smarcad1 "SWI/SNF-related matri... 402 2.6e-36 1
UNIPROTKB|F1NAD2 - symbol:SMARCAD1 "Uncharacterized prote... 401 3.0e-36 1
UNIPROTKB|E2RG62 - symbol:SMARCAD1 "Uncharacterized prote... 395 1.5e-35 1
UNIPROTKB|J9NX47 - symbol:SMARCAD1 "Uncharacterized prote... 395 1.5e-35 1
UNIPROTKB|J9PA79 - symbol:SMARCAD1 "Uncharacterized prote... 395 1.5e-35 1
UNIPROTKB|F1RWW3 - symbol:SMARCAD1 "Uncharacterized prote... 394 1.9e-35 1
MGI|MGI:95453 - symbol:Smarcad1 "SWI/SNF-related, matrix-... 393 2.4e-35 1
RGD|1309640 - symbol:Smarcad1 "SWI/SNF-related, matrix-as... 393 2.5e-35 1
UNIPROTKB|Q9H4L7 - symbol:SMARCAD1 "SWI/SNF-related matri... 393 2.5e-35 1
UNIPROTKB|E1B7X9 - symbol:SMARCAD1 "SWI/SNF-related matri... 389 6.6e-35 1
POMBASE|SPCC1235.05c - symbol:fft2 "fun thirty related pr... 370 1.1e-32 1
WB|WBGene00010845 - symbol:M03C11.8 species:6239 "Caenorh... 366 1.8e-32 1
ZFIN|ZDB-GENE-091113-61 - symbol:si:dkey-76p7.6 "si:dkey-... 365 2.1e-32 1
ZFIN|ZDB-GENE-050522-499 - symbol:smarcad1 "SWI/SNF-relat... 346 1.9e-31 2
POMBASE|SPAC25A8.01c - symbol:fft3 "fun thirty related pr... 323 6.3e-28 1
POMBASE|SPAC20G8.08c - symbol:fft1 "fun thirty related pr... 293 1.1e-24 1
DICTYBASE|DDB_G0267556 - symbol:DDB_G0267556 "CHR group p... 209 1.9e-24 3
ASPGD|ASPL0000037473 - symbol:AN2973 species:162425 "Emer... 291 2.3e-24 1
TAIR|locus:2051678 - symbol:ETL1 species:3702 "Arabidopsi... 286 4.1e-24 1
SGD|S000000017 - symbol:FUN30 "Snf2p family member with A... 274 1.9e-23 2
ASPGD|ASPL0000052010 - symbol:AN1255 species:162425 "Emer... 171 5.9e-22 2
SGD|S000000966 - symbol:CHD1 "Chromatin remodeler that re... 160 7.1e-19 2
UNIPROTKB|F1SDB8 - symbol:CHD1L "Uncharacterized protein"... 151 1.8e-18 2
POMBASE|SPAC11E3.01c - symbol:swr1 "SNF2 family helicase ... 170 2.1e-18 2
POMBASE|SPAC1783.05 - symbol:hrp1 "ATP-dependent DNA heli... 161 2.5e-18 2
UNIPROTKB|F1P5V4 - symbol:HELLS "Uncharacterized protein"... 229 6.3e-18 1
UNIPROTKB|Q86WJ1 - symbol:CHD1L "Chromodomain-helicase-DN... 149 7.1e-18 2
CGD|CAL0000831 - symbol:orf19.1734 species:5476 "Candida ... 164 8.9e-18 2
UNIPROTKB|F1MFS2 - symbol:CHD1L "Chromodomain-helicase-DN... 148 9.6e-18 2
UNIPROTKB|Q3B7N1 - symbol:CHD1L "Chromodomain-helicase-DN... 148 9.6e-18 2
FB|FBgn0086613 - symbol:Ino80 "Ino80" species:7227 "Droso... 156 1.1e-17 2
MGI|MGI:1915308 - symbol:Chd1l "chromodomain helicase DNA... 149 2.4e-17 2
MGI|MGI:106209 - symbol:Hells "helicase, lymphoid specifi... 161 2.9e-17 3
FB|FBgn0020306 - symbol:dom "domino" species:7227 "Drosop... 158 3.5e-17 3
TAIR|locus:2182978 - symbol:CHR17 "chromatin remodeling f... 142 6.7e-17 3
RGD|1311935 - symbol:Chd1l "chromodomain helicase DNA bin... 149 7.9e-17 2
UNIPROTKB|Q9NRZ9 - symbol:HELLS "Lymphoid-specific helica... 216 1.6e-16 1
CGD|CAL0001763 - symbol:orf19.1871 species:5476 "Candida ... 157 2.2e-16 2
ZFIN|ZDB-GENE-030131-9923 - symbol:hells "helicase, lymph... 166 2.5e-16 2
DICTYBASE|DDB_G0292358 - symbol:ino80 "CHR group protein"... 151 2.9e-16 2
UNIPROTKB|Q12873 - symbol:CHD3 "Chromodomain-helicase-DNA... 145 3.3e-16 2
ASPGD|ASPL0000041040 - symbol:AN9077 species:162425 "Emer... 162 3.3e-16 2
RGD|1311923 - symbol:Chd3 "chromodomain helicase DNA bind... 145 3.9e-16 2
UNIPROTKB|F1N544 - symbol:CHD3 "Uncharacterized protein" ... 145 4.2e-16 2
UNIPROTKB|E2RTI2 - symbol:CHD3 "Uncharacterized protein" ... 145 4.2e-16 2
UNIPROTKB|F1ST12 - symbol:CHD3 "Uncharacterized protein" ... 145 4.2e-16 2
UNIPROTKB|F1LPP7 - symbol:Chd3 "Protein Chd3" species:101... 145 4.3e-16 2
UNIPROTKB|E9PG89 - symbol:CHD3 "Chromodomain-helicase-DNA... 145 4.3e-16 3
UNIPROTKB|F1M7Q0 - symbol:Chd3 "Protein Chd3" species:101... 145 4.4e-16 2
TAIR|locus:2041644 - symbol:CHR5 "chromatin remodeling 5"... 154 5.6e-16 2
FB|FBgn0023395 - symbol:Chd3 "Chd3" species:7227 "Drosoph... 147 7.5e-16 2
SGD|S000002742 - symbol:SWR1 "Swi2/Snf2-related ATPase st... 157 1.2e-15 2
ZFIN|ZDB-GENE-041014-72 - symbol:ino80 "INO80 homolog (S.... 152 1.4e-15 2
TAIR|locus:2150270 - symbol:CHR23 "chromatin remodeling 2... 152 1.5e-15 2
UNIPROTKB|F1NH79 - symbol:CHD4 "Uncharacterized protein" ... 144 1.7e-15 2
UNIPROTKB|F5GWX5 - symbol:CHD4 "Chromodomain-helicase-DNA... 144 1.7e-15 2
UNIPROTKB|E2RHA0 - symbol:CHD4 "Uncharacterized protein" ... 144 1.7e-15 2
UNIPROTKB|Q14839 - symbol:CHD4 "Chromodomain-helicase-DNA... 144 1.7e-15 2
UNIPROTKB|F1SLR5 - symbol:CHD4 "Uncharacterized protein" ... 144 1.7e-15 2
MGI|MGI:1344380 - symbol:Chd4 "chromodomain helicase DNA ... 144 1.7e-15 2
UNIPROTKB|E9PU01 - symbol:Chd4 "Protein Chd4" species:101... 144 1.7e-15 2
UNIPROTKB|J9NW81 - symbol:CHD4 "Uncharacterized protein" ... 144 1.7e-15 2
UNIPROTKB|F1N3F6 - symbol:CHD4 "Uncharacterized protein" ... 144 1.7e-15 2
UNIPROTKB|F1LM59 - symbol:Chd4 "Protein Chd4" species:101... 144 1.7e-15 2
UNIPROTKB|Q9ULG1 - symbol:INO80 "DNA helicase INO80" spec... 148 2.1e-15 2
ZFIN|ZDB-GENE-040426-892 - symbol:chd1l "chromodomain hel... 140 2.3e-15 2
SGD|S000003118 - symbol:INO80 "ATPase and nucleosome spac... 155 2.4e-15 3
RGD|1310969 - symbol:Ino80 "INO80 homolog (S. cerevisiae)... 147 2.8e-15 2
ZFIN|ZDB-GENE-041111-187 - symbol:chd4a "chromodomain hel... 144 3.2e-15 3
MGI|MGI:1915392 - symbol:Ino80 "INO80 homolog (S. cerevis... 148 3.4e-15 2
UNIPROTKB|K7EMY3 - symbol:CHD5 "Chromodomain-helicase-DNA... 138 3.5e-15 2
DICTYBASE|DDB_G0292948 - symbol:isw "CHR group protein" s... 146 3.7e-15 2
UNIPROTKB|E2QW28 - symbol:HELLS "Uncharacterized protein"... 203 3.8e-15 1
UNIPROTKB|F1NS62 - symbol:CHD1L "Uncharacterized protein"... 150 3.9e-15 2
RGD|1309820 - symbol:Hells "helicase, lymphoid specific" ... 199 4.1e-15 1
SGD|S000000449 - symbol:ISW1 "ATPase subunit of imitation... 132 4.7e-15 2
UNIPROTKB|J9NRN3 - symbol:CHD5 "Uncharacterized protein" ... 138 4.7e-15 3
UNIPROTKB|F2Z2R5 - symbol:CHD5 "Chromodomain-helicase-DNA... 138 5.2e-15 3
UNIPROTKB|F1PKX5 - symbol:INO80 "Uncharacterized protein"... 148 6.7e-15 3
DICTYBASE|DDB_G0280705 - symbol:DDB_G0280705 "CHR group p... 152 7.1e-15 2
UNIPROTKB|F1NYY9 - symbol:INO80 "Uncharacterized protein"... 152 7.4e-15 2
ZFIN|ZDB-GENE-030131-4532 - symbol:chd4b "chromodomain he... 144 7.4e-15 2
UNIPROTKB|I3LDG1 - symbol:LOC100738357 "Uncharacterized p... 129 8.2e-15 2
SGD|S000001934 - symbol:IRC5 "Putative ATPase containing ... 200 8.2e-15 1
RGD|2323132 - symbol:LOC100359912 "SWI/SNF-related matrix... 141 8.5e-15 2
UNIPROTKB|F1NH78 - symbol:F1NH78 "Uncharacterized protein... 138 8.8e-15 3
UNIPROTKB|F1SSV0 - symbol:INO80 "Uncharacterized protein"... 148 8.8e-15 2
UNIPROTKB|E1BAN8 - symbol:INO80 "Uncharacterized protein"... 148 8.8e-15 2
UNIPROTKB|E1BCV0 - symbol:HELLS "Uncharacterized protein"... 199 9.9e-15 1
UNIPROTKB|F1SC64 - symbol:HELLS "Uncharacterized protein"... 199 1.0e-14 1
CGD|CAL0005422 - symbol:ISW2 species:5476 "Candida albica... 130 1.1e-14 2
UNIPROTKB|Q5A310 - symbol:ISW2 "Putative uncharacterized ... 130 1.1e-14 2
ZFIN|ZDB-GENE-070705-296 - symbol:si:dkey-148b12.1 "si:dk... 145 1.2e-14 3
UNIPROTKB|F1MFF9 - symbol:Bt.62145 "Uncharacterized prote... 138 1.3e-14 3
UNIPROTKB|F1SSZ2 - symbol:CHD5 "Uncharacterized protein" ... 138 1.4e-14 3
RGD|1582725 - symbol:Chd5 "chromodomain helicase DNA bind... 138 1.5e-14 3
UNIPROTKB|F1RIM3 - symbol:CHD5 "Uncharacterized protein" ... 138 1.6e-14 3
UNIPROTKB|F1S594 - symbol:LOC100622433 "Uncharacterized p... 136 1.7e-14 2
DICTYBASE|DDB_G0271052 - symbol:snf2b "SNF2-related prote... 144 1.7e-14 2
WARNING: Descriptions of 235 database sequences were not reported due to the
limiting value of parameter V = 100.
>FB|FBgn0032157 [details] [associations]
symbol:Etl1 "Etl1 homologue" species:7227 "Drosophila
melanogaster" [GO:0004003 "ATP-dependent DNA helicase activity"
evidence=ISS] [GO:0003677 "DNA binding" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0005634 EMBL:AE014134 GO:GO:0003677
GO:GO:0006281 GO:GO:0016568 GO:GO:0004386 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 KO:K14439
GeneTree:ENSGT00630000089890 OMA:KEERYMA EMBL:AY060597
RefSeq:NP_001033889.1 RefSeq:NP_001033890.1 RefSeq:NP_609320.2
UniGene:Dm.3953 ProteinModelPortal:Q9VL72 SMR:Q9VL72 IntAct:Q9VL72
STRING:Q9VL72 PRIDE:Q9VL72 EnsemblMetazoa:FBtr0079901 GeneID:34311
KEGG:dme:Dmel_CG5899 UCSC:CG5899-RA FlyBase:FBgn0032157
InParanoid:Q9VL72 PhylomeDB:Q9VL72 GenomeRNAi:34311 NextBio:787873
Bgee:Q9VL72 Uniprot:Q9VL72
Length = 844
Score = 452 (164.2 bits), Expect = 2.5e-43, Sum P(2) = 2.5e-43
Identities = 96/217 (44%), Positives = 140/217 (64%)
Query: 17 EQATFEVEQVDQAKRIISPFMLRRLKKDVLTELPKKTALVIKVPMIPSQAEKYRGLMEDF 76
E + F+ Q+ +AKRI+ PF+LRRLKKDVL LPKK +LV KVPM Q Y L++ +
Sbjct: 496 EVSQFQETQIQRAKRIMKPFVLRRLKKDVLKNLPKKLSLVEKVPMSSQQKIYYHELVDYY 555
Query: 77 KKTANPEGSNRSNEISHMSMFMMLRKMANHPLGLRYYFQENTLREIADCLVEDPTYKGTN 136
S S+E + +++ M +R++ANHPL +R+YF + LR + L ++K TN
Sbjct: 556 SNNKGEVCS--SSERAGIAIMMEMRRIANHPLLMRHYFTDANLRGFSKRLANASSFKKTN 613
Query: 137 PQYILEDISWLSDYDIHQLSLKHKTLDCAKYKVPDDLVVESGKLKKLDEILPDLKKNGHR 196
QYI E+++ +SD+ ++Q+ KH+ D K+PD+L+ +SGK LD +LP LK GHR
Sbjct: 614 EQYIFEELAVMSDFQVYQMMNKHEFYDV---KIPDNLICDSGKFLYLDTLLPKLKAEGHR 670
Query: 197 VLIFSQFIFVLDILGHYMDIRGWRHLRLDGATQVSSR 233
VL+FSQF +LDI+ Y+ IR + RLDGAT V+ R
Sbjct: 671 VLLFSQFTMMLDIVEEYLRIRKFGFCRLDGATAVNVR 707
Score = 38 (18.4 bits), Expect = 2.5e-43, Sum P(2) = 2.5e-43
Identities = 14/36 (38%), Positives = 20/36 (55%)
Query: 2 DSDSE-DDARYEDKRKEQATF-EVEQVDQAKRIISP 35
DSDS+ +D++ K K + T E E+ A ISP
Sbjct: 58 DSDSDGNDSQTPKKTKLELTVKEKEERYMAAAKISP 93
>UNIPROTKB|Q5FWR0 [details] [associations]
symbol:smarcad1 "SWI/SNF-related matrix-associated
actin-dependent regulator of chromatin subfamily A containing
DEAD/H box 1" species:8364 "Xenopus (Silurana) tropicalis"
[GO:0000729 "DNA double-strand break processing" evidence=ISS]
[GO:0035861 "site of double-strand break" evidence=ISS] [GO:0043044
"ATP-dependent chromatin remodeling" evidence=ISS]
InterPro:IPR000330 InterPro:IPR001650 InterPro:IPR003892
InterPro:IPR009060 Pfam:PF00176 Pfam:PF00271 PROSITE:PS51140
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
GO:GO:0003677 GO:GO:0004386 eggNOG:COG0553 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0043044 SUPFAM:SSF46934
GO:GO:0000729 HOGENOM:HOG000172362 GO:GO:0035861 KO:K14439
HOVERGEN:HBG055804 OrthoDB:EOG4RV2QW EMBL:AAMC01061573
EMBL:AAMC01061574 EMBL:AAMC01061575 EMBL:BC089242
RefSeq:NP_001015697.1 UniGene:Str.34312 ProteinModelPortal:Q5FWR0
GeneID:548414 KEGG:xtr:548414 Xenbase:XB-GENE-492700
InParanoid:Q5FWR0 Uniprot:Q5FWR0
Length = 1003
Score = 402 (146.6 bits), Expect = 2.6e-36, P = 2.6e-36
Identities = 87/234 (37%), Positives = 145/234 (61%)
Query: 3 SDSEDDARYEDKRK---EQATFEVEQVDQAKRIISPFMLRRLKKDVLTELPKKTALVIKV 59
S SE + K K EQ FE E++ AK+I+ PF+LRR+K +VL +LP K +
Sbjct: 659 STSEIKRLFSSKAKSTDEQTIFEKERIAHAKQIMKPFILRRVKSEVLKQLPPKQDKIKFC 718
Query: 60 PMIPSQAEKYRGLMEDFKKTANPEGSNRSNEISHMSMFMMLRKMANHPLGLRYYFQENTL 119
M Q + Y L+ KK+ + + +++E+ ++ M LRKMANHPL R Y+ + L
Sbjct: 719 QMSKKQEQLYSDLLNKLKKSI--DATEKNSELCNVMMH--LRKMANHPLLHRQYYTADRL 774
Query: 120 REIADCLVEDPTYKGTNPQYILEDISWLSDYDIHQLSLKHKTLDCAKYKVPDDLVVESGK 179
R ++ ++++PT+ NP I ED+ ++D+++H+L + TL ++YK+ +L+++SGK
Sbjct: 775 RTMSKLMLKEPTHCDANPDLIFEDMEVMTDFELHRLCNEFTTL--SQYKLEKELILDSGK 832
Query: 180 LKKLDEILPDLKKNGHRVLIFSQFIFVLDILGHYMDIRGWRHLRLDGATQVSSR 233
L+++L D+KK G RV++FSQF +LDI+ ++ R++RLDG TQ+S R
Sbjct: 833 FNILEKLLSDIKKKGDRVVLFSQFTMMLDIIEVFLRHHQHRYVRLDGKTQISER 886
>UNIPROTKB|F1NAD2 [details] [associations]
symbol:SMARCAD1 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0000018 "regulation of
DNA recombination" evidence=IEA] [GO:0000729 "DNA double-strand
break processing" evidence=IEA] [GO:0000792 "heterochromatin"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0035861
"site of double-strand break" evidence=IEA] [GO:0043044
"ATP-dependent chromatin remodeling" evidence=IEA] [GO:0043596
"nuclear replication fork" evidence=IEA] [GO:0051304 "chromosome
separation" evidence=IEA] [GO:0070932 "histone H3 deacetylation"
evidence=IEA] [GO:0070933 "histone H4 deacetylation" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001650 InterPro:IPR003892
InterPro:IPR009060 Pfam:PF00176 Pfam:PF00271 PROSITE:PS51140
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003677
GO:GO:0043596 GO:GO:0004386 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 SUPFAM:SSF46934 GO:GO:0000792 GO:GO:0070932
GO:GO:0070933 GO:GO:0000018 GeneTree:ENSGT00630000089890
GO:GO:0051304 OMA:KNQRGIQ EMBL:AADN02016061 EMBL:AADN02016062
EMBL:AADN02016063 EMBL:AADN02016064 EMBL:AADN02016065
EMBL:AADN02016066 EMBL:AADN02016067 IPI:IPI00583150
Ensembl:ENSGALT00000016936 Uniprot:F1NAD2
Length = 963
Score = 401 (146.2 bits), Expect = 3.0e-36, P = 3.0e-36
Identities = 88/236 (37%), Positives = 148/236 (62%)
Query: 3 SDSEDDARYEDKRK---EQATFEVEQVDQAKRIISPFMLRRLKKDVLTELPKKTALVIKV 59
S SE + K K EQ+T+E E++ AK+II PF+LRR+K +VL +LP K +
Sbjct: 619 STSEIRRMFSSKAKTAEEQSTYEKERIAHAKQIIKPFILRRVKDEVLKQLPPKKDHIELC 678
Query: 60 PMIPSQAEKYRGLMEDFKKTANPEGSNRSNEISHMSMFMMLRKMANHPLGLRYYFQENTL 119
M Q + Y L+ KKT +G+ +++++ + M LRKMANHPL R+Y+ + L
Sbjct: 679 AMSEKQEQLYCDLLNKLKKTM--KGNEKNSDMGNA--MMQLRKMANHPLLHRHYYTADKL 734
Query: 120 REIADCLVEDPTYKGTNPQYILEDISWLSDYDIHQLSLKHKTLDCAKYKVPDDLVVESGK 179
+ ++ ++++PT+ NP I ED++ ++D+++H L ++ + + +K+ D +++SGK
Sbjct: 735 KTMSKLMLKEPTHCDANPDLIFEDMTVMTDFELHLLCKQYSHV--SDFKLDMDQILDSGK 792
Query: 180 LKKLDEILPDLKKNGHRVLIFSQFIFVLDILGHYMDIRGWRH--LRLDGATQVSSR 233
+ L+ +L DLK+ G RV++FSQF VLDIL ++ + W+H +RLDG TQ+S R
Sbjct: 793 FRVLERLLSDLKEKGDRVVLFSQFTMVLDILEVFL--KHWQHRYIRLDGKTQISDR 846
>UNIPROTKB|E2RG62 [details] [associations]
symbol:SMARCAD1 "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0070933 "histone H4 deacetylation"
evidence=IEA] [GO:0070932 "histone H3 deacetylation" evidence=IEA]
[GO:0051304 "chromosome separation" evidence=IEA] [GO:0043596
"nuclear replication fork" evidence=IEA] [GO:0043044 "ATP-dependent
chromatin remodeling" evidence=IEA] [GO:0035861 "site of
double-strand break" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0000792 "heterochromatin" evidence=IEA]
[GO:0000729 "DNA double-strand break processing" evidence=IEA]
[GO:0000018 "regulation of DNA recombination" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR003892 InterPro:IPR009060 Pfam:PF00176 Pfam:PF00271
PROSITE:PS51140 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003677 GO:GO:0043596 GO:GO:0004386 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 SUPFAM:SSF46934 GO:GO:0000792
GO:GO:0070932 GO:GO:0070933 GO:GO:0000018
GeneTree:ENSGT00630000089890 GO:GO:0051304 EMBL:AAEX03016768
EMBL:AAEX03016769 Ensembl:ENSCAFT00000015951 Uniprot:E2RG62
Length = 1026
Score = 395 (144.1 bits), Expect = 1.5e-35, P = 1.5e-35
Identities = 89/234 (38%), Positives = 142/234 (60%)
Query: 3 SDSEDDARYEDKRK---EQATFEVEQVDQAKRIISPFMLRRLKKDVLTELPKKTALVIKV 59
S SE + K K EQ+ +E E++ AK+II PF+LRR+K++VL +LP K +
Sbjct: 682 STSEIRRMFSSKTKSADEQSIYEKERIAHAKQIIKPFILRRVKEEVLKQLPPKKDQIELC 741
Query: 60 PMIPSQAEKYRGLMEDFKKTANPEGSNRSNEISHMSMFMMLRKMANHPLGLRYYFQENTL 119
M Q + Y GL KK+ N +S E+ ++ M LRKMANHPL R Y+ L
Sbjct: 742 AMSEKQEQLYLGLFNRLKKSIN--NIEKSTEMCNV--MMQLRKMANHPLLHRQYYTAEKL 797
Query: 120 REIADCLVEDPTYKGTNPQYILEDISWLSDYDIHQLSLKHKTLDCAKYKVPDDLVVESGK 179
+E++ ++++PT+ NP I ED+ ++D+++H L +++ ++ +++ DL+++SGK
Sbjct: 798 KEMSQLMLKEPTHCEANPDLIFEDMEVMTDFELHVLCKQYRHIN--NFQLDMDLILDSGK 855
Query: 180 LKKLDEILPDLKKNGHRVLIFSQFIFVLDILGHYMDIRGWRHLRLDGATQVSSR 233
+ L IL +LK+ G RV++FSQF +LDIL + R+LRLDG TQ+S R
Sbjct: 856 FRVLGCILSELKQKGDRVVLFSQFTMMLDILEVLLKHHQHRYLRLDGKTQISER 909
>UNIPROTKB|J9NX47 [details] [associations]
symbol:SMARCAD1 "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR003892 InterPro:IPR009060 Pfam:PF00176 Pfam:PF00271
PROSITE:PS51140 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003677 GO:GO:0004386 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 SUPFAM:SSF46934 GeneTree:ENSGT00630000089890
EMBL:AAEX03016768 EMBL:AAEX03016769 Ensembl:ENSCAFT00000044961
Uniprot:J9NX47
Length = 1026
Score = 395 (144.1 bits), Expect = 1.5e-35, P = 1.5e-35
Identities = 89/234 (38%), Positives = 142/234 (60%)
Query: 3 SDSEDDARYEDKRK---EQATFEVEQVDQAKRIISPFMLRRLKKDVLTELPKKTALVIKV 59
S SE + K K EQ+ +E E++ AK+II PF+LRR+K++VL +LP K +
Sbjct: 682 STSEIRRMFSSKTKSADEQSIYEKERIAHAKQIIKPFILRRVKEEVLKQLPPKKDQIELC 741
Query: 60 PMIPSQAEKYRGLMEDFKKTANPEGSNRSNEISHMSMFMMLRKMANHPLGLRYYFQENTL 119
M Q + Y GL KK+ N +S E+ ++ M LRKMANHPL R Y+ L
Sbjct: 742 AMSEKQEQLYLGLFNRLKKSIN--NIEKSTEMCNV--MMQLRKMANHPLLHRQYYTAEKL 797
Query: 120 REIADCLVEDPTYKGTNPQYILEDISWLSDYDIHQLSLKHKTLDCAKYKVPDDLVVESGK 179
+E++ ++++PT+ NP I ED+ ++D+++H L +++ ++ +++ DL+++SGK
Sbjct: 798 KEMSQLMLKEPTHCEANPDLIFEDMEVMTDFELHVLCKQYRHIN--NFQLDMDLILDSGK 855
Query: 180 LKKLDEILPDLKKNGHRVLIFSQFIFVLDILGHYMDIRGWRHLRLDGATQVSSR 233
+ L IL +LK+ G RV++FSQF +LDIL + R+LRLDG TQ+S R
Sbjct: 856 FRVLGCILSELKQKGDRVVLFSQFTMMLDILEVLLKHHQHRYLRLDGKTQISER 909
>UNIPROTKB|J9PA79 [details] [associations]
symbol:SMARCAD1 "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR003892 InterPro:IPR009060 Pfam:PF00176 Pfam:PF00271
PROSITE:PS51140 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003677 GO:GO:0004386 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 SUPFAM:SSF46934 GeneTree:ENSGT00630000089890
OMA:KNQRGIQ EMBL:AAEX03016768 EMBL:AAEX03016769
Ensembl:ENSCAFT00000043847 Uniprot:J9PA79
Length = 1026
Score = 395 (144.1 bits), Expect = 1.5e-35, P = 1.5e-35
Identities = 89/234 (38%), Positives = 142/234 (60%)
Query: 3 SDSEDDARYEDKRK---EQATFEVEQVDQAKRIISPFMLRRLKKDVLTELPKKTALVIKV 59
S SE + K K EQ+ +E E++ AK+II PF+LRR+K++VL +LP K +
Sbjct: 682 STSEIRRMFSSKTKSADEQSIYEKERIAHAKQIIKPFILRRVKEEVLKQLPPKKDQIELC 741
Query: 60 PMIPSQAEKYRGLMEDFKKTANPEGSNRSNEISHMSMFMMLRKMANHPLGLRYYFQENTL 119
M Q + Y GL KK+ N +S E+ ++ M LRKMANHPL R Y+ L
Sbjct: 742 AMSEKQEQLYLGLFNRLKKSIN--NIEKSTEMCNV--MMQLRKMANHPLLHRQYYTAEKL 797
Query: 120 REIADCLVEDPTYKGTNPQYILEDISWLSDYDIHQLSLKHKTLDCAKYKVPDDLVVESGK 179
+E++ ++++PT+ NP I ED+ ++D+++H L +++ ++ +++ DL+++SGK
Sbjct: 798 KEMSQLMLKEPTHCEANPDLIFEDMEVMTDFELHVLCKQYRHIN--NFQLDMDLILDSGK 855
Query: 180 LKKLDEILPDLKKNGHRVLIFSQFIFVLDILGHYMDIRGWRHLRLDGATQVSSR 233
+ L IL +LK+ G RV++FSQF +LDIL + R+LRLDG TQ+S R
Sbjct: 856 FRVLGCILSELKQKGDRVVLFSQFTMMLDILEVLLKHHQHRYLRLDGKTQISER 909
>UNIPROTKB|F1RWW3 [details] [associations]
symbol:SMARCAD1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0070933 "histone H4 deacetylation" evidence=IEA]
[GO:0070932 "histone H3 deacetylation" evidence=IEA] [GO:0051304
"chromosome separation" evidence=IEA] [GO:0043596 "nuclear
replication fork" evidence=IEA] [GO:0043044 "ATP-dependent
chromatin remodeling" evidence=IEA] [GO:0035861 "site of
double-strand break" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0000792 "heterochromatin" evidence=IEA]
[GO:0000729 "DNA double-strand break processing" evidence=IEA]
[GO:0000018 "regulation of DNA recombination" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR003892 InterPro:IPR009060 Pfam:PF00176 Pfam:PF00271
PROSITE:PS51140 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003677 GO:GO:0043596 GO:GO:0004386 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 SUPFAM:SSF46934 GO:GO:0000792
GO:GO:0070932 GO:GO:0070933 GO:GO:0000018
GeneTree:ENSGT00630000089890 GO:GO:0051304 OMA:KNQRGIQ
EMBL:CU951443 Ensembl:ENSSSCT00000010066 Uniprot:F1RWW3
Length = 1029
Score = 394 (143.8 bits), Expect = 1.9e-35, P = 1.9e-35
Identities = 88/234 (37%), Positives = 139/234 (59%)
Query: 3 SDSEDDARYEDKRK---EQATFEVEQVDQAKRIISPFMLRRLKKDVLTELPKKTALVIKV 59
S SE + K K EQ+ +E E++ AK+II PF+LRR+K++VL +LP K +
Sbjct: 685 STSEIRRMFSSKTKSADEQSIYEKERIAHAKQIIKPFILRRVKEEVLKQLPPKKDQIELC 744
Query: 60 PMIPSQAEKYRGLMEDFKKTANPEGSNRSNEISHMSMFMMLRKMANHPLGLRYYFQENTL 119
M Q + Y GL KK+ N N ++ M LRKMANHPL R Y+ L
Sbjct: 745 AMSEKQEQLYLGLFNRLKKSIN----NMEKNTEMCNVMMQLRKMANHPLLHRQYYTAEKL 800
Query: 120 REIADCLVEDPTYKGTNPQYILEDISWLSDYDIHQLSLKHKTLDCAKYKVPDDLVVESGK 179
+E++ ++++PT+ NP I ED+ ++D+++H L +++ ++ +++ DL+++SGK
Sbjct: 801 KEMSQLMLKEPTHCEANPDLIFEDMEVMTDFELHVLCKQYRHIN--NFQLDMDLILDSGK 858
Query: 180 LKKLDEILPDLKKNGHRVLIFSQFIFVLDILGHYMDIRGWRHLRLDGATQVSSR 233
+ L IL +LK+ G RV++FSQF +LDIL + R+LRLDG TQ+S R
Sbjct: 859 FRVLGCILSELKQKGDRVVLFSQFTMMLDILEVLLKHHQHRYLRLDGKTQISER 912
>MGI|MGI:95453 [details] [associations]
symbol:Smarcad1 "SWI/SNF-related, matrix-associated
actin-dependent regulator of chromatin, subfamily a, containing
DEAD/H box 1" species:10090 "Mus musculus" [GO:0000018 "regulation
of DNA recombination" evidence=ISS] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0000729 "DNA double-strand break
processing" evidence=ISO] [GO:0000792 "heterochromatin"
evidence=IDA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=ISO] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005694 "chromosome"
evidence=IEA] [GO:0006281 "DNA repair" evidence=IEA] [GO:0006974
"response to DNA damage stimulus" evidence=IEA] [GO:0016568
"chromatin modification" evidence=IEA] [GO:0016787 "hydrolase
activity" evidence=IEA] [GO:0035861 "site of double-strand break"
evidence=ISO] [GO:0043044 "ATP-dependent chromatin remodeling"
evidence=ISO] [GO:0043596 "nuclear replication fork" evidence=ISO]
[GO:0051304 "chromosome separation" evidence=ISO] [GO:0070932
"histone H3 deacetylation" evidence=ISO] [GO:0070933 "histone H4
deacetylation" evidence=ISO] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR003892 Pfam:PF00176 Pfam:PF00271 PROSITE:PS51140
PROSITE:PS51194 SMART:SM00490 MGI:MGI:95453 GO:GO:0005524
GO:GO:0005634 GO:GO:0003677 GO:GO:0043596 GO:GO:0004386
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0043044 GO:GO:0000792 GO:GO:0070932 GO:GO:0070933
GO:GO:0000729 GO:GO:0000018 HOGENOM:HOG000172362 GO:GO:0035861
KO:K14439 GeneTree:ENSGT00630000089890 GO:GO:0051304 OMA:KNQRGIQ
CTD:56916 HOVERGEN:HBG055804 EMBL:X69942 EMBL:AK122454
EMBL:BC042442 EMBL:AK134442 EMBL:AK147884 IPI:IPI00223926
IPI:IPI00556837 PIR:A56559 RefSeq:NP_001240321.1 RefSeq:NP_031984.1
UniGene:Mm.99113 ProteinModelPortal:Q04692 SMR:Q04692 STRING:Q04692
PhosphoSite:Q04692 PaxDb:Q04692 PRIDE:Q04692
Ensembl:ENSMUST00000031984 GeneID:13990 KEGG:mmu:13990
UCSC:uc009ced.1 UCSC:uc012emw.1 InParanoid:Q04692 OrthoDB:EOG4RV2QW
NextBio:284868 Bgee:Q04692 Genevestigator:Q04692
GermOnline:ENSMUSG00000029920 Uniprot:Q04692
Length = 1021
Score = 393 (143.4 bits), Expect = 2.4e-35, P = 2.4e-35
Identities = 89/234 (38%), Positives = 138/234 (58%)
Query: 3 SDSEDDARYEDKRK---EQATFEVEQVDQAKRIISPFMLRRLKKDVLTELPKKTALVIKV 59
S SE + K K EQ+ +E E++ AK+II PF+LRR+K++VL LP K +
Sbjct: 677 STSEIRRMFSSKTKPADEQSIYEKERIAHAKQIIKPFILRRVKEEVLKLLPPKKDRIELC 736
Query: 60 PMIPSQAEKYRGLMEDFKKTANPEGSNRSNEISHMSMFMMLRKMANHPLGLRYYFQENTL 119
M Q + Y GL KK+ N N ++ M LRKMANHPL R Y+ L
Sbjct: 737 AMSEKQEQLYSGLFNRLKKSIN----NLEKNTEMCNVMMQLRKMANHPLLHRQYYTPEKL 792
Query: 120 REIADCLVEDPTYKGTNPQYILEDISWLSDYDIHQLSLKHKTLDCAKYKVPDDLVVESGK 179
+E++ ++++PT+ NP I ED+ ++D+++H L +++ ++ Y++ DL+++SGK
Sbjct: 793 KEMSQLMLKEPTHCEANPDLIFEDMEVMTDFELHVLCKQYQHIN--SYQLDMDLILDSGK 850
Query: 180 LKKLDEILPDLKKNGHRVLIFSQFIFVLDILGHYMDIRGWRHLRLDGATQVSSR 233
+ L IL +LK+ G RV++FSQF +LDIL + R+LRLDG TQ+S R
Sbjct: 851 FRALGCILSELKQKGDRVVLFSQFTMMLDILEVLLKHHQHRYLRLDGKTQISER 904
>RGD|1309640 [details] [associations]
symbol:Smarcad1 "SWI/SNF-related, matrix-associated
actin-dependent regulator of chromatin, subfamily a, containing
DEAD/H box 1`" species:10116 "Rattus norvegicus" [GO:0000018
"regulation of DNA recombination" evidence=IEA;ISO] [GO:0000729
"DNA double-strand break processing" evidence=ISO;ISS] [GO:0000792
"heterochromatin" evidence=ISO;ISS] [GO:0003677 "DNA binding"
evidence=IEA;ISO] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISO;ISS] [GO:0035861 "site of double-strand break"
evidence=ISO;ISS] [GO:0043044 "ATP-dependent chromatin remodeling"
evidence=ISO;ISS] [GO:0043596 "nuclear replication fork"
evidence=IEA;ISO] [GO:0051304 "chromosome separation"
evidence=ISO;ISS] [GO:0070932 "histone H3 deacetylation"
evidence=ISO;ISS] [GO:0070933 "histone H4 deacetylation"
evidence=ISO;ISS] [GO:0005730 "nucleolus" evidence=ISO]
InterPro:IPR000330 InterPro:IPR001650 InterPro:IPR003892
Pfam:PF00176 Pfam:PF00271 PROSITE:PS51140 PROSITE:PS51194
SMART:SM00490 RGD:1309640 GO:GO:0005524 GO:GO:0005634 GO:GO:0003677
GO:GO:0043596 GO:GO:0004386 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0043044 GO:GO:0000792 GO:GO:0070932
GO:GO:0070933 GO:GO:0000729 GO:GO:0000018 GO:GO:0035861 KO:K14439
GeneTree:ENSGT00630000089890 GO:GO:0051304 OMA:KNQRGIQ CTD:56916
OrthoDB:EOG4RV2QW EMBL:AABR03032021 IPI:IPI00765483
RefSeq:NP_001101334.2 UniGene:Rn.7758 ProteinModelPortal:D3Z9Z9
Ensembl:ENSRNOT00000008585 GeneID:312398 KEGG:rno:312398
UCSC:RGD:1309640 Uniprot:D3Z9Z9
Length = 1024
Score = 393 (143.4 bits), Expect = 2.5e-35, P = 2.5e-35
Identities = 89/234 (38%), Positives = 138/234 (58%)
Query: 3 SDSEDDARYEDKRK---EQATFEVEQVDQAKRIISPFMLRRLKKDVLTELPKKTALVIKV 59
S SE + K K EQ+ +E E++ AK+II PF+LRR+K++VL LP K +
Sbjct: 680 STSEIRRMFSSKTKPADEQSIYEKERIAHAKQIIKPFILRRVKEEVLKLLPPKKDQIELC 739
Query: 60 PMIPSQAEKYRGLMEDFKKTANPEGSNRSNEISHMSMFMMLRKMANHPLGLRYYFQENTL 119
M Q + Y GL KK+ N N ++ M LRKMANHPL R Y+ L
Sbjct: 740 AMSEKQEQLYSGLFNRLKKSIN----NLEKNTEMCNVMMQLRKMANHPLLHRQYYTAEKL 795
Query: 120 REIADCLVEDPTYKGTNPQYILEDISWLSDYDIHQLSLKHKTLDCAKYKVPDDLVVESGK 179
+E++ ++++PT+ NP I ED+ ++D+++H L +++ ++ Y++ DL+++SGK
Sbjct: 796 KEMSQLMLKEPTHCEANPDLIFEDMEVMTDFELHVLCKQYQHIN--SYQLDMDLILDSGK 853
Query: 180 LKKLDEILPDLKKNGHRVLIFSQFIFVLDILGHYMDIRGWRHLRLDGATQVSSR 233
+ L IL +LK+ G RV++FSQF +LDIL + R+LRLDG TQ+S R
Sbjct: 854 FRTLGCILSELKQKGDRVVLFSQFTMMLDILEVLLKHHQHRYLRLDGKTQISER 907
>UNIPROTKB|Q9H4L7 [details] [associations]
symbol:SMARCAD1 "SWI/SNF-related matrix-associated
actin-dependent regulator of chromatin subfamily A containing
DEAD/H box 1" species:9606 "Homo sapiens" [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0009117 "nucleotide metabolic process" evidence=NAS]
[GO:0003676 "nucleic acid binding" evidence=NAS] [GO:0016363
"nuclear matrix" evidence=NAS] [GO:0051260 "protein
homooligomerization" evidence=NAS] [GO:0000018 "regulation of DNA
recombination" evidence=IEP] [GO:0045893 "positive regulation of
transcription, DNA-dependent" evidence=NAS] [GO:0016568 "chromatin
modification" evidence=NAS] [GO:0005515 "protein binding"
evidence=IPI] [GO:0003677 "DNA binding" evidence=IDA] [GO:0000729
"DNA double-strand break processing" evidence=IMP] [GO:0043044
"ATP-dependent chromatin remodeling" evidence=IMP] [GO:0035861
"site of double-strand break" evidence=IDA] [GO:0043596 "nuclear
replication fork" evidence=IDA] [GO:0006338 "chromatin remodeling"
evidence=NAS] [GO:0051304 "chromosome separation" evidence=IMP]
[GO:0070932 "histone H3 deacetylation" evidence=IMP] [GO:0070933
"histone H4 deacetylation" evidence=IMP] [GO:0000792
"heterochromatin" evidence=ISS] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005730 "nucleolus" evidence=IDA] InterPro:IPR000330
InterPro:IPR001650 InterPro:IPR003892 InterPro:IPR009060
Pfam:PF00176 Pfam:PF00271 PROSITE:PS51140 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0045893 GO:GO:0003677
GO:GO:0009117 GO:GO:0051260 GO:GO:0043596 GO:GO:0004386
GO:GO:0016363 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0043044 SUPFAM:SSF46934 GO:GO:0000792
GO:GO:0070932 GO:GO:0070933 GO:GO:0000729 GO:GO:0000018
HOGENOM:HOG000172362 GO:GO:0035861 KO:K14439 GO:GO:0051304
OMA:KNQRGIQ EMBL:AY008271 EMBL:AB032948 EMBL:AK023990 EMBL:AK027490
EMBL:AK301668 EMBL:AC096746 EMBL:BC017953 EMBL:BC045534
EMBL:AL359929 EMBL:AL512768 IPI:IPI00008422 IPI:IPI00220119
RefSeq:NP_001121901.1 RefSeq:NP_001121902.1 RefSeq:NP_001241878.1
RefSeq:NP_064544.2 UniGene:Hs.410406 ProteinModelPortal:Q9H4L7
SMR:Q9H4L7 STRING:Q9H4L7 PhosphoSite:Q9H4L7 DMDM:306526240
PaxDb:Q9H4L7 PRIDE:Q9H4L7 DNASU:56916 Ensembl:ENST00000354268
Ensembl:ENST00000359052 Ensembl:ENST00000457823
Ensembl:ENST00000509418 GeneID:56916 KEGG:hsa:56916 UCSC:uc003htb.4
UCSC:uc003htc.4 CTD:56916 GeneCards:GC04P095128 H-InvDB:HIX0004380
HGNC:HGNC:18398 HPA:HPA016737 MIM:136000 MIM:612761
neXtProt:NX_Q9H4L7 Orphanet:289465 PharmGKB:PA134954731
HOVERGEN:HBG055804 ChiTaRS:SMARCAD1 GenomeRNAi:56916 NextBio:62407
ArrayExpress:Q9H4L7 Bgee:Q9H4L7 CleanEx:HS_SMARCAD1
Genevestigator:Q9H4L7 GermOnline:ENSG00000163104 Uniprot:Q9H4L7
Length = 1026
Score = 393 (143.4 bits), Expect = 2.5e-35, P = 2.5e-35
Identities = 88/234 (37%), Positives = 139/234 (59%)
Query: 3 SDSEDDARYEDKRK---EQATFEVEQVDQAKRIISPFMLRRLKKDVLTELPKKTALVIKV 59
S SE + K K EQ+ +E E++ AK+II PF+LRR+K++VL +LP K +
Sbjct: 682 STSEIRRMFSSKTKSADEQSIYEKERIAHAKQIIKPFILRRVKEEVLKQLPPKKDRIELC 741
Query: 60 PMIPSQAEKYRGLMEDFKKTANPEGSNRSNEISHMSMFMMLRKMANHPLGLRYYFQENTL 119
M Q + Y GL KK+ N N ++ M LRKMANHPL R Y+ L
Sbjct: 742 AMSEKQEQLYLGLFNRLKKSIN----NLEKNTEMCNVMMQLRKMANHPLLHRQYYTAEKL 797
Query: 120 REIADCLVEDPTYKGTNPQYILEDISWLSDYDIHQLSLKHKTLDCAKYKVPDDLVVESGK 179
+E++ ++++PT+ NP I ED+ ++D+++H L +++ ++ +++ DL+++SGK
Sbjct: 798 KEMSQLMLKEPTHCEANPDLIFEDMEVMTDFELHVLCKQYRHIN--NFQLDMDLILDSGK 855
Query: 180 LKKLDEILPDLKKNGHRVLIFSQFIFVLDILGHYMDIRGWRHLRLDGATQVSSR 233
+ L IL +LK+ G RV++FSQF +LDIL + R+LRLDG TQ+S R
Sbjct: 856 FRVLGCILSELKQKGDRVVLFSQFTMMLDILEVLLKHHQHRYLRLDGKTQISER 909
>UNIPROTKB|E1B7X9 [details] [associations]
symbol:SMARCAD1 "SWI/SNF-related matrix-associated
actin-dependent regulator of chromatin subfamily A containing
DEAD/H box 1" species:9913 "Bos taurus" [GO:0035861 "site of
double-strand break" evidence=ISS] [GO:0043044 "ATP-dependent
chromatin remodeling" evidence=ISS] [GO:0000729 "DNA double-strand
break processing" evidence=ISS] [GO:0070933 "histone H4
deacetylation" evidence=ISS] [GO:0070932 "histone H3 deacetylation"
evidence=ISS] [GO:0005634 "nucleus" evidence=ISS] [GO:0000792
"heterochromatin" evidence=ISS] [GO:0051304 "chromosome separation"
evidence=ISS] [GO:0043596 "nuclear replication fork" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0000018 "regulation of
DNA recombination" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001650 InterPro:IPR003892
InterPro:IPR009060 Pfam:PF00176 Pfam:PF00271 PROSITE:PS51140
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
GO:GO:0003677 GO:GO:0043596 GO:GO:0004386 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0043044 SUPFAM:SSF46934
GO:GO:0000792 GO:GO:0070932 GO:GO:0070933 GO:GO:0000729
GO:GO:0000018 GO:GO:0035861 GeneTree:ENSGT00630000089890
GO:GO:0051304 EMBL:DAAA02016925 EMBL:DAAA02016926 IPI:IPI00826348
UniGene:Bt.77636 Ensembl:ENSBTAT00000047936 OMA:KNQRGIQ
Uniprot:E1B7X9
Length = 1028
Score = 389 (142.0 bits), Expect = 6.6e-35, P = 6.6e-35
Identities = 87/234 (37%), Positives = 138/234 (58%)
Query: 3 SDSEDDARYEDKRK---EQATFEVEQVDQAKRIISPFMLRRLKKDVLTELPKKTALVIKV 59
S SE + K K EQ+ +E E++ AK+II PF+LRR+K++VL +LP K +
Sbjct: 684 STSEIRRMFSSKTKPADEQSIYEKERIAHAKQIIKPFILRRVKEEVLKQLPPKKDRIELC 743
Query: 60 PMIPSQAEKYRGLMEDFKKTANPEGSNRSNEISHMSMFMMLRKMANHPLGLRYYFQENTL 119
M Q + Y L KK+ N N ++ M LRKMANHPL R Y+ L
Sbjct: 744 AMSEKQEQLYMNLFNRLKKSIN----NMEKNTEMCNVMMQLRKMANHPLLHRQYYTAEKL 799
Query: 120 REIADCLVEDPTYKGTNPQYILEDISWLSDYDIHQLSLKHKTLDCAKYKVPDDLVVESGK 179
+E++ ++++PT+ NP I ED+ ++D+++H L +++ ++ +++ DL+++SGK
Sbjct: 800 KEMSQLMLKEPTHCEANPDLIFEDMEVMTDFELHVLCKQYRHIN--NFQLDMDLILDSGK 857
Query: 180 LKKLDEILPDLKKNGHRVLIFSQFIFVLDILGHYMDIRGWRHLRLDGATQVSSR 233
+ L IL +LK+ G RV++FSQF +LDIL + R+LRLDG TQ+S R
Sbjct: 858 FRVLGCILSELKQKGDRVVLFSQFTMMLDILEVLLKHHQHRYLRLDGKTQISER 911
>POMBASE|SPCC1235.05c [details] [associations]
symbol:fft2 "fun thirty related protein Fft2
(predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0000790
"nuclear chromatin" evidence=NAS] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0004003 "ATP-dependent DNA helicase activity"
evidence=ISM;ISS] [GO:0005524 "ATP binding" evidence=ISM]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005829 "cytosol"
evidence=IDA] [GO:0006338 "chromatin remodeling" evidence=NAS]
[GO:0051276 "chromosome organization" evidence=ISS]
InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 PomBase:SPCC1235.05c GO:GO:0005829
GO:GO:0005524 EMBL:CU329672 GenomeReviews:CU329672_GR GO:GO:0003677
GO:GO:0006338 GO:GO:0000790 GO:GO:0004003 HSSP:Q97XQ5
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0016585 OrthoDB:EOG4BCHW4 PIR:T40879 RefSeq:NP_587731.1
ProteinModelPortal:O74842 STRING:O74842 EnsemblFungi:SPCC1235.05c.1
GeneID:2539045 KEGG:spo:SPCC1235.05c KO:K14439 NextBio:20800219
Uniprot:O74842
Length = 1284
Score = 370 (135.3 bits), Expect = 1.1e-32, P = 1.1e-32
Identities = 88/249 (35%), Positives = 141/249 (56%)
Query: 2 DSDSED-DARYEDKRK-----EQATFEVEQVDQAKRIISPFMLRRLKKDVLTELPKKTAL 55
DSD +D D ++ K EQA +++ +AK +++PF+LRR K VL +LPKKT +
Sbjct: 733 DSDMDDLDVIFKAKPTADADIEQALLSKQRISRAKTMMTPFVLRRRKNQVLNDLPKKTQI 792
Query: 56 VIKVPMIPSQAEKY---------RGLMEDFKKTANPEGSNRSN--EISHMSMFMMLRKMA 104
+ + +Q E Y + L D K+ + S+ +S + M LRK A
Sbjct: 793 IEHCKLSENQLEIYNRYAALQKNQQLRRDDKRNKRSKNDEESDGKSLSAGHVLMQLRKAA 852
Query: 105 NHPLGLRYYFQENTLREIADCLVEDPTYKGTNPQYILEDISWLSDYDIHQLSLKHKTLDC 164
NH L R ++ + L+++A ++++ YK N QYI ED+ +SD+++H+L TL
Sbjct: 853 NHALLFRKFYDDEKLKQMAKDIMQEEQYKNANEQYIYEDMEVMSDFELHRLCRSFPTLQ- 911
Query: 165 AKYKVPDDLVVESGKLKKLDEILPDLKKNGHRVLIFSQFIFVLDILGHYMDIRGWRHLRL 224
Y + DD ++SGK++ L E+LP +K+ G R+L+FSQF +LDIL +D ++RL
Sbjct: 912 -SYTLKDDPWMDSGKIRVLKELLPKMKEEGSRILLFSQFTQMLDILEQVLDTLKISYVRL 970
Query: 225 DGATQVSSR 233
DG+TQV R
Sbjct: 971 DGSTQVEVR 979
>WB|WBGene00010845 [details] [associations]
symbol:M03C11.8 species:6239 "Caenorhabditis elegans"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0009792 "embryo development
ending in birth or egg hatching" evidence=IMP] InterPro:IPR000330
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0005634 GO:GO:0009792
GO:GO:0003677 GO:GO:0006281 GO:GO:0016568 GO:GO:0004386
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 KO:K14439
GeneTree:ENSGT00630000089890 EMBL:Z49128 EMBL:AL021171 PIR:T23046
RefSeq:NP_499301.2 ProteinModelPortal:G5EDG2 SMR:G5EDG2
EnsemblMetazoa:M03C11.8 GeneID:176462 KEGG:cel:CELE_M03C11.8
WormBase:M03C11.8 OMA:KEERYMA NextBio:892680 Uniprot:G5EDG2
Length = 989
Score = 366 (133.9 bits), Expect = 1.8e-32, P = 1.8e-32
Identities = 84/219 (38%), Positives = 136/219 (62%)
Query: 16 KEQATFEVEQVDQAKRIISPFMLRRLKKDVLTELPKKTALVIKVPMIPSQAEKYRGLMED 75
K +A ++ +++++AK I+ P++LRRLK VL LP K+ +I+V M Q + Y ++E
Sbjct: 600 KNKALYQQDRIEEAKAILQPYILRRLKNQVLGSLPSKSEQIIEVEMKKPQKQLYDNIVEA 659
Query: 76 FKKTANPEGSNRSNEISHMSMFMMLRKMANHPLGLRYYFQENTLREIADCL-VEDPTYKG 134
++ S S + S+ S+ M LR+ ANHPL R + + L +IA L + + Y
Sbjct: 660 LQQ------SEESGD-SYGSL-MRLRQAANHPLLRRSEYTDQKLDKIAKMLCLREKAYAD 711
Query: 135 TNPQYILEDISWLSDYDIHQLSLKHKTLDCAKYKVPDDLVVESGKLKKLDEILPDLKKNG 194
Q++ ED++WLSD IHQL + + +K+ + + L ++SGK ++LD +LP+++K G
Sbjct: 712 KKWQHVSEDLAWLSDIKIHQLCERFRCT--SKFLLNEQLALKSGKCEQLDVMLPEIQKKG 769
Query: 195 HRVLIFSQFIFVLDILGHYMDIRGWRHLRLDGATQVSSR 233
+VLIFSQF +LDIL Y++IRG+ + RLDG T V R
Sbjct: 770 DKVLIFSQFTSMLDILEVYLNIRGYSYKRLDGQTPVLDR 808
>ZFIN|ZDB-GENE-091113-61 [details] [associations]
symbol:si:dkey-76p7.6 "si:dkey-76p7.6" species:7955
"Danio rerio" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0000729 "DNA double-strand break processing" evidence=ISS]
[GO:0035861 "site of double-strand break" evidence=ISS] [GO:0043044
"ATP-dependent chromatin remodeling" evidence=ISS] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0006281 "DNA repair"
evidence=IEA] [GO:0016568 "chromatin modification" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0006974 "response to DNA
damage stimulus" evidence=IEA] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0005694 "chromosome" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001650 InterPro:IPR003892
InterPro:IPR009060 Pfam:PF00176 Pfam:PF00271 PROSITE:PS51140
PROSITE:PS51194 SMART:SM00490 ZFIN:ZDB-GENE-091113-61 GO:GO:0005524
GO:GO:0005634 GO:GO:0003677 GO:GO:0004386 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0043044 SUPFAM:SSF46934
GO:GO:0000729 GO:GO:0035861 GeneTree:ENSGT00630000089890
EMBL:BX927385 IPI:IPI00901431 Ensembl:ENSDART00000113101
Bgee:E7F1C4 Uniprot:E7F1C4
Length = 954
Score = 365 (133.5 bits), Expect = 2.1e-32, P = 2.1e-32
Identities = 80/218 (36%), Positives = 137/218 (62%)
Query: 16 KEQATFEVEQVDQAKRIISPFMLRRLKKDVLTELPKKTALVIKVPMIPSQAEKYRGLMED 75
+EQ++FE +++ AK I+ PF+LRR+K +VL +LP K V M Q E Y L+
Sbjct: 628 EEQSSFERDRITHAKLIMKPFILRRVKSEVLKQLPAKEEQVEFCAMSERQQELYSALLHK 687
Query: 76 FKKTANPEGSNRSNEISHMSMFMMLRKMANHPLGLRYYFQENTLREIADCLVEDPTYKGT 135
K ++N G R E++++ M LRKM+NHPL R ++ L+ ++ ++++P+++
Sbjct: 688 LKHSSN--GEKR--ELTNV--MMQLRKMSNHPLLHRQFYTTEKLKAMSKLMLKEPSHRDA 741
Query: 136 NPQYILEDISWLSDYDIHQLSLKHKTLDCAKYKVPDDLVVESGKLKKLDEILPDLKKNGH 195
+P I ED+ LSD+++H+L ++ L +Y++ D++++SGKL L ++L LK+ G
Sbjct: 742 DPALIKEDMEVLSDFELHRLCQQYSALH--EYQLNTDVLLDSGKLSLLTQLLNSLKEKGD 799
Query: 196 RVLIFSQFIFVLDILGHYMDIRGWRHLRLDGATQVSSR 233
RV++FSQF +LDIL ++ R+ RLDG+T +S R
Sbjct: 800 RVVLFSQFTMMLDILEVFLRHHKHRYNRLDGSTPMSDR 837
>ZFIN|ZDB-GENE-050522-499 [details] [associations]
symbol:smarcad1 "SWI/SNF-related, matrix-associated
actin-dependent regulator of chromatin, subfamily a, containing
DEAD/H box 1" species:7955 "Danio rerio" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0043044 "ATP-dependent chromatin
remodeling" evidence=ISS] [GO:0000729 "DNA double-strand break
processing" evidence=ISS] [GO:0035861 "site of double-strand break"
evidence=ISS] [GO:0016787 "hydrolase activity" evidence=IEA]
[GO:0005694 "chromosome" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0006281 "DNA repair" evidence=IEA]
[GO:0016568 "chromatin modification" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0006974 "response to DNA damage
stimulus" evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR003892 InterPro:IPR009060 Pfam:PF00176 Pfam:PF00271
PROSITE:PS51140 PROSITE:PS51194 SMART:SM00490
ZFIN:ZDB-GENE-050522-499 GO:GO:0005524 GO:GO:0005634 GO:GO:0003677
GO:GO:0004386 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0043044 SUPFAM:SSF46934 GO:GO:0000729 HOGENOM:HOG000172362
GO:GO:0035861 GeneTree:ENSGT00630000089890 OMA:KEERYMA
HOVERGEN:HBG055804 EMBL:AL807792 IPI:IPI00492619 UniGene:Dr.3950
ProteinModelPortal:B0R061 Ensembl:ENSDART00000091409
ArrayExpress:B0R061 Bgee:B0R061 Uniprot:B0R061
Length = 972
Score = 346 (126.9 bits), Expect = 1.9e-31, Sum P(2) = 1.9e-31
Identities = 76/218 (34%), Positives = 134/218 (61%)
Query: 16 KEQATFEVEQVDQAKRIISPFMLRRLKKDVLTELPKKTALVIKVPMIPSQAEKYRGLMED 75
+E+++F +++ QA+ I+ PF+LRR+K +VL ELP K + PM +Q + Y L +
Sbjct: 647 EEESSFHKDRIAQARLIMKPFILRRVKSEVLKELPPKMEKIEMCPMSDAQHKLYDILFKR 706
Query: 76 FKKTANPEGSNRSNEISHMSMFMMLRKMANHPLGLRYYFQENTLREIADCLVEDPTYKGT 135
KKT P G R E+ ++ M LRKMANHPL R Y+ + L ++ ++++PT+
Sbjct: 707 LKKT--PNGDKR--ELCNV--MMQLRKMANHPLLHRQYYTSDKLAAMSKAMLKEPTHYDA 760
Query: 136 NPQYILEDISWLSDYDIHQLSLKHKTLDCAKYKVPDDLVVESGKLKKLDEILPDLKKNGH 195
+P I ED+ +SD+++H L ++ ++ + +++ L+++SGK L + L LK+ G
Sbjct: 761 DPALIQEDMEVMSDFELHNLCREYSSI--SGFQLEKALILDSGKFALLTKTLAKLKEKGD 818
Query: 196 RVLIFSQFIFVLDILGHYMDIRGWRHLRLDGATQVSSR 233
RV++FSQF +LDI+ + +++RLDG+T ++ R
Sbjct: 819 RVVLFSQFTMMLDIVEILLKHLDHQYVRLDGSTPMAER 856
Score = 37 (18.1 bits), Expect = 1.9e-31, Sum P(2) = 1.9e-31
Identities = 9/24 (37%), Positives = 14/24 (58%)
Query: 5 SEDDARYEDKRKEQATFEVEQVDQ 28
S+DD + + KRK Q + E D+
Sbjct: 138 SDDDDQPKKKRKIQRSDSSESEDE 161
>POMBASE|SPAC25A8.01c [details] [associations]
symbol:fft3 "fun thirty related protein Fft3"
species:4896 "Schizosaccharomyces pombe" [GO:0000790 "nuclear
chromatin" evidence=IDA] [GO:0003677 "DNA binding" evidence=ISM]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005515 "protein
binding" evidence=IPI] [GO:0005524 "ATP binding" evidence=ISM]
[GO:0005634 "nucleus" evidence=IDA] [GO:0006338 "chromatin
remodeling" evidence=ISS] [GO:0008094 "DNA-dependent ATPase
activity" evidence=IDA] [GO:0032017 "positive regulation of Ran
protein signal transduction" evidence=IGI] InterPro:IPR000330
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 PomBase:SPAC25A8.01c GO:GO:0005524 EMBL:CU329670
GO:GO:0003677 GO:GO:0006338 GO:GO:0000790 GO:GO:0004386
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0016585 GO:GO:0008094 OrthoDB:EOG4BCHW4 EMBL:AB027947
PIR:T38371 RefSeq:NP_593617.1 ProteinModelPortal:O42861
STRING:O42861 EnsemblFungi:SPAC25A8.01c.1 GeneID:2541531
KEGG:spo:SPAC25A8.01c HOGENOM:HOG000195581 OMA:NRASERY
NextBio:20802628 GO:GO:0032017 Uniprot:O42861
Length = 922
Score = 323 (118.8 bits), Expect = 6.3e-28, P = 6.3e-28
Identities = 75/228 (32%), Positives = 132/228 (57%)
Query: 17 EQATFEVEQVDQAKRIISPFMLRRLKKDVLTELPKKTALVIKVPMIPSQAEKY------- 69
E+A ++V +AK +++PF+LRR K VL LPKKT ++ + +Y
Sbjct: 591 ERALLSEQRVSRAKMMMAPFVLRRKKSQVLDALPKKTRIIEFCEFSEEERRRYDDFASKQ 650
Query: 70 --RGLM-EDFKKTANPEGSNRSNEISHMSMFMM-LRKMANHPLGLRYYFQENTLREIADC 125
L+ E+ KT +N + + S ++ LRK+A+HP+ R +++++ LR++A
Sbjct: 651 SVNSLLDENVMKTNLDTNANLAKKKSTAGFVLVQLRKLADHPMLFRIHYKDDILRQMAKA 710
Query: 126 LVEDPTYKGTNPQYILEDISWLSDYDIHQLSLKHKTLDCAKYKVPDDLVVESGKLKKLDE 185
++ +P YK N YI ED+ ++SD ++H L K +++ +++ D+ +++ K++KL +
Sbjct: 711 IMNEPQYKKANELYIFEDMQYMSDIELHNLCCKFPSIN--SFQLKDEPWMDATKVRKLKK 768
Query: 186 ILPDLKKNGHRVLIFSQFIFVLDILGHYMDIRGWRHLRLDGATQVSSR 233
+L + +NG RV++FSQF VLDIL M + LR DG+TQV R
Sbjct: 769 LLTNAVENGDRVVLFSQFTQVLDILQLVMKSLNLKFLRFDGSTQVDFR 816
>POMBASE|SPAC20G8.08c [details] [associations]
symbol:fft1 "fun thirty related protein Fft1
(predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0000790
"nuclear chromatin" evidence=NAS] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0004003 "ATP-dependent DNA helicase activity"
evidence=ISM] [GO:0005524 "ATP binding" evidence=ISM] [GO:0005634
"nucleus" evidence=IDA] [GO:0006338 "chromatin remodeling"
evidence=ISS] InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176
Pfam:PF00271 PROSITE:PS51194 SMART:SM00490 PomBase:SPAC20G8.08c
GO:GO:0005524 EMBL:CU329670 GenomeReviews:CU329670_GR GO:GO:0003677
GO:GO:0006338 GO:GO:0000790 GO:GO:0004003 HSSP:Q97XQ5
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0016585 PIR:T38130 RefSeq:NP_593325.1
ProteinModelPortal:P87114 EnsemblFungi:SPAC20G8.08c.1
GeneID:2541983 KEGG:spo:SPAC20G8.08c OrthoDB:EOG4BCHW4
NextBio:20803065 Uniprot:P87114
Length = 944
Score = 293 (108.2 bits), Expect = 1.1e-24, P = 1.1e-24
Identities = 77/217 (35%), Positives = 122/217 (56%)
Query: 17 EQATFEVEQVDQAKRIISPFMLRRLKKDVLTELPKKTALVIKVPMIPSQAEKYRGLMEDF 76
E+A E++ +AK I++PF+LRR K++VL++LP K V M +Q Y ++E
Sbjct: 616 ERAYLSQERISRAKTIMNPFILRRRKENVLSDLPPKIQHVEYCHMEETQLSLYLSVLE-L 674
Query: 77 KKTANPEGSNRSNEISHMSMFMMLRKMANHPLGLRYYFQENTLREIADCLVEDPTYKGTN 136
K N +NR N + M LRK A H L R + TL ++ ++ + Y N
Sbjct: 675 KNLVN---ANREN------ILMQLRKAALHQLLFRSQYNLETLSLMSKRILREDAYLDAN 725
Query: 137 PQYILEDISWLSDYDIHQLSLKHKTLDCAKYKVPDDLVVESGKLKKLDEILPDLKKNGHR 196
PQYI ED+ +SD+++H+L+ +++ L + + ++S K+KKL +L + N R
Sbjct: 726 PQYIFEDMEVMSDFELHKLADQYRHLH--PFALKGKPWMDSAKVKKLCSLLKKSRPN-ER 782
Query: 197 VLIFSQFIFVLDILGHYMDIRGWRHLRLDGATQVSSR 233
+LIFSQF VLDIL + ++ LRLDG+T V +R
Sbjct: 783 ILIFSQFTQVLDILEYVLNTLDLEFLRLDGSTPVETR 819
>DICTYBASE|DDB_G0267556 [details] [associations]
symbol:DDB_G0267556 "CHR group protein" species:44689
"Dictyostelium discoideum" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176
Pfam:PF00271 PROSITE:PS51194 SMART:SM00490 dictyBase:DDB_G0267556
GO:GO:0005524 GO:GO:0003677 EMBL:AAFI02000003 GO:GO:0004386
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
RefSeq:XP_647125.1 ProteinModelPortal:Q55GQ9
EnsemblProtists:DDB0233433 GeneID:8615929 KEGG:ddi:DDB_G0267556
InParanoid:Q55GQ9 OMA:CANVVIF ProtClustDB:CLSZ2501118
Uniprot:Q55GQ9
Length = 1159
Score = 209 (78.6 bits), Expect = 1.9e-24, Sum P(3) = 1.9e-24
Identities = 59/156 (37%), Positives = 87/156 (55%)
Query: 85 SNRSNEISHMSMFMMLRKMANHPLGLR-YYFQENTLREIADCLV-EDPT---YKGTNPQY 139
SN S + ++ M LRK ANHPL + ++ +N +++I + L +D Y+ P
Sbjct: 887 SNGSGQFVLNNILMQLRKAANHPLLCKNIFYNDNQIQDIVNHLATKDKDWSDYRNDIPS- 945
Query: 140 ILEDISWLSDYDIHQLSLKHKTLDCAKYKVPDDLVVE-SGKLKKLDEILP-DLKKNGHRV 197
+ E SDYD+ + +H+ L KY +PD+ +E S K KL EIL ++ N +V
Sbjct: 946 LKELFDTYSDYDVFKTVCEHEDLG-DKYWIPDEQFIETSTKCLKLKEILAKEIGVNKSKV 1004
Query: 198 LIFSQFIFVLDILGHYMDIRGWRHLRLDGATQVSSR 233
LIFSQ VLDIL +DI G+ RLDG+T V+ R
Sbjct: 1005 LIFSQMTRVLDILEDVLDIFGYNFTRLDGSTPVNER 1040
Score = 83 (34.3 bits), Expect = 1.9e-24, Sum P(3) = 1.9e-24
Identities = 21/53 (39%), Positives = 32/53 (60%)
Query: 26 VDQAKRIISPFMLRRLKKDVLTELPKKTALVIKVPMIPS-QAEKYRGLMEDFK 77
+ + K+I+SPF+LRRLK V EL K V ++ +P Q E Y+ ++E K
Sbjct: 751 ITRMKKILSPFILRRLKSTVSKELKPKIEHV-EICKLPKFQDETYKNIIERSK 802
Score = 51 (23.0 bits), Expect = 1.9e-24, Sum P(3) = 1.9e-24
Identities = 11/25 (44%), Positives = 18/25 (72%)
Query: 7 DDARYEDKRKEQATFEVEQVDQAKR 31
DD + E+K+ EQ +VEQV+Q ++
Sbjct: 428 DDEKEEEKQVEQVE-QVEQVEQVEQ 451
Score = 51 (23.0 bits), Expect = 1.9e-24, Sum P(3) = 1.9e-24
Identities = 12/36 (33%), Positives = 24/36 (66%)
Query: 2 DSDSEDDA----RYEDKRKEQATFE-VEQVDQAKRI 32
DS++ED+ +D+++E+ E VEQV+Q +++
Sbjct: 414 DSETEDEKSQIIEIDDEKEEEKQVEQVEQVEQVEQV 449
Score = 42 (19.8 bits), Expect = 1.6e-23, Sum P(3) = 1.6e-23
Identities = 9/20 (45%), Positives = 14/20 (70%)
Query: 2 DSDSEDDARYEDKRKEQATF 21
DSD+EDD E++ +E+ F
Sbjct: 365 DSDTEDD---EEEEEEEVLF 381
Score = 42 (19.8 bits), Expect = 3.6e-17, Sum P(2) = 3.6e-17
Identities = 18/84 (21%), Positives = 41/84 (48%)
Query: 1 MDSDSEDDARYEDKRKEQATFEVEQVDQAKRIISPFMLRRLKKDVLTELPKKTALVIKVP 60
++ D ED+ ED+ ++ F + V +R ++ ++ ++L ++T ++K P
Sbjct: 111 VEEDEEDEDE-EDEEDDEDEFNLPNVSVEQRKKK----QKQQEQESSKLLEETEKLLKQP 165
Query: 61 -MIPSQAEKY--RGLMEDFKKTAN 81
+IP ++ G +D KK +
Sbjct: 166 SVIPWTSKNVLNNGTSKDDKKNVD 189
>ASPGD|ASPL0000037473 [details] [associations]
symbol:AN2973 species:162425 "Emericella nidulans"
[GO:0000729 "DNA double-strand break processing" evidence=IEA]
[GO:0070870 "heterochromatin maintenance involved in chromatin
silencing" evidence=IEA] [GO:0030466 "chromatin silencing at silent
mating-type cassette" evidence=IEA] [GO:0043044 "ATP-dependent
chromatin remodeling" evidence=IEA] [GO:0000183 "chromatin
silencing at rDNA" evidence=IEA] [GO:0070869 "heterochromatin
assembly involved in chromatin silencing" evidence=IEA] [GO:0006348
"chromatin silencing at telomere" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0005829 "cytosol" evidence=IEA]
[GO:0031934 "mating-type region heterochromatin" evidence=IEA]
[GO:0005739 "mitochondrion" evidence=IEA] [GO:0000775 "chromosome,
centromeric region" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0003682 "chromatin binding" evidence=IEA]
[GO:0008094 "DNA-dependent ATPase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0003677 EMBL:BN001306 EMBL:AACD01000051
GO:GO:0004386 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 OrthoDB:EOG4BCHW4 KO:K14439 HOGENOM:HOG000195581
RefSeq:XP_660577.1 ProteinModelPortal:Q5B907
EnsemblFungi:CADANIAT00010107 GeneID:2874181 KEGG:ani:AN2973.2
OMA:QQVGINW Uniprot:Q5B907
Length = 1107
Score = 291 (107.5 bits), Expect = 2.3e-24, P = 2.3e-24
Identities = 72/238 (30%), Positives = 131/238 (55%)
Query: 4 DSEDDARY--EDKRK-----EQATFEVEQVDQAKRIISPFMLRRLKKDVLTELPKKTALV 56
+ +DD +Y +K K A +++++AK ++ PF+LRR K V+ +LP K + V
Sbjct: 747 ERKDDLQYIFSNKAKTVDESHSALLSAQRIERAKSMLKPFVLRRKKHQVI-DLPAKISRV 805
Query: 57 IKVPMIPSQAEKYRGLMEDFKKTANPEGSNRSNEISHMSMFMMLRKMANHPLGLRYYFQE 116
M +Q E Y + KK + + ++ M LR+ A HPL R ++ +
Sbjct: 806 EYCEMNAAQREIYEHEKNEVKKLLEDRAAGKKTGNKSANILMKLRQAAIHPLLHRRHYND 865
Query: 117 NTLREIADCLVEDPTYKGTNPQYILEDISWLSDYDIHQLSLKH-KTLDCAKYKVPDDLVV 175
L +++ +++ + ++P+ I ED+ +D++ HQL +++ K+L K+ + ++ +
Sbjct: 866 KILTKMSKACLQEEKWAESDPKLIYEDLQPYNDFECHQLCVENPKSL--GKFALKNNEWM 923
Query: 176 ESGKLKKLDEILPDLKKNGHRVLIFSQFIFVLDILGHYMDIRGWRHLRLDGATQVSSR 233
+SGK+ KL E+L K+NG RVL+FSQF +DIL ++ + + +RLDG T V R
Sbjct: 924 DSGKVDKLCELLRRFKENGDRVLVFSQFRLAMDILEVVLENQHLKFVRLDGTTSVEDR 981
>TAIR|locus:2051678 [details] [associations]
symbol:ETL1 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA;ISS] [GO:0004386 "helicase activity"
evidence=IEA;ISS] [GO:0005524 "ATP binding" evidence=IEA;ISS]
[GO:0005634 "nucleus" evidence=ISM] InterPro:IPR000330
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 EMBL:CP002685 GenomeReviews:CT485783_GR
GO:GO:0003677 GO:GO:0004386 eggNOG:COG0553 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 EMBL:AC005936 HOGENOM:HOG000172362
KO:K14439 EMBL:AY059857 EMBL:BT002576 IPI:IPI00520453 PIR:H84432
RefSeq:NP_178318.1 UniGene:At.13358 ProteinModelPortal:Q9ZUL5
SMR:Q9ZUL5 IntAct:Q9ZUL5 PaxDb:Q9ZUL5 PRIDE:Q9ZUL5
EnsemblPlants:AT2G02090.1 GeneID:814740 KEGG:ath:AT2G02090
TAIR:At2g02090 InParanoid:Q9ZUL5 OMA:CAKISAD PhylomeDB:Q9ZUL5
ProtClustDB:CLSN2683669 ArrayExpress:Q9ZUL5 Genevestigator:Q9ZUL5
Uniprot:Q9ZUL5
Length = 763
Score = 286 (105.7 bits), Expect = 4.1e-24, P = 4.1e-24
Identities = 77/233 (33%), Positives = 123/233 (52%)
Query: 13 DKRKEQATFEVEQVDQAKRIISPFMLRRLKKDVLTELPKKTALVIKVPMIPSQAEKYRGL 72
D +K + E + + K I+ PF+LRRLK DV+ +L K V V M Q + Y+
Sbjct: 412 DLKKLLNAEDTELITRMKSILGPFILRRLKSDVMQQLVPKIQRVEYVLMERKQEDAYKEA 471
Query: 73 MEDFKKTANPE----GSNRSNEISHM-------SMFMMLRKMANHPLGLRYYFQENTLRE 121
+E+++ + S N ++ + F RK+ANHPL +R + + +
Sbjct: 472 IEEYRAASQARLVKLSSKSLNSLAKALPKRQISNYFTQFRKIANHPLLIRRIYSDEDVIR 531
Query: 122 IADCLVEDPTYK-GTNPQYILEDISWLSDYDIHQLSLKHKTLDCAKYKVPDDLVVESGKL 180
IA L + + ++E++ +D+ IHQL ++ D K + D V+ S K
Sbjct: 532 IARKLHPIGAFGFECSLDRVIEEVKGFNDFRIHQLLFQYGVND-TKGTLSDKHVMLSAKC 590
Query: 181 KKLDEILPDLKKNGHRVLIFSQFIFVLDILGHYMDIRGWRHLRLDGATQVSSR 233
+ L E+LP +KK+GHRVLIFSQ+ +LDIL +D+ G + RLDG+TQV+ R
Sbjct: 591 RTLAELLPSMKKSGHRVLIFSQWTSMLDILEWTLDVIGVTYRRLDGSTQVTDR 643
>SGD|S000000017 [details] [associations]
symbol:FUN30 "Snf2p family member with ATP-dependent
chromatin remodeling activity" species:4932 "Saccharomyces
cerevisiae" [GO:0005634 "nucleus" evidence=IEA;IDA] [GO:0070870
"heterochromatin maintenance involved in chromatin silencing"
evidence=IGI;IMP] [GO:0006974 "response to DNA damage stimulus"
evidence=IEA] [GO:0016568 "chromatin modification" evidence=IEA]
[GO:0005739 "mitochondrion" evidence=IDA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA;IDA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0000729 "DNA double-strand break
processing" evidence=IMP] [GO:0031934 "mating-type region
heterochromatin" evidence=IPI] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0008094 "DNA-dependent ATPase activity"
evidence=IMP;IDA] [GO:0003682 "chromatin binding" evidence=IDA]
[GO:0043044 "ATP-dependent chromatin remodeling" evidence=IMP]
[GO:0000775 "chromosome, centromeric region" evidence=IDA]
[GO:0005694 "chromosome" evidence=IEA] [GO:0000183 "chromatin
silencing at rDNA" evidence=IMP] [GO:0006348 "chromatin silencing
at telomere" evidence=IMP] [GO:0030466 "chromatin silencing at
silent mating-type cassette" evidence=IMP] [GO:0016787 "hydrolase
activity" evidence=IEA] [GO:0070869 "heterochromatin assembly
involved in chromatin silencing" evidence=IMP] [GO:0006281 "DNA
repair" evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194 SMART:SM00490
SGD:S000000017 GO:GO:0005739 GO:GO:0005524 GO:GO:0005634
GO:GO:0000775 EMBL:L05146 EMBL:BK006935 GO:GO:0003677 GO:GO:0003682
GO:GO:0030466 GO:GO:0000183 GO:GO:0006348 GO:GO:0004386
GO:GO:0031934 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0043044 GO:GO:0070869 GO:GO:0000729
GO:GO:0008094 OrthoDB:EOG4BCHW4 KO:K14439 HOGENOM:HOG000195581
PIR:S22266 RefSeq:NP_009383.1 ProteinModelPortal:P31380 SMR:P31380
DIP:DIP-2541N IntAct:P31380 MINT:MINT-425278 STRING:P31380
PaxDb:P31380 PeptideAtlas:P31380 EnsemblFungi:YAL019W GeneID:851214
KEGG:sce:YAL019W CYGD:YAL019w GeneTree:ENSGT00630000089890
OMA:KIEPYYG NextBio:968097 Genevestigator:P31380 GermOnline:YAL019W
GO:GO:0070870 Uniprot:P31380
Length = 1131
Score = 274 (101.5 bits), Expect = 1.9e-23, Sum P(2) = 1.9e-23
Identities = 68/235 (28%), Positives = 130/235 (55%)
Query: 12 EDKRKEQATFEVEQVDQAKRIISPFMLRRLKKDVLTELPKKTALV-------IKVPMIPS 64
+D + E + +AK ++ PF+LRR K VL LP K + I+ +
Sbjct: 773 DDNKNHNPLLAQEAITRAKTMMKPFILRRRKDQVLKHLPPKHTHIQYCELNAIQKKIYDK 832
Query: 65 QAE---KYRGLMEDFKKTANPEGSNRSNEISHMSMFMMLRKMANHPLGLRYYFQENTLRE 121
+ + +++ +++D + + + ++ S ++ M LRK + HPL R + + + +
Sbjct: 833 EIQIVLEHKRMIKDGELPKDAKEKSKLQSSSSKNLIMALRKASLHPLLFRNIYNDKIITK 892
Query: 122 IADCLVEDPTY-KGTNPQYILEDISWLSDYDIHQLSLKH-KTLDCAKYKVPDDLVVESGK 179
++D ++++P Y + N +YI ED+S+++D+++H+L TL +KY++ +D ++SGK
Sbjct: 893 MSDAILDEPAYAENGNKEYIKEDMSYMTDFELHKLCCNFPNTL--SKYQLHNDEWMQSGK 950
Query: 180 LKKLDEILPDL-KKNGHRVLIFSQFIFVLDILGHYMDIRGWRHLRLDGATQVSSR 233
+ L ++L + +VLIFS F VLDIL + ++ LRLDG+TQV+ R
Sbjct: 951 IDALKKLLKTIIVDKQEKVLIFSLFTQVLDILEMVLSTLDYKFLRLDGSTQVNDR 1005
Score = 36 (17.7 bits), Expect = 1.9e-23, Sum P(2) = 1.9e-23
Identities = 7/19 (36%), Positives = 13/19 (68%)
Query: 2 DSDSEDDARYEDKRKEQAT 20
D D+E++A + KR+ A+
Sbjct: 328 DKDTEENASNKRKRRAAAS 346
>ASPGD|ASPL0000052010 [details] [associations]
symbol:AN1255 species:162425 "Emericella nidulans"
[GO:0004003 "ATP-dependent DNA helicase activity" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0031934 "mating-type region
heterochromatin" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0000070
"mitotic sister chromatid segregation" evidence=IEA] [GO:0030466
"chromatin silencing at silent mating-type cassette" evidence=IEA]
[GO:0060303 "regulation of nucleosome density" evidence=IEA]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS50013 PROSITE:PS51194
SMART:SM00298 SMART:SM00490 Pfam:PF00385 GO:GO:0005524
GO:GO:0005634 EMBL:BN001308 GO:GO:0003677 EMBL:AACD01000017
GO:GO:0004386 InterPro:IPR016197 SUPFAM:SSF54160 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 InterPro:IPR023780
InterPro:IPR023779 PROSITE:PS00598 InterPro:IPR025260 Pfam:PF13907
KO:K11367 HOGENOM:HOG000207917 OrthoDB:EOG4TF3TB RefSeq:XP_658859.1
ProteinModelPortal:Q5BDX5 STRING:Q5BDX5
EnsemblFungi:CADANIAT00001368 GeneID:2877029 KEGG:ani:AN1255.2
OMA:GPRRMAI Uniprot:Q5BDX5
Length = 1517
Score = 171 (65.3 bits), Expect = 5.9e-22, Sum P(2) = 5.9e-22
Identities = 33/61 (54%), Positives = 45/61 (73%)
Query: 173 LVVESGKLKKLDEILPDLKKNGHRVLIFSQFIFVLDILGHYMDIRGWRHLRLDGATQVSS 232
L+ SGK+ LD++L LK++GHRVLIFSQ + +LDILG YM+ RG+ + RLDG +S
Sbjct: 751 LITSSGKMMLLDQLLAKLKRDGHRVLIFSQMVKMLDILGDYMEYRGYTYQRLDGTIPSAS 810
Query: 233 R 233
R
Sbjct: 811 R 811
Score = 129 (50.5 bits), Expect = 5.9e-22, Sum P(2) = 5.9e-22
Identities = 30/84 (35%), Positives = 49/84 (58%)
Query: 24 EQVDQAKRIISPFMLRRLKKDVLTELPKKTALVIKVPMIPSQAEKYRGLMEDFKKTANPE 83
E++ + + ISPFMLRR K V ++LP KT +I+V + Q E Y+ ++ N E
Sbjct: 646 EKLAELTKAISPFMLRRTKTKVESDLPPKTEKIIRVELSDVQLEYYKNILTKNYAALN-E 704
Query: 84 GSNRSNEISHMSMFMMLRKMANHP 107
G+ + S +++ M L+K +NHP
Sbjct: 705 GTKGQKQ-SLLNIMMELKKASNHP 727
Score = 37 (18.1 bits), Expect = 2.2e-12, Sum P(2) = 2.2e-12
Identities = 7/17 (41%), Positives = 12/17 (70%)
Query: 135 TNPQYILEDISWLSDYD 151
T +Y+L D S+LS ++
Sbjct: 557 TTYEYVLVDSSFLSQFN 573
>SGD|S000000966 [details] [associations]
symbol:CHD1 "Chromatin remodeler that regulates various
aspects of transcription" species:4932 "Saccharomyces cerevisiae"
[GO:0030874 "nucleolar chromatin" evidence=IDA] [GO:0042766
"nucleosome mobilization" evidence=IDA] [GO:0000182 "rDNA binding"
evidence=IDA] [GO:0005739 "mitochondrion" evidence=IDA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0046695 "SLIK (SAGA-like)
complex" evidence=IDA] [GO:0000124 "SAGA complex" evidence=IDA]
[GO:0008094 "DNA-dependent ATPase activity" evidence=IDA]
[GO:0034401 "regulation of transcription by chromatin organization"
evidence=IGI;IMP] [GO:0043044 "ATP-dependent chromatin remodeling"
evidence=IDA] [GO:0001178 "regulation of transcriptional start site
selection at RNA polymerase II promoter" evidence=IGI] [GO:2000616
"negative regulation of histone H3-K9 acetylation" evidence=IMP]
[GO:0071441 "negative regulation of histone H3-K14 acetylation"
evidence=IMP] [GO:0006368 "transcription elongation from RNA
polymerase II promoter" evidence=IGI;IPI] [GO:0000790 "nuclear
chromatin" evidence=IDA] [GO:0031490 "chromatin DNA binding"
evidence=IDA] [GO:0016584 "nucleosome positioning"
evidence=IGI;IDA] [GO:0003677 "DNA binding" evidence=IEA;IDA]
[GO:0006369 "termination of RNA polymerase II transcription"
evidence=IGI;IMP] [GO:0071894 "histone H2B conserved C-terminal
lysine ubiquitination" evidence=IMP] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0016568 "chromatin
modification" evidence=IEA] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0035064 "methylated histone residue binding" evidence=IDA]
[GO:2000104 "negative regulation of DNA-dependent DNA replication"
evidence=IGI] [GO:0006363 "termination of RNA polymerase I
transcription" evidence=IGI] InterPro:IPR000330 InterPro:IPR000953
InterPro:IPR001650 InterPro:IPR009057 Pfam:PF00176 Pfam:PF00271
PROSITE:PS00690 PROSITE:PS50013 PROSITE:PS51194 SMART:SM00298
SMART:SM00490 SGD:S000000966 Pfam:PF00385 GO:GO:0005739
GO:GO:0005524 GO:GO:2000104 Gene3D:1.10.10.60 SUPFAM:SSF46689
EMBL:BK006939 GO:GO:0000124 GO:GO:0046695 GO:GO:0004386
GO:GO:0034401 GO:GO:0006368 GO:GO:0035064 GO:GO:0031490
GO:GO:0042766 InterPro:IPR016197 SUPFAM:SSF54160 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0043044
GO:GO:0016584 EMBL:U18917 InterPro:IPR023780 InterPro:IPR023779
PROSITE:PS00598 GO:GO:0006363 GO:GO:0008094 GO:GO:0006369
InterPro:IPR025260 Pfam:PF13907 GeneTree:ENSGT00560000076896
KO:K11367 HOGENOM:HOG000207917 PIR:S30818 RefSeq:NP_011091.1
PDB:2DY7 PDB:2DY8 PDB:2H1E PDB:2XB0 PDB:3MWY PDB:3TED PDBsum:2DY7
PDBsum:2DY8 PDBsum:2H1E PDBsum:2XB0 PDBsum:3MWY PDBsum:3TED
ProteinModelPortal:P32657 SMR:P32657 DIP:DIP-6362N IntAct:P32657
MINT:MINT-618890 STRING:P32657 PaxDb:P32657 PeptideAtlas:P32657
EnsemblFungi:YER164W GeneID:856911 KEGG:sce:YER164W CYGD:YER164w
OMA:IKWQFMA OrthoDB:EOG4TF3TB SABIO-RK:P32657
EvolutionaryTrace:P32657 NextBio:983353 Genevestigator:P32657
GermOnline:YER164W GO:GO:0030874 GO:GO:0000182 GO:GO:0071441
GO:GO:2000616 GO:GO:0001178 Uniprot:P32657
Length = 1468
Score = 160 (61.4 bits), Expect = 7.1e-19, Sum P(2) = 7.1e-19
Identities = 32/61 (52%), Positives = 43/61 (70%)
Query: 173 LVVESGKLKKLDEILPDLKKNGHRVLIFSQFIFVLDILGHYMDIRGWRHLRLDGATQVSS 232
L++ SGK+ LD++L LKK+GHRVLIFSQ + +LDILG Y+ I+G RLDG +
Sbjct: 690 LIMSSGKMVLLDQLLTRLKKDGHRVLIFSQMVRMLDILGDYLSIKGINFQRLDGTVPSAQ 749
Query: 233 R 233
R
Sbjct: 750 R 750
Score = 133 (51.9 bits), Expect = 7.1e-19, Sum P(2) = 7.1e-19
Identities = 38/121 (31%), Positives = 61/121 (50%)
Query: 4 DSEDDARYEDKRKEQATFEVEQVDQAKRIISPFMLRRLKKDVLTELPKKTALVIKVPMIP 63
D E D +D+ +E E + R I PF+LRRLKKDV LP KT +++V +
Sbjct: 567 DQEIDFENQDEEQE------EYIHDLHRRIQPFILRRLKKDVEKSLPSKTERILRVELSD 620
Query: 64 SQAEKYRGLMEDFKKTANPEGSNRSNEISHMSMFMMLRKMANHPLGLRYYFQENTLREIA 123
Q E Y+ ++ +A G+ + S +++ L+K +NHP L +E L++
Sbjct: 621 VQTEYYKNILTK-NYSALTAGA-KGGHFSLLNIMNELKKASNHPY-LFDNAEERVLQKFG 677
Query: 124 D 124
D
Sbjct: 678 D 678
Score = 42 (19.8 bits), Expect = 1.9e-09, Sum P(2) = 1.9e-09
Identities = 10/26 (38%), Positives = 14/26 (53%)
Query: 2 DSDSEDDARY--EDKRKEQATFEVEQ 25
DSD EDD + +RK T E ++
Sbjct: 35 DSDDEDDEDNIKQSRRKRMTTIEDDE 60
>UNIPROTKB|F1SDB8 [details] [associations]
symbol:CHD1L "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0006974 "response to DNA damage stimulus" evidence=IEA]
[GO:0006338 "chromatin remodeling" evidence=IEA] [GO:0005886
"plasma membrane" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001650 InterPro:IPR002464
Pfam:PF00176 Pfam:PF00271 PROSITE:PS00690 PROSITE:PS51194
SMART:SM00490 GO:GO:0005886 GO:GO:0005524 GO:GO:0005634
GO:GO:0005737 GO:GO:0003677 GO:GO:0006974 GO:GO:0006338
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 InterPro:IPR002589
PROSITE:PS51154 GO:GO:0008026 OMA:TCQTIAL
GeneTree:ENSGT00670000098110 EMBL:CU462855
Ensembl:ENSSSCT00000007340 Uniprot:F1SDB8
Length = 905
Score = 151 (58.2 bits), Expect = 1.8e-18, Sum P(2) = 1.8e-18
Identities = 31/67 (46%), Positives = 44/67 (65%)
Query: 167 YKVPDDLVVESGKLKKLDEILPDLKKNGHRVLIFSQFIFVLDILGHYMDIRGWRHLRLDG 226
+++ D L+ SGKL LD++L L GHRVL+FSQ +LDIL YMD RG+ + R+DG
Sbjct: 341 FEIGDHLIEASGKLHLLDKLLAFLYSKGHRVLLFSQMTQMLDILQDYMDYRGYSYERVDG 400
Query: 227 ATQVSSR 233
+ + R
Sbjct: 401 SVRGEER 407
Score = 138 (53.6 bits), Expect = 1.8e-18, Sum P(2) = 1.8e-18
Identities = 42/122 (34%), Positives = 63/122 (51%)
Query: 10 RYEDKRKEQATFEVEQVDQAKRIISPFMLRRLKKDVLTELPKKTALVIKVPMIPSQAEKY 69
RYED KE E + +++ PF+LRR+K +V ELPKKT +VI M Q + Y
Sbjct: 238 RYEDIEKES-----ESASELYKLLQPFLLRRVKAEVAAELPKKTEVVIYHGMSALQKKYY 292
Query: 70 RG-LMEDFKKTANPEGSNRSNEISHMSMFMMLRKMANHPLGLRYYFQ--ENTLREIADCL 126
+ LM+D + + E + + ++ ++ LRK +HP Y F E EI D L
Sbjct: 293 KAILMKDLEISDAFE-NEMAKKVKLQNVLSQLRKCVDHP----YLFDGVEPEPFEIGDHL 347
Query: 127 VE 128
+E
Sbjct: 348 IE 349
>POMBASE|SPAC11E3.01c [details] [associations]
symbol:swr1 "SNF2 family helicase Swr1" species:4896
"Schizosaccharomyces pombe" [GO:0000812 "Swr1 complex"
evidence=IDA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0004003
"ATP-dependent DNA helicase activity" evidence=ISM] [GO:0005524
"ATP binding" evidence=ISM] [GO:0005634 "nucleus" evidence=IDA]
[GO:0006338 "chromatin remodeling" evidence=IPI] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0043486 "histone exchange" evidence=ISO] InterPro:IPR000330
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 PROSITE:PS00690
PROSITE:PS51194 SMART:SM00490 PomBase:SPAC11E3.01c GO:GO:0005524
EMBL:CU329670 GO:GO:0006355 GenomeReviews:CU329670_GR GO:GO:0003677
GO:GO:0006351 GO:GO:0000812 GO:GO:0004003 GO:GO:0043486
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
InterPro:IPR014012 PROSITE:PS51204 KO:K11681 HOGENOM:HOG000186095
OrthoDB:EOG49S9FK PIR:T37528 RefSeq:XP_001713118.1
ProteinModelPortal:O13682 STRING:O13682 EnsemblFungi:SPAC11E3.01c.1
GeneID:3361561 KEGG:spo:SPAC11E3.01c OMA:VKNEREG NextBio:20811602
Uniprot:O13682
Length = 1288
Score = 170 (64.9 bits), Expect = 2.1e-18, Sum P(2) = 2.1e-18
Identities = 45/101 (44%), Positives = 62/101 (61%)
Query: 135 TNPQYILEDISWLSDYDIHQLSLKHKTLDCAKYKVPDD--LVVESGKLKKLDEILPDLKK 192
T P+ +L ++S + +HQ S + L A PD L + GKL+ LD +L DL
Sbjct: 953 TIPRDLLYEVSRKIN-PLHQASTR---LAIA---FPDKRLLQYDCGKLQVLDRLLKDLVS 1005
Query: 193 NGHRVLIFSQFIFVLDILGHYMDIRGWRHLRLDGATQVSSR 233
NGHRVLIF+Q VLDIL +++I G R+LRLDGAT++ R
Sbjct: 1006 NGHRVLIFTQMTKVLDILEQFLNIHGHRYLRLDGATKIEQR 1046
Score = 100 (40.3 bits), Expect = 2.1e-18, Sum P(2) = 2.1e-18
Identities = 27/83 (32%), Positives = 45/83 (54%)
Query: 26 VDQAKRIISPFMLRRLKKDVLTELPKKTALVIKVPMIPSQAEKYRGLMEDFKKTANPEGS 85
V + R++ P++LRRLK +V ++P K V+ + +++ R L +DF A
Sbjct: 665 VAKLHRVLRPYLLRRLKTEVEKQMPAKYEHVVYCQL----SKRQRFLYDDFINRARTREI 720
Query: 86 NRS-NEISHMSMFMMLRKMANHP 107
S N +S ++ M LRK+ NHP
Sbjct: 721 LASGNFMSIINCLMQLRKVCNHP 743
Score = 41 (19.5 bits), Expect = 2.8e-12, Sum P(2) = 2.8e-12
Identities = 10/41 (24%), Positives = 21/41 (51%)
Query: 5 SEDDARYEDKRKEQATFEVEQVDQAKRIIS--PFMLRRLKK 43
SED+ ++ E++ +V R+++ P LRR ++
Sbjct: 293 SEDEENEDEDITEESNLRKRKVSDKTRVVNKHPPSLRRSRR 333
>POMBASE|SPAC1783.05 [details] [associations]
symbol:hrp1 "ATP-dependent DNA helicase Hrp1"
species:4896 "Schizosaccharomyces pombe" [GO:0000122 "negative
regulation of transcription from RNA polymerase II promoter"
evidence=IMP] [GO:0000779 "condensed chromosome, centromeric
region" evidence=IDA] [GO:0000790 "nuclear chromatin" evidence=IC]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0004003 "ATP-dependent
DNA helicase activity" evidence=ISM] [GO:0005515 "protein binding"
evidence=IPI] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IDA] [GO:0006338 "chromatin remodeling"
evidence=IMP] [GO:0006369 "termination of RNA polymerase II
transcription" evidence=IMP] [GO:0007076 "mitotic chromosome
condensation" evidence=IMP] [GO:0008094 "DNA-dependent ATPase
activity" evidence=IDA] [GO:0016592 "mediator complex"
evidence=IPI] [GO:0030466 "chromatin silencing at silent
mating-type cassette" evidence=IMP] [GO:0030702 "chromatin
silencing at centromere" evidence=IMP] [GO:0035067 "negative
regulation of histone acetylation" evidence=IMP] [GO:0045944
"positive regulation of transcription from RNA polymerase II
promoter" evidence=IMP] [GO:0048096 "chromatin-mediated maintenance
of transcription" evidence=TAS] [GO:0060303 "regulation of
nucleosome density" evidence=IMP] InterPro:IPR000330
InterPro:IPR000953 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS00690 PROSITE:PS50013 PROSITE:PS51194 SMART:SM00298
SMART:SM00490 PomBase:SPAC1783.05 Pfam:PF00385 GO:GO:0005524
EMBL:CU329670 GenomeReviews:CU329670_GR GO:GO:0003677 GO:GO:0045944
GO:GO:0030466 GO:GO:0000122 GO:GO:0000790 GO:GO:0030702
GO:GO:0004003 GO:GO:0007076 GO:GO:0048096 InterPro:IPR016197
SUPFAM:SSF54160 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0000779 GO:GO:0035067 InterPro:IPR023780
PROSITE:PS00598 GO:GO:0016592 GO:GO:0006369 KO:K11367
HOGENOM:HOG000207917 OrthoDB:EOG4TF3TB EMBL:X99021 EMBL:AB027852
PIR:T43334 PIR:T50107 RefSeq:NP_593660.1 ProteinModelPortal:Q9US25
MINT:MINT-4979817 STRING:Q9US25 EnsemblFungi:SPAC1783.05.1
GeneID:2542363 KEGG:spo:SPAC1783.05 OMA:VERVIKW NextBio:20803422
GO:GO:0060303 Uniprot:Q9US25
Length = 1373
Score = 161 (61.7 bits), Expect = 2.5e-18, Sum P(2) = 2.5e-18
Identities = 31/61 (50%), Positives = 44/61 (72%)
Query: 173 LVVESGKLKKLDEILPDLKKNGHRVLIFSQFIFVLDILGHYMDIRGWRHLRLDGATQVSS 232
+++ SGK+ LD++L LK +GHRVLIFSQ + +L+ILG YM +RG+ + RLDG S
Sbjct: 699 IIMNSGKMVLLDKLLQRLKHDGHRVLIFSQMVRMLNILGEYMSLRGYNYQRLDGTIPASV 758
Query: 233 R 233
R
Sbjct: 759 R 759
Score = 125 (49.1 bits), Expect = 2.5e-18, Sum P(2) = 2.5e-18
Identities = 31/103 (30%), Positives = 61/103 (59%)
Query: 7 DDARYEDKRKEQATFEVEQVDQAKRIISPFMLRRLKKDVLTELPKKTALVIKVPMIPSQA 66
D+ ++ EQ E + D +R+ PF+LRRLKKDV LP K+ +++V + Q
Sbjct: 579 DELNFDQPNAEQ---ERDIRDLQERL-QPFILRRLKKDVEKSLPSKSERILRVELSDMQT 634
Query: 67 EKYRGLM-EDFKK-TANPEGSNRSNEISHMSMFMMLRKMANHP 107
E Y+ ++ ++++ T + +G ++S +++ + L+K++NHP
Sbjct: 635 EWYKNILTKNYRALTGHTDGRG---QLSLLNIVVELKKVSNHP 674
Score = 47 (21.6 bits), Expect = 3.1e-10, Sum P(2) = 3.1e-10
Identities = 23/78 (29%), Positives = 36/78 (46%)
Query: 11 YEDKRKEQATFEVEQVDQAKRIISPFMLRRLKK-DVLTELPKKT-ALVIK---VPMIPSQ 65
Y+D E+ E EQV++ I F+L K+ D + PK + +IK V + +
Sbjct: 187 YDDFEDEEEEVE-EQVEEEYEPIIDFVLNHRKRADAQDDDPKSSYQYLIKWQEVSHLHNT 245
Query: 66 AEKYRGL--MEDFKKTAN 81
E Y L + +KK N
Sbjct: 246 WEDYSTLSSVRGYKKVDN 263
>UNIPROTKB|F1P5V4 [details] [associations]
symbol:HELLS "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0001655 "urogenital system development"
evidence=IEA] [GO:0003682 "chromatin binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0005721 "centromeric
heterochromatin" evidence=IEA] [GO:0006346 "methylation-dependent
chromatin silencing" evidence=IEA] [GO:0010216 "maintenance of DNA
methylation" evidence=IEA] [GO:0031508 "centromeric heterochromatin
assembly" evidence=IEA] [GO:0043066 "negative regulation of
apoptotic process" evidence=IEA] [GO:0046651 "lymphocyte
proliferation" evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0005634 GO:GO:0003677 GO:GO:0003682
GO:GO:0004386 GO:GO:0005721 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0031508 GO:GO:0010216 OMA:ETFYTAI
GO:GO:0006346 GO:GO:0046651 GeneTree:ENSGT00550000075106
EMBL:AADN02027839 EMBL:AADN02027838 IPI:IPI00823178
Ensembl:ENSGALT00000008749 ArrayExpress:F1P5V4 Uniprot:F1P5V4
Length = 839
Score = 229 (85.7 bits), Expect = 6.3e-18, P = 6.3e-18
Identities = 74/218 (33%), Positives = 108/218 (49%)
Query: 31 RIISPFMLRRLKKDVLTELPKKTALVIKVPMIPSQAEKYRGLMEDFKKTANPEGSNRSN- 89
+I++PF+LRRLK DV E+P K +V+ P+ Q Y ++ + N G+N
Sbjct: 441 QILTPFLLRRLKSDVALEVPPKREVVVYAPLAKKQETFYTAIVN--RTIRNLLGNNEEEV 498
Query: 90 -EISHMSM-FMMLRKMANH-------PLGLRYYF---QENTLREIADCLVEDPTYKGTNP 137
E+S RK+ ++ P L QE ++E V P N
Sbjct: 499 VELSPTGRPKRRSRKLVDYCEEHNGSPDDLEKLINRTQEEVVKERPVVEVSMPMDSEVNL 558
Query: 138 QYILEDISWLSDYDIHQLSLKHKTLDCA--KYKVPDDLVVESGKLKKLDEILPDLKKNGH 195
+ L++I L + L LD A ++KV +DLV SGK LD +LP+LKK GH
Sbjct: 559 K--LQNIMMLLRKCCNHPYLIEYPLDPATQQFKVDEDLVKNSGKFLLLDRMLPELKKRGH 616
Query: 196 RVLIFSQFIFVLDILGHYMDIRGWRHLRLDGATQVSSR 233
+VL+FSQ +LDIL Y +RG++ RLDG+ S R
Sbjct: 617 KVLMFSQMTMMLDILMDYCYLRGFKFSRLDGSMSYSDR 654
>UNIPROTKB|Q86WJ1 [details] [associations]
symbol:CHD1L "Chromodomain-helicase-DNA-binding protein
1-like" species:9606 "Homo sapiens" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IDA] [GO:0016887 "ATPase activity"
evidence=IMP] [GO:0004003 "ATP-dependent DNA helicase activity"
evidence=TAS] [GO:0006338 "chromatin remodeling" evidence=IDA]
[GO:0006281 "DNA repair" evidence=TAS] [GO:0006974 "response to DNA
damage stimulus" evidence=IDA] [GO:0005515 "protein binding"
evidence=IPI] [GO:0005634 "nucleus" evidence=IDA] [GO:0006200 "ATP
catabolic process" evidence=IMP] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0005886
"plasma membrane" evidence=IDA] InterPro:IPR000330
InterPro:IPR001650 InterPro:IPR002464 Pfam:PF00176 Pfam:PF00271
PROSITE:PS00690 PROSITE:PS51194 SMART:SM00490 GO:GO:0005886
GO:GO:0005524 GO:GO:0005634 GO:GO:0005737 GO:GO:0000166
GO:GO:0003677 GO:GO:0006281 EMBL:AL356378 GO:GO:0006338
GO:GO:0004003 HSSP:Q97XQ5 eggNOG:COG0553 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 InterPro:IPR002589 PROSITE:PS51154
CTD:9557 HOVERGEN:HBG077542 OrthoDB:EOG4SXNBV EMBL:AF537213
EMBL:AK001342 EMBL:AK027631 EMBL:EF560738 EMBL:BC001171
EMBL:BC005038 EMBL:BC008649 EMBL:BC043501 EMBL:BC077717
EMBL:AK223496 IPI:IPI00329088 IPI:IPI00854584 IPI:IPI00890729
IPI:IPI00890749 RefSeq:NP_001243265.1 RefSeq:NP_001243266.1
RefSeq:NP_001243267.1 RefSeq:NP_004275.4 RefSeq:NP_078844.2
RefSeq:XP_003960255.1 RefSeq:XP_003960264.1 UniGene:Hs.191164
ProteinModelPortal:Q86WJ1 SMR:Q86WJ1 DIP:DIP-48933N IntAct:Q86WJ1
STRING:Q86WJ1 PhosphoSite:Q86WJ1 DMDM:311033359 PaxDb:Q86WJ1
PRIDE:Q86WJ1 Ensembl:ENST00000369258 Ensembl:ENST00000369259
Ensembl:ENST00000431239 Ensembl:ENST00000579763
Ensembl:ENST00000583055 GeneID:101060601 GeneID:9557
KEGG:hsa:101060601 KEGG:hsa:9557 UCSC:uc001epm.4 UCSC:uc001epo.4
UCSC:uc009wjh.3 GeneCards:GC01P146717 H-InvDB:HIX0000988
H-InvDB:HIX0028745 HGNC:HGNC:1916 HPA:HPA027789 HPA:HPA028670
MIM:613039 neXtProt:NX_Q86WJ1 PharmGKB:PA26452 InParanoid:Q86WJ1
OMA:TCQTIAL PhylomeDB:Q86WJ1 ChiTaRS:CHD1L GenomeRNAi:9557
NextBio:35849 ArrayExpress:Q86WJ1 Bgee:Q86WJ1 CleanEx:HS_CHD1L
Genevestigator:Q86WJ1 Uniprot:Q86WJ1
Length = 897
Score = 149 (57.5 bits), Expect = 7.1e-18, Sum P(2) = 7.1e-18
Identities = 32/67 (47%), Positives = 43/67 (64%)
Query: 167 YKVPDDLVVESGKLKKLDEILPDLKKNGHRVLIFSQFIFVLDILGHYMDIRGWRHLRLDG 226
++V D L SGKL LD++L L GHRVL+FSQ +LDIL YMD RG+ + R+DG
Sbjct: 336 FEVGDHLTEASGKLHLLDKLLAFLYSGGHRVLLFSQMTQMLDILQDYMDYRGYSYERVDG 395
Query: 227 ATQVSSR 233
+ + R
Sbjct: 396 SVRGEER 402
Score = 135 (52.6 bits), Expect = 7.1e-18, Sum P(2) = 7.1e-18
Identities = 41/122 (33%), Positives = 60/122 (49%)
Query: 10 RYEDKRKEQATFEVEQVDQAKRIISPFMLRRLKKDVLTELPKKTALVIKVPMIPSQAEKY 69
RY+D KE E + +++ PF+LRR+K +V TELPKKT +VI M Q + Y
Sbjct: 236 RYQDIEKES-----ESASELHKLLQPFLLRRVKAEVATELPKKTEVVIYHGMSALQKKYY 290
Query: 70 RG-LMEDFKKTANPEGSNRSNEISHMSMFMMLRKMANHPLGLRYYFQ--ENTLREIADCL 126
+ LM+D N + ++ ++ LRK +HP Y F E E+ D L
Sbjct: 291 KAILMKDLDAFEN----ETAKKVKLQNILSQLRKCVDHP----YLFDGVEPEPFEVGDHL 342
Query: 127 VE 128
E
Sbjct: 343 TE 344
>CGD|CAL0000831 [details] [associations]
symbol:orf19.1734 species:5476 "Candida albicans" [GO:0031011
"Ino80 complex" evidence=IEA] [GO:0042766 "nucleosome mobilization"
evidence=IEA] [GO:0006281 "DNA repair" evidence=IEA] [GO:0043486
"histone exchange" evidence=IEA] [GO:0006348 "chromatin silencing
at telomere" evidence=IEA] [GO:0006366 "transcription from RNA
polymerase II promoter" evidence=IEA] [GO:0016584 "nucleosome
positioning" evidence=IEA] [GO:0045944 "positive regulation of
transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0043618 "regulation of transcription from RNA polymerase II
promoter in response to stress" evidence=IEA] [GO:0043140
"ATP-dependent 3'-5' DNA helicase activity" evidence=IEA]
[GO:0016887 "ATPase activity" evidence=IEA] InterPro:IPR000330
InterPro:IPR001650 InterPro:IPR020838 Pfam:PF00176 Pfam:PF00271
Pfam:PF13892 PROSITE:PS51194 PROSITE:PS51413 SMART:SM00490
CGD:CAL0000831 GO:GO:0005524 GO:GO:0005634 GO:GO:0006355
GO:GO:0003677 GO:GO:0006281 GO:GO:0006351 GO:GO:0016568
GO:GO:0004386 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 EMBL:AACQ01000298 EMBL:AACQ01000297
RefSeq:XP_710247.1 RefSeq:XP_710254.1 STRING:Q59KI4 GeneID:3648140
GeneID:3648148 KEGG:cal:CaO19.1734 KEGG:cal:CaO19.9302 KO:K11665
Uniprot:Q59KI4
Length = 1387
Score = 164 (62.8 bits), Expect = 8.9e-18, Sum P(2) = 8.9e-18
Identities = 31/73 (42%), Positives = 49/73 (67%)
Query: 163 DCAKYKVP--DDLVVESGKLKKLDEILPDLKKNGHRVLIFSQFIFVLDILGHYMDIRGWR 220
D + ++P D + ESGKL KLDE+L DLK+ GHR+LI+ Q ++ I Y+ + ++
Sbjct: 1219 DYSNIRMPSMDRFIAESGKLAKLDELLIDLKRGGHRILIYFQMTRMMQIFEEYLAYKSYK 1278
Query: 221 HLRLDGATQVSSR 233
++RLDG+T + SR
Sbjct: 1279 YIRLDGSTTIESR 1291
Score = 114 (45.2 bits), Expect = 8.9e-18, Sum P(2) = 8.9e-18
Identities = 27/100 (27%), Positives = 50/100 (50%)
Query: 12 EDKRKEQATFEVEQVDQAKRIISPFMLRRLKKDVLTELPKKTALVIKVPMIPSQAEKYRG 71
E + + + +Q+ + I+ PFMLRR+KK+V +EL K + + + Q + Y+
Sbjct: 873 ESHAQSNTSLDEQQLRRLHMILKPFMLRRIKKNVQSELGDKVEIDVYCDLTTRQKKLYQQ 932
Query: 72 LMEDFKKTANP----EGSNRSNEISHMSMFMMLRKMANHP 107
L + E ++ S++ S ++ M RK+ NHP
Sbjct: 933 LRSQISMSDTDLLELESNSTSSDSSLANLVMQFRKVCNHP 972
Score = 45 (20.9 bits), Expect = 1.1e-11, Sum P(3) = 1.1e-11
Identities = 12/37 (32%), Positives = 20/37 (54%)
Query: 114 FQENTLREIADCLVEDPTY-KGTNPQYILEDISWLSD 149
FQ TL + D + P K T +Y L+ ++WL++
Sbjct: 651 FQNPTL--LGDITIPQPNMLKCTLKEYQLKGLNWLAN 685
Score = 41 (19.5 bits), Expect = 1.1e-11, Sum P(3) = 1.1e-11
Identities = 22/94 (23%), Positives = 39/94 (41%)
Query: 37 MLRRLKKDVLTELPKKTALVIKVPMIPSQAEKYRGLMEDFKKTANPEGSN-----RSNEI 91
+L + KK+ K+ + K+ + +Q E Y + KT EG+N +SN
Sbjct: 523 LLDKAKKEEEEREAKRQSR--KLNFLITQTELYSHFIGKKIKTDELEGTNADDNLKSNTK 580
Query: 92 SHMSMFMMLRKMANHPLGLRYYFQ--ENTLREIA 123
H+ + + A H + + E LR +A
Sbjct: 581 EHLDKYADVDGSATHDINAVDFDNDDEEALRRMA 614
>UNIPROTKB|F1MFS2 [details] [associations]
symbol:CHD1L "Chromodomain-helicase-DNA-binding protein
1-like" species:9913 "Bos taurus" [GO:0006974 "response to DNA
damage stimulus" evidence=IEA] [GO:0006338 "chromatin remodeling"
evidence=IEA] [GO:0005886 "plasma membrane" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0003677
"DNA binding" evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR002464 Pfam:PF00176 Pfam:PF00271 PROSITE:PS00690
PROSITE:PS51194 SMART:SM00490 GO:GO:0005886 GO:GO:0005524
GO:GO:0005634 GO:GO:0005737 GO:GO:0003677 GO:GO:0006974
GO:GO:0006338 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
InterPro:IPR002589 PROSITE:PS51154 GO:GO:0008026 IPI:IPI00710168
OMA:TCQTIAL GeneTree:ENSGT00670000098110 EMBL:DAAA02007335
Ensembl:ENSBTAT00000027762 Uniprot:F1MFS2
Length = 896
Score = 148 (57.2 bits), Expect = 9.6e-18, Sum P(2) = 9.6e-18
Identities = 30/67 (44%), Positives = 44/67 (65%)
Query: 167 YKVPDDLVVESGKLKKLDEILPDLKKNGHRVLIFSQFIFVLDILGHYMDIRGWRHLRLDG 226
+++ D L+ SGKL LD++L L GHRVL+FSQ +LDIL Y+D RG+ + R+DG
Sbjct: 338 FEIGDHLIEASGKLHLLDKLLAFLYSKGHRVLLFSQMTQMLDILQDYLDYRGYSYERVDG 397
Query: 227 ATQVSSR 233
+ + R
Sbjct: 398 SVRGEER 404
Score = 135 (52.6 bits), Expect = 9.6e-18, Sum P(2) = 9.6e-18
Identities = 41/122 (33%), Positives = 61/122 (50%)
Query: 10 RYEDKRKEQATFEVEQVDQAKRIISPFMLRRLKKDVLTELPKKTALVIKVPMIPSQAEKY 69
RY+D KE E + +++ PF+LRR+K +V TELP+KT +VI M Q + Y
Sbjct: 238 RYQDIEKES-----ESASELYKLLQPFLLRRVKAEVATELPRKTEVVIYHGMSALQKKYY 292
Query: 70 RG-LMEDFKKTANPEGSNRSNEISHMSMFMMLRKMANHPLGLRYYFQ--ENTLREIADCL 126
+ LM+D N + ++ ++ LRK +HP Y F E EI D L
Sbjct: 293 KAILMKDLDAFEN----EMAKKVKLQNVLSQLRKCVDHP----YLFDGVEPEPFEIGDHL 344
Query: 127 VE 128
+E
Sbjct: 345 IE 346
>UNIPROTKB|Q3B7N1 [details] [associations]
symbol:CHD1L "Chromodomain-helicase-DNA-binding protein
1-like" species:9913 "Bos taurus" [GO:0006200 "ATP catabolic
process" evidence=ISS] [GO:0005634 "nucleus" evidence=ISS]
[GO:0006974 "response to DNA damage stimulus" evidence=ISS]
[GO:0016887 "ATPase activity" evidence=ISS] [GO:0006338 "chromatin
remodeling" evidence=ISS] [GO:0000166 "nucleotide binding"
evidence=ISS] [GO:0006281 "DNA repair" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001650 InterPro:IPR002464
Pfam:PF00176 Pfam:PF00271 PROSITE:PS00690 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0005634 GO:GO:0000166
GO:GO:0003677 GO:GO:0006281 GO:GO:0006974 GO:GO:0016887
GO:GO:0006338 HSSP:Q97XQ5 eggNOG:COG0553 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 InterPro:IPR002589 PROSITE:PS51154
GO:GO:0008026 EMBL:BC107534 IPI:IPI00710168 RefSeq:NP_001032909.1
UniGene:Bt.18335 ProteinModelPortal:Q3B7N1 PRIDE:Q3B7N1
GeneID:524787 KEGG:bta:524787 CTD:9557 HOGENOM:HOG000030789
HOVERGEN:HBG077542 InParanoid:Q3B7N1 OrthoDB:EOG4SXNBV
NextBio:20874039 Uniprot:Q3B7N1
Length = 897
Score = 148 (57.2 bits), Expect = 9.6e-18, Sum P(2) = 9.6e-18
Identities = 30/67 (44%), Positives = 44/67 (65%)
Query: 167 YKVPDDLVVESGKLKKLDEILPDLKKNGHRVLIFSQFIFVLDILGHYMDIRGWRHLRLDG 226
+++ D L+ SGKL LD++L L GHRVL+FSQ +LDIL Y+D RG+ + R+DG
Sbjct: 338 FEIGDHLIEASGKLHLLDKLLAFLYSKGHRVLLFSQMTQMLDILQDYLDYRGYSYERVDG 397
Query: 227 ATQVSSR 233
+ + R
Sbjct: 398 SVRGEER 404
Score = 135 (52.6 bits), Expect = 9.6e-18, Sum P(2) = 9.6e-18
Identities = 41/122 (33%), Positives = 61/122 (50%)
Query: 10 RYEDKRKEQATFEVEQVDQAKRIISPFMLRRLKKDVLTELPKKTALVIKVPMIPSQAEKY 69
RY+D KE E + +++ PF+LRR+K +V TELP+KT +VI M Q + Y
Sbjct: 238 RYQDIEKES-----ESASELYKLLQPFLLRRVKAEVATELPRKTEVVIYHGMSALQKKYY 292
Query: 70 RG-LMEDFKKTANPEGSNRSNEISHMSMFMMLRKMANHPLGLRYYFQ--ENTLREIADCL 126
+ LM+D N + ++ ++ LRK +HP Y F E EI D L
Sbjct: 293 KAILMKDLDAFEN----ETAKKVKLQNVLSQLRKCVDHP----YLFDGVEPEPFEIGDHL 344
Query: 127 VE 128
+E
Sbjct: 345 IE 346
>FB|FBgn0086613 [details] [associations]
symbol:Ino80 "Ino80" species:7227 "Drosophila melanogaster"
[GO:0004386 "helicase activity" evidence=ISS] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IDA]
[GO:0031011 "Ino80 complex" evidence=IDA] [GO:0005700 "polytene
chromosome" evidence=IDA] [GO:0000975 "regulatory region DNA
binding" evidence=IDA] [GO:0010468 "regulation of gene expression"
evidence=IMP] [GO:0000790 "nuclear chromatin" evidence=IDA]
InterPro:IPR000330 InterPro:IPR001650 InterPro:IPR020838
Pfam:PF00176 Pfam:PF00271 Pfam:PF13892 PROSITE:PS51194
PROSITE:PS51413 SMART:SM00490 EMBL:AE014297 GO:GO:0005524
GO:GO:0006355 GO:GO:0006281 GO:GO:0006351 GO:GO:0016887
GO:GO:0006338 GO:GO:0031011 GO:GO:0006310 GO:GO:0005700
GO:GO:0010468 HSSP:Q97XQ5 eggNOG:COG0553 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0003678 GO:GO:0000975 KO:K11665
EMBL:AY069786 RefSeq:NP_732413.1 UniGene:Dm.33518
ProteinModelPortal:Q9VDY1 SMR:Q9VDY1 IntAct:Q9VDY1 STRING:Q9VDY1
PaxDb:Q9VDY1 EnsemblMetazoa:FBtr0083771 GeneID:42314
KEGG:dme:Dmel_CG31212 UCSC:CG31212-RA CTD:54617 FlyBase:FBgn0086613
GeneTree:ENSGT00680000100052 InParanoid:Q9VDY1 OMA:NTMAEVR
OrthoDB:EOG4SQVBH PhylomeDB:Q9VDY1 ChiTaRS:INO80 GenomeRNAi:42314
NextBio:828189 Bgee:Q9VDY1 Uniprot:Q9VDY1
Length = 1638
Score = 156 (60.0 bits), Expect = 1.1e-17, Sum P(2) = 1.1e-17
Identities = 33/67 (49%), Positives = 48/67 (71%)
Query: 169 VPDD--LVVESGKLKKLDEILPDLKKNGHRVLIFSQFIFVLDILGHYMDIRGWRHLRLDG 226
VPD L+ ++GKL LD +L LK NGHRVLI+SQ ++D+L YM R R++RLDG
Sbjct: 1145 VPDKETLITDAGKLFVLDNLLTRLKANGHRVLIYSQMTKMIDLLEEYMWHRKHRYMRLDG 1204
Query: 227 ATQVSSR 233
++++S+R
Sbjct: 1205 SSKISAR 1211
Score = 129 (50.5 bits), Expect = 1.1e-17, Sum P(2) = 1.1e-17
Identities = 33/103 (32%), Positives = 54/103 (52%)
Query: 12 EDKRKEQATFEVEQVDQAKRIISPFMLRRLKKDVLTELPKKTALVIKVPMIPSQAEKYRG 71
E + + + +Q+ + I+ PFMLRR+KKDV EL K +++ P+ Q YR
Sbjct: 735 ESHAENKTGIDEKQISRLHMILKPFMLRRIKKDVENELSDKIEIMVYCPLTIRQKLLYRA 794
Query: 72 L-----MEDFKK-TANPEGSNRSNEISH-MSMFMMLRKMANHP 107
L +ED T+ ++ S+ S+ M++ M RK+ NHP
Sbjct: 795 LKQKIRIEDLLHLTSGSTTTSSSSSASNLMNLVMQFRKVCNHP 837
Score = 45 (20.9 bits), Expect = 5.4e-09, Sum P(2) = 5.4e-09
Identities = 11/32 (34%), Positives = 20/32 (62%)
Query: 121 EIADCLVEDPTYKGTNPQYILEDISWLSD-YD 151
E+ D L + +KGT Y ++ ++WL++ YD
Sbjct: 521 EMKD-LPQPKMFKGTLKGYQIKGMTWLANIYD 551
>MGI|MGI:1915308 [details] [associations]
symbol:Chd1l "chromodomain helicase DNA binding protein
1-like" species:10090 "Mus musculus" [GO:0000166 "nucleotide
binding" evidence=ISO] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=ISO] [GO:0006200 "ATP
catabolic process" evidence=ISO] [GO:0006281 "DNA repair"
evidence=IEA] [GO:0006338 "chromatin remodeling" evidence=ISO]
[GO:0006974 "response to DNA damage stimulus" evidence=ISO]
[GO:0016787 "hydrolase activity" evidence=IEA] [GO:0016887 "ATPase
activity" evidence=ISO] InterPro:IPR000330 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194 SMART:SM00490
MGI:MGI:1915308 GO:GO:0005886 GO:GO:0005524 GO:GO:0005634
GO:GO:0005737 GO:GO:0000166 GO:GO:0003677 GO:GO:0006281
GO:GO:0006974 GO:GO:0016887 GO:GO:0006338 GO:GO:0004386 HSSP:Q97XQ5
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
InterPro:IPR002589 PROSITE:PS51154 CTD:9557 HOGENOM:HOG000030789
HOVERGEN:HBG077542 OrthoDB:EOG4SXNBV OMA:TCQTIAL ChiTaRS:CHD1L
EMBL:AK014473 EMBL:AK165656 EMBL:BC052385 EMBL:BC057567
EMBL:BC062966 IPI:IPI00466859 IPI:IPI00890897 RefSeq:NP_080815.1
UniGene:Mm.41447 ProteinModelPortal:Q9CXF7 SMR:Q9CXF7
DIP:DIP-58953N STRING:Q9CXF7 PhosphoSite:Q9CXF7 PaxDb:Q9CXF7
PRIDE:Q9CXF7 Ensembl:ENSMUST00000029730 GeneID:68058 KEGG:mmu:68058
UCSC:uc008qow.1 UCSC:uc008qox.1 GeneTree:ENSGT00670000098110
InParanoid:Q9CXF7 NextBio:326336 Bgee:Q9CXF7 Genevestigator:Q9CXF7
Uniprot:Q9CXF7
Length = 900
Score = 149 (57.5 bits), Expect = 2.4e-17, Sum P(2) = 2.4e-17
Identities = 31/67 (46%), Positives = 43/67 (64%)
Query: 167 YKVPDDLVVESGKLKKLDEILPDLKKNGHRVLIFSQFIFVLDILGHYMDIRGWRHLRLDG 226
++V + L+ SGKL LD +L L GHRVL+FSQ +LDIL YMD RG+ + R+DG
Sbjct: 330 FEVGEHLIEASGKLHLLDRLLAFLYSGGHRVLLFSQMTHMLDILQDYMDYRGYSYERVDG 389
Query: 227 ATQVSSR 233
+ + R
Sbjct: 390 SVRGEER 396
Score = 130 (50.8 bits), Expect = 2.4e-17, Sum P(2) = 2.4e-17
Identities = 39/122 (31%), Positives = 60/122 (49%)
Query: 10 RYEDKRKEQATFEVEQVDQAKRIISPFMLRRLKKDVLTELPKKTALVIKVPMIPSQAEKY 69
RY+D KE + + R++ PF+LRR+K V TELPKKT +V+ M Q + Y
Sbjct: 230 RYQDIEKES-----KSASELHRLLQPFLLRRVKAQVATELPKKTEVVVYHGMSALQKKYY 284
Query: 70 RG-LMEDFKKTANPEGSNRSNEISHMSMFMMLRKMANHPLGLRYYFQ--ENTLREIADCL 126
+ LM+D N + ++ ++ LRK +HP Y F E E+ + L
Sbjct: 285 KAILMKDLDAFEN----ETAKKVKLQNILTQLRKCVDHP----YLFDGVEPEPFEVGEHL 336
Query: 127 VE 128
+E
Sbjct: 337 IE 338
>MGI|MGI:106209 [details] [associations]
symbol:Hells "helicase, lymphoid specific" species:10090 "Mus
musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0000775 "chromosome, centromeric region" evidence=IDA]
[GO:0001655 "urogenital system development" evidence=IMP]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0003682 "chromatin binding"
evidence=IDA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005721 "centromeric heterochromatin"
evidence=IDA] [GO:0006306 "DNA methylation" evidence=IMP]
[GO:0006342 "chromatin silencing" evidence=IMP] [GO:0006346
"methylation-dependent chromatin silencing" evidence=IMP]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0007049 "cell cycle" evidence=IEA] [GO:0007067
"mitosis" evidence=IEA] [GO:0007275 "multicellular organismal
development" evidence=IMP] [GO:0010216 "maintenance of DNA
methylation" evidence=IMP] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0030098 "lymphocyte differentiation"
evidence=TAS] [GO:0031508 "centromeric heterochromatin assembly"
evidence=IMP] [GO:0043066 "negative regulation of apoptotic
process" evidence=IMP] [GO:0051301 "cell division" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 MGI:MGI:106209 GO:GO:0005524
GO:GO:0005634 GO:GO:0043066 GO:GO:0051301 GO:GO:0007067
GO:GO:0003677 GO:GO:0006351 GO:GO:0003682 GO:GO:0001655
GO:GO:0004386 GO:GO:0005721 HSSP:Q97XQ5 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0031508
GO:GO:0010216 HOGENOM:HOG000172362 OMA:ETFYTAI GO:GO:0006346
GO:GO:0030098 GO:GO:0046651 CTD:3070 HOVERGEN:HBG060049
OrthoDB:EOG4SN1N4 EMBL:U25691 EMBL:AF155210 EMBL:AK013266
EMBL:AK147126 EMBL:BC020056 EMBL:BC100394 IPI:IPI00121431
IPI:IPI00808497 PIR:JC4666 RefSeq:NP_032260.2 UniGene:Mm.392920
UniGene:Mm.486446 UniGene:Mm.57223 ProteinModelPortal:Q60848
SMR:Q60848 DIP:DIP-43735N IntAct:Q60848 MINT:MINT-2521001
STRING:Q60848 PhosphoSite:Q60848 PaxDb:Q60848 PRIDE:Q60848
DNASU:15201 Ensembl:ENSMUST00000025965 GeneID:15201 KEGG:mmu:15201
UCSC:uc008hjt.1 GeneTree:ENSGT00550000075106 InParanoid:Q60848
NextBio:287739 Bgee:Q60848 CleanEx:MM_HELLS Genevestigator:Q60848
GermOnline:ENSMUSG00000025001 Uniprot:Q60848
Length = 821
Score = 161 (61.7 bits), Expect = 2.9e-17, Sum P(3) = 2.9e-17
Identities = 32/68 (47%), Positives = 45/68 (66%)
Query: 166 KYKVPDDLVVESGKLKKLDEILPDLKKNGHRVLIFSQFIFVLDILGHYMDIRGWRHLRLD 225
++K+ ++LV SGK LD +LP+LKK GH+VL+FSQ +LDIL Y +R + RLD
Sbjct: 570 EFKIDEELVTNSGKFLILDRMLPELKKRGHKVLVFSQMTSMLDILMDYCHLRNFIFSRLD 629
Query: 226 GATQVSSR 233
G+ S R
Sbjct: 630 GSMSYSER 637
Score = 92 (37.4 bits), Expect = 2.9e-17, Sum P(3) = 2.9e-17
Identities = 21/55 (38%), Positives = 32/55 (58%)
Query: 31 RIISPFMLRRLKKDVLTELPKKTALVIKVPMIPSQAEKYRGLMEDFKKTANPEGS 85
+I++PF+LRRLK DV E+P K +V+ P+ Q Y ++ + AN GS
Sbjct: 425 QILTPFLLRRLKSDVALEVPPKREVVVYAPLCNKQEIFYTAIVN--RTIANMFGS 477
Score = 48 (22.0 bits), Expect = 2.9e-17, Sum P(3) = 2.9e-17
Identities = 8/18 (44%), Positives = 12/18 (66%)
Query: 95 SMFMMLRKMANHPLGLRY 112
++ M+LRK NHP + Y
Sbjct: 545 NIMMLLRKCCNHPYMIEY 562
Score = 41 (19.5 bits), Expect = 4.6e-12, Sum P(3) = 4.6e-12
Identities = 11/51 (21%), Positives = 25/51 (49%)
Query: 6 EDDARYEDKRKEQATFE-VEQVDQAKRIISPFMLRRLKKDVLTELPKKTAL 55
E+ + D+ + + ++ + + I S F+L ++++ L E KK L
Sbjct: 34 EEAQKSWDRESTEIRYRRLQHLLEKSNIYSKFLLTKMEQQQLEEQKKKEKL 84
>FB|FBgn0020306 [details] [associations]
symbol:dom "domino" species:7227 "Drosophila melanogaster"
[GO:0004386 "helicase activity" evidence=IEA;NAS] [GO:0008283 "cell
proliferation" evidence=NAS] [GO:0016458 "gene silencing"
evidence=IGI] [GO:0008094 "DNA-dependent ATPase activity"
evidence=ISS] [GO:0002165 "instar larval or pupal development"
evidence=IMP] [GO:0006325 "chromatin organization" evidence=IMP]
[GO:0048477 "oogenesis" evidence=IMP] [GO:0005634 "nucleus"
evidence=IC;IDA] [GO:0035207 "negative regulation of hemocyte
proliferation" evidence=TAS] [GO:0030097 "hemopoiesis"
evidence=TAS] [GO:0005524 "ATP binding" evidence=IEA] [GO:0003677
"DNA binding" evidence=IEA] [GO:0000381 "regulation of alternative
mRNA splicing, via spliceosome" evidence=IMP] [GO:0000123 "histone
acetyltransferase complex" evidence=IPI] [GO:0045747 "positive
regulation of Notch signaling pathway" evidence=IGI] [GO:0035222
"wing disc pattern formation" evidence=IGI] [GO:0010629 "negative
regulation of gene expression" evidence=IMP] [GO:0005515 "protein
binding" evidence=IPI] [GO:0070983 "dendrite guidance"
evidence=IMP] [GO:0022008 "neurogenesis" evidence=IMP] [GO:2000637
"positive regulation of gene silencing by miRNA" evidence=IMP]
InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 EMBL:AE013599 GO:GO:0005524
GO:GO:0006355 GO:GO:0003677 GO:GO:0035222 GO:GO:0048477
GO:GO:0016573 GO:GO:0045747 GO:GO:0006351 GO:GO:0007049
GO:GO:0035267 GO:GO:0004386 GO:GO:0030097 GO:GO:0043486
GO:GO:2000637 HSSP:Q97XQ5 eggNOG:COG0553 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0016458 InterPro:IPR017877
PROSITE:PS50090 GO:GO:0070983 InterPro:IPR013999 InterPro:IPR014012
InterPro:IPR006562 Pfam:PF07529 SMART:SM00573 PROSITE:PS51204
GO:GO:0008094 GO:GO:0000381 EMBL:AF076776 EMBL:AF254373
EMBL:AY058653 RefSeq:NP_524833.2 RefSeq:NP_788424.1 UniGene:Dm.7802
ProteinModelPortal:Q9NDJ2 SMR:Q9NDJ2 IntAct:Q9NDJ2 STRING:Q9NDJ2
PaxDb:Q9NDJ2 EnsemblMetazoa:FBtr0071603 GeneID:45655
KEGG:dme:Dmel_CG9696 UCSC:CG9696-RA CTD:45655 FlyBase:FBgn0020306
GeneTree:ENSGT00530000063427 InParanoid:Q9NDJ2 KO:K11320
OMA:TENDASA OrthoDB:EOG4C5B08 PhylomeDB:Q9NDJ2 GenomeRNAi:45655
NextBio:838265 Bgee:Q9NDJ2 GO:GO:0002165 GO:GO:0035207
Uniprot:Q9NDJ2
Length = 3198
Score = 158 (60.7 bits), Expect = 3.5e-17, Sum P(3) = 3.5e-17
Identities = 34/82 (41%), Positives = 52/82 (63%)
Query: 154 QLSLKHKTLDCAKYKVPDDLVVE--SGKLKKLDEILPDLKKNGHRVLIFSQFIFVLDILG 211
+L+L H + K PD +++ GKL+ +D +L LK NGHRVLIF+Q +LD+L
Sbjct: 1632 KLALLHPIISEMTTKFPDPRLIQYDCGKLQTMDRLLRQLKVNGHRVLIFTQMTKMLDVLE 1691
Query: 212 HYMDIRGWRHLRLDGATQVSSR 233
+++ G +LRLDG+T+V R
Sbjct: 1692 AFLNYHGHIYLRLDGSTRVEQR 1713
Score = 129 (50.5 bits), Expect = 3.5e-17, Sum P(3) = 3.5e-17
Identities = 32/83 (38%), Positives = 48/83 (57%)
Query: 26 VDQAKRIISPFMLRRLKKDVLTELPKKTALVIKVPMIPSQAEKYRGLMEDFKKTANP-EG 84
+ + ++I PF+LRRLKK+V ++PKK VI + S ++Y L EDF A E
Sbjct: 1122 ITRLHKVIRPFLLRRLKKEVEKQMPKKYEHVITCRL--SNRQRY--LYEDFMSRAKTRET 1177
Query: 85 SNRSNEISHMSMFMMLRKMANHP 107
N +S +++ M LRK+ NHP
Sbjct: 1178 LQTGNLLSVINVLMQLRKVCNHP 1200
Score = 36 (17.7 bits), Expect = 3.5e-17, Sum P(3) = 3.5e-17
Identities = 10/25 (40%), Positives = 13/25 (52%)
Query: 2 DSDSEDDARYEDKRKEQATFEVEQV 26
+S SEDD K +E A E+V
Sbjct: 663 ESGSEDDEETIAKAEEDAADVKEEV 687
>TAIR|locus:2182978 [details] [associations]
symbol:CHR17 "chromatin remodeling factor17" species:3702
"Arabidopsis thaliana" [GO:0005634 "nucleus" evidence=ISM;IEA]
[GO:0008094 "DNA-dependent ATPase activity" evidence=ISS]
[GO:0005829 "cytosol" evidence=RCA] [GO:0000226 "microtubule
cytoskeleton organization" evidence=RCA] [GO:0000911 "cytokinesis
by cell plate formation" evidence=RCA] [GO:0006259 "DNA metabolic
process" evidence=RCA] [GO:0006261 "DNA-dependent DNA replication"
evidence=RCA] [GO:0006306 "DNA methylation" evidence=RCA]
[GO:0006342 "chromatin silencing" evidence=RCA] [GO:0006346
"methylation-dependent chromatin silencing" evidence=RCA]
[GO:0007126 "meiosis" evidence=RCA] [GO:0008283 "cell
proliferation" evidence=RCA] [GO:0010413 "glucuronoxylan metabolic
process" evidence=RCA] [GO:0016246 "RNA interference" evidence=RCA]
[GO:0016572 "histone phosphorylation" evidence=RCA] [GO:0031047
"gene silencing by RNA" evidence=RCA] [GO:0033044 "regulation of
chromosome organization" evidence=RCA] [GO:0045492 "xylan
biosynthetic process" evidence=RCA] [GO:0051567 "histone H3-K9
methylation" evidence=RCA] [GO:0005515 "protein binding"
evidence=IPI] [GO:0010228 "vegetative to reproductive phase
transition of meristem" evidence=IGI] InterPro:IPR000330
InterPro:IPR001005 InterPro:IPR001650 InterPro:IPR009057
InterPro:IPR015194 InterPro:IPR015195 Pfam:PF00176 Pfam:PF00271
Pfam:PF09110 Pfam:PF09111 PROSITE:PS51194 SMART:SM00490
SMART:SM00717 GO:GO:0005524 EMBL:CP002688 GO:GO:0003677
Gene3D:1.10.10.60 SUPFAM:SSF46689 InterPro:IPR017884
PROSITE:PS51293 GO:GO:0004386 GO:GO:0010228 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0016585 GO:GO:0031491
GO:GO:0043044 KO:K11654 OMA:MQRKWYK SUPFAM:SSF101224
IPI:IPI00547773 RefSeq:NP_850847.1 UniGene:At.19176
ProteinModelPortal:F4JY25 SMR:F4JY25 IntAct:F4JY25 PRIDE:F4JY25
EnsemblPlants:AT5G18620.2 GeneID:831980 KEGG:ath:AT5G18620
PhylomeDB:F4JY25 Uniprot:F4JY25
Length = 1072
Score = 142 (55.0 bits), Expect = 6.7e-17, Sum P(3) = 6.7e-17
Identities = 30/62 (48%), Positives = 40/62 (64%)
Query: 167 YKVPDDLVVESGKLKKLDEILPDLKKNGHRVLIFSQFIFVLDILGHYMDIRGWRHLRLDG 226
Y D LV +GK+ LD++LP LK RVLIFSQ +LDIL Y+ RG+++ R+DG
Sbjct: 484 YTTGDHLVTNAGKMVLLDKLLPKLKDRDSRVLIFSQMTRLLDILEDYLMYRGYQYCRIDG 543
Query: 227 AT 228
T
Sbjct: 544 NT 545
Score = 133 (51.9 bits), Expect = 6.7e-17, Sum P(3) = 6.7e-17
Identities = 33/92 (35%), Positives = 48/92 (52%)
Query: 24 EQVDQAKRIISPFMLRRLKKDVLTELPKKTALVIKVPMIPSQAEKYRGLMEDFKKTANPE 83
E V Q +++ PF+LRRLK DV LP K ++KV M Q + Y+ L++ + N
Sbjct: 393 EVVQQLHKVLRPFLLRRLKSDVEKGLPPKKETILKVGMSQMQKQYYKALLQKDLEVVNGG 452
Query: 84 GSNRSNEISHMSMFMMLRKMANHPLGLRYYFQ 115
G + +++ M LRK NHP Y FQ
Sbjct: 453 GERKRL----LNIAMQLRKCCNHP----YLFQ 476
Score = 40 (19.1 bits), Expect = 6.7e-17, Sum P(3) = 6.7e-17
Identities = 8/30 (26%), Positives = 19/30 (63%)
Query: 2 DSDSEDDARYEDKRKEQATF-EVEQVDQAK 30
+ D ED+ + E ++E+A E++++ + K
Sbjct: 70 EEDEEDEEKAEISKREKARLKEMQKMKKQK 99
Score = 37 (18.1 bits), Expect = 1.4e-16, Sum P(3) = 1.4e-16
Identities = 8/25 (32%), Positives = 18/25 (72%)
Query: 6 EDDARYEDKRKEQATFEVEQVDQAK 30
EDDA +++ +E+A E+ + ++A+
Sbjct: 66 EDDAEEDEEDEEKA--EISKREKAR 88
>RGD|1311935 [details] [associations]
symbol:Chd1l "chromodomain helicase DNA binding protein 1-like"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=ISO] [GO:0003677 "DNA binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=ISO] [GO:0005737
"cytoplasm" evidence=ISO] [GO:0005886 "plasma membrane"
evidence=ISO] [GO:0006200 "ATP catabolic process" evidence=ISO]
[GO:0006338 "chromatin remodeling" evidence=ISO] [GO:0006974
"response to DNA damage stimulus" evidence=ISO] [GO:0016887 "ATPase
activity" evidence=ISO] [GO:0005730 "nucleolus" evidence=ISO]
InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 RGD:1311935 GO:GO:0005886
GO:GO:0005524 GO:GO:0005634 GO:GO:0005737 GO:GO:0003677
GO:GO:0006974 GO:GO:0016887 GO:GO:0006338 GO:GO:0004386
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 InterPro:IPR002589
PROSITE:PS51154 OrthoDB:EOG4SXNBV GeneTree:ENSGT00670000098110
IPI:IPI00560655 Ensembl:ENSRNOT00000043937 UCSC:RGD:1311935
ArrayExpress:D4ACG6 Uniprot:D4ACG6
Length = 903
Score = 149 (57.5 bits), Expect = 7.9e-17, Sum P(2) = 7.9e-17
Identities = 31/67 (46%), Positives = 43/67 (64%)
Query: 167 YKVPDDLVVESGKLKKLDEILPDLKKNGHRVLIFSQFIFVLDILGHYMDIRGWRHLRLDG 226
++V + L+ SGKL LD +L L GHRVL+FSQ +LDIL YMD RG+ + R+DG
Sbjct: 330 FEVGEHLIEASGKLHLLDRLLAFLYSGGHRVLLFSQMTHMLDILQDYMDYRGYSYERVDG 389
Query: 227 ATQVSSR 233
+ + R
Sbjct: 390 SVRGEER 396
Score = 125 (49.1 bits), Expect = 7.9e-17, Sum P(2) = 7.9e-17
Identities = 39/121 (32%), Positives = 59/121 (48%)
Query: 11 YEDKRKEQATFEVEQVDQAKRIISPFMLRRLKKDVLTELPKKTALVIKVPMIPSQAEKYR 70
Y+D KE + + R++ PF+LRR+K V TELPKKT +VI M Q + Y+
Sbjct: 231 YQDIEKES-----KSASELHRLLRPFLLRRVKAQVATELPKKTEVVIYHGMSALQKKYYK 285
Query: 71 G-LMEDFKKTANPEGSNRSNEISHMSMFMMLRKMANHPLGLRYYFQ--ENTLREIADCLV 127
LM+D N + ++ ++ LRK +HP Y F E E+ + L+
Sbjct: 286 AILMKDLDAFEN----ETAKKVKLQNVLTQLRKCVDHP----YLFDGVEPEPFEVGEHLI 337
Query: 128 E 128
E
Sbjct: 338 E 338
>UNIPROTKB|Q9NRZ9 [details] [associations]
symbol:HELLS "Lymphoid-specific helicase" species:9606
"Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0007067 "mitosis" evidence=IEA] [GO:0051301 "cell
division" evidence=IEA] [GO:0001655 "urogenital system development"
evidence=IEA] [GO:0003682 "chromatin binding" evidence=IEA]
[GO:0043066 "negative regulation of apoptotic process"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0005721
"centromeric heterochromatin" evidence=ISS] [GO:0006346
"methylation-dependent chromatin silencing" evidence=ISS]
[GO:0007275 "multicellular organismal development" evidence=ISS]
[GO:0010216 "maintenance of DNA methylation" evidence=ISS]
[GO:0031508 "centromeric heterochromatin assembly" evidence=ISS]
[GO:0000775 "chromosome, centromeric region" evidence=ISS]
[GO:0046651 "lymphocyte proliferation" evidence=ISS]
InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 GO:GO:0007275 GO:GO:0005524
GO:GO:0005634 GO:GO:0051301 GO:GO:0007067 GO:GO:0003677
EMBL:CH471066 GO:GO:0006351 GO:GO:0003682 GO:GO:0001655
GO:GO:0004386 GO:GO:0005721 HSSP:Q97XQ5 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0031508
GO:GO:0010216 GO:GO:0006346 GO:GO:0046651 EMBL:AF155827
EMBL:AB102717 EMBL:AB102718 EMBL:AB102719 EMBL:AB102720
EMBL:AB102721 EMBL:AB102722 EMBL:AK314485 EMBL:AB113249
EMBL:BX538033 EMBL:AL138759 EMBL:BC015477 EMBL:BC029381
EMBL:BC030963 EMBL:BC031004 EMBL:AY007108 EMBL:AB074174
IPI:IPI00010590 IPI:IPI00807418 IPI:IPI00807455 IPI:IPI00807553
IPI:IPI00807574 IPI:IPI00807597 IPI:IPI00807667 IPI:IPI00807698
IPI:IPI00807726 RefSeq:NP_060533.2 UniGene:Hs.655830
ProteinModelPortal:Q9NRZ9 SMR:Q9NRZ9 IntAct:Q9NRZ9 STRING:Q9NRZ9
PhosphoSite:Q9NRZ9 DMDM:74761670 PaxDb:Q9NRZ9 PRIDE:Q9NRZ9
DNASU:3070 Ensembl:ENST00000348459 Ensembl:ENST00000394036
Ensembl:ENST00000394044 Ensembl:ENST00000394045 GeneID:3070
KEGG:hsa:3070 UCSC:uc001kjs.3 UCSC:uc009xul.3 UCSC:uc009xum.3
CTD:3070 GeneCards:GC10P096305 H-InvDB:HIX0017337 HGNC:HGNC:4861
HPA:CAB004491 MIM:603946 neXtProt:NX_Q9NRZ9 PharmGKB:PA35054
HOVERGEN:HBG060049 OrthoDB:EOG4SN1N4 PhylomeDB:Q9NRZ9 ChiTaRS:HELLS
GenomeRNAi:3070 NextBio:12147 ArrayExpress:Q9NRZ9 Bgee:Q9NRZ9
Genevestigator:Q9NRZ9 GermOnline:ENSG00000119969 Uniprot:Q9NRZ9
Length = 838
Score = 216 (81.1 bits), Expect = 1.6e-16, P = 1.6e-16
Identities = 72/217 (33%), Positives = 104/217 (47%)
Query: 31 RIISPFMLRRLKKDVLTELPKKTALVIKVPMIPSQAEKYRGLMEDFKKTANPEGSNRSN- 89
+I++PF+LRRLK DV E+P K +V+ P+ Q Y ++ + AN GS+
Sbjct: 442 QILTPFLLRRLKSDVALEVPPKREVVVYAPLSKKQEIFYTAIVN--RTIANMFGSSEKET 499
Query: 90 -EISHMSM-FMMLRKMANH------PLGLRYYF---QENTLREIADCLVEDPTYKGTNPQ 138
E+S RK N+ P L Q RE A V P N +
Sbjct: 500 IELSPTGRPKRRTRKSINYSKIDDFPNELEKLISQIQPEVDRERAVVEVNIPVESEVNLK 559
Query: 139 YILEDISWLSDYDIHQLSLKHKTLD--CAKYKVPDDLVVESGKLKKLDEILPDLKKNGHR 196
L++I L + L +D ++K+ ++LV SGK LD +LP+LKK GH+
Sbjct: 560 --LQNIMMLLRKCCNHPYLIEYPIDPVTQEFKIDEELVTNSGKFLILDRMLPELKKRGHK 617
Query: 197 VLIFSQFIFVLDILGHYMDIRGWRHLRLDGATQVSSR 233
VL+FSQ +LDIL Y +R + RLDG+ S R
Sbjct: 618 VLLFSQMTSMLDILMDYCHLRDFNFSRLDGSMSYSER 654
>CGD|CAL0001763 [details] [associations]
symbol:orf19.1871 species:5476 "Candida albicans" [GO:0000812
"Swr1 complex" evidence=IEA] [GO:0005198 "structural molecule
activity" evidence=IEA] [GO:0043486 "histone exchange"
evidence=IEA] InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176
Pfam:PF00271 PROSITE:PS00690 PROSITE:PS51194 SMART:SM00490
CGD:CAL0001763 GO:GO:0005524 GO:GO:0005634 GO:GO:0006355
GO:GO:0003677 GO:GO:0006351 GO:GO:0016568 GO:GO:0004386
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
InterPro:IPR014012 InterPro:IPR006562 Pfam:PF07529 PROSITE:PS51204
EMBL:AACQ01000133 EMBL:AACQ01000132 RefSeq:XP_713128.1
RefSeq:XP_713174.1 ProteinModelPortal:Q59U81 STRING:Q59U81
PRIDE:Q59U81 GeneID:3645174 GeneID:3645220 KEGG:cal:CaO19.1871
KEGG:cal:CaO19.9427 KO:K11681 Uniprot:Q59U81
Length = 1641
Score = 157 (60.3 bits), Expect = 2.2e-16, Sum P(2) = 2.2e-16
Identities = 33/77 (42%), Positives = 48/77 (62%)
Query: 159 HKTLDCAKYKVPDDLVVE--SGKLKKLDEILPDLKKNGHRVLIFSQFIFVLDILGHYMDI 216
HK PD +++ GKL+KL +L +L GHR LIF+Q VLDIL +++I
Sbjct: 1345 HKAQVKLSIAFPDKTLLQYDCGKLQKLATLLQELTSQGHRALIFTQMTKVLDILEQFLNI 1404
Query: 217 RGWRHLRLDGATQVSSR 233
G+R++RLDGAT++ R
Sbjct: 1405 HGYRYMRLDGATKIEDR 1421
Score = 115 (45.5 bits), Expect = 2.2e-16, Sum P(2) = 2.2e-16
Identities = 31/103 (30%), Positives = 56/103 (54%)
Query: 6 EDDARYEDKRKEQATFEVEQVDQAKRIISPFMLRRLKKDVLTELPKKTALVIKVPMIPSQ 65
+++ R K E+ V ++ Q ++ P++LRRLKKDV ++P K ++ +
Sbjct: 1041 DENERTTQKMDEETRNTVARLHQ---VLRPYLLRRLKKDVEKQMPGKYEHIVYCRL---- 1093
Query: 66 AEKYRGLMEDFKKTANPEGSNRS-NEISHMSMFMMLRKMANHP 107
+++ R L +DF A + + S N +S ++ M LRK+ NHP
Sbjct: 1094 SKRQRFLYDDFMSRAKTKETLASGNFLSIINCLMQLRKVCNHP 1136
>ZFIN|ZDB-GENE-030131-9923 [details] [associations]
symbol:hells "helicase, lymphoid-specific"
species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0000775
"chromosome, centromeric region" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0045132 "meiotic chromosome segregation"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] InterPro:IPR000330
InterPro:IPR001650 InterPro:IPR011515 Pfam:PF00176 Pfam:PF00271
Pfam:PF07557 PROSITE:PS51194 SMART:SM00490
ZFIN:ZDB-GENE-030131-9923 GO:GO:0005524 GO:GO:0005634 GO:GO:0000775
GO:GO:0003677 GO:GO:0004386 GO:GO:0045132 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 CTD:3070 HOVERGEN:HBG060049
EMBL:AY612850 IPI:IPI00817585 RefSeq:NP_001032178.1
UniGene:Dr.75180 ProteinModelPortal:Q3BDS6 STRING:Q3BDS6
GeneID:553328 KEGG:dre:553328 InParanoid:Q3BDS6 NextBio:20880094
ArrayExpress:Q3BDS6 Uniprot:Q3BDS6
Length = 853
Score = 166 (63.5 bits), Expect = 2.5e-16, Sum P(2) = 2.5e-16
Identities = 33/67 (49%), Positives = 45/67 (67%)
Query: 167 YKVPDDLVVESGKLKKLDEILPDLKKNGHRVLIFSQFIFVLDILGHYMDIRGWRHLRLDG 226
+K+ + LV SGK LD +LP+LKK GH+VLIFSQ +LDIL Y +RG+ + RLDG
Sbjct: 604 FKIDEQLVEASGKFLILDRMLPELKKRGHKVLIFSQMTSILDILMDYCYLRGYEYSRLDG 663
Query: 227 ATQVSSR 233
+ + R
Sbjct: 664 SMSYADR 670
Score = 90 (36.7 bits), Expect = 2.5e-16, Sum P(2) = 2.5e-16
Identities = 17/42 (40%), Positives = 26/42 (61%)
Query: 32 IISPFMLRRLKKDVLTELPKKTALVIKVPMIPSQAEKYRGLM 73
I++PF+LRRLK DV E+P K +V+ P+ Q Y ++
Sbjct: 453 ILTPFLLRRLKSDVTLEVPPKKEIVVYAPLTNKQEAFYMAIV 494
Score = 40 (19.1 bits), Expect = 3.9e-11, Sum P(2) = 3.9e-11
Identities = 18/63 (28%), Positives = 27/63 (42%)
Query: 28 QAKRIISPFMLRRLKKDVLTELPKKTALVIKVPMIPSQAEKYRGLMEDFKKTANPEGSNR 87
+ I S F+L ++++ E KK L K ++ K +G D KKT E R
Sbjct: 92 EKSNIYSKFLLTKMEQQQQEEKLKKERLEKKAAVL-----KQKG--SD-KKTVKVERKKR 143
Query: 88 SNE 90
E
Sbjct: 144 GRE 146
>DICTYBASE|DDB_G0292358 [details] [associations]
symbol:ino80 "CHR group protein" species:44689
"Dictyostelium discoideum" [GO:0016817 "hydrolase activity, acting
on acid anhydrides" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0031011 "Ino80 complex" evidence=ISS]
[GO:0016887 "ATPase activity" evidence=ISS] [GO:0006366
"transcription from RNA polymerase II promoter" evidence=ISS]
[GO:0006338 "chromatin remodeling" evidence=ISS] [GO:0006281 "DNA
repair" evidence=ISS] [GO:0006200 "ATP catabolic process"
evidence=ISS] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR020838 Pfam:PF00176 Pfam:PF00271 Pfam:PF13892
PROSITE:PS51194 PROSITE:PS51413 SMART:SM00490
dictyBase:DDB_G0292358 GO:GO:0005524 GenomeReviews:CM000155_GR
GO:GO:0003677 GO:GO:0006281 GO:GO:0016887 GO:GO:0006338
GO:GO:0006366 GO:GO:0031011 GO:GO:0004386 EMBL:AAFI02000189
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
KO:K11665 RefSeq:XP_629681.1 ProteinModelPortal:Q54DG0
STRING:Q54DG0 PRIDE:Q54DG0 EnsemblProtists:DDB0233012
GeneID:8628597 KEGG:ddi:DDB_G0292358 InParanoid:Q54DG0 OMA:MINILED
ProtClustDB:CLSZ2497087 Uniprot:Q54DG0
Length = 2129
Score = 151 (58.2 bits), Expect = 2.9e-16, Sum P(2) = 2.9e-16
Identities = 29/58 (50%), Positives = 45/58 (77%)
Query: 176 ESGKLKKLDEILPDLKKNGHRVLIFSQFIFVLDILGHYMDIRGWRHLRLDGATQVSSR 233
+SGKL+ LD++L DLK GHRVLI+SQF +++IL +M R +++LRLDG++++ R
Sbjct: 1765 DSGKLQVLDKLLKDLKVGGHRVLIYSQFTKMINILEDFMIFRKYKYLRLDGSSKLDDR 1822
Score = 125 (49.1 bits), Expect = 2.9e-16, Sum P(2) = 2.9e-16
Identities = 30/99 (30%), Positives = 50/99 (50%)
Query: 12 EDKRKEQATFEVEQVDQAKRIISPFMLRRLKKDVLTELPKKTALVIKVPMIPSQAEKYRG 71
E+ Q Q+++ I+ PFMLRR+K+DV E+P KT + + + Q + Y+
Sbjct: 1362 ENHAMSQGGLNEHQLNRLHMILKPFMLRRIKRDVENEMPSKTEVEVYCNLTHRQKKLYQS 1421
Query: 72 LMEDFKKTANPEGSNRSNEISH---MSMFMMLRKMANHP 107
+ + T G++ S + S M+ M RK+ NHP
Sbjct: 1422 IRSNISITELLGGASFSEQGSMKALMNFVMQFRKVCNHP 1460
Score = 46 (21.3 bits), Expect = 4.4e-08, Sum P(2) = 4.4e-08
Identities = 8/38 (21%), Positives = 22/38 (57%)
Query: 2 DSDSEDDARYEDKRKEQATFEVEQVDQAKRIISPFMLR 39
+ S+D+ + E ++KE+ + E + + ++ I +L+
Sbjct: 1058 EESSDDEGKTEQEKKEEEELKSEALKKTQKAIELQLLK 1095
Score = 41 (19.5 bits), Expect = 1.4e-07, Sum P(2) = 1.4e-07
Identities = 19/85 (22%), Positives = 33/85 (38%)
Query: 67 EKYRGLMEDFKKTANPEGSNRSNEISHMSMFMMLRKMANHPLGLRYYFQENTLREIADCL 126
E++ L +D KK + G + SN S + ++ + +Y Q +
Sbjct: 805 EEFERLWKDRKKKKSSNGPSLSNSYSGIKTDQYNQQQQYNQQQQQYQSQNQQQHQ----- 859
Query: 127 VEDPTYKGTNPQYILEDISWLSDYD 151
+ TN Q ILE + W + D
Sbjct: 860 -QQQQQIITN-QSILEKLDWYKEID 882
Score = 40 (19.1 bits), Expect = 1.8e-07, Sum P(2) = 1.8e-07
Identities = 9/30 (30%), Positives = 14/30 (46%)
Query: 2 DSDSEDDARYEDKRKEQATFEVEQVDQAKR 31
D D + R +K + E+V +AKR
Sbjct: 959 DKDEREAKRRAEKEEANQRKREEEVQEAKR 988
Score = 36 (17.7 bits), Expect = 4.6e-07, Sum P(2) = 4.6e-07
Identities = 8/42 (19%), Positives = 20/42 (47%)
Query: 2 DSDSEDDARYEDKRKEQATFEVEQVDQAKRIISPFMLRRLKK 43
+ + +DD + +E+++ + + +Q K+ LKK
Sbjct: 1043 EKNDQDDNESSSEEEEESSDDEGKTEQEKKEEEELKSEALKK 1084
>UNIPROTKB|Q12873 [details] [associations]
symbol:CHD3 "Chromodomain-helicase-DNA-binding protein 3"
species:9606 "Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0016568 "chromatin modification"
evidence=IEA] [GO:0004386 "helicase activity" evidence=NAS]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=NAS] [GO:0005634 "nucleus" evidence=IDA;NAS] [GO:0008270
"zinc ion binding" evidence=NAS] [GO:0005515 "protein binding"
evidence=IPI] [GO:0007051 "spindle organization" evidence=IDA]
[GO:0005813 "centrosome" evidence=IDA] [GO:0005737 "cytoplasm"
evidence=IDA] [GO:0051297 "centrosome organization" evidence=IDA]
[GO:0006357 "regulation of transcription from RNA polymerase II
promoter" evidence=TAS] [GO:0004003 "ATP-dependent DNA helicase
activity" evidence=TAS] [GO:0016581 "NuRD complex" evidence=IDA]
[GO:0005730 "nucleolus" evidence=IDA] [GO:0045111 "intermediate
filament cytoskeleton" evidence=IDA] InterPro:IPR001841
InterPro:IPR009071 InterPro:IPR000330 InterPro:IPR000953
InterPro:IPR001650 InterPro:IPR001965 InterPro:IPR002464
InterPro:IPR012957 InterPro:IPR012958 InterPro:IPR019787
Pfam:PF00176 Pfam:PF00271 Pfam:PF00628 Pfam:PF08073 Pfam:PF08074
PROSITE:PS00690 PROSITE:PS50013 PROSITE:PS50016 PROSITE:PS51194
SMART:SM00184 SMART:SM00249 SMART:SM00298 SMART:SM00490
Pfam:PF00385 GO:GO:0005524 GO:GO:0005737 GO:GO:0005813
EMBL:CH471108 GO:GO:0005730 GO:GO:0051297 GO:GO:0046872
GO:GO:0003677 GO:GO:0008270 GO:GO:0006357 GO:GO:0006351
GO:GO:0016568 Gene3D:1.10.30.10 GO:GO:0045111 Gene3D:3.30.40.10
InterPro:IPR011011 InterPro:IPR013083 SUPFAM:SSF57903 GO:GO:0004003
InterPro:IPR019786 PROSITE:PS01359
Pathway_Interaction_DB:hdac_classi_pathway InterPro:IPR016197
SUPFAM:SSF54160 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0007051 GO:GO:0016581 InterPro:IPR023780
InterPro:IPR023779 PROSITE:PS00598 HOGENOM:HOG000231124
InterPro:IPR009462 InterPro:IPR009463 Pfam:PF06461 Pfam:PF06465
CTD:1107 EMBL:U91543 EMBL:AF006515 EMBL:U08379 IPI:IPI00373870
IPI:IPI00411592 RefSeq:NP_001005271.2 RefSeq:NP_001005273.1
RefSeq:NP_005843.2 UniGene:Hs.25601 ProteinModelPortal:Q12873
SMR:Q12873 DIP:DIP-32496N IntAct:Q12873 MINT:MINT-1185641
STRING:Q12873 PhosphoSite:Q12873 DMDM:88911273 PaxDb:Q12873
PRIDE:Q12873 Ensembl:ENST00000330494 Ensembl:ENST00000358181
GeneID:1107 KEGG:hsa:1107 UCSC:uc002gje.2 UCSC:uc002gjf.2
GeneCards:GC17P007788 H-InvDB:HIX0013516 HGNC:HGNC:1918
HPA:HPA043368 MIM:602120 neXtProt:NX_Q12873 PharmGKB:PA26454
HOVERGEN:HBG005326 KO:K11642 PhylomeDB:Q12873 ChiTaRS:CHD3
GenomeRNAi:1107 NextBio:4590 ArrayExpress:Q12873 Bgee:Q12873
CleanEx:HS_CHD3 Genevestigator:Q12873 GermOnline:ENSG00000170004
Uniprot:Q12873
Length = 2000
Score = 145 (56.1 bits), Expect = 3.3e-16, Sum P(2) = 3.3e-16
Identities = 30/89 (33%), Positives = 52/89 (58%)
Query: 22 EVEQVDQAKRI---ISPFMLRRLKKDVLTELPKKTALVIKVPMIPSQAEKYRGLMEDFKK 78
++ + DQ K++ + P MLRRLK DV +P KT L+++V + P Q + Y+ ++ +
Sbjct: 946 DISKEDQIKKLHDLLGPHMLRRLKADVFKNMPAKTELIVRVELSPMQKKYYKYILTRNFE 1005
Query: 79 TANPEGSNRSNEISHMSMFMMLRKMANHP 107
N G N++S +++ M L+K NHP
Sbjct: 1006 ALNSRGGG--NQVSLLNIMMDLKKCCNHP 1032
Score = 132 (51.5 bits), Expect = 3.3e-16, Sum P(2) = 3.3e-16
Identities = 26/54 (48%), Positives = 38/54 (70%)
Query: 173 LVVESGKLKKLDEILPDLKKNGHRVLIFSQFIFVLDILGHYMDIRGWRHLRLDG 226
L+ SGKL L ++L LK+ GHRVLIFSQ +LD+L ++D G+++ R+DG
Sbjct: 1055 LIKSSGKLMLLQKMLRKLKEQGHRVLIFSQMTKMLDLLEDFLDYEGYKYERIDG 1108
Score = 36 (17.7 bits), Expect = 0.00013, Sum P(2) = 0.00013
Identities = 7/14 (50%), Positives = 9/14 (64%)
Query: 134 GTNPQYILEDISWL 147
GT Y LE ++WL
Sbjct: 734 GTLHMYQLEGLNWL 747
>ASPGD|ASPL0000041040 [details] [associations]
symbol:AN9077 species:162425 "Emericella nidulans"
[GO:0005524 "ATP binding" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0006338 "chromatin remodeling" evidence=IEA] [GO:0000812 "Swr1
complex" evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR002464 Pfam:PF00176 Pfam:PF00271 PROSITE:PS00690
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
GO:GO:0006355 GO:GO:0003677 EMBL:BN001306 GO:GO:0006351
GO:GO:0016568 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 InterPro:IPR014012 InterPro:IPR006562 Pfam:PF07529
PROSITE:PS51204 GO:GO:0008026 EMBL:AACD01000169 KO:K11681
RefSeq:XP_682346.1 STRING:Q5ARK3 GeneID:2868023 KEGG:ani:AN9077.2
HOGENOM:HOG000186095 OMA:YGNQEER OrthoDB:EOG49S9FK Uniprot:Q5ARK3
Length = 1698
Score = 162 (62.1 bits), Expect = 3.3e-16, Sum P(2) = 3.3e-16
Identities = 33/66 (50%), Positives = 46/66 (69%)
Query: 170 PDD--LVVESGKLKKLDEILPDLKKNGHRVLIFSQFIFVLDILGHYMDIRGWRHLRLDGA 227
PD L + GKL++LD++L DLK GHR LIF+Q +LD+L +++I G R+LRLDG
Sbjct: 1363 PDKRLLQYDCGKLQRLDKLLRDLKAGGHRALIFTQMTKMLDVLEQFLNIHGHRYLRLDGT 1422
Query: 228 TQVSSR 233
T+V R
Sbjct: 1423 TKVEQR 1428
Score = 105 (42.0 bits), Expect = 3.3e-16, Sum P(2) = 3.3e-16
Identities = 29/93 (31%), Positives = 45/93 (48%)
Query: 16 KEQATFEVEQV-DQAKRIISPFMLRRLKKDVLTELPKKTALVIKVPMIPSQAEKYRGLME 74
+E E +QV + ++ P++LRRLK DV ++P K V+ + Q Y G M
Sbjct: 1034 RETMDDEAKQVVTKLHTVLRPYILRRLKADVEKQMPGKYEHVVYCRLSKRQRYLYDGFMS 1093
Query: 75 DFKKTANPEGSNRSNEISHMSMFMMLRKMANHP 107
+ E N +S ++ M LRK+ NHP
Sbjct: 1094 ---RAQTKETLASGNYLSIINCLMQLRKVCNHP 1123
>RGD|1311923 [details] [associations]
symbol:Chd3 "chromodomain helicase DNA binding protein 3"
species:10116 "Rattus norvegicus" [GO:0005634 "nucleus"
evidence=ISO] [GO:0005730 "nucleolus" evidence=ISO] [GO:0005737
"cytoplasm" evidence=ISO] [GO:0005813 "centrosome" evidence=ISO]
[GO:0006333 "chromatin assembly or disassembly" evidence=ISO]
[GO:0007051 "spindle organization" evidence=ISO] [GO:0016581 "NuRD
complex" evidence=ISO] [GO:0045111 "intermediate filament
cytoskeleton" evidence=ISO] [GO:0051297 "centrosome organization"
evidence=ISO] InterPro:IPR001841 InterPro:IPR009071
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001650
InterPro:IPR001965 InterPro:IPR002464 InterPro:IPR012957
InterPro:IPR012958 InterPro:IPR019787 Pfam:PF00176 Pfam:PF00271
Pfam:PF00628 Pfam:PF08073 Pfam:PF08074 PROSITE:PS00690
PROSITE:PS50013 PROSITE:PS50016 PROSITE:PS51194 SMART:SM00184
SMART:SM00249 SMART:SM00298 SMART:SM00490 Pfam:PF00385 RGD:1311923
GO:GO:0005524 GO:GO:0005634 GO:GO:0006355 GO:GO:0046872
GO:GO:0003677 GO:GO:0008270 Gene3D:1.10.30.10 Gene3D:3.30.40.10
InterPro:IPR011011 InterPro:IPR013083 SUPFAM:SSF57903
InterPro:IPR019786 PROSITE:PS01359 InterPro:IPR016197
SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR023780 InterPro:IPR009462
InterPro:IPR009463 Pfam:PF06461 Pfam:PF06465 HOVERGEN:HBG005326
IPI:IPI00369880 EMBL:AY903245 EMBL:AY903246 UniGene:Rn.232095
STRING:Q2KML1 UCSC:RGD:1311923 Genevestigator:Q2KML1 Uniprot:Q2KML1
Length = 1925
Score = 145 (56.1 bits), Expect = 3.9e-16, Sum P(2) = 3.9e-16
Identities = 30/89 (33%), Positives = 52/89 (58%)
Query: 22 EVEQVDQAKRI---ISPFMLRRLKKDVLTELPKKTALVIKVPMIPSQAEKYRGLMEDFKK 78
++ + DQ K++ + P MLRRLK DV +P KT L+++V + P Q + Y+ ++ +
Sbjct: 902 DISKEDQIKKLHDLLGPHMLRRLKADVFKNMPAKTELIVRVELSPMQKKYYKYILTRNFE 961
Query: 79 TANPEGSNRSNEISHMSMFMMLRKMANHP 107
N G N++S +++ M L+K NHP
Sbjct: 962 ALNSRGGG--NQVSLLNIMMDLKKCCNHP 988
Score = 131 (51.2 bits), Expect = 3.9e-16, Sum P(2) = 3.9e-16
Identities = 26/54 (48%), Positives = 38/54 (70%)
Query: 173 LVVESGKLKKLDEILPDLKKNGHRVLIFSQFIFVLDILGHYMDIRGWRHLRLDG 226
L+ SGKL L ++L LK+ GHRVLIFSQ +LD+L ++D G+++ R+DG
Sbjct: 1011 LIKSSGKLLLLQKMLRKLKEQGHRVLIFSQMTKMLDLLEDFLDYEGYKYERIDG 1064
Score = 36 (17.7 bits), Expect = 0.00016, Sum P(2) = 0.00016
Identities = 7/14 (50%), Positives = 9/14 (64%)
Query: 134 GTNPQYILEDISWL 147
GT Y LE ++WL
Sbjct: 690 GTLHMYQLEGLNWL 703
>UNIPROTKB|F1N544 [details] [associations]
symbol:CHD3 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0045111 "intermediate filament cytoskeleton"
evidence=IEA] [GO:0016581 "NuRD complex" evidence=IEA] [GO:0006333
"chromatin assembly or disassembly" evidence=IEA] [GO:0005730
"nucleolus" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR001841 InterPro:IPR009071 InterPro:IPR000330
InterPro:IPR000953 InterPro:IPR001650 InterPro:IPR001965
InterPro:IPR002464 InterPro:IPR012957 InterPro:IPR012958
InterPro:IPR019787 Pfam:PF00176 Pfam:PF00271 Pfam:PF00628
Pfam:PF08073 Pfam:PF08074 PROSITE:PS00690 PROSITE:PS50013
PROSITE:PS50016 PROSITE:PS51194 SMART:SM00184 SMART:SM00249
SMART:SM00298 SMART:SM00490 Pfam:PF00385 GO:GO:0005524
GO:GO:0006355 GO:GO:0046872 GO:GO:0003677 GO:GO:0008270
Gene3D:1.10.30.10 GO:GO:0006333 Gene3D:3.30.40.10
InterPro:IPR011011 InterPro:IPR013083 SUPFAM:SSF57903
InterPro:IPR019786 PROSITE:PS01359 InterPro:IPR016197
SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 GO:GO:0016581 InterPro:IPR023780
GeneTree:ENSGT00560000076896 InterPro:IPR009462 InterPro:IPR009463
Pfam:PF06461 Pfam:PF06465 OMA:EPEPGYR EMBL:DAAA02048806
IPI:IPI00716282 Ensembl:ENSBTAT00000019119 ArrayExpress:F1N544
Uniprot:F1N544
Length = 1998
Score = 145 (56.1 bits), Expect = 4.2e-16, Sum P(2) = 4.2e-16
Identities = 30/89 (33%), Positives = 52/89 (58%)
Query: 22 EVEQVDQAKRI---ISPFMLRRLKKDVLTELPKKTALVIKVPMIPSQAEKYRGLMEDFKK 78
++ + DQ K++ + P MLRRLK DV +P KT L+++V + P Q + Y+ ++ +
Sbjct: 942 DISKEDQIKKLHDLLGPHMLRRLKADVFKNMPAKTELIVRVELSPMQKKYYKYILTRNFE 1001
Query: 79 TANPEGSNRSNEISHMSMFMMLRKMANHP 107
N G N++S +++ M L+K NHP
Sbjct: 1002 ALNSRGGG--NQVSLLNIMMDLKKCCNHP 1028
Score = 131 (51.2 bits), Expect = 4.2e-16, Sum P(2) = 4.2e-16
Identities = 26/54 (48%), Positives = 38/54 (70%)
Query: 173 LVVESGKLKKLDEILPDLKKNGHRVLIFSQFIFVLDILGHYMDIRGWRHLRLDG 226
L+ SGKL L ++L LK+ GHRVLIFSQ +LD+L ++D G+++ R+DG
Sbjct: 1051 LIKASGKLMLLQKMLRKLKEQGHRVLIFSQMTKMLDLLEDFLDYEGYKYERIDG 1104
Score = 36 (17.7 bits), Expect = 0.00017, Sum P(2) = 0.00017
Identities = 7/14 (50%), Positives = 9/14 (64%)
Query: 134 GTNPQYILEDISWL 147
GT Y LE ++WL
Sbjct: 730 GTLHMYQLEGLNWL 743
>UNIPROTKB|E2RTI2 [details] [associations]
symbol:CHD3 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0045111 "intermediate filament cytoskeleton"
evidence=IEA] [GO:0016581 "NuRD complex" evidence=IEA] [GO:0006333
"chromatin assembly or disassembly" evidence=IEA] [GO:0005730
"nucleolus" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR001841 InterPro:IPR009071 InterPro:IPR000330
InterPro:IPR000953 InterPro:IPR001650 InterPro:IPR001965
InterPro:IPR002464 InterPro:IPR012957 InterPro:IPR012958
InterPro:IPR019787 Pfam:PF00176 Pfam:PF00271 Pfam:PF00628
Pfam:PF08073 Pfam:PF08074 PROSITE:PS00690 PROSITE:PS50013
PROSITE:PS50016 PROSITE:PS51194 SMART:SM00184 SMART:SM00249
SMART:SM00298 SMART:SM00490 Pfam:PF00385 GO:GO:0005524
GO:GO:0006355 GO:GO:0046872 GO:GO:0003677 GO:GO:0008270
Gene3D:1.10.30.10 GO:GO:0006333 Gene3D:3.30.40.10
InterPro:IPR011011 InterPro:IPR013083 SUPFAM:SSF57903
InterPro:IPR019786 PROSITE:PS01359 InterPro:IPR016197
SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 GO:GO:0016581 InterPro:IPR023780
GeneTree:ENSGT00560000076896 InterPro:IPR009462 InterPro:IPR009463
Pfam:PF06461 Pfam:PF06465 OMA:EPEPGYR EMBL:AAEX03003635
EMBL:AAEX03003636 Ensembl:ENSCAFT00000026729 Uniprot:E2RTI2
Length = 1998
Score = 145 (56.1 bits), Expect = 4.2e-16, Sum P(2) = 4.2e-16
Identities = 30/89 (33%), Positives = 52/89 (58%)
Query: 22 EVEQVDQAKRI---ISPFMLRRLKKDVLTELPKKTALVIKVPMIPSQAEKYRGLMEDFKK 78
++ + DQ K++ + P MLRRLK DV +P KT L+++V + P Q + Y+ ++ +
Sbjct: 944 DISKEDQIKKLHDLLGPHMLRRLKADVFKNMPAKTELIVRVELSPMQKKYYKYILTRNFE 1003
Query: 79 TANPEGSNRSNEISHMSMFMMLRKMANHP 107
N G N++S +++ M L+K NHP
Sbjct: 1004 ALNSRGGG--NQVSLLNIMMDLKKCCNHP 1030
Score = 131 (51.2 bits), Expect = 4.2e-16, Sum P(2) = 4.2e-16
Identities = 26/54 (48%), Positives = 38/54 (70%)
Query: 173 LVVESGKLKKLDEILPDLKKNGHRVLIFSQFIFVLDILGHYMDIRGWRHLRLDG 226
L+ SGKL L ++L LK+ GHRVLIFSQ +LD+L ++D G+++ R+DG
Sbjct: 1053 LIKASGKLMLLQKMLRKLKEQGHRVLIFSQMTKMLDLLEDFLDYEGYKYERIDG 1106
Score = 36 (17.7 bits), Expect = 0.00017, Sum P(2) = 0.00017
Identities = 7/14 (50%), Positives = 9/14 (64%)
Query: 134 GTNPQYILEDISWL 147
GT Y LE ++WL
Sbjct: 732 GTLHMYQLEGLNWL 745
>UNIPROTKB|F1ST12 [details] [associations]
symbol:CHD3 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0045111 "intermediate filament cytoskeleton"
evidence=IEA] [GO:0016581 "NuRD complex" evidence=IEA] [GO:0006333
"chromatin assembly or disassembly" evidence=IEA] [GO:0005730
"nucleolus" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR001841 InterPro:IPR009071 InterPro:IPR000330
InterPro:IPR000953 InterPro:IPR001650 InterPro:IPR001965
InterPro:IPR002464 InterPro:IPR012957 InterPro:IPR012958
InterPro:IPR019787 Pfam:PF00176 Pfam:PF00271 Pfam:PF00628
Pfam:PF08073 Pfam:PF08074 PROSITE:PS00690 PROSITE:PS50013
PROSITE:PS50016 PROSITE:PS51194 SMART:SM00184 SMART:SM00249
SMART:SM00298 SMART:SM00490 Pfam:PF00385 GO:GO:0005524
GO:GO:0006355 GO:GO:0046872 GO:GO:0003677 GO:GO:0008270
Gene3D:1.10.30.10 GO:GO:0006333 Gene3D:3.30.40.10
InterPro:IPR011011 InterPro:IPR013083 SUPFAM:SSF57903
InterPro:IPR019786 PROSITE:PS01359 InterPro:IPR016197
SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 GO:GO:0016581 InterPro:IPR023780
GeneTree:ENSGT00560000076896 InterPro:IPR009462 InterPro:IPR009463
Pfam:PF06461 Pfam:PF06465 CTD:1107 KO:K11642 OMA:EPEPGYR
EMBL:CU972380 RefSeq:XP_003132000.1 UniGene:Ssc.1663
Ensembl:ENSSSCT00000019548 GeneID:100188906 KEGG:ssc:100188906
Uniprot:F1ST12
Length = 2002
Score = 145 (56.1 bits), Expect = 4.2e-16, Sum P(2) = 4.2e-16
Identities = 30/89 (33%), Positives = 52/89 (58%)
Query: 22 EVEQVDQAKRI---ISPFMLRRLKKDVLTELPKKTALVIKVPMIPSQAEKYRGLMEDFKK 78
++ + DQ K++ + P MLRRLK DV +P KT L+++V + P Q + Y+ ++ +
Sbjct: 946 DISKEDQIKKLHDLLGPHMLRRLKADVFKNMPAKTELIVRVELSPMQKKYYKYILTRNFE 1005
Query: 79 TANPEGSNRSNEISHMSMFMMLRKMANHP 107
N G N++S +++ M L+K NHP
Sbjct: 1006 ALNSRGGG--NQVSLLNIMMDLKKCCNHP 1032
Score = 131 (51.2 bits), Expect = 4.2e-16, Sum P(2) = 4.2e-16
Identities = 26/54 (48%), Positives = 38/54 (70%)
Query: 173 LVVESGKLKKLDEILPDLKKNGHRVLIFSQFIFVLDILGHYMDIRGWRHLRLDG 226
L+ SGKL L ++L LK+ GHRVLIFSQ +LD+L ++D G+++ R+DG
Sbjct: 1055 LIKASGKLMLLQKMLRKLKEQGHRVLIFSQMTKMLDLLEDFLDYEGYKYERIDG 1108
Score = 36 (17.7 bits), Expect = 0.00017, Sum P(2) = 0.00017
Identities = 7/14 (50%), Positives = 9/14 (64%)
Query: 134 GTNPQYILEDISWL 147
GT Y LE ++WL
Sbjct: 734 GTLHMYQLEGLNWL 747
>UNIPROTKB|F1LPP7 [details] [associations]
symbol:Chd3 "Protein Chd3" species:10116 "Rattus
norvegicus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
InterPro:IPR001841 InterPro:IPR009071 InterPro:IPR000330
InterPro:IPR000953 InterPro:IPR001650 InterPro:IPR001965
InterPro:IPR002464 InterPro:IPR012957 InterPro:IPR012958
InterPro:IPR019787 Pfam:PF00176 Pfam:PF00271 Pfam:PF00628
Pfam:PF08073 Pfam:PF08074 PROSITE:PS00690 PROSITE:PS50013
PROSITE:PS50016 PROSITE:PS51194 SMART:SM00184 SMART:SM00249
SMART:SM00298 SMART:SM00490 Pfam:PF00385 RGD:1311923 GO:GO:0005524
GO:GO:0005634 GO:GO:0006355 GO:GO:0046872 GO:GO:0003677
GO:GO:0008270 Gene3D:1.10.30.10 Gene3D:3.30.40.10
InterPro:IPR011011 InterPro:IPR013083 SUPFAM:SSF57903
InterPro:IPR019786 PROSITE:PS01359 InterPro:IPR016197
SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR023780 InterPro:IPR009462
InterPro:IPR009463 Pfam:PF06461 Pfam:PF06465 IPI:IPI00369880
Ensembl:ENSRNOT00000057060 Uniprot:F1LPP7
Length = 2020
Score = 145 (56.1 bits), Expect = 4.3e-16, Sum P(2) = 4.3e-16
Identities = 30/89 (33%), Positives = 52/89 (58%)
Query: 22 EVEQVDQAKRI---ISPFMLRRLKKDVLTELPKKTALVIKVPMIPSQAEKYRGLMEDFKK 78
++ + DQ K++ + P MLRRLK DV +P KT L+++V + P Q + Y+ ++ +
Sbjct: 997 DISKEDQIKKLHDLLGPHMLRRLKADVFKNMPAKTELIVRVELSPMQKKYYKYILTRNFE 1056
Query: 79 TANPEGSNRSNEISHMSMFMMLRKMANHP 107
N G N++S +++ M L+K NHP
Sbjct: 1057 ALNSRGGG--NQVSLLNIMMDLKKCCNHP 1083
Score = 131 (51.2 bits), Expect = 4.3e-16, Sum P(2) = 4.3e-16
Identities = 26/54 (48%), Positives = 38/54 (70%)
Query: 173 LVVESGKLKKLDEILPDLKKNGHRVLIFSQFIFVLDILGHYMDIRGWRHLRLDG 226
L+ SGKL L ++L LK+ GHRVLIFSQ +LD+L ++D G+++ R+DG
Sbjct: 1106 LIKSSGKLLLLQKMLRKLKEQGHRVLIFSQMTKMLDLLEDFLDYEGYKYERIDG 1159
Score = 36 (17.7 bits), Expect = 0.00017, Sum P(2) = 0.00017
Identities = 7/14 (50%), Positives = 9/14 (64%)
Query: 134 GTNPQYILEDISWL 147
GT Y LE ++WL
Sbjct: 785 GTLHMYQLEGLNWL 798
>UNIPROTKB|E9PG89 [details] [associations]
symbol:CHD3 "Chromodomain-helicase-DNA-binding protein 3"
species:9606 "Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0008270 "zinc
ion binding" evidence=IEA] [GO:0006333 "chromatin assembly or
disassembly" evidence=IEA] [GO:0016581 "NuRD complex" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0045111 "intermediate filament cytoskeleton"
evidence=IDA] InterPro:IPR001841 InterPro:IPR009071
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001650
InterPro:IPR001965 InterPro:IPR002464 InterPro:IPR012957
InterPro:IPR012958 InterPro:IPR019787 Pfam:PF00176 Pfam:PF00271
Pfam:PF00628 Pfam:PF08073 Pfam:PF08074 PROSITE:PS00690
PROSITE:PS50013 PROSITE:PS50016 PROSITE:PS51194 SMART:SM00184
SMART:SM00249 SMART:SM00298 SMART:SM00490 Pfam:PF00385
GO:GO:0005524 GO:GO:0005730 GO:GO:0006355 GO:GO:0046872
GO:GO:0003677 GO:GO:0008270 Gene3D:1.10.30.10 GO:GO:0045111
GO:GO:0006333 Gene3D:3.30.40.10 InterPro:IPR011011
InterPro:IPR013083 SUPFAM:SSF57903 InterPro:IPR019786
PROSITE:PS01359 InterPro:IPR016197 SUPFAM:SSF54160
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
GO:GO:0016581 InterPro:IPR023780 InterPro:IPR023779 PROSITE:PS00598
InterPro:IPR009462 InterPro:IPR009463 Pfam:PF06461 Pfam:PF06465
CTD:1107 RefSeq:NP_001005271.2 UniGene:Hs.25601 GeneID:1107
KEGG:hsa:1107 HGNC:HGNC:1918 KO:K11642 ChiTaRS:CHD3 GenomeRNAi:1107
NextBio:4590 EMBL:AC104581 IPI:IPI00465222
ProteinModelPortal:E9PG89 SMR:E9PG89 PRIDE:E9PG89
Ensembl:ENST00000380358 UCSC:uc002gjd.2 OMA:EPEPGYR
ArrayExpress:E9PG89 Bgee:E9PG89 Uniprot:E9PG89
Length = 2059
Score = 145 (56.1 bits), Expect = 4.3e-16, Sum P(3) = 4.3e-16
Identities = 30/89 (33%), Positives = 52/89 (58%)
Query: 22 EVEQVDQAKRI---ISPFMLRRLKKDVLTELPKKTALVIKVPMIPSQAEKYRGLMEDFKK 78
++ + DQ K++ + P MLRRLK DV +P KT L+++V + P Q + Y+ ++ +
Sbjct: 1005 DISKEDQIKKLHDLLGPHMLRRLKADVFKNMPAKTELIVRVELSPMQKKYYKYILTRNFE 1064
Query: 79 TANPEGSNRSNEISHMSMFMMLRKMANHP 107
N G N++S +++ M L+K NHP
Sbjct: 1065 ALNSRGGG--NQVSLLNIMMDLKKCCNHP 1091
Score = 132 (51.5 bits), Expect = 4.3e-16, Sum P(3) = 4.3e-16
Identities = 26/54 (48%), Positives = 38/54 (70%)
Query: 173 LVVESGKLKKLDEILPDLKKNGHRVLIFSQFIFVLDILGHYMDIRGWRHLRLDG 226
L+ SGKL L ++L LK+ GHRVLIFSQ +LD+L ++D G+++ R+DG
Sbjct: 1114 LIKSSGKLMLLQKMLRKLKEQGHRVLIFSQMTKMLDLLEDFLDYEGYKYERIDG 1167
Score = 38 (18.4 bits), Expect = 4.3e-16, Sum P(3) = 4.3e-16
Identities = 8/24 (33%), Positives = 14/24 (58%)
Query: 5 SEDDARYEDKRKEQATFEVEQVDQ 28
SE++ E++ E+ EVE D+
Sbjct: 18 SEEEEEEEEEGDEEEEEEVEAADE 41
Score = 36 (17.7 bits), Expect = 0.00013, Sum P(3) = 0.00013
Identities = 7/14 (50%), Positives = 9/14 (64%)
Query: 134 GTNPQYILEDISWL 147
GT Y LE ++WL
Sbjct: 793 GTLHMYQLEGLNWL 806
>UNIPROTKB|F1M7Q0 [details] [associations]
symbol:Chd3 "Protein Chd3" species:10116 "Rattus
norvegicus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
InterPro:IPR001841 InterPro:IPR009071 InterPro:IPR000330
InterPro:IPR000953 InterPro:IPR001650 InterPro:IPR001965
InterPro:IPR002464 InterPro:IPR012957 InterPro:IPR012958
InterPro:IPR019787 Pfam:PF00176 Pfam:PF00271 Pfam:PF00628
Pfam:PF08073 Pfam:PF08074 PROSITE:PS00690 PROSITE:PS50013
PROSITE:PS50016 PROSITE:PS51194 SMART:SM00184 SMART:SM00249
SMART:SM00298 SMART:SM00490 Pfam:PF00385 RGD:1311923 GO:GO:0005524
GO:GO:0005634 GO:GO:0006355 GO:GO:0046872 GO:GO:0003677
GO:GO:0008270 Gene3D:1.10.30.10 Gene3D:3.30.40.10
InterPro:IPR011011 InterPro:IPR013083 SUPFAM:SSF57903
InterPro:IPR019786 PROSITE:PS01359 InterPro:IPR016197
SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR023780 InterPro:IPR009462
InterPro:IPR009463 Pfam:PF06461 Pfam:PF06465 OMA:EPEPGYR
IPI:IPI00959834 Ensembl:ENSRNOT00000012983 Uniprot:F1M7Q0
Length = 2054
Score = 145 (56.1 bits), Expect = 4.4e-16, Sum P(2) = 4.4e-16
Identities = 30/89 (33%), Positives = 52/89 (58%)
Query: 22 EVEQVDQAKRI---ISPFMLRRLKKDVLTELPKKTALVIKVPMIPSQAEKYRGLMEDFKK 78
++ + DQ K++ + P MLRRLK DV +P KT L+++V + P Q + Y+ ++ +
Sbjct: 997 DISKEDQIKKLHDLLGPHMLRRLKADVFKNMPAKTELIVRVELSPMQKKYYKYILTRNFE 1056
Query: 79 TANPEGSNRSNEISHMSMFMMLRKMANHP 107
N G N++S +++ M L+K NHP
Sbjct: 1057 ALNSRGGG--NQVSLLNIMMDLKKCCNHP 1083
Score = 131 (51.2 bits), Expect = 4.4e-16, Sum P(2) = 4.4e-16
Identities = 26/54 (48%), Positives = 38/54 (70%)
Query: 173 LVVESGKLKKLDEILPDLKKNGHRVLIFSQFIFVLDILGHYMDIRGWRHLRLDG 226
L+ SGKL L ++L LK+ GHRVLIFSQ +LD+L ++D G+++ R+DG
Sbjct: 1106 LIKSSGKLLLLQKMLRKLKEQGHRVLIFSQMTKMLDLLEDFLDYEGYKYERIDG 1159
Score = 36 (17.7 bits), Expect = 0.00018, Sum P(2) = 0.00018
Identities = 7/14 (50%), Positives = 9/14 (64%)
Query: 134 GTNPQYILEDISWL 147
GT Y LE ++WL
Sbjct: 785 GTLHMYQLEGLNWL 798
>TAIR|locus:2041644 [details] [associations]
symbol:CHR5 "chromatin remodeling 5" species:3702
"Arabidopsis thaliana" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA;ISS]
[GO:0003682 "chromatin binding" evidence=ISS] [GO:0004386 "helicase
activity" evidence=IEA;ISS] [GO:0005524 "ATP binding"
evidence=IEA;ISS] [GO:0005634 "nucleus" evidence=ISM;IEA]
[GO:0006333 "chromatin assembly or disassembly" evidence=ISS]
[GO:0009506 "plasmodesma" evidence=IDA] InterPro:IPR000330
InterPro:IPR000953 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS50013 PROSITE:PS51194 SMART:SM00298 SMART:SM00490
Pfam:PF00385 GO:GO:0009506 GO:GO:0005524 GO:GO:0005634
EMBL:CP002685 GO:GO:0003677 GO:GO:0004386 InterPro:IPR016197
SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
InterPro:IPR023780 InterPro:IPR025260 Pfam:PF13907 KO:K11367
IPI:IPI00521189 RefSeq:NP_178970.3 UniGene:At.40665 PRIDE:F4IV99
EnsemblPlants:AT2G13370.1 GeneID:815823 KEGG:ath:AT2G13370
OMA:ARNTKSY Uniprot:F4IV99
Length = 1724
Score = 154 (59.3 bits), Expect = 5.6e-16, Sum P(2) = 5.6e-16
Identities = 30/63 (47%), Positives = 45/63 (71%)
Query: 171 DDLVVESGKLKKLDEILPDLKKNGHRVLIFSQFIFVLDILGHYMDIRGWRHLRLDGATQV 230
D +++ SGKL LD++L L++ HRVLIFSQ + +LDIL Y+ +RG++ RLDG+T+
Sbjct: 932 DKIILSSGKLVILDKLLVRLRETKHRVLIFSQMVRMLDILAEYLSLRGFQFQRLDGSTKA 991
Query: 231 SSR 233
R
Sbjct: 992 ELR 994
Score = 116 (45.9 bits), Expect = 5.6e-16, Sum P(2) = 5.6e-16
Identities = 28/97 (28%), Positives = 52/97 (53%)
Query: 11 YEDKRKEQATFEVEQVDQAKRIISPFMLRRLKKDVLTELPKKTALVIKVPMIPSQAEKYR 70
+ + K ++F ++ + P +LRR+ KDV LP K +++V M P Q + Y+
Sbjct: 817 FVENYKNLSSFNESELANLHLELRPHILRRVIKDVEKSLPPKIERILRVEMSPLQKQYYK 876
Query: 71 GLMEDFKKTANPEGSNRSNEISHMSMFMMLRKMANHP 107
++E N +G R N++S +++ + L+K NHP
Sbjct: 877 WILERNFHDLN-KGV-RGNQVSLLNIVVELKKCCNHP 911
Score = 44 (20.5 bits), Expect = 1.6e-08, Sum P(2) = 1.6e-08
Identities = 17/62 (27%), Positives = 32/62 (51%)
Query: 4 DSEDDARYEDKRKEQATFEVEQVDQAKRIISPFMLRRLKKDVLTELPKKTALVIKVPMIP 63
DSED ++++ ++ E E D ++++ L+ + +DV T K T VP++
Sbjct: 397 DSEDIDDGKNRKNQKDDIEEEDADVIEKVLW-HQLKGMGEDVQTN-NKST-----VPVLV 449
Query: 64 SQ 65
SQ
Sbjct: 450 SQ 451
Score = 40 (19.1 bits), Expect = 4.1e-08, Sum P(2) = 4.1e-08
Identities = 13/45 (28%), Positives = 22/45 (48%)
Query: 5 SEDDARYEDKRKEQATFEVEQVDQAKRIISPFMLRRLKKDVLTEL 49
S ++ D KE ++Q Q +RII+ R+ KD L ++
Sbjct: 511 SREEIEVNDVSKEMDLDIIKQNSQVERIIAD----RISKDGLGDV 551
Score = 39 (18.8 bits), Expect = 5.2e-08, Sum P(2) = 5.2e-08
Identities = 8/27 (29%), Positives = 15/27 (55%)
Query: 1 MDSDSEDDARYEDKRKEQATFEVEQVD 27
+DS++E+D E++ E + Q D
Sbjct: 142 LDSENENDNENEEEDNEMNKHQSGQAD 168
>FB|FBgn0023395 [details] [associations]
symbol:Chd3 "Chd3" species:7227 "Drosophila melanogaster"
[GO:0006333 "chromatin assembly or disassembly" evidence=ISS;NAS]
[GO:0004003 "ATP-dependent DNA helicase activity" evidence=ISS]
[GO:0003682 "chromatin binding" evidence=ISS] [GO:0004386 "helicase
activity" evidence=ISS] [GO:0005634 "nucleus" evidence=ISS]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001650
InterPro:IPR001965 InterPro:IPR002464 InterPro:IPR019787
Pfam:PF00176 Pfam:PF00271 Pfam:PF00628 PROSITE:PS00690
PROSITE:PS50013 PROSITE:PS50016 PROSITE:PS51194 SMART:SM00249
SMART:SM00298 SMART:SM00490 Pfam:PF00385 GO:GO:0005524
GO:GO:0005634 EMBL:AE014296 GO:GO:0006355 GO:GO:0046872
GO:GO:0003677 GO:GO:0008270 GO:GO:0006351 GO:GO:0006333
Gene3D:3.30.40.10 InterPro:IPR011011 InterPro:IPR013083
SUPFAM:SSF57903 GO:GO:0004386 InterPro:IPR019786 PROSITE:PS01359
InterPro:IPR016197 SUPFAM:SSF54160 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR023780 PROSITE:PS00598 GeneTree:ENSGT00560000076896
InterPro:IPR009463 Pfam:PF06465 EMBL:AY071503 EMBL:AF007780
RefSeq:NP_649111.1 ProteinModelPortal:O16102 SMR:O16102
DIP:DIP-21327N MINT:MINT-1651376 STRING:O16102 PaxDb:O16102
EnsemblMetazoa:FBtr0074998 GeneID:40111 KEGG:dme:Dmel_CG9594
UCSC:CG9594-RA CTD:1107 FlyBase:FBgn0023395 InParanoid:O16102
OMA:IKWRDLA OrthoDB:EOG4JH9WN PhylomeDB:O16102 GenomeRNAi:40111
NextBio:817050 Bgee:O16102 GermOnline:CG9594 Uniprot:O16102
Length = 892
Score = 147 (56.8 bits), Expect = 7.5e-16, Sum P(2) = 7.5e-16
Identities = 36/102 (35%), Positives = 57/102 (55%)
Query: 10 RYEDKRKEQATF-EVEQVDQAKR---IISPFMLRRLKKDVLTELPKKTALVIKVPMIPSQ 65
++ D + QA F +V + +Q KR I+ P MLRRLK DVL +P K+ +++V + Q
Sbjct: 459 KFNDLQTFQAEFTDVSKEEQVKRLHEILEPHMLRRLKADVLKSMPPKSEFIVRVELSSMQ 518
Query: 66 AEKYRGLMEDFKKTANPEGSNRSNEISHMSMFMMLRKMANHP 107
+ Y+ ++ K N +G R S +++ M LRK NHP
Sbjct: 519 KKFYKHILTKNFKALNQKGGGRV--CSLLNIMMDLRKCCNHP 558
Score = 118 (46.6 bits), Expect = 7.5e-16, Sum P(2) = 7.5e-16
Identities = 23/55 (41%), Positives = 38/55 (69%)
Query: 173 LVVESGKLKKLDEILPDLKKNGHRVLIFSQFIFVLDILGHYMDIRGWRHLRLDGA 227
L SGKL L ++L LK + HRVL+FSQ +L++L H+++ G+++ R+DG+
Sbjct: 581 LTKASGKLDLLSKMLKQLKADNHRVLLFSQMTKMLNVLEHFLEGEGYQYDRIDGS 635
>SGD|S000002742 [details] [associations]
symbol:SWR1 "Swi2/Snf2-related ATPase structural component of
the SWR1 complex" species:4932 "Saccharomyces cerevisiae"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0000812 "Swr1 complex"
evidence=IDA] [GO:0005634 "nucleus" evidence=IEA;IDA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0016787 "hydrolase activity" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0016568 "chromatin modification" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0006338 "chromatin
remodeling" evidence=IGI;IMP;IDA] [GO:0005198 "structural molecule
activity" evidence=IMP] [GO:0043486 "histone exchange"
evidence=IMP] InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176
Pfam:PF00271 PROSITE:PS00690 PROSITE:PS51194 SMART:SM00490
SGD:S000002742 GO:GO:0005524 GO:GO:0006355 GO:GO:0003677
GO:GO:0005198 EMBL:BK006938 GO:GO:0006351 GO:GO:0000812
GO:GO:0004386 GO:GO:0043486 eggNOG:COG0553 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 InterPro:IPR014012 InterPro:IPR006562
Pfam:PF07529 PROSITE:PS51204 GeneTree:ENSGT00530000063427
EMBL:U51032 KO:K11681 HOGENOM:HOG000186095 OrthoDB:EOG49S9FK
PIR:S70099 RefSeq:NP_010621.1 ProteinModelPortal:Q05471 SMR:Q05471
DIP:DIP-2845N IntAct:Q05471 MINT:MINT-1165514 STRING:Q05471
PaxDb:Q05471 EnsemblFungi:YDR334W GeneID:851934 KEGG:sce:YDR334W
CYGD:YDR334w OMA:APGFKVL NextBio:970001 Genevestigator:Q05471
GermOnline:YDR334W Uniprot:Q05471
Length = 1514
Score = 157 (60.3 bits), Expect = 1.2e-15, Sum P(2) = 1.2e-15
Identities = 44/118 (37%), Positives = 70/118 (59%)
Query: 119 LREIADCLVEDPTYKGTNPQY-ILEDISWLSDYDIHQLSLKHKTLDCAKYKVPDD--LVV 175
+R++A L +D + G N + ++++ +S+ +HQL K L A PD L
Sbjct: 1192 MRKLALGLNDDSSV-GENTRLKVMQNCFEVSN-PLHQLQTK---LTIA---FPDKSLLQY 1243
Query: 176 ESGKLKKLDEILPDLKKNGHRVLIFSQFIFVLDILGHYMDIRGWRHLRLDGATQVSSR 233
+ GKL+KL +L LK NGHR LIF+Q VLD+L +++ G+ ++RLDGAT++ R
Sbjct: 1244 DCGKLQKLAILLQQLKDNGHRALIFTQMTKVLDVLEQFLNYHGYLYMRLDGATKIEDR 1301
Score = 107 (42.7 bits), Expect = 1.2e-15, Sum P(2) = 1.2e-15
Identities = 26/83 (31%), Positives = 47/83 (56%)
Query: 26 VDQAKRIISPFMLRRLKKDVLTELPKKTALVIKVPMIPSQAEKYRGLMEDFKKTANPEGS 85
V + +++ P++LRRLK DV ++P K ++ + +++ R L +DF A + +
Sbjct: 918 VAKLHQVLRPYLLRRLKADVEKQMPAKYEHIVYCKL----SKRQRFLYDDFMSRAQTKAT 973
Query: 86 NRS-NEISHMSMFMMLRKMANHP 107
S N +S ++ M LRK+ NHP
Sbjct: 974 LASGNFMSIVNCLMQLRKVCNHP 996
Score = 36 (17.7 bits), Expect = 2.7e-08, Sum P(2) = 2.7e-08
Identities = 10/41 (24%), Positives = 24/41 (58%)
Query: 38 LRRLKKDVLTELPKKTALVIKVPMIPSQAEKYRGLMEDFKK 78
++ +++D T++ ++ V+ VP +PS RG + ++K
Sbjct: 665 IKDVEEDAETKVQEEQLSVVDVP-VPSLL---RGNLRTYQK 701
>ZFIN|ZDB-GENE-041014-72 [details] [associations]
symbol:ino80 "INO80 homolog (S. cerevisiae)"
species:7955 "Danio rerio" [GO:0016817 "hydrolase activity, acting
on acid anhydrides" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR020838 Pfam:PF00176 Pfam:PF00271 Pfam:PF13892
PROSITE:PS51194 PROSITE:PS51413 SMART:SM00490
ZFIN:ZDB-GENE-041014-72 GO:GO:0005524 GO:GO:0003677 GO:GO:0004386
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 EMBL:BX897725
HOGENOM:HOG000231795 HOVERGEN:HBG057875 OMA:KVIRKFW IPI:IPI00516098
UniGene:Dr.84310 ProteinModelPortal:Q5RGG8 STRING:Q5RGG8
InParanoid:Q5RGG8 Uniprot:Q5RGG8
Length = 1582
Score = 152 (58.6 bits), Expect = 1.4e-15, Sum P(2) = 1.4e-15
Identities = 31/68 (45%), Positives = 46/68 (67%)
Query: 168 KVPD--DLVVESGKLKKLDEILPDLKKNGHRVLIFSQFIFVLDILGHYMDIRGWRHLRLD 225
++PD L+ +SGKL LD +L LK GHRVLI+SQ ++D+L YM R ++RLD
Sbjct: 1120 RIPDKESLITDSGKLHTLDLLLTRLKSQGHRVLIYSQMTRMIDLLEEYMVYRKHTYMRLD 1179
Query: 226 GATQVSSR 233
G++++S R
Sbjct: 1180 GSSKISER 1187
Score = 114 (45.2 bits), Expect = 1.4e-15, Sum P(2) = 1.4e-15
Identities = 30/102 (29%), Positives = 49/102 (48%)
Query: 12 EDKRKEQATFEVEQVDQAKRIISPFMLRRLKKDVLTELPKKTALVIKVPMIPSQAEKYRG 71
E + ++ + Q+ + I+ PFMLRR+KKDV EL K ++ + Q Y+
Sbjct: 719 ESHAENKSAIDENQLSRLHMILKPFMLRRIKKDVENELSDKIEILTYCQLTSRQRLLYQA 778
Query: 72 L-----MEDFKKTANPEGSN-RSNEISHMSMFMMLRKMANHP 107
L +ED +++ S S M++ M RK+ NHP
Sbjct: 779 LKNKISIEDLLQSSMGSAQQAHSTTSSLMNLVMQFRKVCNHP 820
>TAIR|locus:2150270 [details] [associations]
symbol:CHR23 "chromatin remodeling 23" species:3702
"Arabidopsis thaliana" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA;ISS]
[GO:0004386 "helicase activity" evidence=IEA;ISS] [GO:0005524 "ATP
binding" evidence=IEA;ISS] [GO:0005634 "nucleus" evidence=ISM]
[GO:0006259 "DNA metabolic process" evidence=RCA] [GO:0007062
"sister chromatid cohesion" evidence=RCA] [GO:0007126 "meiosis"
evidence=RCA] [GO:0009640 "photomorphogenesis" evidence=RCA]
[GO:0010388 "cullin deneddylation" evidence=RCA] [GO:0016567
"protein ubiquitination" evidence=RCA] [GO:0016571 "histone
methylation" evidence=RCA] [GO:0016579 "protein deubiquitination"
evidence=RCA] [GO:0031048 "chromatin silencing by small RNA"
evidence=RCA] [GO:0033044 "regulation of chromosome organization"
evidence=RCA] [GO:0045132 "meiotic chromosome segregation"
evidence=RCA] [GO:0045893 "positive regulation of transcription,
DNA-dependent" evidence=RCA] InterPro:IPR000330 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 EMBL:CP002688 GO:GO:0003677 GO:GO:0004386
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 KO:K11647
OMA:WAPSISA IPI:IPI00536400 RefSeq:NP_197432.2 UniGene:At.43995
ProteinModelPortal:F4K128 SMR:F4K128 PRIDE:F4K128
EnsemblPlants:AT5G19310.1 GeneID:832051 KEGG:ath:AT5G19310
PhylomeDB:F4K128 Uniprot:F4K128
Length = 1064
Score = 152 (58.6 bits), Expect = 1.5e-15, Sum P(2) = 1.5e-15
Identities = 30/66 (45%), Positives = 45/66 (68%)
Query: 168 KVPDDLVVESGKLKKLDEILPDLKKNGHRVLIFSQFIFVLDILGHYMDIRGWRHLRLDGA 227
K P+ +V SGK + LD +LP LKK GHR+L+FSQ ++D+L Y+ + + +LRLDG+
Sbjct: 686 KKPE-IVRASGKFELLDRLLPKLKKAGHRILLFSQMTRLIDLLEIYLSLNDYMYLRLDGS 744
Query: 228 TQVSSR 233
T+ R
Sbjct: 745 TKTDQR 750
Score = 110 (43.8 bits), Expect = 1.5e-15, Sum P(2) = 1.5e-15
Identities = 26/82 (31%), Positives = 44/82 (53%)
Query: 26 VDQAKRIISPFMLRRLKKDVLTELPKKTALVIKVPMIPSQAEKYRGLMEDFKKTANPEGS 85
+++ +I PF+LRR K +V LP KT +++K M Q Y+ + D + G+
Sbjct: 596 INRLHHVIRPFLLRRKKSEVEKFLPGKTQVILKCDMSAWQKLYYKQVT-DVGRVGLHSGN 654
Query: 86 NRSNEISHMSMFMMLRKMANHP 107
+S + +++M LRK NHP
Sbjct: 655 GKSKSLQNLTM--QLRKCCNHP 674
>UNIPROTKB|F1NH79 [details] [associations]
symbol:CHD4 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0005813
"centrosome" evidence=IEA] [GO:0008134 "transcription factor
binding" evidence=IEA] [GO:0016581 "NuRD complex" evidence=IEA]
InterPro:IPR001841 InterPro:IPR000330 InterPro:IPR000953
InterPro:IPR001650 InterPro:IPR001965 InterPro:IPR002464
InterPro:IPR012957 InterPro:IPR012958 InterPro:IPR019787
Pfam:PF00176 Pfam:PF00628 Pfam:PF08073 Pfam:PF08074 PROSITE:PS00690
PROSITE:PS50013 PROSITE:PS50016 PROSITE:PS51194 SMART:SM00184
SMART:SM00249 SMART:SM00298 Pfam:PF00385 GO:GO:0005524
GO:GO:0005737 GO:GO:0005813 GO:GO:0006355 GO:GO:0046872
GO:GO:0003677 GO:GO:0008270 Gene3D:3.30.40.10 InterPro:IPR011011
InterPro:IPR013083 SUPFAM:SSF57903 InterPro:IPR019786
PROSITE:PS01359 InterPro:IPR016197 SUPFAM:SSF54160
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
GO:GO:0016581 InterPro:IPR023780 GeneTree:ENSGT00560000076896
InterPro:IPR009462 InterPro:IPR009463 Pfam:PF06461 Pfam:PF06465
EMBL:AADN02061139 EMBL:AADN02061140 EMBL:AADN02061141
EMBL:AADN02061142 EMBL:AADN02061143 IPI:IPI00598956
Ensembl:ENSGALT00000023339 OMA:DGEHEHQ Uniprot:F1NH79
Length = 1895
Score = 144 (55.7 bits), Expect = 1.7e-15, Sum P(2) = 1.7e-15
Identities = 30/89 (33%), Positives = 52/89 (58%)
Query: 22 EVEQVDQAKRI---ISPFMLRRLKKDVLTELPKKTALVIKVPMIPSQAEKYRGLMEDFKK 78
++ + DQ K++ + P MLRRLK DV +P KT L+++V + P Q + Y+ ++ +
Sbjct: 906 DIAKEDQIKKLHDMLGPHMLRRLKADVFKNMPSKTELIVRVELSPMQKKYYKYILTRNFE 965
Query: 79 TANPEGSNRSNEISHMSMFMMLRKMANHP 107
N G N++S +++ M L+K NHP
Sbjct: 966 ALNARGGG--NQVSLLNVVMDLKKCCNHP 992
Score = 126 (49.4 bits), Expect = 1.7e-15, Sum P(2) = 1.7e-15
Identities = 25/54 (46%), Positives = 39/54 (72%)
Query: 173 LVVESGKLKKLDEILPDLKKNGHRVLIFSQFIFVLDILGHYMDIRGWRHLRLDG 226
L+ SGKL L ++L +LK+ GHRVLIFSQ +LD+L +++ G+++ R+DG
Sbjct: 1015 LIRASGKLLLLQKMLKNLKEGGHRVLIFSQMTKMLDLLEDFLEHEGYKYERIDG 1068
Score = 40 (19.1 bits), Expect = 0.00024, Sum P(2) = 0.00024
Identities = 11/43 (25%), Positives = 24/43 (55%)
Query: 12 EDKRKEQATFEVEQVDQAKRIISPF---MLRRLKKDVLTELPK 51
E+ E T ++++ + K++ P + +R KK+ L+ LP+
Sbjct: 9 EELLSEAETLKIKKKKKPKKLKEPKVPKLSKRQKKESLSLLPQ 51
>UNIPROTKB|F5GWX5 [details] [associations]
symbol:CHD4 "Chromodomain-helicase-DNA-binding protein 4"
species:9606 "Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0008270 "zinc
ion binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IDA]
InterPro:IPR001841 InterPro:IPR000330 InterPro:IPR000953
InterPro:IPR001650 InterPro:IPR001965 InterPro:IPR002464
InterPro:IPR012957 InterPro:IPR012958 InterPro:IPR019787
Pfam:PF00176 Pfam:PF00271 Pfam:PF00628 Pfam:PF08073 Pfam:PF08074
PROSITE:PS00690 PROSITE:PS50013 PROSITE:PS50016 PROSITE:PS51194
SMART:SM00184 SMART:SM00249 SMART:SM00298 SMART:SM00490
Pfam:PF00385 GO:GO:0005524 GO:GO:0005634 GO:GO:0006355
GO:GO:0046872 GO:GO:0003677 GO:GO:0008270 Gene3D:3.30.40.10
InterPro:IPR011011 InterPro:IPR013083 SUPFAM:SSF57903
InterPro:IPR019786 PROSITE:PS01359 InterPro:IPR016197
SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR023780 InterPro:IPR009462
InterPro:IPR009463 Pfam:PF06461 Pfam:PF06465 EMBL:AC006064
IPI:IPI00000846 HGNC:HGNC:1919 ChiTaRS:CHD4
ProteinModelPortal:F5GWX5 SMR:F5GWX5 PRIDE:F5GWX5
Ensembl:ENST00000544040 UCSC:uc001qpn.3 ArrayExpress:F5GWX5
Bgee:F5GWX5 Uniprot:F5GWX5
Length = 1905
Score = 144 (55.7 bits), Expect = 1.7e-15, Sum P(2) = 1.7e-15
Identities = 30/89 (33%), Positives = 52/89 (58%)
Query: 22 EVEQVDQAKRI---ISPFMLRRLKKDVLTELPKKTALVIKVPMIPSQAEKYRGLMEDFKK 78
++ + DQ K++ + P MLRRLK DV +P KT L+++V + P Q + Y+ ++ +
Sbjct: 929 DIAKEDQIKKLHDMLGPHMLRRLKADVFKNMPSKTELIVRVELSPMQKKYYKYILTRNFE 988
Query: 79 TANPEGSNRSNEISHMSMFMMLRKMANHP 107
N G N++S +++ M L+K NHP
Sbjct: 989 ALNARGGG--NQVSLLNVVMDLKKCCNHP 1015
Score = 126 (49.4 bits), Expect = 1.7e-15, Sum P(2) = 1.7e-15
Identities = 25/54 (46%), Positives = 39/54 (72%)
Query: 173 LVVESGKLKKLDEILPDLKKNGHRVLIFSQFIFVLDILGHYMDIRGWRHLRLDG 226
L+ SGKL L ++L +LK+ GHRVLIFSQ +LD+L +++ G+++ R+DG
Sbjct: 1038 LIRASGKLLLLQKMLKNLKEGGHRVLIFSQMTKMLDLLEDFLEHEGYKYERIDG 1091
>UNIPROTKB|E2RHA0 [details] [associations]
symbol:CHD4 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005634 "nucleus" evidence=IEA] [GO:0008270
"zinc ion binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR001841 InterPro:IPR000330 InterPro:IPR000953
InterPro:IPR001650 InterPro:IPR001965 InterPro:IPR002464
InterPro:IPR012957 InterPro:IPR012958 InterPro:IPR019787
Pfam:PF00176 Pfam:PF00271 Pfam:PF00628 Pfam:PF08073 Pfam:PF08074
PROSITE:PS00690 PROSITE:PS50013 PROSITE:PS50016 PROSITE:PS51194
SMART:SM00184 SMART:SM00249 SMART:SM00298 SMART:SM00490
Pfam:PF00385 GO:GO:0005524 GO:GO:0005634 GO:GO:0006355
GO:GO:0046872 GO:GO:0003677 GO:GO:0008270 Gene3D:3.30.40.10
InterPro:IPR011011 InterPro:IPR013083 SUPFAM:SSF57903
InterPro:IPR019786 PROSITE:PS01359 InterPro:IPR016197
SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR023780 GeneTree:ENSGT00560000076896
InterPro:IPR009462 InterPro:IPR009463 Pfam:PF06461 Pfam:PF06465
CTD:1108 KO:K11643 EMBL:AAEX03015287 RefSeq:XP_867754.2
Ensembl:ENSCAFT00000023774 GeneID:477714 KEGG:cfa:477714
Uniprot:E2RHA0
Length = 1912
Score = 144 (55.7 bits), Expect = 1.7e-15, Sum P(2) = 1.7e-15
Identities = 30/89 (33%), Positives = 52/89 (58%)
Query: 22 EVEQVDQAKRI---ISPFMLRRLKKDVLTELPKKTALVIKVPMIPSQAEKYRGLMEDFKK 78
++ + DQ K++ + P MLRRLK DV +P KT L+++V + P Q + Y+ ++ +
Sbjct: 936 DIAKEDQIKKLHDMLGPHMLRRLKADVFKNMPSKTELIVRVELSPMQKKYYKYILTRNFE 995
Query: 79 TANPEGSNRSNEISHMSMFMMLRKMANHP 107
N G N++S +++ M L+K NHP
Sbjct: 996 ALNARGGG--NQVSLLNVVMDLKKCCNHP 1022
Score = 126 (49.4 bits), Expect = 1.7e-15, Sum P(2) = 1.7e-15
Identities = 25/54 (46%), Positives = 39/54 (72%)
Query: 173 LVVESGKLKKLDEILPDLKKNGHRVLIFSQFIFVLDILGHYMDIRGWRHLRLDG 226
L+ SGKL L ++L +LK+ GHRVLIFSQ +LD+L +++ G+++ R+DG
Sbjct: 1045 LIRASGKLLLLQKMLKNLKEGGHRVLIFSQMTKMLDLLEDFLEHEGYKYERIDG 1098
>UNIPROTKB|Q14839 [details] [associations]
symbol:CHD4 "Chromodomain-helicase-DNA-binding protein 4"
species:9606 "Homo sapiens" [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0016568 "chromatin modification"
evidence=IEA] [GO:0016581 "NuRD complex" evidence=IDA] [GO:0005515
"protein binding" evidence=IPI] [GO:0005737 "cytoplasm"
evidence=IDA] [GO:0005813 "centrosome" evidence=IDA] [GO:0004003
"ATP-dependent DNA helicase activity" evidence=TAS] [GO:0006357
"regulation of transcription from RNA polymerase II promoter"
evidence=TAS] [GO:0001103 "RNA polymerase II repressing
transcription factor binding" evidence=IPI] [GO:0005634 "nucleus"
evidence=IDA] InterPro:IPR001841 InterPro:IPR000330
InterPro:IPR000953 InterPro:IPR001650 InterPro:IPR001965
InterPro:IPR002464 InterPro:IPR012957 InterPro:IPR012958
InterPro:IPR019787 Pfam:PF00176 Pfam:PF00271 Pfam:PF00628
Pfam:PF08073 Pfam:PF08074 PROSITE:PS00690 PROSITE:PS50013
PROSITE:PS50016 PROSITE:PS51194 SMART:SM00184 SMART:SM00249
SMART:SM00298 SMART:SM00490 Pfam:PF00385 GO:GO:0005524
GO:GO:0005737 GO:GO:0005813 GO:GO:0046872 GO:GO:0003677
GO:GO:0008270 GO:GO:0006357 GO:GO:0006351 GO:GO:0016568
Gene3D:3.30.40.10 InterPro:IPR011011 InterPro:IPR013083
SUPFAM:SSF57903 GO:GO:0004003 InterPro:IPR019786 PROSITE:PS01359
Pathway_Interaction_DB:hdac_classi_pathway InterPro:IPR016197
SUPFAM:SSF54160 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0016581 InterPro:IPR023780 PROSITE:PS00598
HOGENOM:HOG000231124 InterPro:IPR009462 InterPro:IPR009463
Pfam:PF06461 Pfam:PF06465 HOVERGEN:HBG005326 EMBL:X86691
EMBL:AC006064 EMBL:BC038596 IPI:IPI00000846 IPI:IPI00455210
RefSeq:NP_001264.2 UniGene:Hs.162233 PDB:1MM2 PDB:1MM3 PDB:2EE1
PDB:2L5U PDB:2L75 PDBsum:1MM2 PDBsum:1MM3 PDBsum:2EE1 PDBsum:2L5U
PDBsum:2L75 ProteinModelPortal:Q14839 SMR:Q14839 DIP:DIP-31183N
IntAct:Q14839 MINT:MINT-349766 STRING:Q14839 PhosphoSite:Q14839
DMDM:311033360 PaxDb:Q14839 PRIDE:Q14839 DNASU:1108
Ensembl:ENST00000309577 Ensembl:ENST00000357008
Ensembl:ENST00000544484 GeneID:1108 KEGG:hsa:1108 UCSC:uc001qpo.3
UCSC:uc001qpp.3 CTD:1108 GeneCards:GC12M006679 H-InvDB:HIX0201859
HGNC:HGNC:1919 HPA:HPA012008 MIM:603277 neXtProt:NX_Q14839
PharmGKB:PA26455 KO:K11643 OMA:ERMLLCR OrthoDB:EOG4WH8JX
ChiTaRS:CHD4 EvolutionaryTrace:Q14839 GenomeRNAi:1108 NextBio:4598
PMAP-CutDB:Q14839 ArrayExpress:Q14839 Bgee:Q14839 CleanEx:HS_CHD4
Genevestigator:Q14839 GermOnline:ENSG00000111642 Uniprot:Q14839
Length = 1912
Score = 144 (55.7 bits), Expect = 1.7e-15, Sum P(2) = 1.7e-15
Identities = 30/89 (33%), Positives = 52/89 (58%)
Query: 22 EVEQVDQAKRI---ISPFMLRRLKKDVLTELPKKTALVIKVPMIPSQAEKYRGLMEDFKK 78
++ + DQ K++ + P MLRRLK DV +P KT L+++V + P Q + Y+ ++ +
Sbjct: 936 DIAKEDQIKKLHDMLGPHMLRRLKADVFKNMPSKTELIVRVELSPMQKKYYKYILTRNFE 995
Query: 79 TANPEGSNRSNEISHMSMFMMLRKMANHP 107
N G N++S +++ M L+K NHP
Sbjct: 996 ALNARGGG--NQVSLLNVVMDLKKCCNHP 1022
Score = 126 (49.4 bits), Expect = 1.7e-15, Sum P(2) = 1.7e-15
Identities = 25/54 (46%), Positives = 39/54 (72%)
Query: 173 LVVESGKLKKLDEILPDLKKNGHRVLIFSQFIFVLDILGHYMDIRGWRHLRLDG 226
L+ SGKL L ++L +LK+ GHRVLIFSQ +LD+L +++ G+++ R+DG
Sbjct: 1045 LIRASGKLLLLQKMLKNLKEGGHRVLIFSQMTKMLDLLEDFLEHEGYKYERIDG 1098
>UNIPROTKB|F1SLR5 [details] [associations]
symbol:CHD4 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0016581 "NuRD complex" evidence=IEA] [GO:0008134
"transcription factor binding" evidence=IEA] [GO:0005813
"centrosome" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] InterPro:IPR001841 InterPro:IPR000330
InterPro:IPR000953 InterPro:IPR001650 InterPro:IPR001965
InterPro:IPR002464 InterPro:IPR012957 InterPro:IPR012958
InterPro:IPR019787 Pfam:PF00176 Pfam:PF00271 Pfam:PF00628
Pfam:PF08073 Pfam:PF08074 PROSITE:PS00690 PROSITE:PS50013
PROSITE:PS50016 PROSITE:PS51194 SMART:SM00184 SMART:SM00249
SMART:SM00298 SMART:SM00490 Pfam:PF00385 GO:GO:0005524
GO:GO:0005737 GO:GO:0005813 GO:GO:0006355 GO:GO:0046872
GO:GO:0003677 GO:GO:0008270 Gene3D:3.30.40.10 InterPro:IPR011011
InterPro:IPR013083 SUPFAM:SSF57903 InterPro:IPR019786
PROSITE:PS01359 InterPro:IPR016197 SUPFAM:SSF54160
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
GO:GO:0016581 InterPro:IPR023780 GeneTree:ENSGT00560000076896
InterPro:IPR009462 InterPro:IPR009463 Pfam:PF06461 Pfam:PF06465
CTD:1108 KO:K11643 OMA:ERMLLCR EMBL:CU914489 EMBL:GACC01000070
RefSeq:XP_003126577.3 UniGene:Ssc.25044 Ensembl:ENSSSCT00000000759
GeneID:100515610 KEGG:ssc:100515610 Uniprot:F1SLR5
Length = 1912
Score = 144 (55.7 bits), Expect = 1.7e-15, Sum P(2) = 1.7e-15
Identities = 30/89 (33%), Positives = 52/89 (58%)
Query: 22 EVEQVDQAKRI---ISPFMLRRLKKDVLTELPKKTALVIKVPMIPSQAEKYRGLMEDFKK 78
++ + DQ K++ + P MLRRLK DV +P KT L+++V + P Q + Y+ ++ +
Sbjct: 936 DIAKEDQIKKLHDMLGPHMLRRLKADVFKNMPSKTELIVRVELSPMQKKYYKYILTRNFE 995
Query: 79 TANPEGSNRSNEISHMSMFMMLRKMANHP 107
N G N++S +++ M L+K NHP
Sbjct: 996 ALNARGGG--NQVSLLNVVMDLKKCCNHP 1022
Score = 126 (49.4 bits), Expect = 1.7e-15, Sum P(2) = 1.7e-15
Identities = 25/54 (46%), Positives = 39/54 (72%)
Query: 173 LVVESGKLKKLDEILPDLKKNGHRVLIFSQFIFVLDILGHYMDIRGWRHLRLDG 226
L+ SGKL L ++L +LK+ GHRVLIFSQ +LD+L +++ G+++ R+DG
Sbjct: 1045 LIRASGKLLLLQKMLKNLKEGGHRVLIFSQMTKMLDLLEDFLEHEGYKYERIDG 1098
>MGI|MGI:1344380 [details] [associations]
symbol:Chd4 "chromodomain helicase DNA binding protein 4"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0001103 "RNA polymerase II repressing
transcription factor binding" evidence=ISO] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005515 "protein
binding" evidence=IPI] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005737 "cytoplasm"
evidence=ISO] [GO:0005813 "centrosome" evidence=ISO] [GO:0005856
"cytoskeleton" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0008134
"transcription factor binding" evidence=IPI] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0016568 "chromatin modification"
evidence=IEA] [GO:0016581 "NuRD complex" evidence=ISO;IDA]
[GO:0016787 "hydrolase activity" evidence=IEA] [GO:0016818
"hydrolase activity, acting on acid anhydrides, in
phosphorus-containing anhydrides" evidence=IEA] [GO:0043234
"protein complex" evidence=IDA] [GO:0046872 "metal ion binding"
evidence=IEA] InterPro:IPR001841 InterPro:IPR000330
InterPro:IPR000953 InterPro:IPR001650 InterPro:IPR001965
InterPro:IPR002464 InterPro:IPR012957 InterPro:IPR012958
InterPro:IPR019787 Pfam:PF00176 Pfam:PF00271 Pfam:PF00628
Pfam:PF08073 Pfam:PF08074 PROSITE:PS00690 PROSITE:PS50013
PROSITE:PS50016 PROSITE:PS51194 SMART:SM00184 SMART:SM00249
SMART:SM00298 SMART:SM00490 MGI:MGI:1344380 Pfam:PF00385
GO:GO:0005524 GO:GO:0005737 GO:GO:0005813 GO:GO:0006355
GO:GO:0046872 GO:GO:0003677 GO:GO:0008270 GO:GO:0006351
GO:GO:0016568 Gene3D:3.30.40.10 InterPro:IPR011011
InterPro:IPR013083 SUPFAM:SSF57903 InterPro:IPR019786
PROSITE:PS01359 InterPro:IPR016197 SUPFAM:SSF54160 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
GO:GO:0016581 InterPro:IPR023780 PROSITE:PS00598
GeneTree:ENSGT00560000076896 HOGENOM:HOG000231124
InterPro:IPR009462 InterPro:IPR009463 Pfam:PF06461 Pfam:PF06465
HOVERGEN:HBG005326 CTD:1108 KO:K11643 OrthoDB:EOG4WH8JX
ChiTaRS:CHD4 EMBL:BC058578 IPI:IPI00396802 RefSeq:NP_666091.1
UniGene:Mm.333388 ProteinModelPortal:Q6PDQ2 SMR:Q6PDQ2
DIP:DIP-59651N IntAct:Q6PDQ2 STRING:Q6PDQ2 PhosphoSite:Q6PDQ2
PaxDb:Q6PDQ2 PRIDE:Q6PDQ2 Ensembl:ENSMUST00000056889 GeneID:107932
KEGG:mmu:107932 UCSC:uc009dtk.1 NextBio:359735 PMAP-CutDB:Q6PDQ2
Bgee:Q6PDQ2 CleanEx:MM_CHD4 Genevestigator:Q6PDQ2
GermOnline:ENSMUSG00000063870 Uniprot:Q6PDQ2
Length = 1915
Score = 144 (55.7 bits), Expect = 1.7e-15, Sum P(2) = 1.7e-15
Identities = 30/89 (33%), Positives = 52/89 (58%)
Query: 22 EVEQVDQAKRI---ISPFMLRRLKKDVLTELPKKTALVIKVPMIPSQAEKYRGLMEDFKK 78
++ + DQ K++ + P MLRRLK DV +P KT L+++V + P Q + Y+ ++ +
Sbjct: 929 DIAKEDQIKKLHDMLGPHMLRRLKADVFKNMPSKTELIVRVELSPMQKKYYKYILTRNFE 988
Query: 79 TANPEGSNRSNEISHMSMFMMLRKMANHP 107
N G N++S +++ M L+K NHP
Sbjct: 989 ALNARGGG--NQVSLLNVVMDLKKCCNHP 1015
Score = 126 (49.4 bits), Expect = 1.7e-15, Sum P(2) = 1.7e-15
Identities = 25/54 (46%), Positives = 39/54 (72%)
Query: 173 LVVESGKLKKLDEILPDLKKNGHRVLIFSQFIFVLDILGHYMDIRGWRHLRLDG 226
L+ SGKL L ++L +LK+ GHRVLIFSQ +LD+L +++ G+++ R+DG
Sbjct: 1038 LIRASGKLLLLQKMLKNLKEGGHRVLIFSQMTKMLDLLEDFLEHEGYKYERIDG 1091
>UNIPROTKB|E9PU01 [details] [associations]
symbol:Chd4 "Protein Chd4" species:10116 "Rattus
norvegicus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
InterPro:IPR001841 InterPro:IPR000330 InterPro:IPR000953
InterPro:IPR001650 InterPro:IPR001965 InterPro:IPR002464
InterPro:IPR012957 InterPro:IPR012958 InterPro:IPR019787
Pfam:PF00176 Pfam:PF00271 Pfam:PF00628 Pfam:PF08073 Pfam:PF08074
PROSITE:PS00690 PROSITE:PS50013 PROSITE:PS50016 PROSITE:PS51194
SMART:SM00184 SMART:SM00249 SMART:SM00298 SMART:SM00490
Pfam:PF00385 RGD:620064 GO:GO:0005524 GO:GO:0005634 GO:GO:0006355
GO:GO:0046872 GO:GO:0003677 GO:GO:0008270 Gene3D:3.30.40.10
InterPro:IPR011011 InterPro:IPR013083 SUPFAM:SSF57903
InterPro:IPR019786 PROSITE:PS01359 InterPro:IPR016197
SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR023780 GeneTree:ENSGT00560000076896
InterPro:IPR009462 InterPro:IPR009463 Pfam:PF06461 Pfam:PF06465
IPI:IPI01016558 PRIDE:E9PU01 Ensembl:ENSRNOT00000055970
ArrayExpress:E9PU01 Uniprot:E9PU01
Length = 1915
Score = 144 (55.7 bits), Expect = 1.7e-15, Sum P(2) = 1.7e-15
Identities = 30/89 (33%), Positives = 52/89 (58%)
Query: 22 EVEQVDQAKRI---ISPFMLRRLKKDVLTELPKKTALVIKVPMIPSQAEKYRGLMEDFKK 78
++ + DQ K++ + P MLRRLK DV +P KT L+++V + P Q + Y+ ++ +
Sbjct: 929 DIAKEDQIKKLHDMLGPHMLRRLKADVFKNMPSKTELIVRVELSPMQKKYYKYILTRNFE 988
Query: 79 TANPEGSNRSNEISHMSMFMMLRKMANHP 107
N G N++S +++ M L+K NHP
Sbjct: 989 ALNARGGG--NQVSLLNVVMDLKKCCNHP 1015
Score = 126 (49.4 bits), Expect = 1.7e-15, Sum P(2) = 1.7e-15
Identities = 25/54 (46%), Positives = 39/54 (72%)
Query: 173 LVVESGKLKKLDEILPDLKKNGHRVLIFSQFIFVLDILGHYMDIRGWRHLRLDG 226
L+ SGKL L ++L +LK+ GHRVLIFSQ +LD+L +++ G+++ R+DG
Sbjct: 1038 LIRASGKLLLLQKMLKNLKEGGHRVLIFSQMTKMLDLLEDFLEHEGYKYERIDG 1091
>UNIPROTKB|J9NW81 [details] [associations]
symbol:CHD4 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005634 "nucleus" evidence=IEA] [GO:0008270
"zinc ion binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR001841 InterPro:IPR000330 InterPro:IPR000953
InterPro:IPR001650 InterPro:IPR001965 InterPro:IPR002464
InterPro:IPR012957 InterPro:IPR012958 InterPro:IPR019787
Pfam:PF00176 Pfam:PF00271 Pfam:PF00628 Pfam:PF08073 Pfam:PF08074
PROSITE:PS00690 PROSITE:PS50013 PROSITE:PS50016 PROSITE:PS51194
SMART:SM00184 SMART:SM00249 SMART:SM00298 SMART:SM00490
Pfam:PF00385 GO:GO:0005524 GO:GO:0005634 GO:GO:0006355
GO:GO:0046872 GO:GO:0003677 GO:GO:0008270 Gene3D:3.30.40.10
InterPro:IPR011011 InterPro:IPR013083 SUPFAM:SSF57903
InterPro:IPR019786 PROSITE:PS01359 InterPro:IPR016197
SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR023780 GeneTree:ENSGT00560000076896
InterPro:IPR009462 InterPro:IPR009463 Pfam:PF06461 Pfam:PF06465
OMA:ERMLLCR EMBL:AAEX03015287 Ensembl:ENSCAFT00000048002
Uniprot:J9NW81
Length = 1932
Score = 144 (55.7 bits), Expect = 1.7e-15, Sum P(2) = 1.7e-15
Identities = 30/89 (33%), Positives = 52/89 (58%)
Query: 22 EVEQVDQAKRI---ISPFMLRRLKKDVLTELPKKTALVIKVPMIPSQAEKYRGLMEDFKK 78
++ + DQ K++ + P MLRRLK DV +P KT L+++V + P Q + Y+ ++ +
Sbjct: 956 DIAKEDQIKKLHDMLGPHMLRRLKADVFKNMPSKTELIVRVELSPMQKKYYKYILTRNFE 1015
Query: 79 TANPEGSNRSNEISHMSMFMMLRKMANHP 107
N G N++S +++ M L+K NHP
Sbjct: 1016 ALNARGGG--NQVSLLNVVMDLKKCCNHP 1042
Score = 126 (49.4 bits), Expect = 1.7e-15, Sum P(2) = 1.7e-15
Identities = 25/54 (46%), Positives = 39/54 (72%)
Query: 173 LVVESGKLKKLDEILPDLKKNGHRVLIFSQFIFVLDILGHYMDIRGWRHLRLDG 226
L+ SGKL L ++L +LK+ GHRVLIFSQ +LD+L +++ G+++ R+DG
Sbjct: 1065 LIRASGKLLLLQKMLKNLKEGGHRVLIFSQMTKMLDLLEDFLEHEGYKYERIDG 1118
>UNIPROTKB|F1N3F6 [details] [associations]
symbol:CHD4 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0016581 "NuRD complex" evidence=IEA] [GO:0008134
"transcription factor binding" evidence=IEA] [GO:0005813
"centrosome" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] InterPro:IPR001841 InterPro:IPR000330
InterPro:IPR000953 InterPro:IPR001650 InterPro:IPR001965
InterPro:IPR002464 InterPro:IPR012957 InterPro:IPR012958
InterPro:IPR019787 Pfam:PF00176 Pfam:PF00271 Pfam:PF00628
Pfam:PF08073 Pfam:PF08074 PROSITE:PS00690 PROSITE:PS50013
PROSITE:PS50016 PROSITE:PS51194 SMART:SM00184 SMART:SM00249
SMART:SM00298 SMART:SM00490 Pfam:PF00385 GO:GO:0005524
GO:GO:0005737 GO:GO:0005813 GO:GO:0006355 GO:GO:0046872
GO:GO:0003677 GO:GO:0008270 Gene3D:3.30.40.10 InterPro:IPR011011
InterPro:IPR013083 SUPFAM:SSF57903 InterPro:IPR019786
PROSITE:PS01359 InterPro:IPR016197 SUPFAM:SSF54160
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
GO:GO:0016581 InterPro:IPR023780 GeneTree:ENSGT00560000076896
InterPro:IPR009462 InterPro:IPR009463 Pfam:PF06461 Pfam:PF06465
OMA:ERMLLCR EMBL:DAAA02014463 IPI:IPI00877578
Ensembl:ENSBTAT00000019612 ArrayExpress:F1N3F6 Uniprot:F1N3F6
Length = 1934
Score = 144 (55.7 bits), Expect = 1.7e-15, Sum P(2) = 1.7e-15
Identities = 30/89 (33%), Positives = 52/89 (58%)
Query: 22 EVEQVDQAKRI---ISPFMLRRLKKDVLTELPKKTALVIKVPMIPSQAEKYRGLMEDFKK 78
++ + DQ K++ + P MLRRLK DV +P KT L+++V + P Q + Y+ ++ +
Sbjct: 958 DIAKEDQIKKLHDMLGPHMLRRLKADVFKNMPSKTELIVRVELSPMQKKYYKYILTRNFE 1017
Query: 79 TANPEGSNRSNEISHMSMFMMLRKMANHP 107
N G N++S +++ M L+K NHP
Sbjct: 1018 ALNARGGG--NQVSLLNVVMDLKKCCNHP 1044
Score = 126 (49.4 bits), Expect = 1.7e-15, Sum P(2) = 1.7e-15
Identities = 25/54 (46%), Positives = 39/54 (72%)
Query: 173 LVVESGKLKKLDEILPDLKKNGHRVLIFSQFIFVLDILGHYMDIRGWRHLRLDG 226
L+ SGKL L ++L +LK+ GHRVLIFSQ +LD+L +++ G+++ R+DG
Sbjct: 1067 LIRASGKLLLLQKMLKNLKEGGHRVLIFSQMTKMLDLLEDFLEHEGYKYERIDG 1120
>UNIPROTKB|F1LM59 [details] [associations]
symbol:Chd4 "Protein Chd4" species:10116 "Rattus
norvegicus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
InterPro:IPR001841 InterPro:IPR000330 InterPro:IPR000953
InterPro:IPR001650 InterPro:IPR001965 InterPro:IPR002464
InterPro:IPR012957 InterPro:IPR012958 InterPro:IPR019787
Pfam:PF00176 Pfam:PF00271 Pfam:PF00628 Pfam:PF08073 Pfam:PF08074
PROSITE:PS00690 PROSITE:PS50013 PROSITE:PS50016 PROSITE:PS51194
SMART:SM00184 SMART:SM00249 SMART:SM00298 SMART:SM00490
Pfam:PF00385 RGD:620064 GO:GO:0005524 GO:GO:0005737 GO:GO:0005813
GO:GO:0006355 GO:GO:0046872 GO:GO:0003677 GO:GO:0008270
Gene3D:3.30.40.10 InterPro:IPR011011 InterPro:IPR013083
SUPFAM:SSF57903 InterPro:IPR019786 PROSITE:PS01359
InterPro:IPR016197 SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 GO:GO:0016581 InterPro:IPR023780
InterPro:IPR009462 InterPro:IPR009463 Pfam:PF06461 Pfam:PF06465
IPI:IPI00365698 PRIDE:F1LM59 Ensembl:ENSRNOT00000024864
ArrayExpress:F1LM59 Uniprot:F1LM59
Length = 1945
Score = 144 (55.7 bits), Expect = 1.7e-15, Sum P(2) = 1.7e-15
Identities = 30/89 (33%), Positives = 52/89 (58%)
Query: 22 EVEQVDQAKRI---ISPFMLRRLKKDVLTELPKKTALVIKVPMIPSQAEKYRGLMEDFKK 78
++ + DQ K++ + P MLRRLK DV +P KT L+++V + P Q + Y+ ++ +
Sbjct: 957 DIAKEDQIKKLHDMLGPHMLRRLKADVFKNMPSKTELIVRVELSPMQKKYYKYILTRNFE 1016
Query: 79 TANPEGSNRSNEISHMSMFMMLRKMANHP 107
N G N++S +++ M L+K NHP
Sbjct: 1017 ALNARGGG--NQVSLLNVVMDLKKCCNHP 1043
Score = 126 (49.4 bits), Expect = 1.7e-15, Sum P(2) = 1.7e-15
Identities = 25/54 (46%), Positives = 39/54 (72%)
Query: 173 LVVESGKLKKLDEILPDLKKNGHRVLIFSQFIFVLDILGHYMDIRGWRHLRLDG 226
L+ SGKL L ++L +LK+ GHRVLIFSQ +LD+L +++ G+++ R+DG
Sbjct: 1066 LIRASGKLLLLQKMLKNLKEGGHRVLIFSQMTKMLDLLEDFLEHEGYKYERIDG 1119
>UNIPROTKB|Q9ULG1 [details] [associations]
symbol:INO80 "DNA helicase INO80" species:9606 "Homo
sapiens" [GO:0003779 "actin binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0005874 "microtubule" evidence=IEA]
[GO:0051301 "cell division" evidence=IEA] [GO:0003678 "DNA helicase
activity" evidence=IDA] [GO:0003677 "DNA binding" evidence=IDA]
[GO:0016887 "ATPase activity" evidence=IDA] [GO:0005634 "nucleus"
evidence=IDA] [GO:0006338 "chromatin remodeling" evidence=IDA]
[GO:0031011 "Ino80 complex" evidence=IDA] [GO:0034644 "cellular
response to UV" evidence=IMP] [GO:0000724 "double-strand break
repair via homologous recombination" evidence=IMP] [GO:0070914
"UV-damage excision repair" evidence=IMP] [GO:0071479 "cellular
response to ionizing radiation" evidence=IMP] [GO:0006302
"double-strand break repair" evidence=IMP] [GO:0045944 "positive
regulation of transcription from RNA polymerase II promoter"
evidence=IMP] [GO:0030307 "positive regulation of cell growth"
evidence=IMP] [GO:2000045 "regulation of G1/S transition of mitotic
cell cycle" evidence=IMP] [GO:0010571 "positive regulation of DNA
replication involved in S phase" evidence=IMP] [GO:0043014
"alpha-tubulin binding" evidence=IMP] [GO:0051225 "spindle
assembly" evidence=IMP] [GO:0000070 "mitotic sister chromatid
segregation" evidence=IMP] [GO:0005515 "protein binding"
evidence=IPI] [GO:0006200 "ATP catabolic process" evidence=IDA]
[GO:0032508 "DNA duplex unwinding" evidence=IDA] InterPro:IPR000330
InterPro:IPR001650 InterPro:IPR020838 Pfam:PF00176 Pfam:PF00271
Pfam:PF13892 PROSITE:PS51194 PROSITE:PS51413 SMART:SM00490
GO:GO:0005524 GO:GO:0030307 GO:GO:0051301 GO:GO:0051225
GO:GO:0003677 GO:GO:0045944 GO:GO:0016887 GO:GO:0006338
GO:GO:0000070 GO:GO:0031011 GO:GO:0000724 GO:GO:0034644
GO:GO:0005874 GO:GO:0071479 HSSP:Q97XQ5 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0043014
GO:GO:0003678 GO:GO:0070914 GO:GO:2000045 EMBL:CH471125
GO:GO:0010571 KO:K11665 CTD:54617 ChiTaRS:INO80 EMBL:AB033085
EMBL:BC146785 EMBL:AL137280 IPI:IPI00008091 PIR:T46350
RefSeq:NP_060023.1 UniGene:Hs.292949 ProteinModelPortal:Q9ULG1
SMR:Q9ULG1 DIP:DIP-34296N IntAct:Q9ULG1 STRING:Q9ULG1
PhosphoSite:Q9ULG1 DMDM:114149322 PaxDb:Q9ULG1 PRIDE:Q9ULG1
Ensembl:ENST00000361937 Ensembl:ENST00000401393 GeneID:54617
KEGG:hsa:54617 UCSC:uc001zni.3 GeneCards:GC15M041271
HGNC:HGNC:26956 MIM:610169 neXtProt:NX_Q9ULG1 PharmGKB:PA162392040
HOGENOM:HOG000231795 HOVERGEN:HBG057875 InParanoid:Q9ULG1
OMA:KVIRKFW OrthoDB:EOG4ZKJKF GenomeRNAi:54617 NextBio:57137
ArrayExpress:Q9ULG1 Bgee:Q9ULG1 CleanEx:HS_INO80
Genevestigator:Q9ULG1 GermOnline:ENSG00000128908 Uniprot:Q9ULG1
Length = 1556
Score = 148 (57.2 bits), Expect = 2.1e-15, Sum P(2) = 2.1e-15
Identities = 30/68 (44%), Positives = 46/68 (67%)
Query: 168 KVP--DDLVVESGKLKKLDEILPDLKKNGHRVLIFSQFIFVLDILGHYMDIRGWRHLRLD 225
++P + L+ +SGKL LD +L LK GHRVLI+SQ ++D+L YM R ++RLD
Sbjct: 1089 RIPGKESLITDSGKLYALDVLLTRLKSQGHRVLIYSQMTRMIDLLEEYMVYRKHTYMRLD 1148
Query: 226 GATQVSSR 233
G++++S R
Sbjct: 1149 GSSKISER 1156
Score = 118 (46.6 bits), Expect = 2.1e-15, Sum P(2) = 2.1e-15
Identities = 30/102 (29%), Positives = 50/102 (49%)
Query: 12 EDKRKEQATFEVEQVDQAKRIISPFMLRRLKKDVLTELPKKTALVIKVPMIPSQAEKYRG 71
E + ++ + Q+ + I+ PFMLRR+KKDV EL K +++ + Q Y+
Sbjct: 718 ESHAENKSAIDENQLSRLHMILKPFMLRRIKKDVENELSDKIEILMYCQLTSRQKLLYQA 777
Query: 72 L-----MEDFKKTANPEGSNRSNEISH-MSMFMMLRKMANHP 107
L +ED +++ N S M++ M RK+ NHP
Sbjct: 778 LKNKISIEDLLQSSMGSTQQAQNTTSSLMNLVMQFRKVCNHP 819
>ZFIN|ZDB-GENE-040426-892 [details] [associations]
symbol:chd1l "chromodomain helicase DNA binding
protein 1-like" species:7955 "Danio rerio" [GO:0003677 "DNA
binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0006338 "chromatin remodeling"
evidence=ISS] [GO:0006974 "response to DNA damage stimulus"
evidence=IEA;ISS] [GO:0005634 "nucleus" evidence=IEA;ISS]
[GO:0000166 "nucleotide binding" evidence=IEA;ISS] [GO:0016887
"ATPase activity" evidence=ISS] [GO:0006281 "DNA repair"
evidence=IEA] [GO:0016787 "hydrolase activity" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS00690 PROSITE:PS51194 SMART:SM00490 InterPro:IPR001357
ZFIN:ZDB-GENE-040426-892 GO:GO:0005524 GO:GO:0005634 GO:GO:0000166
GO:GO:0003677 GO:GO:0006281 GO:GO:0006974 GO:GO:0016887
GO:GO:0006338 GO:GO:0004386 SUPFAM:SSF52113 PROSITE:PS50172
HSSP:Q97XQ5 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 InterPro:IPR002589 PROSITE:PS51154 CTD:9557
HOGENOM:HOG000030789 HOVERGEN:HBG077542 OrthoDB:EOG4SXNBV
EMBL:BC050498 IPI:IPI00482841 RefSeq:NP_956607.1 UniGene:Dr.84280
ProteinModelPortal:Q7ZU90 PRIDE:Q7ZU90 GeneID:393283
KEGG:dre:393283 InParanoid:Q7ZU90 NextBio:20814340
ArrayExpress:Q7ZU90 Uniprot:Q7ZU90
Length = 1026
Score = 140 (54.3 bits), Expect = 2.3e-15, Sum P(2) = 2.3e-15
Identities = 29/67 (43%), Positives = 44/67 (65%)
Query: 167 YKVPDDLVVESGKLKKLDEILPDLKKNGHRVLIFSQFIFVLDILGHYMDIRGWRHLRLDG 226
+++ + LV SGKL LD +L L++ GH VL+FSQ +LDIL Y++ RG+ + RLDG
Sbjct: 325 FEMGEHLVEASGKLSLLDSMLAYLQEGGHHVLLFSQMTRMLDILQDYLEYRGYSYERLDG 384
Query: 227 ATQVSSR 233
+ + R
Sbjct: 385 SVRGEER 391
Score = 124 (48.7 bits), Expect = 2.3e-15, Sum P(2) = 2.3e-15
Identities = 33/99 (33%), Positives = 52/99 (52%)
Query: 12 EDKRKEQATFEVEQ--VDQAKRIISPFMLRRLKKDVLTELPKKTALVIKVPMIPSQAEKY 69
ED A + E VD+ +++ PF+LRR+K +V ELPKKT LV+ + Q Y
Sbjct: 220 EDFVNAYADIQTEPALVDELHQVLQPFLLRRVKAEVAAELPKKTELVVFHGLSALQKRYY 279
Query: 70 RG-LMEDFKKTANPEGSNRSNEISHMSMFMMLRKMANHP 107
+ LM D +++S + +++ M LRK +HP
Sbjct: 280 KAILMRDLDAFR----TDQSTKTRLLNVLMQLRKCVDHP 314
>SGD|S000003118 [details] [associations]
symbol:INO80 "ATPase and nucleosome spacing factor"
species:4932 "Saccharomyces cerevisiae" [GO:0016787 "hydrolase
activity" evidence=IEA] [GO:0006974 "response to DNA damage
stimulus" evidence=IEA] [GO:0006281 "DNA repair"
evidence=IEA;IMP;IDA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0016568 "chromatin modification"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0042766 "nucleosome mobilization" evidence=IMP] [GO:0045944
"positive regulation of transcription from RNA polymerase II
promoter" evidence=IMP] [GO:0043486 "histone exchange"
evidence=IDA] [GO:0043140 "ATP-dependent 3'-5' DNA helicase
activity" evidence=IDA] [GO:0016817 "hydrolase activity, acting on
acid anhydrides" evidence=IEA] [GO:0006338 "chromatin remodeling"
evidence=IDA] [GO:0016887 "ATPase activity" evidence=IDA]
[GO:0006366 "transcription from RNA polymerase II promoter"
evidence=IMP;IDA] [GO:0006348 "chromatin silencing at telomere"
evidence=IMP] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0043618 "regulation of transcription from RNA polymerase II
promoter in response to stress" evidence=IMP] [GO:0016584
"nucleosome positioning" evidence=IDA] [GO:0031011 "Ino80 complex"
evidence=IDA] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR020838 Pfam:PF00176 Pfam:PF00271 Pfam:PF13892
PROSITE:PS51194 PROSITE:PS51413 SMART:SM00490 SGD:S000003118
GO:GO:0005524 EMBL:BK006941 GO:GO:0003677 GO:GO:0006281
GO:GO:0045944 GO:GO:0016887 GO:GO:0006366 GO:GO:0031011
GO:GO:0006348 GO:GO:0004386 GO:GO:0043486 GO:GO:0042766 EMBL:Z48618
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
EMBL:X99960 GO:GO:0016584 GO:GO:0043618 KO:K11665
GeneTree:ENSGT00680000100052 HOGENOM:HOG000048482 OrthoDB:EOG41G6C8
EMBL:Z72672 PIR:S60416 RefSeq:NP_011365.1 ProteinModelPortal:P53115
SMR:P53115 DIP:DIP-1386N IntAct:P53115 MINT:MINT-388693
STRING:P53115 PaxDb:P53115 PeptideAtlas:P53115 EnsemblFungi:YGL150C
GeneID:852728 KEGG:sce:YGL150C CYGD:YGL150c OMA:DEFSDWF
NextBio:972117 Genevestigator:P53115 GermOnline:YGL150C
Uniprot:P53115
Length = 1489
Score = 155 (59.6 bits), Expect = 2.4e-15, Sum P(3) = 2.4e-15
Identities = 28/63 (44%), Positives = 43/63 (68%)
Query: 171 DDLVVESGKLKKLDEILPDLKKNGHRVLIFSQFIFVLDILGHYMDIRGWRHLRLDGATQV 230
D + ES KL+KLDE+L LK GHRVLI+ Q ++D++ Y+ R + H+RLDG++++
Sbjct: 1292 DRFITESAKLRKLDELLVKLKSEGHRVLIYFQMTKMMDLMEEYLTYRQYNHIRLDGSSKL 1351
Query: 231 SSR 233
R
Sbjct: 1352 EDR 1354
Score = 94 (38.1 bits), Expect = 2.4e-15, Sum P(3) = 2.4e-15
Identities = 30/96 (31%), Positives = 45/96 (46%)
Query: 24 EQVDQAKRIISPFMLRRLKKDVLTELPKKTALVIKVPMIPSQAEKYRGLMEDFKKT---- 79
+Q+ + I+ PFMLRR+KK+V +EL K + + + QA+ Y+ L
Sbjct: 919 QQLRRLHMILKPFMLRRVKKNVQSELGDKIEIDVLCDLTQRQAKLYQVLKSQISTNYDAI 978
Query: 80 ----ANPEGSNR-SNEISHMSMF---MMLRKMANHP 107
N SN SN S ++ M RK+ NHP
Sbjct: 979 ENAATNDSTSNSASNSGSDQNLINAVMQFRKVCNHP 1014
Score = 48 (22.0 bits), Expect = 2.4e-15, Sum P(3) = 2.4e-15
Identities = 8/27 (29%), Positives = 18/27 (66%)
Query: 2 DSDSEDDARYEDKRKEQATFEVEQVDQ 28
D+DS++D E+ +++ E+E +D+
Sbjct: 246 DNDSDNDDEEENGEEDEEEEEIEDLDE 272
Score = 43 (20.2 bits), Expect = 3.6e-10, Sum P(3) = 3.6e-10
Identities = 21/71 (29%), Positives = 33/71 (46%)
Query: 22 EVEQVDQAKRIISPFMLRRLKKDVLTELPKKTALVIKVPMIPSQAEKYRGLMEDFKKTAN 81
E E+ D K+I M + KK+ + K+ A K+ + +Q E Y + KT
Sbjct: 547 EREERDLKKKIEKEAM-EQAKKEEEEKESKRQAK--KLNFLLTQTELYSHFIGRKIKTNE 603
Query: 82 PEGSNRSNEIS 92
EG+N S+ S
Sbjct: 604 LEGNNVSSNDS 614
Score = 42 (19.8 bits), Expect = 4.6e-10, Sum P(3) = 4.6e-10
Identities = 12/52 (23%), Positives = 26/52 (50%)
Query: 39 RRLKKDVLTEL-PKKTALVIKVPMIPSQAEKYRGLMEDFKKTANPEGSNRSN 89
RR ++T+ P + L IK+ + ++ + L+ D K+ E + ++N
Sbjct: 354 RRFTNCIVTDYNPIDSKLNIKITLKQYHVKRLKKLINDAKREREREEALKNN 405
Score = 41 (19.5 bits), Expect = 1.6e-08, Sum P(2) = 1.6e-08
Identities = 12/60 (20%), Positives = 30/60 (50%)
Query: 2 DSDSEDDARYEDKRKEQATFEVEQVDQAKRIISPFMLRRLKKDVL--TELPKKTALVIKV 59
D+D ED +KR+++++ + +S +++ K++ ++ PK +IK+
Sbjct: 283 DNDDEDFNPDVEKRRKRSSSSSSSTKLSMNSLSLITSKKINKNITINSDRPKIVRELIKM 342
>RGD|1310969 [details] [associations]
symbol:Ino80 "INO80 homolog (S. cerevisiae)" species:10116
"Rattus norvegicus" [GO:0000070 "mitotic sister chromatid
segregation" evidence=ISO] [GO:0000724 "double-strand break repair
via homologous recombination" evidence=ISO] [GO:0003677 "DNA
binding" evidence=IEA;ISO] [GO:0003678 "DNA helicase activity"
evidence=ISO] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISO] [GO:0006200 "ATP catabolic process" evidence=ISO]
[GO:0006302 "double-strand break repair" evidence=ISO] [GO:0006338
"chromatin remodeling" evidence=ISO] [GO:0010571 "positive
regulation of DNA replication involved in S phase" evidence=ISO]
[GO:0016887 "ATPase activity" evidence=ISO] [GO:0030307 "positive
regulation of cell growth" evidence=ISO] [GO:0031011 "Ino80
complex" evidence=ISO] [GO:0032508 "DNA duplex unwinding"
evidence=ISO] [GO:0034644 "cellular response to UV" evidence=ISO]
[GO:0043014 "alpha-tubulin binding" evidence=ISO] [GO:0045944
"positive regulation of transcription from RNA polymerase II
promoter" evidence=ISO] [GO:0051225 "spindle assembly"
evidence=ISO] [GO:0070914 "UV-damage excision repair" evidence=ISO]
[GO:0071479 "cellular response to ionizing radiation" evidence=ISO]
[GO:2000045 "regulation of G1/S transition of mitotic cell cycle"
evidence=ISO] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR020838 Pfam:PF00176 Pfam:PF00271 Pfam:PF13892
PROSITE:PS51194 PROSITE:PS51413 SMART:SM00490 RGD:1310969
GO:GO:0005524 GO:GO:0003677 GO:GO:0004386 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GeneTree:ENSGT00680000100052
IPI:IPI00569811 Ensembl:ENSRNOT00000031672 UCSC:RGD:1310969
Uniprot:D4A6Q6
Length = 1553
Score = 147 (56.8 bits), Expect = 2.8e-15, Sum P(2) = 2.8e-15
Identities = 30/68 (44%), Positives = 46/68 (67%)
Query: 168 KVP--DDLVVESGKLKKLDEILPDLKKNGHRVLIFSQFIFVLDILGHYMDIRGWRHLRLD 225
++P + L+ +SGKL LD +L LK GHRVLI+SQ ++D+L YM R ++RLD
Sbjct: 1086 RIPGKESLITDSGKLYALDILLTRLKSQGHRVLIYSQMTRMIDLLEEYMVYRKHTYMRLD 1145
Query: 226 GATQVSSR 233
G++++S R
Sbjct: 1146 GSSKISER 1153
Score = 118 (46.6 bits), Expect = 2.8e-15, Sum P(2) = 2.8e-15
Identities = 30/102 (29%), Positives = 50/102 (49%)
Query: 12 EDKRKEQATFEVEQVDQAKRIISPFMLRRLKKDVLTELPKKTALVIKVPMIPSQAEKYRG 71
E + ++ + Q+ + I+ PFMLRR+KKDV EL K +++ + Q Y+
Sbjct: 714 ESHAENKSAIDENQLSRLHMILKPFMLRRIKKDVENELSDKIEILMYCQLTSRQKLLYQA 773
Query: 72 L-----MEDFKKTANPEGSNRSNEISH-MSMFMMLRKMANHP 107
L +ED +++ N S M++ M RK+ NHP
Sbjct: 774 LKNKISIEDLLQSSMGSTQQAQNTTSSLMNLVMQFRKVCNHP 815
>ZFIN|ZDB-GENE-041111-187 [details] [associations]
symbol:chd4a "chromodomain helicase DNA binding
protein 4a" species:7955 "Danio rerio" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0016818 "hydrolase activity, acting on acid
anhydrides, in phosphorus-containing anhydrides" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0046872 "metal
ion binding" evidence=IEA] InterPro:IPR001841 InterPro:IPR000330
InterPro:IPR000953 InterPro:IPR001650 InterPro:IPR001965
InterPro:IPR002464 InterPro:IPR012957 InterPro:IPR012958
InterPro:IPR019787 Pfam:PF00176 Pfam:PF00271 Pfam:PF00628
Pfam:PF08073 Pfam:PF08074 PROSITE:PS00690 PROSITE:PS50013
PROSITE:PS50016 PROSITE:PS51194 SMART:SM00184 SMART:SM00249
SMART:SM00298 SMART:SM00490 Pfam:PF00385 ZFIN:ZDB-GENE-041111-187
GO:GO:0005524 GO:GO:0005634 GO:GO:0006355 GO:GO:0046872
GO:GO:0003677 GO:GO:0008270 Gene3D:3.30.40.10 InterPro:IPR011011
InterPro:IPR013083 SUPFAM:SSF57903 InterPro:IPR019786
PROSITE:PS01359 InterPro:IPR016197 SUPFAM:SSF54160
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR023780 GeneTree:ENSGT00560000076896 InterPro:IPR009462
InterPro:IPR009463 Pfam:PF06461 Pfam:PF06465 EMBL:BX004850
IPI:IPI00962864 Ensembl:ENSDART00000005453 ArrayExpress:F1QWV5
Bgee:F1QWV5 Uniprot:F1QWV5
Length = 1930
Score = 144 (55.7 bits), Expect = 3.2e-15, Sum P(3) = 3.2e-15
Identities = 30/89 (33%), Positives = 52/89 (58%)
Query: 22 EVEQVDQAKRI---ISPFMLRRLKKDVLTELPKKTALVIKVPMIPSQAEKYRGLMEDFKK 78
++ + DQ K++ + P MLRRLK DV +P KT L+++V + P Q + Y+ ++ +
Sbjct: 920 DIAKEDQIKKLHDMLGPHMLRRLKADVFKHMPSKTELIVRVELSPMQKKYYKFILTRNFE 979
Query: 79 TANPEGSNRSNEISHMSMFMMLRKMANHP 107
N G N++S +++ M L+K NHP
Sbjct: 980 ALNTRGGG--NQVSLLNVVMDLKKCCNHP 1006
Score = 122 (48.0 bits), Expect = 3.2e-15, Sum P(3) = 3.2e-15
Identities = 25/54 (46%), Positives = 37/54 (68%)
Query: 173 LVVESGKLKKLDEILPDLKKNGHRVLIFSQFIFVLDILGHYMDIRGWRHLRLDG 226
L SGKL L ++L LK+ GHRVLIFSQ +LD+L +++ G+++ R+DG
Sbjct: 1029 LTKSSGKLLLLQKMLRKLKEGGHRVLIFSQMTKMLDLLEDFLENEGYKYERIDG 1082
Score = 40 (19.1 bits), Expect = 3.2e-15, Sum P(3) = 3.2e-15
Identities = 7/18 (38%), Positives = 13/18 (72%)
Query: 10 RYEDKRKEQATFEVEQVD 27
++ D +QAT+E+E +D
Sbjct: 626 KWRDLTYDQATWELEDMD 643
>MGI|MGI:1915392 [details] [associations]
symbol:Ino80 "INO80 homolog (S. cerevisiae)" species:10090
"Mus musculus" [GO:0000070 "mitotic sister chromatid segregation"
evidence=ISO] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0000724 "double-strand break repair via homologous
recombination" evidence=ISO] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=ISO] [GO:0003678
"DNA helicase activity" evidence=ISO] [GO:0003779 "actin binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISO] [GO:0005874 "microtubule" evidence=IEA] [GO:0006200
"ATP catabolic process" evidence=ISO] [GO:0006281 "DNA repair"
evidence=IEA] [GO:0006302 "double-strand break repair"
evidence=ISO] [GO:0006310 "DNA recombination" evidence=IEA]
[GO:0006338 "chromatin remodeling" evidence=ISO] [GO:0006974
"response to DNA damage stimulus" evidence=IEA] [GO:0007049 "cell
cycle" evidence=IEA] [GO:0007067 "mitosis" evidence=IEA]
[GO:0010571 "positive regulation of DNA replication involved in S
phase" evidence=ISO] [GO:0016787 "hydrolase activity" evidence=IEA]
[GO:0016817 "hydrolase activity, acting on acid anhydrides"
evidence=IEA] [GO:0016887 "ATPase activity" evidence=ISO]
[GO:0030307 "positive regulation of cell growth" evidence=ISO]
[GO:0031011 "Ino80 complex" evidence=ISO] [GO:0032508 "DNA duplex
unwinding" evidence=ISO] [GO:0034644 "cellular response to UV"
evidence=ISO] [GO:0043014 "alpha-tubulin binding" evidence=ISO]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=ISO] [GO:0051225 "spindle
assembly" evidence=ISO] [GO:0051301 "cell division" evidence=IEA]
[GO:0070914 "UV-damage excision repair" evidence=ISO] [GO:0071479
"cellular response to ionizing radiation" evidence=ISO] [GO:2000045
"regulation of G1/S transition of mitotic cell cycle" evidence=ISO]
InterPro:IPR000330 InterPro:IPR001650 InterPro:IPR020838
Pfam:PF00176 Pfam:PF00271 Pfam:PF13892 PROSITE:PS51194
PROSITE:PS51413 SMART:SM00490 MGI:MGI:1915392 GO:GO:0005524
GO:GO:0005634 GO:GO:0030307 GO:GO:0051301 GO:GO:0051225
GO:GO:0003677 GO:GO:0045944 GO:GO:0016887 GO:GO:0006338
GO:GO:0000070 GO:GO:0031011 GO:GO:0000724 GO:GO:0034644
GO:GO:0005874 GO:GO:0071479 HSSP:Q97XQ5 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0003678
GO:GO:0070914 GO:GO:2000045 GO:GO:0010571 EMBL:AL844862 KO:K11665
CTD:54617 GeneTree:ENSGT00680000100052 HOGENOM:HOG000231795
HOVERGEN:HBG057875 OMA:KVIRKFW OrthoDB:EOG4ZKJKF EMBL:AK040612
EMBL:AK129317 EMBL:BC059235 IPI:IPI00378561 IPI:IPI00785415
RefSeq:NP_080850.2 UniGene:Mm.330496 ProteinModelPortal:Q6ZPV2
SMR:Q6ZPV2 IntAct:Q6ZPV2 STRING:Q6ZPV2 PhosphoSite:Q6ZPV2
PaxDb:Q6ZPV2 PRIDE:Q6ZPV2 Ensembl:ENSMUST00000049920
Ensembl:ENSMUST00000110808 GeneID:68142 KEGG:mmu:68142
InParanoid:Q6ZPV2 NextBio:326516 Bgee:Q6ZPV2 Genevestigator:Q6ZPV2
GermOnline:ENSMUSG00000034154 Uniprot:Q6ZPV2
Length = 1559
Score = 148 (57.2 bits), Expect = 3.4e-15, Sum P(2) = 3.4e-15
Identities = 30/68 (44%), Positives = 46/68 (67%)
Query: 168 KVP--DDLVVESGKLKKLDEILPDLKKNGHRVLIFSQFIFVLDILGHYMDIRGWRHLRLD 225
++P + L+ +SGKL LD +L LK GHRVLI+SQ ++D+L YM R ++RLD
Sbjct: 1092 RIPGKESLITDSGKLYALDVLLTRLKSQGHRVLIYSQMTRMIDLLEEYMVYRKHTYMRLD 1151
Query: 226 GATQVSSR 233
G++++S R
Sbjct: 1152 GSSKISER 1159
Score = 116 (45.9 bits), Expect = 3.4e-15, Sum P(2) = 3.4e-15
Identities = 30/102 (29%), Positives = 49/102 (48%)
Query: 12 EDKRKEQATFEVEQVDQAKRIISPFMLRRLKKDVLTELPKKTALVIKVPMIPSQAEKYRG 71
E + ++ + Q+ + I+ PFMLRR+KKDV EL K ++ + Q Y+
Sbjct: 720 ESHAENKSAIDENQLSRLHMILKPFMLRRIKKDVENELSDKIEILTYCQLTSRQKLLYQA 779
Query: 72 L-----MEDFKKTANPEGSNRSNEISH-MSMFMMLRKMANHP 107
L +ED +++ N S M++ M RK+ NHP
Sbjct: 780 LKNKISIEDLLQSSMGSTQQAQNTTSSLMNLVMQFRKVCNHP 821
>UNIPROTKB|K7EMY3 [details] [associations]
symbol:CHD5 "Chromodomain-helicase-DNA-binding protein 5"
species:9606 "Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] InterPro:IPR000330
InterPro:IPR001650 InterPro:IPR002464 Pfam:PF00176 Pfam:PF00271
PROSITE:PS00690 PROSITE:PS51194 SMART:SM00490 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 EMBL:AL031847 InterPro:IPR009462
InterPro:IPR009463 Pfam:PF06461 Pfam:PF06465 EMBL:AL035406
HGNC:HGNC:16816 Ensembl:ENST00000462991 Uniprot:K7EMY3
Length = 1060
Score = 138 (53.6 bits), Expect = 3.5e-15, Sum P(2) = 3.5e-15
Identities = 29/89 (32%), Positives = 52/89 (58%)
Query: 22 EVEQVDQAKRI---ISPFMLRRLKKDVLTELPKKTALVIKVPMIPSQAEKYRGLMEDFKK 78
++ + DQ K++ + P MLRRLK DV +P KT L+++V + Q + Y+ ++ +
Sbjct: 293 DISKEDQIKKLHDLLGPHMLRRLKADVFKNMPAKTELIVRVELSQMQKKYYKFILTRNFE 352
Query: 79 TANPEGSNRSNEISHMSMFMMLRKMANHP 107
N +G N++S +++ M L+K NHP
Sbjct: 353 ALNSKGGG--NQVSLLNIMMDLKKCCNHP 379
Score = 125 (49.1 bits), Expect = 3.5e-15, Sum P(2) = 3.5e-15
Identities = 25/54 (46%), Positives = 37/54 (68%)
Query: 173 LVVESGKLKKLDEILPDLKKNGHRVLIFSQFIFVLDILGHYMDIRGWRHLRLDG 226
LV SGKL L ++L L+ GHRVLIFSQ +LD+L +++ G+++ R+DG
Sbjct: 402 LVKSSGKLMLLQKMLKKLRDEGHRVLIFSQMTKMLDLLEDFLEYEGYKYERIDG 455
>DICTYBASE|DDB_G0292948 [details] [associations]
symbol:isw "CHR group protein" species:44689
"Dictyostelium discoideum" [GO:0043044 "ATP-dependent chromatin
remodeling" evidence=IEA] [GO:0031491 "nucleosome binding"
evidence=IEA] [GO:0016818 "hydrolase activity, acting on acid
anhydrides, in phosphorus-containing anhydrides" evidence=IEA]
[GO:0006338 "chromatin remodeling" evidence=IEA;ISS] [GO:0005634
"nucleus" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003682
"chromatin binding" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0016887 "ATPase activity" evidence=ISS] [GO:0016587 "Isw1
complex" evidence=ISS] [GO:0006200 "ATP catabolic process"
evidence=ISS] [GO:0044351 "macropinocytosis" evidence=RCA]
InterPro:IPR000330 InterPro:IPR001005 InterPro:IPR001650
InterPro:IPR009057 InterPro:IPR015194 InterPro:IPR015195
Pfam:PF00176 Pfam:PF00271 Pfam:PF09110 Pfam:PF09111 PROSITE:PS51194
SMART:SM00490 SMART:SM00717 dictyBase:DDB_G0292948 GO:GO:0005524
GenomeReviews:CM000155_GR GO:GO:0003677 EMBL:AAFI02000197
GO:GO:0016887 Gene3D:1.10.10.60 SUPFAM:SSF46689 GO:GO:0006338
InterPro:IPR017884 PROSITE:PS51293 GO:GO:0004386 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0031491
GO:GO:0043044 GO:GO:0016587 KO:K11654 SUPFAM:SSF101224
RefSeq:XP_629432.1 ProteinModelPortal:Q54CI4 STRING:Q54CI4
PRIDE:Q54CI4 EnsemblProtists:DDB0231763 GeneID:8628951
KEGG:ddi:DDB_G0292948 InParanoid:Q54CI4 OMA:IREANAF
ProtClustDB:CLSZ2728711 Uniprot:Q54CI4
Length = 1221
Score = 146 (56.5 bits), Expect = 3.7e-15, Sum P(2) = 3.7e-15
Identities = 30/63 (47%), Positives = 43/63 (68%)
Query: 167 YKVPDDLVVESGKLKKLDEILPDLKKNGHRVLIFSQFIFVLDILGHYMDIRGWRHLRLDG 226
Y + L+ SGK+ LD++L LK+ G RVLIFSQ +LDIL YM RG+++ R+DG
Sbjct: 570 YTTGEHLIDNSGKMALLDKLLKKLKERGSRVLIFSQMSRMLDILEDYMLYRGYKYARIDG 629
Query: 227 ATQ 229
+T+
Sbjct: 630 STE 632
Score = 116 (45.9 bits), Expect = 3.7e-15, Sum P(2) = 3.7e-15
Identities = 28/105 (26%), Positives = 50/105 (47%)
Query: 3 SDSEDDARYEDKRKEQATFEVEQVDQAKRIISPFMLRRLKKDVLTELPKKTALVIKVPMI 62
S S+D ++ D + E +D+ +++ PF+LRR+K +V LP K + + V +
Sbjct: 456 SSSDDFDKWFDLANNTEN-QQEVIDKLHKVLRPFLLRRIKTEVEKSLPPKKEIKLFVGLS 514
Query: 63 PSQAEKYRGLMEDFKKTANPEGSNRSNEISHMSMFMMLRKMANHP 107
Q E Y+ L+ + + +++ M LRK NHP
Sbjct: 515 TMQKEWYKRLLSKDLDAVVVGAKGNTGRVRLLNICMQLRKACNHP 559
>UNIPROTKB|E2QW28 [details] [associations]
symbol:HELLS "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0003677 GO:GO:0004386 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 OMA:ETFYTAI
GeneTree:ENSGT00550000075106 EMBL:AAEX03015428
Ensembl:ENSCAFT00000012889 Uniprot:E2QW28
Length = 839
Score = 203 (76.5 bits), Expect = 3.8e-15, P = 3.8e-15
Identities = 67/215 (31%), Positives = 99/215 (46%)
Query: 31 RIISPFMLRRLKKDVLTELPKKTALVIKVPMIPSQAEKY-----RGLMEDF----KKTAN 81
+I++PF+LRRLK DV E+P K +V+ P+ Q Y R + F K+T
Sbjct: 443 QILTPFLLRRLKSDVALEVPPKREVVVYAPLSKKQEIFYTAIVNRTIANMFGCSEKETVE 502
Query: 82 PEGSNRSNEISHMSM-FMMLRKMANHPLGLRYYFQENTLREIADCLVEDPTYKGTNPQYI 140
+ R + S+ + + N L Q RE A P N +
Sbjct: 503 LSPTGRPRRRARKSINYSKIDDFPNELEKLISQMQPEVDRERAVVETNIPVESEVNLK-- 560
Query: 141 LEDISWLSDYDIHQLSLKHKTLD--CAKYKVPDDLVVESGKLKKLDEILPDLKKNGHRVL 198
L++I L + L +D ++K+ ++LV SGK LD +LP+LK GH+VL
Sbjct: 561 LQNIMMLLRKCCNHPYLIEYPIDPVTQEFKIDEELVTNSGKFLILDRMLPELKARGHKVL 620
Query: 199 IFSQFIFVLDILGHYMDIRGWRHLRLDGATQVSSR 233
+FSQ +LDIL Y R + RLDG+ S R
Sbjct: 621 LFSQMTRMLDILMDYCHFRNFNFSRLDGSMSYSER 655
>UNIPROTKB|F1NS62 [details] [associations]
symbol:CHD1L "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0005886 "plasma membrane"
evidence=IEA] [GO:0006338 "chromatin remodeling" evidence=IEA]
[GO:0006974 "response to DNA damage stimulus" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001650 InterPro:IPR002464
Pfam:PF00176 Pfam:PF00271 PROSITE:PS00690 PROSITE:PS51194
SMART:SM00490 GO:GO:0005886 GO:GO:0005524 GO:GO:0005634
GO:GO:0005737 GO:GO:0003677 GO:GO:0006974 GO:GO:0006338
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
OMA:TCQTIAL GeneTree:ENSGT00670000098110 EMBL:AADN02037964
EMBL:AADN02037962 EMBL:AADN02037963 IPI:IPI00573125
Ensembl:ENSGALT00000024254 Uniprot:F1NS62
Length = 895
Score = 150 (57.9 bits), Expect = 3.9e-15, Sum P(2) = 3.9e-15
Identities = 32/67 (47%), Positives = 44/67 (65%)
Query: 167 YKVPDDLVVESGKLKKLDEILPDLKKNGHRVLIFSQFIFVLDILGHYMDIRGWRHLRLDG 226
+++ D +V SGKL LD++L L GHRVL+FSQ +LDIL YMD RG+ + RLDG
Sbjct: 336 FEIGDHIVEASGKLCLLDKLLSFLYDGGHRVLLFSQMTKLLDILQDYMDYRGYSYERLDG 395
Query: 227 ATQVSSR 233
+ + R
Sbjct: 396 SVRGEER 402
Score = 107 (42.7 bits), Expect = 3.9e-15, Sum P(2) = 3.9e-15
Identities = 33/109 (30%), Positives = 52/109 (47%)
Query: 22 EVEQVDQAKRIISPFMLRRLKKDVLTELPKKTALVIKVPMIPSQAEKYRGLMEDFKKTAN 81
E E + ++ PF+LRR+K +V +LPKK +V+ M Q + Y+ ++ K
Sbjct: 243 ESEPAKELHNLLQPFLLRRVKSEVTADLPKKVEVVLYHGMSALQRKYYKAILT--KDLDA 300
Query: 82 PEGSNRSNEISHMSMFMMLRKMANHPLGLRYYFQ--ENTLREIADCLVE 128
EG ++ ++ + LRK HP Y F E EI D +VE
Sbjct: 301 FEGGT-GRKVMLQNVLIQLRKCVAHP----YLFNGVEPEPFEIGDHIVE 344
>RGD|1309820 [details] [associations]
symbol:Hells "helicase, lymphoid specific" species:10116 "Rattus
norvegicus" [GO:0000775 "chromosome, centromeric region"
evidence=ISO] [GO:0001655 "urogenital system development"
evidence=ISO] [GO:0003677 "DNA binding" evidence=IEA] [GO:0003682
"chromatin binding" evidence=ISO] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
"nucleus" evidence=ISO] [GO:0005721 "centromeric heterochromatin"
evidence=ISO] [GO:0006306 "DNA methylation" evidence=ISO]
[GO:0006342 "chromatin silencing" evidence=ISO] [GO:0006346
"methylation-dependent chromatin silencing" evidence=ISO]
[GO:0007275 "multicellular organismal development" evidence=ISO]
[GO:0010216 "maintenance of DNA methylation" evidence=ISO]
[GO:0031508 "centromeric heterochromatin assembly" evidence=ISO]
[GO:0043066 "negative regulation of apoptotic process"
evidence=ISO] InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176
Pfam:PF00271 PROSITE:PS51194 SMART:SM00490 RGD:1309820
GO:GO:0005524 GO:GO:0005634 GO:GO:0003677 GO:GO:0003682
GO:GO:0001655 GO:GO:0004386 GO:GO:0005721 InterPro:IPR014001
PROSITE:PS51192 GO:GO:0031508 GO:GO:0010216 GO:GO:0006346
GO:GO:0046651 IPI:IPI00768565 PRIDE:F1M8B3
Ensembl:ENSRNOT00000017812 OMA:XVERVEL Uniprot:F1M8B3
Length = 494
Score = 199 (75.1 bits), Expect = 4.1e-15, P = 4.1e-15
Identities = 66/215 (30%), Positives = 106/215 (49%)
Query: 31 RIISPFMLRRLKKDVLTELPKKTALVIKVPMIPSQAEKYRGLMEDFKKTANPEGS--NRS 88
+I++PF+LRRLK DV E+P K +V+ P+ Q Y ++ + AN GS +
Sbjct: 98 QILTPFLLRRLKSDVALEVPPKREVVVYAPLCNKQEIFYTAIVN--RTIANMFGSCEKET 155
Query: 89 NEISHMSM-FMMLRKMANHPLGLRYYFQ-ENTLREIADCLVEDPTY-KGTNP-----QYI 140
E+S RK N+ ++ + E + +I + + T +G P
Sbjct: 156 VELSPTGRPKRRSRKSINYSELDQFPSELEKLISQIQPEVKRERTVVEGNIPIESEVNLK 215
Query: 141 LEDISWLSDYDIHQLSLKHKTLD--CAKYKVPDDLVVESGKLKKLDEILPDLKKNGHRVL 198
L++I L + + +D ++K+ ++LV SGK LD +LP+LKK H+VL
Sbjct: 216 LQNIMMLLRKCCNHPYMIEYPIDPVTQEFKIDEELVTNSGKFLILDRMLPELKKRCHKVL 275
Query: 199 IFSQFIFVLDILGHYMDIRGWRHLRLDGATQVSSR 233
+FSQ +LDIL Y +R + RLDG+ S R
Sbjct: 276 VFSQMTSMLDILMDYCHLRNFTFSRLDGSMSYSER 310
>SGD|S000000449 [details] [associations]
symbol:ISW1 "ATPase subunit of imitation-switch (ISWI) class
chromatin remodelers" species:4932 "Saccharomyces cerevisiae"
[GO:0003682 "chromatin binding" evidence=IEA] [GO:0006369
"termination of RNA polymerase II transcription" evidence=IGI]
[GO:0034401 "regulation of transcription by chromatin organization"
evidence=IMP] [GO:0016887 "ATPase activity" evidence=IDA]
[GO:0031491 "nucleosome binding" evidence=IEA;IDA] [GO:0003677 "DNA
binding" evidence=IEA;IDA] [GO:0045944 "positive regulation of
transcription from RNA polymerase II promoter" evidence=IMP]
[GO:0030874 "nucleolar chromatin" evidence=IDA] [GO:0000182 "rDNA
binding" evidence=IDA] [GO:0006363 "termination of RNA polymerase I
transcription" evidence=IGI] [GO:0070870 "heterochromatin
maintenance involved in chromatin silencing" evidence=IGI;IMP]
[GO:0016587 "Isw1 complex" evidence=IPI] [GO:0006354 "DNA-dependent
transcription, elongation" evidence=IMP;IDA] [GO:0006338 "chromatin
remodeling" evidence=IEA;IGI;IMP;IPI] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA;IDA] [GO:0016818 "hydrolase activity, acting
on acid anhydrides, in phosphorus-containing anhydrides"
evidence=IEA] [GO:0043044 "ATP-dependent chromatin remodeling"
evidence=IEA] [GO:0001178 "regulation of transcriptional start site
selection at RNA polymerase II promoter" evidence=IGI] [GO:0016568
"chromatin modification" evidence=IEA] [GO:0016787 "hydrolase
activity" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0016584 "nucleosome positioning"
evidence=IGI;IMP] InterPro:IPR000330 InterPro:IPR001005
InterPro:IPR001650 InterPro:IPR009057 InterPro:IPR015194
InterPro:IPR015195 Pfam:PF00176 Pfam:PF00271 Pfam:PF09110
Pfam:PF09111 PROSITE:PS00690 PROSITE:PS51194 SMART:SM00490
SMART:SM00717 SGD:S000000449 GO:GO:0005524 GO:GO:0006200
GO:GO:0045944 EMBL:BK006936 Gene3D:1.10.10.60 SUPFAM:SSF46689
GO:GO:0006338 InterPro:IPR017884 PROSITE:PS51293 GO:GO:0004386
GO:GO:0034401 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0031491 GO:GO:0043044 GO:GO:0016584
GO:GO:0006363 GO:GO:0006354 GO:GO:0006369
GeneTree:ENSGT00670000098110 GO:GO:0030874 GO:GO:0000182
GO:GO:0001178 GO:GO:0070870 GO:GO:0016587 PDB:2Y9Y PDB:2Y9Z
PDBsum:2Y9Y PDBsum:2Y9Z HOGENOM:HOG000192862 SUPFAM:SSF101224
EMBL:Z36114 PIR:S46122 RefSeq:NP_009804.1 ProteinModelPortal:P38144
SMR:P38144 DIP:DIP-6601N IntAct:P38144 MINT:MINT-614918
STRING:P38144 PaxDb:P38144 PeptideAtlas:P38144 EnsemblFungi:YBR245C
GeneID:852547 KEGG:sce:YBR245C CYGD:YBR245c OMA:LEMITHG
OrthoDB:EOG48SM27 EvolutionaryTrace:P38144 NextBio:971628
Genevestigator:P38144 GermOnline:YBR245C Uniprot:P38144
Length = 1129
Score = 132 (51.5 bits), Expect = 4.7e-15, Sum P(2) = 4.7e-15
Identities = 29/67 (43%), Positives = 40/67 (59%)
Query: 167 YKVPDDLVVESGKLKKLDEILPDLKKNGHRVLIFSQFIFVLDILGHYMDIRGWRHLRLDG 226
Y + LV + KL+ LD++L LK+ G RVLIFSQ +LDIL Y R + + R+DG
Sbjct: 491 YTTDEHLVYNAAKLQVLDKLLKKLKEEGSRVLIFSQMSRLLDILEDYCYFRNYEYCRIDG 550
Query: 227 ATQVSSR 233
+T R
Sbjct: 551 STAHEDR 557
Score = 132 (51.5 bits), Expect = 4.7e-15, Sum P(2) = 4.7e-15
Identities = 33/107 (30%), Positives = 56/107 (52%)
Query: 3 SDSEDDARYEDKRKEQATFEVEQ--VDQAKRIISPFMLRRLKKDVLTELPKKTALVIKVP 60
SD++D ++D ++T E + V Q ++ PF+LRR+K DV T L K L + V
Sbjct: 376 SDAQD---FDDWFSSESTEEDQDKIVKQLHTVLQPFLLRRIKSDVETSLLPKKELNLYVG 432
Query: 61 MIPSQAEKYRGLMEDFKKTANPEGSNRSNEISHMSMFMMLRKMANHP 107
M Q + Y+ ++E N ++ ++ +++ M LRK NHP
Sbjct: 433 MSSMQKKWYKKILEKDLDAVNGSNGSKESKTRLLNIMMQLRKCCNHP 479
>UNIPROTKB|J9NRN3 [details] [associations]
symbol:CHD5 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005634 "nucleus" evidence=IEA] [GO:0008270
"zinc ion binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR001841 InterPro:IPR000330 InterPro:IPR000953
InterPro:IPR001650 InterPro:IPR001965 InterPro:IPR002464
InterPro:IPR012958 InterPro:IPR019787 Pfam:PF00176 Pfam:PF00271
Pfam:PF00628 Pfam:PF08073 PROSITE:PS00690 PROSITE:PS50013
PROSITE:PS50016 PROSITE:PS51194 SMART:SM00184 SMART:SM00249
SMART:SM00298 SMART:SM00490 Pfam:PF00385 GO:GO:0005524
GO:GO:0005634 GO:GO:0006355 GO:GO:0046872 GO:GO:0003677
GO:GO:0008270 Gene3D:3.30.40.10 InterPro:IPR011011
InterPro:IPR013083 SUPFAM:SSF57903 InterPro:IPR019786
PROSITE:PS01359 InterPro:IPR016197 SUPFAM:SSF54160
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR023780 GeneTree:ENSGT00560000076896 EMBL:AAEX03003895
EMBL:AAEX03003896 EMBL:AAEX03003897 Ensembl:ENSCAFT00000044104
Uniprot:J9NRN3
Length = 1195
Score = 138 (53.6 bits), Expect = 4.7e-15, Sum P(3) = 4.7e-15
Identities = 29/89 (32%), Positives = 52/89 (58%)
Query: 22 EVEQVDQAKRI---ISPFMLRRLKKDVLTELPKKTALVIKVPMIPSQAEKYRGLMEDFKK 78
++ + DQ K++ + P MLRRLK DV +P KT L+++V + Q + Y+ ++ +
Sbjct: 884 DISKEDQIKKLHDLLGPHMLRRLKADVFKNMPAKTELIVRVELSQMQKKYYKFILTRNFE 943
Query: 79 TANPEGSNRSNEISHMSMFMMLRKMANHP 107
N +G N++S +++ M L+K NHP
Sbjct: 944 ALNSKGGG--NQVSLLNIMMDLKKCCNHP 970
Score = 125 (49.1 bits), Expect = 4.7e-15, Sum P(3) = 4.7e-15
Identities = 25/54 (46%), Positives = 37/54 (68%)
Query: 173 LVVESGKLKKLDEILPDLKKNGHRVLIFSQFIFVLDILGHYMDIRGWRHLRLDG 226
LV SGKL L ++L L+ GHRVLIFSQ +LD+L +++ G+++ R+DG
Sbjct: 993 LVKSSGKLMLLQKMLKKLRDEGHRVLIFSQMTKMLDLLEDFLEYEGYKYERIDG 1046
Score = 37 (18.1 bits), Expect = 4.7e-15, Sum P(3) = 4.7e-15
Identities = 5/18 (27%), Positives = 13/18 (72%)
Query: 10 RYEDKRKEQATFEVEQVD 27
+++D +Q T+E++ +D
Sbjct: 587 KWKDLPYDQCTWEIDDID 604
>UNIPROTKB|F2Z2R5 [details] [associations]
symbol:CHD5 "Chromodomain-helicase-DNA-binding protein 5"
species:9606 "Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0008270 "zinc
ion binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR001841 InterPro:IPR000330 InterPro:IPR000953
InterPro:IPR001650 InterPro:IPR001965 InterPro:IPR002464
InterPro:IPR012958 InterPro:IPR019787 Pfam:PF00176 Pfam:PF00271
Pfam:PF00628 Pfam:PF08073 PROSITE:PS00690 PROSITE:PS50013
PROSITE:PS50016 PROSITE:PS51194 SMART:SM00184 SMART:SM00249
SMART:SM00298 SMART:SM00490 Pfam:PF00385 GO:GO:0005524
GO:GO:0005634 GO:GO:0006355 GO:GO:0046872 GO:GO:0003677
GO:GO:0008270 Gene3D:3.30.40.10 InterPro:IPR011011
InterPro:IPR013083 SUPFAM:SSF57903 InterPro:IPR019786
PROSITE:PS01359 InterPro:IPR016197 SUPFAM:SSF54160
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 EMBL:AL031847
GO:GO:0008026 InterPro:IPR023780 EMBL:AL035406 HGNC:HGNC:16816
ChiTaRS:CHD5 IPI:IPI00444866 ProteinModelPortal:F2Z2R5 SMR:F2Z2R5
Ensembl:ENST00000496404 ArrayExpress:F2Z2R5 Bgee:F2Z2R5
Uniprot:F2Z2R5
Length = 1225
Score = 138 (53.6 bits), Expect = 5.2e-15, Sum P(3) = 5.2e-15
Identities = 29/89 (32%), Positives = 52/89 (58%)
Query: 22 EVEQVDQAKRI---ISPFMLRRLKKDVLTELPKKTALVIKVPMIPSQAEKYRGLMEDFKK 78
++ + DQ K++ + P MLRRLK DV +P KT L+++V + Q + Y+ ++ +
Sbjct: 910 DISKEDQIKKLHDLLGPHMLRRLKADVFKNMPAKTELIVRVELSQMQKKYYKFILTRNFE 969
Query: 79 TANPEGSNRSNEISHMSMFMMLRKMANHP 107
N +G N++S +++ M L+K NHP
Sbjct: 970 ALNSKGGG--NQVSLLNIMMDLKKCCNHP 996
Score = 125 (49.1 bits), Expect = 5.2e-15, Sum P(3) = 5.2e-15
Identities = 25/54 (46%), Positives = 37/54 (68%)
Query: 173 LVVESGKLKKLDEILPDLKKNGHRVLIFSQFIFVLDILGHYMDIRGWRHLRLDG 226
LV SGKL L ++L L+ GHRVLIFSQ +LD+L +++ G+++ R+DG
Sbjct: 1019 LVKSSGKLMLLQKMLKKLRDEGHRVLIFSQMTKMLDLLEDFLEYEGYKYERIDG 1072
Score = 37 (18.1 bits), Expect = 5.2e-15, Sum P(3) = 5.2e-15
Identities = 5/18 (27%), Positives = 13/18 (72%)
Query: 10 RYEDKRKEQATFEVEQVD 27
+++D +Q T+E++ +D
Sbjct: 613 KWKDLPYDQCTWEIDDID 630
>UNIPROTKB|F1PKX5 [details] [associations]
symbol:INO80 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:2000045 "regulation of G1/S transition of
mitotic cell cycle" evidence=IEA] [GO:0071479 "cellular response to
ionizing radiation" evidence=IEA] [GO:0070914 "UV-damage excision
repair" evidence=IEA] [GO:0051225 "spindle assembly" evidence=IEA]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=IEA] [GO:0043014 "alpha-tubulin
binding" evidence=IEA] [GO:0034644 "cellular response to UV"
evidence=IEA] [GO:0031011 "Ino80 complex" evidence=IEA] [GO:0030307
"positive regulation of cell growth" evidence=IEA] [GO:0016887
"ATPase activity" evidence=IEA] [GO:0010571 "positive regulation of
DNA replication involved in S phase" evidence=IEA] [GO:0006338
"chromatin remodeling" evidence=IEA] [GO:0003678 "DNA helicase
activity" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0000724 "double-strand break repair via homologous
recombination" evidence=IEA] [GO:0000070 "mitotic sister chromatid
segregation" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001650 InterPro:IPR020838
Pfam:PF00176 Pfam:PF00271 Pfam:PF13892 PROSITE:PS51194
PROSITE:PS51413 SMART:SM00490 GO:GO:0005524 GO:GO:0030307
GO:GO:0051225 GO:GO:0003677 GO:GO:0045944 GO:GO:0016887
GO:GO:0006338 GO:GO:0000070 GO:GO:0031011 GO:GO:0000724
GO:GO:0034644 GO:GO:0071479 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0003678 GO:GO:0070914 GO:GO:2000045
GO:GO:0010571 KO:K11665 CTD:54617 GeneTree:ENSGT00680000100052
OMA:KVIRKFW EMBL:AAEX03016071 RefSeq:XP_849183.1
Ensembl:ENSCAFT00000015097 GeneID:478262 KEGG:cfa:478262
Uniprot:F1PKX5
Length = 1560
Score = 148 (57.2 bits), Expect = 6.7e-15, Sum P(3) = 6.7e-15
Identities = 30/68 (44%), Positives = 46/68 (67%)
Query: 168 KVP--DDLVVESGKLKKLDEILPDLKKNGHRVLIFSQFIFVLDILGHYMDIRGWRHLRLD 225
++P + L+ +SGKL LD +L LK GHRVLI+SQ ++D+L YM R ++RLD
Sbjct: 1093 RIPGKESLITDSGKLYALDVLLTRLKSQGHRVLIYSQMTRMIDLLEEYMVYRKHTYMRLD 1152
Query: 226 GATQVSSR 233
G++++S R
Sbjct: 1153 GSSKISER 1160
Score = 112 (44.5 bits), Expect = 6.7e-15, Sum P(3) = 6.7e-15
Identities = 29/102 (28%), Positives = 49/102 (48%)
Query: 12 EDKRKEQATFEVEQVDQAKRIISPFMLRRLKKDVLTELPKKTALVIKVPMIPSQAEKYRG 71
E + ++ + Q+ + I+ PFMLRR+KKDV EL K +++ + Q Y+
Sbjct: 721 ESHAENKSAIDENQLSRLHMILKPFMLRRIKKDVENELSDKIEILMYCQLTSRQKLLYQA 780
Query: 72 L-----MEDFKKTANPEGSNRSNEISH-MSMFMMLRKMANHP 107
L +ED +++ S M++ M RK+ NHP
Sbjct: 781 LKNKISIEDLLQSSMGSTQQAQTTTSSLMNLVMQFRKVCNHP 822
Score = 38 (18.4 bits), Expect = 6.7e-15, Sum P(3) = 6.7e-15
Identities = 7/17 (41%), Positives = 11/17 (64%)
Query: 2 DSDSEDDARYEDKRKEQ 18
D SE D++ ED +E+
Sbjct: 133 DESSEADSQSEDNEEEE 149
>DICTYBASE|DDB_G0280705 [details] [associations]
symbol:DDB_G0280705 "CHR group protein" species:44689
"Dictyostelium discoideum" [GO:0005634 "nucleus" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0003682 "chromatin binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0006357 "regulation of
transcription from RNA polymerase II promoter" evidence=ISS]
[GO:0004003 "ATP-dependent DNA helicase activity" evidence=ISS]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001005
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 PROSITE:PS50013
PROSITE:PS51194 SMART:SM00298 SMART:SM00490 SMART:SM00717
dictyBase:DDB_G0280705 Pfam:PF00385 GO:GO:0005524 GO:GO:0005634
GO:GO:0003677 GO:GO:0006357 GO:GO:0003682 EMBL:AAFI02000037
GO:GO:0004003 InterPro:IPR016197 SUPFAM:SSF54160 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 InterPro:IPR023780
KO:K14437 RefSeq:XP_641133.1 ProteinModelPortal:Q54UZ8
EnsemblProtists:DDB0220644 GeneID:8622691 KEGG:ddi:DDB_G0280705
InParanoid:Q54UZ8 OMA:YPHERID ProtClustDB:CLSZ2846801
Uniprot:Q54UZ8
Length = 2373
Score = 152 (58.6 bits), Expect = 7.1e-15, Sum P(2) = 7.1e-15
Identities = 31/68 (45%), Positives = 45/68 (66%)
Query: 166 KYKVPDDLVVESGKLKKLDEILPDLKKNGHRVLIFSQFIFVLDILGHYMDIRGWRHLRLD 225
K ++ L+ SGKL +D++LP LK H+VLIFSQ + VLDIL Y+ RG+ H R+D
Sbjct: 821 KDQIFQKLIQASGKLVLIDKLLPKLKLGNHKVLIFSQMVSVLDILDDYLTYRGYPHERID 880
Query: 226 GATQVSSR 233
G+ + + R
Sbjct: 881 GSIKGNDR 888
Score = 111 (44.1 bits), Expect = 7.1e-15, Sum P(2) = 7.1e-15
Identities = 27/87 (31%), Positives = 47/87 (54%)
Query: 22 EVEQVDQAKRIISPFMLRRLKKDVLTELPKKTALVIKVPMIPSQAEKYRGLMEDFKKTAN 81
E QV+ + I+ P++LRR+K+ V + K +++V + Q + YR + E K +
Sbjct: 720 ESSQVESLQAILKPYLLRRMKERVEKSIAPKEETIVEVELTTVQKKYYRAIYE--KNFSF 777
Query: 82 PEGSNRSNE-ISHMSMFMMLRKMANHP 107
+SN+ S +++ M LRK NHP
Sbjct: 778 LRKGGKSNQGPSLLNIMMELRKCCNHP 804
Score = 38 (18.4 bits), Expect = 2.5e-07, Sum P(2) = 2.5e-07
Identities = 10/24 (41%), Positives = 14/24 (58%)
Query: 128 EDPTY--KGTNPQ-YILEDISWLS 148
+ P Y KG + Y LE ++WLS
Sbjct: 498 QSPDYFTKGNKLRPYQLEGLNWLS 521
>UNIPROTKB|F1NYY9 [details] [associations]
symbol:INO80 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0005524 "ATP binding" evidence=IEA] [GO:0006338
"chromatin remodeling" evidence=IEA] [GO:0010571 "positive
regulation of DNA replication involved in S phase" evidence=IEA]
[GO:0016887 "ATPase activity" evidence=IEA] [GO:0030307 "positive
regulation of cell growth" evidence=IEA] [GO:0031011 "Ino80
complex" evidence=IEA] [GO:0034644 "cellular response to UV"
evidence=IEA] [GO:0043014 "alpha-tubulin binding" evidence=IEA]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=IEA] [GO:0051225 "spindle
assembly" evidence=IEA] [GO:0070914 "UV-damage excision repair"
evidence=IEA] [GO:0071479 "cellular response to ionizing radiation"
evidence=IEA] [GO:2000045 "regulation of G1/S transition of mitotic
cell cycle" evidence=IEA] [GO:0000070 "mitotic sister chromatid
segregation" evidence=IEA] [GO:0000724 "double-strand break repair
via homologous recombination" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0003678 "DNA helicase activity"
evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR020838 Pfam:PF00176 Pfam:PF00271 Pfam:PF13892
PROSITE:PS51194 PROSITE:PS51413 SMART:SM00490 GO:GO:0005524
GO:GO:0030307 GO:GO:0051225 GO:GO:0003677 GO:GO:0045944
GO:GO:0016887 GO:GO:0006338 GO:GO:0000070 GO:GO:0031011
GO:GO:0000724 GO:GO:0034644 GO:GO:0071479 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0003678 GO:GO:0070914
GO:GO:2000045 GO:GO:0010571 GeneTree:ENSGT00680000100052
OMA:KVIRKFW EMBL:AADN02033529 EMBL:AADN02033530 IPI:IPI00604387
Ensembl:ENSGALT00000013933 Uniprot:F1NYY9
Length = 1564
Score = 152 (58.6 bits), Expect = 7.4e-15, Sum P(2) = 7.4e-15
Identities = 31/68 (45%), Positives = 46/68 (67%)
Query: 168 KVPD--DLVVESGKLKKLDEILPDLKKNGHRVLIFSQFIFVLDILGHYMDIRGWRHLRLD 225
++PD L+ +SGKL LD +L LK GHRVLI+SQ ++D+L YM R ++RLD
Sbjct: 1097 RIPDKESLITDSGKLHALDLLLTRLKSQGHRVLIYSQMTRMIDLLEEYMVYRKHTYMRLD 1156
Query: 226 GATQVSSR 233
G++++S R
Sbjct: 1157 GSSKISER 1164
Score = 107 (42.7 bits), Expect = 7.4e-15, Sum P(2) = 7.4e-15
Identities = 28/102 (27%), Positives = 50/102 (49%)
Query: 12 EDKRKEQATFEVEQVDQAKRIISPFMLRRLKKDVLTELPKKTALVIKVPMIPSQAEKYRG 71
E + ++ + Q+ + I+ PFMLRR+KKDV EL K +++ Q Y+
Sbjct: 723 ESHAENKSAIDENQLSRLHMILKPFMLRRIKKDVENELSDKIEILMYCQQTSRQKLLYQA 782
Query: 72 L-----MEDFKKTA-NPEGSNRSNEISHMSMFMMLRKMANHP 107
L ++D +++ ++ S M++ M RK+ NHP
Sbjct: 783 LKNKISIDDLLQSSMGTTQQAQTTTSSLMNLVMQFRKVCNHP 824
>ZFIN|ZDB-GENE-030131-4532 [details] [associations]
symbol:chd4b "chromodomain helicase DNA binding
protein 4b" species:7955 "Danio rerio" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0016818 "hydrolase activity, acting on acid
anhydrides, in phosphorus-containing anhydrides" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0046872 "metal
ion binding" evidence=IEA] InterPro:IPR001841 InterPro:IPR000330
InterPro:IPR000953 InterPro:IPR001650 InterPro:IPR001965
InterPro:IPR002464 InterPro:IPR012957 InterPro:IPR012958
InterPro:IPR019787 Pfam:PF00176 Pfam:PF00271 Pfam:PF00628
Pfam:PF08073 Pfam:PF08074 PROSITE:PS00690 PROSITE:PS50013
PROSITE:PS50016 PROSITE:PS51194 SMART:SM00184 SMART:SM00249
SMART:SM00298 SMART:SM00490 Pfam:PF00385 ZFIN:ZDB-GENE-030131-4532
GO:GO:0005524 GO:GO:0005634 GO:GO:0006355 GO:GO:0046872
GO:GO:0003677 GO:GO:0008270 Gene3D:3.30.40.10 InterPro:IPR011011
InterPro:IPR013083 SUPFAM:SSF57903 InterPro:IPR019786
PROSITE:PS01359 InterPro:IPR016197 SUPFAM:SSF54160
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR023780 GeneTree:ENSGT00560000076896 InterPro:IPR009462
InterPro:IPR009463 Pfam:PF06461 Pfam:PF06465 EMBL:BX511250
IPI:IPI00931161 RefSeq:XP_685699.4 UniGene:Dr.75373
Ensembl:ENSDART00000092902 Ensembl:ENSDART00000148389 GeneID:560622
KEGG:dre:560622 CTD:560622 NextBio:20883532 Uniprot:F1RBT2
Length = 1953
Score = 144 (55.7 bits), Expect = 7.4e-15, Sum P(2) = 7.4e-15
Identities = 30/89 (33%), Positives = 52/89 (58%)
Query: 22 EVEQVDQAKRI---ISPFMLRRLKKDVLTELPKKTALVIKVPMIPSQAEKYRGLMEDFKK 78
++ + DQ K++ + P MLRRLK DV +P KT L+++V + P Q + Y+ ++ +
Sbjct: 946 DIAKEDQIKKLHDMLGPHMLRRLKADVFKHMPSKTELIVRVELSPMQKKYYKYILTRNFE 1005
Query: 79 TANPEGSNRSNEISHMSMFMMLRKMANHP 107
N G N++S +++ M L+K NHP
Sbjct: 1006 ALNTRGGG--NQVSLLNVVMDLKKCCNHP 1032
Score = 120 (47.3 bits), Expect = 7.4e-15, Sum P(2) = 7.4e-15
Identities = 25/54 (46%), Positives = 37/54 (68%)
Query: 173 LVVESGKLKKLDEILPDLKKNGHRVLIFSQFIFVLDILGHYMDIRGWRHLRLDG 226
L SGKL L ++L LK+ GHRVLIFSQ +LD+L +++ G+++ R+DG
Sbjct: 1055 LTKASGKLMLLFKMLKKLKEGGHRVLIFSQMTKMLDLLEDFLENEGYKYERIDG 1108
Score = 48 (22.0 bits), Expect = 2.0e-07, Sum P(2) = 2.0e-07
Identities = 21/83 (25%), Positives = 38/83 (45%)
Query: 116 ENTLREIADC-LVEDPTYKGTNPQYILEDISWLSDYDIHQLSLKHKTLDCAKYKVPDDLV 174
E LR A + EDP++ ++ L++ HQ H + + P + V
Sbjct: 1839 EEQLRRAAYLNMTEDPSHPSMALNTRFSEVECLAES--HQ----HLSKESMSGNKPANAV 1892
Query: 175 VESGKLKKLDEILPDLKKNGHRV 197
+ LK+L+E+L D+K + R+
Sbjct: 1893 LHK-VLKQLEELLSDMKADVTRL 1914
>UNIPROTKB|I3LDG1 [details] [associations]
symbol:LOC100738357 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0003677
"DNA binding" evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR002464 Pfam:PF00176 Pfam:PF00271 PROSITE:PS00690
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003677
InterPro:IPR014001 PROSITE:PS51192 GO:GO:0008026
GeneTree:ENSGT00560000077077 EMBL:FP236283
Ensembl:ENSSSCT00000031310 OMA:ENWRTEL Uniprot:I3LDG1
Length = 323
Score = 129 (50.5 bits), Expect = 8.2e-15, Sum P(2) = 8.2e-15
Identities = 32/85 (37%), Positives = 48/85 (56%)
Query: 24 EQVDQAKRIISPFMLRRLKKDVLTELPKKTALVIKVPMIPSQAEKYRGLME-DFKKTANP 82
EQV + + I+ P MLRRLK DV L K +I+V + Q + YR ++E +F
Sbjct: 88 EQVKKLQSILKPMMLRRLKDDVEKNLAPKQETIIEVELTNIQKKYYRAILEKNFSFLT-- 145
Query: 83 EGSNRSNEISHMSMFMMLRKMANHP 107
+G+N+ N + ++ M LRK NHP
Sbjct: 146 KGANQHNMPNLINTMMELRKCCNHP 170
Score = 118 (46.6 bits), Expect = 8.2e-15, Sum P(2) = 8.2e-15
Identities = 25/61 (40%), Positives = 39/61 (63%)
Query: 173 LVVESGKLKKLDEILPDLKKNGHRVLIFSQFIFVLDILGHYMDIRGWRHLRLDGATQVSS 232
++ +GKL +D++LP L GH+VLIFSQ + LDIL Y+ R + + R+DG + +
Sbjct: 200 MIQAAGKLVLIDKLLPKLIAGGHKVLIFSQMVRCLDILEDYLIQRRYTYERIDGRVRGNL 259
Query: 233 R 233
R
Sbjct: 260 R 260
Score = 42 (19.8 bits), Expect = 1.5e-05, Sum P(2) = 1.5e-05
Identities = 9/24 (37%), Positives = 17/24 (70%)
Query: 60 PMIPSQAEKYRGLMEDFKKTANPE 83
P + + AE+ ++EDF+KT +P+
Sbjct: 170 PYLINGAEEK--ILEDFRKTHSPD 191
>SGD|S000001934 [details] [associations]
symbol:IRC5 "Putative ATPase containing the DEAD/H
helicase-related sequence motif" species:4932 "Saccharomyces
cerevisiae" [GO:0006312 "mitotic recombination" evidence=IMP]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0005575
"cellular_component" evidence=ND] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0016787 "hydrolase activity" evidence=IEA] [GO:0003674
"molecular_function" evidence=ND] InterPro:IPR000330
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 SGD:S000001934 GO:GO:0005524 GO:GO:0005634
GO:GO:0003677 EMBL:D50617 EMBL:BK006940 GO:GO:0004386
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0006312 GeneTree:ENSGT00550000075106 PIR:S56293
RefSeq:NP_116696.2 ProteinModelPortal:P43610 SMR:P43610
DIP:DIP-5300N MINT:MINT-543614 STRING:P43610 PaxDb:P43610
PRIDE:P43610 EnsemblFungi:YFR038W GeneID:850599 KEGG:sce:YFR038W
CYGD:YFR038w OMA:FEIFNKW OrthoDB:EOG40S3Q6 NextBio:966463
Genevestigator:P43610 GermOnline:YFR038W Uniprot:P43610
Length = 853
Score = 200 (75.5 bits), Expect = 8.2e-15, P = 8.2e-15
Identities = 70/216 (32%), Positives = 106/216 (49%)
Query: 32 IISPFMLRRLKKDVLTE-LPKKTALVIKVPMIPSQAEKYR-GLMEDFKKTANPE-----G 84
I+ PF+LRRLKK VL LP K +I PM +Q + Y+ GL KKT E
Sbjct: 448 ILKPFLLRRLKKVVLANILPPKREYIINCPMTSAQEKFYKAGLNGKLKKTMFKELIKDFF 507
Query: 85 SNRSNEISHMSMFMMLRKMANHPLGLRYYFQENTLREIADCLVE-DPTYKGTNPQYILED 143
+ I H+S +R N+ L NT +I L++ D YK N Q + +
Sbjct: 508 TLNDEYIGHVSN-RSIRDFINYKLSGNE--TSNTDNKINPTLLQMDKLYK-KNLQMEISN 563
Query: 144 ISWLSDYDIHQLSLKHKT-LDCAKYKVPDDLVVE-----SGKLKKLDEILPDLKKNGHRV 197
L + + + T L Y P+DL +E SGKL+ L +++P L GH+V
Sbjct: 564 KK-LQNMMMQLRQIIDSTFLFYFPYLHPEDLTLETLLKTSGKLQILQKLIPPLISEGHKV 622
Query: 198 LIFSQFIFVLDILGHYMDIRGWRHLRLDGATQVSSR 233
LI+SQF+ +LD++ + D+ + R+DG+ +R
Sbjct: 623 LIYSQFVNMLDLIEDWCDLNSFATFRIDGSVNNETR 658
>RGD|2323132 [details] [associations]
symbol:LOC100359912 "SWI/SNF-related matrix-associated
actin-dependent regulator of chromatin a5-like" species:10116
"Rattus norvegicus" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0031491 "nucleosome binding" evidence=IEA] [GO:0043044
"ATP-dependent chromatin remodeling" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001005 InterPro:IPR001650
InterPro:IPR009057 InterPro:IPR015194 InterPro:IPR015195
Pfam:PF00176 Pfam:PF00271 Pfam:PF09110 Pfam:PF09111 PROSITE:PS51194
SMART:SM00490 SMART:SM00717 RGD:2323132 GO:GO:0005524 GO:GO:0003677
Gene3D:1.10.10.60 SUPFAM:SSF46689 InterPro:IPR017884
PROSITE:PS51293 GO:GO:0004386 InterPro:IPR014001 PROSITE:PS51192
GO:GO:0016585 GO:GO:0031491 GO:GO:0043044
GeneTree:ENSGT00680000100002 SUPFAM:SSF101224 IPI:IPI00390811
Ensembl:ENSRNOT00000031851 Uniprot:F1M7H3
Length = 760
Score = 141 (54.7 bits), Expect = 8.5e-15, Sum P(2) = 8.5e-15
Identities = 33/67 (49%), Positives = 39/67 (58%)
Query: 167 YKVPDDLVVESGKLKKLDEILPDLKKNGHRVLIFSQFIFVLDILGHYMDIRGWRHLRLDG 226
Y LV SGK+ LD++LP LK+ G RVLIFSQ VLDIL Y R + + RLDG
Sbjct: 193 YTTDMHLVTNSGKMVVLDKLLPKLKEQGSRVLIFSQMTRVLDILEDYCMWRNYEYCRLDG 252
Query: 227 ATQVSSR 233
T R
Sbjct: 253 QTPHDER 259
Score = 114 (45.2 bits), Expect = 8.5e-15, Sum P(2) = 8.5e-15
Identities = 30/83 (36%), Positives = 46/83 (55%)
Query: 26 VDQAKRIISPFMLRRLKKDVLTELPKKTALVIKVPMIPSQAEKY-RGLMEDFKKTANPEG 84
V++ ++ PF+LRR+K DV LP K + I V + Q E Y R LM+D N G
Sbjct: 102 VERLHMVLRPFLLRRIKADVEKSLPPKKEVKIYVGLSKMQREWYTRILMKDID-ILNSAG 160
Query: 85 SNRSNEISHMSMFMMLRKMANHP 107
+ +++ +++ M LRK NHP
Sbjct: 161 --KMDKMRLLNILMQLRKCCNHP 181
>UNIPROTKB|F1NH78 [details] [associations]
symbol:F1NH78 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0008270 "zinc
ion binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR001841 InterPro:IPR000330 InterPro:IPR000953
InterPro:IPR001650 InterPro:IPR001965 InterPro:IPR002464
InterPro:IPR012957 InterPro:IPR012958 InterPro:IPR019787
Pfam:PF00176 Pfam:PF00271 Pfam:PF00628 Pfam:PF08073 Pfam:PF08074
PROSITE:PS00690 PROSITE:PS50013 PROSITE:PS50016 PROSITE:PS51194
SMART:SM00184 SMART:SM00249 SMART:SM00298 SMART:SM00490
Pfam:PF00385 GO:GO:0005524 GO:GO:0005634 GO:GO:0006355
GO:GO:0046872 GO:GO:0003677 GO:GO:0008270 Gene3D:3.30.40.10
InterPro:IPR011011 InterPro:IPR013083 SUPFAM:SSF57903
InterPro:IPR019786 PROSITE:PS01359 InterPro:IPR016197
SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR023780 GeneTree:ENSGT00560000076896
InterPro:IPR009462 InterPro:IPR009463 Pfam:PF06461 Pfam:PF06465
EMBL:AADN02040929 EMBL:AADN02040930 IPI:IPI00571784
Ensembl:ENSGALT00000023340 ArrayExpress:F1NH78 Uniprot:F1NH78
Length = 1781
Score = 138 (53.6 bits), Expect = 8.8e-15, Sum P(3) = 8.8e-15
Identities = 29/89 (32%), Positives = 52/89 (58%)
Query: 22 EVEQVDQAKRI---ISPFMLRRLKKDVLTELPKKTALVIKVPMIPSQAEKYRGLMEDFKK 78
++ + DQ K++ + P MLRRLK DV +P KT L+++V + Q + Y+ ++ +
Sbjct: 842 DISKEDQIKKLHDLLGPHMLRRLKADVFKNMPAKTELIVRVELSQMQKKYYKFILTRNFE 901
Query: 79 TANPEGSNRSNEISHMSMFMMLRKMANHP 107
N +G N++S +++ M L+K NHP
Sbjct: 902 ALNSKGGG--NQVSLLNIMMDLKKCCNHP 928
Score = 126 (49.4 bits), Expect = 8.8e-15, Sum P(3) = 8.8e-15
Identities = 25/56 (44%), Positives = 38/56 (67%)
Query: 171 DDLVVESGKLKKLDEILPDLKKNGHRVLIFSQFIFVLDILGHYMDIRGWRHLRLDG 226
+ LV SGKL L ++L L+ GHRVLIFSQ +LD+L +++ G+++ R+DG
Sbjct: 949 NSLVKSSGKLMLLQKMLKKLRDGGHRVLIFSQMTKMLDLLEDFLEYEGYKYERIDG 1004
Score = 39 (18.8 bits), Expect = 8.8e-15, Sum P(3) = 8.8e-15
Identities = 5/18 (27%), Positives = 14/18 (77%)
Query: 10 RYEDKRKEQATFEVEQVD 27
+++D +Q T+E++++D
Sbjct: 544 KWKDLPYDQCTWEIDEID 561
>UNIPROTKB|F1SSV0 [details] [associations]
symbol:INO80 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:2000045 "regulation of G1/S transition of mitotic cell
cycle" evidence=IEA] [GO:0071479 "cellular response to ionizing
radiation" evidence=IEA] [GO:0070914 "UV-damage excision repair"
evidence=IEA] [GO:0051225 "spindle assembly" evidence=IEA]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=IEA] [GO:0043014 "alpha-tubulin
binding" evidence=IEA] [GO:0034644 "cellular response to UV"
evidence=IEA] [GO:0031011 "Ino80 complex" evidence=IEA] [GO:0030307
"positive regulation of cell growth" evidence=IEA] [GO:0016887
"ATPase activity" evidence=IEA] [GO:0010571 "positive regulation of
DNA replication involved in S phase" evidence=IEA] [GO:0006338
"chromatin remodeling" evidence=IEA] [GO:0003678 "DNA helicase
activity" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0000724 "double-strand break repair via homologous
recombination" evidence=IEA] [GO:0000070 "mitotic sister chromatid
segregation" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001650 InterPro:IPR020838
Pfam:PF00176 Pfam:PF00271 Pfam:PF13892 PROSITE:PS51194
PROSITE:PS51413 SMART:SM00490 GO:GO:0005524 GO:GO:0030307
GO:GO:0051225 GO:GO:0003677 GO:GO:0045944 GO:GO:0016887
GO:GO:0006338 GO:GO:0000070 GO:GO:0031011 GO:GO:0000724
GO:GO:0034644 GO:GO:0071479 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0003678 GO:GO:0070914 GO:GO:2000045
GO:GO:0010571 KO:K11665 CTD:54617 GeneTree:ENSGT00680000100052
OMA:KVIRKFW EMBL:FP015925 RefSeq:XP_003121636.1 UniGene:Ssc.45003
Ensembl:ENSSSCT00000005252 GeneID:100517567 KEGG:ssc:100517567
Uniprot:F1SSV0
Length = 1566
Score = 148 (57.2 bits), Expect = 8.8e-15, Sum P(2) = 8.8e-15
Identities = 30/68 (44%), Positives = 46/68 (67%)
Query: 168 KVP--DDLVVESGKLKKLDEILPDLKKNGHRVLIFSQFIFVLDILGHYMDIRGWRHLRLD 225
++P + L+ +SGKL LD +L LK GHRVLI+SQ ++D+L YM R ++RLD
Sbjct: 1099 RIPGKESLITDSGKLYALDVLLTRLKSQGHRVLIYSQMTRMIDLLEEYMVYRKHTYMRLD 1158
Query: 226 GATQVSSR 233
G++++S R
Sbjct: 1159 GSSKISER 1166
Score = 112 (44.5 bits), Expect = 8.8e-15, Sum P(2) = 8.8e-15
Identities = 29/102 (28%), Positives = 49/102 (48%)
Query: 12 EDKRKEQATFEVEQVDQAKRIISPFMLRRLKKDVLTELPKKTALVIKVPMIPSQAEKYRG 71
E + ++ + Q+ + I+ PFMLRR+KKDV EL K +++ + Q Y+
Sbjct: 727 ESHAENKSAIDENQLSRLHMILKPFMLRRIKKDVENELSDKIEILMYCQLTSRQKLLYQA 786
Query: 72 L-----MEDFKKTANPEGSNRSNEISH-MSMFMMLRKMANHP 107
L +ED +++ S M++ M RK+ NHP
Sbjct: 787 LKNKISIEDLLQSSMGSTQQAQTTTSSLMNLVMQFRKVCNHP 828
Score = 43 (20.2 bits), Expect = 1.2e-07, Sum P(2) = 1.2e-07
Identities = 9/24 (37%), Positives = 14/24 (58%)
Query: 2 DSDSEDDARYEDKRKEQATFEVEQ 25
D SE D++ ED +E+ E E+
Sbjct: 133 DESSEADSQSEDNEEEEEDDEEEE 156
>UNIPROTKB|E1BAN8 [details] [associations]
symbol:INO80 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:2000045 "regulation of G1/S transition of mitotic cell
cycle" evidence=IEA] [GO:0071479 "cellular response to ionizing
radiation" evidence=IEA] [GO:0070914 "UV-damage excision repair"
evidence=IEA] [GO:0051225 "spindle assembly" evidence=IEA]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=IEA] [GO:0043014 "alpha-tubulin
binding" evidence=IEA] [GO:0034644 "cellular response to UV"
evidence=IEA] [GO:0031011 "Ino80 complex" evidence=IEA] [GO:0030307
"positive regulation of cell growth" evidence=IEA] [GO:0016887
"ATPase activity" evidence=IEA] [GO:0010571 "positive regulation of
DNA replication involved in S phase" evidence=IEA] [GO:0006338
"chromatin remodeling" evidence=IEA] [GO:0003678 "DNA helicase
activity" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0000724 "double-strand break repair via homologous
recombination" evidence=IEA] [GO:0000070 "mitotic sister chromatid
segregation" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001650 InterPro:IPR020838
Pfam:PF00176 Pfam:PF00271 Pfam:PF13892 PROSITE:PS51194
PROSITE:PS51413 SMART:SM00490 GO:GO:0005524 GO:GO:0030307
GO:GO:0051225 GO:GO:0003677 GO:GO:0045944 GO:GO:0016887
GO:GO:0006338 GO:GO:0000070 GO:GO:0031011 GO:GO:0000724
GO:GO:0034644 GO:GO:0071479 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0003678 GO:GO:0070914 GO:GO:2000045
GO:GO:0010571 KO:K11665 CTD:54617 GeneTree:ENSGT00680000100052
OMA:KVIRKFW EMBL:DAAA02028556 EMBL:DAAA02028557 IPI:IPI00685860
RefSeq:NP_001192313.1 UniGene:Bt.55708 Ensembl:ENSBTAT00000013708
GeneID:505992 KEGG:bta:505992 NextBio:20867400 Uniprot:E1BAN8
Length = 1566
Score = 148 (57.2 bits), Expect = 8.8e-15, Sum P(2) = 8.8e-15
Identities = 30/68 (44%), Positives = 46/68 (67%)
Query: 168 KVP--DDLVVESGKLKKLDEILPDLKKNGHRVLIFSQFIFVLDILGHYMDIRGWRHLRLD 225
++P + L+ +SGKL LD +L LK GHRVLI+SQ ++D+L YM R ++RLD
Sbjct: 1099 RIPGKESLITDSGKLYALDVLLTRLKSQGHRVLIYSQMTRMIDLLEEYMVYRKHTYMRLD 1158
Query: 226 GATQVSSR 233
G++++S R
Sbjct: 1159 GSSKISER 1166
Score = 112 (44.5 bits), Expect = 8.8e-15, Sum P(2) = 8.8e-15
Identities = 29/102 (28%), Positives = 49/102 (48%)
Query: 12 EDKRKEQATFEVEQVDQAKRIISPFMLRRLKKDVLTELPKKTALVIKVPMIPSQAEKYRG 71
E + ++ + Q+ + I+ PFMLRR+KKDV EL K +++ + Q Y+
Sbjct: 727 ESHAENKSAIDENQLSRLHMILKPFMLRRIKKDVENELSDKIEILMYCQLTSRQKLLYQA 786
Query: 72 L-----MEDFKKTANPEGSNRSNEISH-MSMFMMLRKMANHP 107
L +ED +++ S M++ M RK+ NHP
Sbjct: 787 LKNKISIEDLLQSSMGSTQQAQTTTSSLMNLVMQFRKVCNHP 828
>UNIPROTKB|E1BCV0 [details] [associations]
symbol:HELLS "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0046651 "lymphocyte proliferation" evidence=IEA]
[GO:0043066 "negative regulation of apoptotic process"
evidence=IEA] [GO:0031508 "centromeric heterochromatin assembly"
evidence=IEA] [GO:0010216 "maintenance of DNA methylation"
evidence=IEA] [GO:0006346 "methylation-dependent chromatin
silencing" evidence=IEA] [GO:0005721 "centromeric heterochromatin"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0003682
"chromatin binding" evidence=IEA] [GO:0001655 "urogenital system
development" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0005634 GO:GO:0003677 GO:GO:0003682
GO:GO:0001655 GO:GO:0004386 GO:GO:0005721 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0031508 GO:GO:0010216
OMA:ETFYTAI GO:GO:0006346 GO:GO:0046651
GeneTree:ENSGT00550000075106 EMBL:DAAA02058849 EMBL:DAAA02058850
EMBL:DAAA02058851 IPI:IPI00710948 Ensembl:ENSBTAT00000007848
Uniprot:E1BCV0
Length = 816
Score = 199 (75.1 bits), Expect = 9.9e-15, P = 9.9e-15
Identities = 67/215 (31%), Positives = 98/215 (45%)
Query: 31 RIISPFMLRRLKKDVLTELPKKTALVIKVPMIPSQAEKY-----RGLMEDF----KKTAN 81
+I++PF+LRRLK DV E+P K +V+ P+ Q Y R + F K+T
Sbjct: 420 QILTPFLLRRLKSDVALEVPPKREVVVYAPLSKKQEIFYTAIVNRTIANMFGSSEKETVE 479
Query: 82 PEGSNRSNEISHMSM-FMMLRKMANHPLGLRYYFQENTLREIADCLVEDPTYKGTNPQYI 140
+ R + S+ + + N L Q RE P N +
Sbjct: 480 LSPTGRPKRRTRKSVDYSKIDDFPNELEKLISQIQPEVDRERTIVETSVPIESEVNLK-- 537
Query: 141 LEDISWLSDYDIHQLSLKHKTLD--CAKYKVPDDLVVESGKLKKLDEILPDLKKNGHRVL 198
L++I L + L +D ++KV ++LV SGK LD +LP+LK GH+VL
Sbjct: 538 LQNIMMLLRKCCNHPYLIEYPIDPVTQEFKVDEELVTNSGKFLILDRMLPELKTRGHKVL 597
Query: 199 IFSQFIFVLDILGHYMDIRGWRHLRLDGATQVSSR 233
+FSQ +LDIL Y R + RLDG+ S R
Sbjct: 598 LFSQMTRMLDILMDYCHFRNFNFSRLDGSMSYSER 632
>UNIPROTKB|F1SC64 [details] [associations]
symbol:HELLS "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0046651 "lymphocyte proliferation" evidence=IEA]
[GO:0043066 "negative regulation of apoptotic process"
evidence=IEA] [GO:0031508 "centromeric heterochromatin assembly"
evidence=IEA] [GO:0010216 "maintenance of DNA methylation"
evidence=IEA] [GO:0006346 "methylation-dependent chromatin
silencing" evidence=IEA] [GO:0005721 "centromeric heterochromatin"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0003682
"chromatin binding" evidence=IEA] [GO:0001655 "urogenital system
development" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0005634 GO:GO:0003677 GO:GO:0003682
GO:GO:0001655 GO:GO:0004386 GO:GO:0005721 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0031508 GO:GO:0010216
OMA:ETFYTAI GO:GO:0006346 GO:GO:0046651
GeneTree:ENSGT00550000075106 EMBL:CU468514
Ensembl:ENSSSCT00000011474 Uniprot:F1SC64
Length = 838
Score = 199 (75.1 bits), Expect = 1.0e-14, P = 1.0e-14
Identities = 66/215 (30%), Positives = 99/215 (46%)
Query: 31 RIISPFMLRRLKKDVLTELPKKTALVIKVPMIPSQAEKY-----RGLMEDF----KKTAN 81
+I++PF+LRRLK DV E+P K +V+ P+ Q Y R + F K+T
Sbjct: 442 QILTPFLLRRLKSDVALEVPPKREVVVYAPLSKKQEVFYTAIVNRTITNMFGSSEKETVE 501
Query: 82 PEGSNRSNEISHMSM-FMMLRKMANHPLGLRYYFQENTLREIADCLVEDPTYKGTNPQYI 140
+ R + S+ + + N L Q RE A P N +
Sbjct: 502 LSPTGRPKRRTRKSIDYSKIDDFPNELEKLISQIQPEVDRERAVVETNIPVESEVNLK-- 559
Query: 141 LEDISWLSDYDIHQLSLKHKTLD--CAKYKVPDDLVVESGKLKKLDEILPDLKKNGHRVL 198
L++I L + L +D ++K+ ++LV SGK LD +LP+LK GH+VL
Sbjct: 560 LQNIMMLLRKCCNHPYLIEYPIDPVTQEFKIDEELVTNSGKFLILDRMLPELKIRGHKVL 619
Query: 199 IFSQFIFVLDILGHYMDIRGWRHLRLDGATQVSSR 233
+FSQ +LDIL Y R + RLDG+ + R
Sbjct: 620 LFSQMTRMLDILMDYCHFRNFNFSRLDGSMSYTER 654
>CGD|CAL0005422 [details] [associations]
symbol:ISW2 species:5476 "Candida albicans" [GO:0001410
"chlamydospore formation" evidence=IMP] [GO:0030447 "filamentous
growth" evidence=IMP] [GO:0071280 "cellular response to copper ion"
evidence=IMP] [GO:0035690 "cellular response to drug" evidence=IMP]
[GO:0008623 "CHRAC" evidence=IEA] [GO:0060195 "negative regulation
of antisense RNA transcription" evidence=IEA] [GO:0006338
"chromatin remodeling" evidence=IEA] [GO:0000183 "chromatin
silencing at rDNA" evidence=IEA] [GO:0006369 "termination of RNA
polymerase II transcription" evidence=IEA] [GO:0046020 "negative
regulation of transcription from RNA polymerase II promoter by
pheromones" evidence=IEA] [GO:0006348 "chromatin silencing at
telomere" evidence=IEA] [GO:0016584 "nucleosome positioning"
evidence=IEA] [GO:0015616 "DNA translocase activity" evidence=IEA]
[GO:0003697 "single-stranded DNA binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001005 InterPro:IPR001650
InterPro:IPR009057 InterPro:IPR015194 InterPro:IPR015195
Pfam:PF00176 Pfam:PF00271 Pfam:PF09110 Pfam:PF09111 PROSITE:PS51194
SMART:SM00490 SMART:SM00717 CGD:CAL0005422 GO:GO:0005524
GO:GO:0001410 GO:GO:0003677 Gene3D:1.10.10.60 SUPFAM:SSF46689
GO:GO:0071280 GO:GO:0035690 InterPro:IPR017884 PROSITE:PS51293
GO:GO:0004386 EMBL:AACQ01000074 GO:GO:0030447 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0016585
GO:GO:0031491 GO:GO:0043044 SUPFAM:SSF101224 RefSeq:XP_716066.1
ProteinModelPortal:Q5A310 STRING:Q5A310 GeneID:3642235
KEGG:cal:CaO19.7401 Uniprot:Q5A310
Length = 1056
Score = 130 (50.8 bits), Expect = 1.1e-14, Sum P(2) = 1.1e-14
Identities = 30/67 (44%), Positives = 38/67 (56%)
Query: 167 YKVPDDLVVESGKLKKLDEILPDLKKNGHRVLIFSQFIFVLDILGHYMDIRGWRHLRLDG 226
Y + LV SGK+ LD++L K G RVLIFSQ VLDIL Y R + + R+DG
Sbjct: 442 YTTDEHLVYNSGKMIILDKMLKKFKAEGSRVLIFSQMSRVLDILEDYCYFRDYEYCRIDG 501
Query: 227 ATQVSSR 233
+T R
Sbjct: 502 STSHEDR 508
Score = 130 (50.8 bits), Expect = 1.1e-14, Sum P(2) = 1.1e-14
Identities = 35/112 (31%), Positives = 56/112 (50%)
Query: 2 DSDSEDDARYEDKRKEQATFEVEQ------VDQAKRIISPFMLRRLKKDVLTELPKKTAL 55
DSD D+A ++++ E+ E +Q V + +++SPF+LRR+K DV L K
Sbjct: 320 DSDQFDEA-FDNQNSEELDEEEKQRRQDKAVSELHQLLSPFLLRRVKADVEKSLLPKIET 378
Query: 56 VIKVPMIPSQAEKYRGLMEDFKKTANPEGSNRSNEISHMSMFMMLRKMANHP 107
+ + M Q E Y+ L+E N R + +++ M LRK NHP
Sbjct: 379 NVYIGMTDMQVEWYKRLLEKDIDAVNGVVGKREGKTRLLNIVMQLRKCCNHP 430
Score = 38 (18.4 bits), Expect = 3.4e-05, Sum P(2) = 3.4e-05
Identities = 11/36 (30%), Positives = 19/36 (52%)
Query: 140 ILEDISWLSDYDIHQL--SLKHKT-LDCA-KYKVPD 171
ILED + DY+ ++ S H+ ++ +Y PD
Sbjct: 484 ILEDYCYFRDYEYCRIDGSTSHEDRIEAIDEYNAPD 519
>UNIPROTKB|Q5A310 [details] [associations]
symbol:ISW2 "Putative uncharacterized protein ISW2"
species:237561 "Candida albicans SC5314" [GO:0001410 "chlamydospore
formation" evidence=IMP] [GO:0030447 "filamentous growth"
evidence=IMP] [GO:0035690 "cellular response to drug" evidence=IMP]
[GO:0071280 "cellular response to copper ion" evidence=IMP]
InterPro:IPR000330 InterPro:IPR001005 InterPro:IPR001650
InterPro:IPR009057 InterPro:IPR015194 InterPro:IPR015195
Pfam:PF00176 Pfam:PF00271 Pfam:PF09110 Pfam:PF09111 PROSITE:PS51194
SMART:SM00490 SMART:SM00717 CGD:CAL0005422 GO:GO:0005524
GO:GO:0001410 GO:GO:0003677 Gene3D:1.10.10.60 SUPFAM:SSF46689
GO:GO:0071280 GO:GO:0035690 InterPro:IPR017884 PROSITE:PS51293
GO:GO:0004386 EMBL:AACQ01000074 GO:GO:0030447 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0016585
GO:GO:0031491 GO:GO:0043044 SUPFAM:SSF101224 RefSeq:XP_716066.1
ProteinModelPortal:Q5A310 STRING:Q5A310 GeneID:3642235
KEGG:cal:CaO19.7401 Uniprot:Q5A310
Length = 1056
Score = 130 (50.8 bits), Expect = 1.1e-14, Sum P(2) = 1.1e-14
Identities = 30/67 (44%), Positives = 38/67 (56%)
Query: 167 YKVPDDLVVESGKLKKLDEILPDLKKNGHRVLIFSQFIFVLDILGHYMDIRGWRHLRLDG 226
Y + LV SGK+ LD++L K G RVLIFSQ VLDIL Y R + + R+DG
Sbjct: 442 YTTDEHLVYNSGKMIILDKMLKKFKAEGSRVLIFSQMSRVLDILEDYCYFRDYEYCRIDG 501
Query: 227 ATQVSSR 233
+T R
Sbjct: 502 STSHEDR 508
Score = 130 (50.8 bits), Expect = 1.1e-14, Sum P(2) = 1.1e-14
Identities = 35/112 (31%), Positives = 56/112 (50%)
Query: 2 DSDSEDDARYEDKRKEQATFEVEQ------VDQAKRIISPFMLRRLKKDVLTELPKKTAL 55
DSD D+A ++++ E+ E +Q V + +++SPF+LRR+K DV L K
Sbjct: 320 DSDQFDEA-FDNQNSEELDEEEKQRRQDKAVSELHQLLSPFLLRRVKADVEKSLLPKIET 378
Query: 56 VIKVPMIPSQAEKYRGLMEDFKKTANPEGSNRSNEISHMSMFMMLRKMANHP 107
+ + M Q E Y+ L+E N R + +++ M LRK NHP
Sbjct: 379 NVYIGMTDMQVEWYKRLLEKDIDAVNGVVGKREGKTRLLNIVMQLRKCCNHP 430
Score = 38 (18.4 bits), Expect = 3.4e-05, Sum P(2) = 3.4e-05
Identities = 11/36 (30%), Positives = 19/36 (52%)
Query: 140 ILEDISWLSDYDIHQL--SLKHKT-LDCA-KYKVPD 171
ILED + DY+ ++ S H+ ++ +Y PD
Sbjct: 484 ILEDYCYFRDYEYCRIDGSTSHEDRIEAIDEYNAPD 519
>ZFIN|ZDB-GENE-070705-296 [details] [associations]
symbol:si:dkey-148b12.1 "si:dkey-148b12.1"
species:7955 "Danio rerio" [GO:0016817 "hydrolase activity, acting
on acid anhydrides" evidence=IEA] [GO:0043044 "ATP-dependent
chromatin remodeling" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0016818 "hydrolase
activity, acting on acid anhydrides, in phosphorus-containing
anhydrides" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0031491
"nucleosome binding" evidence=IEA] [GO:0003682 "chromatin binding"
evidence=IEA] [GO:0006338 "chromatin remodeling" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001005 InterPro:IPR001650
InterPro:IPR009057 InterPro:IPR015194 InterPro:IPR015195
InterPro:IPR020838 Pfam:PF00176 Pfam:PF00271 Pfam:PF09110
Pfam:PF09111 Pfam:PF13892 PROSITE:PS51194 SMART:SM00490
SMART:SM00717 ZFIN:ZDB-GENE-070705-296 GO:GO:0005524 GO:GO:0003677
Gene3D:1.10.10.60 SUPFAM:SSF46689 InterPro:IPR017884
PROSITE:PS51293 GO:GO:0004386 eggNOG:COG0553 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0016585 GO:GO:0031491
GO:GO:0043044 GeneTree:ENSGT00680000100002 HOGENOM:HOG000192862
SUPFAM:SSF101224 HOVERGEN:HBG056329 KO:K11727 OrthoDB:EOG44J2H9
EMBL:CR848717 EMBL:CU104724 IPI:IPI00488326 RefSeq:NP_001093467.1
UniGene:Dr.81160 SMR:A5WUY4 Ensembl:ENSDART00000020725
GeneID:559803 KEGG:dre:559803 OMA:IGHAWIN NextBio:20883144
Uniprot:A5WUY4
Length = 1036
Score = 145 (56.1 bits), Expect = 1.2e-14, Sum P(3) = 1.2e-14
Identities = 32/67 (47%), Positives = 42/67 (62%)
Query: 167 YKVPDDLVVESGKLKKLDEILPDLKKNGHRVLIFSQFIFVLDILGHYMDIRGWRHLRLDG 226
Y LV+ SGK+ LD++LP +++ G RVLIFSQ VLDIL Y RG+ + RLDG
Sbjct: 434 YTTDTHLVINSGKMVALDKLLPKVQEQGSRVLIFSQMTRVLDILEDYCMWRGFEYCRLDG 493
Query: 227 ATQVSSR 233
T +R
Sbjct: 494 NTPHEAR 500
Score = 107 (42.7 bits), Expect = 1.2e-14, Sum P(3) = 1.2e-14
Identities = 28/83 (33%), Positives = 46/83 (55%)
Query: 26 VDQAKRIISPFMLRRLKKDVLTELPKKTALVIKVPMIPSQAEKY-RGLMEDFKKTANPEG 84
V++ ++ PF+LRR+K +V LP K + I + + Q E Y R LM+D N G
Sbjct: 343 VERLHAVLRPFLLRRIKAEVEKSLPPKKEVKIYLGLSKMQREWYTRILMKDID-ILNSAG 401
Query: 85 SNRSNEISHMSMFMMLRKMANHP 107
+ +++ +++ M LRK NHP
Sbjct: 402 --KMDKMRLLNILMQLRKCCNHP 422
Score = 39 (18.8 bits), Expect = 1.2e-14, Sum P(3) = 1.2e-14
Identities = 13/36 (36%), Positives = 20/36 (55%)
Query: 4 DSEDDARYEDKRK-EQAT-FE--VEQVDQAKRIISP 35
+S D YE+KRK ++A FE ++Q + I P
Sbjct: 36 ESLADPEYEEKRKTDRANRFEFLLKQTELFAHFIQP 71
>UNIPROTKB|F1MFF9 [details] [associations]
symbol:Bt.62145 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0005634 "nucleus" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR001841 InterPro:IPR000330 InterPro:IPR000953
InterPro:IPR001650 InterPro:IPR001965 InterPro:IPR002464
InterPro:IPR012957 InterPro:IPR012958 InterPro:IPR019787
Pfam:PF00176 Pfam:PF00271 Pfam:PF00628 Pfam:PF08073 Pfam:PF08074
PROSITE:PS00690 PROSITE:PS50013 PROSITE:PS50016 PROSITE:PS51194
SMART:SM00184 SMART:SM00249 SMART:SM00298 SMART:SM00490
Pfam:PF00385 GO:GO:0005524 GO:GO:0005634 GO:GO:0006355
GO:GO:0046872 GO:GO:0003677 GO:GO:0008270 Gene3D:3.30.40.10
InterPro:IPR011011 InterPro:IPR013083 SUPFAM:SSF57903
InterPro:IPR019786 PROSITE:PS01359 InterPro:IPR016197
SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR023780 GeneTree:ENSGT00560000076896
InterPro:IPR009462 InterPro:IPR009463 Pfam:PF06461 Pfam:PF06465
OMA:KRIDDGD EMBL:DAAA02043090 IPI:IPI00688794
Ensembl:ENSBTAT00000010688 Uniprot:F1MFF9
Length = 1852
Score = 138 (53.6 bits), Expect = 1.3e-14, Sum P(3) = 1.3e-14
Identities = 29/89 (32%), Positives = 52/89 (58%)
Query: 22 EVEQVDQAKRI---ISPFMLRRLKKDVLTELPKKTALVIKVPMIPSQAEKYRGLMEDFKK 78
++ + DQ K++ + P MLRRLK DV +P KT L+++V + Q + Y+ ++ +
Sbjct: 856 DISKEDQIKKLHDLLGPHMLRRLKADVFKNMPAKTELIVRVELSQMQKKYYKFILTRNFE 915
Query: 79 TANPEGSNRSNEISHMSMFMMLRKMANHP 107
N +G N++S +++ M L+K NHP
Sbjct: 916 ALNSKGGG--NQVSLLNIMMDLKKCCNHP 942
Score = 125 (49.1 bits), Expect = 1.3e-14, Sum P(3) = 1.3e-14
Identities = 25/54 (46%), Positives = 37/54 (68%)
Query: 173 LVVESGKLKKLDEILPDLKKNGHRVLIFSQFIFVLDILGHYMDIRGWRHLRLDG 226
LV SGKL L ++L L+ GHRVLIFSQ +LD+L +++ G+++ R+DG
Sbjct: 965 LVKSSGKLMLLQKMLKKLRDEGHRVLIFSQMTKMLDLLEDFLEYEGYKYERIDG 1018
Score = 41 (19.5 bits), Expect = 3.7e-06, Sum P(3) = 3.7e-06
Identities = 20/83 (24%), Positives = 37/83 (44%)
Query: 116 ENTLREIADC-LVEDPTYKGTNPQYILEDISWLSDYDIHQLSLKHKTLDCAKYKVPDDLV 174
E LR A + +DP + L ++ L++ HQ H + + P + V
Sbjct: 1695 EEQLRRAAYLNMTQDPNHPAMALNARLAEVECLAES--HQ----HLSKESLAGNKPANAV 1748
Query: 175 VESGKLKKLDEILPDLKKNGHRV 197
+ L +L+E+L D+K + R+
Sbjct: 1749 LHK-VLNQLEELLSDMKADVTRL 1770
Score = 39 (18.8 bits), Expect = 1.3e-14, Sum P(3) = 1.3e-14
Identities = 5/18 (27%), Positives = 14/18 (77%)
Query: 10 RYEDKRKEQATFEVEQVD 27
+++D +Q T+E++++D
Sbjct: 559 KWKDLPYDQCTWEIDEID 576
>UNIPROTKB|F1SSZ2 [details] [associations]
symbol:CHD5 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005634 "nucleus" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR001841 InterPro:IPR000330 InterPro:IPR000953
InterPro:IPR001650 InterPro:IPR001965 InterPro:IPR002464
InterPro:IPR012957 InterPro:IPR012958 InterPro:IPR019787
Pfam:PF00176 Pfam:PF00271 Pfam:PF00628 Pfam:PF08073 Pfam:PF08074
PROSITE:PS00690 PROSITE:PS50013 PROSITE:PS50016 PROSITE:PS51194
SMART:SM00184 SMART:SM00249 SMART:SM00298 SMART:SM00490
Pfam:PF00385 GO:GO:0005524 GO:GO:0005634 GO:GO:0006355
GO:GO:0046872 GO:GO:0003677 GO:GO:0008270 Gene3D:3.30.40.10
InterPro:IPR011011 InterPro:IPR013083 SUPFAM:SSF57903
InterPro:IPR019786 PROSITE:PS01359 InterPro:IPR016197
SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR023780 GeneTree:ENSGT00560000076896
InterPro:IPR009462 InterPro:IPR009463 Pfam:PF06461 Pfam:PF06465
EMBL:FP102454 Ensembl:ENSSSCT00000019561 Uniprot:F1SSZ2
Length = 1667
Score = 138 (53.6 bits), Expect = 1.4e-14, Sum P(3) = 1.4e-14
Identities = 29/89 (32%), Positives = 52/89 (58%)
Query: 22 EVEQVDQAKRI---ISPFMLRRLKKDVLTELPKKTALVIKVPMIPSQAEKYRGLMEDFKK 78
++ + DQ K++ + P MLRRLK DV +P KT L+++V + Q + Y+ ++ +
Sbjct: 826 DISKEDQIKKLHDLLGPHMLRRLKADVFKNMPAKTELIVRVELSQMQKKYYKFILTRNFE 885
Query: 79 TANPEGSNRSNEISHMSMFMMLRKMANHP 107
N +G N++S +++ M L+K NHP
Sbjct: 886 ALNSKGGG--NQVSLLNIMMDLKKCCNHP 912
Score = 125 (49.1 bits), Expect = 1.4e-14, Sum P(3) = 1.4e-14
Identities = 25/54 (46%), Positives = 37/54 (68%)
Query: 173 LVVESGKLKKLDEILPDLKKNGHRVLIFSQFIFVLDILGHYMDIRGWRHLRLDG 226
LV SGKL L ++L L+ GHRVLIFSQ +LD+L +++ G+++ R+DG
Sbjct: 935 LVKSSGKLMLLQKMLKKLRDEGHRVLIFSQMTKMLDLLEDFLEYEGYKYERIDG 988
Score = 37 (18.1 bits), Expect = 1.4e-14, Sum P(3) = 1.4e-14
Identities = 5/18 (27%), Positives = 13/18 (72%)
Query: 10 RYEDKRKEQATFEVEQVD 27
+++D +Q T+E++ +D
Sbjct: 529 KWKDLPYDQCTWEIDDID 546
>RGD|1582725 [details] [associations]
symbol:Chd5 "chromodomain helicase DNA binding protein 5"
species:10116 "Rattus norvegicus" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] InterPro:IPR001841 InterPro:IPR000330
InterPro:IPR000953 InterPro:IPR001650 InterPro:IPR001965
InterPro:IPR002464 InterPro:IPR012957 InterPro:IPR012958
InterPro:IPR019787 Pfam:PF00176 Pfam:PF00271 Pfam:PF00628
Pfam:PF08073 Pfam:PF08074 PROSITE:PS00690 PROSITE:PS50013
PROSITE:PS50016 PROSITE:PS51194 SMART:SM00184 SMART:SM00249
SMART:SM00298 SMART:SM00490 Pfam:PF00385 RGD:1582725 GO:GO:0005524
GO:GO:0005634 GO:GO:0006355 GO:GO:0046872 GO:GO:0003677
GO:GO:0008270 Gene3D:3.30.40.10 InterPro:IPR011011
InterPro:IPR013083 SUPFAM:SSF57903 InterPro:IPR019786
PROSITE:PS01359 InterPro:IPR016197 SUPFAM:SSF54160
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR023780 GeneTree:ENSGT00560000076896 InterPro:IPR009462
InterPro:IPR009463 Pfam:PF06461 Pfam:PF06465 OrthoDB:EOG4WH8JX
IPI:IPI00948282 Ensembl:ENSRNOT00000067364 UCSC:RGD:1582725
ArrayExpress:D4A5U0 Uniprot:D4A5U0
Length = 1940
Score = 138 (53.6 bits), Expect = 1.5e-14, Sum P(3) = 1.5e-14
Identities = 29/89 (32%), Positives = 52/89 (58%)
Query: 22 EVEQVDQAKRI---ISPFMLRRLKKDVLTELPKKTALVIKVPMIPSQAEKYRGLMEDFKK 78
++ + DQ K++ + P MLRRLK DV +P KT L+++V + Q + Y+ ++ +
Sbjct: 908 DISKEDQIKKLHDLLGPHMLRRLKADVFKNMPAKTELIVRVELSQMQKKYYKFILTRNFE 967
Query: 79 TANPEGSNRSNEISHMSMFMMLRKMANHP 107
N +G N++S +++ M L+K NHP
Sbjct: 968 ALNSKGGG--NQVSLLNIMMDLKKCCNHP 994
Score = 125 (49.1 bits), Expect = 1.5e-14, Sum P(3) = 1.5e-14
Identities = 25/54 (46%), Positives = 37/54 (68%)
Query: 173 LVVESGKLKKLDEILPDLKKNGHRVLIFSQFIFVLDILGHYMDIRGWRHLRLDG 226
LV SGKL L ++L L+ GHRVLIFSQ +LD+L +++ G+++ R+DG
Sbjct: 1017 LVKSSGKLMLLQKMLKKLRDEGHRVLIFSQMTKMLDLLEDFLEYEGYKYERIDG 1070
Score = 39 (18.8 bits), Expect = 1.5e-14, Sum P(3) = 1.5e-14
Identities = 5/18 (27%), Positives = 14/18 (77%)
Query: 10 RYEDKRKEQATFEVEQVD 27
+++D +Q T+E++++D
Sbjct: 611 KWKDLPYDQCTWEIDEID 628
>UNIPROTKB|F1RIM3 [details] [associations]
symbol:CHD5 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005634 "nucleus" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR001841 InterPro:IPR000330 InterPro:IPR000953
InterPro:IPR001650 InterPro:IPR001965 InterPro:IPR002464
InterPro:IPR012957 InterPro:IPR012958 InterPro:IPR019787
Pfam:PF00176 Pfam:PF00271 Pfam:PF00628 Pfam:PF08073 Pfam:PF08074
PROSITE:PS00690 PROSITE:PS50013 PROSITE:PS50016 PROSITE:PS51194
SMART:SM00184 SMART:SM00249 SMART:SM00298 SMART:SM00490
Pfam:PF00385 GO:GO:0005524 GO:GO:0005634 GO:GO:0006355
GO:GO:0046872 GO:GO:0003677 GO:GO:0008270 Gene3D:3.30.40.10
InterPro:IPR011011 InterPro:IPR013083 SUPFAM:SSF57903
InterPro:IPR019786 PROSITE:PS01359 InterPro:IPR016197
SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR023780 GeneTree:ENSGT00560000076896
InterPro:IPR009462 InterPro:IPR009463 Pfam:PF06461 Pfam:PF06465
OMA:KRIDDGD EMBL:FP102454 Ensembl:ENSSSCT00000003736 Uniprot:F1RIM3
Length = 1723
Score = 138 (53.6 bits), Expect = 1.6e-14, Sum P(3) = 1.6e-14
Identities = 29/89 (32%), Positives = 52/89 (58%)
Query: 22 EVEQVDQAKRI---ISPFMLRRLKKDVLTELPKKTALVIKVPMIPSQAEKYRGLMEDFKK 78
++ + DQ K++ + P MLRRLK DV +P KT L+++V + Q + Y+ ++ +
Sbjct: 842 DISKEDQIKKLHDLLGPHMLRRLKADVFKNMPAKTELIVRVELSQMQKKYYKFILTRNFE 901
Query: 79 TANPEGSNRSNEISHMSMFMMLRKMANHP 107
N +G N++S +++ M L+K NHP
Sbjct: 902 ALNSKGGG--NQVSLLNIMMDLKKCCNHP 928
Score = 125 (49.1 bits), Expect = 1.6e-14, Sum P(3) = 1.6e-14
Identities = 25/54 (46%), Positives = 37/54 (68%)
Query: 173 LVVESGKLKKLDEILPDLKKNGHRVLIFSQFIFVLDILGHYMDIRGWRHLRLDG 226
LV SGKL L ++L L+ GHRVLIFSQ +LD+L +++ G+++ R+DG
Sbjct: 951 LVKSSGKLMLLQKMLKKLRDEGHRVLIFSQMTKMLDLLEDFLEYEGYKYERIDG 1004
Score = 37 (18.1 bits), Expect = 1.6e-14, Sum P(3) = 1.6e-14
Identities = 5/18 (27%), Positives = 13/18 (72%)
Query: 10 RYEDKRKEQATFEVEQVD 27
+++D +Q T+E++ +D
Sbjct: 545 KWKDLPYDQCTWEIDDID 562
>UNIPROTKB|F1S594 [details] [associations]
symbol:LOC100622433 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0005524 "ATP binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] InterPro:IPR000330 InterPro:IPR001487
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 Pfam:PF00439
PRINTS:PR00503 PROSITE:PS50014 PROSITE:PS51194 SMART:SM00297
SMART:SM00490 GO:GO:0005524 GO:GO:0003677 GO:GO:0004386
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 Gene3D:1.20.920.10
SUPFAM:SSF47370 PROSITE:PS00633 InterPro:IPR018359
GeneTree:ENSGT00550000074659 EMBL:FP102365
Ensembl:ENSSSCT00000014884 OMA:KSSGHER Uniprot:F1S594
Length = 866
Score = 136 (52.9 bits), Expect = 1.7e-14, Sum P(2) = 1.7e-14
Identities = 27/62 (43%), Positives = 38/62 (61%)
Query: 172 DLVVESGKLKKLDEILPDLKKNGHRVLIFSQFIFVLDILGHYMDIRGWRHLRLDGATQVS 231
DL SGK + LD ILP L+ H+VL+F Q ++ I+ Y RG+++LRLDG T+
Sbjct: 326 DLYRASGKFELLDRILPKLRATNHKVLLFCQMTSLMTIMEDYFAYRGFKYLRLDGTTKAE 385
Query: 232 SR 233
R
Sbjct: 386 DR 387
Score = 119 (46.9 bits), Expect = 1.7e-14, Sum P(2) = 1.7e-14
Identities = 33/90 (36%), Positives = 47/90 (52%)
Query: 31 RIISPFMLRRLKKDVLTELPKKTALVIKVPMIPSQAEKYRGLMEDFKKTANPEGSNRSNE 90
+++ PF+LRRLKK+V +LP+K VIK M Q YR + K +GS + +
Sbjct: 222 KVLRPFLLRRLKKEVEAQLPEKVEYVIKCDMSALQRVLYRHMQA--KGVLLTDGSEKDKK 279
Query: 91 -----ISHMSMFMMLRKMANHPLGLRYYFQ 115
+ M+ M LRK+ NHP Y FQ
Sbjct: 280 GKGGTKTLMNTIMQLRKICNHP----YMFQ 305
Score = 43 (20.2 bits), Expect = 0.00014, Sum P(2) = 0.00014
Identities = 10/24 (41%), Positives = 16/24 (66%)
Query: 156 SLKHKTLDCAKYKVP-DDLVVESG 178
S++ K L AKYK+ D V+++G
Sbjct: 461 SVEEKILAAAKYKLNVDQKVIQAG 484
Score = 37 (18.1 bits), Expect = 0.00059, Sum P(2) = 0.00059
Identities = 9/22 (40%), Positives = 13/22 (59%)
Query: 154 QLSLKHKTLDCAKYKVPDDLVV 175
Q L+H+ D + +VPDD V
Sbjct: 500 QAILEHEEQDEEEDEVPDDETV 521
>DICTYBASE|DDB_G0271052 [details] [associations]
symbol:snf2b "SNF2-related protein Snf2a"
species:44689 "Dictyostelium discoideum" [GO:0016818 "hydrolase
activity, acting on acid anhydrides, in phosphorus-containing
anhydrides" evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA;ISS] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0006357
"regulation of transcription from RNA polymerase II promoter"
evidence=ISS] [GO:0005654 "nucleoplasm" evidence=ISS]
InterPro:IPR000330 InterPro:IPR001487 InterPro:IPR001650
InterPro:IPR014978 Pfam:PF00176 Pfam:PF00271 PRINTS:PR00503
PROSITE:PS50014 PROSITE:PS51194 SMART:SM00297 SMART:SM00490
SMART:SM00951 dictyBase:DDB_G0271052 GO:GO:0005524 GO:GO:0005654
EMBL:AAFI02000005 GO:GO:0003677 GO:GO:0006357 GO:GO:0004386
InterPro:IPR011050 SUPFAM:SSF51126 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 SUPFAM:SSF47370
KO:K11647 InterPro:IPR014012 PROSITE:PS51204 RefSeq:XP_646649.1
ProteinModelPortal:Q55C32 EnsemblProtists:DDB0220695 GeneID:8617621
KEGG:ddi:DDB_G0271052 InParanoid:Q55C32 OMA:NINDNPN Uniprot:Q55C32
Length = 3247
Score = 144 (55.7 bits), Expect = 1.7e-14, Sum P(2) = 1.7e-14
Identities = 29/68 (42%), Positives = 44/68 (64%)
Query: 166 KYKVPDDLVVESGKLKKLDEILPDLKKNGHRVLIFSQFIFVLDILGHYMDIRGWRHLRLD 225
+Y + D+L+ +GK LD +LP LK GHRVLIFSQ +++IL + + ++ LRLD
Sbjct: 2014 EYNIDDNLIRYAGKFDLLDRLLPKLKAAGHRVLIFSQMTQLINILEVFFAYKDYKFLRLD 2073
Query: 226 GATQVSSR 233
G+T+ R
Sbjct: 2074 GSTKSDER 2081
Score = 121 (47.7 bits), Expect = 1.7e-14, Sum P(2) = 1.7e-14
Identities = 30/101 (29%), Positives = 55/101 (54%)
Query: 26 VDQAKRIISPFMLRRLKKDVLTELPKKTALVIKVPMIPSQAEKYRGLM-EDFKKTANPEG 84
+ + +++ PF+LRRLKK+V +LP K V+K M QA+ Y + + K A+ G
Sbjct: 1923 IQRLHKVLRPFLLRRLKKEVEAQLPDKVEKVLKCDMSAFQAKMYDLIKTKGVSKLASSGG 1982
Query: 85 SNRSNEISH--MSMFMMLRKMANHPLGL---RYYFQENTLR 120
++ + +++ + ++ LRK+ NHP Y +N +R
Sbjct: 1983 ADGNPKLAKGLKNTYVQLRKICNHPYLFYDDEYNIDDNLIR 2023
>UNIPROTKB|E2R1M3 [details] [associations]
symbol:CHD5 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005634 "nucleus" evidence=IEA] [GO:0008270
"zinc ion binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR001841 InterPro:IPR000330 InterPro:IPR000953
InterPro:IPR001650 InterPro:IPR001965 InterPro:IPR002464
InterPro:IPR012957 InterPro:IPR012958 InterPro:IPR019787
Pfam:PF00176 Pfam:PF00271 Pfam:PF00628 Pfam:PF08073 Pfam:PF08074
PROSITE:PS00690 PROSITE:PS50013 PROSITE:PS50016 PROSITE:PS51194
SMART:SM00184 SMART:SM00249 SMART:SM00298 SMART:SM00490
Pfam:PF00385 GO:GO:0005524 GO:GO:0005634 GO:GO:0006355
GO:GO:0046872 GO:GO:0003677 GO:GO:0008270 Gene3D:3.30.40.10
InterPro:IPR011011 InterPro:IPR013083 SUPFAM:SSF57903
InterPro:IPR019786 PROSITE:PS01359 InterPro:IPR016197
SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR023780 GeneTree:ENSGT00560000076896
InterPro:IPR009462 InterPro:IPR009463 Pfam:PF06461 Pfam:PF06465
OMA:KRIDDGD EMBL:AAEX03003895 EMBL:AAEX03003896 EMBL:AAEX03003897
Ensembl:ENSCAFT00000031086 Uniprot:E2R1M3
Length = 1812
Score = 138 (53.6 bits), Expect = 1.9e-14, Sum P(3) = 1.9e-14
Identities = 29/89 (32%), Positives = 52/89 (58%)
Query: 22 EVEQVDQAKRI---ISPFMLRRLKKDVLTELPKKTALVIKVPMIPSQAEKYRGLMEDFKK 78
++ + DQ K++ + P MLRRLK DV +P KT L+++V + Q + Y+ ++ +
Sbjct: 773 DISKEDQIKKLHDLLGPHMLRRLKADVFKNMPAKTELIVRVELSQMQKKYYKFILTRNFE 832
Query: 79 TANPEGSNRSNEISHMSMFMMLRKMANHP 107
N +G N++S +++ M L+K NHP
Sbjct: 833 ALNSKGGG--NQVSLLNIMMDLKKCCNHP 859
Score = 125 (49.1 bits), Expect = 1.9e-14, Sum P(3) = 1.9e-14
Identities = 25/54 (46%), Positives = 37/54 (68%)
Query: 173 LVVESGKLKKLDEILPDLKKNGHRVLIFSQFIFVLDILGHYMDIRGWRHLRLDG 226
LV SGKL L ++L L+ GHRVLIFSQ +LD+L +++ G+++ R+DG
Sbjct: 882 LVKSSGKLMLLQKMLKKLRDEGHRVLIFSQMTKMLDLLEDFLEYEGYKYERIDG 935
Score = 41 (19.5 bits), Expect = 5.5e-06, Sum P(3) = 5.5e-06
Identities = 20/83 (24%), Positives = 37/83 (44%)
Query: 116 ENTLREIADC-LVEDPTYKGTNPQYILEDISWLSDYDIHQLSLKHKTLDCAKYKVPDDLV 174
E LR A + +DP + L ++ L++ HQ H + + P + V
Sbjct: 1661 EEQLRRAAYLNMTQDPNHPAMALNARLAEVECLAES--HQ----HLSKESLAGNKPANAV 1714
Query: 175 VESGKLKKLDEILPDLKKNGHRV 197
+ L +L+E+L D+K + R+
Sbjct: 1715 LHK-VLNQLEELLSDMKADVTRL 1736
Score = 37 (18.1 bits), Expect = 1.9e-14, Sum P(3) = 1.9e-14
Identities = 5/18 (27%), Positives = 13/18 (72%)
Query: 10 RYEDKRKEQATFEVEQVD 27
+++D +Q T+E++ +D
Sbjct: 476 KWKDLPYDQCTWEIDDID 493
>MGI|MGI:1935129 [details] [associations]
symbol:Smarca5 "SWI/SNF related, matrix associated, actin
dependent regulator of chromatin, subfamily a, member 5"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000183 "chromatin silencing at rDNA"
evidence=IDA] [GO:0000793 "condensed chromosome" evidence=ISO]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003677 "DNA
binding" evidence=ISO] [GO:0003682 "chromatin binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005515 "protein binding" evidence=IPI] [GO:0005524 "ATP
binding" evidence=ISO] [GO:0005634 "nucleus" evidence=ISO;IDA]
[GO:0005677 "chromatin silencing complex" evidence=IDA] [GO:0006200
"ATP catabolic process" evidence=ISO] [GO:0006302 "double-strand
break repair" evidence=IMP] [GO:0006333 "chromatin assembly or
disassembly" evidence=IDA] [GO:0006334 "nucleosome assembly"
evidence=ISO] [GO:0006338 "chromatin remodeling"
evidence=ISO;IGI;IDA] [GO:0006352 "DNA-dependent transcription,
initiation" evidence=ISO] [GO:0009790 "embryo development"
evidence=IMP] [GO:0016568 "chromatin modification" evidence=IEA]
[GO:0016584 "nucleosome positioning" evidence=ISO] [GO:0016589
"NURF complex" evidence=ISO] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0016817 "hydrolase activity, acting on acid
anhydrides" evidence=IEA] [GO:0016818 "hydrolase activity, acting
on acid anhydrides, in phosphorus-containing anhydrides"
evidence=IEA] [GO:0016887 "ATPase activity" evidence=ISO]
[GO:0031213 "RSF complex" evidence=ISO] [GO:0031491 "nucleosome
binding" evidence=IEA] [GO:0043044 "ATP-dependent chromatin
remodeling" evidence=ISO] [GO:0045893 "positive regulation of
transcription, DNA-dependent" evidence=IMP;TAS] InterPro:IPR000330
InterPro:IPR001005 InterPro:IPR001650 InterPro:IPR009057
InterPro:IPR015194 InterPro:IPR015195 InterPro:IPR020838
Pfam:PF00176 Pfam:PF00271 Pfam:PF09110 Pfam:PF09111 Pfam:PF13892
PROSITE:PS00690 PROSITE:PS51194 SMART:SM00490 SMART:SM00717
MGI:MGI:1935129 GO:GO:0005524 GO:GO:0045893 GO:GO:0005730
GO:GO:0003677 GO:GO:0006352 GO:GO:0016887 Gene3D:1.10.10.60
SUPFAM:SSF46689 GO:GO:0006338 GO:GO:0009790 GO:GO:0043596
GO:GO:0006333 InterPro:IPR017884 PROSITE:PS51293 GO:GO:0000183
GO:GO:0006302 GO:GO:0004386 GO:GO:0000793 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0031491
GO:GO:0043044 GO:GO:0016584 GO:GO:0006334 GO:GO:0005677
GO:GO:0016589 GeneTree:ENSGT00680000100002 HOGENOM:HOG000192862
KO:K11654 SUPFAM:SSF101224 OMA:EDYCHWR GO:GO:0031213
HOVERGEN:HBG056329 OrthoDB:EOG44J2H9 CTD:8467 EMBL:AF375046
EMBL:AF325921 EMBL:BC021922 EMBL:BC053069 EMBL:AK039811
EMBL:AK052320 IPI:IPI00396739 RefSeq:NP_444354.2 UniGene:Mm.246803
ProteinModelPortal:Q91ZW3 SMR:Q91ZW3 DIP:DIP-36073N IntAct:Q91ZW3
MINT:MINT-1867515 STRING:Q91ZW3 PhosphoSite:Q91ZW3 PaxDb:Q91ZW3
PRIDE:Q91ZW3 Ensembl:ENSMUST00000043359 GeneID:93762 KEGG:mmu:93762
UCSC:uc009mja.1 InParanoid:Q91ZW3 NextBio:351651 Bgee:Q91ZW3
Genevestigator:Q91ZW3 GermOnline:ENSMUSG00000031715 Uniprot:Q91ZW3
Length = 1051
Score = 141 (54.7 bits), Expect = 1.9e-14, Sum P(2) = 1.9e-14
Identities = 33/67 (49%), Positives = 39/67 (58%)
Query: 167 YKVPDDLVVESGKLKKLDEILPDLKKNGHRVLIFSQFIFVLDILGHYMDIRGWRHLRLDG 226
Y LV SGK+ LD++LP LK+ G RVLIFSQ VLDIL Y R + + RLDG
Sbjct: 471 YTTDMHLVTNSGKMVVLDKLLPKLKEQGSRVLIFSQMTRVLDILEDYCMWRNYEYCRLDG 530
Query: 227 ATQVSSR 233
T R
Sbjct: 531 QTPHDER 537
Score = 114 (45.2 bits), Expect = 1.9e-14, Sum P(2) = 1.9e-14
Identities = 30/83 (36%), Positives = 46/83 (55%)
Query: 26 VDQAKRIISPFMLRRLKKDVLTELPKKTALVIKVPMIPSQAEKY-RGLMEDFKKTANPEG 84
V++ ++ PF+LRR+K DV LP K + I V + Q E Y R LM+D N G
Sbjct: 380 VERLHMVLRPFLLRRIKADVEKSLPPKKEVKIYVGLSKMQREWYTRILMKDID-ILNSAG 438
Query: 85 SNRSNEISHMSMFMMLRKMANHP 107
+ +++ +++ M LRK NHP
Sbjct: 439 --KMDKMRLLNILMQLRKCCNHP 459
>RGD|1308832 [details] [associations]
symbol:Smarca5 "SWI/SNF related, matrix associated, actin
dependent regulator of chromatin, subfamily a, member 5"
species:10116 "Rattus norvegicus" [GO:0000183 "chromatin silencing
at rDNA" evidence=ISO] [GO:0000793 "condensed chromosome"
evidence=ISO] [GO:0003677 "DNA binding" evidence=IEA;ISO]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA;ISO] [GO:0005634 "nucleus" evidence=IEA;ISO]
[GO:0005677 "chromatin silencing complex" evidence=ISO] [GO:0005730
"nucleolus" evidence=ISO] [GO:0006200 "ATP catabolic process"
evidence=ISO] [GO:0006302 "double-strand break repair"
evidence=ISO] [GO:0006333 "chromatin assembly or disassembly"
evidence=ISO] [GO:0006334 "nucleosome assembly" evidence=ISO]
[GO:0006338 "chromatin remodeling" evidence=ISO] [GO:0006352
"DNA-dependent transcription, initiation" evidence=ISO] [GO:0009790
"embryo development" evidence=ISO] [GO:0016584 "nucleosome
positioning" evidence=ISO] [GO:0016589 "NURF complex" evidence=ISO]
[GO:0016887 "ATPase activity" evidence=ISO] [GO:0031213 "RSF
complex" evidence=ISO] [GO:0031491 "nucleosome binding"
evidence=IEA] [GO:0043044 "ATP-dependent chromatin remodeling"
evidence=IEA;ISO] [GO:0045893 "positive regulation of
transcription, DNA-dependent" evidence=ISO] [GO:0043596 "nuclear
replication fork" evidence=ISO] [GO:0042393 "histone binding"
evidence=ISO] InterPro:IPR000330 InterPro:IPR001005
InterPro:IPR001650 InterPro:IPR009057 InterPro:IPR015194
InterPro:IPR015195 InterPro:IPR020838 Pfam:PF00176 Pfam:PF00271
Pfam:PF09110 Pfam:PF09111 Pfam:PF13892 PROSITE:PS51194
SMART:SM00490 SMART:SM00717 RGD:1308832 GO:GO:0005524 GO:GO:0003677
Gene3D:1.10.10.60 SUPFAM:SSF46689 InterPro:IPR017884
PROSITE:PS51293 GO:GO:0004386 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0016585 GO:GO:0031491 GO:GO:0043044
GeneTree:ENSGT00680000100002 SUPFAM:SSF101224 OMA:EDYCHWR
IPI:IPI00359419 PRIDE:F1LNL2 Ensembl:ENSRNOT00000024568
UCSC:RGD:1308832 ArrayExpress:F1LNL2 Uniprot:F1LNL2
Length = 1051
Score = 141 (54.7 bits), Expect = 1.9e-14, Sum P(2) = 1.9e-14
Identities = 33/67 (49%), Positives = 39/67 (58%)
Query: 167 YKVPDDLVVESGKLKKLDEILPDLKKNGHRVLIFSQFIFVLDILGHYMDIRGWRHLRLDG 226
Y LV SGK+ LD++LP LK+ G RVLIFSQ VLDIL Y R + + RLDG
Sbjct: 471 YTTDMHLVTNSGKMVVLDKLLPKLKEQGSRVLIFSQMTRVLDILEDYCMWRNYEYCRLDG 530
Query: 227 ATQVSSR 233
T R
Sbjct: 531 QTPHDER 537
Score = 114 (45.2 bits), Expect = 1.9e-14, Sum P(2) = 1.9e-14
Identities = 30/83 (36%), Positives = 46/83 (55%)
Query: 26 VDQAKRIISPFMLRRLKKDVLTELPKKTALVIKVPMIPSQAEKY-RGLMEDFKKTANPEG 84
V++ ++ PF+LRR+K DV LP K + I V + Q E Y R LM+D N G
Sbjct: 380 VERLHMVLRPFLLRRIKADVEKSLPPKKEVKIYVGLSKMQREWYTRILMKDID-ILNSAG 438
Query: 85 SNRSNEISHMSMFMMLRKMANHP 107
+ +++ +++ M LRK NHP
Sbjct: 439 --KMDKMRLLNILMQLRKCCNHP 459
>UNIPROTKB|F1N052 [details] [associations]
symbol:SMARCA5 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0043596 "nuclear replication fork" evidence=IEA]
[GO:0043044 "ATP-dependent chromatin remodeling" evidence=IEA]
[GO:0042393 "histone binding" evidence=IEA] [GO:0031213 "RSF
complex" evidence=IEA] [GO:0016887 "ATPase activity" evidence=IEA]
[GO:0016589 "NURF complex" evidence=IEA] [GO:0016584 "nucleosome
positioning" evidence=IEA] [GO:0009790 "embryo development"
evidence=IEA] [GO:0006352 "DNA-dependent transcription, initiation"
evidence=IEA] [GO:0006334 "nucleosome assembly" evidence=IEA]
[GO:0006302 "double-strand break repair" evidence=IEA] [GO:0005730
"nucleolus" evidence=IEA] [GO:0005677 "chromatin silencing complex"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0003677
"DNA binding" evidence=IEA] [GO:0000793 "condensed chromosome"
evidence=IEA] [GO:0000183 "chromatin silencing at rDNA"
evidence=IEA] [GO:0031491 "nucleosome binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] InterPro:IPR000330
InterPro:IPR001005 InterPro:IPR001650 InterPro:IPR009057
InterPro:IPR015194 InterPro:IPR015195 InterPro:IPR020838
Pfam:PF00176 Pfam:PF00271 Pfam:PF09110 Pfam:PF09111 Pfam:PF13892
PROSITE:PS51194 SMART:SM00490 SMART:SM00717 GO:GO:0005524
GO:GO:0005730 GO:GO:0003677 GO:GO:0006352 GO:GO:0016887
Gene3D:1.10.10.60 SUPFAM:SSF46689 GO:GO:0009790 GO:GO:0043596
InterPro:IPR017884 PROSITE:PS51293 GO:GO:0000183 GO:GO:0006302
GO:GO:0004386 GO:GO:0000793 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0031491 GO:GO:0043044 GO:GO:0016584
GO:GO:0006334 GO:GO:0005677 GO:GO:0016589
GeneTree:ENSGT00680000100002 SUPFAM:SSF101224 OMA:EDYCHWR
GO:GO:0031213 EMBL:DAAA02044371 IPI:IPI00868566 UniGene:Bt.103096
Ensembl:ENSBTAT00000004408 Uniprot:F1N052
Length = 1052
Score = 141 (54.7 bits), Expect = 1.9e-14, Sum P(2) = 1.9e-14
Identities = 33/67 (49%), Positives = 39/67 (58%)
Query: 167 YKVPDDLVVESGKLKKLDEILPDLKKNGHRVLIFSQFIFVLDILGHYMDIRGWRHLRLDG 226
Y LV SGK+ LD++LP LK+ G RVLIFSQ VLDIL Y R + + RLDG
Sbjct: 472 YTTDMHLVTNSGKMVVLDKLLPKLKEQGSRVLIFSQMTRVLDILEDYCMWRNYEYCRLDG 531
Query: 227 ATQVSSR 233
T R
Sbjct: 532 QTPHDER 538
Score = 114 (45.2 bits), Expect = 1.9e-14, Sum P(2) = 1.9e-14
Identities = 30/83 (36%), Positives = 46/83 (55%)
Query: 26 VDQAKRIISPFMLRRLKKDVLTELPKKTALVIKVPMIPSQAEKY-RGLMEDFKKTANPEG 84
V++ ++ PF+LRR+K DV LP K + I V + Q E Y R LM+D N G
Sbjct: 381 VERLHMVLRPFLLRRIKADVEKSLPPKKEVKIYVGLSKMQREWYTRILMKDID-ILNSAG 439
Query: 85 SNRSNEISHMSMFMMLRKMANHP 107
+ +++ +++ M LRK NHP
Sbjct: 440 --KMDKMRLLNILMQLRKCCNHP 460
>UNIPROTKB|E2QWV0 [details] [associations]
symbol:SMARCA5 "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0043596 "nuclear replication fork"
evidence=IEA] [GO:0043044 "ATP-dependent chromatin remodeling"
evidence=IEA] [GO:0042393 "histone binding" evidence=IEA]
[GO:0031213 "RSF complex" evidence=IEA] [GO:0016887 "ATPase
activity" evidence=IEA] [GO:0016589 "NURF complex" evidence=IEA]
[GO:0016584 "nucleosome positioning" evidence=IEA] [GO:0009790
"embryo development" evidence=IEA] [GO:0006352 "DNA-dependent
transcription, initiation" evidence=IEA] [GO:0006334 "nucleosome
assembly" evidence=IEA] [GO:0006302 "double-strand break repair"
evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA] [GO:0005677
"chromatin silencing complex" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0000793 "condensed chromosome" evidence=IEA] [GO:0000183
"chromatin silencing at rDNA" evidence=IEA] [GO:0031491 "nucleosome
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] InterPro:IPR000330 InterPro:IPR001005
InterPro:IPR001650 InterPro:IPR009057 InterPro:IPR015194
InterPro:IPR015195 InterPro:IPR020838 Pfam:PF00176 Pfam:PF00271
Pfam:PF09110 Pfam:PF09111 Pfam:PF13892 PROSITE:PS51194
SMART:SM00490 SMART:SM00717 GO:GO:0005524 GO:GO:0005730
GO:GO:0003677 GO:GO:0006352 GO:GO:0016887 Gene3D:1.10.10.60
SUPFAM:SSF46689 GO:GO:0009790 GO:GO:0043596 InterPro:IPR017884
PROSITE:PS51293 GO:GO:0000183 GO:GO:0006302 GO:GO:0004386
GO:GO:0000793 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0031491 GO:GO:0043044 GO:GO:0016584 GO:GO:0006334
GO:GO:0005677 GO:GO:0016589 GeneTree:ENSGT00680000100002 KO:K11654
SUPFAM:SSF101224 OMA:EDYCHWR GO:GO:0031213 CTD:8467
EMBL:AAEX03010002 RefSeq:XP_532676.1 ProteinModelPortal:E2QWV0
Ensembl:ENSCAFT00000012062 GeneID:475451 KEGG:cfa:475451
NextBio:20851293 Uniprot:E2QWV0
Length = 1052
Score = 141 (54.7 bits), Expect = 1.9e-14, Sum P(2) = 1.9e-14
Identities = 33/67 (49%), Positives = 39/67 (58%)
Query: 167 YKVPDDLVVESGKLKKLDEILPDLKKNGHRVLIFSQFIFVLDILGHYMDIRGWRHLRLDG 226
Y LV SGK+ LD++LP LK+ G RVLIFSQ VLDIL Y R + + RLDG
Sbjct: 472 YTTDMHLVTNSGKMVVLDKLLPKLKEQGSRVLIFSQMTRVLDILEDYCMWRNYEYCRLDG 531
Query: 227 ATQVSSR 233
T R
Sbjct: 532 QTPHDER 538
Score = 114 (45.2 bits), Expect = 1.9e-14, Sum P(2) = 1.9e-14
Identities = 30/83 (36%), Positives = 46/83 (55%)
Query: 26 VDQAKRIISPFMLRRLKKDVLTELPKKTALVIKVPMIPSQAEKY-RGLMEDFKKTANPEG 84
V++ ++ PF+LRR+K DV LP K + I V + Q E Y R LM+D N G
Sbjct: 381 VERLHMVLRPFLLRRIKADVEKSLPPKKEVKIYVGLSKMQREWYTRILMKDID-ILNSAG 439
Query: 85 SNRSNEISHMSMFMMLRKMANHP 107
+ +++ +++ M LRK NHP
Sbjct: 440 --KMDKMRLLNILMQLRKCCNHP 460
>UNIPROTKB|O60264 [details] [associations]
symbol:SMARCA5 "SWI/SNF-related matrix-associated
actin-dependent regulator of chromatin subfamily A member 5"
species:9606 "Homo sapiens" [GO:0031491 "nucleosome binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0000183 "chromatin silencing at rDNA" evidence=IEA] [GO:0005677
"chromatin silencing complex" evidence=IEA] [GO:0006302
"double-strand break repair" evidence=IEA] [GO:0009790 "embryo
development" evidence=IEA] [GO:0006334 "nucleosome assembly"
evidence=IDA;TAS] [GO:0016887 "ATPase activity" evidence=IDA]
[GO:0003677 "DNA binding" evidence=IDA] [GO:0005634 "nucleus"
evidence=IDA] [GO:0006338 "chromatin remodeling" evidence=IDA]
[GO:0006352 "DNA-dependent transcription, initiation" evidence=IDA]
[GO:0016584 "nucleosome positioning" evidence=IDA] [GO:0031213 "RSF
complex" evidence=IPI] [GO:0042393 "histone binding" evidence=IDA]
[GO:0005524 "ATP binding" evidence=IDA] [GO:0000793 "condensed
chromosome" evidence=IDA] [GO:0005515 "protein binding"
evidence=IPI] [GO:0016589 "NURF complex" evidence=IDA] [GO:0006357
"regulation of transcription from RNA polymerase II promoter"
evidence=TAS] [GO:0005654 "nucleoplasm" evidence=TAS] [GO:0034080
"CENP-A containing nucleosome assembly at centromere" evidence=TAS]
[GO:0043596 "nuclear replication fork" evidence=IDA] [GO:0043044
"ATP-dependent chromatin remodeling" evidence=IMP] [GO:0006200 "ATP
catabolic process" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] InterPro:IPR000330 InterPro:IPR001005
InterPro:IPR001650 InterPro:IPR009057 InterPro:IPR015194
InterPro:IPR015195 InterPro:IPR020838 Pfam:PF00176 Pfam:PF00271
Pfam:PF09110 Pfam:PF09111 Pfam:PF13892 PROSITE:PS00690
PROSITE:PS51194 SMART:SM00490 SMART:SM00717 GO:GO:0005524
Reactome:REACT_115566 GO:GO:0005654 GO:GO:0005730 GO:GO:0003677
GO:GO:0006352 GO:GO:0006357 GO:GO:0016887 Gene3D:1.10.10.60
SUPFAM:SSF46689 GO:GO:0009790 InterPro:IPR017884 PROSITE:PS51293
GO:GO:0000183 GO:GO:0006302 GO:GO:0004386 GO:GO:0000793
GO:GO:0034080 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0031491 GO:GO:0016584 GO:GO:0005677
GO:GO:0016589 HOGENOM:HOG000192862 KO:K11654 SUPFAM:SSF101224
OMA:EDYCHWR GO:GO:0031213 HOVERGEN:HBG056329 OrthoDB:EOG44J2H9
EMBL:AB010882 EMBL:BC023144 IPI:IPI00297211 RefSeq:NP_003592.3
UniGene:Hs.558422 ProteinModelPortal:O60264 SMR:O60264
IntAct:O60264 MINT:MINT-2981772 STRING:O60264 PhosphoSite:O60264
PaxDb:O60264 PeptideAtlas:O60264 PRIDE:O60264 DNASU:8467
Ensembl:ENST00000283131 GeneID:8467 KEGG:hsa:8467 UCSC:uc003ijg.3
CTD:8467 GeneCards:GC04P144434 HGNC:HGNC:11101 HPA:CAB005227
HPA:HPA008751 MIM:603375 neXtProt:NX_O60264 PharmGKB:PA35951
InParanoid:O60264 PhylomeDB:O60264 GenomeRNAi:8467 NextBio:31688
ArrayExpress:O60264 Bgee:O60264 CleanEx:HS_SMARCA5
Genevestigator:O60264 GermOnline:ENSG00000153147 Uniprot:O60264
Length = 1052
Score = 141 (54.7 bits), Expect = 1.9e-14, Sum P(2) = 1.9e-14
Identities = 33/67 (49%), Positives = 39/67 (58%)
Query: 167 YKVPDDLVVESGKLKKLDEILPDLKKNGHRVLIFSQFIFVLDILGHYMDIRGWRHLRLDG 226
Y LV SGK+ LD++LP LK+ G RVLIFSQ VLDIL Y R + + RLDG
Sbjct: 472 YTTDMHLVTNSGKMVVLDKLLPKLKEQGSRVLIFSQMTRVLDILEDYCMWRNYEYCRLDG 531
Query: 227 ATQVSSR 233
T R
Sbjct: 532 QTPHDER 538
Score = 114 (45.2 bits), Expect = 1.9e-14, Sum P(2) = 1.9e-14
Identities = 30/83 (36%), Positives = 46/83 (55%)
Query: 26 VDQAKRIISPFMLRRLKKDVLTELPKKTALVIKVPMIPSQAEKY-RGLMEDFKKTANPEG 84
V++ ++ PF+LRR+K DV LP K + I V + Q E Y R LM+D N G
Sbjct: 381 VERLHMVLRPFLLRRIKADVEKSLPPKKEVKIYVGLSKMQREWYTRILMKDID-ILNSAG 439
Query: 85 SNRSNEISHMSMFMMLRKMANHP 107
+ +++ +++ M LRK NHP
Sbjct: 440 --KMDKMRLLNILMQLRKCCNHP 460
>UNIPROTKB|F1RRG9 [details] [associations]
symbol:SMARCA5 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0043596 "nuclear replication fork" evidence=IEA]
[GO:0043044 "ATP-dependent chromatin remodeling" evidence=IEA]
[GO:0042393 "histone binding" evidence=IEA] [GO:0031213 "RSF
complex" evidence=IEA] [GO:0016887 "ATPase activity" evidence=IEA]
[GO:0016589 "NURF complex" evidence=IEA] [GO:0016584 "nucleosome
positioning" evidence=IEA] [GO:0009790 "embryo development"
evidence=IEA] [GO:0006352 "DNA-dependent transcription, initiation"
evidence=IEA] [GO:0006334 "nucleosome assembly" evidence=IEA]
[GO:0006302 "double-strand break repair" evidence=IEA] [GO:0005730
"nucleolus" evidence=IEA] [GO:0005677 "chromatin silencing complex"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0003677
"DNA binding" evidence=IEA] [GO:0000793 "condensed chromosome"
evidence=IEA] [GO:0000183 "chromatin silencing at rDNA"
evidence=IEA] [GO:0031491 "nucleosome binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] InterPro:IPR000330
InterPro:IPR001005 InterPro:IPR001650 InterPro:IPR009057
InterPro:IPR015194 InterPro:IPR015195 InterPro:IPR020838
Pfam:PF00176 Pfam:PF00271 Pfam:PF09110 Pfam:PF09111 Pfam:PF13892
PROSITE:PS51194 SMART:SM00490 SMART:SM00717 GO:GO:0005524
GO:GO:0005730 GO:GO:0003677 GO:GO:0006352 GO:GO:0016887
Gene3D:1.10.10.60 SUPFAM:SSF46689 GO:GO:0009790 GO:GO:0043596
InterPro:IPR017884 PROSITE:PS51293 GO:GO:0000183 GO:GO:0006302
GO:GO:0004386 GO:GO:0000793 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0031491 GO:GO:0043044 GO:GO:0016584
GO:GO:0006334 GO:GO:0005677 GO:GO:0016589
GeneTree:ENSGT00680000100002 KO:K11654 SUPFAM:SSF101224 OMA:EDYCHWR
GO:GO:0031213 CTD:8467 EMBL:CU463195 RefSeq:XP_003129222.2
UniGene:Ssc.97261 Ensembl:ENSSSCT00000009907 GeneID:100188903
KEGG:ssc:100188903 ArrayExpress:F1RRG9 Uniprot:F1RRG9
Length = 1052
Score = 141 (54.7 bits), Expect = 1.9e-14, Sum P(2) = 1.9e-14
Identities = 33/67 (49%), Positives = 39/67 (58%)
Query: 167 YKVPDDLVVESGKLKKLDEILPDLKKNGHRVLIFSQFIFVLDILGHYMDIRGWRHLRLDG 226
Y LV SGK+ LD++LP LK+ G RVLIFSQ VLDIL Y R + + RLDG
Sbjct: 472 YTTDMHLVTNSGKMVVLDKLLPKLKEQGSRVLIFSQMTRVLDILEDYCMWRNYEYCRLDG 531
Query: 227 ATQVSSR 233
T R
Sbjct: 532 QTPHDER 538
Score = 114 (45.2 bits), Expect = 1.9e-14, Sum P(2) = 1.9e-14
Identities = 30/83 (36%), Positives = 46/83 (55%)
Query: 26 VDQAKRIISPFMLRRLKKDVLTELPKKTALVIKVPMIPSQAEKY-RGLMEDFKKTANPEG 84
V++ ++ PF+LRR+K DV LP K + I V + Q E Y R LM+D N G
Sbjct: 381 VERLHMVLRPFLLRRIKADVEKSLPPKKEVKIYVGLSKMQREWYTRILMKDID-ILNSAG 439
Query: 85 SNRSNEISHMSMFMMLRKMANHP 107
+ +++ +++ M LRK NHP
Sbjct: 440 --KMDKMRLLNILMQLRKCCNHP 460
>UNIPROTKB|K7GT64 [details] [associations]
symbol:LOC100622433 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0005524 "ATP binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] InterPro:IPR000330 InterPro:IPR001487
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 Pfam:PF00439
PRINTS:PR00503 PROSITE:PS50014 PROSITE:PS51194 SMART:SM00297
SMART:SM00490 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
Gene3D:1.20.920.10 SUPFAM:SSF47370 PROSITE:PS00633
InterPro:IPR018359 GeneTree:ENSGT00550000074659 EMBL:FP102365
Ensembl:ENSSSCT00000034320 Uniprot:K7GT64
Length = 980
Score = 136 (52.9 bits), Expect = 2.2e-14, Sum P(2) = 2.2e-14
Identities = 27/62 (43%), Positives = 38/62 (61%)
Query: 172 DLVVESGKLKKLDEILPDLKKNGHRVLIFSQFIFVLDILGHYMDIRGWRHLRLDGATQVS 231
DL SGK + LD ILP L+ H+VL+F Q ++ I+ Y RG+++LRLDG T+
Sbjct: 407 DLYRASGKFELLDRILPKLRATNHKVLLFCQMTSLMTIMEDYFAYRGFKYLRLDGTTKAE 466
Query: 232 SR 233
R
Sbjct: 467 DR 468
Score = 119 (46.9 bits), Expect = 2.2e-14, Sum P(2) = 2.2e-14
Identities = 33/90 (36%), Positives = 47/90 (52%)
Query: 31 RIISPFMLRRLKKDVLTELPKKTALVIKVPMIPSQAEKYRGLMEDFKKTANPEGSNRSNE 90
+++ PF+LRRLKK+V +LP+K VIK M Q YR + K +GS + +
Sbjct: 303 KVLRPFLLRRLKKEVEAQLPEKVEYVIKCDMSALQRVLYRHMQA--KGVLLTDGSEKDKK 360
Query: 91 -----ISHMSMFMMLRKMANHPLGLRYYFQ 115
+ M+ M LRK+ NHP Y FQ
Sbjct: 361 GKGGTKTLMNTIMQLRKICNHP----YMFQ 386
Score = 43 (20.2 bits), Expect = 0.00019, Sum P(2) = 0.00019
Identities = 10/24 (41%), Positives = 16/24 (66%)
Query: 156 SLKHKTLDCAKYKVP-DDLVVESG 178
S++ K L AKYK+ D V+++G
Sbjct: 542 SVEEKILAAAKYKLNVDQKVIQAG 565
>UNIPROTKB|E1C0M8 [details] [associations]
symbol:SMARCA5 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0004386 "helicase activity" evidence=IEA]
[GO:0031491 "nucleosome binding" evidence=IEA] [GO:0000183
"chromatin silencing at rDNA" evidence=IEA] [GO:0000793 "condensed
chromosome" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005677 "chromatin
silencing complex" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] [GO:0006302 "double-strand break repair"
evidence=IEA] [GO:0006334 "nucleosome assembly" evidence=IEA]
[GO:0006352 "DNA-dependent transcription, initiation" evidence=IEA]
[GO:0009790 "embryo development" evidence=IEA] [GO:0016584
"nucleosome positioning" evidence=IEA] [GO:0016589 "NURF complex"
evidence=IEA] [GO:0016887 "ATPase activity" evidence=IEA]
[GO:0031213 "RSF complex" evidence=IEA] [GO:0042393 "histone
binding" evidence=IEA] [GO:0043044 "ATP-dependent chromatin
remodeling" evidence=IEA] [GO:0043596 "nuclear replication fork"
evidence=IEA] InterPro:IPR000330 InterPro:IPR001005
InterPro:IPR001650 InterPro:IPR009057 InterPro:IPR015194
InterPro:IPR015195 InterPro:IPR020838 Pfam:PF00176 Pfam:PF00271
Pfam:PF09110 Pfam:PF09111 Pfam:PF13892 PROSITE:PS51194
SMART:SM00490 SMART:SM00717 GO:GO:0005524 GO:GO:0005730
GO:GO:0003677 GO:GO:0006352 GO:GO:0016887 Gene3D:1.10.10.60
SUPFAM:SSF46689 GO:GO:0043596 InterPro:IPR017884 PROSITE:PS51293
GO:GO:0000183 GO:GO:0006302 GO:GO:0004386 GO:GO:0000793
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0031491
GO:GO:0043044 GO:GO:0016584 GO:GO:0006334 GO:GO:0005677
GO:GO:0016589 GeneTree:ENSGT00680000100002 SUPFAM:SSF101224
OMA:EDYCHWR GO:GO:0031213 EMBL:AADN02016239 EMBL:AADN02016240
IPI:IPI00577188 Ensembl:ENSGALT00000016121 ArrayExpress:E1C0M8
Uniprot:E1C0M8
Length = 1038
Score = 141 (54.7 bits), Expect = 2.4e-14, Sum P(2) = 2.4e-14
Identities = 33/67 (49%), Positives = 39/67 (58%)
Query: 167 YKVPDDLVVESGKLKKLDEILPDLKKNGHRVLIFSQFIFVLDILGHYMDIRGWRHLRLDG 226
Y LV SGK+ LD++LP LK+ G RVLIFSQ VLDIL Y R + + RLDG
Sbjct: 457 YTTDMHLVTNSGKMVVLDKLLPKLKEQGSRVLIFSQMTRVLDILEDYCMWRNYEYCRLDG 516
Query: 227 ATQVSSR 233
T R
Sbjct: 517 QTPHDER 523
Score = 113 (44.8 bits), Expect = 2.4e-14, Sum P(2) = 2.4e-14
Identities = 30/83 (36%), Positives = 46/83 (55%)
Query: 26 VDQAKRIISPFMLRRLKKDVLTELPKKTALVIKVPMIPSQAEKY-RGLMEDFKKTANPEG 84
V++ ++ PF+LRR+K DV LP K + I V + Q E Y R LM+D N G
Sbjct: 366 VERLHMVLRPFLLRRIKADVEKSLPPKKEVKIYVGLSKMQREWYTRILMKDID-ILNSAG 424
Query: 85 SNRSNEISHMSMFMMLRKMANHP 107
+ +++ +++ M LRK NHP
Sbjct: 425 --KLDKMRLLNILMQLRKCCNHP 445
>UNIPROTKB|Q8TDI0 [details] [associations]
symbol:CHD5 "Chromodomain-helicase-DNA-binding protein 5"
species:9606 "Homo sapiens" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0016568 "chromatin
modification" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR001841 InterPro:IPR000330 InterPro:IPR000953
InterPro:IPR001650 InterPro:IPR001965 InterPro:IPR002464
InterPro:IPR012957 InterPro:IPR012958 InterPro:IPR019787
Pfam:PF00176 Pfam:PF00271 Pfam:PF00628 Pfam:PF08073 Pfam:PF08074
PROSITE:PS00690 PROSITE:PS50013 PROSITE:PS50016 PROSITE:PS51194
SMART:SM00184 SMART:SM00249 SMART:SM00298 SMART:SM00490
EMBL:AF425231 Pfam:PF00385 GO:GO:0005524 GO:GO:0005634
GO:GO:0006355 GO:GO:0046872 GO:GO:0003677 GO:GO:0008270
GO:GO:0006351 GO:GO:0016568 Gene3D:3.30.40.10 InterPro:IPR011011
InterPro:IPR013083 SUPFAM:SSF57903 InterPro:IPR019786
PROSITE:PS01359 InterPro:IPR016197 SUPFAM:SSF54160 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 EMBL:AL031847
GO:GO:0008026 InterPro:IPR023780 PROSITE:PS00598
HOGENOM:HOG000231124 InterPro:IPR009462 InterPro:IPR009463
Pfam:PF06461 Pfam:PF06465 HOVERGEN:HBG005326 OrthoDB:EOG4WH8JX
EMBL:AL035406 EMBL:AL117491 EMBL:AB007913 IPI:IPI00152535
PIR:T17269 RefSeq:NP_056372.1 UniGene:Hs.522898
ProteinModelPortal:Q8TDI0 SMR:Q8TDI0 IntAct:Q8TDI0 STRING:Q8TDI0
PhosphoSite:Q8TDI0 DMDM:51701343 PaxDb:Q8TDI0 PRIDE:Q8TDI0
DNASU:26038 Ensembl:ENST00000262450 GeneID:26038 KEGG:hsa:26038
UCSC:uc001amb.2 CTD:26038 GeneCards:GC01M006096 HGNC:HGNC:16816
HPA:HPA015809 MIM:610771 neXtProt:NX_Q8TDI0 PharmGKB:PA134969178
InParanoid:Q8TDI0 KO:K14435 OMA:KRIDDGD PhylomeDB:Q8TDI0
ChiTaRS:CHD5 GenomeRNAi:26038 NextBio:47863 ArrayExpress:Q8TDI0
Bgee:Q8TDI0 CleanEx:HS_CHD5 Genevestigator:Q8TDI0
GermOnline:ENSG00000116254 Uniprot:Q8TDI0
Length = 1954
Score = 138 (53.6 bits), Expect = 2.4e-14, Sum P(3) = 2.4e-14
Identities = 29/89 (32%), Positives = 52/89 (58%)
Query: 22 EVEQVDQAKRI---ISPFMLRRLKKDVLTELPKKTALVIKVPMIPSQAEKYRGLMEDFKK 78
++ + DQ K++ + P MLRRLK DV +P KT L+++V + Q + Y+ ++ +
Sbjct: 910 DISKEDQIKKLHDLLGPHMLRRLKADVFKNMPAKTELIVRVELSQMQKKYYKFILTRNFE 969
Query: 79 TANPEGSNRSNEISHMSMFMMLRKMANHP 107
N +G N++S +++ M L+K NHP
Sbjct: 970 ALNSKGGG--NQVSLLNIMMDLKKCCNHP 996
Score = 125 (49.1 bits), Expect = 2.4e-14, Sum P(3) = 2.4e-14
Identities = 25/54 (46%), Positives = 37/54 (68%)
Query: 173 LVVESGKLKKLDEILPDLKKNGHRVLIFSQFIFVLDILGHYMDIRGWRHLRLDG 226
LV SGKL L ++L L+ GHRVLIFSQ +LD+L +++ G+++ R+DG
Sbjct: 1019 LVKSSGKLMLLQKMLKKLRDEGHRVLIFSQMTKMLDLLEDFLEYEGYKYERIDG 1072
Score = 37 (18.1 bits), Expect = 2.4e-14, Sum P(3) = 2.4e-14
Identities = 5/18 (27%), Positives = 13/18 (72%)
Query: 10 RYEDKRKEQATFEVEQVD 27
+++D +Q T+E++ +D
Sbjct: 613 KWKDLPYDQCTWEIDDID 630
>UNIPROTKB|I3LTT5 [details] [associations]
symbol:SMARCA1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005524 "ATP binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR020838 Pfam:PF00176 Pfam:PF00271 Pfam:PF13892
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003677
GO:GO:0004386 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GeneTree:ENSGT00680000100002 EMBL:CU695129
Ensembl:ENSSSCT00000027860 Uniprot:I3LTT5
Length = 778
Score = 137 (53.3 bits), Expect = 2.5e-14, Sum P(3) = 2.5e-14
Identities = 31/67 (46%), Positives = 40/67 (59%)
Query: 167 YKVPDDLVVESGKLKKLDEILPDLKKNGHRVLIFSQFIFVLDILGHYMDIRGWRHLRLDG 226
Y + +V SGK+ LD++L LK+ G RVLIFSQ +LDIL Y RG+ + RLDG
Sbjct: 478 YTTDEHIVSNSGKMVVLDKLLAKLKEQGSRVLIFSQMTRLLDILEDYCMWRGYEYCRLDG 537
Query: 227 ATQVSSR 233
T R
Sbjct: 538 QTPHEER 544
Score = 111 (44.1 bits), Expect = 2.5e-14, Sum P(3) = 2.5e-14
Identities = 28/83 (33%), Positives = 46/83 (55%)
Query: 26 VDQAKRIISPFMLRRLKKDVLTELPKKTALVIKVPMIPSQAEKY-RGLMEDFKKTANPEG 84
V++ ++ PF+LRR+K DV LP K + I + + Q E Y + LM+D N G
Sbjct: 387 VERLHAVLKPFLLRRIKTDVEKSLPPKKEIKIYLGLSKMQREWYTKILMKDID-VLNSAG 445
Query: 85 SNRSNEISHMSMFMMLRKMANHP 107
+ +++ +++ M LRK NHP
Sbjct: 446 --KMDKMRLLNILMQLRKCCNHP 466
Score = 39 (18.8 bits), Expect = 2.5e-14, Sum P(3) = 2.5e-14
Identities = 13/37 (35%), Positives = 20/37 (54%)
Query: 3 SDSEDDARYEDKRK-EQAT-FE--VEQVDQAKRIISP 35
S+ E D YE+K K ++A FE ++Q + I P
Sbjct: 78 SEKEMDPEYEEKMKADRAKRFEFLLKQTELFAHFIQP 114
>UNIPROTKB|H0YJG4 [details] [associations]
symbol:CHD8 "Chromodomain-helicase-DNA-binding protein 8"
species:9606 "Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0003677 GO:GO:0004386 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 EMBL:AL135744 EMBL:AL161747
HGNC:HGNC:20153 Ensembl:ENST00000555935 Uniprot:H0YJG4
Length = 873
Score = 129 (50.5 bits), Expect = 2.5e-14, Sum P(2) = 2.5e-14
Identities = 31/85 (36%), Positives = 49/85 (57%)
Query: 24 EQVDQAKRIISPFMLRRLKKDVLTELPKKTALVIKVPMIPSQAEKYRGLME-DFKKTANP 82
EQV + + I+ P MLRRLK+DV L K +I+V + Q + YR ++E +F +
Sbjct: 242 EQVQKLQAILKPMMLRRLKEDVEKNLAPKQETIIEVELTNIQKKYYRAILEKNFSFLS-- 299
Query: 83 EGSNRSNEISHMSMFMMLRKMANHP 107
+G+ +N + ++ M LRK NHP
Sbjct: 300 KGAGHTNMPNLLNTMMELRKCCNHP 324
Score = 126 (49.4 bits), Expect = 2.5e-14, Sum P(2) = 2.5e-14
Identities = 27/61 (44%), Positives = 40/61 (65%)
Query: 173 LVVESGKLKKLDEILPDLKKNGHRVLIFSQFIFVLDILGHYMDIRGWRHLRLDGATQVSS 232
+V +GKL +D++LP LK GH+VLIFSQ + LDIL Y+ R + + R+DG + +
Sbjct: 354 MVRSAGKLVLIDKLLPKLKAGGHKVLIFSQMVRCLDILEDYLIQRRYLYERIDGRVRGNL 413
Query: 233 R 233
R
Sbjct: 414 R 414
Score = 38 (18.4 bits), Expect = 3.0e-05, Sum P(2) = 3.0e-05
Identities = 14/49 (28%), Positives = 23/49 (46%)
Query: 143 DISWLSDYDIHQLSLKHKTLDCAKYKVPDDLVVESGKLKKLDEILPDLK 191
DIS L D + Q K LD ++LV+++ +++K LK
Sbjct: 591 DIS-LDDPNFWQKWAKKADLDMDLLNSKNNLVIDTPRVRKQTRHFSTLK 638
Score = 38 (18.4 bits), Expect = 6.9e-05, Sum P(2) = 6.9e-05
Identities = 8/18 (44%), Positives = 11/18 (61%)
Query: 132 YKGTNP--QYILEDISWL 147
YK N +Y LE ++WL
Sbjct: 31 YKNRNQLREYQLEGVNWL 48
>POMBASE|SPAC1250.01 [details] [associations]
symbol:snf21 "ATP-dependent DNA helicase Snf21"
species:4896 "Schizosaccharomyces pombe" [GO:0000790 "nuclear
chromatin" evidence=IC] [GO:0000991 "core RNA polymerase II binding
transcription factor activity" evidence=ISO] [GO:0003677 "DNA
binding" evidence=IC] [GO:0004003 "ATP-dependent DNA helicase
activity" evidence=ISS] [GO:0005524 "ATP binding" evidence=IC]
[GO:0005634 "nucleus" evidence=IDA] [GO:0006338 "chromatin
remodeling" evidence=ISO] [GO:0006366 "transcription from RNA
polymerase II promoter" evidence=IDA] [GO:0016586 "RSC complex"
evidence=IDA] InterPro:IPR000330 InterPro:IPR001487
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 Pfam:PF00439
PRINTS:PR00503 PROSITE:PS50014 PROSITE:PS51194 SMART:SM00297
SMART:SM00490 PomBase:SPAC1250.01 GO:GO:0005524 EMBL:CU329670
GenomeReviews:CU329670_GR GO:GO:0003677 GO:GO:0006338 GO:GO:0000790
GO:GO:0004003 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0016586 GO:GO:0000991 Gene3D:1.20.920.10
SUPFAM:SSF47370 PROSITE:PS00633 InterPro:IPR018359
InterPro:IPR013999 InterPro:IPR014012 InterPro:IPR006562
Pfam:PF07529 SMART:SM00573 PROSITE:PS51204 HOGENOM:HOG000172362
KO:K11786 EMBL:AB162438 PIR:T37561 RefSeq:NP_594861.1
ProteinModelPortal:Q9UTN6 DIP:DIP-48388N STRING:Q9UTN6
EnsemblFungi:SPAC1250.01.1 GeneID:2542638 KEGG:spo:SPAC1250.01
OMA:WAPSISA OrthoDB:EOG4D565R NextBio:20803687 Uniprot:Q9UTN6
Length = 1199
Score = 148 (57.2 bits), Expect = 2.6e-14, Sum P(2) = 2.6e-14
Identities = 27/57 (47%), Positives = 40/57 (70%)
Query: 177 SGKLKKLDEILPDLKKNGHRVLIFSQFIFVLDILGHYMDIRGWRHLRLDGATQVSSR 233
SGK + LD ILP L ++GHR+L+F Q +++I+ Y+ R WR+LRLDG+T+ R
Sbjct: 735 SGKFELLDRILPKLFRSGHRILMFFQMTQIMNIMEDYLHYRQWRYLRLDGSTKADDR 791
Score = 105 (42.0 bits), Expect = 2.6e-14, Sum P(2) = 2.6e-14
Identities = 25/77 (32%), Positives = 38/77 (49%)
Query: 31 RIISPFMLRRLKKDVLTELPKKTALVIKVPMIPSQAEKYRGLMEDFKKTANPEGSNRSNE 90
+++ PF+LRRLKKDV ELP K VI+ M Q + Y + + ++
Sbjct: 635 KVLRPFLLRRLKKDVEAELPDKVEKVIRCQMSGLQQKLYYQMKKHGMLYVEDAKRGKTGI 694
Query: 91 ISHMSMFMMLRKMANHP 107
+ M L+K+ NHP
Sbjct: 695 KGLQNTVMQLKKICNHP 711
>POMBASE|SPAC29B12.01 [details] [associations]
symbol:ino80 "SNF2 family helicase Ino80" species:4896
"Schizosaccharomyces pombe" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0006281 "DNA repair"
evidence=ISO] [GO:0006338 "chromatin remodeling" evidence=IPI]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0031011 "Ino80 complex" evidence=IDA] [GO:0043140
"ATP-dependent 3'-5' DNA helicase activity" evidence=ISO]
InterPro:IPR000330 InterPro:IPR001650 InterPro:IPR020838
Pfam:PF00176 Pfam:PF00271 Pfam:PF13892 PROSITE:PS51194
PROSITE:PS51413 SMART:SM00490 PomBase:SPAC29B12.01 GO:GO:0005524
EMBL:CU329670 GO:GO:0006355 GenomeReviews:CU329670_GR GO:GO:0003677
GO:GO:0006281 GO:GO:0006351 GO:GO:0016568 GO:GO:0031011 HSSP:Q97XQ5
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0043140 KO:K11665 HOGENOM:HOG000048482 OrthoDB:EOG41G6C8
RefSeq:NP_001018299.1 ProteinModelPortal:O14148 STRING:O14148
EnsemblFungi:SPAC29B12.01.1 GeneID:3361566 KEGG:spo:SPAC29B12.01
OMA:INDHNSA NextBio:20811604 Uniprot:O14148
Length = 1604
Score = 156 (60.0 bits), Expect = 2.7e-14, Sum P(2) = 2.7e-14
Identities = 29/68 (42%), Positives = 49/68 (72%)
Query: 168 KVPDDL--VVESGKLKKLDEILPDLKKNGHRVLIFSQFIFVLDILGHYMDIRGWRHLRLD 225
++P L + +SGKL KLD++L +LK N HRVLI+ Q ++D++ Y+ R +++LRLD
Sbjct: 1417 RIPSMLRFIADSGKLSKLDKLLVELKANDHRVLIYFQMTRMIDLMEEYLTFRQYKYLRLD 1476
Query: 226 GATQVSSR 233
G++++S R
Sbjct: 1477 GSSKISQR 1484
Score = 96 (38.9 bits), Expect = 2.7e-14, Sum P(2) = 2.7e-14
Identities = 27/99 (27%), Positives = 44/99 (44%)
Query: 12 EDKRKEQATFEVEQVDQAKRIISPFMLRRLKKDVLTELPKKTALVIKVPMIPSQAEKYRG 71
E + +Q+ + I+ PFMLRR+KK+V +EL +K + + Q Y+
Sbjct: 1043 ESHAQSNTQLNEQQLKRLHMILKPFMLRRVKKNVQSELGEKIEKEVYCDLTQRQKILYQA 1102
Query: 72 LMEDFKKTANPEGSNRSNE---ISHMSMFMMLRKMANHP 107
L E + + S M++ M RK+ NHP
Sbjct: 1103 LRRQISIAELLEKAILGGDDTVASIMNLVMQFRKVCNHP 1141
>WB|WBGene00000482 [details] [associations]
symbol:chd-3 species:6239 "Caenorhabditis elegans"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0016818 "hydrolase activity,
acting on acid anhydrides, in phosphorus-containing anhydrides"
evidence=IEA] [GO:0006338 "chromatin remodeling" evidence=TAS]
[GO:0040027 "negative regulation of vulval development"
evidence=IMP] [GO:0046580 "negative regulation of Ras protein
signal transduction" evidence=IMP] [GO:0001709 "cell fate
determination" evidence=IMP] [GO:0000118 "histone deacetylase
complex" evidence=ISS] [GO:0003682 "chromatin binding"
evidence=TAS] [GO:0003678 "DNA helicase activity" evidence=ISS]
InterPro:IPR001841 InterPro:IPR000330 InterPro:IPR000953
InterPro:IPR001650 InterPro:IPR001965 InterPro:IPR002464
InterPro:IPR012957 InterPro:IPR012958 InterPro:IPR019787
Pfam:PF00176 Pfam:PF00271 Pfam:PF00628 Pfam:PF08073 Pfam:PF08074
PROSITE:PS00690 PROSITE:PS50013 PROSITE:PS50016 PROSITE:PS51194
SMART:SM00184 SMART:SM00249 SMART:SM00298 SMART:SM00490
Pfam:PF00385 GO:GO:0005524 GO:GO:0006355 GO:GO:0046872
GO:GO:0003677 GO:GO:0008270 GO:GO:0003682 GO:GO:0006338
Gene3D:3.30.40.10 InterPro:IPR011011 InterPro:IPR013083
SUPFAM:SSF57903 InterPro:IPR019786 PROSITE:PS01359 GO:GO:0040027
InterPro:IPR016197 SUPFAM:SSF54160 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0003678
GO:GO:0001709 GO:GO:0046580 GO:GO:0008026 InterPro:IPR023780
PROSITE:PS00598 GO:GO:0000118 GeneTree:ENSGT00560000076896
EMBL:AF308444 EMBL:Z67884 EMBL:Z67881 PIR:T20160 RefSeq:NP_510140.1
UniGene:Cel.16950 ProteinModelPortal:Q22516 SMR:Q22516
STRING:Q22516 PaxDb:Q22516 EnsemblMetazoa:T14G8.1 GeneID:181421
KEGG:cel:CELE_T14G8.1 UCSC:T14G8.1 CTD:181421 WormBase:T14G8.1
HOGENOM:HOG000231124 InParanoid:Q22516 OMA:INIIMEL NextBio:913870
InterPro:IPR009462 InterPro:IPR009463 Pfam:PF06461 Pfam:PF06465
Uniprot:Q22516
Length = 1787
Score = 134 (52.2 bits), Expect = 3.3e-14, Sum P(3) = 3.3e-14
Identities = 27/84 (32%), Positives = 49/84 (58%)
Query: 24 EQVDQAKRIISPFMLRRLKKDVLTELPKKTALVIKVPMIPSQAEKYRGLMEDFKKTANPE 83
+Q+++ ++ P MLRRLK DVLT +P K L+++V + Q + Y+ ++ N +
Sbjct: 831 DQIEKLHNLLGPHMLRRLKADVLTGMPSKQELIVRVELSAMQKKYYKNILTRNFDALNVK 890
Query: 84 GSNRSNEISHMSMFMMLRKMANHP 107
N ++S +++ M L+K NHP
Sbjct: 891 --NGGTQMSLINIIMELKKCCNHP 912
Score = 129 (50.5 bits), Expect = 3.3e-14, Sum P(3) = 3.3e-14
Identities = 25/55 (45%), Positives = 37/55 (67%)
Query: 173 LVVESGKLKKLDEILPDLKKNGHRVLIFSQFIFVLDILGHYMDIRGWRHLRLDGA 227
L+ +GK L ++L LK GHRVLIFSQ +LDIL + D+ G+++ R+DG+
Sbjct: 935 LIKNAGKFVLLQKMLRKLKDGGHRVLIFSQMTMMLDILEDFCDVEGYKYERIDGS 989
Score = 37 (18.1 bits), Expect = 5.9e-05, Sum P(3) = 5.9e-05
Identities = 8/18 (44%), Positives = 13/18 (72%)
Query: 180 LKKLDEILPDLKKNGHRV 197
L +LD++L DLK + R+
Sbjct: 1645 LAQLDDLLSDLKTDVARL 1662
Score = 36 (17.7 bits), Expect = 3.3e-14, Sum P(3) = 3.3e-14
Identities = 11/31 (35%), Positives = 16/31 (51%)
Query: 2 DSDSEDDARYEDKRKEQATFEVEQVDQAKRI 32
DSD E +A + K+Q E E+ + RI
Sbjct: 202 DSDQEFEALIKQHEKQQD--EAEKGKEEARI 230
Score = 36 (17.7 bits), Expect = 0.00033, Sum P(3) = 0.00033
Identities = 8/22 (36%), Positives = 13/22 (59%)
Query: 158 KHKTLDCAK-YKVPDDLVVESG 178
K + +D K Y+V D + E+G
Sbjct: 592 KREKIDILKKYEVQPDFISETG 613
>UNIPROTKB|Q22516 [details] [associations]
symbol:chd-3 "Chromodomain-helicase-DNA-binding protein 3
homolog" species:6239 "Caenorhabditis elegans" [GO:0032508 "DNA
duplex unwinding" evidence=ISS] InterPro:IPR001841
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001650
InterPro:IPR001965 InterPro:IPR002464 InterPro:IPR012957
InterPro:IPR012958 InterPro:IPR019787 Pfam:PF00176 Pfam:PF00271
Pfam:PF00628 Pfam:PF08073 Pfam:PF08074 PROSITE:PS00690
PROSITE:PS50013 PROSITE:PS50016 PROSITE:PS51194 SMART:SM00184
SMART:SM00249 SMART:SM00298 SMART:SM00490 Pfam:PF00385
GO:GO:0005524 GO:GO:0006355 GO:GO:0046872 GO:GO:0003677
GO:GO:0008270 GO:GO:0003682 GO:GO:0006338 Gene3D:3.30.40.10
InterPro:IPR011011 InterPro:IPR013083 SUPFAM:SSF57903
InterPro:IPR019786 PROSITE:PS01359 GO:GO:0040027 InterPro:IPR016197
SUPFAM:SSF54160 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0003678 GO:GO:0001709 GO:GO:0046580
GO:GO:0008026 InterPro:IPR023780 PROSITE:PS00598 GO:GO:0000118
GeneTree:ENSGT00560000076896 EMBL:AF308444 EMBL:Z67884 EMBL:Z67881
PIR:T20160 RefSeq:NP_510140.1 UniGene:Cel.16950
ProteinModelPortal:Q22516 SMR:Q22516 STRING:Q22516 PaxDb:Q22516
EnsemblMetazoa:T14G8.1 GeneID:181421 KEGG:cel:CELE_T14G8.1
UCSC:T14G8.1 CTD:181421 WormBase:T14G8.1 HOGENOM:HOG000231124
InParanoid:Q22516 OMA:INIIMEL NextBio:913870 InterPro:IPR009462
InterPro:IPR009463 Pfam:PF06461 Pfam:PF06465 Uniprot:Q22516
Length = 1787
Score = 134 (52.2 bits), Expect = 3.3e-14, Sum P(3) = 3.3e-14
Identities = 27/84 (32%), Positives = 49/84 (58%)
Query: 24 EQVDQAKRIISPFMLRRLKKDVLTELPKKTALVIKVPMIPSQAEKYRGLMEDFKKTANPE 83
+Q+++ ++ P MLRRLK DVLT +P K L+++V + Q + Y+ ++ N +
Sbjct: 831 DQIEKLHNLLGPHMLRRLKADVLTGMPSKQELIVRVELSAMQKKYYKNILTRNFDALNVK 890
Query: 84 GSNRSNEISHMSMFMMLRKMANHP 107
N ++S +++ M L+K NHP
Sbjct: 891 --NGGTQMSLINIIMELKKCCNHP 912
Score = 129 (50.5 bits), Expect = 3.3e-14, Sum P(3) = 3.3e-14
Identities = 25/55 (45%), Positives = 37/55 (67%)
Query: 173 LVVESGKLKKLDEILPDLKKNGHRVLIFSQFIFVLDILGHYMDIRGWRHLRLDGA 227
L+ +GK L ++L LK GHRVLIFSQ +LDIL + D+ G+++ R+DG+
Sbjct: 935 LIKNAGKFVLLQKMLRKLKDGGHRVLIFSQMTMMLDILEDFCDVEGYKYERIDGS 989
Score = 37 (18.1 bits), Expect = 5.9e-05, Sum P(3) = 5.9e-05
Identities = 8/18 (44%), Positives = 13/18 (72%)
Query: 180 LKKLDEILPDLKKNGHRV 197
L +LD++L DLK + R+
Sbjct: 1645 LAQLDDLLSDLKTDVARL 1662
Score = 36 (17.7 bits), Expect = 3.3e-14, Sum P(3) = 3.3e-14
Identities = 11/31 (35%), Positives = 16/31 (51%)
Query: 2 DSDSEDDARYEDKRKEQATFEVEQVDQAKRI 32
DSD E +A + K+Q E E+ + RI
Sbjct: 202 DSDQEFEALIKQHEKQQD--EAEKGKEEARI 230
Score = 36 (17.7 bits), Expect = 0.00033, Sum P(3) = 0.00033
Identities = 8/22 (36%), Positives = 13/22 (59%)
Query: 158 KHKTLDCAK-YKVPDDLVVESG 178
K + +D K Y+V D + E+G
Sbjct: 592 KREKIDILKKYEVQPDFISETG 613
>UNIPROTKB|B5DE69 [details] [associations]
symbol:chd8 "Chromodomain-helicase-DNA-binding protein 8"
species:8364 "Xenopus (Silurana) tropicalis" [GO:0005634 "nucleus"
evidence=ISS] [GO:0071339 "MLL1 complex" evidence=ISS]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001650
InterPro:IPR006576 Pfam:PF00176 Pfam:PF00271 Pfam:PF07533
PROSITE:PS00690 PROSITE:PS50013 PROSITE:PS51194 SMART:SM00298
SMART:SM00490 SMART:SM00592 Pfam:PF00385 GO:GO:0005524
GO:GO:0006355 GO:GO:0016055 GO:GO:0003677 GO:GO:0006351
GO:GO:0016568 GO:GO:0004386 InterPro:IPR016197 SUPFAM:SSF54160
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0071339
InterPro:IPR023780 PROSITE:PS00598 HOVERGEN:HBG107676 CTD:57680
KO:K04494 EMBL:BC168549 RefSeq:NP_001131089.2 UniGene:Str.42730
GeneID:100192376 KEGG:xtr:100192376 Xenbase:XB-GENE-966847
Uniprot:B5DE69
Length = 2184
Score = 134 (52.2 bits), Expect = 3.7e-14, Sum P(2) = 3.7e-14
Identities = 32/85 (37%), Positives = 50/85 (58%)
Query: 24 EQVDQAKRIISPFMLRRLKKDVLTELPKKTALVIKVPMIPSQAEKYRGLME-DFKKTANP 82
EQV + + I+ P MLRRLK+DV L K +I+V + Q + YR ++E +F
Sbjct: 960 EQVQKLQAILKPMMLRRLKEDVEKNLAPKQETIIEVELTNIQKKYYRAILEKNFSFLT-- 1017
Query: 83 EGSNRSNEISHMSMFMMLRKMANHP 107
+G+++SN + ++ M LRK NHP
Sbjct: 1018 KGASQSNTPNLLNTMMELRKCCNHP 1042
Score = 127 (49.8 bits), Expect = 3.7e-14, Sum P(2) = 3.7e-14
Identities = 27/61 (44%), Positives = 40/61 (65%)
Query: 173 LVVESGKLKKLDEILPDLKKNGHRVLIFSQFIFVLDILGHYMDIRGWRHLRLDGATQVSS 232
+V SGKL +D++LP L+ GH+VLIFSQ + LDIL Y+ R + + R+DG + +
Sbjct: 1072 MVRSSGKLVLIDKLLPKLRAGGHKVLIFSQMVRCLDILEDYLIQRRYLYERIDGRVRGNM 1131
Query: 233 R 233
R
Sbjct: 1132 R 1132
Score = 38 (18.4 bits), Expect = 5.5e-05, Sum P(2) = 5.5e-05
Identities = 19/67 (28%), Positives = 32/67 (47%)
Query: 148 SDYDIHQLSLKHKTLDCAKYKVPDDLVVESGKLKKLDEILPDLKKNGHRVLIFSQFIFVL 207
S +DIH+ HK Y PD L + G KK LK ++VL+ + ++ L
Sbjct: 1486 SSFDIHKADWIHK------YN-PDTLFQDEG-YKK------HLKHQCNKVLLRVRMLYFL 1531
Query: 208 --DILGH 212
+++G+
Sbjct: 1532 RQEVIGN 1538
Score = 38 (18.4 bits), Expect = 0.00039, Sum P(2) = 0.00039
Identities = 9/43 (20%), Positives = 23/43 (53%)
Query: 1 MDSDSEDDARYEDKRKEQATFEVEQVDQAKRIISPFMLRRLKK 43
++ + +D +R + K+K+ T + + ++ K++ LR K
Sbjct: 431 VNPEDDDGSRRKRKKKKGETSDRSKDEKPKKVKGSGSLRSRSK 473
Score = 37 (18.1 bits), Expect = 6.9e-05, Sum P(2) = 6.9e-05
Identities = 8/17 (47%), Positives = 10/17 (58%)
Query: 127 VEDPTYKGTNPQYILED 143
+EDP YK + Q ED
Sbjct: 1634 IEDPEYKPLHAQKDPED 1650
>UNIPROTKB|D4AA07 [details] [associations]
symbol:Smarca4 "Transcription activator BRG1" species:10116
"Rattus norvegicus" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR006576 Pfam:PF00176 Pfam:PF00271 Pfam:PF07533
PROSITE:PS51194 SMART:SM00490 SMART:SM00592 RGD:621728
GO:GO:0005524 GO:GO:0003677 GO:GO:0004386 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 InterPro:IPR013999 InterPro:IPR014012
InterPro:IPR006562 Pfam:PF07529 SMART:SM00573 PROSITE:PS51204
OrthoDB:EOG418BMJ IPI:IPI00915110 Ensembl:ENSRNOT00000060926
ArrayExpress:D4AA07 Uniprot:D4AA07
Length = 1262
Score = 136 (52.9 bits), Expect = 4.1e-14, Sum P(2) = 4.1e-14
Identities = 27/62 (43%), Positives = 38/62 (61%)
Query: 172 DLVVESGKLKKLDEILPDLKKNGHRVLIFSQFIFVLDILGHYMDIRGWRHLRLDGATQVS 231
DL SGK + LD ILP L+ H+VL+F Q ++ I+ Y RG+++LRLDG T+
Sbjct: 873 DLYRASGKFELLDRILPKLRATNHKVLLFCQMTSLMTIMEDYFAYRGFKYLRLDGTTKAE 932
Query: 232 SR 233
R
Sbjct: 933 DR 934
Score = 119 (46.9 bits), Expect = 4.1e-14, Sum P(2) = 4.1e-14
Identities = 33/90 (36%), Positives = 47/90 (52%)
Query: 31 RIISPFMLRRLKKDVLTELPKKTALVIKVPMIPSQAEKYRGLMEDFKKTANPEGSNRSNE 90
+++ PF+LRRLKK+V +LP+K VIK M Q YR + K +GS + +
Sbjct: 769 KVLRPFLLRRLKKEVEAQLPEKVEYVIKCDMSALQRVLYRHMQA--KGVLLTDGSEKDKK 826
Query: 91 -----ISHMSMFMMLRKMANHPLGLRYYFQ 115
+ M+ M LRK+ NHP Y FQ
Sbjct: 827 GKGGTKTLMNTIMQLRKICNHP----YMFQ 852
Score = 43 (20.2 bits), Expect = 0.00034, Sum P(2) = 0.00034
Identities = 10/24 (41%), Positives = 16/24 (66%)
Query: 156 SLKHKTLDCAKYKVP-DDLVVESG 178
S++ K L AKYK+ D V+++G
Sbjct: 1008 SVEEKILAAAKYKLNVDQKVIQAG 1031
>UNIPROTKB|E1BS47 [details] [associations]
symbol:CHD7 "Chromodomain-helicase-DNA-binding protein 7"
species:9031 "Gallus gallus" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0003682 "chromatin binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001005
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 PROSITE:PS50013
PROSITE:PS51194 SMART:SM00298 SMART:SM00490 SMART:SM00717
Pfam:PF00385 GO:GO:0005524 GO:GO:0005634 GO:GO:0003677
GO:GO:0003682 GO:GO:0004386 InterPro:IPR016197 SUPFAM:SSF54160
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 InterPro:IPR023780
GeneTree:ENSGT00560000077077 EMBL:AADN02022009 EMBL:AADN02022010
IPI:IPI00598234 Ensembl:ENSGALT00000005903 ArrayExpress:E1BS47
Uniprot:E1BS47
Length = 1326
Score = 129 (50.5 bits), Expect = 4.2e-14, Sum P(2) = 4.2e-14
Identities = 39/120 (32%), Positives = 61/120 (50%)
Query: 24 EQVDQAKRIISPFMLRRLKKDVLTELPKKTALVIKVPMIPSQAEKYRGLMEDFKKTAN-P 82
EQV + + I+ P MLRRLK+DV L K +I+V + Q + YR ++E K A
Sbjct: 359 EQVQKLQAILKPMMLRRLKEDVEKNLAPKEETIIEVELTNIQKKYYRAILE--KNFAFLS 416
Query: 83 EGSNRSNEISHMSMFMMLRKMANHPLGLRYYFQENTLREIADCLVEDPTYKGTNPQYILE 142
+G ++N + ++ M LRK NHP L +E L E + T+ +P + L+
Sbjct: 417 KGGGQANVPNLLNTMMELRKCCNHPY-LINGAEEKILEEFKE------THNADSPDFQLQ 469
Score = 128 (50.1 bits), Expect = 4.2e-14, Sum P(2) = 4.2e-14
Identities = 27/61 (44%), Positives = 40/61 (65%)
Query: 173 LVVESGKLKKLDEILPDLKKNGHRVLIFSQFIFVLDILGHYMDIRGWRHLRLDGATQVSS 232
++ +GKL +D++LP LK GHRVLIFSQ + LDIL Y+ R + + R+DG + +
Sbjct: 471 MIQAAGKLVLIDKLLPKLKAGGHRVLIFSQMVRCLDILEDYLIQRRYPYERIDGRVRGNL 530
Query: 233 R 233
R
Sbjct: 531 R 531
Score = 39 (18.8 bits), Expect = 6.2e-05, Sum P(2) = 6.2e-05
Identities = 13/51 (25%), Positives = 26/51 (50%)
Query: 143 DISWLSDYDIHQLSLKHKTLDCAKYKVPDDLVVESGKLKKLDEILPDLKKN 193
DIS L D + Q K LD ++LV+++ +++K + +K++
Sbjct: 711 DIS-LDDPNFWQKWAKKAELDIDALNGRNNLVIDTPRVRKQTRLYSAVKED 760
Score = 39 (18.8 bits), Expect = 8.1e-05, Sum P(2) = 8.1e-05
Identities = 8/18 (44%), Positives = 11/18 (61%)
Query: 132 YKGTNP--QYILEDISWL 147
YK N +Y LE ++WL
Sbjct: 148 YKNNNKLREYQLEGVNWL 165
>RGD|1311921 [details] [associations]
symbol:Chd7 "chromodomain helicase DNA binding protein 7"
species:10116 "Rattus norvegicus" [GO:0001501 "skeletal system
development" evidence=IEA;ISO] [GO:0001568 "blood vessel
development" evidence=ISO] [GO:0001701 "in utero embryonic
development" evidence=IEA;ISO] [GO:0003007 "heart morphogenesis"
evidence=IEA;ISO] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0003682 "chromatin binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA;ISO] [GO:0007417 "central
nervous system development" evidence=IEA;ISO] [GO:0007512 "adult
heart development" evidence=IEA;ISO] [GO:0007605 "sensory
perception of sound" evidence=IEA;ISO] [GO:0007626 "locomotory
behavior" evidence=ISO] [GO:0007628 "adult walking behavior"
evidence=IEA;ISO] [GO:0008015 "blood circulation" evidence=IEA;ISO]
[GO:0021545 "cranial nerve development" evidence=IEA;ISO]
[GO:0030217 "T cell differentiation" evidence=IEA;ISO] [GO:0030540
"female genitalia development" evidence=IEA;ISO] [GO:0035116
"embryonic hindlimb morphogenesis" evidence=IEA;ISO] [GO:0040018
"positive regulation of multicellular organism growth"
evidence=IEA;ISO] [GO:0042471 "ear morphogenesis" evidence=ISO]
[GO:0042472 "inner ear morphogenesis" evidence=ISO] [GO:0043010
"camera-type eye development" evidence=ISO] [GO:0043584 "nose
development" evidence=IEA;ISO] [GO:0048752 "semicircular canal
morphogenesis" evidence=IEA;ISO] [GO:0048806 "genitalia
development" evidence=ISO] [GO:0048844 "artery morphogenesis"
evidence=IEA;ISO] [GO:0050890 "cognition" evidence=IEA;ISO]
[GO:0060021 "palate development" evidence=IEA;ISO] [GO:0060041
"retina development in camera-type eye" evidence=IEA;ISO]
[GO:0060123 "regulation of growth hormone secretion"
evidence=IEA;ISO] [GO:0060173 "limb development" evidence=ISO]
[GO:0060324 "face development" evidence=IEA;ISO] InterPro:IPR000330
InterPro:IPR000953 InterPro:IPR001005 InterPro:IPR001650
InterPro:IPR006576 Pfam:PF00176 Pfam:PF00271 Pfam:PF07533
PROSITE:PS50013 PROSITE:PS51194 SMART:SM00298 SMART:SM00490
SMART:SM00592 SMART:SM00717 Pfam:PF00385 RGD:1311921 GO:GO:0005524
GO:GO:0005634 GO:GO:0003677 GO:GO:0008015 GO:GO:0003007
GO:GO:0050890 GO:GO:0001701 GO:GO:0040018 GO:GO:0007417
GO:GO:0003682 GO:GO:0001501 GO:GO:0060041 GO:GO:0007605
GO:GO:0007512 GO:GO:0004386 GO:GO:0035116 GO:GO:0060324
GO:GO:0060021 GO:GO:0048844 InterPro:IPR016197 SUPFAM:SSF54160
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0030540
GO:GO:0007628 GO:GO:0030217 GO:GO:0048752 InterPro:IPR023780
CTD:55636 KO:K14437 OrthoDB:EOG4MCWZD GO:GO:0021545 GO:GO:0043584
GO:GO:0060123 GeneTree:ENSGT00560000077077 IPI:IPI00366595
RefSeq:XP_003749947.1 PRIDE:D3ZAP7 Ensembl:ENSRNOT00000008901
GeneID:312974 KEGG:rno:312974 UCSC:RGD:1311921 Uniprot:D3ZAP7
Length = 2985
Score = 135 (52.6 bits), Expect = 4.2e-14, Sum P(2) = 4.2e-14
Identities = 36/101 (35%), Positives = 53/101 (52%)
Query: 24 EQVDQAKRIISPFMLRRLKKDVLTELPKKTALVIKVPMIPSQAEKYRGLMEDFKKTANPE 83
EQV + + I+ P MLRRLK+DV L K +I+V + Q + YR ++E T +
Sbjct: 1162 EQVQKLQAILKPMMLRRLKEDVEKNLAPKEETIIEVELTNIQKKYYRAILEK-NFTFLSK 1220
Query: 84 GSNRSNEISHMSMFMMLRKMANHPLGLRYYFQENTLREIAD 124
G ++N + ++ M LRK NHP L +E L E D
Sbjct: 1221 GGGQANVPNLLNTMMELRKCCNHPY-LINGAEEKILEEFKD 1260
Score = 128 (50.1 bits), Expect = 4.2e-14, Sum P(2) = 4.2e-14
Identities = 27/61 (44%), Positives = 40/61 (65%)
Query: 173 LVVESGKLKKLDEILPDLKKNGHRVLIFSQFIFVLDILGHYMDIRGWRHLRLDGATQVSS 232
++ +GKL +D++LP LK GHRVLIFSQ + LDIL Y+ R + + R+DG + +
Sbjct: 1274 MIQAAGKLVLIDKLLPKLKAGGHRVLIFSQMVRCLDILEDYLIQRRYPYERIDGRVRGNL 1333
Query: 233 R 233
R
Sbjct: 1334 R 1334
Score = 39 (18.8 bits), Expect = 6.3e-05, Sum P(2) = 6.3e-05
Identities = 13/51 (25%), Positives = 26/51 (50%)
Query: 143 DISWLSDYDIHQLSLKHKTLDCAKYKVPDDLVVESGKLKKLDEILPDLKKN 193
DIS L D + Q K LD ++LV+++ +++K + +K++
Sbjct: 1511 DIS-LDDPNFWQKWAKKAELDIDALNGRNNLVIDTPRVRKQTRLYSAVKED 1560
Score = 39 (18.8 bits), Expect = 0.00045, Sum P(2) = 0.00045
Identities = 8/18 (44%), Positives = 11/18 (61%)
Query: 132 YKGTNP--QYILEDISWL 147
YK N +Y LE ++WL
Sbjct: 951 YKNNNKLREYQLEGVNWL 968
>UNIPROTKB|H3BTW3 [details] [associations]
symbol:CHD9 "Chromodomain-helicase-DNA-binding protein 9"
species:9606 "Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001650
InterPro:IPR017956 Pfam:PF00176 Pfam:PF00271 PROSITE:PS50013
PROSITE:PS51194 SMART:SM00298 SMART:SM00384 SMART:SM00490
Pfam:PF00385 GO:GO:0005524 GO:GO:0005634 GO:GO:0003677
GO:GO:0004386 InterPro:IPR016197 SUPFAM:SSF54160 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 InterPro:IPR023780 EMBL:AC007906
EMBL:AC079416 HGNC:HGNC:25701 Ensembl:ENST00000565803 Bgee:H3BTW3
Uniprot:H3BTW3
Length = 1099
Score = 133 (51.9 bits), Expect = 4.4e-14, Sum P(2) = 4.4e-14
Identities = 35/102 (34%), Positives = 58/102 (56%)
Query: 24 EQVDQAKRIISPFMLRRLKKDVLTELPKKTALVIKVPMIPSQAEKYRGLME-DFKKTANP 82
EQV + + I+ P MLRRLK+DV +L K +I+V + Q + YR ++E +F +
Sbjct: 591 EQVQKLQAILKPMMLRRLKEDVEKKLAPKEETIIEVELTNIQKKYYRAILEKNFSFLS-- 648
Query: 83 EGSNRSNEISHMSMFMMLRKMANHPLGLRYYFQENTLREIAD 124
+G+ ++N + ++ M LRK NHP ++ +E L E D
Sbjct: 649 KGAGQTNVPNLVNTMMELRKCCNHPYLIKGA-EEKILGEFRD 689
Score = 121 (47.7 bits), Expect = 4.4e-14, Sum P(2) = 4.4e-14
Identities = 24/61 (39%), Positives = 40/61 (65%)
Query: 173 LVVESGKLKKLDEILPDLKKNGHRVLIFSQFIFVLDILGHYMDIRGWRHLRLDGATQVSS 232
++ +GKL +D++LP +K GH+VLIFSQ + LDIL Y+ + + + R+DG + +
Sbjct: 703 MIQSAGKLVLIDKLLPKMKAGGHKVLIFSQMVRCLDILEDYLIHKRYLYERIDGRVRGNL 762
Query: 233 R 233
R
Sbjct: 763 R 763
>ZFIN|ZDB-GENE-030131-6320 [details] [associations]
symbol:chd8 "chromodomain helicase DNA binding
protein 8" species:7955 "Danio rerio" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0016817 "hydrolase activity, acting on acid anhydrides"
evidence=IEA] [GO:0003682 "chromatin binding" evidence=IEA]
[GO:0071339 "MLL1 complex" evidence=ISS] [GO:0016055 "Wnt receptor
signaling pathway" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0016568 "chromatin modification"
evidence=IEA] [GO:0016787 "hydrolase activity" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001005
InterPro:IPR001650 InterPro:IPR006576 Pfam:PF00176 Pfam:PF00271
Pfam:PF07533 PROSITE:PS00690 PROSITE:PS50013 PROSITE:PS51194
SMART:SM00298 SMART:SM00490 SMART:SM00717 Pfam:PF00385
ZFIN:ZDB-GENE-030131-6320 GO:GO:0005524 GO:GO:0006355 GO:GO:0016055
GO:GO:0003677 GO:GO:0006351 GO:GO:0003682 GO:GO:0016568
GO:GO:0004386 InterPro:IPR016197 SUPFAM:SSF54160 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0071339
InterPro:IPR023780 PROSITE:PS00598 EMBL:AL928674 IPI:IPI00919855
UniGene:Dr.81397 PRIDE:B0R0I6 HOVERGEN:HBG107676 OrthoDB:EOG4ZPDTC
Uniprot:B0R0I6
Length = 2511
Score = 135 (52.6 bits), Expect = 4.8e-14, Sum P(2) = 4.8e-14
Identities = 36/108 (33%), Positives = 56/108 (51%)
Query: 24 EQVDQAKRIISPFMLRRLKKDVLTELPKKTALVIKVPMIPSQAEKYRGLMEDFKKTANPE 83
EQV + + I+ P MLRRLK+DV L K +I+V + Q + YR ++E +
Sbjct: 1052 EQVQKLQSILKPMMLRRLKEDVEKNLAPKQETIIEVELTDVQKKYYRAILERNFSFLSMG 1111
Query: 84 GSNRSNEISHMSMFMMLRKMANHPLGLRYYFQE--NTLREIADCLVED 129
+ SN + ++ M LRK NHP + ++ + LRE+ D L D
Sbjct: 1112 ATQNSNVPNLLNTMMELRKCCNHPYLITGAEEKIVSELREVYDPLAPD 1159
Score = 126 (49.4 bits), Expect = 4.8e-14, Sum P(2) = 4.8e-14
Identities = 28/61 (45%), Positives = 40/61 (65%)
Query: 173 LVVESGKLKKLDEILPDLKKNGHRVLIFSQFIFVLDILGHYMDIRGWRHLRLDGATQVSS 232
LV +GKL LD++LP LK GH+VLIFSQ + LDIL Y+ + + + R+DG + +
Sbjct: 1165 LVRSAGKLVLLDKLLPRLKAGGHKVLIFSQMVRCLDILEDYLIHKRYLYERIDGRVRGNL 1224
Query: 233 R 233
R
Sbjct: 1225 R 1225
Score = 41 (19.5 bits), Expect = 0.00035, Sum P(2) = 0.00035
Identities = 10/24 (41%), Positives = 13/24 (54%)
Query: 126 LVEDPTYKGTNP--QYILEDISWL 147
L E YK N +Y LE ++WL
Sbjct: 835 LDESTEYKNGNQLREYQLEGVNWL 858
>WB|WBGene00002637 [details] [associations]
symbol:let-418 species:6239 "Caenorhabditis elegans"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0016818 "hydrolase activity,
acting on acid anhydrides, in phosphorus-containing anhydrides"
evidence=IEA] [GO:0009792 "embryo development ending in birth or
egg hatching" evidence=IMP] [GO:0040007 "growth" evidence=IMP]
[GO:0002119 "nematode larval development" evidence=IMP] [GO:0000003
"reproduction" evidence=IMP] [GO:0040035 "hermaphrodite genitalia
development" evidence=IMP] [GO:0048557 "embryonic digestive tract
morphogenesis" evidence=IGI] [GO:0000977 "RNA polymerase II
regulatory region sequence-specific DNA binding" evidence=IDA]
[GO:0000122 "negative regulation of transcription from RNA
polymerase II promoter" evidence=IMP] [GO:0008134 "transcription
factor binding" evidence=IPI] [GO:0016581 "NuRD complex"
evidence=ISS] [GO:0040027 "negative regulation of vulval
development" evidence=IMP] InterPro:IPR001841 InterPro:IPR000330
InterPro:IPR000953 InterPro:IPR001650 InterPro:IPR001965
InterPro:IPR002464 InterPro:IPR012957 InterPro:IPR012958
InterPro:IPR019787 Pfam:PF00176 Pfam:PF00271 Pfam:PF00628
Pfam:PF08073 Pfam:PF08074 PROSITE:PS00690 PROSITE:PS50013
PROSITE:PS50016 PROSITE:PS51194 SMART:SM00184 SMART:SM00249
SMART:SM00298 SMART:SM00490 Pfam:PF00385 GO:GO:0005524
GO:GO:0009792 GO:GO:0040007 GO:GO:0002119 GO:GO:0046872
GO:GO:0003677 GO:GO:0008270 GO:GO:0000122 GO:GO:0040035
Gene3D:3.30.40.10 InterPro:IPR011011 InterPro:IPR013083
SUPFAM:SSF57903 InterPro:IPR019786 PROSITE:PS01359 GO:GO:0040027
InterPro:IPR016197 SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 GO:GO:0016581 InterPro:IPR023780
PROSITE:PS00598 GeneTree:ENSGT00560000076896 InterPro:IPR009462
InterPro:IPR009463 Pfam:PF06461 Pfam:PF06465 KO:K11643
GO:GO:0048557 HSSP:Q14839 EMBL:AF308445 EMBL:FO080294 PIR:T34239
RefSeq:NP_504523.1 UniGene:Cel.16862 ProteinModelPortal:G5EBZ4
SMR:G5EBZ4 IntAct:G5EBZ4 STRING:Q19815 EnsemblMetazoa:F26F12.7
GeneID:178970 KEGG:cel:CELE_F26F12.7 CTD:178970 WormBase:F26F12.7
OMA:VTQDATE NextBio:903342 Uniprot:G5EBZ4
Length = 1829
Score = 139 (54.0 bits), Expect = 4.8e-14, Sum P(2) = 4.8e-14
Identities = 28/84 (33%), Positives = 50/84 (59%)
Query: 24 EQVDQAKRIISPFMLRRLKKDVLTELPKKTALVIKVPMIPSQAEKYRGLMEDFKKTANPE 83
+Q+++ ++ P MLRRLK DVLT +P K+ L+++V + Q + Y+ ++ N +
Sbjct: 817 DQIEKLHNLLGPHMLRRLKADVLTGMPSKSELIVRVELSAMQKKWYKNILTRNFDALNVK 876
Query: 84 GSNRSNEISHMSMFMMLRKMANHP 107
N ++S M++ M L+K NHP
Sbjct: 877 --NGGTQMSLMNVLMELKKCCNHP 898
Score = 118 (46.6 bits), Expect = 4.8e-14, Sum P(2) = 4.8e-14
Identities = 25/55 (45%), Positives = 35/55 (63%)
Query: 173 LVVESGKLKKLDEILPDLKKNGHRVLIFSQFIFVLDILGHYMDIRGWRHLRLDGA 227
L+ SGK L ++L LK GHRVLIFSQ +LDI+ + G+R+ R+DG+
Sbjct: 921 LIKNSGKFVLLQKMLRKLKDGGHRVLIFSQMTRMLDIMEDLCEYEGYRYERIDGS 975
Score = 43 (20.2 bits), Expect = 2.7e-06, Sum P(2) = 2.7e-06
Identities = 13/32 (40%), Positives = 19/32 (59%)
Query: 180 LKKLDEILPDLKKNGHRV-LIFSQFIFVLDIL 210
L +LDEIL D+K + R+ F+Q V + L
Sbjct: 1656 LVQLDEILSDMKADVSRLPSTFTQLATVTERL 1687
>UNIPROTKB|G5EBZ4 [details] [associations]
symbol:let-418 "Protein let-418" species:6239
"Caenorhabditis elegans" [GO:0005515 "protein binding"
evidence=IPI] InterPro:IPR001841 InterPro:IPR000330
InterPro:IPR000953 InterPro:IPR001650 InterPro:IPR001965
InterPro:IPR002464 InterPro:IPR012957 InterPro:IPR012958
InterPro:IPR019787 Pfam:PF00176 Pfam:PF00271 Pfam:PF00628
Pfam:PF08073 Pfam:PF08074 PROSITE:PS00690 PROSITE:PS50013
PROSITE:PS50016 PROSITE:PS51194 SMART:SM00184 SMART:SM00249
SMART:SM00298 SMART:SM00490 Pfam:PF00385 GO:GO:0005524
GO:GO:0009792 GO:GO:0040007 GO:GO:0002119 GO:GO:0046872
GO:GO:0003677 GO:GO:0008270 GO:GO:0000122 GO:GO:0040035
Gene3D:3.30.40.10 InterPro:IPR011011 InterPro:IPR013083
SUPFAM:SSF57903 InterPro:IPR019786 PROSITE:PS01359 GO:GO:0040027
InterPro:IPR016197 SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 GO:GO:0016581 InterPro:IPR023780
PROSITE:PS00598 GeneTree:ENSGT00560000076896 InterPro:IPR009462
InterPro:IPR009463 Pfam:PF06461 Pfam:PF06465 KO:K11643
GO:GO:0048557 HSSP:Q14839 EMBL:AF308445 EMBL:FO080294 PIR:T34239
RefSeq:NP_504523.1 UniGene:Cel.16862 ProteinModelPortal:G5EBZ4
SMR:G5EBZ4 IntAct:G5EBZ4 STRING:Q19815 EnsemblMetazoa:F26F12.7
GeneID:178970 KEGG:cel:CELE_F26F12.7 CTD:178970 WormBase:F26F12.7
OMA:VTQDATE NextBio:903342 Uniprot:G5EBZ4
Length = 1829
Score = 139 (54.0 bits), Expect = 4.8e-14, Sum P(2) = 4.8e-14
Identities = 28/84 (33%), Positives = 50/84 (59%)
Query: 24 EQVDQAKRIISPFMLRRLKKDVLTELPKKTALVIKVPMIPSQAEKYRGLMEDFKKTANPE 83
+Q+++ ++ P MLRRLK DVLT +P K+ L+++V + Q + Y+ ++ N +
Sbjct: 817 DQIEKLHNLLGPHMLRRLKADVLTGMPSKSELIVRVELSAMQKKWYKNILTRNFDALNVK 876
Query: 84 GSNRSNEISHMSMFMMLRKMANHP 107
N ++S M++ M L+K NHP
Sbjct: 877 --NGGTQMSLMNVLMELKKCCNHP 898
Score = 118 (46.6 bits), Expect = 4.8e-14, Sum P(2) = 4.8e-14
Identities = 25/55 (45%), Positives = 35/55 (63%)
Query: 173 LVVESGKLKKLDEILPDLKKNGHRVLIFSQFIFVLDILGHYMDIRGWRHLRLDGA 227
L+ SGK L ++L LK GHRVLIFSQ +LDI+ + G+R+ R+DG+
Sbjct: 921 LIKNSGKFVLLQKMLRKLKDGGHRVLIFSQMTRMLDIMEDLCEYEGYRYERIDGS 975
Score = 43 (20.2 bits), Expect = 2.7e-06, Sum P(2) = 2.7e-06
Identities = 13/32 (40%), Positives = 19/32 (59%)
Query: 180 LKKLDEILPDLKKNGHRV-LIFSQFIFVLDIL 210
L +LDEIL D+K + R+ F+Q V + L
Sbjct: 1656 LVQLDEILSDMKADVSRLPSTFTQLATVTERL 1687
>UNIPROTKB|F6TQG2 [details] [associations]
symbol:SMARCA1 "Probable global transcription activator
SNF2L1" species:9606 "Homo sapiens" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0031491 "nucleosome
binding" evidence=IEA] [GO:0043044 "ATP-dependent chromatin
remodeling" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001005 InterPro:IPR001650
InterPro:IPR009057 InterPro:IPR015194 InterPro:IPR015195
InterPro:IPR020838 Pfam:PF00176 Pfam:PF00271 Pfam:PF09110
Pfam:PF09111 Pfam:PF13892 PROSITE:PS51194 SMART:SM00490
SMART:SM00717 GO:GO:0005524 GO:GO:0003677 Gene3D:1.10.10.60
SUPFAM:SSF46689 InterPro:IPR017884 PROSITE:PS51293 GO:GO:0004386
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0016585
GO:GO:0031491 GO:GO:0043044 ChiTaRS:SMARCA1 SUPFAM:SSF101224
EMBL:AL138745 EMBL:AL022577 HGNC:HGNC:11097 IPI:IPI00647510
ProteinModelPortal:F6TQG2 SMR:F6TQG2 PRIDE:F6TQG2
Ensembl:ENST00000450039 ArrayExpress:F6TQG2 Bgee:F6TQG2
Uniprot:F6TQG2
Length = 1005
Score = 137 (53.3 bits), Expect = 5.0e-14, Sum P(3) = 5.0e-14
Identities = 31/67 (46%), Positives = 40/67 (59%)
Query: 167 YKVPDDLVVESGKLKKLDEILPDLKKNGHRVLIFSQFIFVLDILGHYMDIRGWRHLRLDG 226
Y + +V SGK+ LD++L LK+ G RVLIFSQ +LDIL Y RG+ + RLDG
Sbjct: 454 YTTDEHIVSNSGKMVVLDKLLAKLKEQGSRVLIFSQMTRLLDILEDYCMWRGYEYCRLDG 513
Query: 227 ATQVSSR 233
T R
Sbjct: 514 QTPHEER 520
Score = 112 (44.5 bits), Expect = 5.0e-14, Sum P(3) = 5.0e-14
Identities = 28/83 (33%), Positives = 46/83 (55%)
Query: 26 VDQAKRIISPFMLRRLKKDVLTELPKKTALVIKVPMIPSQAEKY-RGLMEDFKKTANPEG 84
V++ ++ PF+LRR+K DV LP K + I + + Q E Y + LM+D N G
Sbjct: 363 VERLHAVLKPFLLRRIKTDVEKSLPPKKEIKIYLGLSKMQREWYTKILMKDID-VLNSSG 421
Query: 85 SNRSNEISHMSMFMMLRKMANHP 107
+ +++ +++ M LRK NHP
Sbjct: 422 --KMDKMRLLNILMQLRKCCNHP 442
Score = 39 (18.8 bits), Expect = 5.0e-14, Sum P(3) = 5.0e-14
Identities = 13/37 (35%), Positives = 20/37 (54%)
Query: 3 SDSEDDARYEDKRK-EQAT-FE--VEQVDQAKRIISP 35
S+ E D YE+K K ++A FE ++Q + I P
Sbjct: 54 SEKEMDPEYEEKMKADRAKRFEFLLKQTELFAHFIQP 90
>UNIPROTKB|P28370 [details] [associations]
symbol:SMARCA1 "Probable global transcription activator
SNF2L1" species:9606 "Homo sapiens" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0031491 "nucleosome binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0016589 "NURF complex" evidence=IDA]
[GO:0036310 "annealing helicase activity" evidence=IDA] [GO:0043044
"ATP-dependent chromatin remodeling" evidence=IDA] [GO:0070615
"nucleosome-dependent ATPase activity" evidence=IDA] [GO:0090537
"CERF complex" evidence=IDA] [GO:0030182 "neuron differentiation"
evidence=ISS] [GO:0006338 "chromatin remodeling" evidence=IDA]
[GO:0005515 "protein binding" evidence=IPI] [GO:0005634 "nucleus"
evidence=IDA] [GO:0008094 "DNA-dependent ATPase activity"
evidence=IDA] [GO:0007420 "brain development" evidence=IMP]
[GO:0045893 "positive regulation of transcription, DNA-dependent"
evidence=IMP] [GO:0006351 "transcription, DNA-dependent"
evidence=IMP] [GO:0000733 "DNA strand renaturation" evidence=IDA]
InterPro:IPR000330 InterPro:IPR001005 InterPro:IPR001650
InterPro:IPR009057 InterPro:IPR015194 InterPro:IPR015195
InterPro:IPR020838 Pfam:PF00176 Pfam:PF00271 Pfam:PF09110
Pfam:PF09111 Pfam:PF13892 PROSITE:PS00690 PROSITE:PS51194
SMART:SM00490 SMART:SM00717 GO:GO:0005524 GO:GO:0045893
GO:GO:0007420 GO:GO:0030182 GO:GO:0003677 GO:GO:0006351
Gene3D:1.10.10.60 SUPFAM:SSF46689 InterPro:IPR017884
PROSITE:PS51293 GO:GO:0004386 eggNOG:COG0553 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0031491 GO:GO:0043044
GO:GO:0016589 GO:GO:0036310 ChiTaRS:SMARCA1 SUPFAM:SSF101224
EMBL:AL138745 EMBL:M88163 EMBL:M89907 EMBL:AL022577 EMBL:BC117447
IPI:IPI00216046 IPI:IPI00646130 PIR:S35457 PIR:S35458
RefSeq:NP_003060.2 RefSeq:NP_620604.2 UniGene:Hs.152292
ProteinModelPortal:P28370 SMR:P28370 IntAct:P28370
MINT:MINT-2802155 STRING:P28370 PhosphoSite:P28370 DMDM:115311627
PaxDb:P28370 PRIDE:P28370 Ensembl:ENST00000371121
Ensembl:ENST00000371122 Ensembl:ENST00000371123 GeneID:6594
KEGG:hsa:6594 UCSC:uc004eun.4 UCSC:uc004eup.4 CTD:6594
GeneCards:GC0XM128580 HGNC:HGNC:11097 HPA:HPA003335 MIM:300012
neXtProt:NX_P28370 PharmGKB:PA35947 HOVERGEN:HBG056329
InParanoid:P28370 KO:K11727 OMA:PMSQKRK PhylomeDB:P28370
GenomeRNAi:6594 NextBio:25645 ArrayExpress:P28370 Bgee:P28370
CleanEx:HS_SMARCA1 Genevestigator:P28370 GermOnline:ENSG00000102038
Uniprot:P28370
Length = 1054
Score = 137 (53.3 bits), Expect = 5.9e-14, Sum P(3) = 5.9e-14
Identities = 31/67 (46%), Positives = 40/67 (59%)
Query: 167 YKVPDDLVVESGKLKKLDEILPDLKKNGHRVLIFSQFIFVLDILGHYMDIRGWRHLRLDG 226
Y + +V SGK+ LD++L LK+ G RVLIFSQ +LDIL Y RG+ + RLDG
Sbjct: 475 YTTDEHIVSNSGKMVVLDKLLAKLKEQGSRVLIFSQMTRLLDILEDYCMWRGYEYCRLDG 534
Query: 227 ATQVSSR 233
T R
Sbjct: 535 QTPHEER 541
Score = 112 (44.5 bits), Expect = 5.9e-14, Sum P(3) = 5.9e-14
Identities = 28/83 (33%), Positives = 46/83 (55%)
Query: 26 VDQAKRIISPFMLRRLKKDVLTELPKKTALVIKVPMIPSQAEKY-RGLMEDFKKTANPEG 84
V++ ++ PF+LRR+K DV LP K + I + + Q E Y + LM+D N G
Sbjct: 384 VERLHAVLKPFLLRRIKTDVEKSLPPKKEIKIYLGLSKMQREWYTKILMKDID-VLNSSG 442
Query: 85 SNRSNEISHMSMFMMLRKMANHP 107
+ +++ +++ M LRK NHP
Sbjct: 443 --KMDKMRLLNILMQLRKCCNHP 463
Score = 39 (18.8 bits), Expect = 5.9e-14, Sum P(3) = 5.9e-14
Identities = 13/37 (35%), Positives = 20/37 (54%)
Query: 3 SDSEDDARYEDKRK-EQAT-FE--VEQVDQAKRIISP 35
S+ E D YE+K K ++A FE ++Q + I P
Sbjct: 75 SEKEMDPEYEEKMKADRAKRFEFLLKQTELFAHFIQP 111
>UNIPROTKB|F1MLB2 [details] [associations]
symbol:CHD8 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0071339 "MLL1 complex" evidence=IEA] [GO:0060070
"canonical Wnt receptor signaling pathway" evidence=IEA]
[GO:0045945 "positive regulation of transcription from RNA
polymerase III promoter" evidence=IEA] [GO:0045944 "positive
regulation of transcription from RNA polymerase II promoter"
evidence=IEA] [GO:0045892 "negative regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0043066 "negative regulation of
apoptotic process" evidence=IEA] [GO:0043044 "ATP-dependent
chromatin remodeling" evidence=IEA] [GO:0035064 "methylated histone
residue binding" evidence=IEA] [GO:0030178 "negative regulation of
Wnt receptor signaling pathway" evidence=IEA] [GO:0008094
"DNA-dependent ATPase activity" evidence=IEA] [GO:0008013
"beta-catenin binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0003678 "DNA helicase activity" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0002039 "p53 binding"
evidence=IEA] [GO:0001701 "in utero embryonic development"
evidence=IEA] InterPro:IPR000330 InterPro:IPR000953
InterPro:IPR001650 InterPro:IPR006576 Pfam:PF00176 Pfam:PF00271
Pfam:PF07533 PROSITE:PS50013 PROSITE:PS51194 SMART:SM00298
SMART:SM00490 SMART:SM00592 Pfam:PF00385 GO:GO:0005524
GO:GO:0045892 GO:GO:0043066 GO:GO:0003677 GO:GO:0001701
GO:GO:0045944 GO:GO:0045945 GO:GO:0030178 GO:GO:0060070
InterPro:IPR016197 SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0003678 GO:GO:0043044 GO:GO:0071339
InterPro:IPR023780 GO:GO:0008094 GeneTree:ENSGT00560000077077
OMA:FLAYMED EMBL:DAAA02028315 EMBL:DAAA02028312 EMBL:DAAA02028313
EMBL:DAAA02028314 IPI:IPI01017729 Ensembl:ENSBTAT00000027215
Uniprot:F1MLB2
Length = 2537
Score = 134 (52.2 bits), Expect = 6.4e-14, Sum P(2) = 6.4e-14
Identities = 34/102 (33%), Positives = 55/102 (53%)
Query: 24 EQVDQAKRIISPFMLRRLKKDVLTELPKKTALVIKVPMIPSQAEKYRGLME-DFKKTANP 82
EQV + + I+ P MLRRLK+DV L K +I+V + Q + YR ++E +F +
Sbjct: 969 EQVQKLQAILKPMMLRRLKEDVEKNLAPKQETIIEVELTNIQKKYYRAILEKNFSFLS-- 1026
Query: 83 EGSNRSNEISHMSMFMMLRKMANHPLGLRYYFQENTLREIAD 124
+G+ +N + ++ M LRK NHP + +E L E +
Sbjct: 1027 KGAGHTNMPNLLNTMMELRKCCNHPYLINAGAEEKILTEFRE 1068
Score = 126 (49.4 bits), Expect = 6.4e-14, Sum P(2) = 6.4e-14
Identities = 27/61 (44%), Positives = 40/61 (65%)
Query: 173 LVVESGKLKKLDEILPDLKKNGHRVLIFSQFIFVLDILGHYMDIRGWRHLRLDGATQVSS 232
+V +GKL +D++LP LK GH+VLIFSQ + LDIL Y+ R + + R+DG + +
Sbjct: 1082 MVRSAGKLVLIDKLLPKLKAGGHKVLIFSQMVRCLDILEDYLIQRRYLYERIDGRVRGNL 1141
Query: 233 R 233
R
Sbjct: 1142 R 1142
Score = 38 (18.4 bits), Expect = 7.5e-05, Sum P(2) = 7.5e-05
Identities = 14/49 (28%), Positives = 23/49 (46%)
Query: 143 DISWLSDYDIHQLSLKHKTLDCAKYKVPDDLVVESGKLKKLDEILPDLK 191
DIS L D + Q K LD ++LV+++ +++K LK
Sbjct: 1319 DIS-LDDPNFWQKWAKKADLDMDLLNSKNNLVIDTPRVRKQTRHFSTLK 1366
Score = 38 (18.4 bits), Expect = 0.00071, Sum P(2) = 0.00071
Identities = 8/18 (44%), Positives = 11/18 (61%)
Query: 132 YKGTNP--QYILEDISWL 147
YK N +Y LE ++WL
Sbjct: 758 YKNRNQLREYQLEGVNWL 775
>WB|WBGene00004204 [details] [associations]
symbol:swsn-4 species:6239 "Caenorhabditis elegans"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0016817
"hydrolase activity, acting on acid anhydrides" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0016818 "hydrolase
activity, acting on acid anhydrides, in phosphorus-containing
anhydrides" evidence=IEA] [GO:0009792 "embryo development ending in
birth or egg hatching" evidence=IMP] [GO:0040010 "positive
regulation of growth rate" evidence=IMP] [GO:0000003 "reproduction"
evidence=IMP] [GO:0040035 "hermaphrodite genitalia development"
evidence=IMP] InterPro:IPR000330 InterPro:IPR001487
InterPro:IPR001650 InterPro:IPR006576 InterPro:IPR014978
Pfam:PF00176 Pfam:PF00271 Pfam:PF00439 Pfam:PF07533 Pfam:PF08880
PRINTS:PR00503 PROSITE:PS50014 PROSITE:PS51194 SMART:SM00297
SMART:SM00490 SMART:SM00592 SMART:SM00951 GO:GO:0005524
GO:GO:0005634 GO:GO:0009792 GO:GO:0040010 GO:GO:0006355
GO:GO:0003677 GO:GO:0040035 GO:GO:0004386 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 Gene3D:1.20.920.10 SUPFAM:SSF47370
PROSITE:PS00633 InterPro:IPR018359 KO:K11647
GeneTree:ENSGT00550000074659 OMA:QKKYTIS InterPro:IPR013999
InterPro:IPR014012 InterPro:IPR006562 Pfam:PF07529 SMART:SM00573
PROSITE:PS51204 EMBL:Z68751 EMBL:Z68341 EMBL:AF230280 PIR:T20488
RefSeq:NP_502082.1 UniGene:Cel.23435 ProteinModelPortal:G5EF53
SMR:G5EF53 EnsemblMetazoa:F01G4.1 GeneID:178015
KEGG:cel:CELE_F01G4.1 CTD:178015 WormBase:F01G4.1 NextBio:899366
Uniprot:G5EF53
Length = 1474
Score = 138 (53.6 bits), Expect = 6.4e-14, Sum P(2) = 6.4e-14
Identities = 27/62 (43%), Positives = 42/62 (67%)
Query: 172 DLVVESGKLKKLDEILPDLKKNGHRVLIFSQFIFVLDILGHYMDIRGWRHLRLDGATQVS 231
DL+ +GKL+ LD ILP LK GHR+L+F Q +++I +++ R + +LRLDG+T+
Sbjct: 844 DLMRVAGKLELLDRILPKLKATGHRILMFFQMTSMMNIFEDFLNFRRYTYLRLDGSTKPD 903
Query: 232 SR 233
R
Sbjct: 904 ER 905
Score = 116 (45.9 bits), Expect = 6.4e-14, Sum P(2) = 6.4e-14
Identities = 29/77 (37%), Positives = 41/77 (53%)
Query: 31 RIISPFMLRRLKKDVLTELPKKTALVIKVPMIPSQAEKYRGLMEDFKKTANPEGSNRSNE 90
+++ PF+LRRLKK+V ++LP KT VIK Q YR + + A RS
Sbjct: 749 KVLRPFLLRRLKKEVESQLPDKTEYVIKCDQSALQKVIYRHMQKGLLLDAKMSSGARSL- 807
Query: 91 ISHMSMFMMLRKMANHP 107
M+ + LRK+ NHP
Sbjct: 808 ---MNTVVHLRKLCNHP 821
Score = 46 (21.3 bits), Expect = 1.1e-06, Sum P(2) = 1.1e-06
Identities = 25/89 (28%), Positives = 32/89 (35%)
Query: 44 DVLTELPKKTALVIKVPMIPSQAEKYRGLMEDFKKTANPEG--SNRSNEISHMS------ 95
D + PK T L+ + P +AE L D K N NR IS S
Sbjct: 118 DAVMLRPKVTTLLPEPYEYPGEAENGEKLPYDLMKIFNLHQIRCNRPTTISVPSGIDPVG 177
Query: 96 MFMMLRKMANHPLGLRYYFQENTLREIAD 124
M M + +GLR N +I D
Sbjct: 178 MLKQRENMIQNRIGLRMKLLNNLPADIPD 206
Score = 37 (18.1 bits), Expect = 9.0e-06, Sum P(2) = 9.0e-06
Identities = 11/44 (25%), Positives = 22/44 (50%)
Query: 33 ISPFMLRRLKKDVLTE--LPKKTALVIKVPMIPSQAEKYRGLME 74
++P+ RR K+ L E + +K K+ + +K+ LM+
Sbjct: 246 LNPYAYRRTKRQSLREARVTEKLEKQQKMEQERKRRQKHTDLMQ 289
>UNIPROTKB|F1S8J5 [details] [associations]
symbol:CHD8 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0071339 "MLL1 complex" evidence=IEA] [GO:0060070
"canonical Wnt receptor signaling pathway" evidence=IEA]
[GO:0045945 "positive regulation of transcription from RNA
polymerase III promoter" evidence=IEA] [GO:0045944 "positive
regulation of transcription from RNA polymerase II promoter"
evidence=IEA] [GO:0045892 "negative regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0043066 "negative regulation of
apoptotic process" evidence=IEA] [GO:0043044 "ATP-dependent
chromatin remodeling" evidence=IEA] [GO:0035064 "methylated histone
residue binding" evidence=IEA] [GO:0030178 "negative regulation of
Wnt receptor signaling pathway" evidence=IEA] [GO:0008094
"DNA-dependent ATPase activity" evidence=IEA] [GO:0008013
"beta-catenin binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0003678 "DNA helicase activity" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0002039 "p53 binding"
evidence=IEA] [GO:0001701 "in utero embryonic development"
evidence=IEA] InterPro:IPR000330 InterPro:IPR000953
InterPro:IPR001650 InterPro:IPR006576 Pfam:PF00176 Pfam:PF00271
Pfam:PF07533 PROSITE:PS50013 PROSITE:PS51194 SMART:SM00298
SMART:SM00490 SMART:SM00592 Pfam:PF00385 GO:GO:0005524
GO:GO:0045892 GO:GO:0043066 GO:GO:0003677 GO:GO:0001701
GO:GO:0045944 GO:GO:0045945 GO:GO:0030178 GO:GO:0060070
InterPro:IPR016197 SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0003678 GO:GO:0043044 GO:GO:0071339
InterPro:IPR023780 GO:GO:0008094 GeneTree:ENSGT00560000077077
OMA:FLAYMED EMBL:FP340603 Ensembl:ENSSSCT00000002379
ArrayExpress:F1S8J5 Uniprot:F1S8J5
Length = 2569
Score = 134 (52.2 bits), Expect = 6.6e-14, Sum P(2) = 6.6e-14
Identities = 34/102 (33%), Positives = 55/102 (53%)
Query: 24 EQVDQAKRIISPFMLRRLKKDVLTELPKKTALVIKVPMIPSQAEKYRGLME-DFKKTANP 82
EQV + + I+ P MLRRLK+DV L K +I+V + Q + YR ++E +F +
Sbjct: 1016 EQVQKLQAILKPMMLRRLKEDVEKNLAPKQETIIEVELTNIQKKYYRAILEKNFSFLS-- 1073
Query: 83 EGSNRSNEISHMSMFMMLRKMANHPLGLRYYFQENTLREIAD 124
+G+ +N + ++ M LRK NHP + +E L E +
Sbjct: 1074 KGAGHTNMPNLLNTMMELRKCCNHPYLINAGAEEKILTEFRE 1115
Score = 126 (49.4 bits), Expect = 6.6e-14, Sum P(2) = 6.6e-14
Identities = 27/61 (44%), Positives = 40/61 (65%)
Query: 173 LVVESGKLKKLDEILPDLKKNGHRVLIFSQFIFVLDILGHYMDIRGWRHLRLDGATQVSS 232
+V +GKL +D++LP LK GH+VLIFSQ + LDIL Y+ R + + R+DG + +
Sbjct: 1129 MVRSAGKLVLIDKLLPKLKAGGHKVLIFSQMVRCLDILEDYLIQRRYLYERIDGRVRGNL 1188
Query: 233 R 233
R
Sbjct: 1189 R 1189
Score = 38 (18.4 bits), Expect = 7.7e-05, Sum P(2) = 7.7e-05
Identities = 14/49 (28%), Positives = 23/49 (46%)
Query: 143 DISWLSDYDIHQLSLKHKTLDCAKYKVPDDLVVESGKLKKLDEILPDLK 191
DIS L D + Q K LD ++LV+++ +++K LK
Sbjct: 1366 DIS-LDDPNFWQKWAKKADLDMDLLNSKNNLVIDTPRVRKQTRHFSTLK 1413
Score = 38 (18.4 bits), Expect = 0.00073, Sum P(2) = 0.00073
Identities = 8/18 (44%), Positives = 11/18 (61%)
Query: 132 YKGTNP--QYILEDISWL 147
YK N +Y LE ++WL
Sbjct: 805 YKNRNQLREYQLEGVNWL 822
>UNIPROTKB|E2QUS7 [details] [associations]
symbol:CHD8 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005634 "nucleus" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001650
InterPro:IPR006576 Pfam:PF00176 Pfam:PF00271 Pfam:PF07533
PROSITE:PS50013 PROSITE:PS51194 SMART:SM00298 SMART:SM00490
SMART:SM00592 Pfam:PF00385 GO:GO:0005524 GO:GO:0005634
GO:GO:0003677 GO:GO:0004386 InterPro:IPR016197 SUPFAM:SSF54160
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 InterPro:IPR023780
GeneTree:ENSGT00560000077077 OMA:FLAYMED EMBL:AAEX03009852
Ensembl:ENSCAFT00000009065 Uniprot:E2QUS7
Length = 2586
Score = 134 (52.2 bits), Expect = 6.7e-14, Sum P(2) = 6.7e-14
Identities = 34/102 (33%), Positives = 55/102 (53%)
Query: 24 EQVDQAKRIISPFMLRRLKKDVLTELPKKTALVIKVPMIPSQAEKYRGLME-DFKKTANP 82
EQV + + I+ P MLRRLK+DV L K +I+V + Q + YR ++E +F +
Sbjct: 1016 EQVQKLQAILKPMMLRRLKEDVEKNLAPKQETIIEVELTNIQKKYYRAILEKNFSFLS-- 1073
Query: 83 EGSNRSNEISHMSMFMMLRKMANHPLGLRYYFQENTLREIAD 124
+G+ +N + ++ M LRK NHP + +E L E +
Sbjct: 1074 KGAGHTNMPNLLNTMMELRKCCNHPYLINAGAEEKILTEFRE 1115
Score = 126 (49.4 bits), Expect = 6.7e-14, Sum P(2) = 6.7e-14
Identities = 27/61 (44%), Positives = 40/61 (65%)
Query: 173 LVVESGKLKKLDEILPDLKKNGHRVLIFSQFIFVLDILGHYMDIRGWRHLRLDGATQVSS 232
+V +GKL +D++LP LK GH+VLIFSQ + LDIL Y+ R + + R+DG + +
Sbjct: 1129 MVRSAGKLVLIDKLLPKLKAGGHKVLIFSQMVRCLDILEDYLIQRRYLYERIDGRVRGNL 1188
Query: 233 R 233
R
Sbjct: 1189 R 1189
Score = 38 (18.4 bits), Expect = 7.8e-05, Sum P(2) = 7.8e-05
Identities = 14/49 (28%), Positives = 23/49 (46%)
Query: 143 DISWLSDYDIHQLSLKHKTLDCAKYKVPDDLVVESGKLKKLDEILPDLK 191
DIS L D + Q K LD ++LV+++ +++K LK
Sbjct: 1366 DIS-LDDPNFWQKWAKKADLDMDLLNSKNNLVIDTPRVRKQTRHFSTLK 1413
Score = 38 (18.4 bits), Expect = 0.00074, Sum P(2) = 0.00074
Identities = 8/18 (44%), Positives = 11/18 (61%)
Query: 132 YKGTNP--QYILEDISWL 147
YK N +Y LE ++WL
Sbjct: 805 YKNRNQLREYQLEGVNWL 822
>UNIPROTKB|F1MJ46 [details] [associations]
symbol:SMARCA4 "Transcription activator BRG1" species:9913
"Bos taurus" [GO:0071565 "nBAF complex" evidence=IEA] [GO:0071564
"npBAF complex" evidence=IEA] [GO:0060347 "heart trabecula
formation" evidence=IEA] [GO:0060318 "definitive erythrocyte
differentiation" evidence=IEA] [GO:0048730 "epidermis
morphogenesis" evidence=IEA] [GO:0048562 "embryonic organ
morphogenesis" evidence=IEA] [GO:0045944 "positive regulation of
transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0043966 "histone H3 acetylation" evidence=IEA] [GO:0043388
"positive regulation of DNA binding" evidence=IEA] [GO:0035887
"aortic smooth muscle cell differentiation" evidence=IEA]
[GO:0035116 "embryonic hindlimb morphogenesis" evidence=IEA]
[GO:0030902 "hindbrain development" evidence=IEA] [GO:0030900
"forebrain development" evidence=IEA] [GO:0030216 "keratinocyte
differentiation" evidence=IEA] [GO:0030198 "extracellular matrix
organization" evidence=IEA] [GO:0019827 "stem cell maintenance"
evidence=IEA] [GO:0010424 "DNA methylation on cytosine within a CG
sequence" evidence=IEA] [GO:0008134 "transcription factor binding"
evidence=IEA] [GO:0007403 "glial cell fate determination"
evidence=IEA] [GO:0006346 "methylation-dependent chromatin
silencing" evidence=IEA] [GO:0006338 "chromatin remodeling"
evidence=IEA] [GO:0005726 "perichromatin fibrils" evidence=IEA]
[GO:0005719 "nuclear euchromatin" evidence=IEA] [GO:0003682
"chromatin binding" evidence=IEA] [GO:0001889 "liver development"
evidence=IEA] [GO:0001835 "blastocyst hatching" evidence=IEA]
[GO:0001832 "blastocyst growth" evidence=IEA] [GO:0001570
"vasculogenesis" evidence=IEA] [GO:0000977 "RNA polymerase II
regulatory region sequence-specific DNA binding" evidence=IEA]
[GO:0000902 "cell morphogenesis" evidence=IEA] [GO:0000792
"heterochromatin" evidence=IEA] [GO:0000122 "negative regulation of
transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] InterPro:IPR000330 InterPro:IPR001487
InterPro:IPR001650 InterPro:IPR006576 InterPro:IPR014978
Pfam:PF00176 Pfam:PF00271 Pfam:PF00439 Pfam:PF07533 Pfam:PF08880
PRINTS:PR00503 PROSITE:PS50014 PROSITE:PS51194 SMART:SM00297
SMART:SM00490 SMART:SM00592 SMART:SM00951 GO:GO:0005524
GO:GO:0030216 GO:GO:0045944 GO:GO:0030198 GO:GO:0030900
GO:GO:0001889 GO:GO:0003682 GO:GO:0006338 GO:GO:0000122
GO:GO:0071564 GO:GO:0071565 GO:GO:0000902 GO:GO:0004386
GO:GO:0001570 GO:GO:0035116 GO:GO:0005719 GO:GO:0030902
GO:GO:0048730 GO:GO:0000977 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0019827 Gene3D:1.20.920.10 SUPFAM:SSF47370
PROSITE:PS00633 InterPro:IPR018359 GO:GO:0000792 GO:GO:0060347
GO:GO:0043966 GO:GO:0043388 GeneTree:ENSGT00550000074659
InterPro:IPR013999 InterPro:IPR014012 InterPro:IPR006562
Pfam:PF07529 SMART:SM00573 PROSITE:PS51204 GO:GO:0001835
GO:GO:0007403 GO:GO:0006346 GO:GO:0010424 GO:GO:0060318
GO:GO:0048562 GO:GO:0001832 GO:GO:0005726 GO:GO:0035887
IPI:IPI00693529 OMA:HKPMESM EMBL:DAAA02019479 EMBL:DAAA02019480
EMBL:DAAA02019481 Ensembl:ENSBTAT00000025598 ArrayExpress:F1MJ46
Uniprot:F1MJ46
Length = 1604
Score = 136 (52.9 bits), Expect = 7.0e-14, Sum P(2) = 7.0e-14
Identities = 27/62 (43%), Positives = 38/62 (61%)
Query: 172 DLVVESGKLKKLDEILPDLKKNGHRVLIFSQFIFVLDILGHYMDIRGWRHLRLDGATQVS 231
DL SGK + LD ILP L+ H+VL+F Q ++ I+ Y RG+++LRLDG T+
Sbjct: 1066 DLYRASGKFELLDRILPKLRATNHKVLLFCQMTSLMTIMEDYFAYRGFKYLRLDGTTKAE 1125
Query: 232 SR 233
R
Sbjct: 1126 DR 1127
Score = 119 (46.9 bits), Expect = 7.0e-14, Sum P(2) = 7.0e-14
Identities = 33/90 (36%), Positives = 47/90 (52%)
Query: 31 RIISPFMLRRLKKDVLTELPKKTALVIKVPMIPSQAEKYRGLMEDFKKTANPEGSNRSNE 90
+++ PF+LRRLKK+V +LP+K VIK M Q YR + K +GS + +
Sbjct: 962 KVLRPFLLRRLKKEVEAQLPEKVEYVIKCDMSALQRVLYRHMQA--KGVLLTDGSEKDKK 1019
Query: 91 -----ISHMSMFMMLRKMANHPLGLRYYFQ 115
+ M+ M LRK+ NHP Y FQ
Sbjct: 1020 GKGGTKTLMNTIMQLRKICNHP----YMFQ 1045
Score = 43 (20.2 bits), Expect = 0.00057, Sum P(2) = 0.00057
Identities = 10/24 (41%), Positives = 16/24 (66%)
Query: 156 SLKHKTLDCAKYKVP-DDLVVESG 178
S++ K L AKYK+ D V+++G
Sbjct: 1199 SVEEKILAAAKYKLNVDQKVIQAG 1222
>UNIPROTKB|A7Z019 [details] [associations]
symbol:SMARCA4 "Transcription activator BRG1" species:9913
"Bos taurus" [GO:0071565 "nBAF complex" evidence=ISS] [GO:0071564
"npBAF complex" evidence=ISS] [GO:0060347 "heart trabecula
formation" evidence=IEA] [GO:0060318 "definitive erythrocyte
differentiation" evidence=IEA] [GO:0048730 "epidermis
morphogenesis" evidence=IEA] [GO:0048562 "embryonic organ
morphogenesis" evidence=IEA] [GO:0045944 "positive regulation of
transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0043966 "histone H3 acetylation" evidence=IEA] [GO:0043388
"positive regulation of DNA binding" evidence=IEA] [GO:0035887
"aortic smooth muscle cell differentiation" evidence=IEA]
[GO:0035116 "embryonic hindlimb morphogenesis" evidence=IEA]
[GO:0030902 "hindbrain development" evidence=IEA] [GO:0030900
"forebrain development" evidence=IEA] [GO:0030216 "keratinocyte
differentiation" evidence=IEA] [GO:0030198 "extracellular matrix
organization" evidence=IEA] [GO:0019827 "stem cell maintenance"
evidence=IEA] [GO:0010424 "DNA methylation on cytosine within a CG
sequence" evidence=IEA] [GO:0008134 "transcription factor binding"
evidence=IEA] [GO:0007403 "glial cell fate determination"
evidence=IEA] [GO:0006346 "methylation-dependent chromatin
silencing" evidence=IEA] [GO:0006338 "chromatin remodeling"
evidence=IEA] [GO:0005726 "perichromatin fibrils" evidence=IEA]
[GO:0005719 "nuclear euchromatin" evidence=IEA] [GO:0003682
"chromatin binding" evidence=IEA] [GO:0001889 "liver development"
evidence=IEA] [GO:0001835 "blastocyst hatching" evidence=IEA]
[GO:0001832 "blastocyst growth" evidence=IEA] [GO:0001570
"vasculogenesis" evidence=IEA] [GO:0000977 "RNA polymerase II
regulatory region sequence-specific DNA binding" evidence=IEA]
[GO:0000902 "cell morphogenesis" evidence=IEA] [GO:0000792
"heterochromatin" evidence=IEA] [GO:0000122 "negative regulation of
transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] InterPro:IPR000330 InterPro:IPR001487
InterPro:IPR001650 InterPro:IPR006576 InterPro:IPR014978
Pfam:PF00176 Pfam:PF00271 Pfam:PF00439 Pfam:PF07533 Pfam:PF08880
PRINTS:PR00503 PROSITE:PS50014 PROSITE:PS51194 SMART:SM00297
SMART:SM00490 SMART:SM00592 SMART:SM00951 GO:GO:0005524
GO:GO:0030216 GO:GO:0045944 GO:GO:0030198 GO:GO:0030900
GO:GO:0001889 GO:GO:0006351 GO:GO:0003682 GO:GO:0006338
GO:GO:0000122 GO:GO:0071564 GO:GO:0071565 GO:GO:0000902
GO:GO:0004386 GO:GO:0001570 GO:GO:0035116 GO:GO:0005719
GO:GO:0030902 GO:GO:0048730 GO:GO:0000977 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0019827
Gene3D:1.20.920.10 SUPFAM:SSF47370 PROSITE:PS00633
InterPro:IPR018359 GO:GO:0000792 GO:GO:0060347 GO:GO:0043966
GO:GO:0043388 KO:K11647 InterPro:IPR013999 InterPro:IPR014012
InterPro:IPR006562 Pfam:PF07529 SMART:SM00573 PROSITE:PS51204
GO:GO:0001835 GO:GO:0007403 GO:GO:0006346 GO:GO:0010424
GO:GO:0060318 GO:GO:0048562 GO:GO:0001832 GO:GO:0005726
HOGENOM:HOG000172363 HOVERGEN:HBG056636 GO:GO:0035887
OrthoDB:EOG418BMJ EMBL:BC153216 IPI:IPI00693529
RefSeq:NP_001099084.1 UniGene:Bt.27590 ProteinModelPortal:A7Z019
SMR:A7Z019 STRING:A7Z019 PRIDE:A7Z019 GeneID:414274 KEGG:bta:414274
CTD:6597 InParanoid:A7Z019 NextBio:20818684 ArrayExpress:A7Z019
Uniprot:A7Z019
Length = 1606
Score = 136 (52.9 bits), Expect = 7.0e-14, Sum P(2) = 7.0e-14
Identities = 27/62 (43%), Positives = 38/62 (61%)
Query: 172 DLVVESGKLKKLDEILPDLKKNGHRVLIFSQFIFVLDILGHYMDIRGWRHLRLDGATQVS 231
DL SGK + LD ILP L+ H+VL+F Q ++ I+ Y RG+++LRLDG T+
Sbjct: 1066 DLYRASGKFELLDRILPKLRATNHKVLLFCQMTSLMTIMEDYFAYRGFKYLRLDGTTKAE 1125
Query: 232 SR 233
R
Sbjct: 1126 DR 1127
Score = 119 (46.9 bits), Expect = 7.0e-14, Sum P(2) = 7.0e-14
Identities = 33/90 (36%), Positives = 47/90 (52%)
Query: 31 RIISPFMLRRLKKDVLTELPKKTALVIKVPMIPSQAEKYRGLMEDFKKTANPEGSNRSNE 90
+++ PF+LRRLKK+V +LP+K VIK M Q YR + K +GS + +
Sbjct: 962 KVLRPFLLRRLKKEVEAQLPEKVEYVIKCDMSALQRVLYRHMQA--KGVLLTDGSEKDKK 1019
Query: 91 -----ISHMSMFMMLRKMANHPLGLRYYFQ 115
+ M+ M LRK+ NHP Y FQ
Sbjct: 1020 GKGGTKTLMNTIMQLRKICNHP----YMFQ 1045
Score = 43 (20.2 bits), Expect = 0.00057, Sum P(2) = 0.00057
Identities = 10/24 (41%), Positives = 16/24 (66%)
Query: 156 SLKHKTLDCAKYKVP-DDLVVESG 178
S++ K L AKYK+ D V+++G
Sbjct: 1201 SVEEKILAAAKYKLNVDQKVIQAG 1224
>MGI|MGI:88192 [details] [associations]
symbol:Smarca4 "SWI/SNF related, matrix associated, actin
dependent regulator of chromatin, subfamily a, member 4"
species:10090 "Mus musculus" [GO:0000122 "negative regulation of
transcription from RNA polymerase II promoter" evidence=IMP;IDA]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0000790 "nuclear
chromatin" evidence=ISO] [GO:0000792 "heterochromatin"
evidence=IDA] [GO:0000902 "cell morphogenesis" evidence=IMP]
[GO:0000977 "RNA polymerase II regulatory region sequence-specific
DNA binding" evidence=IDA] [GO:0001105 "RNA polymerase II
transcription coactivator activity" evidence=ISO] [GO:0001570
"vasculogenesis" evidence=IMP] [GO:0001701 "in utero embryonic
development" evidence=IMP] [GO:0001832 "blastocyst growth"
evidence=IMP] [GO:0001835 "blastocyst hatching" evidence=IMP]
[GO:0001889 "liver development" evidence=IMP] [GO:0002039 "p53
binding" evidence=ISO] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0003682
"chromatin binding" evidence=IDA] [GO:0003713 "transcription
coactivator activity" evidence=ISO] [GO:0003714 "transcription
corepressor activity" evidence=ISO] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISO;IDA] [GO:0005719 "nuclear euchromatin" evidence=IDA]
[GO:0005726 "perichromatin fibrils" evidence=IDA] [GO:0005730
"nucleolus" evidence=IDA] [GO:0006200 "ATP catabolic process"
evidence=TAS] [GO:0006334 "nucleosome assembly" evidence=TAS]
[GO:0006337 "nucleosome disassembly" evidence=ISO] [GO:0006338
"chromatin remodeling" evidence=ISO;IMP] [GO:0006346
"methylation-dependent chromatin silencing" evidence=IDA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0007399 "nervous system development"
evidence=IMP] [GO:0007403 "glial cell fate determination"
evidence=IMP] [GO:0007507 "heart development" evidence=IMP]
[GO:0008094 "DNA-dependent ATPase activity" evidence=ISO]
[GO:0008134 "transcription factor binding" evidence=IPI]
[GO:0010424 "DNA methylation on cytosine within a CG sequence"
evidence=IMP] [GO:0016514 "SWI/SNF complex" evidence=ISO;IDA;TAS]
[GO:0016568 "chromatin modification" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0016817 "hydrolase activity,
acting on acid anhydrides" evidence=IEA] [GO:0016818 "hydrolase
activity, acting on acid anhydrides, in phosphorus-containing
anhydrides" evidence=IEA] [GO:0016887 "ATPase activity"
evidence=IMP;TAS] [GO:0019827 "stem cell maintenance" evidence=IMP]
[GO:0022008 "neurogenesis" evidence=IDA] [GO:0030198 "extracellular
matrix organization" evidence=IMP] [GO:0030216 "keratinocyte
differentiation" evidence=IMP] [GO:0030308 "negative regulation of
cell growth" evidence=ISO] [GO:0030900 "forebrain development"
evidence=IMP] [GO:0030902 "hindbrain development" evidence=IMP]
[GO:0030957 "Tat protein binding" evidence=ISO] [GO:0032403
"protein complex binding" evidence=ISO] [GO:0035116 "embryonic
hindlimb morphogenesis" evidence=IMP] [GO:0035887 "aortic smooth
muscle cell differentiation" evidence=IMP] [GO:0043044
"ATP-dependent chromatin remodeling" evidence=ISO] [GO:0043388
"positive regulation of DNA binding" evidence=IGI] [GO:0043923
"positive regulation by host of viral transcription" evidence=ISO]
[GO:0043966 "histone H3 acetylation" evidence=IMP] [GO:0045892
"negative regulation of transcription, DNA-dependent" evidence=ISO]
[GO:0045893 "positive regulation of transcription, DNA-dependent"
evidence=ISO] [GO:0045944 "positive regulation of transcription
from RNA polymerase II promoter" evidence=IGI;ISO;IMP] [GO:0047485
"protein N-terminus binding" evidence=ISO] [GO:0048562 "embryonic
organ morphogenesis" evidence=IMP] [GO:0048730 "epidermis
morphogenesis" evidence=IMP] [GO:0050681 "androgen receptor
binding" evidence=ISO] [GO:0051091 "positive regulation of
sequence-specific DNA binding transcription factor activity"
evidence=ISO] [GO:0060318 "definitive erythrocyte differentiation"
evidence=IMP] [GO:0060347 "heart trabecula formation" evidence=IGI]
[GO:0060766 "negative regulation of androgen receptor signaling
pathway" evidence=ISO] [GO:0070577 "histone acetyl-lysine binding"
evidence=ISO] [GO:0071564 "npBAF complex" evidence=ISO;IDA]
[GO:0071565 "nBAF complex" evidence=IDA] [GO:0071778 "WINAC
complex" evidence=ISO] InterPro:IPR000330 InterPro:IPR001487
InterPro:IPR001650 InterPro:IPR006576 InterPro:IPR014978
Pfam:PF00176 Pfam:PF00271 Pfam:PF00439 Pfam:PF07533 Pfam:PF08880
PRINTS:PR00503 PROSITE:PS50014 PROSITE:PS51194 SMART:SM00297
SMART:SM00490 SMART:SM00592 SMART:SM00951 MGI:MGI:88192
GO:GO:0005524 GO:GO:0003714 GO:GO:0030216 GO:GO:0045944
GO:GO:0030198 GO:GO:0030900 GO:GO:0001889 EMBL:CH466522
GO:GO:0006351 GO:GO:0003682 GO:GO:0016887 GO:GO:0006338
GO:GO:0000122 GO:GO:0071564 GO:GO:0016514 GO:GO:0071565
GO:GO:0000902 GO:GO:0004386 GO:GO:0001570 GO:GO:0035116
GO:GO:0005719 GO:GO:0030902 GO:GO:0048730 GO:GO:0000977
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0019827 GO:GO:0006334 Gene3D:1.20.920.10 SUPFAM:SSF47370
PROSITE:PS00633 InterPro:IPR018359 GO:GO:0000792 GO:GO:0060347
GO:GO:0043966 GO:GO:0043388 KO:K11647 GeneTree:ENSGT00550000074659
InterPro:IPR013999 InterPro:IPR014012 InterPro:IPR006562
Pfam:PF07529 SMART:SM00573 PROSITE:PS51204 GO:GO:0001835
GO:GO:0007403 GO:GO:0006346 GO:GO:0010424 GO:GO:0060318
GO:GO:0048562 GO:GO:0001832 GO:GO:0005726 HOGENOM:HOG000172363
HOVERGEN:HBG056636 GO:GO:0035887 OrthoDB:EOG418BMJ CTD:6597
EMBL:AK147285 EMBL:AK160825 EMBL:AK166837 EMBL:BC079560
IPI:IPI00875789 IPI:IPI00955124 RefSeq:NP_001167549.1
RefSeq:NP_001167550.1 RefSeq:NP_035547.2 UniGene:Mm.286593
ProteinModelPortal:Q3TKT4 SMR:Q3TKT4 DIP:DIP-40650N DIP:DIP-59249N
IntAct:Q3TKT4 MINT:MINT-1958721 STRING:Q3TKT4 PhosphoSite:Q3TKT4
PaxDb:Q3TKT4 PRIDE:Q3TKT4 Ensembl:ENSMUST00000034707
Ensembl:ENSMUST00000098948 Ensembl:ENSMUST00000174008 GeneID:20586
KEGG:mmu:20586 UCSC:uc009omd.2 UCSC:uc009ome.2 InParanoid:Q3TUD7
NextBio:298883 Bgee:Q3TKT4 Genevestigator:Q3TKT4 Uniprot:Q3TKT4
Length = 1613
Score = 136 (52.9 bits), Expect = 7.1e-14, Sum P(2) = 7.1e-14
Identities = 27/62 (43%), Positives = 38/62 (61%)
Query: 172 DLVVESGKLKKLDEILPDLKKNGHRVLIFSQFIFVLDILGHYMDIRGWRHLRLDGATQVS 231
DL SGK + LD ILP L+ H+VL+F Q ++ I+ Y RG+++LRLDG T+
Sbjct: 1074 DLYRASGKFELLDRILPKLRATNHKVLLFCQMTSLMTIMEDYFAYRGFKYLRLDGTTKAE 1133
Query: 232 SR 233
R
Sbjct: 1134 DR 1135
Score = 119 (46.9 bits), Expect = 7.1e-14, Sum P(2) = 7.1e-14
Identities = 33/90 (36%), Positives = 47/90 (52%)
Query: 31 RIISPFMLRRLKKDVLTELPKKTALVIKVPMIPSQAEKYRGLMEDFKKTANPEGSNRSNE 90
+++ PF+LRRLKK+V +LP+K VIK M Q YR + K +GS + +
Sbjct: 970 KVLRPFLLRRLKKEVEAQLPEKVEYVIKCDMSALQRVLYRHMQA--KGVLLTDGSEKDKK 1027
Query: 91 -----ISHMSMFMMLRKMANHPLGLRYYFQ 115
+ M+ M LRK+ NHP Y FQ
Sbjct: 1028 GKGGTKTLMNTIMQLRKICNHP----YMFQ 1053
Score = 43 (20.2 bits), Expect = 0.00058, Sum P(2) = 0.00058
Identities = 10/24 (41%), Positives = 16/24 (66%)
Query: 156 SLKHKTLDCAKYKVP-DDLVVESG 178
S++ K L AKYK+ D V+++G
Sbjct: 1209 SVEEKILAAAKYKLNVDQKVIQAG 1232
>RGD|621728 [details] [associations]
symbol:Smarca4 "SWI/SNF related, matrix associated, actin
dependent regulator of chromatin, subfamily a, member 4"
species:10116 "Rattus norvegicus" [GO:0000122 "negative regulation
of transcription from RNA polymerase II promoter" evidence=ISO]
[GO:0000790 "nuclear chromatin" evidence=ISO] [GO:0000792
"heterochromatin" evidence=ISO] [GO:0000902 "cell morphogenesis"
evidence=ISO] [GO:0000977 "RNA polymerase II regulatory region
sequence-specific DNA binding" evidence=ISO] [GO:0001105 "RNA
polymerase II transcription coactivator activity" evidence=ISO]
[GO:0001570 "vasculogenesis" evidence=ISO] [GO:0001701 "in utero
embryonic development" evidence=ISO] [GO:0001832 "blastocyst
growth" evidence=ISO] [GO:0001835 "blastocyst hatching"
evidence=ISO] [GO:0001889 "liver development" evidence=ISO]
[GO:0002039 "p53 binding" evidence=ISO] [GO:0003407 "neural retina
development" evidence=ISO] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0003682 "chromatin binding" evidence=ISO] [GO:0003713
"transcription coactivator activity" evidence=ISO] [GO:0003714
"transcription corepressor activity" evidence=ISO;ISS] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005515 "protein binding"
evidence=IPI] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
"nucleus" evidence=ISO;IDA] [GO:0005719 "nuclear euchromatin"
evidence=ISO] [GO:0005726 "perichromatin fibrils" evidence=ISO]
[GO:0006337 "nucleosome disassembly" evidence=ISO;IDA] [GO:0006338
"chromatin remodeling" evidence=ISO] [GO:0006346
"methylation-dependent chromatin silencing" evidence=ISO]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0007399 "nervous system development"
evidence=IEA;ISO] [GO:0007403 "glial cell fate determination"
evidence=ISO] [GO:0007507 "heart development" evidence=ISO]
[GO:0008094 "DNA-dependent ATPase activity" evidence=ISO]
[GO:0008134 "transcription factor binding" evidence=ISO]
[GO:0010424 "DNA methylation on cytosine within a CG sequence"
evidence=ISO] [GO:0016514 "SWI/SNF complex" evidence=ISO;IDA]
[GO:0016887 "ATPase activity" evidence=ISO] [GO:0019827 "stem cell
maintenance" evidence=ISO] [GO:0022008 "neurogenesis" evidence=ISO]
[GO:0030198 "extracellular matrix organization" evidence=ISO]
[GO:0030216 "keratinocyte differentiation" evidence=ISO]
[GO:0030308 "negative regulation of cell growth" evidence=ISO]
[GO:0030900 "forebrain development" evidence=ISO] [GO:0030902
"hindbrain development" evidence=ISO] [GO:0030957 "Tat protein
binding" evidence=ISO] [GO:0032403 "protein complex binding"
evidence=IDA] [GO:0035116 "embryonic hindlimb morphogenesis"
evidence=ISO] [GO:0035887 "aortic smooth muscle cell
differentiation" evidence=ISO] [GO:0043044 "ATP-dependent chromatin
remodeling" evidence=IDA] [GO:0043388 "positive regulation of DNA
binding" evidence=ISO] [GO:0043923 "positive regulation by host of
viral transcription" evidence=ISO] [GO:0043966 "histone H3
acetylation" evidence=ISO] [GO:0045892 "negative regulation of
transcription, DNA-dependent" evidence=ISO] [GO:0045893 "positive
regulation of transcription, DNA-dependent" evidence=ISO]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=ISO] [GO:0047485 "protein
N-terminus binding" evidence=ISO] [GO:0048562 "embryonic organ
morphogenesis" evidence=ISO] [GO:0048730 "epidermis morphogenesis"
evidence=ISO] [GO:0050681 "androgen receptor binding" evidence=ISO]
[GO:0051091 "positive regulation of sequence-specific DNA binding
transcription factor activity" evidence=ISO] [GO:0060318
"definitive erythrocyte differentiation" evidence=ISO] [GO:0060347
"heart trabecula formation" evidence=ISO] [GO:0060766 "negative
regulation of androgen receptor signaling pathway" evidence=ISO]
[GO:0070577 "histone acetyl-lysine binding" evidence=ISO]
[GO:0071564 "npBAF complex" evidence=ISO;ISS] [GO:0071565 "nBAF
complex" evidence=ISO;ISS] [GO:0071778 "WINAC complex"
evidence=ISO] [GO:0005730 "nucleolus" evidence=ISO]
InterPro:IPR000330 InterPro:IPR001487 InterPro:IPR001650
InterPro:IPR006576 InterPro:IPR014978 Pfam:PF00176 Pfam:PF00271
Pfam:PF00439 Pfam:PF07533 Pfam:PF08880 PRINTS:PR00503
PROSITE:PS50014 PROSITE:PS51194 SMART:SM00297 SMART:SM00490
SMART:SM00592 SMART:SM00951 RGD:621728 GO:GO:0005524 GO:GO:0003714
GO:GO:0007399 GO:GO:0006355 GO:GO:0032403 GO:GO:0003677
GO:GO:0006351 GO:GO:0071564 GO:GO:0016514 GO:GO:0071565
GO:GO:0004386 GO:GO:0006337 eggNOG:COG0553 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0043044 Gene3D:1.20.920.10
SUPFAM:SSF47370 PROSITE:PS00633 InterPro:IPR018359
InterPro:IPR013999 InterPro:IPR014012 InterPro:IPR006562
Pfam:PF07529 SMART:SM00573 PROSITE:PS51204 HOGENOM:HOG000172363
HOVERGEN:HBG056636 EMBL:AJ504723 IPI:IPI00781891 UniGene:Rn.23417
ProteinModelPortal:Q8K1P7 SMR:Q8K1P7 IntAct:Q8K1P7 STRING:Q8K1P7
PhosphoSite:Q8K1P7 PRIDE:Q8K1P7 UCSC:RGD:621728 ArrayExpress:Q8K1P7
Genevestigator:Q8K1P7 Uniprot:Q8K1P7
Length = 1613
Score = 136 (52.9 bits), Expect = 7.1e-14, Sum P(2) = 7.1e-14
Identities = 27/62 (43%), Positives = 38/62 (61%)
Query: 172 DLVVESGKLKKLDEILPDLKKNGHRVLIFSQFIFVLDILGHYMDIRGWRHLRLDGATQVS 231
DL SGK + LD ILP L+ H+VL+F Q ++ I+ Y RG+++LRLDG T+
Sbjct: 1074 DLYRASGKFELLDRILPKLRATNHKVLLFCQMTSLMTIMEDYFAYRGFKYLRLDGTTKAE 1133
Query: 232 SR 233
R
Sbjct: 1134 DR 1135
Score = 119 (46.9 bits), Expect = 7.1e-14, Sum P(2) = 7.1e-14
Identities = 33/90 (36%), Positives = 47/90 (52%)
Query: 31 RIISPFMLRRLKKDVLTELPKKTALVIKVPMIPSQAEKYRGLMEDFKKTANPEGSNRSNE 90
+++ PF+LRRLKK+V +LP+K VIK M Q YR + K +GS + +
Sbjct: 970 KVLRPFLLRRLKKEVEAQLPEKVEYVIKCDMSALQRVLYRHMQA--KGVLLTDGSEKDKK 1027
Query: 91 -----ISHMSMFMMLRKMANHPLGLRYYFQ 115
+ M+ M LRK+ NHP Y FQ
Sbjct: 1028 GKGGTKTLMNTIMQLRKICNHP----YMFQ 1053
Score = 43 (20.2 bits), Expect = 0.00058, Sum P(2) = 0.00058
Identities = 10/24 (41%), Positives = 16/24 (66%)
Query: 156 SLKHKTLDCAKYKVP-DDLVVESG 178
S++ K L AKYK+ D V+++G
Sbjct: 1209 SVEEKILAAAKYKLNVDQKVIQAG 1232
>UNIPROTKB|E2RJ89 [details] [associations]
symbol:SMARCA4 "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001487 InterPro:IPR001650
InterPro:IPR006576 InterPro:IPR014978 Pfam:PF00176 Pfam:PF00271
Pfam:PF00439 Pfam:PF07533 Pfam:PF08880 PRINTS:PR00503
PROSITE:PS50014 PROSITE:PS51194 SMART:SM00297 SMART:SM00490
SMART:SM00592 SMART:SM00951 GO:GO:0005524 GO:GO:0005634
GO:GO:0006355 GO:GO:0003677 GO:GO:0004386 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 Gene3D:1.20.920.10 SUPFAM:SSF47370
PROSITE:PS00633 InterPro:IPR018359 KO:K11647
GeneTree:ENSGT00550000074659 InterPro:IPR013999 InterPro:IPR014012
InterPro:IPR006562 Pfam:PF07529 SMART:SM00573 PROSITE:PS51204
CTD:6597 EMBL:AAEX03012414 RefSeq:XP_867683.1
Ensembl:ENSCAFT00000027907 GeneID:476710 KEGG:cfa:476710
OMA:HKPMESM Uniprot:E2RJ89
Length = 1614
Score = 136 (52.9 bits), Expect = 7.1e-14, Sum P(2) = 7.1e-14
Identities = 27/62 (43%), Positives = 38/62 (61%)
Query: 172 DLVVESGKLKKLDEILPDLKKNGHRVLIFSQFIFVLDILGHYMDIRGWRHLRLDGATQVS 231
DL SGK + LD ILP L+ H+VL+F Q ++ I+ Y RG+++LRLDG T+
Sbjct: 1074 DLYRASGKFELLDRILPKLRATNHKVLLFCQMTSLMTIMEDYFAYRGFKYLRLDGTTKAE 1133
Query: 232 SR 233
R
Sbjct: 1134 DR 1135
Score = 119 (46.9 bits), Expect = 7.1e-14, Sum P(2) = 7.1e-14
Identities = 33/90 (36%), Positives = 47/90 (52%)
Query: 31 RIISPFMLRRLKKDVLTELPKKTALVIKVPMIPSQAEKYRGLMEDFKKTANPEGSNRSNE 90
+++ PF+LRRLKK+V +LP+K VIK M Q YR + K +GS + +
Sbjct: 970 KVLRPFLLRRLKKEVEAQLPEKVEYVIKCDMSALQRVLYRHMQA--KGVLLTDGSEKDKK 1027
Query: 91 -----ISHMSMFMMLRKMANHPLGLRYYFQ 115
+ M+ M LRK+ NHP Y FQ
Sbjct: 1028 GKGGTKTLMNTIMQLRKICNHP----YMFQ 1053
Score = 43 (20.2 bits), Expect = 0.00058, Sum P(2) = 0.00058
Identities = 10/24 (41%), Positives = 16/24 (66%)
Query: 156 SLKHKTLDCAKYKVP-DDLVVESG 178
S++ K L AKYK+ D V+++G
Sbjct: 1209 SVEEKILAAAKYKLNVDQKVIQAG 1232
>UNIPROTKB|G3V790 [details] [associations]
symbol:Smarca4 "SWI/SNF related, matrix associated, actin
dependent regulator of chromatin, subfamily a, member 4, isoform
CRA_b" species:10116 "Rattus norvegicus" [GO:0000122 "negative
regulation of transcription from RNA polymerase II promoter"
evidence=IEA] [GO:0000792 "heterochromatin" evidence=IEA]
[GO:0000902 "cell morphogenesis" evidence=IEA] [GO:0000977 "RNA
polymerase II regulatory region sequence-specific DNA binding"
evidence=IEA] [GO:0001570 "vasculogenesis" evidence=IEA]
[GO:0001832 "blastocyst growth" evidence=IEA] [GO:0001835
"blastocyst hatching" evidence=IEA] [GO:0001889 "liver development"
evidence=IEA] [GO:0003682 "chromatin binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0005719 "nuclear euchromatin"
evidence=IEA] [GO:0005726 "perichromatin fibrils" evidence=IEA]
[GO:0006338 "chromatin remodeling" evidence=IEA] [GO:0006346
"methylation-dependent chromatin silencing" evidence=IEA]
[GO:0007403 "glial cell fate determination" evidence=IEA]
[GO:0008134 "transcription factor binding" evidence=IEA]
[GO:0010424 "DNA methylation on cytosine within a CG sequence"
evidence=IEA] [GO:0019827 "stem cell maintenance" evidence=IEA]
[GO:0030198 "extracellular matrix organization" evidence=IEA]
[GO:0030216 "keratinocyte differentiation" evidence=IEA]
[GO:0030900 "forebrain development" evidence=IEA] [GO:0030902
"hindbrain development" evidence=IEA] [GO:0035116 "embryonic
hindlimb morphogenesis" evidence=IEA] [GO:0035887 "aortic smooth
muscle cell differentiation" evidence=IEA] [GO:0043388 "positive
regulation of DNA binding" evidence=IEA] [GO:0043966 "histone H3
acetylation" evidence=IEA] [GO:0045944 "positive regulation of
transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0048562 "embryonic organ morphogenesis" evidence=IEA]
[GO:0048730 "epidermis morphogenesis" evidence=IEA] [GO:0060318
"definitive erythrocyte differentiation" evidence=IEA] [GO:0060347
"heart trabecula formation" evidence=IEA] [GO:0071564 "npBAF
complex" evidence=IEA] [GO:0071565 "nBAF complex" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001487 InterPro:IPR001650
InterPro:IPR006576 InterPro:IPR014978 Pfam:PF00176 Pfam:PF00271
Pfam:PF00439 Pfam:PF07533 Pfam:PF08880 PRINTS:PR00503
PROSITE:PS50014 PROSITE:PS51194 SMART:SM00297 SMART:SM00490
SMART:SM00592 SMART:SM00951 RGD:621728 GO:GO:0005524 GO:GO:0005634
GO:GO:0006355 GO:GO:0003677 GO:GO:0004386 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 Gene3D:1.20.920.10 SUPFAM:SSF47370
PROSITE:PS00633 InterPro:IPR018359 GeneTree:ENSGT00550000074659
InterPro:IPR013999 InterPro:IPR014012 InterPro:IPR006562
Pfam:PF07529 SMART:SM00573 PROSITE:PS51204 EMBL:CH473993
UniGene:Rn.23417 Ensembl:ENSRNOT00000013165 Uniprot:G3V790
Length = 1614
Score = 136 (52.9 bits), Expect = 7.1e-14, Sum P(2) = 7.1e-14
Identities = 27/62 (43%), Positives = 38/62 (61%)
Query: 172 DLVVESGKLKKLDEILPDLKKNGHRVLIFSQFIFVLDILGHYMDIRGWRHLRLDGATQVS 231
DL SGK + LD ILP L+ H+VL+F Q ++ I+ Y RG+++LRLDG T+
Sbjct: 1074 DLYRASGKFELLDRILPKLRATNHKVLLFCQMTSLMTIMEDYFAYRGFKYLRLDGTTKAE 1133
Query: 232 SR 233
R
Sbjct: 1134 DR 1135
Score = 119 (46.9 bits), Expect = 7.1e-14, Sum P(2) = 7.1e-14
Identities = 33/90 (36%), Positives = 47/90 (52%)
Query: 31 RIISPFMLRRLKKDVLTELPKKTALVIKVPMIPSQAEKYRGLMEDFKKTANPEGSNRSNE 90
+++ PF+LRRLKK+V +LP+K VIK M Q YR + K +GS + +
Sbjct: 970 KVLRPFLLRRLKKEVEAQLPEKVEYVIKCDMSALQRVLYRHMQA--KGVLLTDGSEKDKK 1027
Query: 91 -----ISHMSMFMMLRKMANHPLGLRYYFQ 115
+ M+ M LRK+ NHP Y FQ
Sbjct: 1028 GKGGTKTLMNTIMQLRKICNHP----YMFQ 1053
Score = 43 (20.2 bits), Expect = 0.00058, Sum P(2) = 0.00058
Identities = 10/24 (41%), Positives = 16/24 (66%)
Query: 156 SLKHKTLDCAKYKVP-DDLVVESG 178
S++ K L AKYK+ D V+++G
Sbjct: 1209 SVEEKILAAAKYKLNVDQKVIQAG 1232
>UNIPROTKB|F1M6Y4 [details] [associations]
symbol:Smarca4 "Transcription activator BRG1" species:10116
"Rattus norvegicus" [GO:0000122 "negative regulation of
transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0000792 "heterochromatin" evidence=IEA] [GO:0000902 "cell
morphogenesis" evidence=IEA] [GO:0000977 "RNA polymerase II
regulatory region sequence-specific DNA binding" evidence=IEA]
[GO:0001570 "vasculogenesis" evidence=IEA] [GO:0001832 "blastocyst
growth" evidence=IEA] [GO:0001835 "blastocyst hatching"
evidence=IEA] [GO:0001889 "liver development" evidence=IEA]
[GO:0003682 "chromatin binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005719 "nuclear euchromatin" evidence=IEA] [GO:0005726
"perichromatin fibrils" evidence=IEA] [GO:0006338 "chromatin
remodeling" evidence=IEA] [GO:0006346 "methylation-dependent
chromatin silencing" evidence=IEA] [GO:0007403 "glial cell fate
determination" evidence=IEA] [GO:0008134 "transcription factor
binding" evidence=IEA] [GO:0010424 "DNA methylation on cytosine
within a CG sequence" evidence=IEA] [GO:0019827 "stem cell
maintenance" evidence=IEA] [GO:0030198 "extracellular matrix
organization" evidence=IEA] [GO:0030216 "keratinocyte
differentiation" evidence=IEA] [GO:0030900 "forebrain development"
evidence=IEA] [GO:0030902 "hindbrain development" evidence=IEA]
[GO:0035116 "embryonic hindlimb morphogenesis" evidence=IEA]
[GO:0035887 "aortic smooth muscle cell differentiation"
evidence=IEA] [GO:0043388 "positive regulation of DNA binding"
evidence=IEA] [GO:0043966 "histone H3 acetylation" evidence=IEA]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=IEA] [GO:0048562 "embryonic organ
morphogenesis" evidence=IEA] [GO:0048730 "epidermis morphogenesis"
evidence=IEA] [GO:0060318 "definitive erythrocyte differentiation"
evidence=IEA] [GO:0060347 "heart trabecula formation" evidence=IEA]
[GO:0071564 "npBAF complex" evidence=IEA] [GO:0071565 "nBAF
complex" evidence=IEA] InterPro:IPR000330 InterPro:IPR001487
InterPro:IPR001650 InterPro:IPR006576 InterPro:IPR014978
Pfam:PF00176 Pfam:PF00271 Pfam:PF00439 Pfam:PF07533 Pfam:PF08880
PRINTS:PR00503 PROSITE:PS50014 PROSITE:PS51194 SMART:SM00297
SMART:SM00490 SMART:SM00592 SMART:SM00951 RGD:621728 GO:GO:0005524
GO:GO:0030216 GO:GO:0045944 GO:GO:0030198 GO:GO:0030900
GO:GO:0001889 GO:GO:0003682 GO:GO:0006338 GO:GO:0000122
GO:GO:0071564 GO:GO:0071565 GO:GO:0000902 GO:GO:0004386
GO:GO:0001570 GO:GO:0035116 GO:GO:0005719 GO:GO:0030902
GO:GO:0048730 GO:GO:0000977 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0019827 Gene3D:1.20.920.10 SUPFAM:SSF47370
PROSITE:PS00633 InterPro:IPR018359 GO:GO:0000792 GO:GO:0060347
GO:GO:0043966 GO:GO:0043388 InterPro:IPR013999 InterPro:IPR014012
InterPro:IPR006562 Pfam:PF07529 SMART:SM00573 PROSITE:PS51204
GO:GO:0001835 GO:GO:0007403 GO:GO:0006346 GO:GO:0010424
GO:GO:0060318 GO:GO:0048562 GO:GO:0001832 GO:GO:0005726
GO:GO:0035887 IPI:IPI00951882 Ensembl:ENSRNOT00000060927
ArrayExpress:F1M6Y4 Uniprot:F1M6Y4
Length = 1618
Score = 136 (52.9 bits), Expect = 7.1e-14, Sum P(2) = 7.1e-14
Identities = 27/62 (43%), Positives = 38/62 (61%)
Query: 172 DLVVESGKLKKLDEILPDLKKNGHRVLIFSQFIFVLDILGHYMDIRGWRHLRLDGATQVS 231
DL SGK + LD ILP L+ H+VL+F Q ++ I+ Y RG+++LRLDG T+
Sbjct: 1074 DLYRASGKFELLDRILPKLRATNHKVLLFCQMTSLMTIMEDYFAYRGFKYLRLDGTTKAE 1133
Query: 232 SR 233
R
Sbjct: 1134 DR 1135
Score = 119 (46.9 bits), Expect = 7.1e-14, Sum P(2) = 7.1e-14
Identities = 33/90 (36%), Positives = 47/90 (52%)
Query: 31 RIISPFMLRRLKKDVLTELPKKTALVIKVPMIPSQAEKYRGLMEDFKKTANPEGSNRSNE 90
+++ PF+LRRLKK+V +LP+K VIK M Q YR + K +GS + +
Sbjct: 970 KVLRPFLLRRLKKEVEAQLPEKVEYVIKCDMSALQRVLYRHMQA--KGVLLTDGSEKDKK 1027
Query: 91 -----ISHMSMFMMLRKMANHPLGLRYYFQ 115
+ M+ M LRK+ NHP Y FQ
Sbjct: 1028 GKGGTKTLMNTIMQLRKICNHP----YMFQ 1053
Score = 43 (20.2 bits), Expect = 0.00058, Sum P(2) = 0.00058
Identities = 10/24 (41%), Positives = 16/24 (66%)
Query: 156 SLKHKTLDCAKYKVP-DDLVVESG 178
S++ K L AKYK+ D V+++G
Sbjct: 1209 SVEEKILAAAKYKLNVDQKVIQAG 1232
>MGI|MGI:2444748 [details] [associations]
symbol:Chd7 "chromodomain helicase DNA binding protein 7"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0001501 "skeletal system development"
evidence=ISO] [GO:0001568 "blood vessel development" evidence=IMP]
[GO:0001701 "in utero embryonic development" evidence=ISO;IMP]
[GO:0003007 "heart morphogenesis" evidence=ISO;IMP] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0003682 "chromatin binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005515 "protein
binding" evidence=IPI] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=ISO] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0007417 "central
nervous system development" evidence=ISO] [GO:0007512 "adult heart
development" evidence=IMP] [GO:0007605 "sensory perception of
sound" evidence=IMP] [GO:0007626 "locomotory behavior"
evidence=IMP] [GO:0007628 "adult walking behavior" evidence=IMP]
[GO:0008015 "blood circulation" evidence=IMP] [GO:0016568
"chromatin modification" evidence=IEA] [GO:0016787 "hydrolase
activity" evidence=IEA] [GO:0016817 "hydrolase activity, acting on
acid anhydrides" evidence=IEA] [GO:0021545 "cranial nerve
development" evidence=ISO] [GO:0030217 "T cell differentiation"
evidence=ISO] [GO:0030540 "female genitalia development"
evidence=IMP] [GO:0035116 "embryonic hindlimb morphogenesis"
evidence=IMP] [GO:0040018 "positive regulation of multicellular
organism growth" evidence=IMP] [GO:0042471 "ear morphogenesis"
evidence=IMP] [GO:0042472 "inner ear morphogenesis"
evidence=ISO;IMP] [GO:0043010 "camera-type eye development"
evidence=IMP] [GO:0043584 "nose development" evidence=ISO;IMP]
[GO:0048752 "semicircular canal morphogenesis" evidence=IGI]
[GO:0048806 "genitalia development" evidence=ISO] [GO:0048844
"artery morphogenesis" evidence=IGI] [GO:0050890 "cognition"
evidence=ISO] [GO:0060021 "palate development" evidence=ISO;IMP]
[GO:0060041 "retina development in camera-type eye" evidence=ISO]
[GO:0060123 "regulation of growth hormone secretion" evidence=ISO]
[GO:0060173 "limb development" evidence=ISO] [GO:0060324 "face
development" evidence=ISO] InterPro:IPR000330 InterPro:IPR000953
InterPro:IPR001005 InterPro:IPR001650 InterPro:IPR006576
Pfam:PF00176 Pfam:PF00271 Pfam:PF07533 PROSITE:PS00690
PROSITE:PS50013 PROSITE:PS51194 SMART:SM00298 SMART:SM00490
SMART:SM00592 SMART:SM00717 MGI:MGI:2444748 Pfam:PF00385
GO:GO:0005524 GO:GO:0005634 GO:GO:0006355 GO:GO:0003677
GO:GO:0008015 GO:GO:0003007 GO:GO:0050890 GO:GO:0001701
GO:GO:0040018 GO:GO:0007417 GO:GO:0006351 GO:GO:0003682
GO:GO:0016568 GO:GO:0043010 GO:GO:0001501 GO:GO:0060041
GO:GO:0007605 GO:GO:0007512 GO:GO:0004386 GO:GO:0035116
GO:GO:0060324 GO:GO:0060021 GO:GO:0048844 InterPro:IPR016197
SUPFAM:SSF54160 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0030540 GO:GO:0007628 GO:GO:0030217
GO:GO:0048752 InterPro:IPR023780 PROSITE:PS00598 HOVERGEN:HBG081150
CTD:55636 HOGENOM:HOG000246942 KO:K14437 OrthoDB:EOG4MCWZD
OMA:TFGVIFD GO:GO:0021545 GO:GO:0043584 GO:GO:0060123 EMBL:AK042727
EMBL:AK171051 EMBL:AK171857 EMBL:AK172025 EMBL:AL732627
EMBL:AL805903 EMBL:BC034239 IPI:IPI00345676 IPI:IPI00666779
IPI:IPI00849588 RefSeq:NP_001074886.1 UniGene:Mm.138792
ProteinModelPortal:A2AJK6 SMR:A2AJK6 IntAct:A2AJK6 STRING:A2AJK6
PhosphoSite:A2AJK6 PaxDb:A2AJK6 PRIDE:A2AJK6
Ensembl:ENSMUST00000039267 Ensembl:ENSMUST00000051558
Ensembl:ENSMUST00000127476 GeneID:320790 KEGG:mmu:320790
UCSC:uc008rxy.1 UCSC:uc008rya.1 GeneTree:ENSGT00560000077077
InParanoid:A2AJK6 NextBio:397435 Bgee:A2AJK6 CleanEx:MM_CHD7
Genevestigator:A2AJK6 Uniprot:A2AJK6
Length = 2986
Score = 133 (51.9 bits), Expect = 7.4e-14, Sum P(2) = 7.4e-14
Identities = 37/111 (33%), Positives = 57/111 (51%)
Query: 24 EQVDQAKRIISPFMLRRLKKDVLTELPKKTALVIKVPMIPSQAEKYRGLMEDFKKTANPE 83
EQV + + I+ P MLRRLK+DV L K +I+V + Q + YR ++E T +
Sbjct: 1163 EQVQKLQAILKPMMLRRLKEDVEKNLAPKEETIIEVELTNIQKKYYRAILEK-NFTFLSK 1221
Query: 84 GSNRSNEISHMSMFMMLRKMANHPLGLRYYFQENTLREIADCL-VEDPTYK 133
G ++N + ++ M LRK NHP L +E L E + E P ++
Sbjct: 1222 GGGQANVPNLLNTMMELRKCCNHPY-LINGAEEKILEEFKETHNAESPDFQ 1271
Score = 128 (50.1 bits), Expect = 7.4e-14, Sum P(2) = 7.4e-14
Identities = 27/61 (44%), Positives = 40/61 (65%)
Query: 173 LVVESGKLKKLDEILPDLKKNGHRVLIFSQFIFVLDILGHYMDIRGWRHLRLDGATQVSS 232
++ +GKL +D++LP LK GHRVLIFSQ + LDIL Y+ R + + R+DG + +
Sbjct: 1275 MIQAAGKLVLIDKLLPKLKAGGHRVLIFSQMVRCLDILEDYLIQRRYPYERIDGRVRGNL 1334
Query: 233 R 233
R
Sbjct: 1335 R 1335
Score = 42 (19.8 bits), Expect = 0.00027, Sum P(3) = 0.00027
Identities = 20/94 (21%), Positives = 40/94 (42%)
Query: 12 EDKRKEQATFEVEQVDQAKRIISPFMLRRLKKDVLTELPKKTALVIKVPMIPSQAEKYRG 71
E++ + + +V Q ++ K+ P +++ K+ KK K P IP + ++ +
Sbjct: 618 ENQELRRNSLDVSQEEKKKKK-RP-KVKKDPKESKEPKEKKEPKTPKAPKIPKEPKEKKA 675
Query: 72 LMEDFKKTANPEGSNRSNEISHMSMFMMLRKMAN 105
T P+ S +S+ S L+K N
Sbjct: 676 KTV----TPKPKSSKKSSNKKPDSEASALKKKVN 705
Score = 39 (18.8 bits), Expect = 0.00011, Sum P(2) = 0.00011
Identities = 13/51 (25%), Positives = 26/51 (50%)
Query: 143 DISWLSDYDIHQLSLKHKTLDCAKYKVPDDLVVESGKLKKLDEILPDLKKN 193
DIS L D + Q K LD ++LV+++ +++K + +K++
Sbjct: 1512 DIS-LDDPNFWQKWAKKAELDIDALNGRNNLVIDTPRVRKQTRLYSAVKED 1561
Score = 39 (18.8 bits), Expect = 0.00027, Sum P(3) = 0.00027
Identities = 8/18 (44%), Positives = 11/18 (61%)
Query: 132 YKGTNP--QYILEDISWL 147
YK N +Y LE ++WL
Sbjct: 952 YKNNNKLREYQLEGVNWL 969
>UNIPROTKB|P51532 [details] [associations]
symbol:SMARCA4 "Transcription activator BRG1" species:9606
"Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0007399 "nervous system development"
evidence=IEA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0047485 "protein N-terminus binding" evidence=IPI] [GO:0016514
"SWI/SNF complex" evidence=IDA] [GO:0003714 "transcription
corepressor activity" evidence=IDA] [GO:0005634 "nucleus"
evidence=IDA] [GO:0071564 "npBAF complex" evidence=ISS;IDA]
[GO:0071565 "nBAF complex" evidence=ISS] [GO:0006338 "chromatin
remodeling" evidence=IC;IDA] [GO:0001105 "RNA polymerase II
transcription coactivator activity" evidence=IDA] [GO:0000790
"nuclear chromatin" evidence=IDA] [GO:0071778 "WINAC complex"
evidence=IDA] [GO:0045892 "negative regulation of transcription,
DNA-dependent" evidence=IMP;IDA] [GO:0030308 "negative regulation
of cell growth" evidence=IMP] [GO:0045944 "positive regulation of
transcription from RNA polymerase II promoter" evidence=IGI;IDA]
[GO:0060766 "negative regulation of androgen receptor signaling
pathway" evidence=IMP] [GO:0050681 "androgen receptor binding"
evidence=IPI] [GO:0008094 "DNA-dependent ATPase activity"
evidence=IGI] [GO:0045749 "negative regulation of S phase of
mitotic cell cycle" evidence=TAS] [GO:0070577 "histone
acetyl-lysine binding" evidence=IDA] [GO:0051091 "positive
regulation of sequence-specific DNA binding transcription factor
activity" evidence=IDA] [GO:0002039 "p53 binding" evidence=IPI]
[GO:0000122 "negative regulation of transcription from RNA
polymerase II promoter" evidence=TAS] [GO:0003713 "transcription
coactivator activity" evidence=IMP;NAS] [GO:0006357 "regulation of
transcription from RNA polymerase II promoter" evidence=NAS]
[GO:0006337 "nucleosome disassembly" evidence=IDA] [GO:0043923
"positive regulation by host of viral transcription" evidence=IMP]
[GO:0030957 "Tat protein binding" evidence=IPI] [GO:0003407 "neural
retina development" evidence=IEP] [GO:0045893 "positive regulation
of transcription, DNA-dependent" evidence=IMP] InterPro:IPR000330
InterPro:IPR001487 InterPro:IPR001650 InterPro:IPR006576
InterPro:IPR014978 Pfam:PF00176 Pfam:PF00271 Pfam:PF00439
Pfam:PF07533 Pfam:PF08880 PRINTS:PR00503 PROSITE:PS50014
PROSITE:PS51194 SMART:SM00297 SMART:SM00490 SMART:SM00592
SMART:SM00951 GO:GO:0005524 GO:GO:0003714 GO:GO:0007399
GO:GO:0051091 GO:GO:0030308 GO:GO:0003677 GO:GO:0006338
GO:GO:0000122 GO:GO:0000790 GO:GO:0071564 GO:GO:0016514
GO:GO:0003407 GO:GO:0071565 GO:GO:0004386 EMBL:CH471106
GO:GO:0001105 GO:GO:0045749 Orphanet:1465 GO:GO:0006337
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
Gene3D:1.20.920.10 SUPFAM:SSF47370 PROSITE:PS00633 GO:GO:0070577
InterPro:IPR018359 GO:GO:0071778 KO:K11647 InterPro:IPR013999
InterPro:IPR014012 InterPro:IPR006562 Pfam:PF07529 SMART:SM00573
PROSITE:PS51204 EMBL:AC011442 GO:GO:0008094 GO:GO:0060766
GO:GO:0043923 EMBL:AC011485 HOGENOM:HOG000172363 HOVERGEN:HBG056636
CTD:6597 EMBL:U29175 EMBL:D26156 EMBL:AF254822 EMBL:EU430756
EMBL:EU430757 EMBL:EU430758 EMBL:EU430759 EMBL:AC006127
IPI:IPI00293426 IPI:IPI00900285 IPI:IPI00900328 IPI:IPI00900338
IPI:IPI01016040 PIR:S45252 RefSeq:NP_001122316.1
RefSeq:NP_001122317.1 RefSeq:NP_001122318.1 RefSeq:NP_001122319.1
RefSeq:NP_001122320.1 RefSeq:NP_003063.2 UniGene:Hs.327527 PDB:2GRC
PDB:2H60 PDB:3UVD PDBsum:2GRC PDBsum:2H60 PDBsum:3UVD
ProteinModelPortal:P51532 SMR:P51532 DIP:DIP-24249N IntAct:P51532
MINT:MINT-204078 STRING:P51532 PhosphoSite:P51532 DMDM:116242792
PaxDb:P51532 PRIDE:P51532 Ensembl:ENST00000344626
Ensembl:ENST00000413806 Ensembl:ENST00000429416
Ensembl:ENST00000444061 Ensembl:ENST00000450717
Ensembl:ENST00000541122 GeneID:6597 KEGG:hsa:6597 UCSC:uc002mqf.4
GeneCards:GC19P011071 HGNC:HGNC:11100 HPA:CAB004208 MIM:603254
MIM:613325 MIM:614609 neXtProt:NX_P51532 Orphanet:231108
PharmGKB:PA35950 ChiTaRS:SMARCA4 EvolutionaryTrace:P51532
GenomeRNAi:6597 NextBio:25661 ArrayExpress:P51532 Bgee:P51532
CleanEx:HS_SMARCA4 Genevestigator:P51532 GermOnline:ENSG00000127616
Uniprot:P51532
Length = 1647
Score = 136 (52.9 bits), Expect = 7.4e-14, Sum P(2) = 7.4e-14
Identities = 27/62 (43%), Positives = 38/62 (61%)
Query: 172 DLVVESGKLKKLDEILPDLKKNGHRVLIFSQFIFVLDILGHYMDIRGWRHLRLDGATQVS 231
DL SGK + LD ILP L+ H+VL+F Q ++ I+ Y RG+++LRLDG T+
Sbjct: 1074 DLYRASGKFELLDRILPKLRATNHKVLLFCQMTSLMTIMEDYFAYRGFKYLRLDGTTKAE 1133
Query: 232 SR 233
R
Sbjct: 1134 DR 1135
Score = 119 (46.9 bits), Expect = 7.4e-14, Sum P(2) = 7.4e-14
Identities = 33/90 (36%), Positives = 47/90 (52%)
Query: 31 RIISPFMLRRLKKDVLTELPKKTALVIKVPMIPSQAEKYRGLMEDFKKTANPEGSNRSNE 90
+++ PF+LRRLKK+V +LP+K VIK M Q YR + K +GS + +
Sbjct: 970 KVLRPFLLRRLKKEVEAQLPEKVEYVIKCDMSALQRVLYRHMQA--KGVLLTDGSEKDKK 1027
Query: 91 -----ISHMSMFMMLRKMANHPLGLRYYFQ 115
+ M+ M LRK+ NHP Y FQ
Sbjct: 1028 GKGGTKTLMNTIMQLRKICNHP----YMFQ 1053
Score = 43 (20.2 bits), Expect = 0.00061, Sum P(2) = 0.00061
Identities = 10/24 (41%), Positives = 16/24 (66%)
Query: 156 SLKHKTLDCAKYKVP-DDLVVESG 178
S++ K L AKYK+ D V+++G
Sbjct: 1209 SVEEKILAAAKYKLNVDQKVIQAG 1232
>UNIPROTKB|Q9P2D1 [details] [associations]
symbol:CHD7 "Chromodomain-helicase-DNA-binding protein 7"
species:9606 "Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0016568 "chromatin modification" evidence=IEA]
[GO:0007512 "adult heart development" evidence=IEA] [GO:0007605
"sensory perception of sound" evidence=IEA] [GO:0007628 "adult
walking behavior" evidence=IEA] [GO:0008015 "blood circulation"
evidence=IEA] [GO:0030540 "female genitalia development"
evidence=IEA] [GO:0035116 "embryonic hindlimb morphogenesis"
evidence=IEA] [GO:0040018 "positive regulation of multicellular
organism growth" evidence=IEA] [GO:0048752 "semicircular canal
morphogenesis" evidence=IEA] [GO:0048844 "artery morphogenesis"
evidence=IEA] [GO:0005634 "nucleus" evidence=IDA;TAS] [GO:0005515
"protein binding" evidence=IPI] [GO:0001701 "in utero embryonic
development" evidence=IMP] [GO:0003007 "heart morphogenesis"
evidence=IMP] [GO:0042472 "inner ear morphogenesis" evidence=IMP]
[GO:0043584 "nose development" evidence=IMP] [GO:0048806 "genitalia
development" evidence=IMP] [GO:0060021 "palate development"
evidence=IMP] [GO:0060041 "retina development in camera-type eye"
evidence=IMP] [GO:0001501 "skeletal system development"
evidence=IMP] [GO:0050890 "cognition" evidence=IMP] [GO:0007417
"central nervous system development" evidence=IMP] [GO:0021545
"cranial nerve development" evidence=IMP] [GO:0060123 "regulation
of growth hormone secretion" evidence=IMP] [GO:0003682 "chromatin
binding" evidence=TAS] [GO:0030217 "T cell differentiation"
evidence=IMP] [GO:0060173 "limb development" evidence=IMP]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=NAS] [GO:0060324 "face development" evidence=IMP]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001005
InterPro:IPR001650 InterPro:IPR006576 Pfam:PF00176 Pfam:PF00271
Pfam:PF07533 PROSITE:PS00690 PROSITE:PS50013 PROSITE:PS51194
SMART:SM00298 SMART:SM00490 SMART:SM00592 SMART:SM00717
Pfam:PF00385 GO:GO:0005524 GO:GO:0005634 GO:GO:0006355
GO:GO:0003677 GO:GO:0008015 GO:GO:0003007 GO:GO:0050890
GO:GO:0001701 GO:GO:0040018 GO:GO:0007417 GO:GO:0006351
GO:GO:0003682 GO:GO:0016568 GO:GO:0048806 GO:GO:0042472
GO:GO:0001501 GO:GO:0060041 GO:GO:0007605 GO:GO:0007512
GO:GO:0004386 GO:GO:0035116 GO:GO:0060324 GO:GO:0060021
GO:GO:0060173 GO:GO:0048844 InterPro:IPR016197 SUPFAM:SSF54160
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0030540 GO:GO:0007628 GO:GO:0030217 GO:GO:0048752
InterPro:IPR023780 PROSITE:PS00598 HOVERGEN:HBG081150 CTD:55636
KO:K14437 OrthoDB:EOG4MCWZD EMBL:AC023102 EMBL:AC113143
EMBL:AB037837 EMBL:AK000364 EMBL:AK000368 EMBL:BC014681
EMBL:BC051264 EMBL:BC053890 EMBL:BC068000 EMBL:BC080627
EMBL:BC110818 IPI:IPI00472901 IPI:IPI00794880 RefSeq:NP_060250.2
UniGene:Hs.20395 UniGene:Hs.733236 PDB:2CKC PDB:2V0E PDB:2V0F
PDBsum:2CKC PDBsum:2V0E PDBsum:2V0F ProteinModelPortal:Q9P2D1
SMR:Q9P2D1 DIP:DIP-48685N IntAct:Q9P2D1 STRING:Q9P2D1
PhosphoSite:Q9P2D1 DMDM:148877246 PaxDb:Q9P2D1 PRIDE:Q9P2D1
Ensembl:ENST00000307121 Ensembl:ENST00000423902
Ensembl:ENST00000525508 GeneID:55636 KEGG:hsa:55636 UCSC:uc003xue.3
GeneCards:GC08P061642 H-InvDB:HIX0007533 HGNC:HGNC:20626 MIM:214800
MIM:608765 MIM:608892 MIM:612370 neXtProt:NX_Q9P2D1 Orphanet:138
Orphanet:478 Orphanet:432 PharmGKB:PA134948695 InParanoid:Q9P2D1
OMA:TFGVIFD EvolutionaryTrace:Q9P2D1 GenomeRNAi:55636 NextBio:60291
ArrayExpress:Q9P2D1 Bgee:Q9P2D1 CleanEx:HS_CHD7
Genevestigator:Q9P2D1 GermOnline:ENSG00000171316 GO:GO:0021545
GO:GO:0043584 GO:GO:0060123 Uniprot:Q9P2D1
Length = 2997
Score = 133 (51.9 bits), Expect = 7.5e-14, Sum P(2) = 7.5e-14
Identities = 37/111 (33%), Positives = 57/111 (51%)
Query: 24 EQVDQAKRIISPFMLRRLKKDVLTELPKKTALVIKVPMIPSQAEKYRGLMEDFKKTANPE 83
EQV + + I+ P MLRRLK+DV L K +I+V + Q + YR ++E T +
Sbjct: 1173 EQVQKLQAILKPMMLRRLKEDVEKNLAPKEETIIEVELTNIQKKYYRAILEK-NFTFLSK 1231
Query: 84 GSNRSNEISHMSMFMMLRKMANHPLGLRYYFQENTLREIADCL-VEDPTYK 133
G ++N + ++ M LRK NHP L +E L E + E P ++
Sbjct: 1232 GGGQANVPNLLNTMMELRKCCNHPY-LINGAEEKILEEFKETHNAESPDFQ 1281
Score = 128 (50.1 bits), Expect = 7.5e-14, Sum P(2) = 7.5e-14
Identities = 27/61 (44%), Positives = 40/61 (65%)
Query: 173 LVVESGKLKKLDEILPDLKKNGHRVLIFSQFIFVLDILGHYMDIRGWRHLRLDGATQVSS 232
++ +GKL +D++LP LK GHRVLIFSQ + LDIL Y+ R + + R+DG + +
Sbjct: 1285 MIQAAGKLVLIDKLLPKLKAGGHRVLIFSQMVRCLDILEDYLIQRRYPYERIDGRVRGNL 1344
Query: 233 R 233
R
Sbjct: 1345 R 1345
Score = 39 (18.8 bits), Expect = 0.00011, Sum P(2) = 0.00011
Identities = 13/51 (25%), Positives = 26/51 (50%)
Query: 143 DISWLSDYDIHQLSLKHKTLDCAKYKVPDDLVVESGKLKKLDEILPDLKKN 193
DIS L D + Q K LD ++LV+++ +++K + +K++
Sbjct: 1522 DIS-LDDPNFWQKWAKKAELDIDALNGRNNLVIDTPRVRKQTRLYSAVKED 1571
Score = 39 (18.8 bits), Expect = 0.00045, Sum P(2) = 0.00045
Identities = 8/18 (44%), Positives = 11/18 (61%)
Query: 132 YKGTNP--QYILEDISWL 147
YK N +Y LE ++WL
Sbjct: 962 YKNNNKLREYQLEGVNWL 979
>UNIPROTKB|K7GMM0 [details] [associations]
symbol:SMARCA1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005634 "nucleus" evidence=IEA] [GO:0043044
"ATP-dependent chromatin remodeling" evidence=IEA] [GO:0031491
"nucleosome binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] InterPro:IPR000330
InterPro:IPR001005 InterPro:IPR001650 InterPro:IPR009057
InterPro:IPR015194 InterPro:IPR015195 InterPro:IPR020838
Pfam:PF00176 Pfam:PF00271 Pfam:PF09110 Pfam:PF09111 Pfam:PF13892
PROSITE:PS51194 SMART:SM00490 SMART:SM00717 Gene3D:1.10.10.60
SUPFAM:SSF46689 InterPro:IPR017884 PROSITE:PS51293
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GeneTree:ENSGT00680000100002 SUPFAM:SSF101224 EMBL:CU695129
GeneID:100188905 RefSeq:XP_003360491.1 Ensembl:ENSSSCT00000034062
Uniprot:K7GMM0
Length = 1057
Score = 137 (53.3 bits), Expect = 7.5e-14, Sum P(3) = 7.5e-14
Identities = 31/67 (46%), Positives = 40/67 (59%)
Query: 167 YKVPDDLVVESGKLKKLDEILPDLKKNGHRVLIFSQFIFVLDILGHYMDIRGWRHLRLDG 226
Y + +V SGK+ LD++L LK+ G RVLIFSQ +LDIL Y RG+ + RLDG
Sbjct: 478 YTTDEHIVSNSGKMVVLDKLLAKLKEQGSRVLIFSQMTRLLDILEDYCMWRGYEYCRLDG 537
Query: 227 ATQVSSR 233
T R
Sbjct: 538 QTPHEER 544
Score = 111 (44.1 bits), Expect = 7.5e-14, Sum P(3) = 7.5e-14
Identities = 28/83 (33%), Positives = 46/83 (55%)
Query: 26 VDQAKRIISPFMLRRLKKDVLTELPKKTALVIKVPMIPSQAEKY-RGLMEDFKKTANPEG 84
V++ ++ PF+LRR+K DV LP K + I + + Q E Y + LM+D N G
Sbjct: 387 VERLHAVLKPFLLRRIKTDVEKSLPPKKEIKIYLGLSKMQREWYTKILMKDID-VLNSAG 445
Query: 85 SNRSNEISHMSMFMMLRKMANHP 107
+ +++ +++ M LRK NHP
Sbjct: 446 --KMDKMRLLNILMQLRKCCNHP 466
Score = 39 (18.8 bits), Expect = 7.5e-14, Sum P(3) = 7.5e-14
Identities = 13/37 (35%), Positives = 20/37 (54%)
Query: 3 SDSEDDARYEDKRK-EQAT-FE--VEQVDQAKRIISP 35
S+ E D YE+K K ++A FE ++Q + I P
Sbjct: 78 SEKEMDPEYEEKMKADRAKRFEFLLKQTELFAHFIQP 114
>UNIPROTKB|K7GNV1 [details] [associations]
symbol:SMARCA1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005634 "nucleus" evidence=IEA] [GO:0043044
"ATP-dependent chromatin remodeling" evidence=IEA] [GO:0031491
"nucleosome binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] InterPro:IPR000330
InterPro:IPR001005 InterPro:IPR001650 InterPro:IPR009057
InterPro:IPR015194 InterPro:IPR015195 InterPro:IPR020838
Pfam:PF00176 Pfam:PF00271 Pfam:PF09110 Pfam:PF09111 Pfam:PF13892
PROSITE:PS51194 SMART:SM00490 SMART:SM00717 Gene3D:1.10.10.60
SUPFAM:SSF46689 InterPro:IPR017884 PROSITE:PS51293
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GeneTree:ENSGT00680000100002 SUPFAM:SSF101224 EMBL:CU695129
GeneID:100188905 RefSeq:XP_003360492.1 Ensembl:ENSSSCT00000032734
Uniprot:K7GNV1
Length = 1061
Score = 137 (53.3 bits), Expect = 7.6e-14, Sum P(3) = 7.6e-14
Identities = 31/67 (46%), Positives = 40/67 (59%)
Query: 167 YKVPDDLVVESGKLKKLDEILPDLKKNGHRVLIFSQFIFVLDILGHYMDIRGWRHLRLDG 226
Y + +V SGK+ LD++L LK+ G RVLIFSQ +LDIL Y RG+ + RLDG
Sbjct: 478 YTTDEHIVSNSGKMVVLDKLLAKLKEQGSRVLIFSQMTRLLDILEDYCMWRGYEYCRLDG 537
Query: 227 ATQVSSR 233
T R
Sbjct: 538 QTPHEER 544
Score = 111 (44.1 bits), Expect = 7.6e-14, Sum P(3) = 7.6e-14
Identities = 28/83 (33%), Positives = 46/83 (55%)
Query: 26 VDQAKRIISPFMLRRLKKDVLTELPKKTALVIKVPMIPSQAEKY-RGLMEDFKKTANPEG 84
V++ ++ PF+LRR+K DV LP K + I + + Q E Y + LM+D N G
Sbjct: 387 VERLHAVLKPFLLRRIKTDVEKSLPPKKEIKIYLGLSKMQREWYTKILMKDID-VLNSAG 445
Query: 85 SNRSNEISHMSMFMMLRKMANHP 107
+ +++ +++ M LRK NHP
Sbjct: 446 --KMDKMRLLNILMQLRKCCNHP 466
Score = 39 (18.8 bits), Expect = 7.6e-14, Sum P(3) = 7.6e-14
Identities = 13/37 (35%), Positives = 20/37 (54%)
Query: 3 SDSEDDARYEDKRK-EQAT-FE--VEQVDQAKRIISP 35
S+ E D YE+K K ++A FE ++Q + I P
Sbjct: 78 SEKEMDPEYEEKMKADRAKRFEFLLKQTELFAHFIQP 114
>UNIPROTKB|Q9HBD4 [details] [associations]
symbol:SMARCA4 "SMARCA4 isoform 2" species:9606 "Homo
sapiens" [GO:0004386 "helicase activity" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0000122 "negative regulation of
transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0000792 "heterochromatin" evidence=IEA] [GO:0000902 "cell
morphogenesis" evidence=IEA] [GO:0000977 "RNA polymerase II
regulatory region sequence-specific DNA binding" evidence=IEA]
[GO:0001570 "vasculogenesis" evidence=IEA] [GO:0001832 "blastocyst
growth" evidence=IEA] [GO:0001835 "blastocyst hatching"
evidence=IEA] [GO:0001889 "liver development" evidence=IEA]
[GO:0003682 "chromatin binding" evidence=IEA] [GO:0005719 "nuclear
euchromatin" evidence=IEA] [GO:0005726 "perichromatin fibrils"
evidence=IEA] [GO:0006338 "chromatin remodeling" evidence=IEA]
[GO:0006346 "methylation-dependent chromatin silencing"
evidence=IEA] [GO:0007403 "glial cell fate determination"
evidence=IEA] [GO:0008134 "transcription factor binding"
evidence=IEA] [GO:0010424 "DNA methylation on cytosine within a CG
sequence" evidence=IEA] [GO:0019827 "stem cell maintenance"
evidence=IEA] [GO:0030198 "extracellular matrix organization"
evidence=IEA] [GO:0030216 "keratinocyte differentiation"
evidence=IEA] [GO:0030900 "forebrain development" evidence=IEA]
[GO:0030902 "hindbrain development" evidence=IEA] [GO:0035116
"embryonic hindlimb morphogenesis" evidence=IEA] [GO:0035887
"aortic smooth muscle cell differentiation" evidence=IEA]
[GO:0043388 "positive regulation of DNA binding" evidence=IEA]
[GO:0043966 "histone H3 acetylation" evidence=IEA] [GO:0045944
"positive regulation of transcription from RNA polymerase II
promoter" evidence=IEA] [GO:0048562 "embryonic organ morphogenesis"
evidence=IEA] [GO:0048730 "epidermis morphogenesis" evidence=IEA]
[GO:0060318 "definitive erythrocyte differentiation" evidence=IEA]
[GO:0060347 "heart trabecula formation" evidence=IEA] [GO:0071564
"npBAF complex" evidence=IEA] [GO:0071565 "nBAF complex"
evidence=IEA] InterPro:IPR000330 InterPro:IPR001487
InterPro:IPR001650 InterPro:IPR006576 InterPro:IPR014978
Pfam:PF00176 Pfam:PF00271 Pfam:PF00439 Pfam:PF07533 Pfam:PF08880
PRINTS:PR00503 PROSITE:PS50014 PROSITE:PS51194 SMART:SM00297
SMART:SM00490 SMART:SM00592 SMART:SM00951 GO:GO:0005524
GO:GO:0030216 GO:GO:0045944 GO:GO:0030198 GO:GO:0030900
GO:GO:0001889 GO:GO:0003682 GO:GO:0006338 GO:GO:0000122
GO:GO:0071564 GO:GO:0071565 GO:GO:0000902 GO:GO:0004386
GO:GO:0001570 GO:GO:0035116 GO:GO:0005719 GO:GO:0030902
EMBL:CH471106 GO:GO:0048730 GO:GO:0000977 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0019827 Gene3D:1.20.920.10
SUPFAM:SSF47370 PROSITE:PS00633 InterPro:IPR018359 GO:GO:0000792
GO:GO:0060347 GO:GO:0043966 GO:GO:0043388 KO:K11647
InterPro:IPR013999 InterPro:IPR014012 InterPro:IPR006562
Pfam:PF07529 SMART:SM00573 PROSITE:PS51204 EMBL:AC011442
GO:GO:0001835 GO:GO:0007403 GO:GO:0006346 GO:GO:0010424
GO:GO:0060318 GO:GO:0048562 GO:GO:0001832 EMBL:AC011485
GO:GO:0005726 HOGENOM:HOG000172363 HOVERGEN:HBG056636 GO:GO:0035887
CTD:6597 EMBL:AF254822 EMBL:AC006127 UniGene:Hs.327527 GeneID:6597
KEGG:hsa:6597 HGNC:HGNC:11100 PharmGKB:PA35950 ChiTaRS:SMARCA4
GenomeRNAi:6597 NextBio:25661 IPI:IPI00900269 RefSeq:NP_001122321.1
SMR:Q9HBD4 STRING:Q9HBD4 Ensembl:ENST00000358026 UCSC:uc010dxo.3
Uniprot:Q9HBD4
Length = 1679
Score = 136 (52.9 bits), Expect = 7.7e-14, Sum P(2) = 7.7e-14
Identities = 27/62 (43%), Positives = 38/62 (61%)
Query: 172 DLVVESGKLKKLDEILPDLKKNGHRVLIFSQFIFVLDILGHYMDIRGWRHLRLDGATQVS 231
DL SGK + LD ILP L+ H+VL+F Q ++ I+ Y RG+++LRLDG T+
Sbjct: 1074 DLYRASGKFELLDRILPKLRATNHKVLLFCQMTSLMTIMEDYFAYRGFKYLRLDGTTKAE 1133
Query: 232 SR 233
R
Sbjct: 1134 DR 1135
Score = 119 (46.9 bits), Expect = 7.7e-14, Sum P(2) = 7.7e-14
Identities = 33/90 (36%), Positives = 47/90 (52%)
Query: 31 RIISPFMLRRLKKDVLTELPKKTALVIKVPMIPSQAEKYRGLMEDFKKTANPEGSNRSNE 90
+++ PF+LRRLKK+V +LP+K VIK M Q YR + K +GS + +
Sbjct: 970 KVLRPFLLRRLKKEVEAQLPEKVEYVIKCDMSALQRVLYRHMQA--KGVLLTDGSEKDKK 1027
Query: 91 -----ISHMSMFMMLRKMANHPLGLRYYFQ 115
+ M+ M LRK+ NHP Y FQ
Sbjct: 1028 GKGGTKTLMNTIMQLRKICNHP----YMFQ 1053
Score = 43 (20.2 bits), Expect = 0.00063, Sum P(2) = 0.00063
Identities = 10/24 (41%), Positives = 16/24 (66%)
Query: 156 SLKHKTLDCAKYKVP-DDLVVESG 178
S++ K L AKYK+ D V+++G
Sbjct: 1209 SVEEKILAAAKYKLNVDQKVIQAG 1232
>UNIPROTKB|F1RTI9 [details] [associations]
symbol:SMARCA1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0045893 "positive regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0036310 "annealing helicase
activity" evidence=IEA] [GO:0030182 "neuron differentiation"
evidence=IEA] [GO:0016589 "NURF complex" evidence=IEA] [GO:0008094
"DNA-dependent ATPase activity" evidence=IEA] [GO:0007420 "brain
development" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0043044 "ATP-dependent chromatin
remodeling" evidence=IEA] [GO:0031491 "nucleosome binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] InterPro:IPR000330 InterPro:IPR001005
InterPro:IPR001650 InterPro:IPR009057 InterPro:IPR015194
InterPro:IPR015195 InterPro:IPR020838 Pfam:PF00176 Pfam:PF00271
Pfam:PF09110 Pfam:PF09111 Pfam:PF13892 PROSITE:PS51194
SMART:SM00490 SMART:SM00717 GO:GO:0005524 GO:GO:0045893
GO:GO:0007420 GO:GO:0030182 GO:GO:0003677 GO:GO:0006351
Gene3D:1.10.10.60 SUPFAM:SSF46689 InterPro:IPR017884
PROSITE:PS51293 GO:GO:0004386 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0031491 GO:GO:0043044 GO:GO:0016589
GO:GO:0008094 GeneTree:ENSGT00680000100002 SUPFAM:SSF101224
OMA:PMSQKRK EMBL:CU695129 Ensembl:ENSSSCT00000013830 Uniprot:F1RTI9
Length = 1073
Score = 137 (53.3 bits), Expect = 7.9e-14, Sum P(3) = 7.9e-14
Identities = 31/67 (46%), Positives = 40/67 (59%)
Query: 167 YKVPDDLVVESGKLKKLDEILPDLKKNGHRVLIFSQFIFVLDILGHYMDIRGWRHLRLDG 226
Y + +V SGK+ LD++L LK+ G RVLIFSQ +LDIL Y RG+ + RLDG
Sbjct: 478 YTTDEHIVSNSGKMVVLDKLLAKLKEQGSRVLIFSQMTRLLDILEDYCMWRGYEYCRLDG 537
Query: 227 ATQVSSR 233
T R
Sbjct: 538 QTPHEER 544
Score = 111 (44.1 bits), Expect = 7.9e-14, Sum P(3) = 7.9e-14
Identities = 28/83 (33%), Positives = 46/83 (55%)
Query: 26 VDQAKRIISPFMLRRLKKDVLTELPKKTALVIKVPMIPSQAEKY-RGLMEDFKKTANPEG 84
V++ ++ PF+LRR+K DV LP K + I + + Q E Y + LM+D N G
Sbjct: 387 VERLHAVLKPFLLRRIKTDVEKSLPPKKEIKIYLGLSKMQREWYTKILMKDID-VLNSAG 445
Query: 85 SNRSNEISHMSMFMMLRKMANHP 107
+ +++ +++ M LRK NHP
Sbjct: 446 --KMDKMRLLNILMQLRKCCNHP 466
Score = 39 (18.8 bits), Expect = 7.9e-14, Sum P(3) = 7.9e-14
Identities = 13/37 (35%), Positives = 20/37 (54%)
Query: 3 SDSEDDARYEDKRK-EQAT-FE--VEQVDQAKRIISP 35
S+ E D YE+K K ++A FE ++Q + I P
Sbjct: 78 SEKEMDPEYEEKMKADRAKRFEFLLKQTELFAHFIQP 114
>UNIPROTKB|K7GLQ2 [details] [associations]
symbol:SMARCA1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005634 "nucleus" evidence=IEA] [GO:0043044
"ATP-dependent chromatin remodeling" evidence=IEA] [GO:0031491
"nucleosome binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] InterPro:IPR000330
InterPro:IPR001005 InterPro:IPR001650 InterPro:IPR009057
InterPro:IPR015194 InterPro:IPR015195 InterPro:IPR020838
Pfam:PF00176 Pfam:PF00271 Pfam:PF09110 Pfam:PF09111 Pfam:PF13892
PROSITE:PS51194 SMART:SM00490 SMART:SM00717 Gene3D:1.10.10.60
SUPFAM:SSF46689 InterPro:IPR017884 PROSITE:PS51293
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GeneTree:ENSGT00680000100002 SUPFAM:SSF101224 EMBL:CU695129
RefSeq:XP_003135410.1 Ensembl:ENSSSCT00000033549 GeneID:100188905
Uniprot:K7GLQ2
Length = 1073
Score = 137 (53.3 bits), Expect = 7.9e-14, Sum P(3) = 7.9e-14
Identities = 31/67 (46%), Positives = 40/67 (59%)
Query: 167 YKVPDDLVVESGKLKKLDEILPDLKKNGHRVLIFSQFIFVLDILGHYMDIRGWRHLRLDG 226
Y + +V SGK+ LD++L LK+ G RVLIFSQ +LDIL Y RG+ + RLDG
Sbjct: 478 YTTDEHIVSNSGKMVVLDKLLAKLKEQGSRVLIFSQMTRLLDILEDYCMWRGYEYCRLDG 537
Query: 227 ATQVSSR 233
T R
Sbjct: 538 QTPHEER 544
Score = 111 (44.1 bits), Expect = 7.9e-14, Sum P(3) = 7.9e-14
Identities = 28/83 (33%), Positives = 46/83 (55%)
Query: 26 VDQAKRIISPFMLRRLKKDVLTELPKKTALVIKVPMIPSQAEKY-RGLMEDFKKTANPEG 84
V++ ++ PF+LRR+K DV LP K + I + + Q E Y + LM+D N G
Sbjct: 387 VERLHAVLKPFLLRRIKTDVEKSLPPKKEIKIYLGLSKMQREWYTKILMKDID-VLNSAG 445
Query: 85 SNRSNEISHMSMFMMLRKMANHP 107
+ +++ +++ M LRK NHP
Sbjct: 446 --KMDKMRLLNILMQLRKCCNHP 466
Score = 39 (18.8 bits), Expect = 7.9e-14, Sum P(3) = 7.9e-14
Identities = 13/37 (35%), Positives = 20/37 (54%)
Query: 3 SDSEDDARYEDKRK-EQAT-FE--VEQVDQAKRIISP 35
S+ E D YE+K K ++A FE ++Q + I P
Sbjct: 78 SEKEMDPEYEEKMKADRAKRFEFLLKQTELFAHFIQP 114
>UNIPROTKB|F1N166 [details] [associations]
symbol:SMARCA1 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0045893 "positive regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0036310 "annealing helicase
activity" evidence=IEA] [GO:0030182 "neuron differentiation"
evidence=IEA] [GO:0016589 "NURF complex" evidence=IEA] [GO:0008094
"DNA-dependent ATPase activity" evidence=IEA] [GO:0007420 "brain
development" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0043044 "ATP-dependent chromatin
remodeling" evidence=IEA] [GO:0031491 "nucleosome binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] InterPro:IPR000330 InterPro:IPR001005
InterPro:IPR001650 InterPro:IPR009057 InterPro:IPR015194
InterPro:IPR015195 InterPro:IPR020838 Pfam:PF00176 Pfam:PF00271
Pfam:PF09110 Pfam:PF09111 Pfam:PF13892 PROSITE:PS51194
SMART:SM00490 SMART:SM00717 GO:GO:0005524 GO:GO:0045893
GO:GO:0007420 GO:GO:0030182 GO:GO:0003677 GO:GO:0006351
Gene3D:1.10.10.60 SUPFAM:SSF46689 InterPro:IPR017884
PROSITE:PS51293 GO:GO:0004386 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0031491 GO:GO:0043044 GO:GO:0016589
GO:GO:0008094 GeneTree:ENSGT00680000100002 SUPFAM:SSF101224
OMA:PMSQKRK EMBL:DAAA02067438 EMBL:DAAA02067437 IPI:IPI01018574
Ensembl:ENSBTAT00000002973 Uniprot:F1N166
Length = 1078
Score = 137 (53.3 bits), Expect = 8.0e-14, Sum P(3) = 8.0e-14
Identities = 31/67 (46%), Positives = 40/67 (59%)
Query: 167 YKVPDDLVVESGKLKKLDEILPDLKKNGHRVLIFSQFIFVLDILGHYMDIRGWRHLRLDG 226
Y + +V SGK+ LD++L LK+ G RVLIFSQ +LDIL Y RG+ + RLDG
Sbjct: 478 YTTDEHIVSNSGKMVVLDKLLAKLKEQGSRVLIFSQMTRLLDILEDYCMWRGYEYCRLDG 537
Query: 227 ATQVSSR 233
T R
Sbjct: 538 QTPHEER 544
Score = 111 (44.1 bits), Expect = 8.0e-14, Sum P(3) = 8.0e-14
Identities = 28/83 (33%), Positives = 46/83 (55%)
Query: 26 VDQAKRIISPFMLRRLKKDVLTELPKKTALVIKVPMIPSQAEKY-RGLMEDFKKTANPEG 84
V++ ++ PF+LRR+K DV LP K + I + + Q E Y + LM+D N G
Sbjct: 387 VERLHTVLKPFLLRRIKTDVEKSLPPKKEIKIYLGLSKMQREWYTKILMKDID-VLNSAG 445
Query: 85 SNRSNEISHMSMFMMLRKMANHP 107
+ +++ +++ M LRK NHP
Sbjct: 446 --KMDKMRLLNILMQLRKCCNHP 466
Score = 39 (18.8 bits), Expect = 8.0e-14, Sum P(3) = 8.0e-14
Identities = 13/37 (35%), Positives = 20/37 (54%)
Query: 3 SDSEDDARYEDKRK-EQAT-FE--VEQVDQAKRIISP 35
S+ E D YE+K K ++A FE ++Q + I P
Sbjct: 78 SEKEMDPEYEEKMKADRAKRFEFLLKQTELFAHFIQP 114
>ASPGD|ASPL0000042729 [details] [associations]
symbol:AN2278 species:162425 "Emericella nidulans"
[GO:0006366 "transcription from RNA polymerase II promoter"
evidence=IEA] [GO:0016586 "RSC complex" evidence=IEA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001487 InterPro:IPR001650
InterPro:IPR014978 Pfam:PF00176 Pfam:PF00271 Pfam:PF00439
Pfam:PF08880 PRINTS:PR00503 PROSITE:PS50014 PROSITE:PS51194
SMART:SM00297 SMART:SM00490 SMART:SM00951 GO:GO:0005524
GO:GO:0005634 GO:GO:0006355 GO:GO:0003677 EMBL:BN001307
GO:GO:0004386 EMBL:AACD01000038 eggNOG:COG0553 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 Gene3D:1.20.920.10 SUPFAM:SSF47370
InterPro:IPR014012 InterPro:IPR006562 Pfam:PF07529 PROSITE:PS51204
HOGENOM:HOG000172362 KO:K11786 OrthoDB:EOG4D565R RefSeq:XP_659882.1
ProteinModelPortal:Q5BB02 STRING:Q5BB02
EnsemblFungi:CADANIAT00008970 GeneID:2875521 KEGG:ani:AN2278.2
OMA:GSDHSSP Uniprot:Q5BB02
Length = 1407
Score = 137 (53.3 bits), Expect = 8.0e-14, Sum P(2) = 8.0e-14
Identities = 27/64 (42%), Positives = 43/64 (67%)
Query: 171 DDLVVES-GKLKKLDEILPDLKKNGHRVLIFSQFIFVLDILGHYMDIRGWRHLRLDGATQ 229
+DL+ + GK + LD ILP K GHRVL+F Q +++I+ ++ +RG ++LRLDG+T+
Sbjct: 848 NDLIWRTAGKFELLDRILPKFKATGHRVLMFFQMTQIMNIMEDFLRLRGMKYLRLDGSTK 907
Query: 230 VSSR 233
R
Sbjct: 908 SDDR 911
Score = 116 (45.9 bits), Expect = 8.0e-14, Sum P(2) = 8.0e-14
Identities = 28/77 (36%), Positives = 39/77 (50%)
Query: 31 RIISPFMLRRLKKDVLTELPKKTALVIKVPMIPSQAEKYRGLMEDFKKTANPEGSNRSNE 90
+++ PF+LRRLKKDV +LP K VIK QA+ + L K + +
Sbjct: 755 KVLRPFLLRRLKKDVEKDLPDKQERVIKCRFSALQAKLNKQLATHNKMVVSDGKGGKVGM 814
Query: 91 ISHMSMFMMLRKMANHP 107
+M M LRK+ NHP
Sbjct: 815 RGLSNMLMQLRKLCNHP 831
>SGD|S000005831 [details] [associations]
symbol:ISW2 "ATP-dependent DNA translocase involved in
chromatin remodeling" species:4932 "Saccharomyces cerevisiae"
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA;IDA;IPI] [GO:0006338 "chromatin remodeling"
evidence=IEA;IGI;IMP;IPI] [GO:0016818 "hydrolase activity, acting
on acid anhydrides, in phosphorus-containing anhydrides"
evidence=IEA] [GO:0031491 "nucleosome binding" evidence=IEA]
[GO:0003682 "chromatin binding" evidence=IEA] [GO:0060195 "negative
regulation of antisense RNA transcription" evidence=IGI]
[GO:0016584 "nucleosome positioning" evidence=IDA] [GO:0008623
"CHRAC" evidence=ISS;IPI] [GO:0046020 "negative regulation of
transcription from RNA polymerase II promoter by pheromones"
evidence=IMP] [GO:0006348 "chromatin silencing at telomere"
evidence=IMP] [GO:0043044 "ATP-dependent chromatin remodeling"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0016568 "chromatin modification" evidence=IEA] [GO:0000183
"chromatin silencing at rDNA" evidence=IMP] [GO:0015616 "DNA
translocase activity" evidence=IDA] [GO:0003697 "single-stranded
DNA binding" evidence=IDA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0016787 "hydrolase activity" evidence=IEA] [GO:0006369
"termination of RNA polymerase II transcription" evidence=IGI]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000330
InterPro:IPR001005 InterPro:IPR001650 InterPro:IPR009057
InterPro:IPR015194 InterPro:IPR015195 Pfam:PF00176 Pfam:PF00271
Pfam:PF09110 Pfam:PF09111 PROSITE:PS51194 SMART:SM00490
SMART:SM00717 SGD:S000005831 GO:GO:0005524 EMBL:BK006948
Gene3D:1.10.10.60 SUPFAM:SSF46689 GO:GO:0006338 GO:GO:0003697
InterPro:IPR017884 PROSITE:PS51293 GO:GO:0000183 GO:GO:0006348
GO:GO:0004386 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0031491 GO:GO:0043044 GO:GO:0016584
GO:GO:0008623 GO:GO:0006369 GO:GO:0046020 GO:GO:0060195
GO:GO:0015616 GeneTree:ENSGT00680000100002 HOGENOM:HOG000192862
SUPFAM:SSF101224 OrthoDB:EOG48SM27 EMBL:Z75212 PIR:S67208
RefSeq:NP_014948.1 ProteinModelPortal:Q08773 SMR:Q08773
DIP:DIP-6603N IntAct:Q08773 MINT:MINT-469536 STRING:Q08773
PaxDb:Q08773 PeptideAtlas:Q08773 PRIDE:Q08773 EnsemblFungi:YOR304W
GeneID:854480 KEGG:sce:YOR304W CYGD:YOR304w OMA:NEQSALS
NextBio:976792 Genevestigator:Q08773 GermOnline:YOR304W
Uniprot:Q08773
Length = 1120
Score = 131 (51.2 bits), Expect = 8.4e-14, Sum P(2) = 8.4e-14
Identities = 29/67 (43%), Positives = 40/67 (59%)
Query: 167 YKVPDDLVVESGKLKKLDEILPDLKKNGHRVLIFSQFIFVLDILGHYMDIRGWRHLRLDG 226
Y + L+ SGK+ LD++L LK+ G RVLIFSQ +LDIL Y R + + R+DG
Sbjct: 479 YTTDEHLIFNSGKMIILDKLLKRLKEKGSRVLIFSQMSRLLDILEDYCYFRDFEYCRIDG 538
Query: 227 ATQVSSR 233
+T R
Sbjct: 539 STSHEER 545
Score = 121 (47.7 bits), Expect = 8.4e-14, Sum P(2) = 8.4e-14
Identities = 34/105 (32%), Positives = 50/105 (47%)
Query: 4 DSE-DDARYEDKRKEQATFEVEQVDQAKRIISPFMLRRLKKDVLTELPKKTALVIKVPMI 62
DSE D +E EQ E+ + Q +++PF+LRR+K DV L K + V M
Sbjct: 365 DSELFDEWFEQNNSEQDQ-EIV-IQQLHSVLNPFLLRRVKADVEKSLLPKIETNVYVGMT 422
Query: 63 PSQAEKYRGLMEDFKKTANPEGSNRSNEISHMSMFMMLRKMANHP 107
Q + Y+ L+E N R + +++ M LRK NHP
Sbjct: 423 DMQIQWYKSLLEKDIDAVNGAVGKREGKTRLLNIVMQLRKCCNHP 467
>UNIPROTKB|F1RT88 [details] [associations]
symbol:CHD7 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0060324 "face development" evidence=IEA] [GO:0060123
"regulation of growth hormone secretion" evidence=IEA] [GO:0060041
"retina development in camera-type eye" evidence=IEA] [GO:0060021
"palate development" evidence=IEA] [GO:0050890 "cognition"
evidence=IEA] [GO:0048844 "artery morphogenesis" evidence=IEA]
[GO:0048752 "semicircular canal morphogenesis" evidence=IEA]
[GO:0043584 "nose development" evidence=IEA] [GO:0040018 "positive
regulation of multicellular organism growth" evidence=IEA]
[GO:0035116 "embryonic hindlimb morphogenesis" evidence=IEA]
[GO:0030540 "female genitalia development" evidence=IEA]
[GO:0030217 "T cell differentiation" evidence=IEA] [GO:0021545
"cranial nerve development" evidence=IEA] [GO:0008015 "blood
circulation" evidence=IEA] [GO:0007628 "adult walking behavior"
evidence=IEA] [GO:0007605 "sensory perception of sound"
evidence=IEA] [GO:0007512 "adult heart development" evidence=IEA]
[GO:0007417 "central nervous system development" evidence=IEA]
[GO:0003007 "heart morphogenesis" evidence=IEA] [GO:0001701 "in
utero embryonic development" evidence=IEA] [GO:0001501 "skeletal
system development" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0003682 "chromatin binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001005
InterPro:IPR001650 InterPro:IPR006576 Pfam:PF00176 Pfam:PF00271
Pfam:PF07533 PROSITE:PS50013 PROSITE:PS51194 SMART:SM00298
SMART:SM00490 SMART:SM00592 SMART:SM00717 Pfam:PF00385
GO:GO:0005524 GO:GO:0005634 GO:GO:0003677 GO:GO:0008015
GO:GO:0003007 GO:GO:0050890 GO:GO:0001701 GO:GO:0040018
GO:GO:0007417 GO:GO:0003682 GO:GO:0001501 GO:GO:0060041
GO:GO:0007605 GO:GO:0007512 GO:GO:0004386 GO:GO:0035116
GO:GO:0060324 GO:GO:0060021 GO:GO:0048844 InterPro:IPR016197
SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0030540 GO:GO:0007628 GO:GO:0030217 GO:GO:0048752
InterPro:IPR023780 OMA:TFGVIFD GO:GO:0021545 GO:GO:0043584
GO:GO:0060123 GeneTree:ENSGT00560000077077 EMBL:CU179734
Ensembl:ENSSSCT00000006828 Uniprot:F1RT88
Length = 2991
Score = 132 (51.5 bits), Expect = 1.0e-13, Sum P(2) = 1.0e-13
Identities = 38/119 (31%), Positives = 60/119 (50%)
Query: 24 EQVDQAKRIISPFMLRRLKKDVLTELPKKTALVIKVPMIPSQAEKYRGLMEDFKKTANPE 83
EQV + + I+ P MLRRLK+DV L K +I+V + Q + YR ++E T +
Sbjct: 1166 EQVQKLQAILKPMMLRRLKEDVEKNLAPKEETIIEVELTNIQKKYYRAILEK-NFTFLSK 1224
Query: 84 GSNRSNEISHMSMFMMLRKMANHPLGLRYYFQENTLREIADCLVEDPTYKGTNPQYILE 142
G ++N + ++ M LRK NHP L +E L E + T+ +P + L+
Sbjct: 1225 GGGQANVPNLLNTMMELRKCCNHPY-LINGAEEKILEEFKE------THNADSPDFQLQ 1276
Score = 128 (50.1 bits), Expect = 1.0e-13, Sum P(2) = 1.0e-13
Identities = 27/61 (44%), Positives = 40/61 (65%)
Query: 173 LVVESGKLKKLDEILPDLKKNGHRVLIFSQFIFVLDILGHYMDIRGWRHLRLDGATQVSS 232
++ +GKL +D++LP LK GHRVLIFSQ + LDIL Y+ R + + R+DG + +
Sbjct: 1278 MIQAAGKLVLIDKLLPKLKAGGHRVLIFSQMVRCLDILEDYLIQRRYPYERIDGRVRGNL 1337
Query: 233 R 233
R
Sbjct: 1338 R 1338
>UNIPROTKB|F1PWD8 [details] [associations]
symbol:CHD7 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005634 "nucleus" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0003682 "chromatin binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] InterPro:IPR000330
InterPro:IPR000953 InterPro:IPR001005 InterPro:IPR001650
InterPro:IPR006576 Pfam:PF00176 Pfam:PF00271 Pfam:PF07533
PROSITE:PS50013 PROSITE:PS51194 SMART:SM00298 SMART:SM00490
SMART:SM00592 SMART:SM00717 Pfam:PF00385 GO:GO:0005524
GO:GO:0005634 GO:GO:0003677 GO:GO:0003682 GO:GO:0004386
InterPro:IPR016197 SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 InterPro:IPR023780 OMA:TFGVIFD EMBL:AAEX03015818
EMBL:AAEX03015819 EMBL:AAEX03015820 Ensembl:ENSCAFT00000011497
GeneTree:ENSGT00700000105087 Uniprot:F1PWD8
Length = 2994
Score = 132 (51.5 bits), Expect = 1.0e-13, Sum P(2) = 1.0e-13
Identities = 38/119 (31%), Positives = 60/119 (50%)
Query: 24 EQVDQAKRIISPFMLRRLKKDVLTELPKKTALVIKVPMIPSQAEKYRGLMEDFKKTANPE 83
EQV + + I+ P MLRRLK+DV L K +I+V + Q + YR ++E T +
Sbjct: 1172 EQVQKLQAILKPMMLRRLKEDVEKNLAPKEETIIEVELTNIQKKYYRAILEK-NFTFLSK 1230
Query: 84 GSNRSNEISHMSMFMMLRKMANHPLGLRYYFQENTLREIADCLVEDPTYKGTNPQYILE 142
G ++N + ++ M LRK NHP L +E L E + T+ +P + L+
Sbjct: 1231 GGGQANVPNLLNTMMELRKCCNHPY-LINGAEEKILEEFKE------THNADSPDFQLQ 1282
Score = 128 (50.1 bits), Expect = 1.0e-13, Sum P(2) = 1.0e-13
Identities = 27/61 (44%), Positives = 40/61 (65%)
Query: 173 LVVESGKLKKLDEILPDLKKNGHRVLIFSQFIFVLDILGHYMDIRGWRHLRLDGATQVSS 232
++ +GKL +D++LP LK GHRVLIFSQ + LDIL Y+ R + + R+DG + +
Sbjct: 1284 MIQAAGKLVLIDKLLPKLKAGGHRVLIFSQMVRCLDILEDYLIQRRYPYERIDGRVRGNL 1343
Query: 233 R 233
R
Sbjct: 1344 R 1344
Score = 39 (18.8 bits), Expect = 0.00015, Sum P(2) = 0.00015
Identities = 13/51 (25%), Positives = 26/51 (50%)
Query: 143 DISWLSDYDIHQLSLKHKTLDCAKYKVPDDLVVESGKLKKLDEILPDLKKN 193
DIS L D + Q K LD ++LV+++ +++K + +K++
Sbjct: 1521 DIS-LDDPNFWQKWAKKAELDIDALNGRNNLVIDTPRVRKQTRLYSAVKED 1570
Score = 39 (18.8 bits), Expect = 0.00083, Sum P(3) = 0.00083
Identities = 8/18 (44%), Positives = 11/18 (61%)
Query: 132 YKGTNP--QYILEDISWL 147
YK N +Y LE ++WL
Sbjct: 961 YKNNNKLREYQLEGVNWL 978
Score = 37 (18.1 bits), Expect = 0.00083, Sum P(3) = 0.00083
Identities = 18/68 (26%), Positives = 26/68 (38%)
Query: 40 RLKKDVLTELPKKTALVIKVPMIPSQAEKYRGLMEDFKKTANPE--GSNRSNEISHMSMF 97
++KKD K K P P + + E KTA P+ S +S+ S
Sbjct: 647 KVKKDPKEPKEPKEKKEPKEPKTPKAPKIPKEPKEKKAKTATPKPKSSKKSSNKKPDSEA 706
Query: 98 MMLRKMAN 105
L+K N
Sbjct: 707 SALKKKVN 714
Score = 36 (17.7 bits), Expect = 0.00030, Sum P(2) = 0.00030
Identities = 13/53 (24%), Positives = 22/53 (41%)
Query: 128 EDPTYKGTNPQYILEDISWLSDYDIHQLSLKHKTLDCAKYKVPDDLVVESGKL 180
EDP YK T + ++I ++ K + +D P + E G+L
Sbjct: 1852 EDPEYKPTRTPF-KDEIDEFANSPPED---KEEAMDIRTTGKPSESTAELGQL 1900
>UNIPROTKB|F1NSG3 [details] [associations]
symbol:CHD7 "Chromodomain-helicase-DNA-binding protein 7"
species:9031 "Gallus gallus" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0003682 "chromatin binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0008015 "blood circulation" evidence=IEA] [GO:0021545 "cranial
nerve development" evidence=IEA] [GO:0030217 "T cell
differentiation" evidence=IEA] [GO:0030540 "female genitalia
development" evidence=IEA] [GO:0035116 "embryonic hindlimb
morphogenesis" evidence=IEA] [GO:0040018 "positive regulation of
multicellular organism growth" evidence=IEA] [GO:0043584 "nose
development" evidence=IEA] [GO:0048752 "semicircular canal
morphogenesis" evidence=IEA] [GO:0048844 "artery morphogenesis"
evidence=IEA] [GO:0050890 "cognition" evidence=IEA] [GO:0060021
"palate development" evidence=IEA] [GO:0060041 "retina development
in camera-type eye" evidence=IEA] [GO:0060123 "regulation of growth
hormone secretion" evidence=IEA] [GO:0060324 "face development"
evidence=IEA] [GO:0001501 "skeletal system development"
evidence=IEA] [GO:0001701 "in utero embryonic development"
evidence=IEA] [GO:0003007 "heart morphogenesis" evidence=IEA]
[GO:0007417 "central nervous system development" evidence=IEA]
[GO:0007512 "adult heart development" evidence=IEA] [GO:0007605
"sensory perception of sound" evidence=IEA] [GO:0007628 "adult
walking behavior" evidence=IEA] InterPro:IPR000330
InterPro:IPR000953 InterPro:IPR001005 InterPro:IPR001650
InterPro:IPR006576 Pfam:PF00176 Pfam:PF00271 Pfam:PF07533
PROSITE:PS50013 PROSITE:PS51194 SMART:SM00298 SMART:SM00490
SMART:SM00592 SMART:SM00717 Pfam:PF00385 GO:GO:0005524
GO:GO:0005634 GO:GO:0003677 GO:GO:0040018 GO:GO:0003682
GO:GO:0004386 InterPro:IPR016197 SUPFAM:SSF54160 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 InterPro:IPR023780 IPI:IPI00590082
OMA:TFGVIFD GO:GO:0060123 GeneTree:ENSGT00560000077077
EMBL:AADN02022009 EMBL:AADN02022010 Ensembl:ENSGALT00000024950
ArrayExpress:F1NSG3 Uniprot:F1NSG3
Length = 2248
Score = 129 (50.5 bits), Expect = 1.3e-13, Sum P(2) = 1.3e-13
Identities = 39/120 (32%), Positives = 61/120 (50%)
Query: 24 EQVDQAKRIISPFMLRRLKKDVLTELPKKTALVIKVPMIPSQAEKYRGLMEDFKKTAN-P 82
EQV + + I+ P MLRRLK+DV L K +I+V + Q + YR ++E K A
Sbjct: 411 EQVQKLQAILKPMMLRRLKEDVEKNLAPKEETIIEVELTNIQKKYYRAILE--KNFAFLS 468
Query: 83 EGSNRSNEISHMSMFMMLRKMANHPLGLRYYFQENTLREIADCLVEDPTYKGTNPQYILE 142
+G ++N + ++ M LRK NHP L +E L E + T+ +P + L+
Sbjct: 469 KGGGQANVPNLLNTMMELRKCCNHPY-LINGAEEKILEEFKE------THNADSPDFQLQ 521
Score = 128 (50.1 bits), Expect = 1.3e-13, Sum P(2) = 1.3e-13
Identities = 27/61 (44%), Positives = 40/61 (65%)
Query: 173 LVVESGKLKKLDEILPDLKKNGHRVLIFSQFIFVLDILGHYMDIRGWRHLRLDGATQVSS 232
++ +GKL +D++LP LK GHRVLIFSQ + LDIL Y+ R + + R+DG + +
Sbjct: 523 MIQAAGKLVLIDKLLPKLKAGGHRVLIFSQMVRCLDILEDYLIQRRYPYERIDGRVRGNL 582
Query: 233 R 233
R
Sbjct: 583 R 583
Score = 39 (18.8 bits), Expect = 0.00019, Sum P(2) = 0.00019
Identities = 13/51 (25%), Positives = 26/51 (50%)
Query: 143 DISWLSDYDIHQLSLKHKTLDCAKYKVPDDLVVESGKLKKLDEILPDLKKN 193
DIS L D + Q K LD ++LV+++ +++K + +K++
Sbjct: 760 DIS-LDDPNFWQKWAKKAELDIDALNGRNNLVIDTPRVRKQTRLYSAVKED 809
Score = 39 (18.8 bits), Expect = 0.00025, Sum P(2) = 0.00025
Identities = 8/18 (44%), Positives = 11/18 (61%)
Query: 132 YKGTNP--QYILEDISWL 147
YK N +Y LE ++WL
Sbjct: 200 YKNNNKLREYQLEGVNWL 217
>ZFIN|ZDB-GENE-030131-497 [details] [associations]
symbol:chd9 "chromodomain helicase DNA binding
protein 9" species:7955 "Danio rerio" [GO:0016817 "hydrolase
activity, acting on acid anhydrides" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] InterPro:IPR000330 InterPro:IPR000953
InterPro:IPR001650 InterPro:IPR006576 Pfam:PF00176 Pfam:PF00271
Pfam:PF07533 PROSITE:PS50013 PROSITE:PS51194 SMART:SM00298
SMART:SM00490 SMART:SM00592 Pfam:PF00385 ZFIN:ZDB-GENE-030131-497
GO:GO:0005524 GO:GO:0005634 GO:GO:0003677 GO:GO:0004386
InterPro:IPR016197 SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 InterPro:IPR023780 GeneTree:ENSGT00560000077077
EMBL:CR318585 EMBL:CU464124 EMBL:FP015866 IPI:IPI00972236
Ensembl:ENSDART00000027807 Bgee:E7F7W5 Uniprot:E7F7W5
Length = 2948
Score = 134 (52.2 bits), Expect = 1.4e-13, Sum P(2) = 1.4e-13
Identities = 32/85 (37%), Positives = 51/85 (60%)
Query: 24 EQVDQAKRIISPFMLRRLKKDVLTELPKKTALVIKVPMIPSQAEKYRGLME-DFKKTANP 82
EQV + + I+ P MLRRLK+DV +L K +I+V + Q + YR ++E +F A
Sbjct: 1118 EQVQKLQAILKPMMLRRLKEDVEKKLAPKEETIIEVELTNIQKKYYRAILEKNFSFLA-- 1175
Query: 83 EGSNRSNEISHMSMFMMLRKMANHP 107
+G+ ++N + ++ M LRK NHP
Sbjct: 1176 KGAGQANVPNLLNTMMELRKCCNHP 1200
Score = 124 (48.7 bits), Expect = 1.4e-13, Sum P(2) = 1.4e-13
Identities = 25/61 (40%), Positives = 40/61 (65%)
Query: 173 LVVESGKLKKLDEILPDLKKNGHRVLIFSQFIFVLDILGHYMDIRGWRHLRLDGATQVSS 232
++ +GKL +D++LP +K GH+VLIFSQ + LDIL Y+ R + + R+DG + +
Sbjct: 1230 MIQSAGKLVLIDKLLPKMKAGGHKVLIFSQMVRCLDILEDYLIQRRYLYERIDGRVRGNL 1289
Query: 233 R 233
R
Sbjct: 1290 R 1290
>ZFIN|ZDB-GENE-021125-1 [details] [associations]
symbol:smarca5 "SWI/SNF related, matrix associated,
actin dependent regulator of chromatin, subfamily a, member 5"
species:7955 "Danio rerio" [GO:0043044 "ATP-dependent chromatin
remodeling" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0016818 "hydrolase activity, acting on
acid anhydrides, in phosphorus-containing anhydrides" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0031491 "nucleosome binding"
evidence=IEA] [GO:0003682 "chromatin binding" evidence=IEA]
[GO:0006338 "chromatin remodeling" evidence=IEA] [GO:0060041
"retina development in camera-type eye" evidence=IMP]
InterPro:IPR000330 InterPro:IPR001005 InterPro:IPR001650
InterPro:IPR009057 InterPro:IPR015194 InterPro:IPR015195
Pfam:PF00176 Pfam:PF00271 Pfam:PF09110 Pfam:PF09111 PROSITE:PS51194
SMART:SM00490 SMART:SM00717 ZFIN:ZDB-GENE-021125-1 GO:GO:0005524
GO:GO:0003677 Gene3D:1.10.10.60 SUPFAM:SSF46689 GO:GO:0060041
InterPro:IPR017884 PROSITE:PS51293 GO:GO:0004386 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0016585 GO:GO:0031491
GO:GO:0043044 GeneTree:ENSGT00680000100002 HOGENOM:HOG000192862
SUPFAM:SSF101224 OMA:EDYCHWR HOVERGEN:HBG056329 EMBL:CU550733
IPI:IPI00619566 UniGene:Dr.76168 Ensembl:ENSDART00000123972
ArrayExpress:B8A552 Bgee:B8A552 Uniprot:B8A552
Length = 1035
Score = 142 (55.0 bits), Expect = 1.5e-13, Sum P(2) = 1.5e-13
Identities = 33/61 (54%), Positives = 39/61 (63%)
Query: 173 LVVESGKLKKLDEILPDLKKNGHRVLIFSQFIFVLDILGHYMDIRGWRHLRLDGATQVSS 232
LVV SGK+ LD++LP LK+ G RVLIFSQ VLDIL Y R + + RLDG T
Sbjct: 461 LVVNSGKMVVLDKLLPKLKEQGSRVLIFSQMTRVLDILEDYCMWRNYGYCRLDGQTPHEE 520
Query: 233 R 233
R
Sbjct: 521 R 521
Score = 104 (41.7 bits), Expect = 1.5e-13, Sum P(2) = 1.5e-13
Identities = 33/107 (30%), Positives = 55/107 (51%)
Query: 3 SDSED-DARYEDKRKEQATFEVEQVDQAKRIISPFMLRRLKKDVLTELPKKTALVIKVPM 61
+ SED DA ++ + + V++ ++ PF+LRR+K DV L K + I V +
Sbjct: 343 NSSEDFDAWFDTNN---CLGDTKLVERLHTVLRPFLLRRIKADVEKSLLPKKEIKIYVGL 399
Query: 62 IPSQAEKY-RGLMEDFKKTANPEGSNRSNEISHMSMFMMLRKMANHP 107
Q E Y + LM+D N G + +++ +++ M LRK NHP
Sbjct: 400 SKMQREWYTKILMKDID-ILNSAG--KMDKMRLLNVLMQLRKCCNHP 443
>UNIPROTKB|E1BS48 [details] [associations]
symbol:CHD9 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001650
InterPro:IPR006576 Pfam:PF00176 Pfam:PF00271 Pfam:PF07533
PROSITE:PS50013 PROSITE:PS51194 SMART:SM00298 SMART:SM00490
SMART:SM00592 Pfam:PF00385 GO:GO:0005524 GO:GO:0005634
GO:GO:0003677 GO:GO:0004386 InterPro:IPR016197 SUPFAM:SSF54160
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 InterPro:IPR023780
GeneTree:ENSGT00560000077077 OMA:MWGHQTA EMBL:AADN02038292
EMBL:AADN02038293 EMBL:AADN02038294 EMBL:AADN02038295
EMBL:AADN02038296 EMBL:AADN02038297 EMBL:AADN02038298
IPI:IPI00579055 Ensembl:ENSGALT00000005902 Uniprot:E1BS48
Length = 2614
Score = 135 (52.6 bits), Expect = 1.7e-13, Sum P(2) = 1.7e-13
Identities = 40/120 (33%), Positives = 64/120 (53%)
Query: 24 EQVDQAKRIISPFMLRRLKKDVLTELPKKTALVIKVPMIPSQAEKYRGLMEDFKKTAN-P 82
EQV + + I+ P MLRRLK+DV +L K +I+V + Q + YR ++E K A
Sbjct: 1062 EQVQKLQAILKPMMLRRLKEDVEKKLAPKEETIIEVELTNIQKKYYRAILE--KNFAFLS 1119
Query: 83 EGSNRSNEISHMSMFMMLRKMANHPLGLRYYFQENTLREIADCLVEDPTYKGTNPQYILE 142
+G+ ++N + ++ M LRK NHP ++ +E L E + TY T P + L+
Sbjct: 1120 KGAGQANVPNLVNTMMELRKCCNHPYLIKGA-EEKILGEFKE------TYNPTAPDFHLQ 1172
Score = 121 (47.7 bits), Expect = 1.7e-13, Sum P(2) = 1.7e-13
Identities = 24/61 (39%), Positives = 40/61 (65%)
Query: 173 LVVESGKLKKLDEILPDLKKNGHRVLIFSQFIFVLDILGHYMDIRGWRHLRLDGATQVSS 232
++ +GKL +D++LP +K GH+VLIFSQ + LDIL Y+ + + + R+DG + +
Sbjct: 1174 MIQSAGKLVLIDKLLPKMKAGGHKVLIFSQMVRCLDILEDYLIHKRYLYERIDGRVRGNL 1233
Query: 233 R 233
R
Sbjct: 1234 R 1234
>DICTYBASE|DDB_G0267638 [details] [associations]
symbol:DDB_G0267638 "CHR group protein" species:44689
"Dictyostelium discoideum" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003682
"chromatin binding" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001005 InterPro:IPR001650
InterPro:IPR009057 Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 SMART:SM00717 dictyBase:DDB_G0267638 GO:GO:0005524
GO:GO:0003677 EMBL:AAFI02000003 GO:GO:0003682 SUPFAM:SSF46689
GO:GO:0004386 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 InterPro:IPR017877 PROSITE:PS50090
InterPro:IPR014012 PROSITE:PS51204 KO:K11320 RefSeq:XP_647182.1
ProteinModelPortal:Q55GK2 EnsemblProtists:DDB0220518 GeneID:8615986
KEGG:ddi:DDB_G0267638 InParanoid:Q55GK2 OMA:ISFEAFA Uniprot:Q55GK2
Length = 3069
Score = 130 (50.8 bits), Expect = 1.9e-13, Sum P(2) = 1.9e-13
Identities = 27/70 (38%), Positives = 45/70 (64%)
Query: 166 KYKVPDDLVVE--SGKLKKLDEILPDLKKNGHRVLIFSQFIFVLDILGHYMDIRGWRHLR 223
K PD +++ GKL++L +L LK+ GHR LIF+Q +LDI ++++ + +LR
Sbjct: 1365 KLYFPDKRLIQYDCGKLQQLAILLRRLKQQGHRALIFTQMTKMLDIFETFLNLHAYTYLR 1424
Query: 224 LDGATQVSSR 233
LDG+T++ R
Sbjct: 1425 LDGSTKIDKR 1434
Score = 128 (50.1 bits), Expect = 1.9e-13, Sum P(2) = 1.9e-13
Identities = 45/144 (31%), Positives = 74/144 (51%)
Query: 26 VDQAKRIISPFMLRRLKKDVLTELPKKTALVIKVPMIPSQAEKYRGLMEDFKKTANPEGS 85
+++ ++ PF+LRRLKKDV ++P K + VP S+ +K+ L E+F +++ + +
Sbjct: 989 INRLHAVLRPFLLRRLKKDVEKQMPPKHTHI--VPCSMSRRQKF--LYEEFINSSSTQST 1044
Query: 86 NRSNEI-SHMSMFMMLRKMANHPLGLRYYFQENTLREIADCLVEDPTYKGTNPQYILEDI 144
S S +++ M LRK+ NHP F+ +R I L P + T+ I+ DI
Sbjct: 1045 LSSGSFFSIINILMQLRKVCNHP----DLFE---IRPIVSPLELYPIHFKTSS--IVIDI 1095
Query: 145 SWLSDYDIHQLSLKHKTLDCAKYK 168
L D I L+L LD Y+
Sbjct: 1096 --LDDIPIKNLNLNLLNLDLINYE 1117
Score = 40 (19.1 bits), Expect = 0.00038, Sum P(2) = 0.00038
Identities = 13/39 (33%), Positives = 17/39 (43%)
Query: 166 KYKVPDDLVVESGKLK--KLDEILPDLKKNGHRVLIFSQ 202
K VPDD++V G K D L D + L+ Q
Sbjct: 2212 KRLVPDDIIVTGGVANSDKSDAELEDFAGSLEESLVSKQ 2250
>RGD|1561046 [details] [associations]
symbol:Smarca1 "SWI/SNF related, matrix associated, actin
dependent regulator of chromatin, subfamily a, member 1"
species:10116 "Rattus norvegicus" [GO:0000733 "DNA strand
renaturation" evidence=ISO] [GO:0000790 "nuclear chromatin"
evidence=ISO] [GO:0003677 "DNA binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA;ISO] [GO:0006338
"chromatin remodeling" evidence=ISO] [GO:0006351 "transcription,
DNA-dependent" evidence=ISO] [GO:0007420 "brain development"
evidence=ISO] [GO:0016589 "NURF complex" evidence=ISO] [GO:0030182
"neuron differentiation" evidence=ISO] [GO:0031491 "nucleosome
binding" evidence=IEA] [GO:0036310 "annealing helicase activity"
evidence=ISO] [GO:0043044 "ATP-dependent chromatin remodeling"
evidence=IEA;ISO] [GO:0045893 "positive regulation of
transcription, DNA-dependent" evidence=ISO] [GO:0090537 "CERF
complex" evidence=ISO] [GO:2000177 "regulation of neural precursor
cell proliferation" evidence=ISO] [GO:0008094 "DNA-dependent ATPase
activity" evidence=ISO] [GO:0070615 "nucleosome-dependent ATPase
activity" evidence=ISO] InterPro:IPR000330 InterPro:IPR001005
InterPro:IPR001650 InterPro:IPR009057 InterPro:IPR015194
InterPro:IPR015195 InterPro:IPR020838 Pfam:PF00176 Pfam:PF00271
Pfam:PF09110 Pfam:PF09111 Pfam:PF13892 PROSITE:PS51194
SMART:SM00490 SMART:SM00717 RGD:1561046 GO:GO:0005524 GO:GO:0003677
Gene3D:1.10.10.60 SUPFAM:SSF46689 InterPro:IPR017884
PROSITE:PS51293 GO:GO:0004386 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0016585 GO:GO:0031491 GO:GO:0043044
GeneTree:ENSGT00680000100002 SUPFAM:SSF101224 IPI:IPI00947680
PRIDE:D3ZIE5 Ensembl:ENSRNOT00000068478 UCSC:RGD:1561046
ArrayExpress:D3ZIE5 Uniprot:D3ZIE5
Length = 1034
Score = 135 (52.6 bits), Expect = 1.9e-13, Sum P(2) = 1.9e-13
Identities = 30/67 (44%), Positives = 40/67 (59%)
Query: 167 YKVPDDLVVESGKLKKLDEILPDLKKNGHRVLIFSQFIFVLDILGHYMDIRGWRHLRLDG 226
Y + +V SGK+ LD++L +K+ G RVLIFSQ +LDIL Y RG+ + RLDG
Sbjct: 455 YTTDEHIVSNSGKMVALDKLLARIKEQGSRVLIFSQMTRLLDILEDYCMWRGYEYCRLDG 514
Query: 227 ATQVSSR 233
T R
Sbjct: 515 QTPHEER 521
Score = 112 (44.5 bits), Expect = 1.9e-13, Sum P(2) = 1.9e-13
Identities = 28/83 (33%), Positives = 46/83 (55%)
Query: 26 VDQAKRIISPFMLRRLKKDVLTELPKKTALVIKVPMIPSQAEKY-RGLMEDFKKTANPEG 84
V++ ++ PF+LRR+K DV LP K + I + + Q E Y + LM+D N G
Sbjct: 364 VERLHAVLKPFLLRRIKTDVEKSLPPKKEIKIYLGLSKMQREWYTKILMKDID-VLNSSG 422
Query: 85 SNRSNEISHMSMFMMLRKMANHP 107
+ +++ +++ M LRK NHP
Sbjct: 423 --KMDKMRLLNILMQLRKCCNHP 443
Score = 42 (19.8 bits), Expect = 3.1e-06, Sum P(2) = 3.1e-06
Identities = 13/52 (25%), Positives = 22/52 (42%)
Query: 3 SDSEDDARYEDKRKEQATFEVEQVDQAKRIISPFMLRRLKKDVLTELPKKTA 54
S+ E D YE+K K E + + + + F+ +K + L K A
Sbjct: 55 SEKEMDPEYEEKMKADRAKRFEFLLKQTELFAHFIQPSAQKSPTSPLNMKLA 106
>UNIPROTKB|E2QUR1 [details] [associations]
symbol:CHD8 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005634 "nucleus" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001650
InterPro:IPR006576 Pfam:PF00176 Pfam:PF00271 Pfam:PF07533
PROSITE:PS50013 PROSITE:PS51194 SMART:SM00298 SMART:SM00490
SMART:SM00592 Pfam:PF00385 GO:GO:0005524 GO:GO:0005634
GO:GO:0003677 GO:GO:0004386 InterPro:IPR016197 SUPFAM:SSF54160
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 InterPro:IPR023780
GeneTree:ENSGT00560000077077 EMBL:AAEX03009852
Ensembl:ENSCAFT00000009072 Uniprot:E2QUR1
Length = 2200
Score = 129 (50.5 bits), Expect = 2.0e-13, Sum P(2) = 2.0e-13
Identities = 31/85 (36%), Positives = 49/85 (57%)
Query: 24 EQVDQAKRIISPFMLRRLKKDVLTELPKKTALVIKVPMIPSQAEKYRGLME-DFKKTANP 82
EQV + + I+ P MLRRLK+DV L K +I+V + Q + YR ++E +F +
Sbjct: 633 EQVQKLQAILKPMMLRRLKEDVEKNLAPKQETIIEVELTNIQKKYYRAILEKNFSFLS-- 690
Query: 83 EGSNRSNEISHMSMFMMLRKMANHP 107
+G+ +N + ++ M LRK NHP
Sbjct: 691 KGAGHTNMPNLLNTMMELRKCCNHP 715
Score = 126 (49.4 bits), Expect = 2.0e-13, Sum P(2) = 2.0e-13
Identities = 27/61 (44%), Positives = 40/61 (65%)
Query: 173 LVVESGKLKKLDEILPDLKKNGHRVLIFSQFIFVLDILGHYMDIRGWRHLRLDGATQVSS 232
+V +GKL +D++LP LK GH+VLIFSQ + LDIL Y+ R + + R+DG + +
Sbjct: 745 MVRSAGKLVLIDKLLPKLKAGGHKVLIFSQMVRCLDILEDYLIQRRYLYERIDGRVRGNL 804
Query: 233 R 233
R
Sbjct: 805 R 805
Score = 38 (18.4 bits), Expect = 0.00023, Sum P(2) = 0.00023
Identities = 14/49 (28%), Positives = 23/49 (46%)
Query: 143 DISWLSDYDIHQLSLKHKTLDCAKYKVPDDLVVESGKLKKLDEILPDLK 191
DIS L D + Q K LD ++LV+++ +++K LK
Sbjct: 982 DIS-LDDPNFWQKWAKKADLDMDLLNSKNNLVIDTPRVRKQTRHFSTLK 1029
Score = 38 (18.4 bits), Expect = 0.00053, Sum P(2) = 0.00053
Identities = 8/18 (44%), Positives = 11/18 (61%)
Query: 132 YKGTNP--QYILEDISWL 147
YK N +Y LE ++WL
Sbjct: 422 YKNRNQLREYQLEGVNWL 439
>DICTYBASE|DDB_G0284171 [details] [associations]
symbol:DDB_G0284171 "CHR group protein" species:44689
"Dictyostelium discoideum" [GO:0005634 "nucleus" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA;ISS]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0006357
"regulation of transcription from RNA polymerase II promoter"
evidence=ISS] [GO:0004003 "ATP-dependent DNA helicase activity"
evidence=ISS] InterPro:IPR000330 InterPro:IPR000953
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 PROSITE:PS50013
PROSITE:PS51194 SMART:SM00298 SMART:SM00490 dictyBase:DDB_G0284171
Pfam:PF00385 GO:GO:0005524 GO:GO:0005634 GO:GO:0003677
GO:GO:0006357 EMBL:AAFI02000063 GO:GO:0004003 InterPro:IPR016197
SUPFAM:SSF54160 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 InterPro:IPR023780 InterPro:IPR025260 Pfam:PF13907
KO:K11367 RefSeq:XP_638708.1 ProteinModelPortal:Q54Q16
STRING:Q54Q16 EnsemblProtists:DDB0220640 GeneID:8624452
KEGG:ddi:DDB_G0284171 InParanoid:Q54Q16 OMA:DINATEF
ProtClustDB:CLSZ2732060 Uniprot:Q54Q16
Length = 1917
Score = 139 (54.0 bits), Expect = 2.2e-13, Sum P(3) = 2.2e-13
Identities = 30/63 (47%), Positives = 41/63 (65%)
Query: 171 DDLVVESGKLKKLDEILPDLKKNGHRVLIFSQFIFVLDILGHYMDIRGWRHLRLDGATQV 230
D ++ SGKL LD++L LK+ GHRVLIFSQ + +LDIL Y+ R ++ RLDG+
Sbjct: 1058 DSMIRASGKLVLLDKLLIRLKETGHRVLIFSQMVRMLDILADYLKGRSFQFQRLDGSMSR 1117
Query: 231 SSR 233
R
Sbjct: 1118 EKR 1120
Score = 112 (44.5 bits), Expect = 2.2e-13, Sum P(3) = 2.2e-13
Identities = 25/87 (28%), Positives = 50/87 (57%)
Query: 22 EVEQVDQAKRIISPFMLRRLKKDVLTELPKKTALVIKVPMIPSQAEKYRGLM-EDFKKTA 80
E +Q+ Q ++ P +LRR+KKDV LP KT +++V + Q + Y+ ++ ++F++
Sbjct: 957 ENDQIAQLHSVLKPHLLRRIKKDVEKSLPPKTERILRVDLSNVQKKYYKWILTKNFQELN 1016
Query: 81 NPEGSNRSNEISHMSMFMMLRKMANHP 107
+G + + +++ L+K NHP
Sbjct: 1017 KGKGE----KTTLLNIMTELKKTCNHP 1039
Score = 40 (19.1 bits), Expect = 3.9e-06, Sum P(3) = 3.9e-06
Identities = 9/37 (24%), Positives = 17/37 (45%)
Query: 140 ILEDISWLSDYDIHQLSLKHKTLDCAKYKVPDDLVVE 176
IL++I W + + T + K ++ D +VE
Sbjct: 598 ILDNIQWRQEASKEDIEQADITKELMKQEIQDYTIVE 634
Score = 39 (18.8 bits), Expect = 2.2e-13, Sum P(3) = 2.2e-13
Identities = 10/21 (47%), Positives = 16/21 (76%)
Query: 2 DSD-SEDDARYE-DKRKEQAT 20
DS+ SE D+ YE +K+K++ T
Sbjct: 361 DSEESESDSDYEPNKKKKKQT 381
Score = 36 (17.7 bits), Expect = 4.4e-13, Sum P(3) = 4.4e-13
Identities = 6/15 (40%), Positives = 11/15 (73%)
Query: 2 DSDSEDDARYEDKRK 16
+SD++DD Y K++
Sbjct: 316 ESDTDDDDVYTKKKR 330
Score = 36 (17.7 bits), Expect = 7.7e-06, Sum P(3) = 7.7e-06
Identities = 11/57 (19%), Positives = 25/57 (43%)
Query: 3 SDSEDDARYEDKRKEQATFEVEQVDQAKRIISPFMLRRLKKDVLTELPKKTALVIKV 59
S SE + +E + E Q ++++ + ++++ KK+ +V KV
Sbjct: 223 SSSESSSESSSSEEESESQEDTPNKQRNKVLTQQLASESEEELQPVNKKKSTMVKKV 279
>UNIPROTKB|E1BPM4 [details] [associations]
symbol:CHD7 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0060324 "face development" evidence=IEA] [GO:0060123
"regulation of growth hormone secretion" evidence=IEA] [GO:0060041
"retina development in camera-type eye" evidence=IEA] [GO:0060021
"palate development" evidence=IEA] [GO:0050890 "cognition"
evidence=IEA] [GO:0048844 "artery morphogenesis" evidence=IEA]
[GO:0048752 "semicircular canal morphogenesis" evidence=IEA]
[GO:0043584 "nose development" evidence=IEA] [GO:0040018 "positive
regulation of multicellular organism growth" evidence=IEA]
[GO:0035116 "embryonic hindlimb morphogenesis" evidence=IEA]
[GO:0030540 "female genitalia development" evidence=IEA]
[GO:0030217 "T cell differentiation" evidence=IEA] [GO:0021545
"cranial nerve development" evidence=IEA] [GO:0008015 "blood
circulation" evidence=IEA] [GO:0007628 "adult walking behavior"
evidence=IEA] [GO:0007605 "sensory perception of sound"
evidence=IEA] [GO:0007512 "adult heart development" evidence=IEA]
[GO:0007417 "central nervous system development" evidence=IEA]
[GO:0003007 "heart morphogenesis" evidence=IEA] [GO:0001701 "in
utero embryonic development" evidence=IEA] [GO:0001501 "skeletal
system development" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0003682 "chromatin binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001005
InterPro:IPR001650 InterPro:IPR006576 Pfam:PF00176 Pfam:PF00271
Pfam:PF07533 PROSITE:PS50013 PROSITE:PS51194 SMART:SM00298
SMART:SM00490 SMART:SM00592 SMART:SM00717 Pfam:PF00385
GO:GO:0005524 GO:GO:0005634 GO:GO:0003677 GO:GO:0008015
GO:GO:0003007 GO:GO:0050890 GO:GO:0001701 GO:GO:0040018
GO:GO:0007417 GO:GO:0003682 GO:GO:0001501 GO:GO:0060041
GO:GO:0007605 GO:GO:0007512 GO:GO:0004386 GO:GO:0035116
GO:GO:0060324 GO:GO:0060021 GO:GO:0048844 InterPro:IPR016197
SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0030540 GO:GO:0007628 GO:GO:0030217 GO:GO:0048752
InterPro:IPR023780 OMA:TFGVIFD GO:GO:0021545 GO:GO:0043584
GO:GO:0060123 GeneTree:ENSGT00560000077077 EMBL:DAAA02038386
EMBL:DAAA02038387 EMBL:DAAA02038388 IPI:IPI00697020
Ensembl:ENSBTAT00000026607 Uniprot:E1BPM4
Length = 2940
Score = 129 (50.5 bits), Expect = 2.3e-13, Sum P(2) = 2.3e-13
Identities = 39/120 (32%), Positives = 61/120 (50%)
Query: 24 EQVDQAKRIISPFMLRRLKKDVLTELPKKTALVIKVPMIPSQAEKYRGLMEDFKKTAN-P 82
EQV + + I+ P MLRRLK+DV L K +I+V + Q + YR ++E K A
Sbjct: 1123 EQVQKLQAILKPMMLRRLKEDVEKNLAPKEETIIEVELTNIQKKYYRAILE--KNFAFLS 1180
Query: 83 EGSNRSNEISHMSMFMMLRKMANHPLGLRYYFQENTLREIADCLVEDPTYKGTNPQYILE 142
+G ++N + ++ M LRK NHP L +E L E + T+ +P + L+
Sbjct: 1181 KGGGQANVPNLLNTMMELRKCCNHPY-LINGAEEKILEEFKE------THNADSPDFQLQ 1233
Score = 128 (50.1 bits), Expect = 2.3e-13, Sum P(2) = 2.3e-13
Identities = 27/61 (44%), Positives = 40/61 (65%)
Query: 173 LVVESGKLKKLDEILPDLKKNGHRVLIFSQFIFVLDILGHYMDIRGWRHLRLDGATQVSS 232
++ +GKL +D++LP LK GHRVLIFSQ + LDIL Y+ R + + R+DG + +
Sbjct: 1235 MIQAAGKLVLIDKLLPKLKAGGHRVLIFSQMVRCLDILEDYLIQRRYPYERIDGRVRGNL 1294
Query: 233 R 233
R
Sbjct: 1295 R 1295
Score = 39 (18.8 bits), Expect = 0.00033, Sum P(2) = 0.00033
Identities = 13/51 (25%), Positives = 26/51 (50%)
Query: 143 DISWLSDYDIHQLSLKHKTLDCAKYKVPDDLVVESGKLKKLDEILPDLKKN 193
DIS L D + Q K LD ++LV+++ +++K + +K++
Sbjct: 1472 DIS-LDDPNFWQKWAKKAELDIDALNGRNNLVIDTPRVRKQTRLYSAVKED 1521
Score = 39 (18.8 bits), Expect = 0.00043, Sum P(2) = 0.00043
Identities = 8/18 (44%), Positives = 11/18 (61%)
Query: 132 YKGTNP--QYILEDISWL 147
YK N +Y LE ++WL
Sbjct: 912 YKNNNKLREYQLEGVNWL 929
>UNIPROTKB|G4NCV5 [details] [associations]
symbol:MGG_01012 "ISWI chromatin-remodeling complex ATPase
ISW2" species:242507 "Magnaporthe oryzae 70-15" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000330
InterPro:IPR001005 InterPro:IPR001650 InterPro:IPR009057
InterPro:IPR015194 InterPro:IPR015195 Pfam:PF00176 Pfam:PF00271
Pfam:PF09110 Pfam:PF09111 PROSITE:PS51194 SMART:SM00490
SMART:SM00717 GO:GO:0005524 EMBL:CM001235 GO:GO:0003677
Gene3D:1.10.10.60 SUPFAM:SSF46689 InterPro:IPR017884
PROSITE:PS51293 GO:GO:0004386 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0016585 GO:GO:0031491 GO:GO:0043044
SUPFAM:SSF101224 RefSeq:XP_003717932.1 EnsemblFungi:MGG_01012T0
GeneID:2674262 KEGG:mgr:MGG_01012 Uniprot:G4NCV5
Length = 1128
Score = 134 (52.2 bits), Expect = 2.4e-13, Sum P(2) = 2.4e-13
Identities = 31/67 (46%), Positives = 39/67 (58%)
Query: 167 YKVPDDLVVESGKLKKLDEILPDLKKNGHRVLIFSQFIFVLDILGHYMDIRGWRHLRLDG 226
Y + LV SGK+ LD++L LK G RVLIFSQ VLDIL Y R +++ R+DG
Sbjct: 479 YTTDEHLVYNSGKMVVLDKLLKRLKAQGSRVLIFSQMSRVLDILEDYCVFREYKYSRIDG 538
Query: 227 ATQVSSR 233
T R
Sbjct: 539 GTAHEDR 545
Score = 113 (44.8 bits), Expect = 2.4e-13, Sum P(2) = 2.4e-13
Identities = 26/82 (31%), Positives = 41/82 (50%)
Query: 26 VDQAKRIISPFMLRRLKKDVLTELPKKTALVIKVPMIPSQAEKYRGLMEDFKKTANPEGS 85
V Q R++ PF+LRR+K DV L K + + + M Q Y+ ++E N
Sbjct: 386 VQQLHRVLRPFLLRRVKADVEKSLLPKKEVNLYLKMTEMQRTWYQKILEKDIDAVNGANG 445
Query: 86 NRSNEISHMSMFMMLRKMANHP 107
R ++ +++ M LRK NHP
Sbjct: 446 KRESKTRLLNIVMQLRKCCNHP 467
>UNIPROTKB|Q06A37 [details] [associations]
symbol:CHD7 "Chromodomain-helicase-DNA-binding protein 7"
species:9031 "Gallus gallus" [GO:0003682 "chromatin binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0016568 "chromatin modification"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001005
InterPro:IPR001650 InterPro:IPR006576 Pfam:PF00176 Pfam:PF00271
Pfam:PF07533 PROSITE:PS00690 PROSITE:PS50013 PROSITE:PS51194
SMART:SM00298 SMART:SM00490 SMART:SM00592 SMART:SM00717
Pfam:PF00385 GO:GO:0005524 GO:GO:0005634 GO:GO:0006355
GO:GO:0003677 GO:GO:0006351 GO:GO:0003682 GO:GO:0016568
GO:GO:0004386 InterPro:IPR016197 SUPFAM:SSF54160 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 InterPro:IPR023780
PROSITE:PS00598 HOVERGEN:HBG081150 EMBL:DQ978381 IPI:IPI00590082
RefSeq:NP_001071054.1 UniGene:Gga.20865 ProteinModelPortal:Q06A37
SMR:Q06A37 GeneID:421140 KEGG:gga:421140 CTD:55636
HOGENOM:HOG000246942 InParanoid:Q06A37 KO:K14437 OrthoDB:EOG4MCWZD
NextBio:20823957 Uniprot:Q06A37
Length = 3011
Score = 129 (50.5 bits), Expect = 2.4e-13, Sum P(2) = 2.4e-13
Identities = 39/120 (32%), Positives = 61/120 (50%)
Query: 24 EQVDQAKRIISPFMLRRLKKDVLTELPKKTALVIKVPMIPSQAEKYRGLMEDFKKTAN-P 82
EQV + + I+ P MLRRLK+DV L K +I+V + Q + YR ++E K A
Sbjct: 1174 EQVQKLQAILKPMMLRRLKEDVEKNLAPKEETIIEVELTNIQKKYYRAILE--KNFAFLS 1231
Query: 83 EGSNRSNEISHMSMFMMLRKMANHPLGLRYYFQENTLREIADCLVEDPTYKGTNPQYILE 142
+G ++N + ++ M LRK NHP L +E L E + T+ +P + L+
Sbjct: 1232 KGGGQANVPNLLNTMMELRKCCNHPY-LINGAEEKILEEFKE------THNADSPDFQLQ 1284
Score = 128 (50.1 bits), Expect = 2.4e-13, Sum P(2) = 2.4e-13
Identities = 27/61 (44%), Positives = 40/61 (65%)
Query: 173 LVVESGKLKKLDEILPDLKKNGHRVLIFSQFIFVLDILGHYMDIRGWRHLRLDGATQVSS 232
++ +GKL +D++LP LK GHRVLIFSQ + LDIL Y+ R + + R+DG + +
Sbjct: 1286 MIQAAGKLVLIDKLLPKLKAGGHRVLIFSQMVRCLDILEDYLIQRRYPYERIDGRVRGNL 1345
Query: 233 R 233
R
Sbjct: 1346 R 1346
Score = 39 (18.8 bits), Expect = 0.00035, Sum P(2) = 0.00035
Identities = 13/51 (25%), Positives = 26/51 (50%)
Query: 143 DISWLSDYDIHQLSLKHKTLDCAKYKVPDDLVVESGKLKKLDEILPDLKKN 193
DIS L D + Q K LD ++LV+++ +++K + +K++
Sbjct: 1523 DIS-LDDPNFWQKWAKKAELDIDALNGRNNLVIDTPRVRKQTRLYSAVKED 1572
>UNIPROTKB|Q9HCK8 [details] [associations]
symbol:CHD8 "Chromodomain-helicase-DNA-binding protein 8"
species:9606 "Homo sapiens" [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0001701 "in utero embryonic
development" evidence=IEA] [GO:0043066 "negative regulation of
apoptotic process" evidence=IEA] [GO:0070016 "armadillo repeat
domain binding" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IMP] [GO:0005634 "nucleus" evidence=IDA] [GO:0060070
"canonical Wnt receptor signaling pathway" evidence=IDA]
[GO:0030178 "negative regulation of Wnt receptor signaling pathway"
evidence=IDA] [GO:0045893 "positive regulation of transcription,
DNA-dependent" evidence=IDA] [GO:0005524 "ATP binding"
evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0003678 "DNA helicase activity" evidence=IMP] [GO:0035064
"methylated histone residue binding" evidence=IDA] [GO:0045945
"positive regulation of transcription from RNA polymerase III
promoter" evidence=IMP] [GO:0045944 "positive regulation of
transcription from RNA polymerase II promoter" evidence=IMP]
[GO:0045892 "negative regulation of transcription, DNA-dependent"
evidence=IMP] [GO:0008094 "DNA-dependent ATPase activity"
evidence=IDA] [GO:0043044 "ATP-dependent chromatin remodeling"
evidence=IMP] [GO:0043234 "protein complex" evidence=IDA]
[GO:0002039 "p53 binding" evidence=ISS] [GO:0008013 "beta-catenin
binding" evidence=IDA] [GO:0071339 "MLL1 complex" evidence=IDA]
[GO:0042393 "histone binding" evidence=ISS] [GO:0032508 "DNA duplex
unwinding" evidence=IMP] InterPro:IPR000330 InterPro:IPR000953
InterPro:IPR001650 InterPro:IPR006576 Pfam:PF00176 Pfam:PF00271
Pfam:PF07533 PROSITE:PS00690 PROSITE:PS50013 PROSITE:PS51194
SMART:SM00298 SMART:SM00490 SMART:SM00592 Pfam:PF00385
GO:GO:0005524 GO:GO:0045892 GO:GO:0043066 GO:GO:0003677
GO:GO:0001701 GO:GO:0045944 GO:GO:0006351 GO:GO:0035064
GO:GO:0008013 GO:GO:0045945 GO:GO:0030178 GO:GO:0060070
InterPro:IPR016197 SUPFAM:SSF54160 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0003678
GO:GO:0043044 GO:GO:0071339 GO:GO:0002039 InterPro:IPR023780
PROSITE:PS00598 GO:GO:0008094 HOVERGEN:HBG107676 EMBL:CR749315
EMBL:AL834524 EMBL:AL135744 EMBL:AL161747 EMBL:CB043942
EMBL:AB046784 EMBL:AK131077 EMBL:BC011695 EMBL:BC025964
EMBL:BC036920 EMBL:BC063693 EMBL:BC073903 EMBL:BC098452
IPI:IPI00398992 IPI:IPI00719073 RefSeq:NP_001164100.1
RefSeq:NP_065971.2 UniGene:Hs.530698 PDB:2CKA PDB:2DL6 PDBsum:2CKA
PDBsum:2DL6 ProteinModelPortal:Q9HCK8 SMR:Q9HCK8 IntAct:Q9HCK8
STRING:Q9HCK8 PhosphoSite:Q9HCK8 DMDM:226706293 PaxDb:Q9HCK8
PRIDE:Q9HCK8 Ensembl:ENST00000399982 Ensembl:ENST00000430710
Ensembl:ENST00000557364 GeneID:57680 KEGG:hsa:57680 UCSC:uc001war.2
UCSC:uc001was.2 CTD:57680 GeneCards:GC14M021853 HGNC:HGNC:20153
HPA:HPA000849 MIM:610528 neXtProt:NX_Q9HCK8 PharmGKB:PA134957052
KO:K04494 OMA:FLAYMED EvolutionaryTrace:Q9HCK8 GenomeRNAi:57680
NextBio:64494 ArrayExpress:Q9HCK8 Bgee:Q9HCK8 CleanEx:HS_CHD8
Genevestigator:Q9HCK8 GermOnline:ENSG00000100888 Uniprot:Q9HCK8
Length = 2581
Score = 129 (50.5 bits), Expect = 2.8e-13, Sum P(2) = 2.8e-13
Identities = 31/85 (36%), Positives = 49/85 (57%)
Query: 24 EQVDQAKRIISPFMLRRLKKDVLTELPKKTALVIKVPMIPSQAEKYRGLME-DFKKTANP 82
EQV + + I+ P MLRRLK+DV L K +I+V + Q + YR ++E +F +
Sbjct: 1016 EQVQKLQAILKPMMLRRLKEDVEKNLAPKQETIIEVELTNIQKKYYRAILEKNFSFLS-- 1073
Query: 83 EGSNRSNEISHMSMFMMLRKMANHP 107
+G+ +N + ++ M LRK NHP
Sbjct: 1074 KGAGHTNMPNLLNTMMELRKCCNHP 1098
Score = 126 (49.4 bits), Expect = 2.8e-13, Sum P(2) = 2.8e-13
Identities = 27/61 (44%), Positives = 40/61 (65%)
Query: 173 LVVESGKLKKLDEILPDLKKNGHRVLIFSQFIFVLDILGHYMDIRGWRHLRLDGATQVSS 232
+V +GKL +D++LP LK GH+VLIFSQ + LDIL Y+ R + + R+DG + +
Sbjct: 1128 MVRSAGKLVLIDKLLPKLKAGGHKVLIFSQMVRCLDILEDYLIQRRYLYERIDGRVRGNL 1187
Query: 233 R 233
R
Sbjct: 1188 R 1188
Score = 38 (18.4 bits), Expect = 0.00032, Sum P(2) = 0.00032
Identities = 14/49 (28%), Positives = 23/49 (46%)
Query: 143 DISWLSDYDIHQLSLKHKTLDCAKYKVPDDLVVESGKLKKLDEILPDLK 191
DIS L D + Q K LD ++LV+++ +++K LK
Sbjct: 1365 DIS-LDDPNFWQKWAKKADLDMDLLNSKNNLVIDTPRVRKQTRHFSTLK 1412
Score = 38 (18.4 bits), Expect = 0.00074, Sum P(2) = 0.00074
Identities = 8/18 (44%), Positives = 11/18 (61%)
Query: 132 YKGTNP--QYILEDISWL 147
YK N +Y LE ++WL
Sbjct: 805 YKNRNQLREYQLEGVNWL 822
>RGD|620696 [details] [associations]
symbol:Chd8 "chromodomain helicase DNA binding protein 8"
species:10116 "Rattus norvegicus" [GO:0001701 "in utero embryonic
development" evidence=IEA;ISO] [GO:0002039 "p53 binding"
evidence=ISO;ISS] [GO:0003677 "DNA binding" evidence=ISO;ISS]
[GO:0003678 "DNA helicase activity" evidence=ISO;ISS] [GO:0005515
"protein binding" evidence=IPI] [GO:0005524 "ATP binding"
evidence=ISO;ISS] [GO:0005634 "nucleus" evidence=ISO;IDA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0008013 "beta-catenin binding" evidence=ISO;IDA] [GO:0008094
"DNA-dependent ATPase activity" evidence=ISO;ISS] [GO:0030178
"negative regulation of Wnt receptor signaling pathway"
evidence=ISO;IDA] [GO:0032508 "DNA duplex unwinding" evidence=ISO]
[GO:0035064 "methylated histone residue binding" evidence=ISO;ISS]
[GO:0042393 "histone binding" evidence=ISO;ISS] [GO:0043044
"ATP-dependent chromatin remodeling" evidence=ISO;ISS] [GO:0043066
"negative regulation of apoptotic process" evidence=ISO;ISS]
[GO:0043234 "protein complex" evidence=ISO;IDA] [GO:0045892
"negative regulation of transcription, DNA-dependent"
evidence=ISO;IDA] [GO:0045893 "positive regulation of
transcription, DNA-dependent" evidence=ISO;ISS] [GO:0045944
"positive regulation of transcription from RNA polymerase II
promoter" evidence=ISO;ISS] [GO:0045945 "positive regulation of
transcription from RNA polymerase III promoter" evidence=ISO;ISS]
[GO:0060070 "canonical Wnt receptor signaling pathway"
evidence=ISO;IDA] [GO:0070016 "armadillo repeat domain binding"
evidence=IPI] [GO:0071339 "MLL1 complex" evidence=ISO;ISS]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001650
InterPro:IPR006576 Pfam:PF00176 Pfam:PF00271 Pfam:PF07533
PROSITE:PS00690 PROSITE:PS50013 PROSITE:PS51194 SMART:SM00298
SMART:SM00490 SMART:SM00592 Pfam:PF00385 RGD:620696 GO:GO:0005524
GO:GO:0045892 GO:GO:0043066 GO:GO:0003677 GO:GO:0001701
GO:GO:0045944 GO:GO:0006351 GO:GO:0035064 GO:GO:0008013
GO:GO:0045945 GO:GO:0030178 GO:GO:0060070 InterPro:IPR016197
SUPFAM:SSF54160 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0003678 GO:GO:0043044 GO:GO:0071339
GO:GO:0002039 EMBL:CH474040 InterPro:IPR023780 PROSITE:PS00598
GO:GO:0008094 HOGENOM:HOG000246942 GeneTree:ENSGT00560000077077
HOVERGEN:HBG107676 OrthoDB:EOG4ZPDTC CTD:57680 KO:K04494
EMBL:AF169825 IPI:IPI00201110 IPI:IPI00923717 RefSeq:NP_075222.2
UniGene:Rn.98337 STRING:Q9JIX5 PhosphoSite:Q9JIX5 PRIDE:Q9JIX5
Ensembl:ENSRNOT00000022593 GeneID:65027 KEGG:rno:65027
UCSC:RGD:620696 NextBio:613802 Genevestigator:Q9JIX5 Uniprot:Q9JIX5
Length = 2581
Score = 129 (50.5 bits), Expect = 2.8e-13, Sum P(2) = 2.8e-13
Identities = 31/85 (36%), Positives = 49/85 (57%)
Query: 24 EQVDQAKRIISPFMLRRLKKDVLTELPKKTALVIKVPMIPSQAEKYRGLME-DFKKTANP 82
EQV + + I+ P MLRRLK+DV L K +I+V + Q + YR ++E +F +
Sbjct: 1016 EQVQKLQAILKPMMLRRLKEDVEKNLAPKQETIIEVELTNIQKKYYRAILEKNFSFLS-- 1073
Query: 83 EGSNRSNEISHMSMFMMLRKMANHP 107
+G+ +N + ++ M LRK NHP
Sbjct: 1074 KGAGHTNMPNLLNTMMELRKCCNHP 1098
Score = 126 (49.4 bits), Expect = 2.8e-13, Sum P(2) = 2.8e-13
Identities = 27/61 (44%), Positives = 40/61 (65%)
Query: 173 LVVESGKLKKLDEILPDLKKNGHRVLIFSQFIFVLDILGHYMDIRGWRHLRLDGATQVSS 232
+V +GKL +D++LP LK GH+VLIFSQ + LDIL Y+ R + + R+DG + +
Sbjct: 1128 MVRSAGKLVLIDKLLPKLKAGGHKVLIFSQMVRCLDILEDYLIQRRYLYERIDGRVRGNL 1187
Query: 233 R 233
R
Sbjct: 1188 R 1188
Score = 38 (18.4 bits), Expect = 0.00032, Sum P(2) = 0.00032
Identities = 14/49 (28%), Positives = 23/49 (46%)
Query: 143 DISWLSDYDIHQLSLKHKTLDCAKYKVPDDLVVESGKLKKLDEILPDLK 191
DIS L D + Q K LD ++LV+++ +++K LK
Sbjct: 1365 DIS-LDDPNFWQKWAKKADLDMDLLNSKNNLVIDTPRVRKQTRHFSTLK 1412
Score = 38 (18.4 bits), Expect = 0.00074, Sum P(2) = 0.00074
Identities = 8/18 (44%), Positives = 11/18 (61%)
Query: 132 YKGTNP--QYILEDISWL 147
YK N +Y LE ++WL
Sbjct: 805 YKNRNQLREYQLEGVNWL 822
>MGI|MGI:1915022 [details] [associations]
symbol:Chd8 "chromodomain helicase DNA binding protein 8"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0001701 "in utero embryonic development"
evidence=IMP] [GO:0002039 "p53 binding" evidence=IPI] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0003677 "DNA binding"
evidence=ISO;IDA] [GO:0003678 "DNA helicase activity" evidence=ISO]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005515 "protein
binding" evidence=IPI] [GO:0005524 "ATP binding" evidence=ISO]
[GO:0005634 "nucleus" evidence=ISO;IDA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0008013
"beta-catenin binding" evidence=ISO] [GO:0008094 "DNA-dependent
ATPase activity" evidence=ISO] [GO:0016055 "Wnt receptor signaling
pathway" evidence=IEA] [GO:0016568 "chromatin modification"
evidence=IEA] [GO:0016787 "hydrolase activity" evidence=IEA]
[GO:0016817 "hydrolase activity, acting on acid anhydrides"
evidence=IEA] [GO:0030178 "negative regulation of Wnt receptor
signaling pathway" evidence=ISO] [GO:0032508 "DNA duplex unwinding"
evidence=ISO] [GO:0035064 "methylated histone residue binding"
evidence=ISO] [GO:0042393 "histone binding" evidence=IDA]
[GO:0043044 "ATP-dependent chromatin remodeling" evidence=ISO]
[GO:0043066 "negative regulation of apoptotic process"
evidence=IMP;IDA] [GO:0043234 "protein complex" evidence=ISO]
[GO:0045892 "negative regulation of transcription, DNA-dependent"
evidence=ISO;IDA] [GO:0045893 "positive regulation of
transcription, DNA-dependent" evidence=ISO] [GO:0045944 "positive
regulation of transcription from RNA polymerase II promoter"
evidence=ISO] [GO:0045945 "positive regulation of transcription
from RNA polymerase III promoter" evidence=ISO] [GO:0060070
"canonical Wnt receptor signaling pathway" evidence=ISO]
[GO:0070016 "armadillo repeat domain binding" evidence=ISO]
[GO:0071339 "MLL1 complex" evidence=ISO] InterPro:IPR000330
InterPro:IPR000953 InterPro:IPR001650 InterPro:IPR006576
Pfam:PF00176 Pfam:PF00271 Pfam:PF07533 PROSITE:PS00690
PROSITE:PS50013 PROSITE:PS51194 SMART:SM00298 SMART:SM00490
SMART:SM00592 MGI:MGI:1915022 Pfam:PF00385 GO:GO:0005524
GO:GO:0045892 GO:GO:0043066 GO:GO:0003677 GO:GO:0001701
GO:GO:0045944 GO:GO:0006351 GO:GO:0035064 GO:GO:0008013
GO:GO:0045945 GO:GO:0030178 GO:GO:0060070 InterPro:IPR016197
SUPFAM:SSF54160 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0003678 GO:GO:0043044 GO:GO:0071339
InterPro:IPR023780 PROSITE:PS00598 GO:GO:0008094
HOGENOM:HOG000246942 GeneTree:ENSGT00560000077077
HOVERGEN:HBG107676 OrthoDB:EOG4ZPDTC CTD:57680 KO:K04494
OMA:FLAYMED EMBL:DQ190419 EMBL:AY863219 EMBL:AK129393 EMBL:AK160299
IPI:IPI00858099 IPI:IPI00923681 RefSeq:NP_963999.2
UniGene:Mm.289934 ProteinModelPortal:Q09XV5 SMR:Q09XV5
IntAct:Q09XV5 STRING:Q09XV5 PhosphoSite:Q09XV5 PaxDb:Q09XV5
PRIDE:Q09XV5 Ensembl:ENSMUST00000089752 GeneID:67772 KEGG:mmu:67772
UCSC:uc007tot.1 UCSC:uc007tov.1 InParanoid:Q09XV5 ChiTaRS:CHD8
NextBio:325525 Bgee:Q09XV5 Genevestigator:Q09XV5 Uniprot:Q09XV5
Length = 2582
Score = 129 (50.5 bits), Expect = 2.8e-13, Sum P(2) = 2.8e-13
Identities = 31/85 (36%), Positives = 49/85 (57%)
Query: 24 EQVDQAKRIISPFMLRRLKKDVLTELPKKTALVIKVPMIPSQAEKYRGLME-DFKKTANP 82
EQV + + I+ P MLRRLK+DV L K +I+V + Q + YR ++E +F +
Sbjct: 1018 EQVQKLQAILKPMMLRRLKEDVEKNLAPKQETIIEVELTNIQKKYYRAILEKNFSFLS-- 1075
Query: 83 EGSNRSNEISHMSMFMMLRKMANHP 107
+G+ +N + ++ M LRK NHP
Sbjct: 1076 KGAGHTNMPNLLNTMMELRKCCNHP 1100
Score = 126 (49.4 bits), Expect = 2.8e-13, Sum P(2) = 2.8e-13
Identities = 27/61 (44%), Positives = 40/61 (65%)
Query: 173 LVVESGKLKKLDEILPDLKKNGHRVLIFSQFIFVLDILGHYMDIRGWRHLRLDGATQVSS 232
+V +GKL +D++LP LK GH+VLIFSQ + LDIL Y+ R + + R+DG + +
Sbjct: 1130 MVRSAGKLVLIDKLLPKLKAGGHKVLIFSQMVRCLDILEDYLIQRRYLYERIDGRVRGNL 1189
Query: 233 R 233
R
Sbjct: 1190 R 1190
Score = 38 (18.4 bits), Expect = 0.00032, Sum P(2) = 0.00032
Identities = 14/49 (28%), Positives = 23/49 (46%)
Query: 143 DISWLSDYDIHQLSLKHKTLDCAKYKVPDDLVVESGKLKKLDEILPDLK 191
DIS L D + Q K LD ++LV+++ +++K LK
Sbjct: 1367 DIS-LDDPNFWQKWAKKADLDMDLLNSKNNLVIDTPRVRKQTRHFSTLK 1414
Score = 38 (18.4 bits), Expect = 0.00074, Sum P(2) = 0.00074
Identities = 8/18 (44%), Positives = 11/18 (61%)
Query: 132 YKGTNP--QYILEDISWL 147
YK N +Y LE ++WL
Sbjct: 807 YKNRNQLREYQLEGVNWL 824
>UNIPROTKB|F1NVT7 [details] [associations]
symbol:CHD6 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS50013 PROSITE:PS51194
SMART:SM00298 SMART:SM00490 Pfam:PF00385 GO:GO:0005524
GO:GO:0005634 GO:GO:0003677 GO:GO:0004386 InterPro:IPR016197
SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
InterPro:IPR023780 GeneTree:ENSGT00560000077077 EMBL:AADN02019534
EMBL:AADN02019532 EMBL:AADN02019533 IPI:IPI00818616
Ensembl:ENSGALT00000040615 ArrayExpress:F1NVT7 Uniprot:F1NVT7
Length = 1257
Score = 130 (50.8 bits), Expect = 2.9e-13, Sum P(2) = 2.9e-13
Identities = 32/85 (37%), Positives = 49/85 (57%)
Query: 24 EQVDQAKRIISPFMLRRLKKDVLTELPKKTALVIKVPMIPSQAEKYRGLME-DFKKTANP 82
EQV + + I+ P MLRRLK DV L K +I+V + Q + YR ++E +F +
Sbjct: 588 EQVKKLQSILKPMMLRRLKDDVEKNLAPKQETIIEVELTNIQKKYYRAILEKNFSFLS-- 645
Query: 83 EGSNRSNEISHMSMFMMLRKMANHP 107
+G+N+ N + ++ M LRK NHP
Sbjct: 646 KGANQHNMPNLINTMMELRKCCNHP 670
Score = 118 (46.6 bits), Expect = 2.9e-13, Sum P(2) = 2.9e-13
Identities = 25/61 (40%), Positives = 39/61 (63%)
Query: 173 LVVESGKLKKLDEILPDLKKNGHRVLIFSQFIFVLDILGHYMDIRGWRHLRLDGATQVSS 232
++ +GKL +D++LP L GH+VLIFSQ + LDIL Y+ R + + R+DG + +
Sbjct: 700 MIQAAGKLVLIDKLLPKLIAGGHKVLIFSQMVRCLDILEDYLIQRRYTYERIDGRVRGNL 759
Query: 233 R 233
R
Sbjct: 760 R 760
Score = 45 (20.9 bits), Expect = 0.00028, Sum P(2) = 0.00028
Identities = 10/24 (41%), Positives = 17/24 (70%)
Query: 60 PMIPSQAEKYRGLMEDFKKTANPE 83
P + + AE+ ++EDF+KT +PE
Sbjct: 670 PYLINGAEEK--ILEDFRKTHSPE 691
>CGD|CAL0003962 [details] [associations]
symbol:orf19.239 species:5476 "Candida albicans" [GO:0016586
"RSC complex" evidence=IEA] [GO:0007059 "chromosome segregation"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0031055 "chromatin remodeling at
centromere" evidence=IEA] [GO:0006337 "nucleosome disassembly"
evidence=IEA] [GO:0016584 "nucleosome positioning" evidence=IEA]
[GO:0006302 "double-strand break repair" evidence=IEA] [GO:0006368
"transcription elongation from RNA polymerase II promoter"
evidence=IEA] [GO:0007126 "meiosis" evidence=IEA] [GO:0007010
"cytoskeleton organization" evidence=IEA] [GO:0043044
"ATP-dependent chromatin remodeling" evidence=IEA] [GO:0000086
"G2/M transition of mitotic cell cycle" evidence=IEA] [GO:0015616
"DNA translocase activity" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0070577 "histone acetyl-lysine binding"
evidence=IEA] InterPro:IPR000330 InterPro:IPR001487
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 Pfam:PF00439
PRINTS:PR00503 PROSITE:PS50014 PROSITE:PS51194 SMART:SM00297
SMART:SM00490 CGD:CAL0003962 GO:GO:0005524 GO:GO:0003677
GO:GO:0004386 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 Gene3D:1.20.920.10 SUPFAM:SSF47370
EMBL:AACQ01000027 EMBL:AACQ01000026 InterPro:IPR014012
PROSITE:PS51204 KO:K11786 RefSeq:XP_719938.1 RefSeq:XP_720068.1
ProteinModelPortal:Q5AEM9 STRING:Q5AEM9 GeneID:3638290
GeneID:3638351 KEGG:cal:CaO19.239 KEGG:cal:CaO19.7869
Uniprot:Q5AEM9
Length = 1303
Score = 140 (54.3 bits), Expect = 3.0e-13, Sum P(2) = 3.0e-13
Identities = 27/67 (40%), Positives = 45/67 (67%)
Query: 168 KVPDDLVVE-SGKLKKLDEILPDLKKNGHRVLIFSQFIFVLDILGHYMDIRGWRHLRLDG 226
++ +DL+ SGK + LD +LP KK+GHRVL+F Q ++DI+ ++ + ++LRLDG
Sbjct: 809 RLTNDLIWRVSGKFELLDRVLPKFKKSGHRVLMFFQMTQIMDIMEDFLRWKDMKYLRLDG 868
Query: 227 ATQVSSR 233
+T+ R
Sbjct: 869 STKAEER 875
Score = 106 (42.4 bits), Expect = 3.0e-13, Sum P(2) = 3.0e-13
Identities = 25/78 (32%), Positives = 41/78 (52%)
Query: 31 RIISPFMLRRLKKDVLTELPKKTALVIKVPMIPSQAEKYRGLMEDFKKTANPEGSNRSNE 90
+++ PF+LRRLKKDV +LP K V+K + Q Y+ +++ + +
Sbjct: 718 KVLRPFLLRRLKKDVEKDLPDKVEKVLKCNLSGLQYVLYQQMLKHNALFVGADVGGAKSG 777
Query: 91 ISHMS-MFMMLRKMANHP 107
I ++ M LRK+ NHP
Sbjct: 778 IKGLNNKIMQLRKICNHP 795
>FB|FBgn0086902 [details] [associations]
symbol:kis "kismet" species:7227 "Drosophila melanogaster"
[GO:0008026 "ATP-dependent helicase activity" evidence=ISS]
[GO:0005634 "nucleus" evidence=ISS;IDA] [GO:0007379 "segment
specification" evidence=IMP] [GO:0007350 "blastoderm segmentation"
evidence=IMP] [GO:0003677 "DNA binding" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0019730 "antimicrobial humoral
response" evidence=IMP] [GO:0007298 "border follicle cell
migration" evidence=IMP] [GO:0005875 "microtubule associated
complex" evidence=IDA] [GO:0007411 "axon guidance" evidence=IMP]
[GO:0016322 "neuron remodeling" evidence=IMP] [GO:0040011
"locomotion" evidence=IMP] [GO:0007614 "short-term memory"
evidence=IMP] [GO:0046622 "positive regulation of organ growth"
evidence=IMP] [GO:0045892 "negative regulation of transcription,
DNA-dependent" evidence=IMP] [GO:0007476 "imaginal disc-derived
wing morphogenesis" evidence=IMP] [GO:0007031 "peroxisome
organization" evidence=IMP] [GO:0008340 "determination of adult
lifespan" evidence=IMP] InterPro:IPR000330 InterPro:IPR000953
InterPro:IPR001650 InterPro:IPR006576 Pfam:PF00176 Pfam:PF00271
Pfam:PF07533 PROSITE:PS50013 PROSITE:PS51194 SMART:SM00298
SMART:SM00490 SMART:SM00592 Pfam:PF00385 GO:GO:0005524
GO:GO:0005634 GO:GO:0007411 GO:GO:0045892 GO:GO:0005875
EMBL:AE014134 GO:GO:0003677 GO:GO:0006200 GO:GO:0016322
GO:GO:0007031 GO:GO:0016887 GO:GO:0007298 GO:GO:0007614
GO:GO:0004386 GO:GO:0007379 GO:GO:0046622 GO:GO:0007476
GO:GO:0019730 InterPro:IPR016197 SUPFAM:SSF54160 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0007350 InterPro:IPR023780
KO:K14437 GeneTree:ENSGT00560000077077 RefSeq:NP_001137761.1
UniGene:Dm.3182 ProteinModelPortal:B7Z002 SMR:B7Z002 STRING:B7Z002
EnsemblMetazoa:FBtr0299837 GeneID:33185 KEGG:dme:Dmel_CG3696
CTD:33185 FlyBase:FBgn0086902 OMA:TTFEMIV OrthoDB:EOG4BZKHC
PhylomeDB:B7Z002 GenomeRNAi:33185 NextBio:782323 Bgee:B7Z002
Uniprot:B7Z002
Length = 5517
Score = 139 (54.0 bits), Expect = 3.0e-13, Sum P(2) = 3.0e-13
Identities = 39/110 (35%), Positives = 58/110 (52%)
Query: 117 NTLREIADCLVEDPTYKGTNPQYILEDISWLSDYDIHQLSLKHKTLDCAKYKVPDDLVVE 176
NT+ E+ C + +P Y+L YD +H + YK +L++
Sbjct: 2304 NTMMELRKCCI--------HP-YLLNGAEEQIQYDFKS---QHGEDPESYYK---NLILS 2348
Query: 177 SGKLKKLDEILPDLKKNGHRVLIFSQFIFVLDILGHYMDIRGWRHLRLDG 226
+GK+ +D++LP LK NGHRVLIFSQ + LDIL Y+ R + R+DG
Sbjct: 2349 AGKMVLIDKLLPKLKANGHRVLIFSQMVRCLDILEDYLVYRKYPFERIDG 2398
Score = 120 (47.3 bits), Expect = 3.0e-13, Sum P(2) = 3.0e-13
Identities = 29/84 (34%), Positives = 47/84 (55%)
Query: 24 EQVDQAKRIISPFMLRRLKKDVLTELPKKTALVIKVPMIPSQAEKYRGLMEDFKKTANPE 83
E+V++ + ++ P MLRRLK DV L K +I+V + Q + YRG++E + +
Sbjct: 2234 EEVNKLQALLKPMMLRRLKDDVEKSLAPKEETIIEVELTNIQKKYYRGILEQ-NFSFLKK 2292
Query: 84 GSNRSNEISHMSMFMMLRKMANHP 107
G+ +N + M+ M LRK HP
Sbjct: 2293 GTTSANIPNLMNTMMELRKCCIHP 2316
>ZFIN|ZDB-GENE-030131-5964 [details] [associations]
symbol:smarca2 "SWI/SNF related, matrix
associated, actin dependent regulator of chromatin, subfamily a,
member 2" species:7955 "Danio rerio" [GO:0016817 "hydrolase
activity, acting on acid anhydrides" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0016818 "hydrolase activity, acting on acid
anhydrides, in phosphorus-containing anhydrides" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001487 InterPro:IPR001650
InterPro:IPR006576 InterPro:IPR014978 Pfam:PF00176 Pfam:PF00271
Pfam:PF00439 Pfam:PF07533 Pfam:PF08880 PRINTS:PR00503
PROSITE:PS50014 PROSITE:PS51194 SMART:SM00297 SMART:SM00490
SMART:SM00592 SMART:SM00951 ZFIN:ZDB-GENE-030131-5964 GO:GO:0005524
GO:GO:0005634 GO:GO:0006355 GO:GO:0003677 GO:GO:0004386
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 Gene3D:1.20.920.10
SUPFAM:SSF47370 PROSITE:PS00633 InterPro:IPR018359 KO:K11647
InterPro:IPR013999 InterPro:IPR014012 InterPro:IPR006562
Pfam:PF07529 SMART:SM00573 PROSITE:PS51204 CTD:6595
HOVERGEN:HBG056636 EMBL:BC060676 IPI:IPI00483012 RefSeq:NP_997881.1
UniGene:Dr.93531 ProteinModelPortal:Q6P9P2 SMR:Q6P9P2 STRING:Q6P9P2
GeneID:334032 KEGG:dre:334032 InParanoid:Q6P9P2 NextBio:20810237
ArrayExpress:Q6P9P2 Uniprot:Q6P9P2
Length = 1568
Score = 133 (51.9 bits), Expect = 3.3e-13, Sum P(2) = 3.3e-13
Identities = 29/62 (46%), Positives = 36/62 (58%)
Query: 172 DLVVESGKLKKLDEILPDLKKNGHRVLIFSQFIFVLDILGHYMDIRGWRHLRLDGATQVS 231
DL SGK + LD ILP LK HRVL+F Q ++ IL Y R + +LRLDG T+
Sbjct: 1046 DLYRASGKFELLDRILPKLKATNHRVLLFCQMTSLMTILEDYFGYRNFLYLRLDGTTKSE 1105
Query: 232 SR 233
R
Sbjct: 1106 DR 1107
Score = 116 (45.9 bits), Expect = 3.3e-13, Sum P(2) = 3.3e-13
Identities = 31/90 (34%), Positives = 48/90 (53%)
Query: 31 RIISPFMLRRLKKDVLTELPKKTALVIKVPMIPSQAEKYR-----GLMEDFKKTANPEGS 85
+++ PF+LRRLKK+V ++LP+K VIK M Q YR G++ + +G
Sbjct: 942 KVLRPFLLRRLKKEVESQLPEKVEYVIKCDMSAIQKVLYRHMQGKGILLTDGSEKDKKGK 1001
Query: 86 NRSNEISHMSMFMMLRKMANHPLGLRYYFQ 115
+ + M+ M L+K+ NHP Y FQ
Sbjct: 1002 GGAKTL--MNTIMQLKKICNHP----YMFQ 1025
>MGI|MGI:1935127 [details] [associations]
symbol:Smarca1 "SWI/SNF related, matrix associated, actin
dependent regulator of chromatin, subfamily a, member 1"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000733 "DNA strand renaturation" evidence=ISO]
[GO:0000790 "nuclear chromatin" evidence=IDA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0003682 "chromatin binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=ISO] [GO:0006338 "chromatin
remodeling" evidence=ISO] [GO:0006351 "transcription,
DNA-dependent" evidence=ISO] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=TAS] [GO:0007420 "brain
development" evidence=ISO;IMP] [GO:0016568 "chromatin modification"
evidence=IEA] [GO:0016589 "NURF complex" evidence=ISO] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0016817 "hydrolase activity,
acting on acid anhydrides" evidence=IEA] [GO:0016818 "hydrolase
activity, acting on acid anhydrides, in phosphorus-containing
anhydrides" evidence=IEA] [GO:0030182 "neuron differentiation"
evidence=IMP] [GO:0031491 "nucleosome binding" evidence=IEA]
[GO:0036310 "annealing helicase activity" evidence=ISO] [GO:0043044
"ATP-dependent chromatin remodeling" evidence=ISO] [GO:0045893
"positive regulation of transcription, DNA-dependent" evidence=ISO]
[GO:0070615 "nucleosome-dependent ATPase activity" evidence=ISO]
[GO:0090537 "CERF complex" evidence=ISO] [GO:2000177 "regulation of
neural precursor cell proliferation" evidence=IGI;IMP]
InterPro:IPR000330 InterPro:IPR001005 InterPro:IPR001650
InterPro:IPR009057 InterPro:IPR015194 InterPro:IPR015195
InterPro:IPR020838 Pfam:PF00176 Pfam:PF00271 Pfam:PF09110
Pfam:PF09111 Pfam:PF13892 PROSITE:PS51194 SMART:SM00490
SMART:SM00717 MGI:MGI:1935127 GO:GO:0005524 GO:GO:0005634
GO:GO:0045893 GO:GO:0007420 GO:GO:0030182 GO:GO:0003677
GO:GO:0006351 Gene3D:1.10.10.60 SUPFAM:SSF46689 GO:GO:0006338
InterPro:IPR017884 PROSITE:PS51293 GO:GO:0004386 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0031491
GO:GO:0043044 GO:GO:0016589 GO:GO:0036310 GO:GO:0008094
GeneTree:ENSGT00680000100002 HOGENOM:HOG000192862 SUPFAM:SSF101224
CTD:6594 HOVERGEN:HBG056329 KO:K11727 EMBL:AF325920 EMBL:AK030741
EMBL:AL671903 EMBL:BC057115 IPI:IPI00314654 IPI:IPI00761324
RefSeq:NP_444353.3 UniGene:Mm.229151 HSSP:Q24368
ProteinModelPortal:Q6PGB8 SMR:Q6PGB8 STRING:Q6PGB8
PhosphoSite:Q6PGB8 PaxDb:Q6PGB8 PRIDE:Q6PGB8
Ensembl:ENSMUST00000077569 Ensembl:ENSMUST00000088973
Ensembl:ENSMUST00000101616 GeneID:93761 KEGG:mmu:93761
UCSC:uc009tbl.2 UCSC:uc009tbm.2 InParanoid:B1AUP6 OrthoDB:EOG44J2H9
NextBio:351647 Bgee:Q6PGB8 Genevestigator:Q6PGB8
GermOnline:ENSMUSG00000031099 Uniprot:Q6PGB8
Length = 1046
Score = 133 (51.9 bits), Expect = 3.4e-13, Sum P(2) = 3.4e-13
Identities = 30/67 (44%), Positives = 40/67 (59%)
Query: 167 YKVPDDLVVESGKLKKLDEILPDLKKNGHRVLIFSQFIFVLDILGHYMDIRGWRHLRLDG 226
Y + +V SGK+ LD++L +K+ G RVLIFSQ +LDIL Y RG+ + RLDG
Sbjct: 479 YTTDEHIVGNSGKMVALDKLLARIKEQGSRVLIFSQMTRLLDILEDYCMWRGYEYSRLDG 538
Query: 227 ATQVSSR 233
T R
Sbjct: 539 QTPHEER 545
Score = 112 (44.5 bits), Expect = 3.4e-13, Sum P(2) = 3.4e-13
Identities = 28/83 (33%), Positives = 46/83 (55%)
Query: 26 VDQAKRIISPFMLRRLKKDVLTELPKKTALVIKVPMIPSQAEKY-RGLMEDFKKTANPEG 84
V++ ++ PF+LRR+K DV LP K + I + + Q E Y + LM+D N G
Sbjct: 388 VERLHAVLKPFLLRRIKTDVEKSLPPKKEIKIYLGLSKMQREWYTKILMKDID-VLNSSG 446
Query: 85 SNRSNEISHMSMFMMLRKMANHP 107
+ +++ +++ M LRK NHP
Sbjct: 447 --KMDKMRLLNILMQLRKCCNHP 467
Score = 51 (23.0 bits), Expect = 6.6e-07, Sum P(2) = 6.6e-07
Identities = 13/60 (21%), Positives = 32/60 (53%)
Query: 18 QATFEVEQVDQAKRIISPFMLRRLKKDVLTEL---PKKTALVIKVPMIPSQAEKYRGLME 74
+ T E+ ++ ++I SPF L+ K +E P+ ++ +P+ +A+++ L++
Sbjct: 45 EGTTATEKGEKKEKITSPFQLKLAAKASKSEKEMDPEYEEKMVNMPLKADRAKRFEFLLK 104
>TAIR|locus:2116747 [details] [associations]
symbol:PKR2 "PICKLE RELATED 2" species:3702 "Arabidopsis
thaliana" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=ISM;IEA] InterPro:IPR000330
InterPro:IPR000953 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS50013 PROSITE:PS51194 SMART:SM00298 SMART:SM00490
Pfam:PF00385 GO:GO:0005524 GO:GO:0005634 EMBL:CP002687
GO:GO:0003677 GO:GO:0004386 InterPro:IPR016197 SUPFAM:SSF54160
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 InterPro:IPR023780
InterPro:IPR009462 InterPro:IPR009463 Pfam:PF06461 Pfam:PF06465
IPI:IPI00523018 RefSeq:NP_194918.2 UniGene:At.54572
ProteinModelPortal:F4JTF6 SMR:F4JTF6 PRIDE:F4JTF6
EnsemblPlants:AT4G31900.1 GeneID:829320 KEGG:ath:AT4G31900
OMA:SYWESES ArrayExpress:F4JTF6 Uniprot:F4JTF6
Length = 1202
Score = 124 (48.7 bits), Expect = 3.5e-13, Sum P(2) = 3.5e-13
Identities = 24/54 (44%), Positives = 36/54 (66%)
Query: 173 LVVESGKLKKLDEILPDLKKNGHRVLIFSQFIFVLDILGHYMDIRGWRHLRLDG 226
L+ SGKL+ LD+++ LK+ GHRVLI++QF L +L Y + W + R+DG
Sbjct: 519 LLEASGKLQLLDKMMVKLKEQGHRVLIYTQFQHTLYLLEDYFTFKNWNYERIDG 572
Score = 124 (48.7 bits), Expect = 3.5e-13, Sum P(2) = 3.5e-13
Identities = 30/102 (29%), Positives = 56/102 (54%)
Query: 7 DDARYEDKRKEQATFEVEQVDQAKRIISPFMLRRLKKDVLTE-LPKKTALVIKVPMIPSQ 65
D ++ K Q + EQ+ + ++++P +LRRLKKDVL + +P K L+++V M Q
Sbjct: 403 DADKFGSLEKFQDINKEEQISRLHQMLAPHLLRRLKKDVLKDKVPPKKELILRVDMSSQQ 462
Query: 66 AEKYRGLMEDFKKTANPEGSNRSNEISHMSMFMMLRKMANHP 107
E Y+ ++ T N + + + ++ M LR++ +HP
Sbjct: 463 KEVYKAVI-----TNNYQVLTKKRDAKISNVLMKLRQVCSHP 499
>MGI|MGI:1924001 [details] [associations]
symbol:Chd9 "chromodomain helicase DNA binding protein 9"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005575 "cellular_component" evidence=ND] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0008150 "biological_process" evidence=ND] [GO:0016568
"chromatin modification" evidence=IEA] [GO:0016787 "hydrolase
activity" evidence=IEA] [GO:0016817 "hydrolase activity, acting on
acid anhydrides" evidence=IEA] InterPro:IPR000330
InterPro:IPR000953 InterPro:IPR001650 InterPro:IPR006576
Pfam:PF00176 Pfam:PF00271 Pfam:PF07533 PROSITE:PS50013
PROSITE:PS51194 SMART:SM00298 SMART:SM00490 SMART:SM00592
MGI:MGI:1924001 Pfam:PF00385 GO:GO:0005524 GO:GO:0005634
GO:GO:0005737 GO:GO:0006355 GO:GO:0003677 GO:GO:0006351
GO:GO:0016568 GO:GO:0004386 InterPro:IPR016197 SUPFAM:SSF54160
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
InterPro:IPR023780 PROSITE:PS00598 HOVERGEN:HBG081150
HOGENOM:HOG000246942 GeneTree:ENSGT00560000077077 CTD:80205
KO:K14438 OMA:MWGHQTA EMBL:DQ127229 EMBL:AK034446 EMBL:AK039562
EMBL:AK084000 EMBL:AB093226 EMBL:BC052896 IPI:IPI00229650
IPI:IPI00758139 RefSeq:NP_796198.1 UniGene:Mm.100615
ProteinModelPortal:Q8BYH8 SMR:Q8BYH8 STRING:Q8BYH8
PhosphoSite:Q8BYH8 PaxDb:Q8BYH8 PRIDE:Q8BYH8
Ensembl:ENSMUST00000048665 Ensembl:ENSMUST00000109614 GeneID:109151
KEGG:mmu:109151 UCSC:uc009msf.2 UCSC:uc009msi.2 InParanoid:Q8BYH8
OrthoDB:EOG4548XQ ChiTaRS:CHD9 NextBio:361700 Bgee:Q8BYH8
CleanEx:MM_CHD9 Genevestigator:Q8BYH8 Uniprot:Q8BYH8
Length = 2885
Score = 133 (51.9 bits), Expect = 3.7e-13, Sum P(2) = 3.7e-13
Identities = 35/102 (34%), Positives = 58/102 (56%)
Query: 24 EQVDQAKRIISPFMLRRLKKDVLTELPKKTALVIKVPMIPSQAEKYRGLME-DFKKTANP 82
EQV + + I+ P MLRRLK+DV +L K +I+V + Q + YR ++E +F +
Sbjct: 1064 EQVQKLQAILKPMMLRRLKEDVEKKLAPKEETIIEVELTNIQKKYYRAILEKNFSFLS-- 1121
Query: 83 EGSNRSNEISHMSMFMMLRKMANHPLGLRYYFQENTLREIAD 124
+G+ ++N + ++ M LRK NHP ++ +E L E D
Sbjct: 1122 KGAGQTNVPNLVNTMMELRKCCNHPYLIKGA-EEKILGEFRD 1162
Score = 121 (47.7 bits), Expect = 3.7e-13, Sum P(2) = 3.7e-13
Identities = 24/61 (39%), Positives = 40/61 (65%)
Query: 173 LVVESGKLKKLDEILPDLKKNGHRVLIFSQFIFVLDILGHYMDIRGWRHLRLDGATQVSS 232
++ +GKL +D++LP +K GH+VLIFSQ + LDIL Y+ + + + R+DG + +
Sbjct: 1176 MIQSAGKLVLIDKLLPKMKAGGHKVLIFSQMVRCLDILEDYLIHKRYLYERIDGRVRGNL 1235
Query: 233 R 233
R
Sbjct: 1236 R 1236
Score = 39 (18.8 bits), Expect = 0.00010, Sum P(2) = 0.00010
Identities = 11/29 (37%), Positives = 13/29 (44%)
Query: 116 ENTLREIADCLVEDPTYKGTNPQYILEDI 144
E + D VEDP YK P +DI
Sbjct: 1720 EQRANDYMDGDVEDPEYKPA-PAIFKDDI 1747
>TAIR|locus:2040184 [details] [associations]
symbol:PKL "PICKLE" species:3702 "Arabidopsis thaliana"
[GO:0003674 "molecular_function" evidence=ND] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA;ISS] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM;IEA;IDA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0003678 "DNA helicase activity" evidence=ISS] [GO:0016568
"chromatin modification" evidence=ISS] [GO:0016887 "ATPase
activity" evidence=ISS] [GO:0045892 "negative regulation of
transcription, DNA-dependent" evidence=IMP] [GO:0009736 "cytokinin
mediated signaling pathway" evidence=IMP] [GO:0009733 "response to
auxin stimulus" evidence=IMP] [GO:2000023 "regulation of lateral
root development" evidence=IMP] [GO:0009788 "negative regulation of
abscisic acid mediated signaling pathway" evidence=IMP] [GO:0006346
"methylation-dependent chromatin silencing" evidence=RCA]
[GO:0016246 "RNA interference" evidence=RCA] [GO:0008283 "cell
proliferation" evidence=IMP] [GO:0009739 "response to gibberellin
stimulus" evidence=IMP] [GO:0048364 "root development"
evidence=IMP] InterPro:IPR001841 InterPro:IPR000330
InterPro:IPR000953 InterPro:IPR001650 InterPro:IPR001965
InterPro:IPR019787 Pfam:PF00176 Pfam:PF00271 Pfam:PF00628
PROSITE:PS50013 PROSITE:PS50016 PROSITE:PS50089 PROSITE:PS51194
SMART:SM00184 SMART:SM00249 SMART:SM00298 SMART:SM00490
Pfam:PF00385 Prosite:PS00518 GO:GO:0005524 GO:GO:0005634
GO:GO:0045892 EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0009733
GO:GO:0046872 GO:GO:0003677 GO:GO:0008283 GO:GO:0008270
GO:GO:0016568 GO:GO:0048364 GO:GO:0009739 GO:GO:0009788
GO:GO:0009736 Gene3D:3.30.40.10 InterPro:IPR011011
InterPro:IPR013083 SUPFAM:SSF57903 GO:GO:0004386 InterPro:IPR019786
PROSITE:PS01359 InterPro:IPR016197 SUPFAM:SSF54160 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 InterPro:IPR023780
PROSITE:PS00598 HOGENOM:HOG000231124 InterPro:IPR009462
InterPro:IPR009463 Pfam:PF06461 Pfam:PF06465 KO:K11643
EMBL:AF185578 EMBL:AF185577 EMBL:AK229409 IPI:IPI00521160
PIR:T52301 RefSeq:NP_565587.1 UniGene:At.11745
ProteinModelPortal:Q9S775 SMR:Q9S775 STRING:Q9S775 PaxDb:Q9S775
PRIDE:Q9S775 EnsemblPlants:AT2G25170.1 GeneID:817055
KEGG:ath:AT2G25170 TAIR:At2g25170 InParanoid:Q9S775 OMA:NVVMYFG
PhylomeDB:Q9S775 ProtClustDB:CLSN2688404 Genevestigator:Q9S775
GermOnline:AT2G25170 GO:GO:2000023 Uniprot:Q9S775
Length = 1384
Score = 125 (49.1 bits), Expect = 3.7e-13, Sum P(2) = 3.7e-13
Identities = 25/54 (46%), Positives = 40/54 (74%)
Query: 174 VVES-GKLKKLDEILPDLKKNGHRVLIFSQFIFVLDILGHYMDIRGWRHLRLDG 226
++ES GKL+ LD+++ LK+ GHRVLI++QF +LD+L Y + W++ R+DG
Sbjct: 590 LLESCGKLQLLDKMMVKLKEQGHRVLIYTQFQHMLDLLEDYCTHKKWQYERIDG 643
Score = 124 (48.7 bits), Expect = 3.7e-13, Sum P(2) = 3.7e-13
Identities = 26/84 (30%), Positives = 49/84 (58%)
Query: 24 EQVDQAKRIISPFMLRRLKKDVLTELPKKTALVIKVPMIPSQAEKYRGLMEDFKKTANPE 83
EQ+ + ++++P +LRR+KKDV+ ++P K L+++V + Q E Y+ + + +
Sbjct: 490 EQISRLHKMLAPHLLRRVKKDVMKDMPPKKELILRVDLSSLQKEYYKAIFTRNYQVLTKK 549
Query: 84 GSNRSNEISHMSMFMMLRKMANHP 107
G +IS ++ M LRK+ HP
Sbjct: 550 GGA---QISLNNIMMELRKVCCHP 570
>UNIPROTKB|Q3L8U1 [details] [associations]
symbol:CHD9 "Chromodomain-helicase-DNA-binding protein 9"
species:9606 "Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0016568 "chromatin modification"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0005654
"nucleoplasm" evidence=TAS] [GO:0044255 "cellular lipid metabolic
process" evidence=TAS] [GO:0044281 "small molecule metabolic
process" evidence=TAS] [GO:0005515 "protein binding" evidence=IPI]
Reactome:REACT_111217 InterPro:IPR000330 InterPro:IPR000953
InterPro:IPR001650 InterPro:IPR006576 Pfam:PF00176 Pfam:PF00271
Pfam:PF07533 PROSITE:PS50013 PROSITE:PS51194 SMART:SM00298
SMART:SM00490 SMART:SM00592 Pfam:PF00385 GO:GO:0005524
GO:GO:0005737 GO:GO:0005654 GO:GO:0006355 GO:GO:0044281
GO:GO:0003677 GO:GO:0044255 GO:GO:0006351 GO:GO:0016568
GO:GO:0004386 InterPro:IPR016197 SUPFAM:SSF54160 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 InterPro:IPR023780
PROSITE:PS00598 HOVERGEN:HBG081150 EMBL:AY243500 EMBL:DQ333316
EMBL:AY647157 EMBL:AC007906 EMBL:AC079416 EMBL:BC140815
EMBL:AB002306 EMBL:AF150735 EMBL:AK022582 IPI:IPI00383105
IPI:IPI00746795 IPI:IPI00914955 RefSeq:NP_079410.4 UniGene:Hs.59159
UniGene:Hs.622347 ProteinModelPortal:Q3L8U1 SMR:Q3L8U1
IntAct:Q3L8U1 STRING:Q3L8U1 PhosphoSite:Q3L8U1 DMDM:215273951
PaxDb:Q3L8U1 PRIDE:Q3L8U1 Ensembl:ENST00000398510
Ensembl:ENST00000447540 Ensembl:ENST00000564845
Ensembl:ENST00000566029 GeneID:80205 KEGG:hsa:80205 UCSC:uc002egy.3
UCSC:uc002ehb.3 UCSC:uc002ehc.3 CTD:80205 GeneCards:GC16P053041
HGNC:HGNC:25701 neXtProt:NX_Q3L8U1 PharmGKB:PA128394727
InParanoid:Q3L8U1 KO:K14438 OMA:MWGHQTA GenomeRNAi:80205
NextBio:70576 ArrayExpress:Q3L8U1 Bgee:Q3L8U1 CleanEx:HS_CHD9
Genevestigator:Q3L8U1 GermOnline:ENSG00000177200 Uniprot:Q3L8U1
Length = 2897
Score = 133 (51.9 bits), Expect = 3.7e-13, Sum P(2) = 3.7e-13
Identities = 35/102 (34%), Positives = 58/102 (56%)
Query: 24 EQVDQAKRIISPFMLRRLKKDVLTELPKKTALVIKVPMIPSQAEKYRGLME-DFKKTANP 82
EQV + + I+ P MLRRLK+DV +L K +I+V + Q + YR ++E +F +
Sbjct: 1065 EQVQKLQAILKPMMLRRLKEDVEKKLAPKEETIIEVELTNIQKKYYRAILEKNFSFLS-- 1122
Query: 83 EGSNRSNEISHMSMFMMLRKMANHPLGLRYYFQENTLREIAD 124
+G+ ++N + ++ M LRK NHP ++ +E L E D
Sbjct: 1123 KGAGQTNVPNLVNTMMELRKCCNHPYLIKGA-EEKILGEFRD 1163
Score = 121 (47.7 bits), Expect = 3.7e-13, Sum P(2) = 3.7e-13
Identities = 24/61 (39%), Positives = 40/61 (65%)
Query: 173 LVVESGKLKKLDEILPDLKKNGHRVLIFSQFIFVLDILGHYMDIRGWRHLRLDGATQVSS 232
++ +GKL +D++LP +K GH+VLIFSQ + LDIL Y+ + + + R+DG + +
Sbjct: 1177 MIQSAGKLVLIDKLLPKMKAGGHKVLIFSQMVRCLDILEDYLIHKRYLYERIDGRVRGNL 1236
Query: 233 R 233
R
Sbjct: 1237 R 1237
Score = 39 (18.8 bits), Expect = 0.00010, Sum P(2) = 0.00010
Identities = 11/29 (37%), Positives = 13/29 (44%)
Query: 116 ENTLREIADCLVEDPTYKGTNPQYILEDI 144
E + D VEDP YK P +DI
Sbjct: 1721 EQRANDYMDGDVEDPEYKPA-PAIFKDDI 1748
>UNIPROTKB|E1BDZ3 [details] [associations]
symbol:CHD9 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0005634 "nucleus" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001650
InterPro:IPR006576 Pfam:PF00176 Pfam:PF00271 Pfam:PF07533
PROSITE:PS50013 PROSITE:PS51194 SMART:SM00298 SMART:SM00490
SMART:SM00592 Pfam:PF00385 GO:GO:0005524 GO:GO:0005634
GO:GO:0003677 GO:GO:0004386 InterPro:IPR016197 SUPFAM:SSF54160
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 InterPro:IPR023780
GeneTree:ENSGT00560000077077 OMA:MWGHQTA EMBL:DAAA02046444
IPI:IPI00705152 Ensembl:ENSBTAT00000002955 Uniprot:E1BDZ3
Length = 2900
Score = 133 (51.9 bits), Expect = 3.7e-13, Sum P(2) = 3.7e-13
Identities = 35/102 (34%), Positives = 58/102 (56%)
Query: 24 EQVDQAKRIISPFMLRRLKKDVLTELPKKTALVIKVPMIPSQAEKYRGLME-DFKKTANP 82
EQV + + I+ P MLRRLK+DV +L K +I+V + Q + YR ++E +F +
Sbjct: 1066 EQVQKLQAILKPMMLRRLKEDVEKKLAPKEETIIEVELTNIQKKYYRAILEKNFSFLS-- 1123
Query: 83 EGSNRSNEISHMSMFMMLRKMANHPLGLRYYFQENTLREIAD 124
+G+ ++N + ++ M LRK NHP ++ +E L E D
Sbjct: 1124 KGAGQTNVPNLVNTMMELRKCCNHPYLIKGA-EEKILGEFRD 1164
Score = 121 (47.7 bits), Expect = 3.7e-13, Sum P(2) = 3.7e-13
Identities = 24/61 (39%), Positives = 40/61 (65%)
Query: 173 LVVESGKLKKLDEILPDLKKNGHRVLIFSQFIFVLDILGHYMDIRGWRHLRLDGATQVSS 232
++ +GKL +D++LP +K GH+VLIFSQ + LDIL Y+ + + + R+DG + +
Sbjct: 1178 MIQSAGKLVLIDKLLPKMKAGGHKVLIFSQMVRCLDILEDYLIHKRYLYERIDGRVRGNL 1237
Query: 233 R 233
R
Sbjct: 1238 R 1238
Score = 39 (18.8 bits), Expect = 0.00010, Sum P(2) = 0.00010
Identities = 11/29 (37%), Positives = 13/29 (44%)
Query: 116 ENTLREIADCLVEDPTYKGTNPQYILEDI 144
E + D VEDP YK P +DI
Sbjct: 1722 EQRANDYMDGDVEDPEYKPA-PAIFKDDI 1749
>UNIPROTKB|E2RDK8 [details] [associations]
symbol:CHD9 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005634 "nucleus" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001650
InterPro:IPR006576 Pfam:PF00176 Pfam:PF00271 Pfam:PF07533
PROSITE:PS50013 PROSITE:PS51194 SMART:SM00298 SMART:SM00490
SMART:SM00592 Pfam:PF00385 GO:GO:0005524 GO:GO:0005634
GO:GO:0003677 GO:GO:0004386 InterPro:IPR016197 SUPFAM:SSF54160
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 InterPro:IPR023780
GeneTree:ENSGT00560000077077 OMA:MWGHQTA EMBL:AAEX03001603
EMBL:AAEX03001604 EMBL:AAEX03001605 Ensembl:ENSCAFT00000015413
Uniprot:E2RDK8
Length = 2902
Score = 133 (51.9 bits), Expect = 3.7e-13, Sum P(2) = 3.7e-13
Identities = 35/102 (34%), Positives = 58/102 (56%)
Query: 24 EQVDQAKRIISPFMLRRLKKDVLTELPKKTALVIKVPMIPSQAEKYRGLME-DFKKTANP 82
EQV + + I+ P MLRRLK+DV +L K +I+V + Q + YR ++E +F +
Sbjct: 1067 EQVQKLQAILKPMMLRRLKEDVEKKLAPKEETIIEVELTNIQKKYYRAILEKNFSFLS-- 1124
Query: 83 EGSNRSNEISHMSMFMMLRKMANHPLGLRYYFQENTLREIAD 124
+G+ ++N + ++ M LRK NHP ++ +E L E D
Sbjct: 1125 KGAGQTNVPNLVNTMMELRKCCNHPYLIKGA-EEKILGEFRD 1165
Score = 121 (47.7 bits), Expect = 3.7e-13, Sum P(2) = 3.7e-13
Identities = 24/61 (39%), Positives = 40/61 (65%)
Query: 173 LVVESGKLKKLDEILPDLKKNGHRVLIFSQFIFVLDILGHYMDIRGWRHLRLDGATQVSS 232
++ +GKL +D++LP +K GH+VLIFSQ + LDIL Y+ + + + R+DG + +
Sbjct: 1179 MIQSAGKLVLIDKLLPKMKAGGHKVLIFSQMVRCLDILEDYLIHKRYLYERIDGRVRGNL 1238
Query: 233 R 233
R
Sbjct: 1239 R 1239
Score = 39 (18.8 bits), Expect = 0.00010, Sum P(2) = 0.00010
Identities = 11/29 (37%), Positives = 13/29 (44%)
Query: 116 ENTLREIADCLVEDPTYKGTNPQYILEDI 144
E + D VEDP YK P +DI
Sbjct: 1723 EQRANDYMDGDVEDPEYKPA-PAIFKDDI 1750
>ZFIN|ZDB-GENE-030605-1 [details] [associations]
symbol:smarca4 "SWI/SNF related, matrix associated,
actin dependent regulator of chromatin, subfamily a, member 4"
species:7955 "Danio rerio" [GO:0016817 "hydrolase activity, acting
on acid anhydrides" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0016818 "hydrolase activity, acting on acid anhydrides, in
phosphorus-containing anhydrides" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0031101 "fin regeneration" evidence=IMP] [GO:0003407 "neural
retina development" evidence=IMP] [GO:0007417 "central nervous
system development" evidence=IMP] [GO:0014032 "neural crest cell
development" evidence=IMP] [GO:0060059 "embryonic retina
morphogenesis in camera-type eye" evidence=IMP] [GO:0010842 "retina
layer formation" evidence=IMP] [GO:0021634 "optic nerve formation"
evidence=IMP] [GO:0030182 "neuron differentiation" evidence=IMP]
[GO:0060973 "cell migration involved in heart development"
evidence=IMP] [GO:0001947 "heart looping" evidence=IMP] [GO:0060038
"cardiac muscle cell proliferation" evidence=IMP] [GO:0048596
"embryonic camera-type eye morphogenesis" evidence=IMP] [GO:0000185
"activation of MAPKKK activity" evidence=IMP] InterPro:IPR000330
InterPro:IPR001487 InterPro:IPR001650 InterPro:IPR006576
InterPro:IPR014978 Pfam:PF00176 Pfam:PF00271 Pfam:PF00439
Pfam:PF07533 Pfam:PF08880 PRINTS:PR00503 PROSITE:PS50014
PROSITE:PS51194 SMART:SM00297 SMART:SM00490 SMART:SM00592
SMART:SM00951 ZFIN:ZDB-GENE-030605-1 GO:GO:0005524 GO:GO:0005634
GO:GO:0006355 GO:GO:0030182 GO:GO:0003677 GO:GO:0007417
GO:GO:0004386 GO:GO:0001947 GO:GO:0010842 GO:GO:0014032
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
Gene3D:1.20.920.10 SUPFAM:SSF47370 PROSITE:PS00633
InterPro:IPR018359 GO:GO:0031101 GO:GO:0060038 GO:GO:0048596
KO:K11647 GeneTree:ENSGT00550000074659 InterPro:IPR013999
InterPro:IPR014012 InterPro:IPR006562 Pfam:PF07529 SMART:SM00573
PROSITE:PS51204 GO:GO:0060059 GO:GO:0000185 HOGENOM:HOG000172363
HOVERGEN:HBG056636 CTD:6597 OMA:HKPMESM EMBL:BX322663 EMBL:BC163918
EMBL:BC163920 EMBL:AY205256 EMBL:AY218841 IPI:IPI00493397
RefSeq:NP_853634.1 UniGene:Dr.2414 SMR:Q7ZSY3 STRING:Q7ZSY3
Ensembl:ENSDART00000115110 Ensembl:ENSDART00000134514 GeneID:353295
KEGG:dre:353295 InParanoid:Q7ZSY3 NextBio:20812727 GO:GO:0060973
GO:GO:0021634 Uniprot:Q7ZSY3
Length = 1627
Score = 130 (50.8 bits), Expect = 5.4e-13, Sum P(3) = 5.4e-13
Identities = 26/62 (41%), Positives = 37/62 (59%)
Query: 172 DLVVESGKLKKLDEILPDLKKNGHRVLIFSQFIFVLDILGHYMDIRGWRHLRLDGATQVS 231
DL SGK + LD ILP L+ H+VL+F Q ++ I+ Y R +++LRLDG T+
Sbjct: 1086 DLYRASGKFELLDRILPKLRATNHKVLLFCQMTTLMTIMEDYFAYRNFKYLRLDGTTKAE 1145
Query: 232 SR 233
R
Sbjct: 1146 DR 1147
Score = 119 (46.9 bits), Expect = 5.4e-13, Sum P(3) = 5.4e-13
Identities = 33/90 (36%), Positives = 47/90 (52%)
Query: 31 RIISPFMLRRLKKDVLTELPKKTALVIKVPMIPSQAEKYRGLMEDFKKTANPEGSNRSNE 90
+++ PF+LRRLKK+V +LP+K VIK M Q YR + K +GS + +
Sbjct: 982 KVLRPFLLRRLKKEVEAQLPEKVEYVIKCDMSALQRVLYRHMQA--KGVLLTDGSEKDKK 1039
Query: 91 -----ISHMSMFMMLRKMANHPLGLRYYFQ 115
+ M+ M LRK+ NHP Y FQ
Sbjct: 1040 GKGGTKTLMNTIMQLRKICNHP----YMFQ 1065
Score = 43 (20.2 bits), Expect = 0.00056, Sum P(3) = 0.00056
Identities = 10/24 (41%), Positives = 16/24 (66%)
Query: 156 SLKHKTLDCAKYKVP-DDLVVESG 178
S++ K L AKYK+ D V+++G
Sbjct: 1221 SVEEKILAAAKYKLNVDQKVIQAG 1244
Score = 38 (18.4 bits), Expect = 5.4e-13, Sum P(3) = 5.4e-13
Identities = 9/31 (29%), Positives = 16/31 (51%)
Query: 3 SDSEDDARYEDKRKEQATFEVEQVDQAKRII 33
SDSED E++ E+ + + K++I
Sbjct: 673 SDSEDSGSDEEEDDEEEPQPSQAPTEEKKVI 703
>WB|WBGene00010369 [details] [associations]
symbol:chd-1 species:6239 "Caenorhabditis elegans"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0009792 "embryo development ending in
birth or egg hatching" evidence=IMP] InterPro:IPR000330
InterPro:IPR000953 InterPro:IPR001650 InterPro:IPR002464
Pfam:PF00176 Pfam:PF00271 PROSITE:PS00690 PROSITE:PS50013
PROSITE:PS51194 SMART:SM00298 SMART:SM00490 Pfam:PF00385
GO:GO:0005524 GO:GO:0005634 GO:GO:0009792 GO:GO:0003677
InterPro:IPR016197 SUPFAM:SSF54160 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR023780 InterPro:IPR023779 PROSITE:PS00598
InterPro:IPR025260 Pfam:PF13907 GeneTree:ENSGT00560000076896
KO:K11367 HOGENOM:HOG000207917 OMA:VERVIKW EMBL:Z92970 PIR:T23056
RefSeq:NP_491994.2 ProteinModelPortal:O17909 SMR:O17909
STRING:O17909 PaxDb:O17909 EnsemblMetazoa:H06O01.2 GeneID:172432
KEGG:cel:CELE_H06O01.2 UCSC:H06O01.2 CTD:172432 WormBase:H06O01.2
InParanoid:O17909 NextBio:875487 Uniprot:O17909
Length = 1461
Score = 138 (53.6 bits), Expect = 6.9e-13, Sum P(2) = 6.9e-13
Identities = 30/61 (49%), Positives = 40/61 (65%)
Query: 173 LVVESGKLKKLDEILPDLKKNGHRVLIFSQFIFVLDILGHYMDIRGWRHLRLDGATQVSS 232
L+ SGKL LD++L LK GHRVLIFSQ + +LDIL Y+ +R + RLDG+ +
Sbjct: 706 LLKSSGKLILLDKLLCRLKDKGHRVLIFSQMVMMLDILQEYLQLRRFPSQRLDGSMRADL 765
Query: 233 R 233
R
Sbjct: 766 R 766
Score = 106 (42.4 bits), Expect = 6.9e-13, Sum P(2) = 6.9e-13
Identities = 26/82 (31%), Positives = 47/82 (57%)
Query: 33 ISPFMLRRLKKDVLTELPKKTALVIKVPMIPSQAEKYRGLM-EDFKKTANPEGSNRSNEI 91
+ PF+LRR+KKDV LP KT +++V M Q + Y+ ++ +++++ + +G S
Sbjct: 614 LEPFLLRRVKKDVEKSLPPKTEQILRVDMTAHQKQFYKWILTKNYRELS--KGVKGSIN- 670
Query: 92 SHMSMFMMLRKMANHPLGLRYY 113
+++ M L+K NH R Y
Sbjct: 671 GFVNLVMELKKCCNHASLTRQY 692
Score = 56 (24.8 bits), Expect = 1.0e-07, Sum P(2) = 1.0e-07
Identities = 14/41 (34%), Positives = 24/41 (58%)
Query: 5 SEDDARYEDKRKEQATFEVEQVDQAKRIISPFMLRRLKKDV 45
SEDD ++D+RK + T + V Q K+ +S + +K +V
Sbjct: 122 SEDD--WDDRRKPRRTVTKKVVKQTKKAVSVVKRKSVKGNV 160
Score = 38 (18.4 bits), Expect = 7.0e-06, Sum P(2) = 7.0e-06
Identities = 9/27 (33%), Positives = 14/27 (51%)
Query: 64 SQAEKYRGLMEDFKKTANPEGSNRSNE 90
S AE E ++ NPEG++ S +
Sbjct: 11 SDAEPDEKTDEPVREEENPEGNSTSED 37
>SGD|S000001388 [details] [associations]
symbol:STH1 "ATPase component of the RSC chromatin remodeling
complex" species:4932 "Saccharomyces cerevisiae" [GO:0005634
"nucleus" evidence=IEA;IDA] [GO:0007126 "meiosis" evidence=IMP]
[GO:0008094 "DNA-dependent ATPase activity" evidence=IDA]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA;IDA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA;IMP] [GO:0007049 "cell cycle"
evidence=IEA] [GO:0016568 "chromatin modification" evidence=IEA]
[GO:0016787 "hydrolase activity" evidence=IEA] [GO:0070577 "histone
acetyl-lysine binding" evidence=IDA] [GO:0006337 "nucleosome
disassembly" evidence=IDA] [GO:0016584 "nucleosome positioning"
evidence=IMP] [GO:0007010 "cytoskeleton organization"
evidence=IGI;IMP] [GO:0031055 "chromatin remodeling at centromere"
evidence=IMP] [GO:0007059 "chromosome segregation" evidence=IGI]
[GO:0016586 "RSC complex" evidence=IDA] [GO:0043044 "ATP-dependent
chromatin remodeling" evidence=IDA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0000086 "G2/M transition of mitotic cell cycle" evidence=IMP]
[GO:0006368 "transcription elongation from RNA polymerase II
promoter" evidence=IDA] [GO:0006302 "double-strand break repair"
evidence=IMP] [GO:0015616 "DNA translocase activity" evidence=IDA]
InterPro:IPR000330 InterPro:IPR001487 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 Pfam:PF00439 PRINTS:PR00503
PROSITE:PS50014 PROSITE:PS51194 SMART:SM00297 SMART:SM00490
SGD:S000001388 GO:GO:0005524 GO:GO:0007126 GO:GO:0000086
GO:GO:0007010 GO:GO:0007059 GO:GO:0000775 GO:GO:0006355
EMBL:BK006942 GO:GO:0006302 GO:GO:0004386 GO:GO:0006368
GO:GO:0006337 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0016586 GO:GO:0043044 GO:GO:0016584
EMBL:DQ115392 Gene3D:1.20.920.10 SUPFAM:SSF47370 PROSITE:PS00633
GO:GO:0070577 InterPro:IPR018359 EMBL:Z46833 InterPro:IPR014012
PROSITE:PS51204 GeneTree:ENSGT00670000098110 HOGENOM:HOG000172362
GO:GO:0015616 GO:GO:0031055 KO:K11786 OrthoDB:EOG4D565R EMBL:D10595
EMBL:M83755 PIR:S49883 RefSeq:NP_012140.1 ProteinModelPortal:P32597
SMR:P32597 DIP:DIP-5889N IntAct:P32597 MINT:MINT-615490
STRING:P32597 PaxDb:P32597 PeptideAtlas:P32597 EnsemblFungi:YIL126W
GeneID:854680 KEGG:sce:YIL126W CYGD:YIL126w OMA:MEDFLRM
NextBio:977286 Genevestigator:P32597 GermOnline:YIL126W
Uniprot:P32597
Length = 1359
Score = 130 (50.8 bits), Expect = 7.2e-13, Sum P(2) = 7.2e-13
Identities = 25/63 (39%), Positives = 42/63 (66%)
Query: 172 DLVVE-SGKLKKLDEILPDLKKNGHRVLIFSQFIFVLDILGHYMDIRGWRHLRLDGATQV 230
DL+ +GK + LD +LP K +GHRVL+F Q V+DI+ ++ ++ +++RLDG+T+
Sbjct: 784 DLLFRVAGKFELLDRVLPKFKASGHRVLMFFQMTQVMDIMEDFLRMKDLKYMRLDGSTKT 843
Query: 231 SSR 233
R
Sbjct: 844 EER 846
Score = 115 (45.5 bits), Expect = 7.2e-13, Sum P(2) = 7.2e-13
Identities = 27/79 (34%), Positives = 43/79 (54%)
Query: 31 RIISPFMLRRLKKDVLTELPKKTALVIKVPMIPSQAEKYRGLMED--FKKTANPEGSNRS 88
+++ PF+LRRLKK+V +LP K VIK + Q + Y+ +++ A EG+ +
Sbjct: 688 KVLRPFLLRRLKKEVEKDLPDKVEKVIKCKLSGLQQQLYQQMLKHNALFVGAGTEGATKG 747
Query: 89 NEISHMSMFMMLRKMANHP 107
+ M LRK+ NHP
Sbjct: 748 GIKGLNNKIMQLRKICNHP 766
Score = 38 (18.4 bits), Expect = 6.1e-05, Sum P(2) = 6.1e-05
Identities = 8/17 (47%), Positives = 12/17 (70%)
Query: 135 TNPQYILEDISWLSDYD 151
T +YI++D S LS +D
Sbjct: 574 TTYEYIIKDKSLLSKHD 590
>UNIPROTKB|F1NLW6 [details] [associations]
symbol:CHD6 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001650
InterPro:IPR006576 Pfam:PF00176 Pfam:PF00271 Pfam:PF07533
PROSITE:PS50013 PROSITE:PS51194 SMART:SM00298 SMART:SM00490
SMART:SM00592 Pfam:PF00385 GO:GO:0005524 GO:GO:0005634
GO:GO:0003677 GO:GO:0004386 InterPro:IPR016197 SUPFAM:SSF54160
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 InterPro:IPR023780
GeneTree:ENSGT00560000077077 EMBL:AADN02019534 EMBL:AADN02019532
EMBL:AADN02019533 IPI:IPI00572954 Ensembl:ENSGALT00000002030
ArrayExpress:F1NLW6 Uniprot:F1NLW6
Length = 2005
Score = 130 (50.8 bits), Expect = 8.2e-13, Sum P(2) = 8.2e-13
Identities = 32/85 (37%), Positives = 49/85 (57%)
Query: 24 EQVDQAKRIISPFMLRRLKKDVLTELPKKTALVIKVPMIPSQAEKYRGLME-DFKKTANP 82
EQV + + I+ P MLRRLK DV L K +I+V + Q + YR ++E +F +
Sbjct: 463 EQVKKLQSILKPMMLRRLKDDVEKNLAPKQETIIEVELTNIQKKYYRAILEKNFSFLS-- 520
Query: 83 EGSNRSNEISHMSMFMMLRKMANHP 107
+G+N+ N + ++ M LRK NHP
Sbjct: 521 KGANQHNMPNLINTMMELRKCCNHP 545
Score = 118 (46.6 bits), Expect = 8.2e-13, Sum P(2) = 8.2e-13
Identities = 25/61 (40%), Positives = 39/61 (63%)
Query: 173 LVVESGKLKKLDEILPDLKKNGHRVLIFSQFIFVLDILGHYMDIRGWRHLRLDGATQVSS 232
++ +GKL +D++LP L GH+VLIFSQ + LDIL Y+ R + + R+DG + +
Sbjct: 575 MIQAAGKLVLIDKLLPKLIAGGHKVLIFSQMVRCLDILEDYLIQRRYTYERIDGRVRGNL 634
Query: 233 R 233
R
Sbjct: 635 R 635
Score = 45 (20.9 bits), Expect = 0.00077, Sum P(2) = 0.00077
Identities = 10/24 (41%), Positives = 17/24 (70%)
Query: 60 PMIPSQAEKYRGLMEDFKKTANPE 83
P + + AE+ ++EDF+KT +PE
Sbjct: 545 PYLINGAEEK--ILEDFRKTHSPE 566
>UNIPROTKB|F1NLV5 [details] [associations]
symbol:CHD6 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001650
InterPro:IPR006576 Pfam:PF00176 Pfam:PF00271 Pfam:PF07533
PROSITE:PS50013 PROSITE:PS51194 SMART:SM00298 SMART:SM00490
SMART:SM00592 Pfam:PF00385 GO:GO:0005524 GO:GO:0005634
GO:GO:0003677 GO:GO:0004386 InterPro:IPR016197 SUPFAM:SSF54160
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 InterPro:IPR023780
OMA:CKWATME GeneTree:ENSGT00560000077077 EMBL:AADN02019534
EMBL:AADN02019532 EMBL:AADN02019533 IPI:IPI00588365
Ensembl:ENSGALT00000002034 ArrayExpress:F1NLV5 Uniprot:F1NLV5
Length = 2007
Score = 130 (50.8 bits), Expect = 8.3e-13, Sum P(2) = 8.3e-13
Identities = 32/85 (37%), Positives = 49/85 (57%)
Query: 24 EQVDQAKRIISPFMLRRLKKDVLTELPKKTALVIKVPMIPSQAEKYRGLME-DFKKTANP 82
EQV + + I+ P MLRRLK DV L K +I+V + Q + YR ++E +F +
Sbjct: 463 EQVKKLQSILKPMMLRRLKDDVEKNLAPKQETIIEVELTNIQKKYYRAILEKNFSFLS-- 520
Query: 83 EGSNRSNEISHMSMFMMLRKMANHP 107
+G+N+ N + ++ M LRK NHP
Sbjct: 521 KGANQHNMPNLINTMMELRKCCNHP 545
Score = 118 (46.6 bits), Expect = 8.3e-13, Sum P(2) = 8.3e-13
Identities = 25/61 (40%), Positives = 39/61 (63%)
Query: 173 LVVESGKLKKLDEILPDLKKNGHRVLIFSQFIFVLDILGHYMDIRGWRHLRLDGATQVSS 232
++ +GKL +D++LP L GH+VLIFSQ + LDIL Y+ R + + R+DG + +
Sbjct: 575 MIQAAGKLVLIDKLLPKLIAGGHKVLIFSQMVRCLDILEDYLIQRRYTYERIDGRVRGNL 634
Query: 233 R 233
R
Sbjct: 635 R 635
Score = 45 (20.9 bits), Expect = 0.00077, Sum P(2) = 0.00077
Identities = 10/24 (41%), Positives = 17/24 (70%)
Query: 60 PMIPSQAEKYRGLMEDFKKTANPE 83
P + + AE+ ++EDF+KT +PE
Sbjct: 545 PYLINGAEEK--ILEDFRKTHSPE 566
>DICTYBASE|DDB_G0285205 [details] [associations]
symbol:snf2a "SNF2-related protein SNF2a"
species:44689 "Dictyostelium discoideum" [GO:0005524 "ATP binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0044351 "macropinocytosis" evidence=RCA]
InterPro:IPR000330 InterPro:IPR001650 InterPro:IPR017956
Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194 SMART:SM00384
SMART:SM00490 dictyBase:DDB_G0285205 GO:GO:0005524 GO:GO:0003677
EMBL:AAFI02000075 GO:GO:0004386 eggNOG:COG0553 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 KO:K11647 InterPro:IPR014012
InterPro:IPR006562 Pfam:PF07529 PROSITE:PS51204 RefSeq:XP_638342.2
ProteinModelPortal:Q54NM0 STRING:Q54NM0 PRIDE:Q54NM0
EnsemblProtists:DDB0233441 GeneID:8624967 KEGG:ddi:DDB_G0285205
OMA:HASKHRV Uniprot:Q54NM0
Length = 1604
Score = 138 (53.6 bits), Expect = 8.5e-13, Sum P(2) = 8.5e-13
Identities = 27/75 (36%), Positives = 45/75 (60%)
Query: 159 HKTLDCAKYKVPDDLVVESGKLKKLDEILPDLKKNGHRVLIFSQFIFVLDILGHYMDIRG 218
H L ++ + +DL+ SGK +D+IL + + HRVLIF+Q V++++ Y ++
Sbjct: 919 HPYLFKDEWDINEDLIRTSGKFDTMDQILTKMHASKHRVLIFTQMTEVINLMEEYFSLKE 978
Query: 219 WRHLRLDGATQVSSR 233
W LRLDG+T+ R
Sbjct: 979 WTFLRLDGSTKPEER 993
Score = 106 (42.4 bits), Expect = 8.5e-13, Sum P(2) = 8.5e-13
Identities = 28/86 (32%), Positives = 45/86 (52%)
Query: 26 VDQAKRIISPFMLRRLKKDVLTELPKKTALVIKVPMIPSQAEKYRGLMEDFKKTANPEGS 85
+++ +++ F+LRRLK DV ++LP K VIK M Q YR L+E +P+
Sbjct: 835 INRLHQVLRFFLLRRLKSDVESQLPDKKEKVIKCNMSALQIAMYRSLVEYGVLPIDPDSK 894
Query: 86 N-RSNEISHM---SMFMMLRKMANHP 107
RS + ++ L+K+ NHP
Sbjct: 895 EGRSGRLKMKGFNNIVKQLQKICNHP 920
>RGD|1594200 [details] [associations]
symbol:LOC680231 "similar to chromodomain helicase DNA binding
protein 9" species:10116 "Rattus norvegicus" [GO:0003677 "DNA
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] InterPro:IPR000330 InterPro:IPR000953
InterPro:IPR001650 InterPro:IPR006576 Pfam:PF00176 Pfam:PF00271
Pfam:PF07533 PROSITE:PS50013 PROSITE:PS51194 SMART:SM00298
SMART:SM00490 SMART:SM00592 Pfam:PF00385 RGD:1594200 GO:GO:0005524
GO:GO:0005634 GO:GO:0003677 GO:GO:0004386 InterPro:IPR016197
SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
InterPro:IPR023780 OrthoDB:EOG4548XQ IPI:IPI00957597
Ensembl:ENSRNOT00000018201 Uniprot:D3ZVE2
Length = 2881
Score = 130 (50.8 bits), Expect = 8.7e-13, Sum P(2) = 8.7e-13
Identities = 34/102 (33%), Positives = 57/102 (55%)
Query: 24 EQVDQAKRIISPFMLRRLKKDVLTELPKKTALVIKVPMIPSQAEKYRGLME-DFKKTANP 82
EQV + + I+ P MLRRLK+DV L K +I+V + Q + YR ++E +F +
Sbjct: 1064 EQVQKLQAILKPMMLRRLKEDVEKRLAPKEETIIEVELTNIQKKYYRAILEKNFSFLS-- 1121
Query: 83 EGSNRSNEISHMSMFMMLRKMANHPLGLRYYFQENTLREIAD 124
+G+ ++N + ++ M LRK NHP ++ +E + E D
Sbjct: 1122 KGAGQTNVPNLVNTMMELRKCCNHPYLIKGA-EEKIIGEFRD 1162
Score = 121 (47.7 bits), Expect = 8.7e-13, Sum P(2) = 8.7e-13
Identities = 24/61 (39%), Positives = 40/61 (65%)
Query: 173 LVVESGKLKKLDEILPDLKKNGHRVLIFSQFIFVLDILGHYMDIRGWRHLRLDGATQVSS 232
++ +GKL +D++LP +K GH+VLIFSQ + LDIL Y+ + + + R+DG + +
Sbjct: 1176 MIQSAGKLVLIDKLLPKMKAGGHKVLIFSQMVRCLDILEDYLIHKRYLYERIDGRVRGNL 1235
Query: 233 R 233
R
Sbjct: 1236 R 1236
Score = 38 (18.4 bits), Expect = 0.00030, Sum P(2) = 0.00030
Identities = 10/29 (34%), Positives = 15/29 (51%)
Query: 116 ENTLREIADCLVEDPTYKGTNPQYILEDI 144
++ + +D VEDP YK P +DI
Sbjct: 1722 DHQVTSYSDRDVEDPEYKPA-PAIFKDDI 1749
>UNIPROTKB|I3LRQ2 [details] [associations]
symbol:CHD2 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005634 "nucleus" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS50013 PROSITE:PS51194
SMART:SM00298 SMART:SM00490 Pfam:PF00385 GO:GO:0005524
GO:GO:0005634 GO:GO:0003677 GO:GO:0004386 InterPro:IPR016197
SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
InterPro:IPR023780 InterPro:IPR023779 PROSITE:PS00598
GeneTree:ENSGT00560000076896 EMBL:CT954235 EMBL:CU466964
Ensembl:ENSSSCT00000027293 Uniprot:I3LRQ2
Length = 1051
Score = 128 (50.1 bits), Expect = 9.1e-13, Sum P(2) = 9.1e-13
Identities = 27/55 (49%), Positives = 39/55 (70%)
Query: 173 LVVESGKLKKLDEILPDLKKNGHRVLIFSQFIFVLDILGHYMDIRGWRHLRLDGA 227
L+ SGKL LD++L L++ G+RVLIFSQ + +LDIL Y+ I+ + RLDG+
Sbjct: 788 LIRSSGKLILLDKLLTRLRERGNRVLIFSQMVRMLDILAEYLTIKHYPFQRLDGS 842
Score = 114 (45.2 bits), Expect = 9.1e-13, Sum P(2) = 9.1e-13
Identities = 27/97 (27%), Positives = 51/97 (52%)
Query: 11 YEDKRKEQATFEVEQVDQAKRIISPFMLRRLKKDVLTELPKKTALVIKVPMIPSQAEKYR 70
+ED ++ +++ PF+LRR+KKDV LP K +++V M Q + Y+
Sbjct: 673 WEDFEEDHGKGRENGYQSLHKVLEPFLLRRVKKDVEKSLPAKVEQILRVEMSALQKQYYK 732
Query: 71 GLM-EDFKKTANPEGSNRSNEISHMSMFMMLRKMANH 106
++ ++K A +G+ R + +++ M L+K NH
Sbjct: 733 WILTRNYKALA--KGT-RGSTSGFLNIVMELKKCCNH 766
>UNIPROTKB|E2QVR5 [details] [associations]
symbol:SMARCA1 "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0043044 "ATP-dependent chromatin
remodeling" evidence=IEA] [GO:0031491 "nucleosome binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001005 InterPro:IPR001650
InterPro:IPR009057 InterPro:IPR015194 InterPro:IPR015195
InterPro:IPR020838 Pfam:PF00176 Pfam:PF00271 Pfam:PF09110
Pfam:PF09111 Pfam:PF13892 PROSITE:PS51194 SMART:SM00490
SMART:SM00717 GO:GO:0005524 GO:GO:0003677 Gene3D:1.10.10.60
SUPFAM:SSF46689 InterPro:IPR017884 PROSITE:PS51293 GO:GO:0004386
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0016585
GO:GO:0031491 GO:GO:0043044 SUPFAM:SSF101224
Ensembl:ENSCAFT00000029649 Uniprot:E2QVR5
Length = 1073
Score = 137 (53.3 bits), Expect = 9.6e-13, Sum P(2) = 9.6e-13
Identities = 31/67 (46%), Positives = 40/67 (59%)
Query: 167 YKVPDDLVVESGKLKKLDEILPDLKKNGHRVLIFSQFIFVLDILGHYMDIRGWRHLRLDG 226
Y + +V SGK+ LD++L LK+ G RVLIFSQ +LDIL Y RG+ + RLDG
Sbjct: 488 YTTDEHIVSNSGKMVVLDKLLAKLKEQGSRVLIFSQMTRLLDILEDYCMWRGYEYCRLDG 547
Query: 227 ATQVSSR 233
T R
Sbjct: 548 QTPHEER 554
Score = 103 (41.3 bits), Expect = 9.6e-13, Sum P(2) = 9.6e-13
Identities = 26/84 (30%), Positives = 46/84 (54%)
Query: 26 VDQAKRIISPFMLRRLKKDVLTELPKKTALVIKVPMIPSQAEKY--RGLMEDFKKTANPE 83
V++ ++ PF+LRR+K DV LP K + + + + Q E + + LM+D N
Sbjct: 396 VERLHAVLKPFLLRRIKTDVEKSLPPKKEIKVYLGLSKMQREWWYTKILMKDID-VLNSA 454
Query: 84 GSNRSNEISHMSMFMMLRKMANHP 107
G + +++ +++ M LRK NHP
Sbjct: 455 G--KMDKMRLLNILMQLRKCCNHP 476
>UNIPROTKB|F1P3Q4 [details] [associations]
symbol:SMARCA1 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0043044 "ATP-dependent chromatin remodeling"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0031491 "nucleosome binding" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0007420 "brain development" evidence=IEA] [GO:0008094
"DNA-dependent ATPase activity" evidence=IEA] [GO:0016589 "NURF
complex" evidence=IEA] [GO:0030182 "neuron differentiation"
evidence=IEA] [GO:0036310 "annealing helicase activity"
evidence=IEA] [GO:0045893 "positive regulation of transcription,
DNA-dependent" evidence=IEA] InterPro:IPR000330 InterPro:IPR001005
InterPro:IPR001650 InterPro:IPR009057 InterPro:IPR015194
InterPro:IPR015195 InterPro:IPR020838 Pfam:PF00176 Pfam:PF00271
Pfam:PF09110 Pfam:PF09111 Pfam:PF13892 PROSITE:PS51194
SMART:SM00490 SMART:SM00717 GO:GO:0005524 GO:GO:0045893
GO:GO:0003677 GO:GO:0006351 Gene3D:1.10.10.60 SUPFAM:SSF46689
InterPro:IPR017884 PROSITE:PS51293 GO:GO:0004386 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0031491 GO:GO:0043044
GO:GO:0016589 GO:GO:0008094 GeneTree:ENSGT00680000100002
SUPFAM:SSF101224 OMA:PMSQKRK EMBL:AADN02013587 EMBL:AADN02013588
IPI:IPI00594974 Ensembl:ENSGALT00000013737 Uniprot:F1P3Q4
Length = 982
Score = 132 (51.5 bits), Expect = 1.0e-12, Sum P(2) = 1.0e-12
Identities = 29/67 (43%), Positives = 39/67 (58%)
Query: 167 YKVPDDLVVESGKLKKLDEILPDLKKNGHRVLIFSQFIFVLDILGHYMDIRGWRHLRLDG 226
Y L+ SGK+ LD++L L++ G RVL+FSQ +LDIL Y RG+ + RLDG
Sbjct: 399 YTTDTHLITNSGKMLVLDKLLAKLREQGSRVLLFSQMTRLLDILEDYCMWRGYEYCRLDG 458
Query: 227 ATQVSSR 233
T R
Sbjct: 459 QTPHEER 465
Score = 108 (43.1 bits), Expect = 1.0e-12, Sum P(2) = 1.0e-12
Identities = 28/83 (33%), Positives = 46/83 (55%)
Query: 26 VDQAKRIISPFMLRRLKKDVLTELPKKTALVIKVPMIPSQAEKY-RGLMEDFKKTANPEG 84
V++ ++ PF+LRR+K +V LP K + I + + Q E Y R LM+D N G
Sbjct: 308 VERLHAVLKPFLLRRIKAEVEKSLPPKKEVKIYLGLSKMQREWYTRILMKDID-ILNSAG 366
Query: 85 SNRSNEISHMSMFMMLRKMANHP 107
+ +++ +++ M LRK NHP
Sbjct: 367 --KMDKMRLLNILMQLRKCCNHP 387
>TAIR|locus:2087780 [details] [associations]
symbol:PIE1 "PHOTOPERIOD-INDEPENDENT EARLY FLOWERING 1"
species:3702 "Arabidopsis thaliana" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA;ISS]
[GO:0004386 "helicase activity" evidence=IEA;ISS] [GO:0005524 "ATP
binding" evidence=IEA;ISS] [GO:0005634 "nucleus" evidence=ISM]
[GO:0009910 "negative regulation of flower development"
evidence=IGI] [GO:0016514 "SWI/SNF complex" evidence=ISS]
[GO:0048441 "petal development" evidence=IGI] [GO:0048451 "petal
formation" evidence=IGI;RCA] [GO:0005618 "cell wall" evidence=IDA]
[GO:0005515 "protein binding" evidence=IPI] [GO:0042742 "defense
response to bacterium" evidence=IGI;RCA] [GO:0046686 "response to
cadmium ion" evidence=IEP] [GO:0000278 "mitotic cell cycle"
evidence=RCA] [GO:0003002 "regionalization" evidence=RCA]
[GO:0006338 "chromatin remodeling" evidence=RCA] [GO:0007155 "cell
adhesion" evidence=RCA] [GO:0009793 "embryo development ending in
seed dormancy" evidence=RCA] [GO:0009909 "regulation of flower
development" evidence=RCA] [GO:0010090 "trichome morphogenesis"
evidence=RCA] [GO:0010228 "vegetative to reproductive phase
transition of meristem" evidence=RCA] [GO:0033043 "regulation of
organelle organization" evidence=RCA] [GO:0045010 "actin
nucleation" evidence=RCA] [GO:0048449 "floral organ formation"
evidence=RCA] [GO:0048453 "sepal formation" evidence=RCA]
[GO:0048765 "root hair cell differentiation" evidence=RCA]
[GO:0071555 "cell wall organization" evidence=RCA]
InterPro:IPR000330 InterPro:IPR001005 InterPro:IPR001650
InterPro:IPR009057 Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 SMART:SM00717 GO:GO:0005524 GO:GO:0005618
GO:GO:0046686 EMBL:CP002686 GO:GO:0003677 GO:GO:0042742
GO:GO:0003682 Gene3D:1.10.10.60 GO:GO:0016514 GO:GO:0004386
GO:GO:0009910 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 InterPro:IPR017877 PROSITE:PS50090
InterPro:IPR013999 InterPro:IPR014012 InterPro:IPR006562
Pfam:PF07529 SMART:SM00573 PROSITE:PS51204 KO:K11320 GO:GO:0048451
EMBL:AY279398 IPI:IPI00545059 RefSeq:NP_187887.3 UniGene:At.39549
SMR:Q7X9V2 IntAct:Q7X9V2 STRING:Q7X9V2 EnsemblPlants:AT3G12810.1
GeneID:820463 KEGG:ath:AT3G12810 TAIR:At3g12810 InParanoid:Q7X9V2
OMA:CCHPPPS ProtClustDB:CLSN2680833 Genevestigator:Q7X9V2
Uniprot:Q7X9V2
Length = 2055
Score = 128 (50.1 bits), Expect = 1.0e-12, Sum P(3) = 1.0e-12
Identities = 32/91 (35%), Positives = 48/91 (52%)
Query: 18 QATFEVEQVDQAKRIISPFMLRRLKKDVLTELPKKTALVIKVPMIPSQAEKYRGLMEDFK 77
Q E +D+ ++ PF+LRRLK+DV +LP K VI + +++ R L EDF
Sbjct: 736 QEKINKEVIDRLHNVLRPFLLRRLKRDVEKQLPSKHEHVIFCRL----SKRQRNLYEDFI 791
Query: 78 KTANPEGSNRSNEISHM-SMFMMLRKMANHP 107
+ + + S M S+ M LRK+ NHP
Sbjct: 792 ASTETQATLTSGSFFGMISIIMQLRKVCNHP 822
Score = 123 (48.4 bits), Expect = 1.0e-12, Sum P(3) = 1.0e-12
Identities = 26/66 (39%), Positives = 43/66 (65%)
Query: 170 PDDLVVE--SGKLKKLDEILPDLKKNGHRVLIFSQFIFVLDILGHYMDIRGWRHLRLDGA 227
PD +++ GKL++L +L LK GHR LIF+Q +LD+L ++++ G+ ++RLDG+
Sbjct: 1065 PDRRLIQFDCGKLQELAMLLRKLKFGGHRALIFTQMTKMLDVLEAFINLYGYTYMRLDGS 1124
Query: 228 TQVSSR 233
T R
Sbjct: 1125 TPPEER 1130
Score = 40 (19.1 bits), Expect = 0.00066, Sum P(2) = 0.00066
Identities = 9/31 (29%), Positives = 16/31 (51%)
Query: 5 SEDDARYEDKRKEQATFEVEQVDQAKRIISP 35
SED D+ ++QA + + VD + + P
Sbjct: 446 SEDSIVDSDENRQQADLDDDNVDLTECKLDP 476
Score = 40 (19.1 bits), Expect = 0.00066, Sum P(2) = 0.00066
Identities = 18/84 (21%), Positives = 35/84 (41%)
Query: 3 SDSEDDARYEDKRKEQATFEVEQVDQAKRIISPFMLRRLKKDVLTELPKKTALVIKVPMI 62
S E + E++R + + + D K + L K ++ KK A+ ++ +
Sbjct: 89 SREERKLKEEEQRLRKVALNISK-DMKKFWMKVEKLVLYKHQLVRNEKKKKAMDKQLEFL 147
Query: 63 PSQAEKY-----RGLMEDFKKTAN 81
Q E+Y L+E +K+ N
Sbjct: 148 LGQTERYSTMLAENLVEPYKQGQN 171
Score = 37 (18.1 bits), Expect = 1.0e-12, Sum P(3) = 1.0e-12
Identities = 9/25 (36%), Positives = 14/25 (56%)
Query: 2 DSDS-EDDARYEDKRKEQATFEVEQ 25
D D+ E+D ++ KR+ Q E Q
Sbjct: 224 DEDTIEEDEKHFTKRERQEELEALQ 248
>UNIPROTKB|E1C2F7 [details] [associations]
symbol:E1C2F7 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0000790 "nuclear
chromatin" evidence=IEA] [GO:0001105 "RNA polymerase II
transcription coactivator activity" evidence=IEA] [GO:0008285
"negative regulation of cell proliferation" evidence=IEA]
[GO:0016514 "SWI/SNF complex" evidence=IEA] [GO:0030308 "negative
regulation of cell growth" evidence=IEA] [GO:0035887 "aortic smooth
muscle cell differentiation" evidence=IEA] [GO:0044212
"transcription regulatory region DNA binding" evidence=IEA]
[GO:0045111 "intermediate filament cytoskeleton" evidence=IEA]
[GO:0045892 "negative regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0071564 "npBAF complex" evidence=IEA] [GO:0071565
"nBAF complex" evidence=IEA] [GO:0071778 "WINAC complex"
evidence=IEA] InterPro:IPR000330 InterPro:IPR001487
InterPro:IPR001650 InterPro:IPR006576 InterPro:IPR014978
Pfam:PF00176 Pfam:PF00271 Pfam:PF00439 Pfam:PF07533 Pfam:PF08880
PRINTS:PR00503 PROSITE:PS50014 PROSITE:PS51194 SMART:SM00297
SMART:SM00490 SMART:SM00592 SMART:SM00951 GO:GO:0005524
GO:GO:0045892 GO:GO:0008285 GO:GO:0030308 GO:GO:0045944
GO:GO:0044212 GO:GO:0045111 GO:GO:0000790 GO:GO:0071564
GO:GO:0016514 GO:GO:0071565 GO:GO:0004386 GO:GO:0001105
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 Gene3D:1.20.920.10
SUPFAM:SSF47370 PROSITE:PS00633 InterPro:IPR018359 GO:GO:0071778
GeneTree:ENSGT00550000074659 InterPro:IPR013999 InterPro:IPR014012
InterPro:IPR006562 Pfam:PF07529 SMART:SM00573 PROSITE:PS51204
OMA:PQEGMHQ EMBL:AADN02068434 EMBL:AADN02068435 EMBL:AADN02068436
EMBL:AADN02068437 EMBL:AADN02068438 EMBL:AADN02068439
EMBL:AADN02068440 EMBL:AADN02068441 IPI:IPI00583413
Ensembl:ENSGALT00000016528 Uniprot:E1C2F7
Length = 1546
Score = 124 (48.7 bits), Expect = 1.1e-12, Sum P(3) = 1.1e-12
Identities = 26/62 (41%), Positives = 36/62 (58%)
Query: 172 DLVVESGKLKKLDEILPDLKKNGHRVLIFSQFIFVLDILGHYMDIRGWRHLRLDGATQVS 231
+L SGK + LD ILP L+ HRVL+F Q ++ I+ Y R + +LRLDG T+
Sbjct: 1018 ELYRASGKFELLDRILPKLRATNHRVLLFCQMTSLMTIMEDYFAFRNFLYLRLDGTTKSE 1077
Query: 232 SR 233
R
Sbjct: 1078 DR 1079
Score = 118 (46.6 bits), Expect = 1.1e-12, Sum P(3) = 1.1e-12
Identities = 33/90 (36%), Positives = 48/90 (53%)
Query: 31 RIISPFMLRRLKKDVLTELPKKTALVIKVPMIPSQAEKYRGLMEDFKKTANPEGSNRSNE 90
+++ PF+LRRLKK+V ++LP+K VIK M Q YR + K +GS + +
Sbjct: 914 KVLRPFLLRRLKKEVESQLPEKVEYVIKCDMSALQKILYRHMQA--KGILLTDGSEKDKK 971
Query: 91 -----ISHMSMFMMLRKMANHPLGLRYYFQ 115
+ M+ M LRK+ NHP Y FQ
Sbjct: 972 GKGGAKTLMNTIMQLRKICNHP----YMFQ 997
Score = 43 (20.2 bits), Expect = 1.1e-12, Sum P(3) = 1.1e-12
Identities = 12/35 (34%), Positives = 22/35 (62%)
Query: 3 SDSEDDA--RYEDKRKEQATFEVEQVDQAKRIISP 35
SDSED++ YE++ E+ + +E D+ K ++ P
Sbjct: 606 SDSEDESGSEYEEEDDEEESSRLE-ADE-KILLDP 638
Score = 43 (20.2 bits), Expect = 0.00021, Sum P(3) = 0.00021
Identities = 10/24 (41%), Positives = 16/24 (66%)
Query: 156 SLKHKTLDCAKYKVP-DDLVVESG 178
S++ K L AKYK+ D V+++G
Sbjct: 1153 SVEEKILAAAKYKLNVDQKVIQAG 1176
>CGD|CAL0005444 [details] [associations]
symbol:SNF2 species:5476 "Candida albicans" [GO:0016514
"SWI/SNF complex" evidence=IPI] [GO:0009405 "pathogenesis"
evidence=IMP] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IMP] [GO:0008094 "DNA-dependent ATPase
activity" evidence=IEA] [GO:0001102 "RNA polymerase II activating
transcription factor binding" evidence=IEA] [GO:0070577 "histone
acetyl-lysine binding" evidence=IEA] [GO:0031492 "nucleosomal DNA
binding" evidence=IEA] [GO:0016586 "RSC complex" evidence=IEA]
[GO:0044182 "filamentous growth of a population of unicellular
organisms" evidence=IMP] [GO:1900430 "positive regulation of
filamentous growth of a population of unicellular organisms"
evidence=IMP] [GO:0036178 "filamentous growth of a population of
unicellular organisms in response to neutral pH" evidence=IMP]
[GO:1900442 "positive regulation of filamentous growth of a
population of unicellular organisms in response to neutral pH"
evidence=IMP] [GO:0036180 "filamentous growth of a population of
unicellular organisms in response to biotic stimulus" evidence=IMP]
[GO:1900445 "positive regulation of filamentous growth of a
population of unicellular organisms in response to biotic stimulus"
evidence=IMP] [GO:0042766 "nucleosome mobilization" evidence=IEA]
[GO:0005987 "sucrose catabolic process" evidence=IEA] [GO:1900231
"regulation of single-species biofilm formation on inanimate
substrate" evidence=IEA] [GO:0006366 "transcription from RNA
polymerase II promoter" evidence=IEA] [GO:0042148 "strand invasion"
evidence=IEA] [GO:0044109 "cellular alcohol catabolic process"
evidence=IEA] [GO:0006302 "double-strand break repair"
evidence=IEA] [GO:0031496 "positive regulation of mating type
switching" evidence=IEA] [GO:0043044 "ATP-dependent chromatin
remodeling" evidence=IEA] [GO:0006261 "DNA-dependent DNA
replication" evidence=IEA] [GO:0061412 "positive regulation of
transcription from RNA polymerase II promoter in response to amino
acid starvation" evidence=IEA] [GO:0036244 "cellular response to
neutral pH" evidence=IMP] [GO:0071216 "cellular response to biotic
stimulus" evidence=IMP] [GO:0030447 "filamentous growth"
evidence=IMP] InterPro:IPR000330 InterPro:IPR001487
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 Pfam:PF00439
PRINTS:PR00503 PROSITE:PS50014 PROSITE:PS51194 SMART:SM00297
SMART:SM00490 CGD:CAL0005444 GO:GO:0005524 GO:GO:0071216
GO:GO:0036244 GO:GO:0036180 GO:GO:0036178 GO:GO:0009405
GO:GO:1900445 GO:GO:1900442 GO:GO:0006355 GO:GO:0003677
GO:GO:0016514 GO:GO:0004386 EMBL:AACQ01000007 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 Gene3D:1.20.920.10 SUPFAM:SSF47370
PROSITE:PS00633 InterPro:IPR018359 InterPro:IPR014012
InterPro:IPR006562 Pfam:PF07529 PROSITE:PS51204 KO:K11786
RefSeq:XP_722570.1 ProteinModelPortal:Q5AM49 MINT:MINT-2832160
STRING:Q5AM49 GeneID:3635855 KEGG:cal:CaO19.1526 Uniprot:Q5AM49
Length = 1690
Score = 132 (51.5 bits), Expect = 1.4e-12, Sum P(2) = 1.4e-12
Identities = 23/57 (40%), Positives = 38/57 (66%)
Query: 177 SGKLKKLDEILPDLKKNGHRVLIFSQFIFVLDILGHYMDIRGWRHLRLDGATQVSSR 233
+GK + LD++LP K GH+VLIF Q +++I+ ++ RG +++RLDG T+ R
Sbjct: 1101 AGKFELLDKVLPKFKATGHKVLIFFQMTQIMNIMEDFLRFRGMKYMRLDGGTKADDR 1157
Score = 112 (44.5 bits), Expect = 1.4e-12, Sum P(2) = 1.4e-12
Identities = 28/93 (30%), Positives = 49/93 (52%)
Query: 17 EQATFEVEQVDQAKRIISPFMLRRLKKDVLTELPKKTALVIKVPMIPSQAEKYRGLME-D 75
E+ T V + + +++ PF+LRRLKKDV +LP K V+K Q++ Y+ ++ +
Sbjct: 987 EEETLLV--IRRLHKVLRPFLLRRLKKDVEKDLPNKVEKVVKCKSSALQSKLYQQMLRYN 1044
Query: 76 FKKTANPEGSNRSNEISHMS-MFMMLRKMANHP 107
+P + I + + M L+K+ NHP
Sbjct: 1045 MLYAGDPANGSVPVTIKNANNQIMQLKKICNHP 1077
Score = 43 (20.2 bits), Expect = 1.8e-05, Sum P(2) = 1.8e-05
Identities = 10/36 (27%), Positives = 21/36 (58%)
Query: 57 IKVPM-IPSQAEKYRGLMEDFKKTANPEGSNRSNEI 91
+++P IPSQ ++Y ++ +NP+ + + EI
Sbjct: 286 MQMPQSIPSQPQQYALQQQNDLSNSNPKSTGGTPEI 321
Score = 40 (19.1 bits), Expect = 3.5e-05, Sum P(2) = 3.5e-05
Identities = 14/49 (28%), Positives = 27/49 (55%)
Query: 4 DSEDDARYEDKRKEQATFEVEQVDQAKRIISPF--MLRRLKKDVLTELP 50
+++D+ Y + E A+ VE +D KR + + R+K++V T+ P
Sbjct: 728 EAQDNLAYSGRAIEPAS--VEPLDDEKREKIDYYNVAHRIKEEV-TKQP 773
>UNIPROTKB|Q5AM49 [details] [associations]
symbol:SNF2 "Putative uncharacterized protein SNF2"
species:237561 "Candida albicans SC5314" [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IMP] [GO:0009405
"pathogenesis" evidence=IMP] [GO:0016514 "SWI/SNF complex"
evidence=IPI] [GO:0030447 "filamentous growth" evidence=IMP]
[GO:0036178 "filamentous growth of a population of unicellular
organisms in response to neutral pH" evidence=IMP] [GO:0036180
"filamentous growth of a population of unicellular organisms in
response to biotic stimulus" evidence=IMP] [GO:0036244 "cellular
response to neutral pH" evidence=IMP] [GO:0044182 "filamentous
growth of a population of unicellular organisms" evidence=IMP]
[GO:0071216 "cellular response to biotic stimulus" evidence=IMP]
[GO:1900430 "positive regulation of filamentous growth of a
population of unicellular organisms" evidence=IMP] [GO:1900442
"positive regulation of filamentous growth of a population of
unicellular organisms in response to neutral pH" evidence=IMP]
[GO:1900445 "positive regulation of filamentous growth of a
population of unicellular organisms in response to biotic stimulus"
evidence=IMP] InterPro:IPR000330 InterPro:IPR001487
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 Pfam:PF00439
PRINTS:PR00503 PROSITE:PS50014 PROSITE:PS51194 SMART:SM00297
SMART:SM00490 CGD:CAL0005444 GO:GO:0005524 GO:GO:0071216
GO:GO:0036244 GO:GO:0036180 GO:GO:0036178 GO:GO:0009405
GO:GO:1900445 GO:GO:1900442 GO:GO:0006355 GO:GO:0003677
GO:GO:0016514 GO:GO:0004386 EMBL:AACQ01000007 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 Gene3D:1.20.920.10 SUPFAM:SSF47370
PROSITE:PS00633 InterPro:IPR018359 InterPro:IPR014012
InterPro:IPR006562 Pfam:PF07529 PROSITE:PS51204 KO:K11786
RefSeq:XP_722570.1 ProteinModelPortal:Q5AM49 MINT:MINT-2832160
STRING:Q5AM49 GeneID:3635855 KEGG:cal:CaO19.1526 Uniprot:Q5AM49
Length = 1690
Score = 132 (51.5 bits), Expect = 1.4e-12, Sum P(2) = 1.4e-12
Identities = 23/57 (40%), Positives = 38/57 (66%)
Query: 177 SGKLKKLDEILPDLKKNGHRVLIFSQFIFVLDILGHYMDIRGWRHLRLDGATQVSSR 233
+GK + LD++LP K GH+VLIF Q +++I+ ++ RG +++RLDG T+ R
Sbjct: 1101 AGKFELLDKVLPKFKATGHKVLIFFQMTQIMNIMEDFLRFRGMKYMRLDGGTKADDR 1157
Score = 112 (44.5 bits), Expect = 1.4e-12, Sum P(2) = 1.4e-12
Identities = 28/93 (30%), Positives = 49/93 (52%)
Query: 17 EQATFEVEQVDQAKRIISPFMLRRLKKDVLTELPKKTALVIKVPMIPSQAEKYRGLME-D 75
E+ T V + + +++ PF+LRRLKKDV +LP K V+K Q++ Y+ ++ +
Sbjct: 987 EEETLLV--IRRLHKVLRPFLLRRLKKDVEKDLPNKVEKVVKCKSSALQSKLYQQMLRYN 1044
Query: 76 FKKTANPEGSNRSNEISHMS-MFMMLRKMANHP 107
+P + I + + M L+K+ NHP
Sbjct: 1045 MLYAGDPANGSVPVTIKNANNQIMQLKKICNHP 1077
Score = 43 (20.2 bits), Expect = 1.8e-05, Sum P(2) = 1.8e-05
Identities = 10/36 (27%), Positives = 21/36 (58%)
Query: 57 IKVPM-IPSQAEKYRGLMEDFKKTANPEGSNRSNEI 91
+++P IPSQ ++Y ++ +NP+ + + EI
Sbjct: 286 MQMPQSIPSQPQQYALQQQNDLSNSNPKSTGGTPEI 321
Score = 40 (19.1 bits), Expect = 3.5e-05, Sum P(2) = 3.5e-05
Identities = 14/49 (28%), Positives = 27/49 (55%)
Query: 4 DSEDDARYEDKRKEQATFEVEQVDQAKRIISPF--MLRRLKKDVLTELP 50
+++D+ Y + E A+ VE +D KR + + R+K++V T+ P
Sbjct: 728 EAQDNLAYSGRAIEPAS--VEPLDDEKREKIDYYNVAHRIKEEV-TKQP 773
>ASPGD|ASPL0000047400 [details] [associations]
symbol:AN2285 species:162425 "Emericella nidulans"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0031011 "Ino80 complex" evidence=IEA] [GO:0043140
"ATP-dependent 3'-5' DNA helicase activity" evidence=IEA]
[GO:0016887 "ATPase activity" evidence=IEA] [GO:0042766 "nucleosome
mobilization" evidence=IEA] [GO:0006281 "DNA repair" evidence=IEA]
[GO:0043486 "histone exchange" evidence=IEA] [GO:0006348 "chromatin
silencing at telomere" evidence=IEA] [GO:0006366 "transcription
from RNA polymerase II promoter" evidence=IEA] [GO:0016584
"nucleosome positioning" evidence=IEA] [GO:0045944 "positive
regulation of transcription from RNA polymerase II promoter"
evidence=IEA] [GO:0043618 "regulation of transcription from RNA
polymerase II promoter in response to stress" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001650 InterPro:IPR020838
Pfam:PF00176 Pfam:PF00271 Pfam:PF13892 PROSITE:PS51194
PROSITE:PS51413 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
GO:GO:0006355 GO:GO:0003677 EMBL:BN001307 GO:GO:0006281
GO:GO:0006351 GO:GO:0016568 GO:GO:0004386 EMBL:AACD01000038
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
KO:K11665 RefSeq:XP_659889.1 ProteinModelPortal:Q5BAZ5
STRING:Q5BAZ5 EnsemblFungi:CADANIAT00008977 GeneID:2874790
KEGG:ani:AN2285.2 HOGENOM:HOG000048482 OMA:LYFQMTR
OrthoDB:EOG41G6C8 Uniprot:Q5BAZ5
Length = 1612
Score = 151 (58.2 bits), Expect = 1.4e-12, Sum P(2) = 1.4e-12
Identities = 27/60 (45%), Positives = 43/60 (71%)
Query: 174 VVESGKLKKLDEILPDLKKNGHRVLIFSQFIFVLDILGHYMDIRGWRHLRLDGATQVSSR 233
V +SGKL KLDE+L +LK GHRVL++ Q ++D++ Y+ R +++ RLDG+T++ R
Sbjct: 1317 VTDSGKLAKLDELLRELKAGGHRVLLYFQMTRMIDLMEEYLTYRNYKYCRLDGSTKLEDR 1376
Score = 87 (35.7 bits), Expect = 1.4e-12, Sum P(2) = 1.4e-12
Identities = 28/102 (27%), Positives = 45/102 (44%)
Query: 12 EDKRKEQATFEVEQVDQAKRIISPFMLRRLKKDVLTELPKKTALVIKVPMIPSQAEKYRG 71
E + +Q+ + I+ PFMLRR+KK V EL K + + Q Y
Sbjct: 999 ESHAQSNTKLNEDQLRRLHMILKPFMLRRVKKHVQQELGDKVEKDVFCDLTYRQRALYTN 1058
Query: 72 L------MEDFKKTANPEGSNRSNEISHMSMFMMLRKMANHP 107
L M+ +K A + ++ + M++ M RK+ NHP
Sbjct: 1059 LRNRVSIMDLIEKAAV---GDETDSTTLMNLVMQFRKVCNHP 1097
Score = 46 (21.3 bits), Expect = 2.4e-08, Sum P(2) = 2.4e-08
Identities = 17/69 (24%), Positives = 30/69 (43%)
Query: 7 DDARYEDKRKEQATFEVEQV-DQAKRIISPFMLRRLKKDVLTELPKKTALVIKVPMIPSQ 65
D RY ++ + + +++ D+ +R RR + V E+ KK +K
Sbjct: 367 DRFRYANEASVISEVQAKEIQDEKERKKDMQRKRRRENTVRMEMQKKLEAELKANETQDS 426
Query: 66 AEKYRGLME 74
AEK + L E
Sbjct: 427 AEKAKFLRE 435
Score = 36 (17.7 bits), Expect = 2.5e-07, Sum P(2) = 2.5e-07
Identities = 8/31 (25%), Positives = 13/31 (41%)
Query: 1 MDSDSEDDARYEDKRKEQATFEVEQVDQAKR 31
+D D+EDD A V++ + R
Sbjct: 727 LDFDAEDDTALRQAAMANAQSAVQKAQERAR 757
>RGD|1565642 [details] [associations]
symbol:Srcap "Snf2-related CREBBP activator protein"
species:10116 "Rattus norvegicus" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISO] [GO:0005794 "Golgi apparatus" evidence=ISO]
[GO:0043234 "protein complex" evidence=ISO] InterPro:IPR000330
InterPro:IPR001650 InterPro:IPR017956 Pfam:PF00176 Pfam:PF00271
PROSITE:PS51194 SMART:SM00384 SMART:SM00490 RGD:1565642
GO:GO:0005524 GO:GO:0005634 GO:GO:0005794 GO:GO:0043234
GO:GO:0003677 InterPro:IPR020478 PRINTS:PR00929 GO:GO:0004386
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 InterPro:IPR014012
InterPro:IPR006562 Pfam:PF07529 PROSITE:PS51204 OrthoDB:EOG4B2SWB
IPI:IPI00778475 Ensembl:ENSRNOT00000054997 UCSC:RGD:1565642
ArrayExpress:D3ZWX7 Uniprot:D3ZWX7
Length = 3182
Score = 134 (52.2 bits), Expect = 1.4e-12, Sum P(2) = 1.4e-12
Identities = 30/78 (38%), Positives = 48/78 (61%)
Query: 159 HKTLDCAKYKVPDDLVVE---SGKLKKLDEILPDLKKNGHRVLIFSQFIFVLDILGHYMD 215
H+ + + + PD +++ +GKL+ L +L LK GHRVLIF+Q +LD+L ++
Sbjct: 2009 HRIVCNMRTQFPDLRLIQYDCAGKLQTLAVLLRQLKAEGHRVLIFTQMTRMLDVLEQFLT 2068
Query: 216 IRGWRHLRLDGATQVSSR 233
G +LRLDG+T+V R
Sbjct: 2069 YHGHLYLRLDGSTRVEQR 2086
Score = 115 (45.5 bits), Expect = 1.4e-12, Sum P(2) = 1.4e-12
Identities = 28/83 (33%), Positives = 49/83 (59%)
Query: 26 VDQAKRIISPFMLRRLKKDVLTELPKKTALVIKVPMIPSQAEKYRGLMEDFK-KTANPEG 84
V + +++ PF+LRR+K DV ++PKK VI+ + +++ R L +DF +T E
Sbjct: 836 VKRLHKVLRPFLLRRVKVDVEKQMPKKYEHVIRCRL----SKRQRCLYDDFMAQTTTKET 891
Query: 85 SNRSNEISHMSMFMMLRKMANHP 107
+ +S +++ M LRK+ NHP
Sbjct: 892 LATGHFMSVINILMQLRKVCNHP 914
Score = 45 (20.9 bits), Expect = 2.3e-05, Sum P(2) = 2.3e-05
Identities = 17/68 (25%), Positives = 30/68 (44%)
Query: 6 EDDARYEDKRKEQATFEVEQVDQAKRIISPFMLRRLKKDVLTELPKKTALVIKVPMIPSQ 65
E+ AR E++ K + D + + + + K+ E +K AL + + I Q
Sbjct: 180 EERARREEQAKLRRIASTMAKDVRQFWSNVEKVVQFKQQSRLEEKRKKALDLHLDFIVGQ 239
Query: 66 AEKYRGLM 73
EKY L+
Sbjct: 240 TEKYSDLL 247
Score = 41 (19.5 bits), Expect = 5.9e-05, Sum P(2) = 5.9e-05
Identities = 9/21 (42%), Positives = 13/21 (61%)
Query: 128 EDPTYKGTNPQYILEDISWLS 148
E P KG + Y+ E++ WLS
Sbjct: 129 EPPRPKG-HWDYLCEEMQWLS 148
Score = 38 (18.4 bits), Expect = 0.00012, Sum P(2) = 0.00012
Identities = 7/17 (41%), Positives = 13/17 (76%)
Query: 12 EDKRKEQATFEVEQVDQ 28
E+KRK+Q + +E++ Q
Sbjct: 1877 EEKRKQQRSERLERIFQ 1893
>SGD|S000005816 [details] [associations]
symbol:SNF2 "Catalytic subunit of the SWI/SNF chromatin
remodeling complex" species:4932 "Saccharomyces cerevisiae"
[GO:0006261 "DNA-dependent DNA replication" evidence=IMP]
[GO:0016514 "SWI/SNF complex" evidence=IDA;IMP] [GO:0006338
"chromatin remodeling" evidence=IGI;IMP] [GO:0031496 "positive
regulation of mating type switching" evidence=IMP] [GO:0031492
"nucleosomal DNA binding" evidence=IDA] [GO:0042766 "nucleosome
mobilization" evidence=IMP;IDA] [GO:0006302 "double-strand break
repair" evidence=IMP] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA;IDA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0008094 "DNA-dependent ATPase activity"
evidence=IMP;IDA] [GO:0045944 "positive regulation of transcription
from RNA polymerase II promoter" evidence=IGI;IMP] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0016818 "hydrolase activity, acting on acid
anhydrides, in phosphorus-containing anhydrides" evidence=IEA]
[GO:0043044 "ATP-dependent chromatin remodeling" evidence=IMP;IDA]
[GO:0044109 "cellular alcohol catabolic process" evidence=IMP]
[GO:0005987 "sucrose catabolic process" evidence=IMP] [GO:0070577
"histone acetyl-lysine binding" evidence=IMP;IDA] [GO:0042148
"strand invasion" evidence=IMP] [GO:0061412 "positive regulation of
transcription from RNA polymerase II promoter in response to amino
acid starvation" evidence=IMP] [GO:0001102 "RNA polymerase II
activating transcription factor binding" evidence=IPI]
InterPro:IPR000330 InterPro:IPR001487 InterPro:IPR001650
InterPro:IPR014978 InterPro:IPR017956 Pfam:PF00176 Pfam:PF00271
Pfam:PF00439 Pfam:PF08880 PRINTS:PR00503 PROSITE:PS50014
PROSITE:PS51194 SMART:SM00297 SMART:SM00384 SMART:SM00490
SMART:SM00951 SGD:S000005816 GO:GO:0005524 EMBL:BK006948
GO:GO:0006351 GO:GO:0006261 GO:GO:0016514 GO:GO:0006302
GO:GO:0004386 GO:GO:0005987 GO:GO:0042766 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0043044
Gene3D:1.20.920.10 SUPFAM:SSF47370 PROSITE:PS00633 GO:GO:0070577
InterPro:IPR018359 GeneTree:ENSGT00550000074659 InterPro:IPR014012
PROSITE:PS51204 EMBL:X89633 GO:GO:0008094 HOGENOM:HOG000172362
GO:GO:0031492 RefSeq:NP_014933.3 GeneID:854465 KEGG:sce:YOR290C
KO:K11786 GO:GO:0061412 GO:GO:0042148 OrthoDB:EOG4D565R EMBL:M61703
EMBL:X57837 EMBL:D90459 EMBL:Z75198 EMBL:Z75199 PIR:S15047
RefSeq:NP_014935.3 ProteinModelPortal:P22082 SMR:P22082
DIP:DIP-1150N IntAct:P22082 MINT:MINT-600461 STRING:P22082
PaxDb:P22082 PeptideAtlas:P22082 EnsemblFungi:YOR290C GeneID:854467
KEGG:sce:YOR292C CYGD:YOR290c OMA:HPNFLSK NextBio:976750
Genevestigator:P22082 GermOnline:YOR290C GO:GO:0044109
GO:GO:0031496 Uniprot:P22082
Length = 1703
Score = 131 (51.2 bits), Expect = 1.4e-12, Sum P(2) = 1.4e-12
Identities = 28/63 (44%), Positives = 39/63 (61%)
Query: 171 DDLVVESGKLKKLDEILPDLKKNGHRVLIFSQFIFVLDILGHYMDIRGWRHLRLDGATQV 230
DD+ +GK + LD ILP LK GHRVLIF Q ++DI+ ++ ++LRLDG T+
Sbjct: 1080 DDIWRVAGKFELLDRILPKLKATGHRVLIFFQMTQIMDIMEDFLRYINIKYLRLDGHTKS 1139
Query: 231 SSR 233
R
Sbjct: 1140 DER 1142
Score = 113 (44.8 bits), Expect = 1.4e-12, Sum P(2) = 1.4e-12
Identities = 32/110 (29%), Positives = 53/110 (48%)
Query: 17 EQATFEVEQVDQAKRIISPFMLRRLKKDVLTELPKKTALVIKVPMIPSQAEKYRGLMEDF 76
E+ T V + + +++ PF+LRRLKKDV ELP K V+K M Q Y+ +++
Sbjct: 973 EEETLLV--IRRLHKVLRPFLLRRLKKDVEKELPDKVEKVVKCKMSALQQIMYQQMLKYR 1030
Query: 77 KKTANPEGSNRSNEISHMS-MFMMLRKMANHPLGLRYYFQE-NTLREIAD 124
+ + + + + + M L+K+ NHP + N RE D
Sbjct: 1031 RLFIGDQNNKKMVGLRGFNNQIMQLKKICNHPFVFEEVEDQINPTRETND 1080
Score = 37 (18.1 bits), Expect = 9.6e-05, Sum P(2) = 9.6e-05
Identities = 6/20 (30%), Positives = 13/20 (65%)
Query: 12 EDKRKEQATFEVEQVDQAKR 31
+ + +QA F+ +Q QA++
Sbjct: 207 QQAQMQQAQFQAQQAQQAQQ 226
>UNIPROTKB|F1RG74 [details] [associations]
symbol:SRCAP "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0043234 "protein complex" evidence=IEA] [GO:0005794
"Golgi apparatus" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001650 InterPro:IPR017956
Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194 SMART:SM00384
SMART:SM00490 GO:GO:0005524 GO:GO:0005634 GO:GO:0005794
GO:GO:0043234 GO:GO:0003677 InterPro:IPR020478 PRINTS:PR00929
GO:GO:0004386 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
InterPro:IPR014012 InterPro:IPR006562 Pfam:PF07529 PROSITE:PS51204
GeneTree:ENSGT00530000063427 OMA:LGTGNPQ EMBL:FP102572
Ensembl:ENSSSCT00000008537 Uniprot:F1RG74
Length = 3230
Score = 134 (52.2 bits), Expect = 1.5e-12, Sum P(2) = 1.5e-12
Identities = 30/77 (38%), Positives = 47/77 (61%)
Query: 159 HKTLDCAKYKVPDDLVVE--SGKLKKLDEILPDLKKNGHRVLIFSQFIFVLDILGHYMDI 216
H+ + + + PD +++ GKL+ L +L LK GHRVLIF+Q +LD+L ++
Sbjct: 2022 HRIVCNMRTQFPDLRLIQYDCGKLQTLAVLLRQLKAEGHRVLIFTQMTRMLDVLEQFLTY 2081
Query: 217 RGWRHLRLDGATQVSSR 233
G +LRLDG+T+V R
Sbjct: 2082 HGHLYLRLDGSTRVEQR 2098
Score = 115 (45.5 bits), Expect = 1.5e-12, Sum P(2) = 1.5e-12
Identities = 28/83 (33%), Positives = 49/83 (59%)
Query: 26 VDQAKRIISPFMLRRLKKDVLTELPKKTALVIKVPMIPSQAEKYRGLMEDFK-KTANPEG 84
V + +++ PF+LRR+K DV ++PKK VI+ + +++ R L +DF +T E
Sbjct: 833 VKRLHKVLRPFLLRRVKVDVEKQMPKKYEHVIRCRL----SKRQRCLYDDFMAQTTTKET 888
Query: 85 SNRSNEISHMSMFMMLRKMANHP 107
+ +S +++ M LRK+ NHP
Sbjct: 889 LATGHFMSVINILMQLRKVCNHP 911
Score = 45 (20.9 bits), Expect = 2.4e-05, Sum P(2) = 2.4e-05
Identities = 17/68 (25%), Positives = 30/68 (44%)
Query: 6 EDDARYEDKRKEQATFEVEQVDQAKRIISPFMLRRLKKDVLTELPKKTALVIKVPMIPSQ 65
E+ AR E++ K + D + + + + K+ E +K AL + + I Q
Sbjct: 180 EERARREEQAKLRRIASTMAKDVRQFWSNVEKVVQFKQQSRLEEKRKKALDLHLDFIVGQ 239
Query: 66 AEKYRGLM 73
EKY L+
Sbjct: 240 TEKYSDLL 247
Score = 41 (19.5 bits), Expect = 6.1e-05, Sum P(2) = 6.1e-05
Identities = 9/21 (42%), Positives = 13/21 (61%)
Query: 128 EDPTYKGTNPQYILEDISWLS 148
E P KG + Y+ E++ WLS
Sbjct: 129 EPPRPKG-HWDYLCEEMQWLS 148
Score = 39 (18.8 bits), Expect = 9.7e-05, Sum P(2) = 9.7e-05
Identities = 23/102 (22%), Positives = 40/102 (39%)
Query: 2 DSDSEDDARYEDKRK-EQATFEVEQVDQAKRIISPFM-LRRLKKD--------VLTELPK 51
D D E+ ED+ + E+ T E+ Q + + P + L L ++ +L +
Sbjct: 397 DEDDEEFTANEDEAEDEEDTIAAEE--QLEGEVDPAVELNELAREGGELSVEELLQQYAG 454
Query: 52 KTALVIKVPMIPSQAEKYRGLMEDFKKTANPEGSNRSNEISH 93
A P S E+ +E + PEG+ + E H
Sbjct: 455 AYASDASAPGSGSSEEEEEDEVEADSSESEPEGAAEAEEAPH 496
Score = 38 (18.4 bits), Expect = 0.00012, Sum P(2) = 0.00012
Identities = 7/17 (41%), Positives = 13/17 (76%)
Query: 12 EDKRKEQATFEVEQVDQ 28
E+KRK+Q + +E++ Q
Sbjct: 1890 EEKRKQQRSERLERIFQ 1906
Score = 38 (18.4 bits), Expect = 0.00012, Sum P(2) = 0.00012
Identities = 7/27 (25%), Positives = 14/27 (51%)
Query: 11 YEDKRKEQATFEVEQVDQAKRIISPFM 37
Y + ++ F +++DQ II F+
Sbjct: 1951 YTEAARQAVLFPQQRLDQLSEIIERFI 1977
>UNIPROTKB|Q6ZRS2 [details] [associations]
symbol:SRCAP "Helicase SRCAP" species:9606 "Homo sapiens"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0019048 "virus-host interaction" evidence=IEA] [GO:0043234
"protein complex" evidence=IDA] [GO:0003713 "transcription
coactivator activity" evidence=TAS] [GO:0004402 "histone
acetyltransferase activity" evidence=TAS] [GO:0006357 "regulation
of transcription from RNA polymerase II promoter" evidence=TAS]
[GO:0016573 "histone acetylation" evidence=TAS] [GO:0005634
"nucleus" evidence=IDA] [GO:0005794 "Golgi apparatus" evidence=IDA]
InterPro:IPR000330 InterPro:IPR001650 InterPro:IPR017956
Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194 SMART:SM00384
SMART:SM00490 GO:GO:0005524 GO:GO:0005634 GO:GO:0005794
GO:GO:0019048 GO:GO:0043234 GO:GO:0003677 InterPro:IPR020478
PRINTS:PR00929 GO:GO:0006357 GO:GO:0006351 GO:GO:0003713
GO:GO:0004386 HSSP:Q97XQ5 eggNOG:COG0553 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 EMBL:AC106886 InterPro:IPR014012
InterPro:IPR006562 Pfam:PF07529 PROSITE:PS51204 GO:GO:0004402
EMBL:AC093249 EMBL:AK128030 EMBL:AB002307 EMBL:BC159099
EMBL:AF143946 IPI:IPI00009101 IPI:IPI00444046 IPI:IPI00550342
RefSeq:NP_006653.2 UniGene:Hs.647334 ProteinModelPortal:Q6ZRS2
SMR:Q6ZRS2 IntAct:Q6ZRS2 MINT:MINT-123408 STRING:Q6ZRS2
PhosphoSite:Q6ZRS2 DMDM:296452947 PaxDb:Q6ZRS2 PRIDE:Q6ZRS2
DNASU:10847 Ensembl:ENST00000262518 Ensembl:ENST00000344771
Ensembl:ENST00000380361 Ensembl:ENST00000395059 GeneID:10847
KEGG:hsa:10847 UCSC:uc002dze.1 UCSC:uc002dzg.1 CTD:10847
GeneCards:GC16P030710 H-InvDB:HIX0012970 HGNC:HGNC:16974
HPA:HPA028929 MIM:136140 MIM:611421 neXtProt:NX_Q6ZRS2
Orphanet:2044 PharmGKB:PA162404706 HOGENOM:HOG000168717
InParanoid:Q6ZRS2 KO:K11661 OMA:LGTGNPQ OrthoDB:EOG4B2SWB
ChiTaRS:SRCAP GenomeRNAi:10847 NextBio:41182 ArrayExpress:Q6ZRS2
Bgee:Q6ZRS2 CleanEx:HS_SRCAP Genevestigator:Q6ZRS2 Uniprot:Q6ZRS2
Length = 3230
Score = 134 (52.2 bits), Expect = 1.5e-12, Sum P(2) = 1.5e-12
Identities = 30/77 (38%), Positives = 47/77 (61%)
Query: 159 HKTLDCAKYKVPDDLVVE--SGKLKKLDEILPDLKKNGHRVLIFSQFIFVLDILGHYMDI 216
H+ + + + PD +++ GKL+ L +L LK GHRVLIF+Q +LD+L ++
Sbjct: 2022 HRIVCNMRTQFPDLRLIQYDCGKLQTLAVLLRQLKAEGHRVLIFTQMTRMLDVLEQFLTY 2081
Query: 217 RGWRHLRLDGATQVSSR 233
G +LRLDG+T+V R
Sbjct: 2082 HGHLYLRLDGSTRVEQR 2098
Score = 115 (45.5 bits), Expect = 1.5e-12, Sum P(2) = 1.5e-12
Identities = 28/83 (33%), Positives = 49/83 (59%)
Query: 26 VDQAKRIISPFMLRRLKKDVLTELPKKTALVIKVPMIPSQAEKYRGLMEDFK-KTANPEG 84
V + +++ PF+LRR+K DV ++PKK VI+ + +++ R L +DF +T E
Sbjct: 826 VKRLHKVLRPFLLRRVKVDVEKQMPKKYEHVIRCRL----SKRQRCLYDDFMAQTTTKET 881
Query: 85 SNRSNEISHMSMFMMLRKMANHP 107
+ +S +++ M LRK+ NHP
Sbjct: 882 LATGHFMSVINILMQLRKVCNHP 904
Score = 45 (20.9 bits), Expect = 2.4e-05, Sum P(2) = 2.4e-05
Identities = 17/68 (25%), Positives = 30/68 (44%)
Query: 6 EDDARYEDKRKEQATFEVEQVDQAKRIISPFMLRRLKKDVLTELPKKTALVIKVPMIPSQ 65
E+ AR E++ K + D + + + + K+ E +K AL + + I Q
Sbjct: 180 EERARREEQAKLRRIASTMAKDVRQFWSNVEKVVQFKQQSRLEEKRKKALDLHLDFIVGQ 239
Query: 66 AEKYRGLM 73
EKY L+
Sbjct: 240 TEKYSDLL 247
Score = 41 (19.5 bits), Expect = 6.1e-05, Sum P(2) = 6.1e-05
Identities = 9/21 (42%), Positives = 13/21 (61%)
Query: 128 EDPTYKGTNPQYILEDISWLS 148
E P KG + Y+ E++ WLS
Sbjct: 129 EPPRPKG-HWDYLCEEMQWLS 148
Score = 40 (19.1 bits), Expect = 7.7e-05, Sum P(2) = 7.7e-05
Identities = 18/71 (25%), Positives = 34/71 (47%)
Query: 2 DSDSEDDARYEDKRKEQATFEVEQVDQA------KRIISPFMLRRLKKDVLTELPKKTA- 54
D D + + +++ ++ T EVE+ + +R I +LRR + L EL +
Sbjct: 284 DEDGDFQPQEDEEEDDEETIEVEEQQEGNDAEAQRREIE--LLRREGELPLEELLRSLPP 341
Query: 55 LVIKVPMIPSQ 65
+++ P PSQ
Sbjct: 342 QLLEGPSSPSQ 352
Score = 36 (17.7 bits), Expect = 0.00020, Sum P(2) = 0.00020
Identities = 7/17 (41%), Positives = 12/17 (70%)
Query: 12 EDKRKEQATFEVEQVDQ 28
E+KRK Q + +E++ Q
Sbjct: 1890 EEKRKRQRSERLERIFQ 1906
>UNIPROTKB|E1BC33 [details] [associations]
symbol:LOC788113 "Uncharacterized protein" species:9913
"Bos taurus" [GO:0043234 "protein complex" evidence=IEA]
[GO:0005794 "Golgi apparatus" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR017956 Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194
SMART:SM00384 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
GO:GO:0005794 GO:GO:0043234 GO:GO:0003677 InterPro:IPR020478
PRINTS:PR00929 GO:GO:0004386 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 InterPro:IPR014012 InterPro:IPR006562 Pfam:PF07529
PROSITE:PS51204 GeneTree:ENSGT00530000063427 OMA:LGTGNPQ
EMBL:DAAA02057908 IPI:IPI00705506 Ensembl:ENSBTAT00000018503
Uniprot:E1BC33
Length = 3242
Score = 134 (52.2 bits), Expect = 1.5e-12, Sum P(2) = 1.5e-12
Identities = 30/77 (38%), Positives = 47/77 (61%)
Query: 159 HKTLDCAKYKVPDDLVVE--SGKLKKLDEILPDLKKNGHRVLIFSQFIFVLDILGHYMDI 216
H+ + + + PD +++ GKL+ L +L LK GHRVLIF+Q +LD+L ++
Sbjct: 2033 HRIVCNMRTQFPDLRLIQYDCGKLQTLAVLLRQLKAEGHRVLIFTQMTRMLDVLEQFLTY 2092
Query: 217 RGWRHLRLDGATQVSSR 233
G +LRLDG+T+V R
Sbjct: 2093 HGHLYLRLDGSTRVEQR 2109
Score = 115 (45.5 bits), Expect = 1.5e-12, Sum P(2) = 1.5e-12
Identities = 28/83 (33%), Positives = 49/83 (59%)
Query: 26 VDQAKRIISPFMLRRLKKDVLTELPKKTALVIKVPMIPSQAEKYRGLMEDFK-KTANPEG 84
V + +++ PF+LRR+K DV ++PKK VI+ + +++ R L +DF +T E
Sbjct: 834 VKRLHKVLRPFLLRRVKVDVEKQMPKKYEHVIRCRL----SKRQRCLYDDFMAQTTTKET 889
Query: 85 SNRSNEISHMSMFMMLRKMANHP 107
+ +S +++ M LRK+ NHP
Sbjct: 890 LATGHFMSVINILMQLRKVCNHP 912
Score = 45 (20.9 bits), Expect = 2.4e-05, Sum P(2) = 2.4e-05
Identities = 17/68 (25%), Positives = 30/68 (44%)
Query: 6 EDDARYEDKRKEQATFEVEQVDQAKRIISPFMLRRLKKDVLTELPKKTALVIKVPMIPSQ 65
E+ AR E++ K + D + + + + K+ E +K AL + + I Q
Sbjct: 180 EERARREEQAKLRRIASAMAKDVRQFWSNVEKVVQFKQQSRLEEKRKKALDLHLDFIVGQ 239
Query: 66 AEKYRGLM 73
EKY L+
Sbjct: 240 TEKYSDLL 247
Score = 41 (19.5 bits), Expect = 6.1e-05, Sum P(2) = 6.1e-05
Identities = 9/21 (42%), Positives = 13/21 (61%)
Query: 128 EDPTYKGTNPQYILEDISWLS 148
E P KG + Y+ E++ WLS
Sbjct: 129 EPPRPKG-HWDYLCEEMQWLS 148
Score = 38 (18.4 bits), Expect = 0.00012, Sum P(2) = 0.00012
Identities = 7/27 (25%), Positives = 14/27 (51%)
Query: 11 YEDKRKEQATFEVEQVDQAKRIISPFM 37
Y + ++ F +++DQ II F+
Sbjct: 1962 YTEAARQAVLFPQQRLDQLSEIIERFI 1988
Score = 36 (17.7 bits), Expect = 0.00020, Sum P(2) = 0.00020
Identities = 7/17 (41%), Positives = 12/17 (70%)
Query: 12 EDKRKEQATFEVEQVDQ 28
E+KRK Q + +E++ Q
Sbjct: 1901 EEKRKRQRSERLERIFQ 1917
>UNIPROTKB|F1N734 [details] [associations]
symbol:CHD6 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0005634 "nucleus" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0003682 "chromatin binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001005
InterPro:IPR001650 InterPro:IPR002464 InterPro:IPR006576
Pfam:PF00176 Pfam:PF00271 Pfam:PF07533 PROSITE:PS00690
PROSITE:PS50013 PROSITE:PS51194 SMART:SM00298 SMART:SM00490
SMART:SM00717 Pfam:PF00385 GO:GO:0005524 GO:GO:0005634
GO:GO:0003677 GO:GO:0003682 InterPro:IPR016197 SUPFAM:SSF54160
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR023780 OMA:CKWATME GeneTree:ENSGT00560000077077
EMBL:DAAA02036652 EMBL:DAAA02036653 EMBL:DAAA02036654
EMBL:DAAA02036655 IPI:IPI00924240 Ensembl:ENSBTAT00000061177
ArrayExpress:F1N734 Uniprot:F1N734
Length = 2720
Score = 130 (50.8 bits), Expect = 1.6e-12, Sum P(2) = 1.6e-12
Identities = 32/85 (37%), Positives = 49/85 (57%)
Query: 24 EQVDQAKRIISPFMLRRLKKDVLTELPKKTALVIKVPMIPSQAEKYRGLME-DFKKTANP 82
EQV + + I+ P MLRRLK DV L K +I+V + Q + YR ++E +F +
Sbjct: 665 EQVKKLQSILKPMMLRRLKDDVEKNLAPKQETIIEVELTNIQKKYYRAILEKNFSFLS-- 722
Query: 83 EGSNRSNEISHMSMFMMLRKMANHP 107
+G+N+ N + ++ M LRK NHP
Sbjct: 723 KGANQHNMPNLINTMMELRKCCNHP 747
Score = 118 (46.6 bits), Expect = 1.6e-12, Sum P(2) = 1.6e-12
Identities = 25/61 (40%), Positives = 39/61 (63%)
Query: 173 LVVESGKLKKLDEILPDLKKNGHRVLIFSQFIFVLDILGHYMDIRGWRHLRLDGATQVSS 232
++ +GKL +D++LP L GH+VLIFSQ + LDIL Y+ R + + R+DG + +
Sbjct: 777 MIQAAGKLVLIDKLLPKLIAGGHKVLIFSQMVRCLDILEDYLIQRRYTYERIDGRVRGNL 836
Query: 233 R 233
R
Sbjct: 837 R 837
Score = 39 (18.8 bits), Expect = 0.00021, Sum P(2) = 0.00021
Identities = 9/18 (50%), Positives = 12/18 (66%)
Query: 119 LREIADCLVEDPTYKGTN 136
LR+ ADC +E P + G N
Sbjct: 2366 LRQQADCSLEVPGF-GAN 2382
>UNIPROTKB|D4A4J2 [details] [associations]
symbol:Smarca2 "Protein Smarca2" species:10116 "Rattus
norvegicus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001650 InterPro:IPR006576
InterPro:IPR014978 Pfam:PF00176 Pfam:PF00271 Pfam:PF07533
Pfam:PF08880 PROSITE:PS51194 SMART:SM00490 SMART:SM00592
SMART:SM00951 RGD:1302988 GO:GO:0005524 GO:GO:0005634 GO:GO:0006355
GO:GO:0003677 GO:GO:0004386 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 InterPro:IPR013999 InterPro:IPR014012
InterPro:IPR006562 Pfam:PF07529 SMART:SM00573 PROSITE:PS51204
IPI:IPI00777186 Ensembl:ENSRNOT00000016283 ArrayExpress:D4A4J2
Uniprot:D4A4J2
Length = 1506
Score = 124 (48.7 bits), Expect = 1.6e-12, Sum P(3) = 1.6e-12
Identities = 26/62 (41%), Positives = 36/62 (58%)
Query: 172 DLVVESGKLKKLDEILPDLKKNGHRVLIFSQFIFVLDILGHYMDIRGWRHLRLDGATQVS 231
+L SGK + LD ILP L+ HRVL+F Q ++ I+ Y R + +LRLDG T+
Sbjct: 1051 ELYRASGKFELLDRILPKLRATNHRVLLFCQMTSLMTIMEDYFAFRNFLYLRLDGTTKSE 1110
Query: 232 SR 233
R
Sbjct: 1111 DR 1112
Score = 118 (46.6 bits), Expect = 1.6e-12, Sum P(3) = 1.6e-12
Identities = 33/90 (36%), Positives = 48/90 (53%)
Query: 31 RIISPFMLRRLKKDVLTELPKKTALVIKVPMIPSQAEKYRGLMEDFKKTANPEGSNRSNE 90
+++ PF+LRRLKK+V ++LP+K VIK M Q YR + K +GS + +
Sbjct: 947 KVLRPFLLRRLKKEVESQLPEKVEYVIKCDMSALQKILYRHMQA--KGILLTDGSEKDKK 1004
Query: 91 -----ISHMSMFMMLRKMANHPLGLRYYFQ 115
+ M+ M LRK+ NHP Y FQ
Sbjct: 1005 GKGGAKTLMNTIMQLRKICNHP----YMFQ 1030
Score = 43 (20.2 bits), Expect = 0.00030, Sum P(3) = 0.00030
Identities = 10/24 (41%), Positives = 16/24 (66%)
Query: 156 SLKHKTLDCAKYKVP-DDLVVESG 178
S++ K L AKYK+ D V+++G
Sbjct: 1186 SVEEKILAAAKYKLNVDQKVIQAG 1209
Score = 41 (19.5 bits), Expect = 1.6e-12, Sum P(3) = 1.6e-12
Identities = 10/25 (40%), Positives = 15/25 (60%)
Query: 2 DSD-SEDDARYEDKRKEQATFEVEQ 25
DS+ SE D ED+ +E + E E+
Sbjct: 641 DSEESESDYEEEDEEEESSRQETEE 665
>UNIPROTKB|J9NSS6 [details] [associations]
symbol:CHD2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005634 "nucleus" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS50013 PROSITE:PS51194
SMART:SM00298 SMART:SM00490 Pfam:PF00385 GO:GO:0005524
GO:GO:0005634 GO:GO:0003677 GO:GO:0004386 InterPro:IPR016197
SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
InterPro:IPR023780 InterPro:IPR023779 PROSITE:PS00598
GeneTree:ENSGT00560000076896 EMBL:AAEX03002279 EMBL:AAEX03002280
Ensembl:ENSCAFT00000043290 Uniprot:J9NSS6
Length = 1379
Score = 128 (50.1 bits), Expect = 1.7e-12, Sum P(2) = 1.7e-12
Identities = 27/55 (49%), Positives = 39/55 (70%)
Query: 173 LVVESGKLKKLDEILPDLKKNGHRVLIFSQFIFVLDILGHYMDIRGWRHLRLDGA 227
L+ SGKL LD++L L++ G+RVLIFSQ + +LDIL Y+ I+ + RLDG+
Sbjct: 786 LIRSSGKLILLDKLLTRLRERGNRVLIFSQMVRMLDILAEYLTIKHYPFQRLDGS 840
Score = 114 (45.2 bits), Expect = 1.7e-12, Sum P(2) = 1.7e-12
Identities = 27/97 (27%), Positives = 51/97 (52%)
Query: 11 YEDKRKEQATFEVEQVDQAKRIISPFMLRRLKKDVLTELPKKTALVIKVPMIPSQAEKYR 70
+ED ++ +++ PF+LRR+KKDV LP K +++V M Q + Y+
Sbjct: 671 WEDFEEDHGKGRENGYQSLHKVLEPFLLRRVKKDVEKSLPAKVEQILRVEMSALQKQYYK 730
Query: 71 GLM-EDFKKTANPEGSNRSNEISHMSMFMMLRKMANH 106
++ ++K A +G+ R + +++ M L+K NH
Sbjct: 731 WILTRNYKALA--KGT-RGSTSGFLNIVMELKKCCNH 764
>UNIPROTKB|D4AD08 [details] [associations]
symbol:Chd2 "Chromodomain helicase DNA binding protein 2
(Predicted)" species:10116 "Rattus norvegicus" [GO:0003677 "DNA
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] InterPro:IPR000330 InterPro:IPR000953
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 PROSITE:PS50013
PROSITE:PS51194 SMART:SM00298 SMART:SM00490 Pfam:PF00385
GO:GO:0005524 GO:GO:0005634 GO:GO:0003677 EMBL:CH473980
GO:GO:0004386 InterPro:IPR016197 SUPFAM:SSF54160 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 InterPro:IPR023780 InterPro:IPR023779
PROSITE:PS00598 InterPro:IPR025260 Pfam:PF13907
GeneTree:ENSGT00560000076896 KO:K11367 CTD:1106 OrthoDB:EOG4QRH36
IPI:IPI00778855 RefSeq:NP_001100993.1 UniGene:Rn.225034
Ensembl:ENSRNOT00000055829 GeneID:308738 KEGG:rno:308738
RGD:1310056 NextBio:659434 Uniprot:D4AD08
Length = 1834
Score = 130 (50.8 bits), Expect = 1.8e-12, Sum P(2) = 1.8e-12
Identities = 28/60 (46%), Positives = 41/60 (68%)
Query: 168 KVPDDLVVESGKLKKLDEILPDLKKNGHRVLIFSQFIFVLDILGHYMDIRGWRHLRLDGA 227
+V L+ SGKL LD++L L++ G+RVLIFSQ + +LDIL Y+ I+ + RLDG+
Sbjct: 788 EVLQSLIRSSGKLILLDKLLTRLRERGNRVLIFSQMVRMLDILAEYLTIKHYPFQRLDGS 847
Score = 114 (45.2 bits), Expect = 1.8e-12, Sum P(2) = 1.8e-12
Identities = 27/97 (27%), Positives = 51/97 (52%)
Query: 11 YEDKRKEQATFEVEQVDQAKRIISPFMLRRLKKDVLTELPKKTALVIKVPMIPSQAEKYR 70
+ED ++ +++ PF+LRR+KKDV LP K +++V M Q + Y+
Sbjct: 678 WEDFEEDHGKGRENGYQSLHKVLEPFLLRRVKKDVEKSLPAKVEQILRVEMSALQKQYYK 737
Query: 71 GLM-EDFKKTANPEGSNRSNEISHMSMFMMLRKMANH 106
++ ++K A +G+ R + +++ M L+K NH
Sbjct: 738 WILTRNYKALA--KGT-RGSTSGFLNIVMELKKCCNH 771
>MGI|MGI:99603 [details] [associations]
symbol:Smarca2 "SWI/SNF related, matrix associated, actin
dependent regulator of chromatin, subfamily a, member 2"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000790 "nuclear chromatin" evidence=ISO]
[GO:0001105 "RNA polymerase II transcription coactivator activity"
evidence=ISO] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISO;IDA] [GO:0006325 "chromatin organization"
evidence=TAS] [GO:0006334 "nucleosome assembly" evidence=TAS]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0007399 "nervous system development"
evidence=IEA] [GO:0008285 "negative regulation of cell
proliferation" evidence=IMP] [GO:0016514 "SWI/SNF complex"
evidence=ISO;TAS] [GO:0016787 "hydrolase activity" evidence=IEA]
[GO:0016817 "hydrolase activity, acting on acid anhydrides"
evidence=IEA] [GO:0016818 "hydrolase activity, acting on acid
anhydrides, in phosphorus-containing anhydrides" evidence=IEA]
[GO:0030308 "negative regulation of cell growth" evidence=ISO]
[GO:0035887 "aortic smooth muscle cell differentiation"
evidence=IMP] [GO:0044212 "transcription regulatory region DNA
binding" evidence=ISO] [GO:0045892 "negative regulation of
transcription, DNA-dependent" evidence=ISO] [GO:0045893 "positive
regulation of transcription, DNA-dependent" evidence=ISO]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=ISO] [GO:0071564 "npBAF complex"
evidence=IDA] [GO:0071565 "nBAF complex" evidence=IDA] [GO:0071778
"WINAC complex" evidence=ISO] InterPro:IPR000330 InterPro:IPR001487
InterPro:IPR001650 InterPro:IPR006576 InterPro:IPR014978
Pfam:PF00176 Pfam:PF00271 Pfam:PF00439 Pfam:PF07533 PRINTS:PR00503
PROSITE:PS50014 PROSITE:PS51194 SMART:SM00297 SMART:SM00490
SMART:SM00592 SMART:SM00951 MGI:MGI:99603 GO:GO:0005524
GO:GO:0045892 GO:GO:0008285 GO:GO:0007399 GO:GO:0030308
GO:GO:0045944 GO:GO:0044212 GO:GO:0045111 GO:GO:0000790
GO:GO:0071564 GO:GO:0016514 GO:GO:0071565 GO:GO:0004386
GO:GO:0001105 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0006334 Gene3D:1.20.920.10 SUPFAM:SSF47370
PROSITE:PS00633 InterPro:IPR018359 GO:GO:0071778 KO:K11647
ChiTaRS:SMARCA2 InterPro:IPR013999 InterPro:IPR014012
InterPro:IPR006562 Pfam:PF07529 SMART:SM00573 PROSITE:PS51204
CTD:6595 HOGENOM:HOG000172363 HOVERGEN:HBG056636 GO:GO:0035887
EMBL:BC075641 IPI:IPI01018407 RefSeq:NP_035546.2 UniGene:Mm.313303
ProteinModelPortal:Q6DIC0 SMR:Q6DIC0 DIP:DIP-48888N STRING:Q6DIC0
PhosphoSite:Q6DIC0 PaxDb:Q6DIC0 PRIDE:Q6DIC0 GeneID:67155
KEGG:mmu:67155 UCSC:uc008hbn.1 InParanoid:Q6DIC0 OrthoDB:EOG418BMJ
NextBio:323746 Bgee:Q6DIC0 Genevestigator:Q6DIC0 Uniprot:Q6DIC0
Length = 1577
Score = 124 (48.7 bits), Expect = 1.8e-12, Sum P(3) = 1.8e-12
Identities = 26/62 (41%), Positives = 36/62 (58%)
Query: 172 DLVVESGKLKKLDEILPDLKKNGHRVLIFSQFIFVLDILGHYMDIRGWRHLRLDGATQVS 231
+L SGK + LD ILP L+ HRVL+F Q ++ I+ Y R + +LRLDG T+
Sbjct: 1049 ELYRASGKFELLDRILPKLRATNHRVLLFCQMTSLMTIMEDYFAFRNFLYLRLDGTTKSE 1108
Query: 232 SR 233
R
Sbjct: 1109 DR 1110
Score = 118 (46.6 bits), Expect = 1.8e-12, Sum P(3) = 1.8e-12
Identities = 33/90 (36%), Positives = 48/90 (53%)
Query: 31 RIISPFMLRRLKKDVLTELPKKTALVIKVPMIPSQAEKYRGLMEDFKKTANPEGSNRSNE 90
+++ PF+LRRLKK+V ++LP+K VIK M Q YR + K +GS + +
Sbjct: 945 KVLRPFLLRRLKKEVESQLPEKVEYVIKCDMSALQKILYRHMQA--KGILLTDGSEKDKK 1002
Query: 91 -----ISHMSMFMMLRKMANHPLGLRYYFQ 115
+ M+ M LRK+ NHP Y FQ
Sbjct: 1003 GKGGAKTLMNTIMQLRKICNHP----YMFQ 1028
Score = 43 (20.2 bits), Expect = 0.00035, Sum P(3) = 0.00035
Identities = 10/24 (41%), Positives = 16/24 (66%)
Query: 156 SLKHKTLDCAKYKVP-DDLVVESG 178
S++ K L AKYK+ D V+++G
Sbjct: 1184 SVEEKILAAAKYKLNVDQKVIQAG 1207
Score = 41 (19.5 bits), Expect = 1.8e-12, Sum P(3) = 1.8e-12
Identities = 10/25 (40%), Positives = 15/25 (60%)
Query: 2 DSD-SEDDARYEDKRKEQATFEVEQ 25
DS+ SE D ED+ +E + E E+
Sbjct: 639 DSEESESDYEEEDEEEESSRQETEE 663
>RGD|1302988 [details] [associations]
symbol:Smarca2 "SWI/SNF related, matrix associated, actin
dependent regulator of chromatin, subfamily a, member 2"
species:10116 "Rattus norvegicus" [GO:0000790 "nuclear chromatin"
evidence=ISO] [GO:0001105 "RNA polymerase II transcription
coactivator activity" evidence=ISO] [GO:0005634 "nucleus"
evidence=ISO] [GO:0008285 "negative regulation of cell
proliferation" evidence=ISO] [GO:0016514 "SWI/SNF complex"
evidence=ISO] [GO:0030308 "negative regulation of cell growth"
evidence=ISO] [GO:0035887 "aortic smooth muscle cell
differentiation" evidence=ISO] [GO:0043231 "intracellular
membrane-bounded organelle" evidence=ISO] [GO:0044212
"transcription regulatory region DNA binding" evidence=ISO]
[GO:0045111 "intermediate filament cytoskeleton" evidence=ISO]
[GO:0045892 "negative regulation of transcription, DNA-dependent"
evidence=ISO] [GO:0045893 "positive regulation of transcription,
DNA-dependent" evidence=ISO] [GO:0045944 "positive regulation of
transcription from RNA polymerase II promoter" evidence=ISO]
[GO:0071564 "npBAF complex" evidence=ISO] [GO:0071565 "nBAF
complex" evidence=ISO] [GO:0071778 "WINAC complex" evidence=ISO]
[GO:0005730 "nucleolus" evidence=ISO] InterPro:IPR000330
InterPro:IPR001487 InterPro:IPR001650 InterPro:IPR006576
InterPro:IPR014978 Pfam:PF00176 Pfam:PF00271 Pfam:PF00439
Pfam:PF07533 Pfam:PF08880 PRINTS:PR00503 PROSITE:PS50014
PROSITE:PS51194 SMART:SM00297 SMART:SM00490 SMART:SM00592
SMART:SM00951 RGD:1302988 GO:GO:0005524 GO:GO:0005634 GO:GO:0006355
GO:GO:0003677 GO:GO:0004386 eggNOG:COG0553 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 Gene3D:1.20.920.10 SUPFAM:SSF47370
PROSITE:PS00633 InterPro:IPR018359 KO:K11647 InterPro:IPR013999
InterPro:IPR014012 InterPro:IPR006562 Pfam:PF07529 SMART:SM00573
PROSITE:PS51204 CTD:6595 HOGENOM:HOG000172363 HOVERGEN:HBG056636
OrthoDB:EOG418BMJ IPI:IPI00464435 EMBL:AY643746
RefSeq:NP_001004446.1 UniGene:Rn.94939 ProteinModelPortal:Q6DUH4
SMR:Q6DUH4 STRING:Q6DUH4 GeneID:361745 KEGG:rno:361745
UCSC:RGD:1302988 InParanoid:Q6DUH4 NextBio:677480
Genevestigator:Q6DUH4 Uniprot:Q6DUH4
Length = 1597
Score = 124 (48.7 bits), Expect = 1.9e-12, Sum P(3) = 1.9e-12
Identities = 26/62 (41%), Positives = 36/62 (58%)
Query: 172 DLVVESGKLKKLDEILPDLKKNGHRVLIFSQFIFVLDILGHYMDIRGWRHLRLDGATQVS 231
+L SGK + LD ILP L+ HRVL+F Q ++ I+ Y R + +LRLDG T+
Sbjct: 1051 ELYRASGKFELLDRILPKLRATNHRVLLFCQMTSLMTIMEDYFAFRNFLYLRLDGTTKSE 1110
Query: 232 SR 233
R
Sbjct: 1111 DR 1112
Score = 118 (46.6 bits), Expect = 1.9e-12, Sum P(3) = 1.9e-12
Identities = 33/90 (36%), Positives = 48/90 (53%)
Query: 31 RIISPFMLRRLKKDVLTELPKKTALVIKVPMIPSQAEKYRGLMEDFKKTANPEGSNRSNE 90
+++ PF+LRRLKK+V ++LP+K VIK M Q YR + K +GS + +
Sbjct: 947 KVLRPFLLRRLKKEVESQLPEKVEYVIKCDMSALQKILYRHMQA--KGILLTDGSEKDKK 1004
Query: 91 -----ISHMSMFMMLRKMANHPLGLRYYFQ 115
+ M+ M LRK+ NHP Y FQ
Sbjct: 1005 GKGGAKTLMNTIMQLRKICNHP----YMFQ 1030
Score = 43 (20.2 bits), Expect = 0.00036, Sum P(3) = 0.00036
Identities = 10/24 (41%), Positives = 16/24 (66%)
Query: 156 SLKHKTLDCAKYKVP-DDLVVESG 178
S++ K L AKYK+ D V+++G
Sbjct: 1186 SVEEKILAAAKYKLNVDQKVIQAG 1209
Score = 41 (19.5 bits), Expect = 1.9e-12, Sum P(3) = 1.9e-12
Identities = 10/25 (40%), Positives = 15/25 (60%)
Query: 2 DSD-SEDDARYEDKRKEQATFEVEQ 25
DS+ SE D ED+ +E + E E+
Sbjct: 641 DSEESESDYEEEDEEEESSRQETEE 665
>UNIPROTKB|E9PTG1 [details] [associations]
symbol:Smarca2 "Protein Smarca2" species:10116 "Rattus
norvegicus" [GO:0000790 "nuclear chromatin" evidence=IEA]
[GO:0001105 "RNA polymerase II transcription coactivator activity"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008285 "negative
regulation of cell proliferation" evidence=IEA] [GO:0016514
"SWI/SNF complex" evidence=IEA] [GO:0030308 "negative regulation of
cell growth" evidence=IEA] [GO:0035887 "aortic smooth muscle cell
differentiation" evidence=IEA] [GO:0044212 "transcription
regulatory region DNA binding" evidence=IEA] [GO:0045111
"intermediate filament cytoskeleton" evidence=IEA] [GO:0045892
"negative regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0071564 "npBAF complex" evidence=IEA] [GO:0071565 "nBAF
complex" evidence=IEA] [GO:0071778 "WINAC complex" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001487 InterPro:IPR001650
InterPro:IPR006576 InterPro:IPR014978 Pfam:PF00176 Pfam:PF00271
Pfam:PF00439 Pfam:PF07533 Pfam:PF08880 PRINTS:PR00503
PROSITE:PS50014 PROSITE:PS51194 SMART:SM00297 SMART:SM00490
SMART:SM00592 SMART:SM00951 RGD:1302988 GO:GO:0005524 GO:GO:0045892
GO:GO:0008285 GO:GO:0030308 GO:GO:0045944 GO:GO:0044212
GO:GO:0045111 GO:GO:0000790 GO:GO:0071564 GO:GO:0016514
GO:GO:0071565 GO:GO:0004386 GO:GO:0001105 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 Gene3D:1.20.920.10 SUPFAM:SSF47370
PROSITE:PS00633 InterPro:IPR018359 GO:GO:0071778
GeneTree:ENSGT00550000074659 InterPro:IPR013999 InterPro:IPR014012
InterPro:IPR006562 Pfam:PF07529 SMART:SM00573 PROSITE:PS51204
OMA:PQEGMHQ GO:GO:0035887 IPI:IPI00464435
Ensembl:ENSRNOT00000016740 ArrayExpress:E9PTG1 Uniprot:E9PTG1
Length = 1597
Score = 124 (48.7 bits), Expect = 1.9e-12, Sum P(3) = 1.9e-12
Identities = 26/62 (41%), Positives = 36/62 (58%)
Query: 172 DLVVESGKLKKLDEILPDLKKNGHRVLIFSQFIFVLDILGHYMDIRGWRHLRLDGATQVS 231
+L SGK + LD ILP L+ HRVL+F Q ++ I+ Y R + +LRLDG T+
Sbjct: 1051 ELYRASGKFELLDRILPKLRATNHRVLLFCQMTSLMTIMEDYFAFRNFLYLRLDGTTKSE 1110
Query: 232 SR 233
R
Sbjct: 1111 DR 1112
Score = 118 (46.6 bits), Expect = 1.9e-12, Sum P(3) = 1.9e-12
Identities = 33/90 (36%), Positives = 48/90 (53%)
Query: 31 RIISPFMLRRLKKDVLTELPKKTALVIKVPMIPSQAEKYRGLMEDFKKTANPEGSNRSNE 90
+++ PF+LRRLKK+V ++LP+K VIK M Q YR + K +GS + +
Sbjct: 947 KVLRPFLLRRLKKEVESQLPEKVEYVIKCDMSALQKILYRHMQA--KGILLTDGSEKDKK 1004
Query: 91 -----ISHMSMFMMLRKMANHPLGLRYYFQ 115
+ M+ M LRK+ NHP Y FQ
Sbjct: 1005 GKGGAKTLMNTIMQLRKICNHP----YMFQ 1030
Score = 43 (20.2 bits), Expect = 0.00036, Sum P(3) = 0.00036
Identities = 10/24 (41%), Positives = 16/24 (66%)
Query: 156 SLKHKTLDCAKYKVP-DDLVVESG 178
S++ K L AKYK+ D V+++G
Sbjct: 1186 SVEEKILAAAKYKLNVDQKVIQAG 1209
Score = 41 (19.5 bits), Expect = 1.9e-12, Sum P(3) = 1.9e-12
Identities = 10/25 (40%), Positives = 15/25 (60%)
Query: 2 DSD-SEDDARYEDKRKEQATFEVEQ 25
DS+ SE D ED+ +E + E E+
Sbjct: 641 DSEESESDYEEEDEEEESSRQETEE 665
>UNIPROTKB|A5PKK5 [details] [associations]
symbol:SMARCA2 "SMARCA2 protein" species:9913 "Bos taurus"
[GO:0071778 "WINAC complex" evidence=IEA] [GO:0071565 "nBAF
complex" evidence=IEA] [GO:0071564 "npBAF complex" evidence=IEA]
[GO:0045892 "negative regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0045111 "intermediate filament cytoskeleton"
evidence=IEA] [GO:0044212 "transcription regulatory region DNA
binding" evidence=IEA] [GO:0035887 "aortic smooth muscle cell
differentiation" evidence=IEA] [GO:0030308 "negative regulation of
cell growth" evidence=IEA] [GO:0016514 "SWI/SNF complex"
evidence=IEA] [GO:0008285 "negative regulation of cell
proliferation" evidence=IEA] [GO:0001105 "RNA polymerase II
transcription coactivator activity" evidence=IEA] [GO:0000790
"nuclear chromatin" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001487 InterPro:IPR001650
InterPro:IPR006576 InterPro:IPR014978 Pfam:PF00176 Pfam:PF00271
Pfam:PF00439 Pfam:PF07533 Pfam:PF08880 PRINTS:PR00503
PROSITE:PS50014 PROSITE:PS51194 SMART:SM00297 SMART:SM00490
SMART:SM00592 SMART:SM00951 GO:GO:0005524 GO:GO:0045892
GO:GO:0008285 GO:GO:0030308 GO:GO:0045944 GO:GO:0044212
GO:GO:0045111 GO:GO:0000790 GO:GO:0071564 GO:GO:0016514
GO:GO:0071565 GO:GO:0004386 GO:GO:0001105 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 Gene3D:1.20.920.10
SUPFAM:SSF47370 PROSITE:PS00633 InterPro:IPR018359 GO:GO:0071778
KO:K11647 GeneTree:ENSGT00550000074659 InterPro:IPR013999
InterPro:IPR014012 InterPro:IPR006562 Pfam:PF07529 SMART:SM00573
PROSITE:PS51204 CTD:6595 HOGENOM:HOG000172363 HOVERGEN:HBG056636
OMA:PQEGMHQ GO:GO:0035887 OrthoDB:EOG418BMJ EMBL:DAAA02022747
EMBL:DAAA02022748 EMBL:DAAA02022749 EMBL:BC142521 IPI:IPI00854472
RefSeq:NP_001092585.1 UniGene:Bt.63204 SMR:A5PKK5 STRING:A5PKK5
Ensembl:ENSBTAT00000035681 GeneID:540904 KEGG:bta:540904
InParanoid:A5PKK5 NextBio:20878906 Uniprot:A5PKK5
Length = 1554
Score = 124 (48.7 bits), Expect = 2.2e-12, Sum P(3) = 2.2e-12
Identities = 26/62 (41%), Positives = 36/62 (58%)
Query: 172 DLVVESGKLKKLDEILPDLKKNGHRVLIFSQFIFVLDILGHYMDIRGWRHLRLDGATQVS 231
+L SGK + LD ILP L+ HRVL+F Q ++ I+ Y R + +LRLDG T+
Sbjct: 1026 ELYRASGKFELLDRILPKLRATNHRVLLFCQMTSLMTIMEDYFAFRNFLYLRLDGTTKSE 1085
Query: 232 SR 233
R
Sbjct: 1086 DR 1087
Score = 118 (46.6 bits), Expect = 2.2e-12, Sum P(3) = 2.2e-12
Identities = 33/90 (36%), Positives = 48/90 (53%)
Query: 31 RIISPFMLRRLKKDVLTELPKKTALVIKVPMIPSQAEKYRGLMEDFKKTANPEGSNRSNE 90
+++ PF+LRRLKK+V ++LP+K VIK M Q YR + K +GS + +
Sbjct: 922 KVLRPFLLRRLKKEVESQLPEKVEYVIKCDMSALQKILYRHMQA--KGILLTDGSEKDKK 979
Query: 91 -----ISHMSMFMMLRKMANHPLGLRYYFQ 115
+ M+ M LRK+ NHP Y FQ
Sbjct: 980 GKGGAKTLMNTIMQLRKICNHP----YMFQ 1005
Score = 43 (20.2 bits), Expect = 0.00042, Sum P(3) = 0.00042
Identities = 10/24 (41%), Positives = 16/24 (66%)
Query: 156 SLKHKTLDCAKYKVP-DDLVVESG 178
S++ K L AKYK+ D V+++G
Sbjct: 1161 SVEEKILAAAKYKLNVDQKVIQAG 1184
Score = 40 (19.1 bits), Expect = 2.2e-12, Sum P(3) = 2.2e-12
Identities = 11/26 (42%), Positives = 17/26 (65%)
Query: 3 SDSED-DARYE--DKRKEQATFEVEQ 25
SDSE+ D+ YE D+ +E + E E+
Sbjct: 615 SDSEESDSDYEEEDEEEESSRQETEE 640
>UNIPROTKB|F1SJG5 [details] [associations]
symbol:SMARCA2 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0071778 "WINAC complex" evidence=IEA] [GO:0071565 "nBAF
complex" evidence=IEA] [GO:0071564 "npBAF complex" evidence=IEA]
[GO:0045892 "negative regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0045111 "intermediate filament cytoskeleton"
evidence=IEA] [GO:0044212 "transcription regulatory region DNA
binding" evidence=IEA] [GO:0035887 "aortic smooth muscle cell
differentiation" evidence=IEA] [GO:0030308 "negative regulation of
cell growth" evidence=IEA] [GO:0016514 "SWI/SNF complex"
evidence=IEA] [GO:0008285 "negative regulation of cell
proliferation" evidence=IEA] [GO:0001105 "RNA polymerase II
transcription coactivator activity" evidence=IEA] [GO:0000790
"nuclear chromatin" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001487 InterPro:IPR001650
InterPro:IPR006576 InterPro:IPR014978 Pfam:PF00176 Pfam:PF00271
Pfam:PF00439 Pfam:PF07533 Pfam:PF08880 PRINTS:PR00503
PROSITE:PS50014 PROSITE:PS51194 SMART:SM00297 SMART:SM00490
SMART:SM00592 SMART:SM00951 GO:GO:0005524 GO:GO:0045892
GO:GO:0008285 GO:GO:0030308 GO:GO:0045944 GO:GO:0044212
GO:GO:0045111 GO:GO:0000790 GO:GO:0071564 GO:GO:0016514
GO:GO:0071565 GO:GO:0004386 GO:GO:0001105 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 Gene3D:1.20.920.10 SUPFAM:SSF47370
PROSITE:PS00633 InterPro:IPR018359 GO:GO:0071778
GeneTree:ENSGT00550000074659 OMA:PQEGMHQ GO:GO:0035887
EMBL:CT998562 EMBL:CU062411 Ensembl:ENSSSCT00000005766
Uniprot:F1SJG5
Length = 1556
Score = 124 (48.7 bits), Expect = 2.2e-12, Sum P(3) = 2.2e-12
Identities = 26/62 (41%), Positives = 36/62 (58%)
Query: 172 DLVVESGKLKKLDEILPDLKKNGHRVLIFSQFIFVLDILGHYMDIRGWRHLRLDGATQVS 231
+L SGK + LD ILP L+ HRVL+F Q ++ I+ Y R + +LRLDG T+
Sbjct: 1028 ELYRASGKFELLDRILPKLRATNHRVLLFCQMTSLMTIMEDYFAFRNFLYLRLDGTTKSE 1087
Query: 232 SR 233
R
Sbjct: 1088 DR 1089
Score = 118 (46.6 bits), Expect = 2.2e-12, Sum P(3) = 2.2e-12
Identities = 33/90 (36%), Positives = 48/90 (53%)
Query: 31 RIISPFMLRRLKKDVLTELPKKTALVIKVPMIPSQAEKYRGLMEDFKKTANPEGSNRSNE 90
+++ PF+LRRLKK+V ++LP+K VIK M Q YR + K +GS + +
Sbjct: 924 KVLRPFLLRRLKKEVESQLPEKVEYVIKCDMSALQKILYRHMQA--KGILLTDGSEKDKK 981
Query: 91 -----ISHMSMFMMLRKMANHPLGLRYYFQ 115
+ M+ M LRK+ NHP Y FQ
Sbjct: 982 GKGGAKTLMNTIMQLRKICNHP----YMFQ 1007
Score = 43 (20.2 bits), Expect = 0.00042, Sum P(3) = 0.00042
Identities = 10/24 (41%), Positives = 16/24 (66%)
Query: 156 SLKHKTLDCAKYKVP-DDLVVESG 178
S++ K L AKYK+ D V+++G
Sbjct: 1163 SVEEKILAAAKYKLNVDQKVIQAG 1186
Score = 40 (19.1 bits), Expect = 2.2e-12, Sum P(3) = 2.2e-12
Identities = 11/26 (42%), Positives = 17/26 (65%)
Query: 3 SDSED-DARYE--DKRKEQATFEVEQ 25
SDSE+ D+ YE D+ +E + E E+
Sbjct: 617 SDSEESDSDYEEEDEEEESSRQETEE 642
Score = 39 (18.8 bits), Expect = 0.00034, Sum P(2) = 0.00034
Identities = 10/36 (27%), Positives = 19/36 (52%)
Query: 8 DARYEDKRKEQATFEVEQVDQAKRIISPFMLRRLKK 43
+AR +K ++Q E E+ + K + ++ RL K
Sbjct: 408 EARMTEKLEKQQKIEQERKRRQKHQVPGALMGRLPK 443
>UNIPROTKB|Q9NW36 [details] [associations]
symbol:HELLS "cDNA FLJ10339 fis, clone NT2RM2000740, weakly
similar to POSSIBLE GLOBAL TRANSCRIPTION ACTIVATOR SNF2L"
species:9606 "Homo sapiens" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] InterPro:IPR001650
Pfam:PF00271 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 GO:GO:0004386 EMBL:AL138759 UniGene:Hs.655830
HGNC:HGNC:4861 ChiTaRS:HELLS EMBL:AK001201 IPI:IPI00012073
SMR:Q9NW36 STRING:Q9NW36 Ensembl:ENST00000371327
HOGENOM:HOG000198825 HOVERGEN:HBG072129 Uniprot:Q9NW36
Length = 310
Score = 162 (62.1 bits), Expect = 2.3e-12, Sum P(2) = 2.3e-12
Identities = 32/68 (47%), Positives = 45/68 (66%)
Query: 166 KYKVPDDLVVESGKLKKLDEILPDLKKNGHRVLIFSQFIFVLDILGHYMDIRGWRHLRLD 225
++K+ ++LV SGK LD +LP+LKK GH+VL+FSQ +LDIL Y +R + RLD
Sbjct: 24 EFKIDEELVTNSGKFLILDRMLPELKKRGHKVLLFSQMTSMLDILMDYCHLRDFNFSRLD 83
Query: 226 GATQVSSR 233
G+ S R
Sbjct: 84 GSMSYSER 91
Score = 45 (20.9 bits), Expect = 2.3e-12, Sum P(2) = 2.3e-12
Identities = 8/15 (53%), Positives = 10/15 (66%)
Query: 98 MMLRKMANHPLGLRY 112
M+LRK NHP + Y
Sbjct: 2 MLLRKCCNHPYLIEY 16
>UNIPROTKB|F1Q2U2 [details] [associations]
symbol:CHD1L "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0003677
"DNA binding" evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR002464 Pfam:PF00176 Pfam:PF00271 PROSITE:PS00690
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003677
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 InterPro:IPR002589
PROSITE:PS51154 GO:GO:0008026 OMA:TCQTIAL
GeneTree:ENSGT00670000098110 EMBL:AAEX03011032
Ensembl:ENSCAFT00000017488 Uniprot:F1Q2U2
Length = 898
Score = 130 (50.8 bits), Expect = 2.3e-12, Sum P(2) = 2.3e-12
Identities = 33/110 (30%), Positives = 57/110 (51%)
Query: 10 RYEDKRKEQATFEVEQVDQAKRIISPFMLRRLKKDVLTELPKKTALVIKVPMIPSQAEKY 69
RY+D KE + + +++ PF+LRR+K +V TELPKKT +V+ M Q + Y
Sbjct: 238 RYQDIEKES-----DSASELHKLLQPFLLRRVKAEVATELPKKTEVVLYHGMSALQKKYY 292
Query: 70 RGLMEDFKKTANPEGSNRSNEISHMSMFMMLRKMANHPLGLRYYFQENTL 119
+ ++ K + S + ++ ++ LRK +HP Y F+ T+
Sbjct: 293 KAIL---MKDLDAFESEMAKKVKLQNVLSQLRKCVDHP----YLFEGETV 335
Score = 106 (42.4 bits), Expect = 2.3e-12, Sum P(2) = 2.3e-12
Identities = 21/40 (52%), Positives = 28/40 (70%)
Query: 194 GHRVLIFSQFIFVLDILGHYMDIRGWRHLRLDGATQVSSR 233
GHRVL+FSQ +LDIL YMD RG+ + R+DG+ + R
Sbjct: 364 GHRVLLFSQMTQMLDILQDYMDYRGYSYERVDGSVRGEER 403
>UNIPROTKB|P51531 [details] [associations]
symbol:SMARCA2 "Probable global transcription activator
SNF2L2" species:9606 "Homo sapiens" [GO:0004386 "helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0007399
"nervous system development" evidence=IEA] [GO:0008285 "negative
regulation of cell proliferation" evidence=IEA] [GO:0035887 "aortic
smooth muscle cell differentiation" evidence=IEA] [GO:0016514
"SWI/SNF complex" evidence=IDA] [GO:0071564 "npBAF complex"
evidence=ISS] [GO:0071565 "nBAF complex" evidence=ISS] [GO:0005515
"protein binding" evidence=IPI] [GO:0045893 "positive regulation of
transcription, DNA-dependent" evidence=IMP;IDA] [GO:0001105 "RNA
polymerase II transcription coactivator activity" evidence=IDA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0044212 "transcription
regulatory region DNA binding" evidence=IDA] [GO:0003713
"transcription coactivator activity" evidence=TAS] [GO:0006357
"regulation of transcription from RNA polymerase II promoter"
evidence=TAS] [GO:0005654 "nucleoplasm" evidence=TAS] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=TAS]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=IDA;TAS] [GO:0071778 "WINAC
complex" evidence=IDA] [GO:0045892 "negative regulation of
transcription, DNA-dependent" evidence=IDA] [GO:0000790 "nuclear
chromatin" evidence=IDA] [GO:0030308 "negative regulation of cell
growth" evidence=IMP] [GO:0006338 "chromatin remodeling"
evidence=TAS] [GO:0008094 "DNA-dependent ATPase activity"
evidence=TAS] [GO:0000122 "negative regulation of transcription
from RNA polymerase II promoter" evidence=TAS] [GO:0005730
"nucleolus" evidence=IDA] [GO:0043231 "intracellular
membrane-bounded organelle" evidence=IDA] [GO:0045111 "intermediate
filament cytoskeleton" evidence=IDA] InterPro:IPR000330
InterPro:IPR001487 InterPro:IPR001650 InterPro:IPR006576
InterPro:IPR014978 Pfam:PF00176 Pfam:PF00271 Pfam:PF00439
Pfam:PF07533 Pfam:PF08880 PRINTS:PR00503 PROSITE:PS50014
PROSITE:PS51194 SMART:SM00297 SMART:SM00490 SMART:SM00592
SMART:SM00951 GO:GO:0005524 GO:GO:0008285 GO:GO:0007399
GO:GO:0005654 GO:GO:0030308 GO:GO:0006338 GO:GO:0000122
GO:GO:0044212 GO:GO:0045111 GO:GO:0000790 GO:GO:0071564
GO:GO:0016514 GO:GO:0071565 EMBL:CH471071 GO:GO:0004386
Pathway_Interaction_DB:ar_tf_pathway GO:GO:0001105 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 Gene3D:1.20.920.10
SUPFAM:SSF47370 PROSITE:PS00633 InterPro:IPR018359 GO:GO:0071778
KO:K11647 ChiTaRS:SMARCA2 InterPro:IPR013999 InterPro:IPR014012
InterPro:IPR006562 Pfam:PF07529 SMART:SM00573 PROSITE:PS51204
GO:GO:0008094 EMBL:X72889 EMBL:D26155 EMBL:AL359076 EMBL:AL138755
IPI:IPI00386718 IPI:IPI00514648 PIR:S39580 PIR:S45251
RefSeq:NP_003061.3 RefSeq:NP_620614.2 UniGene:Hs.298990 PDB:2DAT
PDBsum:2DAT ProteinModelPortal:P51531 SMR:P51531 DIP:DIP-29005N
IntAct:P51531 MINT:MINT-1898892 STRING:P51531 PhosphoSite:P51531
DMDM:212276472 PaxDb:P51531 PRIDE:P51531 DNASU:6595
Ensembl:ENST00000349721 Ensembl:ENST00000357248
Ensembl:ENST00000382194 Ensembl:ENST00000382203 GeneID:6595
KEGG:hsa:6595 UCSC:uc003zhc.3 UCSC:uc003zhd.3 CTD:6595
GeneCards:GC09P002005 HGNC:HGNC:11098 HPA:HPA029981 MIM:600014
MIM:601358 neXtProt:NX_P51531 Orphanet:3051 PharmGKB:PA35948
HOGENOM:HOG000172363 HOVERGEN:HBG056636 InParanoid:P51531
OMA:PQEGMHQ PhylomeDB:P51531 EvolutionaryTrace:P51531
GenomeRNAi:6595 NextBio:25649 PMAP-CutDB:P51531 ArrayExpress:P51531
Bgee:P51531 CleanEx:HS_SMARCA2 Genevestigator:P51531
GermOnline:ENSG00000080503 GO:GO:0035887 Uniprot:P51531
Length = 1590
Score = 124 (48.7 bits), Expect = 2.4e-12, Sum P(3) = 2.4e-12
Identities = 26/62 (41%), Positives = 36/62 (58%)
Query: 172 DLVVESGKLKKLDEILPDLKKNGHRVLIFSQFIFVLDILGHYMDIRGWRHLRLDGATQVS 231
+L SGK + LD ILP L+ HRVL+F Q ++ I+ Y R + +LRLDG T+
Sbjct: 1044 ELYRASGKFELLDRILPKLRATNHRVLLFCQMTSLMTIMEDYFAFRNFLYLRLDGTTKSE 1103
Query: 232 SR 233
R
Sbjct: 1104 DR 1105
Score = 118 (46.6 bits), Expect = 2.4e-12, Sum P(3) = 2.4e-12
Identities = 33/90 (36%), Positives = 48/90 (53%)
Query: 31 RIISPFMLRRLKKDVLTELPKKTALVIKVPMIPSQAEKYRGLMEDFKKTANPEGSNRSNE 90
+++ PF+LRRLKK+V ++LP+K VIK M Q YR + K +GS + +
Sbjct: 940 KVLRPFLLRRLKKEVESQLPEKVEYVIKCDMSALQKILYRHMQA--KGILLTDGSEKDKK 997
Query: 91 -----ISHMSMFMMLRKMANHPLGLRYYFQ 115
+ M+ M LRK+ NHP Y FQ
Sbjct: 998 GKGGAKTLMNTIMQLRKICNHP----YMFQ 1023
Score = 43 (20.2 bits), Expect = 0.00045, Sum P(3) = 0.00045
Identities = 10/24 (41%), Positives = 16/24 (66%)
Query: 156 SLKHKTLDCAKYKVP-DDLVVESG 178
S++ K L AKYK+ D V+++G
Sbjct: 1179 SVEEKILAAAKYKLNVDQKVIQAG 1202
Score = 40 (19.1 bits), Expect = 2.4e-12, Sum P(3) = 2.4e-12
Identities = 11/26 (42%), Positives = 17/26 (65%)
Query: 3 SDSED-DARYE--DKRKEQATFEVEQ 25
SDSE+ D+ YE D+ +E + E E+
Sbjct: 633 SDSEESDSDYEEEDEEEESSRQETEE 658
>GENEDB_PFALCIPARUM|PF11_0053 [details] [associations]
symbol:PF11_0053 "PfSNF2L" species:5833
"Plasmodium falciparum" [GO:0006338 "chromatin remodeling"
evidence=ISS] [GO:0008094 "DNA-dependent ATPase activity"
evidence=ISS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=ISS] [GO:0008026 "ATP-dependent helicase
activity" evidence=ISS] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR009057 Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0006355 GO:GO:0003677
Gene3D:1.10.10.60 SUPFAM:SSF46689 GO:GO:0006338 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0016585 GO:GO:0008026
EMBL:AE014186 GO:GO:0008094 KO:K01509 RefSeq:XP_001347729.1
ProteinModelPortal:Q8IIW0 IntAct:Q8IIW0 MINT:MINT-1585538
EnsemblProtists:PF11_0053:mRNA GeneID:810605 KEGG:pfa:PF11_0053
EuPathDB:PlasmoDB:PF3D7_1104200 HOGENOM:HOG000282197
ProtClustDB:CLSZ2444952 Uniprot:Q8IIW0
Length = 1426
Score = 130 (50.8 bits), Expect = 2.6e-12, Sum P(2) = 2.6e-12
Identities = 27/61 (44%), Positives = 39/61 (63%)
Query: 173 LVVESGKLKKLDEILPDLKKNGHRVLIFSQFIFVLDILGHYMDIRGWRHLRLDGATQVSS 232
L+ SGK+ LD++LP LKK RVL+FSQ +LDI+ Y + + +LR+DG+T
Sbjct: 621 LIETSGKMSLLDKLLPRLKKENSRVLLFSQMTRLLDIIDDYCRWKNYPYLRIDGSTPGDE 680
Query: 233 R 233
R
Sbjct: 681 R 681
Score = 110 (43.8 bits), Expect = 2.6e-12, Sum P(2) = 2.6e-12
Identities = 33/107 (30%), Positives = 50/107 (46%)
Query: 2 DSDSEDDARYE-DKRKEQATFEVEQVDQAKRIISPFMLRRLKKDVLTELPKKTALVIKVP 60
D+ E D + K + E + Q I+ PFMLRRLK +V LP K + I V
Sbjct: 501 DNSEEFDNLFNISKISTNDNKQSEIITQLHTILKPFMLRRLKVEVEQSLPPKREIYIFVG 560
Query: 61 MIPSQAEKYRGLMEDFKKTANPEGSNRSNEISHMSMFMMLRKMANHP 107
M Q + Y ++ N ++ N++ +++ M LRK NHP
Sbjct: 561 MSKLQKKLYSDILSKNIDVLNAMTGSK-NQM--LNILMQLRKCCNHP 604
Score = 51 (23.0 bits), Expect = 0.00077, Sum P(2) = 0.00077
Identities = 15/50 (30%), Positives = 28/50 (56%)
Query: 152 IHQLSLKHKTLDCAKYKVP-DDLVVESGKLKKLDEILPDLKKNGHRVLIF 200
+ Q S++ K ++ A K+ D L+++ GKL L+ + K+ H +L F
Sbjct: 751 VTQNSVEEKIVERAAKKLKLDSLIIQKGKLN-LNSAKENNKQELHDILNF 799
Score = 41 (19.5 bits), Expect = 3.3e-05, Sum P(2) = 3.3e-05
Identities = 9/33 (27%), Positives = 18/33 (54%)
Query: 126 LVEDP-TYKGTNPQYILEDISWLSDYDIHQLSL 157
+++ P GT Y LE ++WL Y +++ +
Sbjct: 311 ILKQPMNINGTMKPYQLEGLNWL--YQLYRFKI 341
>UNIPROTKB|Q8IIW0 [details] [associations]
symbol:PF11_0053 "PfSNF2L" species:36329 "Plasmodium
falciparum 3D7" [GO:0006338 "chromatin remodeling" evidence=ISS]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=ISS] [GO:0008026 "ATP-dependent helicase activity"
evidence=ISS] [GO:0008094 "DNA-dependent ATPase activity"
evidence=ISS] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR009057 Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0006355 GO:GO:0003677
Gene3D:1.10.10.60 SUPFAM:SSF46689 GO:GO:0006338 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0016585 GO:GO:0008026
EMBL:AE014186 GO:GO:0008094 KO:K01509 RefSeq:XP_001347729.1
ProteinModelPortal:Q8IIW0 IntAct:Q8IIW0 MINT:MINT-1585538
EnsemblProtists:PF11_0053:mRNA GeneID:810605 KEGG:pfa:PF11_0053
EuPathDB:PlasmoDB:PF3D7_1104200 HOGENOM:HOG000282197
ProtClustDB:CLSZ2444952 Uniprot:Q8IIW0
Length = 1426
Score = 130 (50.8 bits), Expect = 2.6e-12, Sum P(2) = 2.6e-12
Identities = 27/61 (44%), Positives = 39/61 (63%)
Query: 173 LVVESGKLKKLDEILPDLKKNGHRVLIFSQFIFVLDILGHYMDIRGWRHLRLDGATQVSS 232
L+ SGK+ LD++LP LKK RVL+FSQ +LDI+ Y + + +LR+DG+T
Sbjct: 621 LIETSGKMSLLDKLLPRLKKENSRVLLFSQMTRLLDIIDDYCRWKNYPYLRIDGSTPGDE 680
Query: 233 R 233
R
Sbjct: 681 R 681
Score = 110 (43.8 bits), Expect = 2.6e-12, Sum P(2) = 2.6e-12
Identities = 33/107 (30%), Positives = 50/107 (46%)
Query: 2 DSDSEDDARYE-DKRKEQATFEVEQVDQAKRIISPFMLRRLKKDVLTELPKKTALVIKVP 60
D+ E D + K + E + Q I+ PFMLRRLK +V LP K + I V
Sbjct: 501 DNSEEFDNLFNISKISTNDNKQSEIITQLHTILKPFMLRRLKVEVEQSLPPKREIYIFVG 560
Query: 61 MIPSQAEKYRGLMEDFKKTANPEGSNRSNEISHMSMFMMLRKMANHP 107
M Q + Y ++ N ++ N++ +++ M LRK NHP
Sbjct: 561 MSKLQKKLYSDILSKNIDVLNAMTGSK-NQM--LNILMQLRKCCNHP 604
Score = 51 (23.0 bits), Expect = 0.00077, Sum P(2) = 0.00077
Identities = 15/50 (30%), Positives = 28/50 (56%)
Query: 152 IHQLSLKHKTLDCAKYKVP-DDLVVESGKLKKLDEILPDLKKNGHRVLIF 200
+ Q S++ K ++ A K+ D L+++ GKL L+ + K+ H +L F
Sbjct: 751 VTQNSVEEKIVERAAKKLKLDSLIIQKGKLN-LNSAKENNKQELHDILNF 799
Score = 41 (19.5 bits), Expect = 3.3e-05, Sum P(2) = 3.3e-05
Identities = 9/33 (27%), Positives = 18/33 (54%)
Query: 126 LVEDP-TYKGTNPQYILEDISWLSDYDIHQLSL 157
+++ P GT Y LE ++WL Y +++ +
Sbjct: 311 ILKQPMNINGTMKPYQLEGLNWL--YQLYRFKI 341
>UNIPROTKB|J9NX79 [details] [associations]
symbol:CHD2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005634 "nucleus" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS50013 PROSITE:PS51194
SMART:SM00298 SMART:SM00490 Pfam:PF00385 GO:GO:0005524
GO:GO:0005634 GO:GO:0003677 GO:GO:0004386 InterPro:IPR016197
SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
InterPro:IPR023780 InterPro:IPR023779 PROSITE:PS00598
InterPro:IPR025260 Pfam:PF13907 GeneTree:ENSGT00560000076896
EMBL:AAEX03002279 EMBL:AAEX03002280 Ensembl:ENSCAFT00000044612
Uniprot:J9NX79
Length = 1689
Score = 128 (50.1 bits), Expect = 2.6e-12, Sum P(2) = 2.6e-12
Identities = 27/55 (49%), Positives = 39/55 (70%)
Query: 173 LVVESGKLKKLDEILPDLKKNGHRVLIFSQFIFVLDILGHYMDIRGWRHLRLDGA 227
L+ SGKL LD++L L++ G+RVLIFSQ + +LDIL Y+ I+ + RLDG+
Sbjct: 755 LIRSSGKLILLDKLLTRLRERGNRVLIFSQMVRMLDILAEYLTIKHYPFQRLDGS 809
Score = 114 (45.2 bits), Expect = 2.6e-12, Sum P(2) = 2.6e-12
Identities = 27/97 (27%), Positives = 51/97 (52%)
Query: 11 YEDKRKEQATFEVEQVDQAKRIISPFMLRRLKKDVLTELPKKTALVIKVPMIPSQAEKYR 70
+ED ++ +++ PF+LRR+KKDV LP K +++V M Q + Y+
Sbjct: 640 WEDFEEDHGKGRENGYQSLHKVLEPFLLRRVKKDVEKSLPAKVEQILRVEMSALQKQYYK 699
Query: 71 GLM-EDFKKTANPEGSNRSNEISHMSMFMMLRKMANH 106
++ ++K A +G+ R + +++ M L+K NH
Sbjct: 700 WILTRNYKALA--KGT-RGSTSGFLNIVMELKKCCNH 733
>UNIPROTKB|I3LQZ8 [details] [associations]
symbol:CHD2 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005634 "nucleus" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS50013 PROSITE:PS51194
SMART:SM00298 SMART:SM00490 Pfam:PF00385 GO:GO:0005524
GO:GO:0005634 GO:GO:0003677 GO:GO:0004386 InterPro:IPR016197
SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
InterPro:IPR023780 InterPro:IPR023779 PROSITE:PS00598
InterPro:IPR025260 Pfam:PF13907 GeneTree:ENSGT00560000076896
EMBL:CT954235 EMBL:CU466964 Ensembl:ENSSSCT00000025402
Uniprot:I3LQZ8
Length = 1709
Score = 128 (50.1 bits), Expect = 2.7e-12, Sum P(2) = 2.7e-12
Identities = 27/55 (49%), Positives = 39/55 (70%)
Query: 173 LVVESGKLKKLDEILPDLKKNGHRVLIFSQFIFVLDILGHYMDIRGWRHLRLDGA 227
L+ SGKL LD++L L++ G+RVLIFSQ + +LDIL Y+ I+ + RLDG+
Sbjct: 775 LIRSSGKLILLDKLLTRLRERGNRVLIFSQMVRMLDILAEYLTIKHYPFQRLDGS 829
Score = 114 (45.2 bits), Expect = 2.7e-12, Sum P(2) = 2.7e-12
Identities = 27/97 (27%), Positives = 51/97 (52%)
Query: 11 YEDKRKEQATFEVEQVDQAKRIISPFMLRRLKKDVLTELPKKTALVIKVPMIPSQAEKYR 70
+ED ++ +++ PF+LRR+KKDV LP K +++V M Q + Y+
Sbjct: 660 WEDFEEDHGKGRENGYQSLHKVLEPFLLRRVKKDVEKSLPAKVEQILRVEMSALQKQYYK 719
Query: 71 GLM-EDFKKTANPEGSNRSNEISHMSMFMMLRKMANH 106
++ ++K A +G+ R + +++ M L+K NH
Sbjct: 720 WILTRNYKALA--KGT-RGSTSGFLNIVMELKKCCNH 753
>UNIPROTKB|G3MXX3 [details] [associations]
symbol:CHD2 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0005634 "nucleus" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS50013 PROSITE:PS51194
SMART:SM00298 SMART:SM00490 Pfam:PF00385 GO:GO:0005524
GO:GO:0005634 GO:GO:0003677 GO:GO:0004386 InterPro:IPR016197
SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
InterPro:IPR023780 InterPro:IPR023779 PROSITE:PS00598
InterPro:IPR025260 Pfam:PF13907 GeneTree:ENSGT00560000076896
OMA:AHSWCKN EMBL:DAAA02051958 Ensembl:ENSBTAT00000065179
Uniprot:G3MXX3
Length = 1810
Score = 128 (50.1 bits), Expect = 3.1e-12, Sum P(2) = 3.1e-12
Identities = 27/55 (49%), Positives = 39/55 (70%)
Query: 173 LVVESGKLKKLDEILPDLKKNGHRVLIFSQFIFVLDILGHYMDIRGWRHLRLDGA 227
L+ SGKL LD++L L++ G+RVLIFSQ + +LDIL Y+ I+ + RLDG+
Sbjct: 768 LIRSSGKLILLDKLLTRLRERGNRVLIFSQMVRMLDILAEYLTIKHYPFQRLDGS 822
Score = 114 (45.2 bits), Expect = 3.1e-12, Sum P(2) = 3.1e-12
Identities = 27/97 (27%), Positives = 51/97 (52%)
Query: 11 YEDKRKEQATFEVEQVDQAKRIISPFMLRRLKKDVLTELPKKTALVIKVPMIPSQAEKYR 70
+ED ++ +++ PF+LRR+KKDV LP K +++V M Q + Y+
Sbjct: 653 WEDFEEDHGKGRENGYQSLHKVLEPFLLRRVKKDVEKSLPAKVEQILRVEMSALQKQYYK 712
Query: 71 GLM-EDFKKTANPEGSNRSNEISHMSMFMMLRKMANH 106
++ ++K A +G+ R + +++ M L+K NH
Sbjct: 713 WILTRNYKALA--KGT-RGSTSGFLNIVMELKKCCNH 746
>UNIPROTKB|O14647 [details] [associations]
symbol:CHD2 "Chromodomain-helicase-DNA-binding protein 2"
species:9606 "Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0004003 "ATP-dependent DNA helicase activity"
evidence=TAS] [GO:0006357 "regulation of transcription from RNA
polymerase II promoter" evidence=TAS] InterPro:IPR000330
InterPro:IPR000953 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS00690 PROSITE:PS50013 PROSITE:PS51194 SMART:SM00298
SMART:SM00490 Pfam:PF00385 GO:GO:0005524 GO:GO:0005634
GO:GO:0003677 GO:GO:0006357 GO:GO:0004003 EMBL:CH471101
InterPro:IPR016197 SUPFAM:SSF54160 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 InterPro:IPR023780
InterPro:IPR023779 PROSITE:PS00598 HOVERGEN:HBG005325
InterPro:IPR025260 Pfam:PF13907 KO:K11367 HOGENOM:HOG000207917
EMBL:AF006514 EMBL:BT007050 EMBL:FJ515838 EMBL:AC013394
EMBL:BC007347 EMBL:CR978407 IPI:IPI00023109 IPI:IPI00815893
RefSeq:NP_001036037.1 RefSeq:NP_001262.3 UniGene:Hs.220864
ProteinModelPortal:O14647 SMR:O14647 IntAct:O14647 STRING:O14647
PhosphoSite:O14647 PaxDb:O14647 PRIDE:O14647 DNASU:1106
Ensembl:ENST00000394196 Ensembl:ENST00000420239
Ensembl:ENST00000557381 GeneID:1106 KEGG:hsa:1106 UCSC:uc002bso.1
UCSC:uc002bsp.3 CTD:1106 GeneCards:GC15P093533 HGNC:HGNC:1917
MIM:602119 neXtProt:NX_O14647 PharmGKB:PA26453 InParanoid:O14647
OMA:AHSWCKN OrthoDB:EOG4QRH36 ChiTaRS:CHD2 GenomeRNAi:1106
NextBio:4584 ArrayExpress:O14647 Bgee:O14647 CleanEx:HS_CHD2
Genevestigator:O14647 GermOnline:ENSG00000173575 Uniprot:O14647
Length = 1828
Score = 128 (50.1 bits), Expect = 3.1e-12, Sum P(2) = 3.1e-12
Identities = 27/55 (49%), Positives = 39/55 (70%)
Query: 173 LVVESGKLKKLDEILPDLKKNGHRVLIFSQFIFVLDILGHYMDIRGWRHLRLDGA 227
L+ SGKL LD++L L++ G+RVLIFSQ + +LDIL Y+ I+ + RLDG+
Sbjct: 786 LIRSSGKLILLDKLLTRLRERGNRVLIFSQMVRMLDILAEYLTIKHYPFQRLDGS 840
Score = 114 (45.2 bits), Expect = 3.1e-12, Sum P(2) = 3.1e-12
Identities = 27/97 (27%), Positives = 51/97 (52%)
Query: 11 YEDKRKEQATFEVEQVDQAKRIISPFMLRRLKKDVLTELPKKTALVIKVPMIPSQAEKYR 70
+ED ++ +++ PF+LRR+KKDV LP K +++V M Q + Y+
Sbjct: 671 WEDFEEDHGKGRENGYQSLHKVLEPFLLRRVKKDVEKSLPAKVEQILRVEMSALQKQYYK 730
Query: 71 GLM-EDFKKTANPEGSNRSNEISHMSMFMMLRKMANH 106
++ ++K A +G+ R + +++ M L+K NH
Sbjct: 731 WILTRNYKALA--KGT-RGSTSGFLNIVMELKKCCNH 764
>UNIPROTKB|E2R5Z7 [details] [associations]
symbol:CHD2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005634 "nucleus" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS50013 PROSITE:PS51194
SMART:SM00298 SMART:SM00490 Pfam:PF00385 GO:GO:0005524
GO:GO:0005634 GO:GO:0003677 GO:GO:0004386 InterPro:IPR016197
SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
InterPro:IPR023780 InterPro:IPR023779 PROSITE:PS00598
InterPro:IPR025260 Pfam:PF13907 GeneTree:ENSGT00560000076896
EMBL:AAEX03002279 EMBL:AAEX03002280 Ensembl:ENSCAFT00000017614
NextBio:20854276 Uniprot:E2R5Z7
Length = 1831
Score = 128 (50.1 bits), Expect = 3.1e-12, Sum P(2) = 3.1e-12
Identities = 27/55 (49%), Positives = 39/55 (70%)
Query: 173 LVVESGKLKKLDEILPDLKKNGHRVLIFSQFIFVLDILGHYMDIRGWRHLRLDGA 227
L+ SGKL LD++L L++ G+RVLIFSQ + +LDIL Y+ I+ + RLDG+
Sbjct: 789 LIRSSGKLILLDKLLTRLRERGNRVLIFSQMVRMLDILAEYLTIKHYPFQRLDGS 843
Score = 114 (45.2 bits), Expect = 3.1e-12, Sum P(2) = 3.1e-12
Identities = 27/97 (27%), Positives = 51/97 (52%)
Query: 11 YEDKRKEQATFEVEQVDQAKRIISPFMLRRLKKDVLTELPKKTALVIKVPMIPSQAEKYR 70
+ED ++ +++ PF+LRR+KKDV LP K +++V M Q + Y+
Sbjct: 674 WEDFEEDHGKGRENGYQSLHKVLEPFLLRRVKKDVEKSLPAKVEQILRVEMSALQKQYYK 733
Query: 71 GLM-EDFKKTANPEGSNRSNEISHMSMFMMLRKMANH 106
++ ++K A +G+ R + +++ M L+K NH
Sbjct: 734 WILTRNYKALA--KGT-RGSTSGFLNIVMELKKCCNH 767
>UNIPROTKB|F1SA77 [details] [associations]
symbol:CHD2 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005634 "nucleus" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS50013 PROSITE:PS51194
SMART:SM00298 SMART:SM00490 Pfam:PF00385 GO:GO:0005524
GO:GO:0005634 GO:GO:0003677 GO:GO:0004386 InterPro:IPR016197
SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
InterPro:IPR023780 InterPro:IPR023779 PROSITE:PS00598
InterPro:IPR025260 Pfam:PF13907 GeneTree:ENSGT00560000076896
OMA:AHSWCKN EMBL:CT954235 EMBL:CU466964 Ensembl:ENSSSCT00000002524
Uniprot:F1SA77
Length = 1831
Score = 128 (50.1 bits), Expect = 3.1e-12, Sum P(2) = 3.1e-12
Identities = 27/55 (49%), Positives = 39/55 (70%)
Query: 173 LVVESGKLKKLDEILPDLKKNGHRVLIFSQFIFVLDILGHYMDIRGWRHLRLDGA 227
L+ SGKL LD++L L++ G+RVLIFSQ + +LDIL Y+ I+ + RLDG+
Sbjct: 788 LIRSSGKLILLDKLLTRLRERGNRVLIFSQMVRMLDILAEYLTIKHYPFQRLDGS 842
Score = 114 (45.2 bits), Expect = 3.1e-12, Sum P(2) = 3.1e-12
Identities = 27/97 (27%), Positives = 51/97 (52%)
Query: 11 YEDKRKEQATFEVEQVDQAKRIISPFMLRRLKKDVLTELPKKTALVIKVPMIPSQAEKYR 70
+ED ++ +++ PF+LRR+KKDV LP K +++V M Q + Y+
Sbjct: 673 WEDFEEDHGKGRENGYQSLHKVLEPFLLRRVKKDVEKSLPAKVEQILRVEMSALQKQYYK 732
Query: 71 GLM-EDFKKTANPEGSNRSNEISHMSMFMMLRKMANH 106
++ ++K A +G+ R + +++ M L+K NH
Sbjct: 733 WILTRNYKALA--KGT-RGSTSGFLNIVMELKKCCNH 766
>UNIPROTKB|J9PA90 [details] [associations]
symbol:CHD2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005634 "nucleus" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS50013 PROSITE:PS51194
SMART:SM00298 SMART:SM00490 Pfam:PF00385 GO:GO:0005524
GO:GO:0005634 GO:GO:0003677 GO:GO:0004386 InterPro:IPR016197
SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
InterPro:IPR023780 InterPro:IPR023779 PROSITE:PS00598
InterPro:IPR025260 Pfam:PF13907 GeneTree:ENSGT00560000076896
OMA:AHSWCKN EMBL:AAEX03002279 EMBL:AAEX03002280
Ensembl:ENSCAFT00000045903 Uniprot:J9PA90
Length = 1840
Score = 128 (50.1 bits), Expect = 3.2e-12, Sum P(2) = 3.2e-12
Identities = 27/55 (49%), Positives = 39/55 (70%)
Query: 173 LVVESGKLKKLDEILPDLKKNGHRVLIFSQFIFVLDILGHYMDIRGWRHLRLDGA 227
L+ SGKL LD++L L++ G+RVLIFSQ + +LDIL Y+ I+ + RLDG+
Sbjct: 799 LIRSSGKLILLDKLLTRLRERGNRVLIFSQMVRMLDILAEYLTIKHYPFQRLDGS 853
Score = 114 (45.2 bits), Expect = 3.2e-12, Sum P(2) = 3.2e-12
Identities = 27/97 (27%), Positives = 51/97 (52%)
Query: 11 YEDKRKEQATFEVEQVDQAKRIISPFMLRRLKKDVLTELPKKTALVIKVPMIPSQAEKYR 70
+ED ++ +++ PF+LRR+KKDV LP K +++V M Q + Y+
Sbjct: 684 WEDFEEDHGKGRENGYQSLHKVLEPFLLRRVKKDVEKSLPAKVEQILRVEMSALQKQYYK 743
Query: 71 GLM-EDFKKTANPEGSNRSNEISHMSMFMMLRKMANH 106
++ ++K A +G+ R + +++ M L+K NH
Sbjct: 744 WILTRNYKALA--KGT-RGSTSGFLNIVMELKKCCNH 777
>ZFIN|ZDB-GENE-050419-256 [details] [associations]
symbol:chd2 "chromodomain helicase DNA binding
protein 2" species:7955 "Danio rerio" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS50013 PROSITE:PS51194
SMART:SM00298 SMART:SM00490 Pfam:PF00385 ZFIN:ZDB-GENE-050419-256
GO:GO:0005524 GO:GO:0005634 GO:GO:0003677 GO:GO:0004386
InterPro:IPR016197 SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 InterPro:IPR023780 InterPro:IPR023779
PROSITE:PS00598 InterPro:IPR025260 Pfam:PF13907
GeneTree:ENSGT00560000076896 EMBL:BX649578 IPI:IPI00999128
Ensembl:ENSDART00000127730 ArrayExpress:E7F7R2 Bgee:E7F7R2
Uniprot:E7F7R2
Length = 1813
Score = 125 (49.1 bits), Expect = 3.5e-12, Sum P(2) = 3.5e-12
Identities = 27/55 (49%), Positives = 38/55 (69%)
Query: 173 LVVESGKLKKLDEILPDLKKNGHRVLIFSQFIFVLDILGHYMDIRGWRHLRLDGA 227
LV GKL LD++L LK G+RVLIFSQ + +LDIL Y+ ++ ++ RLDG+
Sbjct: 791 LVRGGGKLVLLDKLLTRLKDRGNRVLIFSQMVRMLDILADYLSMKRYQFQRLDGS 845
Score = 117 (46.2 bits), Expect = 3.5e-12, Sum P(2) = 3.5e-12
Identities = 29/97 (29%), Positives = 50/97 (51%)
Query: 11 YEDKRKEQATFEVEQVDQAKRIISPFMLRRLKKDVLTELPKKTALVIKVPMIPSQAEKYR 70
+ED E +++ PF+LRR+KKDV LP K +++V M Q + Y+
Sbjct: 676 WEDFEDEHGKGRDNGYQSLHKVLEPFLLRRVKKDVEKSLPAKVEQILRVDMSAQQKQFYK 735
Query: 71 GLM-EDFKKTANPEGSNRSNEISHMSMFMMLRKMANH 106
++ +FK A +G+ R + +++ M L+K NH
Sbjct: 736 WILTRNFK--ALSKGT-RGSSSGFLNIVMELKKCCNH 769
Score = 41 (19.5 bits), Expect = 0.00023, Sum P(2) = 0.00023
Identities = 11/30 (36%), Positives = 17/30 (56%)
Query: 2 DSDSEDDARYEDKRKEQATFEVEQVDQAKR 31
D DS D+ ED +E ++ E EQ ++ R
Sbjct: 154 DDDSNDE---EDVEEETSSSESEQEEKKVR 180
Score = 36 (17.7 bits), Expect = 0.00074, Sum P(2) = 0.00074
Identities = 8/22 (36%), Positives = 13/22 (59%)
Query: 72 LMEDFKKTANPEGSNRSNEISH 93
+M++ K EGS +SN S+
Sbjct: 1 MMKNKSKKQEDEGSTQSNASSN 22
Score = 36 (17.7 bits), Expect = 0.00074, Sum P(2) = 0.00074
Identities = 9/27 (33%), Positives = 12/27 (44%)
Query: 2 DSDSEDDARYEDKRKEQATFEVEQVDQ 28
D D E+D R+ AT + DQ
Sbjct: 218 DDDDEEDTPKRQTRRRAATKVSYKEDQ 244
>GENEDB_PFALCIPARUM|PF08_0048 [details] [associations]
symbol:PF08_0048 "ATP-dependent helicase,
putative" species:5833 "Plasmodium falciparum" [GO:0008026
"ATP-dependent helicase activity" evidence=ISS] InterPro:IPR000330
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0005634 GO:GO:0005737
GO:GO:0016020 GO:GO:0006355 GO:GO:0003677 GO:GO:0006351
GO:GO:0016568 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 InterPro:IPR014012 InterPro:IPR006562 Pfam:PF07529
PROSITE:PS51204 GO:GO:0008026 KO:K01509 EMBL:AL844507
RefSeq:XP_002808863.1 EnsemblProtists:PF08_0048:mRNA GeneID:2655499
KEGG:pfa:PF08_0048 EuPathDB:PlasmoDB:PF3D7_0820000 Uniprot:C0H4W3
Length = 2082
Score = 124 (48.7 bits), Expect = 3.9e-12, Sum P(2) = 3.9e-12
Identities = 25/62 (40%), Positives = 43/62 (69%)
Query: 172 DLVVESGKLKKLDEILPDLKKNGHRVLIFSQFIFVLDILGHYMDIRGWRHLRLDGATQVS 231
D+ + SGKL L+++L K+ G++ L+F+QFI +LDIL +++ + +RLDG+T+V
Sbjct: 1762 DISLGSGKLCALEKLLSKCKREGNKCLLFTQFIKMLDILEIFLNHLNYSFIRLDGSTKVE 1821
Query: 232 SR 233
R
Sbjct: 1822 QR 1823
Score = 119 (46.9 bits), Expect = 3.9e-12, Sum P(2) = 3.9e-12
Identities = 29/84 (34%), Positives = 46/84 (54%)
Query: 24 EQVDQAKRIISPFMLRRLKKDVLTELPKKTALVIKVPMIPSQAEKYRGLMEDFKKTANPE 83
E +D+ +I P++LRRLKK+V E+P K +IK + Q Y ++F N +
Sbjct: 869 ELIDRLHTVIRPYILRRLKKNVEKEMPNKYEHIIKCKLTRRQQILY----DEFINNKNVQ 924
Query: 84 GS-NRSNEISHMSMFMMLRKMANH 106
+ N N I M++ + LRK+ NH
Sbjct: 925 NTLNTGNYIGLMNILIQLRKVCNH 948
>UNIPROTKB|C0H4W3 [details] [associations]
symbol:PF08_0048 "Probable ATP-dependent helicase
PF08_0048" species:36329 "Plasmodium falciparum 3D7" [GO:0003674
"molecular_function" evidence=ND] [GO:0005575 "cellular_component"
evidence=ND] [GO:0005737 "cytoplasm" evidence=NAS] [GO:0008026
"ATP-dependent helicase activity" evidence=ISS] [GO:0016020
"membrane" evidence=NAS] InterPro:IPR000330 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0005634 GO:GO:0005737 GO:GO:0016020
GO:GO:0006355 GO:GO:0003677 GO:GO:0006351 GO:GO:0016568
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
InterPro:IPR014012 InterPro:IPR006562 Pfam:PF07529 PROSITE:PS51204
GO:GO:0008026 KO:K01509 EMBL:AL844507 RefSeq:XP_002808863.1
EnsemblProtists:PF08_0048:mRNA GeneID:2655499 KEGG:pfa:PF08_0048
EuPathDB:PlasmoDB:PF3D7_0820000 Uniprot:C0H4W3
Length = 2082
Score = 124 (48.7 bits), Expect = 3.9e-12, Sum P(2) = 3.9e-12
Identities = 25/62 (40%), Positives = 43/62 (69%)
Query: 172 DLVVESGKLKKLDEILPDLKKNGHRVLIFSQFIFVLDILGHYMDIRGWRHLRLDGATQVS 231
D+ + SGKL L+++L K+ G++ L+F+QFI +LDIL +++ + +RLDG+T+V
Sbjct: 1762 DISLGSGKLCALEKLLSKCKREGNKCLLFTQFIKMLDILEIFLNHLNYSFIRLDGSTKVE 1821
Query: 232 SR 233
R
Sbjct: 1822 QR 1823
Score = 119 (46.9 bits), Expect = 3.9e-12, Sum P(2) = 3.9e-12
Identities = 29/84 (34%), Positives = 46/84 (54%)
Query: 24 EQVDQAKRIISPFMLRRLKKDVLTELPKKTALVIKVPMIPSQAEKYRGLMEDFKKTANPE 83
E +D+ +I P++LRRLKK+V E+P K +IK + Q Y ++F N +
Sbjct: 869 ELIDRLHTVIRPYILRRLKKNVEKEMPNKYEHIIKCKLTRRQQILY----DEFINNKNVQ 924
Query: 84 GS-NRSNEISHMSMFMMLRKMANH 106
+ N N I M++ + LRK+ NH
Sbjct: 925 NTLNTGNYIGLMNILIQLRKVCNH 948
>DICTYBASE|DDB_G0293012 [details] [associations]
symbol:DDB_G0293012 "CHR group protein" species:44689
"Dictyostelium discoideum" [GO:0005634 "nucleus" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0006357
"regulation of transcription from RNA polymerase II promoter"
evidence=ISS] [GO:0004003 "ATP-dependent DNA helicase activity"
evidence=ISS] InterPro:IPR000330 InterPro:IPR000626
InterPro:IPR000953 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS50013 PROSITE:PS51194 SMART:SM00213 SMART:SM00298
SMART:SM00490 dictyBase:DDB_G0293012 Pfam:PF00385 GO:GO:0005524
GO:GO:0005634 GO:GO:0003677 GO:GO:0006357 GO:GO:0004003
InterPro:IPR016197 SUPFAM:SSF54160 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 InterPro:IPR023780
EMBL:AAFI02000199 InterPro:IPR022617 Pfam:PF11976
RefSeq:XP_629261.1 ProteinModelPortal:Q54CF8
EnsemblProtists:DDB0220643 GeneID:8628981 KEGG:ddi:DDB_G0293012
InParanoid:Q54CF8 OMA:IMINEDI Uniprot:Q54CF8
Length = 3071
Score = 129 (50.5 bits), Expect = 4.3e-12, Sum P(3) = 4.3e-12
Identities = 28/87 (32%), Positives = 51/87 (58%)
Query: 22 EVEQVDQAKRIISPFMLRRLKKDVLTELPKKTALVIKVPMIPSQAEKYRGLMEDFKKTAN 81
E QV + +++SP++LRR+K+DV +P K VI+V + +Q YR ++E ++ +
Sbjct: 1094 EESQVSKLHQLLSPYLLRRMKEDVELSIPIKEETVIQVELSSTQKTYYRAILERNREFLS 1153
Query: 82 PEGSNRSNEISHMSMFMM-LRKMANHP 107
G + + +S M+ +RK+ NHP
Sbjct: 1154 -RGIKQKTNLPKLSNIMIQIRKVCNHP 1179
Score = 118 (46.6 bits), Expect = 4.3e-12, Sum P(3) = 4.3e-12
Identities = 27/61 (44%), Positives = 38/61 (62%)
Query: 173 LVVESGKLKKLDEILPDLKKNGHRVLIFSQFIFVLDILGHYMDIRGWRHLRLDGATQVSS 232
LV S KL +D++L LK GH+VLIFSQ + L+IL Y+ R + + RLDG+ +
Sbjct: 1205 LVKSSSKLVLVDKLLQRLKAEGHQVLIFSQMVESLNILEDYLQYREYTYERLDGSIKSEV 1264
Query: 233 R 233
R
Sbjct: 1265 R 1265
Score = 40 (19.1 bits), Expect = 4.3e-12, Sum P(3) = 4.3e-12
Identities = 7/26 (26%), Positives = 16/26 (61%)
Query: 2 DSDSEDDARYEDKRKEQATFEVEQVD 27
+ ++E+D E++ +E+ E E+ D
Sbjct: 206 EGENEEDEEEEEEEEEEEEEEEEEED 231
>UNIPROTKB|E2RKP4 [details] [associations]
symbol:SMARCA2 "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0071778 "WINAC complex" evidence=IEA]
[GO:0071565 "nBAF complex" evidence=IEA] [GO:0071564 "npBAF
complex" evidence=IEA] [GO:0045892 "negative regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0045111
"intermediate filament cytoskeleton" evidence=IEA] [GO:0044212
"transcription regulatory region DNA binding" evidence=IEA]
[GO:0035887 "aortic smooth muscle cell differentiation"
evidence=IEA] [GO:0030308 "negative regulation of cell growth"
evidence=IEA] [GO:0016514 "SWI/SNF complex" evidence=IEA]
[GO:0008285 "negative regulation of cell proliferation"
evidence=IEA] [GO:0001105 "RNA polymerase II transcription
coactivator activity" evidence=IEA] [GO:0000790 "nuclear chromatin"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] InterPro:IPR000330
InterPro:IPR001487 InterPro:IPR001650 InterPro:IPR006576
InterPro:IPR014978 Pfam:PF00176 Pfam:PF00271 Pfam:PF00439
Pfam:PF07533 Pfam:PF08880 PRINTS:PR00503 PROSITE:PS50014
PROSITE:PS51194 SMART:SM00297 SMART:SM00490 SMART:SM00592
SMART:SM00951 GO:GO:0005524 GO:GO:0045892 GO:GO:0008285
GO:GO:0030308 GO:GO:0045944 GO:GO:0044212 GO:GO:0045111
GO:GO:0000790 GO:GO:0071564 GO:GO:0016514 GO:GO:0071565
GO:GO:0004386 GO:GO:0001105 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 Gene3D:1.20.920.10 SUPFAM:SSF47370 PROSITE:PS00633
InterPro:IPR018359 GO:GO:0071778 GeneTree:ENSGT00550000074659
InterPro:IPR013999 InterPro:IPR014012 InterPro:IPR006562
Pfam:PF07529 SMART:SM00573 PROSITE:PS51204 GO:GO:0035887
EMBL:AAEX03000600 Ensembl:ENSCAFT00000003206 NextBio:20852013
Uniprot:E2RKP4
Length = 1556
Score = 124 (48.7 bits), Expect = 4.5e-12, Sum P(3) = 4.5e-12
Identities = 26/62 (41%), Positives = 36/62 (58%)
Query: 172 DLVVESGKLKKLDEILPDLKKNGHRVLIFSQFIFVLDILGHYMDIRGWRHLRLDGATQVS 231
+L SGK + LD ILP L+ HRVL+F Q ++ I+ Y R + +LRLDG T+
Sbjct: 1028 ELYRASGKFELLDRILPKLRATNHRVLLFCQMTSLMTIMEDYFAFRNFLYLRLDGTTKSE 1087
Query: 232 SR 233
R
Sbjct: 1088 DR 1089
Score = 118 (46.6 bits), Expect = 4.5e-12, Sum P(3) = 4.5e-12
Identities = 33/90 (36%), Positives = 48/90 (53%)
Query: 31 RIISPFMLRRLKKDVLTELPKKTALVIKVPMIPSQAEKYRGLMEDFKKTANPEGSNRSNE 90
+++ PF+LRRLKK+V ++LP+K VIK M Q YR + K +GS + +
Sbjct: 924 KVLRPFLLRRLKKEVESQLPEKVEYVIKCDMSALQKILYRHMQA--KGILLTDGSEKDKK 981
Query: 91 -----ISHMSMFMMLRKMANHPLGLRYYFQ 115
+ M+ M LRK+ NHP Y FQ
Sbjct: 982 GKGGAKTLMNTIMQLRKICNHP----YMFQ 1007
Score = 43 (20.2 bits), Expect = 0.00083, Sum P(3) = 0.00083
Identities = 10/24 (41%), Positives = 16/24 (66%)
Query: 156 SLKHKTLDCAKYKVP-DDLVVESG 178
S++ K L AKYK+ D V+++G
Sbjct: 1163 SVEEKILAAAKYKLNVDQKVIQAG 1186
Score = 37 (18.1 bits), Expect = 4.5e-12, Sum P(3) = 4.5e-12
Identities = 10/26 (38%), Positives = 17/26 (65%)
Query: 3 SDSED-DARYE--DKRKEQATFEVEQ 25
SDSE+ D+ YE D+ +E + + E+
Sbjct: 617 SDSEESDSDYEEEDEEEESSRQDTEE 642
>UNIPROTKB|J9P5P2 [details] [associations]
symbol:SMARCA2 "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001487 InterPro:IPR001650
InterPro:IPR006576 InterPro:IPR014978 Pfam:PF00176 Pfam:PF00271
Pfam:PF00439 Pfam:PF07533 Pfam:PF08880 PRINTS:PR00503
PROSITE:PS50014 PROSITE:PS51194 SMART:SM00297 SMART:SM00490
SMART:SM00592 SMART:SM00951 GO:GO:0005524 GO:GO:0005634
GO:GO:0006355 GO:GO:0003677 GO:GO:0004386 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 Gene3D:1.20.920.10 SUPFAM:SSF47370
PROSITE:PS00633 InterPro:IPR018359 KO:K11647
GeneTree:ENSGT00550000074659 InterPro:IPR013999 InterPro:IPR014012
InterPro:IPR006562 Pfam:PF07529 SMART:SM00573 PROSITE:PS51204
CTD:6595 OMA:PQEGMHQ EMBL:AAEX03000600 RefSeq:XP_850159.1
Ensembl:ENSCAFT00000046362 GeneID:476335 KEGG:cfa:476335
Uniprot:J9P5P2
Length = 1574
Score = 124 (48.7 bits), Expect = 4.7e-12, Sum P(3) = 4.7e-12
Identities = 26/62 (41%), Positives = 36/62 (58%)
Query: 172 DLVVESGKLKKLDEILPDLKKNGHRVLIFSQFIFVLDILGHYMDIRGWRHLRLDGATQVS 231
+L SGK + LD ILP L+ HRVL+F Q ++ I+ Y R + +LRLDG T+
Sbjct: 1028 ELYRASGKFELLDRILPKLRATNHRVLLFCQMTSLMTIMEDYFAFRNFLYLRLDGTTKSE 1087
Query: 232 SR 233
R
Sbjct: 1088 DR 1089
Score = 118 (46.6 bits), Expect = 4.7e-12, Sum P(3) = 4.7e-12
Identities = 33/90 (36%), Positives = 48/90 (53%)
Query: 31 RIISPFMLRRLKKDVLTELPKKTALVIKVPMIPSQAEKYRGLMEDFKKTANPEGSNRSNE 90
+++ PF+LRRLKK+V ++LP+K VIK M Q YR + K +GS + +
Sbjct: 924 KVLRPFLLRRLKKEVESQLPEKVEYVIKCDMSALQKILYRHMQA--KGILLTDGSEKDKK 981
Query: 91 -----ISHMSMFMMLRKMANHPLGLRYYFQ 115
+ M+ M LRK+ NHP Y FQ
Sbjct: 982 GKGGAKTLMNTIMQLRKICNHP----YMFQ 1007
Score = 43 (20.2 bits), Expect = 0.00086, Sum P(3) = 0.00086
Identities = 10/24 (41%), Positives = 16/24 (66%)
Query: 156 SLKHKTLDCAKYKVP-DDLVVESG 178
S++ K L AKYK+ D V+++G
Sbjct: 1163 SVEEKILAAAKYKLNVDQKVIQAG 1186
Score = 37 (18.1 bits), Expect = 4.7e-12, Sum P(3) = 4.7e-12
Identities = 10/26 (38%), Positives = 17/26 (65%)
Query: 3 SDSED-DARYE--DKRKEQATFEVEQ 25
SDSE+ D+ YE D+ +E + + E+
Sbjct: 617 SDSEESDSDYEEEDEEEESSRQDTEE 642
>ZFIN|ZDB-GENE-070912-179 [details] [associations]
symbol:chd7 "chromodomain helicase DNA binding
protein 7" species:7955 "Danio rerio" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0016817 "hydrolase
activity, acting on acid anhydrides" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0007368 "determination of left/right symmetry"
evidence=IMP] [GO:0001756 "somitogenesis" evidence=IMP] [GO:0060041
"retina development in camera-type eye" evidence=IMP] [GO:0021602
"cranial nerve morphogenesis" evidence=IMP] [GO:0001947 "heart
looping" evidence=IMP] [GO:0030282 "bone mineralization"
evidence=IMP] [GO:0042472 "inner ear morphogenesis" evidence=IMP]
[GO:0014029 "neural crest formation" evidence=IMP]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001650
InterPro:IPR006576 Pfam:PF00176 Pfam:PF00271 Pfam:PF07533
PROSITE:PS50013 PROSITE:PS51194 SMART:SM00298 SMART:SM00490
SMART:SM00592 Pfam:PF00385 ZFIN:ZDB-GENE-070912-179 GO:GO:0005524
GO:GO:0005634 GO:GO:0003677 GO:GO:0001756 GO:GO:0042472
GO:GO:0060041 GO:GO:0004386 GO:GO:0001947 GO:GO:0030282
InterPro:IPR016197 SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 InterPro:IPR023780 GeneTree:ENSGT00560000077077
GO:GO:0021602 EMBL:CR450710 GO:GO:0014029 IPI:IPI00493585
Ensembl:ENSDART00000016208 Ensembl:ENSDART00000135230
Uniprot:F1QGL1
Length = 3140
Score = 128 (50.1 bits), Expect = 6.2e-12, Sum P(3) = 6.2e-12
Identities = 27/61 (44%), Positives = 40/61 (65%)
Query: 173 LVVESGKLKKLDEILPDLKKNGHRVLIFSQFIFVLDILGHYMDIRGWRHLRLDGATQVSS 232
++ +GKL +D++LP LK GHRVLIFSQ + LDIL Y+ R + + R+DG + +
Sbjct: 1337 MIQAAGKLVLIDKLLPKLKAGGHRVLIFSQMVRCLDILEDYLIQRRYPYERIDGRVRGNL 1396
Query: 233 R 233
R
Sbjct: 1397 R 1397
Score = 119 (46.9 bits), Expect = 6.2e-12, Sum P(3) = 6.2e-12
Identities = 34/91 (37%), Positives = 48/91 (52%)
Query: 24 EQVDQAKRIISPFMLRRLKKDVLTELPKKTALVIKVPMIPSQAEKYRGLME-DF----KK 78
EQV + + I+ P MLRRLK+DV L K +I+V + Q + YR ++E +F K
Sbjct: 1217 EQVQKLQGILKPMMLRRLKEDVEKNLAPKEETIIEVELTNVQKKYYRAILEKNFAFLSKS 1276
Query: 79 TAN--PEGSNRSNEISHMSMFMMLRKMANHP 107
A G SN + ++ M LRK NHP
Sbjct: 1277 GAGGGSGGGGGSNVPNLLNTMMELRKCCNHP 1307
Score = 39 (18.8 bits), Expect = 6.2e-12, Sum P(3) = 6.2e-12
Identities = 10/26 (38%), Positives = 16/26 (61%)
Query: 2 DSDSEDDARYEDKRKEQ--ATFEVEQ 25
DS+S + + E KRK + T +VE+
Sbjct: 754 DSESGNSTKKEAKRKREPSVTSDVEK 779
Score = 39 (18.8 bits), Expect = 0.00061, Sum P(3) = 0.00061
Identities = 8/18 (44%), Positives = 11/18 (61%)
Query: 132 YKGTNP--QYILEDISWL 147
YK N +Y LE ++WL
Sbjct: 1006 YKNANALREYQLEGVNWL 1023
>FB|FBgn0011604 [details] [associations]
symbol:Iswi "Imitation SWI" species:7227 "Drosophila
melanogaster" [GO:0006338 "chromatin remodeling"
evidence=ISS;NAS;TAS] [GO:0016589 "NURF complex"
evidence=NAS;IDA;TAS] [GO:0005524 "ATP binding" evidence=ISS]
[GO:0005634 "nucleus" evidence=IDA] [GO:0008094 "DNA-dependent
ATPase activity" evidence=IGI;IDA] [GO:0000166 "nucleotide binding"
evidence=TAS] [GO:0016584 "nucleosome positioning" evidence=IDA]
[GO:0006334 "nucleosome assembly" evidence=IDA] [GO:0016590 "ACF
complex" evidence=NAS;IDA;TAS] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IMP;IDA] [GO:0008623 "CHRAC"
evidence=NAS;IDA;TAS] [GO:0006333 "chromatin assembly or
disassembly" evidence=IDA;TAS] [GO:0042766 "nucleosome
mobilization" evidence=IDA;TAS] [GO:0016887 "ATPase activity"
evidence=NAS] [GO:0035060 "brahma complex" evidence=IDA]
[GO:0003678 "DNA helicase activity" evidence=TAS] [GO:0005515
"protein binding" evidence=IPI] [GO:0006351 "transcription,
DNA-dependent" evidence=IDA] [GO:0005667 "transcription factor
complex" evidence=IPI] [GO:0045893 "positive regulation of
transcription, DNA-dependent" evidence=TAS] [GO:0043044
"ATP-dependent chromatin remodeling" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0031491 "nucleosome binding" evidence=IEA]
[GO:0008134 "transcription factor binding" evidence=IPI]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=IMP] [GO:0035076 "ecdysone
receptor-mediated signaling pathway" evidence=IGI] [GO:0007517
"muscle organ development" evidence=IMP] [GO:0048813 "dendrite
morphogenesis" evidence=IMP] [GO:0042752 "regulation of circadian
rhythm" evidence=IMP] [GO:0006325 "chromatin organization"
evidence=IMP] [GO:0045892 "negative regulation of transcription,
DNA-dependent" evidence=IMP] [GO:0031213 "RSF complex"
evidence=IPI] [GO:0005700 "polytene chromosome" evidence=IDA]
[GO:0070615 "nucleosome-dependent ATPase activity" evidence=IDA]
[GO:0035063 "nuclear speck organization" evidence=IMP]
InterPro:IPR000330 InterPro:IPR001005 InterPro:IPR001650
InterPro:IPR009057 InterPro:IPR015194 InterPro:IPR015195
InterPro:IPR020838 Pfam:PF00176 Pfam:PF00271 Pfam:PF09110
Pfam:PF09111 Pfam:PF13892 PROSITE:PS00690 PROSITE:PS51194
SMART:SM00490 SMART:SM00717 EMBL:AE013599 GO:GO:0005524
GO:GO:0045892 GO:GO:0003677 GO:GO:0045944 GO:GO:0006351
GO:GO:0042752 Gene3D:1.10.10.60 SUPFAM:SSF46689 GO:GO:0005667
GO:GO:0048813 GO:GO:0007517 InterPro:IPR017884 PROSITE:PS51293
GO:GO:0005700 GO:GO:0035076 GO:GO:0042766 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0003678
GO:GO:0031491 GO:GO:0043044 GO:GO:0016584 GO:GO:0006334
GO:GO:0016589 GO:GO:0016590 GO:GO:0008623 GO:GO:0008094
ChiTaRS:SMARCA1 GeneTree:ENSGT00680000100002 KO:K11654
SUPFAM:SSF101224 EMBL:L27127 EMBL:AY094908 EMBL:BT044562 PIR:A56533
RefSeq:NP_523719.1 RefSeq:NP_725203.1 RefSeq:NP_725204.1
UniGene:Dm.2581 PDB:1OFC PDBsum:1OFC ProteinModelPortal:Q24368
SMR:Q24368 DIP:DIP-24067N IntAct:Q24368 MINT:MINT-252539
STRING:Q24368 PaxDb:Q24368 PRIDE:Q24368 EnsemblMetazoa:FBtr0087841
EnsemblMetazoa:FBtr0087842 EnsemblMetazoa:FBtr0087843 GeneID:36390
KEGG:dme:Dmel_CG8625 CTD:36390 FlyBase:FBgn0011604
InParanoid:Q24368 OMA:EDYCHWR OrthoDB:EOG4M0CGK PhylomeDB:Q24368
EvolutionaryTrace:Q24368 GenomeRNAi:36390 NextBio:798287
Bgee:Q24368 GermOnline:CG8625 GO:GO:0031213 GO:GO:0070615
GO:GO:0035063 Uniprot:Q24368
Length = 1027
Score = 137 (53.3 bits), Expect = 7.4e-12, Sum P(2) = 7.4e-12
Identities = 31/67 (46%), Positives = 39/67 (58%)
Query: 167 YKVPDDLVVESGKLKKLDEILPDLKKNGHRVLIFSQFIFVLDILGHYMDIRGWRHLRLDG 226
Y LV SGK+ LD++LP L++ G RVLIFSQ +LDIL Y R + + RLDG
Sbjct: 420 YTTDTHLVYNSGKMAILDKLLPKLQEQGSRVLIFSQMTRMLDILEDYCHWRNYNYCRLDG 479
Query: 227 ATQVSSR 233
T R
Sbjct: 480 QTPHEDR 486
Score = 94 (38.1 bits), Expect = 7.4e-12, Sum P(2) = 7.4e-12
Identities = 25/77 (32%), Positives = 41/77 (53%)
Query: 32 IISPFMLRRLKKDVLTELPKKTALVIKVPMIPSQAEKY-RGLMEDFKKTANPEGSNRSNE 90
++ PF+LRRLK +V L K + I V + Q + Y + L++D N G+ + +
Sbjct: 335 VLKPFLLRRLKAEVEKRLKPKKEMKIFVGLSKMQRDWYTKVLLKDID-VVN--GAGKVEK 391
Query: 91 ISHMSMFMMLRKMANHP 107
+ ++ M LRK NHP
Sbjct: 392 MRLQNILMQLRKCTNHP 408
>UNIPROTKB|F1PTH3 [details] [associations]
symbol:CHD6 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005634 "nucleus" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0003682 "chromatin binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001005
InterPro:IPR001650 InterPro:IPR002464 InterPro:IPR006576
Pfam:PF00176 Pfam:PF00271 Pfam:PF07533 PROSITE:PS00690
PROSITE:PS50013 PROSITE:PS51194 SMART:SM00298 SMART:SM00490
SMART:SM00717 Pfam:PF00385 GO:GO:0005524 GO:GO:0005634
GO:GO:0003677 GO:GO:0003682 InterPro:IPR016197 SUPFAM:SSF54160
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR023780 OMA:CKWATME GeneTree:ENSGT00560000077077
EMBL:AAEX03013942 EMBL:AAEX03013943 Ensembl:ENSCAFT00000014716
Uniprot:F1PTH3
Length = 2715
Score = 129 (50.5 bits), Expect = 7.6e-12, Sum P(3) = 7.6e-12
Identities = 32/85 (37%), Positives = 48/85 (56%)
Query: 24 EQVDQAKRIISPFMLRRLKKDVLTELPKKTALVIKVPMIPSQAEKYRGLME-DFKKTANP 82
EQV + + I+ P MLRRLK DV L K +I+V + Q + YR ++E +F
Sbjct: 666 EQVKKLQSILKPMMLRRLKDDVEKNLAPKQETIIEVELTNIQKKYYRAILEKNFSFLT-- 723
Query: 83 EGSNRSNEISHMSMFMMLRKMANHP 107
+G+N+ N + ++ M LRK NHP
Sbjct: 724 KGANQHNMPNLINTMMELRKCCNHP 748
Score = 118 (46.6 bits), Expect = 7.6e-12, Sum P(3) = 7.6e-12
Identities = 25/61 (40%), Positives = 39/61 (63%)
Query: 173 LVVESGKLKKLDEILPDLKKNGHRVLIFSQFIFVLDILGHYMDIRGWRHLRLDGATQVSS 232
++ +GKL +D++LP L GH+VLIFSQ + LDIL Y+ R + + R+DG + +
Sbjct: 778 MIQAAGKLVLIDKLLPKLIAGGHKVLIFSQMVRCLDILEDYLIQRRYTYERIDGRVRGNL 837
Query: 233 R 233
R
Sbjct: 838 R 838
Score = 36 (17.7 bits), Expect = 7.6e-12, Sum P(3) = 7.6e-12
Identities = 7/21 (33%), Positives = 13/21 (61%)
Query: 8 DARYEDKRKEQATFEVEQVDQ 28
+ + + KRK + T E ++DQ
Sbjct: 194 ERKKKGKRKSETTVESLELDQ 214
>UNIPROTKB|J9P0F6 [details] [associations]
symbol:CHD6 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005634 "nucleus" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0003682 "chromatin binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001005
InterPro:IPR001650 InterPro:IPR002464 InterPro:IPR006576
Pfam:PF00176 Pfam:PF00271 Pfam:PF07533 PROSITE:PS00690
PROSITE:PS50013 PROSITE:PS51194 SMART:SM00298 SMART:SM00490
SMART:SM00717 Pfam:PF00385 GO:GO:0005524 GO:GO:0005634
GO:GO:0003677 GO:GO:0003682 InterPro:IPR016197 SUPFAM:SSF54160
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR023780 CTD:84181 KO:K14436 GeneTree:ENSGT00560000077077
EMBL:AAEX03013942 EMBL:AAEX03013943 RefSeq:XP_534421.3
Ensembl:ENSCAFT00000048852 GeneID:477230 KEGG:cfa:477230
Uniprot:J9P0F6
Length = 2715
Score = 129 (50.5 bits), Expect = 7.6e-12, Sum P(3) = 7.6e-12
Identities = 32/85 (37%), Positives = 48/85 (56%)
Query: 24 EQVDQAKRIISPFMLRRLKKDVLTELPKKTALVIKVPMIPSQAEKYRGLME-DFKKTANP 82
EQV + + I+ P MLRRLK DV L K +I+V + Q + YR ++E +F
Sbjct: 666 EQVKKLQSILKPMMLRRLKDDVEKNLAPKQETIIEVELTNIQKKYYRAILEKNFSFLT-- 723
Query: 83 EGSNRSNEISHMSMFMMLRKMANHP 107
+G+N+ N + ++ M LRK NHP
Sbjct: 724 KGANQHNMPNLINTMMELRKCCNHP 748
Score = 118 (46.6 bits), Expect = 7.6e-12, Sum P(3) = 7.6e-12
Identities = 25/61 (40%), Positives = 39/61 (63%)
Query: 173 LVVESGKLKKLDEILPDLKKNGHRVLIFSQFIFVLDILGHYMDIRGWRHLRLDGATQVSS 232
++ +GKL +D++LP L GH+VLIFSQ + LDIL Y+ R + + R+DG + +
Sbjct: 778 MIQAAGKLVLIDKLLPKLIAGGHKVLIFSQMVRCLDILEDYLIQRRYTYERIDGRVRGNL 837
Query: 233 R 233
R
Sbjct: 838 R 838
Score = 36 (17.7 bits), Expect = 7.6e-12, Sum P(3) = 7.6e-12
Identities = 7/21 (33%), Positives = 13/21 (61%)
Query: 8 DARYEDKRKEQATFEVEQVDQ 28
+ + + KRK + T E ++DQ
Sbjct: 194 ERKKKGKRKSETTVESLELDQ 214
>UNIPROTKB|Q8TD26 [details] [associations]
symbol:CHD6 "Chromodomain-helicase-DNA-binding protein 6"
species:9606 "Homo sapiens" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0005634 "nucleus" evidence=NAS]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=NAS] [GO:0006338 "chromatin remodeling" evidence=NAS]
[GO:0007399 "nervous system development" evidence=NAS] [GO:0003682
"chromatin binding" evidence=NAS] InterPro:IPR000330
InterPro:IPR000953 InterPro:IPR001005 InterPro:IPR001650
InterPro:IPR002464 InterPro:IPR006576 Pfam:PF00176 Pfam:PF00271
Pfam:PF07533 PROSITE:PS00690 PROSITE:PS50013 PROSITE:PS51194
SMART:SM00298 SMART:SM00490 SMART:SM00717 Pfam:PF00385
GO:GO:0005524 GO:GO:0005634 GO:GO:0007399 GO:GO:0006355
GO:GO:0003677 GO:GO:0006351 GO:GO:0003682 GO:GO:0006338
InterPro:IPR016197 SUPFAM:SSF54160 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR023780 PROSITE:PS00598 CleanEx:HS_CHD5 EMBL:AY034072
EMBL:AL121674 EMBL:AL031669 EMBL:AL031667 EMBL:BC021907
EMBL:BC039860 EMBL:BC040016 EMBL:AF525085 EMBL:AB037756
EMBL:AK026022 IPI:IPI00220289 IPI:IPI00395823 IPI:IPI00513717
RefSeq:NP_115597.3 UniGene:Hs.740645 UniGene:Hs.741381 PDB:2EPB
PDBsum:2EPB ProteinModelPortal:Q8TD26 SMR:Q8TD26 IntAct:Q8TD26
MINT:MINT-1197235 STRING:Q8TD26 PhosphoSite:Q8TD26 DMDM:296439466
PaxDb:Q8TD26 PRIDE:Q8TD26 Ensembl:ENST00000373222
Ensembl:ENST00000373233 Ensembl:ENST00000440647 GeneID:84181
KEGG:hsa:84181 UCSC:uc002xka.1 UCSC:uc002xkc.3 CTD:84181
GeneCards:GC20M040030 H-InvDB:HIX0015824 H-InvDB:HIX0027712
HGNC:HGNC:19057 neXtProt:NX_Q8TD26 PharmGKB:PA134974700
HOVERGEN:HBG081150 InParanoid:Q8TD26 KO:K14436 OMA:CKWATME
OrthoDB:EOG4NP72J PhylomeDB:Q8TD26 ChiTaRS:CHD6
EvolutionaryTrace:Q8TD26 GenomeRNAi:84181 NextBio:73559
ArrayExpress:Q8TD26 Bgee:Q8TD26 CleanEx:HS_CHD6
Genevestigator:Q8TD26 GermOnline:ENSG00000124177 Uniprot:Q8TD26
Length = 2715
Score = 129 (50.5 bits), Expect = 7.6e-12, Sum P(3) = 7.6e-12
Identities = 32/85 (37%), Positives = 48/85 (56%)
Query: 24 EQVDQAKRIISPFMLRRLKKDVLTELPKKTALVIKVPMIPSQAEKYRGLME-DFKKTANP 82
EQV + + I+ P MLRRLK DV L K +I+V + Q + YR ++E +F
Sbjct: 666 EQVKKLQSILKPMMLRRLKDDVEKNLAPKQETIIEVELTNIQKKYYRAILEKNFSFLT-- 723
Query: 83 EGSNRSNEISHMSMFMMLRKMANHP 107
+G+N+ N + ++ M LRK NHP
Sbjct: 724 KGANQHNMPNLINTMMELRKCCNHP 748
Score = 118 (46.6 bits), Expect = 7.6e-12, Sum P(3) = 7.6e-12
Identities = 25/61 (40%), Positives = 39/61 (63%)
Query: 173 LVVESGKLKKLDEILPDLKKNGHRVLIFSQFIFVLDILGHYMDIRGWRHLRLDGATQVSS 232
++ +GKL +D++LP L GH+VLIFSQ + LDIL Y+ R + + R+DG + +
Sbjct: 778 MIQAAGKLVLIDKLLPKLIAGGHKVLIFSQMVRCLDILEDYLIQRRYTYERIDGRVRGNL 837
Query: 233 R 233
R
Sbjct: 838 R 838
Score = 36 (17.7 bits), Expect = 7.6e-12, Sum P(3) = 7.6e-12
Identities = 7/21 (33%), Positives = 13/21 (61%)
Query: 8 DARYEDKRKEQATFEVEQVDQ 28
+ + + KRK + T E ++DQ
Sbjct: 194 EKKKKGKRKSETTVESLELDQ 214
>UNIPROTKB|E1C1A9 [details] [associations]
symbol:CHD2 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS50013 PROSITE:PS51194
SMART:SM00298 SMART:SM00490 Pfam:PF00385 GO:GO:0005524
GO:GO:0005634 GO:GO:0003677 GO:GO:0004386 InterPro:IPR016197
SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
InterPro:IPR023780 InterPro:IPR023779 PROSITE:PS00598
InterPro:IPR025260 Pfam:PF13907 GeneTree:ENSGT00560000076896
OMA:AHSWCKN EMBL:AADN02041467 EMBL:AADN02041468 EMBL:AADN02041469
EMBL:AADN02041470 IPI:IPI00575702 Ensembl:ENSGALT00000011260
Uniprot:E1C1A9
Length = 1727
Score = 126 (49.4 bits), Expect = 8.0e-12, Sum P(2) = 8.0e-12
Identities = 27/55 (49%), Positives = 38/55 (69%)
Query: 173 LVVESGKLKKLDEILPDLKKNGHRVLIFSQFIFVLDILGHYMDIRGWRHLRLDGA 227
L+ SGKL LD++L L+ G+RVLIFSQ + +LDIL Y+ I+ + RLDG+
Sbjct: 788 LIRSSGKLILLDKLLTRLRDRGNRVLIFSQMVRMLDILAEYLTIKHYPFQRLDGS 842
Score = 112 (44.5 bits), Expect = 8.0e-12, Sum P(2) = 8.0e-12
Identities = 27/97 (27%), Positives = 51/97 (52%)
Query: 11 YEDKRKEQATFEVEQVDQAKRIISPFMLRRLKKDVLTELPKKTALVIKVPMIPSQAEKYR 70
+ED ++ +++ PF+LRR+KKDV LP K +++V M Q + Y+
Sbjct: 673 WEDFEEDHGKGRENGYQSLHKVLEPFLLRRVKKDVEKSLPAKVEQILRVEMSALQKQYYK 732
Query: 71 GLM-EDFKKTANPEGSNRSNEISHMSMFMMLRKMANH 106
++ ++K A +G+ R + +++ M L+K NH
Sbjct: 733 WILTRNYK--ALSKGT-RGSTSGFLNIVMELKKCCNH 766
Score = 37 (18.1 bits), Expect = 0.00040, Sum P(2) = 0.00040
Identities = 9/21 (42%), Positives = 11/21 (52%)
Query: 73 MEDFKKTANPEGSNRSNEISH 93
M + K+ EGS SN SH
Sbjct: 1 MRNKDKSQGEEGSVHSNASSH 21
>POMBASE|SPAC3G6.01 [details] [associations]
symbol:hrp3 "ATP-dependent DNA helicase Hrp3"
species:4896 "Schizosaccharomyces pombe" [GO:0000070 "mitotic
sister chromatid segregation" evidence=IMP] [GO:0000790 "nuclear
chromatin" evidence=NAS] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0004003 "ATP-dependent DNA helicase activity" evidence=IDA]
[GO:0005515 "protein binding" evidence=IPI] [GO:0005524 "ATP
binding" evidence=IC] [GO:0005634 "nucleus" evidence=IDA]
[GO:0006338 "chromatin remodeling" evidence=NAS] [GO:0008094
"DNA-dependent ATPase activity" evidence=ISM] [GO:0030466
"chromatin silencing at silent mating-type cassette" evidence=IMP]
[GO:0031934 "mating-type region heterochromatin" evidence=IDA]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=IEP] [GO:0060303 "regulation of
nucleosome density" evidence=IMP] [GO:0030702 "chromatin silencing
at centromere" evidence=IMP] InterPro:IPR000330 InterPro:IPR000953
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 PROSITE:PS00690
PROSITE:PS50013 PROSITE:PS51194 SMART:SM00298 SMART:SM00490
PomBase:SPAC3G6.01 Pfam:PF00385 GO:GO:0005524 EMBL:CU329670
GenomeReviews:CU329670_GR GO:GO:0003677 GO:GO:0045944 GO:GO:0006351
GO:GO:0006338 GO:GO:0030466 GO:GO:0000790 GO:GO:0000070
GO:GO:0004003 GO:GO:0031934 InterPro:IPR016197 SUPFAM:SSF54160
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
InterPro:IPR023780 InterPro:IPR023779 PROSITE:PS00598
InterPro:IPR025260 Pfam:PF13907 KO:K11367 HOGENOM:HOG000207917
OrthoDB:EOG4TF3TB GO:GO:0060303 PIR:T38720 RefSeq:NP_594967.1
ProteinModelPortal:O14139 MINT:MINT-4670837 STRING:O14139
EnsemblFungi:SPAC3G6.01.1 GeneID:2543064 KEGG:spo:SPAC3G6.01
OMA:HINGSST NextBio:20804092 Uniprot:O14139
Length = 1388
Score = 173 (66.0 bits), Expect = 1.2e-11, P = 1.2e-11
Identities = 51/168 (30%), Positives = 85/168 (50%)
Query: 70 RGLMEDFKKTANPEGSNR--SNEISHMSMFMMLRKMANHPLGLRYYFQENTLREIADCLV 127
R L +D +K+ P S R E+S + M+ + + L + + + +V
Sbjct: 591 RRLKKDVEKSL-PSKSERILRVELSDLQMYWYKNILTRNYRVLTQSISSGSQISLLNIVV 649
Query: 128 EDPTYKGTNPQYILEDI--SWLSDYDIHQLSLKHKTLDCAKYKVPDDLVVESGKLKKLDE 185
E K +N Y+ + + SW+ I+ + + L L++ SGK+ LD+
Sbjct: 650 E--LKKASNHPYLFDGVEESWMQK--INSQGRRDEVLK--------GLIMNSGKMVLLDK 697
Query: 186 ILPDLKKNGHRVLIFSQFIFVLDILGHYMDIRGWRHLRLDGATQVSSR 233
+L L+++GHRVLIFSQ + +LDILG Y+ +RG+ H RLDG + R
Sbjct: 698 LLSRLRRDGHRVLIFSQMVRMLDILGDYLSLRGYPHQRLDGTVPAAVR 745
>TAIR|locus:2054955 [details] [associations]
symbol:ASG3 "ALTERED SEED GERMINATION 3" species:3702
"Arabidopsis thaliana" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA;ISS]
[GO:0004386 "helicase activity" evidence=IEA;ISS] [GO:0005524 "ATP
binding" evidence=IEA;ISS] [GO:0005634 "nucleus" evidence=ISM]
InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 EMBL:CP002685
GO:GO:0003677 GO:GO:0004386 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 IPI:IPI00520375 RefSeq:NP_973689.2 UniGene:At.47803
ProteinModelPortal:F4IV45 SMR:F4IV45 PRIDE:F4IV45
EnsemblPlants:AT2G44980.2 GeneID:819106 KEGG:ath:AT2G44980
OMA:WALMHFC PhylomeDB:F4IV45 ArrayExpress:F4IV45 Uniprot:F4IV45
Length = 877
Score = 138 (53.6 bits), Expect = 1.2e-11, Sum P(2) = 1.2e-11
Identities = 29/63 (46%), Positives = 41/63 (65%)
Query: 171 DDLVVESGKLKKLDEILPDLKKNGHRVLIFSQFIFVLDILGHYMDIRGWRHLRLDGATQV 230
+ LV SGKL LD++L L +GHRVL+FSQ LDIL +M++R + + RLDG+ +
Sbjct: 370 EHLVQASGKLLVLDQLLKRLHDSGHRVLLFSQMTSTLDILQDFMELRRYSYERLDGSVRA 429
Query: 231 SSR 233
R
Sbjct: 430 EER 432
Score = 89 (36.4 bits), Expect = 1.2e-11, Sum P(2) = 1.2e-11
Identities = 26/88 (29%), Positives = 39/88 (44%)
Query: 24 EQVDQAKRIISPFMLRRLKKDVLTE----LPKKTALVIKVPMIPSQAEKYRGLMEDFKKT 79
E K I+ FMLRR K ++ LP T L + VP++ Q + Y ++
Sbjct: 268 ETYKSLKFILGAFMLRRTKSLLIESGNLVLPPLTELTVMVPLVSLQKKIYTSILRKELPG 327
Query: 80 ANPEGSNRSNEISHMSMFMMLRKMANHP 107
S SN S ++ + LRK +HP
Sbjct: 328 LLELSSGGSNHTSLQNIVIQLRKACSHP 355
>POMBASE|SPCC1620.14c [details] [associations]
symbol:snf22 "ATP-dependent DNA helicase Snf22"
species:4896 "Schizosaccharomyces pombe" [GO:0000122 "negative
regulation of transcription from RNA polymerase II promoter"
evidence=IEP] [GO:0000790 "nuclear chromatin" evidence=IC]
[GO:0000991 "core RNA polymerase II binding transcription factor
activity" evidence=ISO] [GO:0003677 "DNA binding" evidence=IC]
[GO:0004003 "ATP-dependent DNA helicase activity" evidence=ISM]
[GO:0005524 "ATP binding" evidence=IC] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005819 "spindle" evidence=IDA] [GO:0006338
"chromatin remodeling" evidence=IGI] [GO:0007131 "reciprocal
meiotic recombination" evidence=IMP] [GO:0010972 "negative
regulation of G2/M transition of mitotic cell cycle" evidence=IMP]
[GO:0016514 "SWI/SNF complex" evidence=IDA] [GO:0043044
"ATP-dependent chromatin remodeling" evidence=ISS] [GO:0045944
"positive regulation of transcription from RNA polymerase II
promoter" evidence=IEP] [GO:1900389 "regulation of glucose import
by regulation of transcription from RNA polymerase II promoter"
evidence=IMP] [GO:1900400 "regulation of iron ion import by
regulation of transcription from RNA polymerase II promoter"
evidence=IMP] InterPro:IPR000330 InterPro:IPR001487
InterPro:IPR001650 InterPro:IPR014978 InterPro:IPR017956
Pfam:PF00176 Pfam:PF00271 Pfam:PF00439 Pfam:PF08880 PRINTS:PR00503
PROSITE:PS50014 PROSITE:PS51194 SMART:SM00297 SMART:SM00384
SMART:SM00490 SMART:SM00951 PomBase:SPCC1620.14c GO:GO:0005524
GO:GO:0005819 EMBL:CU329672 GenomeReviews:CU329672_GR GO:GO:0003677
GO:GO:0045944 GO:GO:0000122 GO:GO:0000790 GO:GO:0016514
GO:GO:0004003 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0043044 GO:GO:0000991 Gene3D:1.20.920.10
SUPFAM:SSF47370 PROSITE:PS00633 InterPro:IPR018359 GO:GO:0007131
InterPro:IPR014012 PROSITE:PS51204 GO:GO:0010972
HOGENOM:HOG000172362 KO:K11786 OrthoDB:EOG4D565R EMBL:AB162437
PIR:T41628 RefSeq:NP_588472.2 ProteinModelPortal:O94421
DIP:DIP-48377N STRING:O94421 PRIDE:O94421
EnsemblFungi:SPCC1620.14c.1 GeneID:2538881 KEGG:spo:SPCC1620.14c
NextBio:20800061 GO:GO:1900389 GO:GO:1900400 Uniprot:O94421
Length = 1680
Score = 124 (48.7 bits), Expect = 1.3e-11, Sum P(2) = 1.3e-11
Identities = 23/57 (40%), Positives = 36/57 (63%)
Query: 177 SGKLKKLDEILPDLKKNGHRVLIFSQFIFVLDILGHYMDIRGWRHLRLDGATQVSSR 233
+GK + LD ILP L GH+ L+F Q ++ I+ Y+ + W++LRLDG+T+ R
Sbjct: 1186 AGKFELLDRILPKLFLTGHKTLMFFQMTQIMTIMEDYLRSKNWKYLRLDGSTKSDDR 1242
Score = 112 (44.5 bits), Expect = 1.3e-11, Sum P(2) = 1.3e-11
Identities = 26/82 (31%), Positives = 43/82 (52%)
Query: 26 VDQAKRIISPFMLRRLKKDVLTELPKKTALVIKVPMIPSQAEKYRGLMEDFKKTANPEGS 85
+ + +++ PF+ RRLKKDV ELP K VIK P+ Q + Y+ + + + E
Sbjct: 1082 IKRLHKVLRPFLFRRLKKDVEKELPDKVEKVIKCPLSGLQLKLYQQMKKHGMLFVDGE-K 1140
Query: 86 NRSNEISHMSMFMMLRKMANHP 107
++ + M L+K+ NHP
Sbjct: 1141 GKTGIKGLQNTVMQLKKICNHP 1162
Score = 36 (17.7 bits), Expect = 0.00082, Sum P(2) = 0.00082
Identities = 9/27 (33%), Positives = 14/27 (51%)
Query: 14 KRKEQATFEVEQVDQAKRIISPFMLRR 40
+R AT V+ AK +SP L++
Sbjct: 518 RRAYSATIPVKNESLAKPSVSPMPLQQ 544
>RGD|1306794 [details] [associations]
symbol:Chd1 "chromodomain helicase DNA binding protein 1"
species:10116 "Rattus norvegicus" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0006338 "chromatin remodeling" evidence=ISO]
[GO:0035064 "methylated histone residue binding" evidence=ISO]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS50013 PROSITE:PS51194
SMART:SM00298 SMART:SM00490 Pfam:PF00385 RGD:1306794 GO:GO:0005524
GO:GO:0005634 GO:GO:0003677 GO:GO:0006338 GO:GO:0004386
InterPro:IPR016197 SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 InterPro:IPR023780 InterPro:IPR023779
PROSITE:PS00598 GeneTree:ENSGT00560000076896 OrthoDB:EOG4PG601
IPI:IPI00767719 Ensembl:ENSRNOT00000019358 UCSC:RGD:1306794
Uniprot:D4AAG9
Length = 904
Score = 124 (48.7 bits), Expect = 1.3e-11, Sum P(2) = 1.3e-11
Identities = 28/62 (45%), Positives = 40/62 (64%)
Query: 166 KYKVPDDLVVESGKLKKLDEILPDLKKNGHRVLIFSQFIFVLDILGHYMDIRGWRHLRLD 225
K + L+ SGKL LD++L L++ G+RVLIFSQ + +LDIL Y+ R + RLD
Sbjct: 774 KQEALQHLIRSSGKLILLDKLLIRLRERGNRVLIFSQMVRMLDILAEYLKYRQFPFQRLD 833
Query: 226 GA 227
G+
Sbjct: 834 GS 835
Score = 106 (42.4 bits), Expect = 1.3e-11, Sum P(2) = 1.3e-11
Identities = 29/102 (28%), Positives = 51/102 (50%)
Query: 6 EDDARYEDKRKEQATFEVEQVDQAKRIISPFMLRRLKKDVLTELPKKTALVIKVPMIPSQ 65
E + +ED +E + + PF+LRR+KKDV LP K ++++ M Q
Sbjct: 661 EKFSSWEDFEEEHGKGREYGYASLHKELEPFLLRRVKKDVEKSLPAKVEQILRMEMSALQ 720
Query: 66 AEKYRGLM-EDFKKTANPEGSNRSNEISHMSMFMMLRKMANH 106
+ Y+ ++ ++K A +GS S +++ M L+K NH
Sbjct: 721 KQYYKWILTRNYK--ALSKGSKGSTS-GFLNIMMELKKCCNH 759
Score = 49 (22.3 bits), Expect = 9.7e-06, Sum P(2) = 9.7e-06
Identities = 17/47 (36%), Positives = 25/47 (53%)
Query: 3 SDSEDDARYE-DKR--KEQATFEVE-QVDQAKRIISPFMLRRLKKDV 45
S+ EDD Y+ DKR + QAT V + D+ + S +L +DV
Sbjct: 215 SEDEDDEDYDNDKRSSRRQATVNVSYKEDEEMKTDSDDLLEVCGEDV 261
>ASPGD|ASPL0000048785 [details] [associations]
symbol:AN1956 species:162425 "Emericella nidulans"
[GO:0016581 "NuRD complex" evidence=IEA] [GO:0033553 "rDNA
heterochromatin" evidence=IEA] [GO:0044732 "mitotic spindle pole
body" evidence=IEA] [GO:0005721 "centromeric heterochromatin"
evidence=IEA] [GO:0031934 "mating-type region heterochromatin"
evidence=IEA] [GO:0031933 "telomeric heterochromatin" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0016887 "ATPase
activity" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0000122 "negative regulation
of transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0030466 "chromatin silencing at silent mating-type cassette"
evidence=IEA] [GO:0000183 "chromatin silencing at rDNA"
evidence=IEA] [GO:0016584 "nucleosome positioning" evidence=IEA]
[GO:0030702 "chromatin silencing at centromere" evidence=IEA]
InterPro:IPR000014 InterPro:IPR000330 InterPro:IPR000953
InterPro:IPR001650 InterPro:IPR001965 InterPro:IPR019787
Pfam:PF00176 Pfam:PF00271 PROSITE:PS50016 PROSITE:PS51194
SMART:SM00091 SMART:SM00249 SMART:SM00298 SMART:SM00490
Pfam:PF00385 GO:GO:0005524 GO:GO:0005634 GO:GO:0046872
GO:GO:0003677 EMBL:BN001307 GO:GO:0008270 GO:GO:0004871
Gene3D:3.30.40.10 InterPro:IPR011011 InterPro:IPR013083
SUPFAM:SSF57903 GO:GO:0004386 InterPro:IPR019786 PROSITE:PS01359
EMBL:AACD01000029 InterPro:IPR016197 SUPFAM:SSF54160 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 InterPro:IPR023780
OrthoDB:EOG4GQTD1 RefSeq:XP_659560.1 ProteinModelPortal:Q5BBX4
EnsemblFungi:CADANIAT00008616 GeneID:2875239 KEGG:ani:AN1956.2
HOGENOM:HOG000192830 OMA:SFARVWA Uniprot:Q5BBX4
Length = 1443
Score = 131 (51.2 bits), Expect = 1.4e-11, Sum P(2) = 1.4e-11
Identities = 27/55 (49%), Positives = 39/55 (70%)
Query: 172 DLVVESGKLKKLDEILPDLKKNGHRVLIFSQFIFVLDILGHYMDIRGWRHLRLDG 226
+LV +GKL+ L+ +LP L+ GHRVL+FSQF+ LD++ ++D G H RLDG
Sbjct: 916 NLVDAAGKLQLLELMLPKLQARGHRVLVFSQFLENLDVMEDFLDGLGLPHRRLDG 970
Score = 102 (41.0 bits), Expect = 1.4e-11, Sum P(2) = 1.4e-11
Identities = 28/115 (24%), Positives = 50/115 (43%)
Query: 12 EDKRKEQATFEVEQVDQAKRIISPFMLRRLKKDVLTELPKKTALVIKVPMIPSQAEKYRG 71
E+ ++ T E + + +I PF LRR K VLT LP +++ V M Q + Y+
Sbjct: 793 EELEEKYGTLSKENIPELHELIRPFFLRRTKAQVLTFLPPVVQIIVPVTMSVLQKKLYKS 852
Query: 72 LMED--------FKKTANPEGSNRSNEISHMSMFMMLRKMANHPLGLRYYFQENT 118
++ F++ + ++ + ++ M LRK HP +E T
Sbjct: 853 ILAKNTQLIKAIFQRNEEDQPLKQTERHNLNNILMQLRKCLCHPFIFSKAIEERT 907
>FB|FBgn0262519 [details] [associations]
symbol:Mi-2 species:7227 "Drosophila melanogaster"
[GO:0016887 "ATPase activity" evidence=IDA;NAS] [GO:0005634
"nucleus" evidence=ISS;IDA;NAS] [GO:0004003 "ATP-dependent DNA
helicase activity" evidence=ISS] [GO:0004386 "helicase activity"
evidence=ISS] [GO:0016581 "NuRD complex" evidence=ISS;TAS]
[GO:0006333 "chromatin assembly or disassembly" evidence=ISS]
[GO:0003682 "chromatin binding" evidence=ISS;IDA] [GO:0003678 "DNA
helicase activity" evidence=ISS] [GO:0005700 "polytene chromosome"
evidence=IDA] [GO:0042766 "nucleosome mobilization" evidence=IDA]
[GO:0003677 "DNA binding" evidence=IDA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0005515 "protein binding" evidence=IPI] [GO:0007517 "muscle
organ development" evidence=IMP] [GO:0048813 "dendrite
morphogenesis" evidence=IMP] [GO:0031491 "nucleosome binding"
evidence=IDA] [GO:0000122 "negative regulation of transcription
from RNA polymerase II promoter" evidence=IDA] [GO:0070615
"nucleosome-dependent ATPase activity" evidence=IDA]
InterPro:IPR001841 InterPro:IPR000330 InterPro:IPR000953
InterPro:IPR001650 InterPro:IPR001965 InterPro:IPR002464
InterPro:IPR012957 InterPro:IPR012958 InterPro:IPR019787
Pfam:PF00176 Pfam:PF00271 Pfam:PF00628 Pfam:PF08073 Pfam:PF08074
PROSITE:PS00690 PROSITE:PS50013 PROSITE:PS50016 PROSITE:PS51194
SMART:SM00184 SMART:SM00249 SMART:SM00298 SMART:SM00490
Pfam:PF00385 GO:GO:0005524 EMBL:AE014296 GO:GO:0046872
GO:GO:0003677 GO:GO:0008270 GO:GO:0006351 GO:GO:0000122
GO:GO:0048813 GO:GO:0007517 Gene3D:3.30.40.10 InterPro:IPR011011
InterPro:IPR013083 SUPFAM:SSF57903 GO:GO:0004003 InterPro:IPR019786
PROSITE:PS01359 GO:GO:0005700 GO:GO:0042766 InterPro:IPR016197
SUPFAM:SSF54160 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0031491 GO:GO:0016581 InterPro:IPR023780
PROSITE:PS00598 GeneTree:ENSGT00560000076896 InterPro:IPR009462
InterPro:IPR009463 Pfam:PF06461 Pfam:PF06465 KO:K11643
EMBL:AF119716 EMBL:AY113368 RefSeq:NP_001163476.1
RefSeq:NP_649154.2 UniGene:Dm.28317 ProteinModelPortal:O97159
SMR:O97159 DIP:DIP-22862N IntAct:O97159 MINT:MINT-864813
STRING:O97159 PaxDb:O97159 EnsemblMetazoa:FBtr0074919
EnsemblMetazoa:FBtr0302046 GeneID:40170 KEGG:dme:Dmel_CG8103
CTD:40170 FlyBase:FBgn0262519 InParanoid:O97159 OrthoDB:EOG4T76J4
ChiTaRS:Mi-2 GenomeRNAi:40170 NextBio:817384 Bgee:O97159
GermOnline:CG8103 Uniprot:O97159
Length = 1982
Score = 127 (49.8 bits), Expect = 2.0e-11, Sum P(2) = 2.0e-11
Identities = 31/102 (30%), Positives = 55/102 (53%)
Query: 10 RYEDKRKEQATF-EVEQVDQAKRI---ISPFMLRRLKKDVLTELPKKTALVIKVPMIPSQ 65
++ D + Q F +V + +Q KR+ + P MLRRLK DVL +P K+ +++V + Q
Sbjct: 925 KFNDLQAFQGEFADVSKEEQVKRLHEMLGPHMLRRLKTDVLKNMPSKSEFIVRVELSAMQ 984
Query: 66 AEKYRGLMEDFKKTANPEGSNRSNEISHMSMFMMLRKMANHP 107
+ Y+ ++ + N + S S +++ M L+K NHP
Sbjct: 985 KKFYKFILTKNYEALNSKSGGGS--CSLINIMMDLKKCCNHP 1024
Score = 108 (43.1 bits), Expect = 2.0e-11, Sum P(2) = 2.0e-11
Identities = 24/60 (40%), Positives = 38/60 (63%)
Query: 167 YKVPDDLVVESGKLKKLDEILPDLKKNGHRVLIFSQFIFVLDILGHYMDIRGWRHLRLDG 226
Y++ + L +GKL L ++L LK HRVLIFSQ +LDIL +++ +++ R+DG
Sbjct: 1042 YEI-NSLTKAAGKLVLLSKMLKQLKAQNHRVLIFSQMTKMLDILEDFLEGEQYKYERIDG 1100
Score = 45 (20.9 bits), Expect = 6.1e-05, Sum P(2) = 6.1e-05
Identities = 20/83 (24%), Positives = 38/83 (45%)
Query: 116 ENTLREIADC-LVEDPTYKGTNPQYILEDISWLSDYDIHQLSLKHKTLDCAKYKVPDDLV 174
E LR A L +DP++ + ++ L++ HQ H + + P + V
Sbjct: 1826 EEQLRRAAYLNLAQDPSHPAMSLNARFAEVECLAES--HQ----HLSKESLAGNKPANAV 1879
Query: 175 VESGKLKKLDEILPDLKKNGHRV 197
+ L +L+E+L D+K + R+
Sbjct: 1880 LHK-VLNQLEELLSDMKSDVSRL 1901
>FB|FBgn0000212 [details] [associations]
symbol:brm "brahma" species:7227 "Drosophila melanogaster"
[GO:0043044 "ATP-dependent chromatin remodeling" evidence=ISS;IDA]
[GO:0045893 "positive regulation of transcription, DNA-dependent"
evidence=ISS;IDA] [GO:0016887 "ATPase activity" evidence=ISS]
[GO:0008094 "DNA-dependent ATPase activity" evidence=NAS]
[GO:0003713 "transcription coactivator activity" evidence=ISS;NAS]
[GO:0005634 "nucleus" evidence=IDA;NAS] [GO:0048096
"chromatin-mediated maintenance of transcription" evidence=NAS]
[GO:0005515 "protein binding" evidence=IPI] [GO:0035060 "brahma
complex" evidence=IDA;TAS] [GO:0048477 "oogenesis" evidence=TAS]
[GO:0045749 "negative regulation of S phase of mitotic cell cycle"
evidence=IGI] [GO:0035172 "hemocyte proliferation" evidence=TAS]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0007474 "imaginal disc-derived wing vein specification"
evidence=IMP] [GO:0048666 "neuron development" evidence=IMP]
[GO:0007517 "muscle organ development" evidence=IMP] [GO:0048813
"dendrite morphogenesis" evidence=IMP] [GO:0006911 "phagocytosis,
engulfment" evidence=IMP] [GO:0007409 "axonogenesis" evidence=IMP]
[GO:0007480 "imaginal disc-derived leg morphogenesis" evidence=IGI]
[GO:0008586 "imaginal disc-derived wing vein morphogenesis"
evidence=IMP] [GO:0008587 "imaginal disc-derived wing margin
morphogenesis" evidence=IMP] [GO:0045742 "positive regulation of
epidermal growth factor receptor signaling pathway" evidence=IMP]
[GO:0070983 "dendrite guidance" evidence=IMP] [GO:0022008
"neurogenesis" evidence=IMP] [GO:0043974 "histone H3-K27
acetylation" evidence=IMP] InterPro:IPR000330 InterPro:IPR001487
InterPro:IPR001650 InterPro:IPR006576 InterPro:IPR014978
Pfam:PF00176 Pfam:PF00271 Pfam:PF00439 Pfam:PF07533 Pfam:PF08880
PRINTS:PR00503 PROSITE:PS50014 PROSITE:PS51194 SMART:SM00297
SMART:SM00490 SMART:SM00592 SMART:SM00951 GO:GO:0005524
GO:GO:0045893 GO:GO:0006911 EMBL:AE014296 GO:GO:0003677
GO:GO:0008586 GO:GO:0007474 GO:GO:0048477 GO:GO:0006351
GO:GO:0016887 GO:GO:0007517 GO:GO:0007409 GO:GO:0004386
GO:GO:0045742 GO:GO:0007480 GO:GO:0045749 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0043044
Gene3D:1.20.920.10 SUPFAM:SSF47370 PROSITE:PS00633
InterPro:IPR018359 GO:GO:0008587 KO:K11647 EMBL:M85049
EMBL:AY095048 EMBL:BT009972 PIR:A42091 RefSeq:NP_536745.4
RefSeq:NP_536746.1 RefSeq:NP_730088.1 RefSeq:NP_730089.1
UniGene:Dm.5356 ProteinModelPortal:P25439 SMR:P25439 DIP:DIP-36728N
IntAct:P25439 MINT:MINT-6541230 STRING:P25439 PaxDb:P25439
EnsemblMetazoa:FBtr0075525 EnsemblMetazoa:FBtr0075526 GeneID:39744
KEGG:dme:Dmel_CG5942 CTD:39744 FlyBase:FBgn0000212
GeneTree:ENSGT00550000074659 InParanoid:P25439 OMA:QKKYTIS
OrthoDB:EOG4K3JB3 PhylomeDB:P25439 ChiTaRS:SMARCA2 GenomeRNAi:39744
NextBio:815155 Bgee:P25439 GermOnline:CG5942 GO:GO:0035060
GO:GO:0070983 GO:GO:0035172 GO:GO:0043974 InterPro:IPR013999
InterPro:IPR014012 InterPro:IPR006562 Pfam:PF07529 SMART:SM00573
PROSITE:PS51204 Uniprot:P25439
Length = 1638
Score = 127 (49.8 bits), Expect = 2.2e-11, Sum P(2) = 2.2e-11
Identities = 28/62 (45%), Positives = 36/62 (58%)
Query: 172 DLVVESGKLKKLDEILPDLKKNGHRVLIFSQFIFVLDILGHYMDIRGWRHLRLDGATQVS 231
DL SGK + LD ILP LK HRVL+F Q + I+ Y+ R + +LRLDG T+
Sbjct: 1092 DLYRVSGKFELLDRILPKLKATNHRVLLFCQMTQCMTIIEDYLGWRQFGYLRLDGTTKAE 1151
Query: 232 SR 233
R
Sbjct: 1152 DR 1153
Score = 106 (42.4 bits), Expect = 2.2e-11, Sum P(2) = 2.2e-11
Identities = 25/80 (31%), Positives = 42/80 (52%)
Query: 31 RIISPFMLRRLKKDVLTELPKKTALVIKVPMIPSQAEKYRGLMED--FKKTANPEGSN-R 87
+++ PF+LRRLKK+V +LP K +IK M Q Y+ + + +G + +
Sbjct: 989 KVLRPFLLRRLKKEVEHQLPDKVEYIIKCDMSALQRVLYKHMQSKGVLLTDGSEKGKHGK 1048
Query: 88 SNEISHMSMFMMLRKMANHP 107
+ M+ + LRK+ NHP
Sbjct: 1049 GGAKALMNTIVQLRKLCNHP 1068
>FB|FBgn0250786 [details] [associations]
symbol:Chd1 "Chromodomain-helicase-DNA-binding protein 1"
species:7227 "Drosophila melanogaster" [GO:0005705 "polytene
chromosome interband" evidence=IDA] [GO:0004386 "helicase activity"
evidence=ISS] [GO:0003682 "chromatin binding" evidence=IDA]
[GO:0005703 "polytene chromosome puff" evidence=IDA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0035042 "fertilization,
exchange of chromosomal proteins" evidence=IMP] [GO:0048477
"oogenesis" evidence=IMP] [GO:0007476 "imaginal disc-derived wing
morphogenesis" evidence=IMP] InterPro:IPR000330 InterPro:IPR000953
InterPro:IPR001650 InterPro:IPR002464 Pfam:PF00176 Pfam:PF00271
PROSITE:PS00690 PROSITE:PS50013 PROSITE:PS51194 SMART:SM00298
SMART:SM00490 Pfam:PF00385 GO:GO:0005524 GO:GO:0005634
EMBL:AE014134 GO:GO:0006355 GO:GO:0003677 GO:GO:0048477
GO:GO:0006351 GO:GO:0003682 GO:GO:0004386 GO:GO:0007476
InterPro:IPR016197 SUPFAM:SSF54160 HSSP:Q97XQ5 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR023780 InterPro:IPR023779 PROSITE:PS00598 GO:GO:0005703
InterPro:IPR025260 Pfam:PF13907 EMBL:L77907 PIR:T13944
RefSeq:NP_477197.1 ProteinModelPortal:Q7KU24 SMR:Q7KU24
STRING:Q7KU24 PaxDb:Q7KU24 PRIDE:Q7KU24 EnsemblMetazoa:FBtr0077674
GeneID:33505 KEGG:dme:Dmel_CG3733 UCSC:CG3733-RA CTD:1105
FlyBase:FBgn0250786 GeneTree:ENSGT00560000076896 InParanoid:Q7KU24
KO:K11367 OrthoDB:EOG45MKM5 PhylomeDB:Q7KU24 ChiTaRS:CHD1
GenomeRNAi:33505 NextBio:783939 Bgee:Q7KU24 GO:GO:0005705
GO:GO:0035042 Uniprot:Q7KU24
Length = 1883
Score = 129 (50.5 bits), Expect = 2.5e-11, Sum P(3) = 2.5e-11
Identities = 29/61 (47%), Positives = 40/61 (65%)
Query: 173 LVVESGKLKKLDEILPDLKKNGHRVLIFSQFIFVLDILGHYMDIRGWRHLRLDGATQVSS 232
L+ SGKL LD++L LK+ GHRVLIFSQ + +LD+L Y+ R + RLDG+ +
Sbjct: 831 LLKGSGKLVLLDKLLCRLKETGHRVLIFSQMVRMLDVLADYLQKRHFPFQRLDGSIKGEM 890
Query: 233 R 233
R
Sbjct: 891 R 891
Score = 96 (38.9 bits), Expect = 2.5e-11, Sum P(3) = 2.5e-11
Identities = 24/80 (30%), Positives = 46/80 (57%)
Query: 33 ISPFMLRRLKKDVLTELPKKTALVIKVPMIPSQAEKYRGLM-EDFKKTANPEGSNRSNEI 91
+ P++LRR+KKDV LP K +++V M Q + Y+ ++ ++F A +G R +
Sbjct: 737 LEPYILRRVKKDVEKSLPAKVEQILRVEMTSLQKQYYKWILTKNFD--ALRKGK-RGSTS 793
Query: 92 SHMSMFMMLRKMANHPLGLR 111
+ +++ + L+K NH +R
Sbjct: 794 TFLNIVIELKKCCNHAALIR 813
Score = 48 (22.0 bits), Expect = 2.5e-11, Sum P(3) = 2.5e-11
Identities = 12/35 (34%), Positives = 18/35 (51%)
Query: 4 DSEDDARYEDKRKEQATFEVEQV--DQAKRIISPF 36
DS+D+ KRK AT ++ Q +R + PF
Sbjct: 221 DSDDEVSTAQKRKPAATTSRSKLAQQQQRRRVKPF 255
>WB|WBGene00007027 [details] [associations]
symbol:ssl-1 species:6239 "Caenorhabditis elegans"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0009792 "embryo
development ending in birth or egg hatching" evidence=IMP]
[GO:0000003 "reproduction" evidence=IMP] [GO:0040011 "locomotion"
evidence=IMP] [GO:0040010 "positive regulation of growth rate"
evidence=IMP] [GO:0040007 "growth" evidence=IMP] [GO:0002119
"nematode larval development" evidence=IMP] [GO:0040035
"hermaphrodite genitalia development" evidence=IMP]
InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
GO:GO:0009792 GO:GO:0040007 GO:GO:0040010 GO:GO:0002119
GO:GO:0003677 GO:GO:0040011 GO:GO:0016568 GO:GO:0040035
GO:GO:0004386 HSSP:Q97XQ5 eggNOG:COG0553 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 InterPro:IPR014012 InterPro:IPR006562
Pfam:PF07529 PROSITE:PS51204 GeneTree:ENSGT00530000063427 KO:K11320
EMBL:AL132904 EMBL:AY551965 RefSeq:NP_001255179.1
RefSeq:NP_001255180.1 RefSeq:NP_001255181.1 RefSeq:NP_001255182.1
UniGene:Cel.203 ProteinModelPortal:Q9NEL2 SMR:Q9NEL2
MINT:MINT-3384018 PaxDb:Q9NEL2 EnsemblMetazoa:Y111B2A.22a
GeneID:190954 KEGG:cel:CELE_Y111B2A.22 UCSC:Y111B2A.22 CTD:190954
WormBase:Y111B2A.22a WormBase:Y111B2A.22b WormBase:Y111B2A.22c
WormBase:Y111B2A.22d InParanoid:Q9NEL2 OMA:HLACSES NextBio:947488
ArrayExpress:Q9NEL2 Uniprot:Q9NEL2
Length = 2395
Score = 132 (51.5 bits), Expect = 3.4e-11, Sum P(3) = 3.4e-11
Identities = 29/88 (32%), Positives = 51/88 (57%)
Query: 21 FEVEQVDQAKRIISPFMLRRLKKDVLTELPKKTALVIKVPMIPSQAEKYRGLMEDF-KKT 79
F + + +++ PF+LRRLKK+V +LP+KT ++ + S+ ++Y L +DF +
Sbjct: 761 FNAPLIGRLHKVLRPFILRRLKKEVEKQLPEKTEHIVNCSL--SKRQRY--LYDDFMSRR 816
Query: 80 ANPEGSNRSNEISHMSMFMMLRKMANHP 107
+ E N +S +++ M LRK NHP
Sbjct: 817 STKENLKSGNMMSVLNIVMQLRKCCNHP 844
Score = 103 (41.3 bits), Expect = 3.4e-11, Sum P(3) = 3.4e-11
Identities = 23/58 (39%), Positives = 34/58 (58%)
Query: 176 ESGKLKKLDEILPDLKKNGHRVLIFSQFIFVLDILGHYMDIRGWRHLRLDGATQVSSR 233
+ GKL+ L +L L HR LIF+Q +LD+L ++ G+++ RLDG T V R
Sbjct: 1186 DCGKLQTLAVLLRQLYLYKHRCLIFTQMSKMLDVLQTFLSHHGYQYFRLDGTTGVEQR 1243
Score = 39 (18.8 bits), Expect = 3.4e-11, Sum P(3) = 3.4e-11
Identities = 10/27 (37%), Positives = 15/27 (55%)
Query: 2 DSDSEDDARYEDKRKEQATFEVEQ-VD 27
DS+S+D+ + K Q +V Q VD
Sbjct: 380 DSESDDEQTIANAEKSQKKEDVRQEVD 406
>TAIR|locus:2062840 [details] [associations]
symbol:SYD "SPLAYED" species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
"nucleus" evidence=ISM;IDA] [GO:0009908 "flower development"
evidence=IMP] [GO:0016887 "ATPase activity" evidence=ISS]
[GO:0003682 "chromatin binding" evidence=IPI] [GO:0010199 "organ
boundary specification between lateral organs and the meristem"
evidence=IGI] [GO:0043044 "ATP-dependent chromatin remodeling"
evidence=NAS] [GO:0040029 "regulation of gene expression,
epigenetic" evidence=RCA;IMP] [GO:0009611 "response to wounding"
evidence=IEP] [GO:0005829 "cytosol" evidence=IDA] [GO:0000226
"microtubule cytoskeleton organization" evidence=RCA] [GO:0000911
"cytokinesis by cell plate formation" evidence=RCA] [GO:0006306
"DNA methylation" evidence=RCA] [GO:0006342 "chromatin silencing"
evidence=RCA] [GO:0007267 "cell-cell signaling" evidence=RCA]
[GO:0009616 "virus induced gene silencing" evidence=RCA]
[GO:0009640 "photomorphogenesis" evidence=RCA] [GO:0009793 "embryo
development ending in seed dormancy" evidence=RCA] [GO:0009845
"seed germination" evidence=RCA] [GO:0009909 "regulation of flower
development" evidence=RCA] [GO:0009933 "meristem structural
organization" evidence=RCA] [GO:0010162 "seed dormancy process"
evidence=RCA] [GO:0010182 "sugar mediated signaling pathway"
evidence=RCA] [GO:0010228 "vegetative to reproductive phase
transition of meristem" evidence=RCA] [GO:0010267 "production of
ta-siRNAs involved in RNA interference" evidence=RCA] [GO:0016567
"protein ubiquitination" evidence=RCA] [GO:0019915 "lipid storage"
evidence=RCA] [GO:0035196 "production of miRNAs involved in gene
silencing by miRNA" evidence=RCA] [GO:0050826 "response to
freezing" evidence=RCA] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR014978 Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 SMART:SM00951 GO:GO:0005829 GO:GO:0005524
GO:GO:0005634 EMBL:CP002685 GO:GO:0009611 GO:GO:0006355
GO:GO:0003677 GO:GO:0003682 GO:GO:0016887 GO:GO:0004386
GO:GO:0009908 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0043044 GO:GO:0010199 GO:GO:0040029 InterPro:IPR014012
PROSITE:PS51204 IPI:IPI00516285 RefSeq:NP_850116.1 UniGene:At.22414
PRIDE:F4IHS2 EnsemblPlants:AT2G28290.1 GeneID:817375
KEGG:ath:AT2G28290 OMA:SDLYAIS Uniprot:F4IHS2
Length = 3574
Score = 138 (53.6 bits), Expect = 4.0e-11, Sum P(2) = 4.0e-11
Identities = 29/68 (42%), Positives = 43/68 (63%)
Query: 166 KYKVPDDLVVESGKLKKLDEILPDLKKNGHRVLIFSQFIFVLDILGHYMDIRGWRHLRLD 225
K+ +P +V GKL+ LD +LP LK HRVL FS +LD++ Y+ ++G+++LRLD
Sbjct: 1062 KHFLPP-IVRLCGKLEMLDRMLPKLKATDHRVLFFSTMTRLLDVMEDYLTLKGYKYLRLD 1120
Query: 226 GATQVSSR 233
G T R
Sbjct: 1121 GQTSGGDR 1128
Score = 97 (39.2 bits), Expect = 4.0e-11, Sum P(2) = 4.0e-11
Identities = 28/84 (33%), Positives = 46/84 (54%)
Query: 26 VDQAKRIISPFMLRRLKKDVLTELPKKTALVIKVPMIPSQAEKYRGLMEDFKKTANPEGS 85
+++ +++ PF+LRRLK V ELP+K +I+ +A Y+ L+ K+ + GS
Sbjct: 971 INRLHQVLRPFVLRRLKHKVENELPEKIERLIRC-----EASAYQKLL--MKRVEDNLGS 1023
Query: 86 --NRSNEISHMSMFMMLRKMANHP 107
N + H S+ M LR + NHP
Sbjct: 1024 IGNAKSRAVHNSV-MELRNICNHP 1046
>UNIPROTKB|H9L0N0 [details] [associations]
symbol:H9L0N0 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001650
Pfam:PF00176 PROSITE:PS50013 PROSITE:PS51194 SMART:SM00298
Pfam:PF00385 GO:GO:0005524 GO:GO:0005634 GO:GO:0003677
GO:GO:0004386 InterPro:IPR016197 SUPFAM:SSF54160 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 InterPro:IPR023780 InterPro:IPR023779
PROSITE:PS00598 InterPro:IPR025260 Pfam:PF13907
GeneTree:ENSGT00560000076896 EMBL:AADN02032856 EMBL:AADN02032857
EMBL:AADN02032858 EMBL:AADN02032859 EMBL:AADN02032860
EMBL:AADN02032861 EMBL:AADN02032862 EMBL:AADN02032863
EMBL:AADN02032864 EMBL:AADN02032865 Ensembl:ENSGALT00000023599
Uniprot:H9L0N0
Length = 1444
Score = 124 (48.7 bits), Expect = 4.9e-11, Sum P(2) = 4.9e-11
Identities = 28/62 (45%), Positives = 40/62 (64%)
Query: 166 KYKVPDDLVVESGKLKKLDEILPDLKKNGHRVLIFSQFIFVLDILGHYMDIRGWRHLRLD 225
K + L+ SGKL LD++L L++ G+RVLIFSQ + +LDIL Y+ R + RLD
Sbjct: 451 KQEALQHLIRSSGKLILLDKLLIRLRERGNRVLIFSQMVRMLDILAEYLKYRQFPFQRLD 510
Query: 226 GA 227
G+
Sbjct: 511 GS 512
Score = 105 (42.0 bits), Expect = 4.9e-11, Sum P(2) = 4.9e-11
Identities = 25/75 (33%), Positives = 43/75 (57%)
Query: 33 ISPFMLRRLKKDVLTELPKKTALVIKVPMIPSQAEKYRGLM-EDFKKTANPEGSNRSNEI 91
+ PF+LRR+KKDV LP K ++++ M Q + Y+ ++ ++K A +GS S
Sbjct: 365 LEPFLLRRVKKDVEKSLPAKVEQILRMEMSALQKQYYKWILTRNYK--ALSKGSKGSTS- 421
Query: 92 SHMSMFMMLRKMANH 106
+++ M L+K NH
Sbjct: 422 GFLNIMMELKKCCNH 436
>UNIPROTKB|O14646 [details] [associations]
symbol:CHD1 "Chromodomain-helicase-DNA-binding protein 1"
species:9606 "Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006338 "chromatin remodeling"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0035064 "methylated histone residue
binding" evidence=IDA] [GO:0004003 "ATP-dependent DNA helicase
activity" evidence=TAS] [GO:0006357 "regulation of transcription
from RNA polymerase II promoter" evidence=TAS] [GO:0005515 "protein
binding" evidence=IPI] InterPro:IPR000330 InterPro:IPR000953
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 PROSITE:PS00690
PROSITE:PS50013 PROSITE:PS51194 SMART:SM00298 SMART:SM00490
Pfam:PF00385 GO:GO:0005524 GO:GO:0005634 GO:GO:0005737
GO:GO:0003677 GO:GO:0006357 GO:GO:0006351 GO:GO:0006338
GO:GO:0004003 GO:GO:0035064 InterPro:IPR016197 SUPFAM:SSF54160
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
InterPro:IPR023780 InterPro:IPR023779 PROSITE:PS00598
HOVERGEN:HBG005325 InterPro:IPR025260 Pfam:PF13907 CTD:1105
KO:K11367 EMBL:AF006513 EMBL:AC022121 EMBL:BC117134 IPI:IPI00297851
IPI:IPI00954192 RefSeq:NP_001261.2 UniGene:Hs.643465 PDB:2B2T
PDB:2B2U PDB:2B2V PDB:2B2W PDB:2B2Y PDB:4B4C PDBsum:2B2T
PDBsum:2B2U PDBsum:2B2V PDBsum:2B2W PDBsum:2B2Y PDBsum:4B4C
ProteinModelPortal:O14646 SMR:O14646 IntAct:O14646 STRING:O14646
PhosphoSite:O14646 PaxDb:O14646 PRIDE:O14646
Ensembl:ENST00000284049 GeneID:1105 KEGG:hsa:1105 UCSC:uc003knf.3
GeneCards:GC05M098219 H-InvDB:HIX0005061 HGNC:HGNC:1915
HPA:HPA022236 MIM:602118 neXtProt:NX_O14646 PharmGKB:PA26451
HOGENOM:HOG000207917 InParanoid:O14646 OMA:AETHENE
OrthoDB:EOG4PG601 PhylomeDB:O14646 DrugBank:DB00445
EvolutionaryTrace:O14646 GenomeRNAi:1105 NextBio:4580
ArrayExpress:O14646 Bgee:O14646 CleanEx:HS_CHD1
Genevestigator:O14646 GermOnline:ENSG00000153922 Uniprot:O14646
Length = 1710
Score = 124 (48.7 bits), Expect = 5.6e-11, Sum P(2) = 5.6e-11
Identities = 28/62 (45%), Positives = 40/62 (64%)
Query: 166 KYKVPDDLVVESGKLKKLDEILPDLKKNGHRVLIFSQFIFVLDILGHYMDIRGWRHLRLD 225
K + L+ SGKL LD++L L++ G+RVLIFSQ + +LDIL Y+ R + RLD
Sbjct: 776 KQEALQHLIRSSGKLILLDKLLIRLRERGNRVLIFSQMVRMLDILAEYLKYRQFPFQRLD 835
Query: 226 GA 227
G+
Sbjct: 836 GS 837
Score = 106 (42.4 bits), Expect = 5.6e-11, Sum P(2) = 5.6e-11
Identities = 29/102 (28%), Positives = 51/102 (50%)
Query: 6 EDDARYEDKRKEQATFEVEQVDQAKRIISPFMLRRLKKDVLTELPKKTALVIKVPMIPSQ 65
E + +ED +E + + PF+LRR+KKDV LP K ++++ M Q
Sbjct: 663 EKFSSWEDFEEEHGKGREYGYASLHKELEPFLLRRVKKDVEKSLPAKVEQILRMEMSALQ 722
Query: 66 AEKYRGLM-EDFKKTANPEGSNRSNEISHMSMFMMLRKMANH 106
+ Y+ ++ ++K A +GS S +++ M L+K NH
Sbjct: 723 KQYYKWILTRNYK--ALSKGSKGSTS-GFLNIMMELKKCCNH 761
>MGI|MGI:88393 [details] [associations]
symbol:Chd1 "chromodomain helicase DNA binding protein 1"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003682 "chromatin
binding" evidence=NAS] [GO:0004386 "helicase activity"
evidence=NAS] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
"nucleus" evidence=NAS] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0006333 "chromatin assembly or disassembly" evidence=NAS]
[GO:0006338 "chromatin remodeling" evidence=IGI] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0016568 "chromatin modification" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0035064 "methylated histone
residue binding" evidence=ISO] InterPro:IPR000330
InterPro:IPR000953 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS00690 PROSITE:PS50013 PROSITE:PS51194 SMART:SM00298
SMART:SM00490 MGI:MGI:88393 Pfam:PF00385 GO:GO:0005524
GO:GO:0005634 GO:GO:0005737 GO:GO:0006355 GO:GO:0003677
GO:GO:0006351 GO:GO:0003682 GO:GO:0006338 GO:GO:0006333
GO:GO:0004386 InterPro:IPR016197 SUPFAM:SSF54160 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 InterPro:IPR023780
InterPro:IPR023779 PROSITE:PS00598 HOVERGEN:HBG005325
InterPro:IPR025260 Pfam:PF13907 CTD:1105
GeneTree:ENSGT00560000076896 KO:K11367 HOGENOM:HOG000207917
OMA:AETHENE OrthoDB:EOG4PG601 EMBL:L10410 EMBL:CH466630
EMBL:BC115822 IPI:IPI00107999 PIR:A47392 RefSeq:NP_031716.2
UniGene:Mm.8137 ProteinModelPortal:P40201 SMR:P40201 IntAct:P40201
STRING:P40201 PhosphoSite:P40201 PaxDb:P40201 PRIDE:P40201
Ensembl:ENSMUST00000024627 GeneID:12648 KEGG:mmu:12648
InParanoid:Q14BJ0 NextBio:281852 Bgee:P40201 CleanEx:MM_CHD1
Genevestigator:P40201 GermOnline:ENSMUSG00000023852 Uniprot:P40201
Length = 1711
Score = 124 (48.7 bits), Expect = 5.6e-11, Sum P(2) = 5.6e-11
Identities = 28/62 (45%), Positives = 40/62 (64%)
Query: 166 KYKVPDDLVVESGKLKKLDEILPDLKKNGHRVLIFSQFIFVLDILGHYMDIRGWRHLRLD 225
K + L+ SGKL LD++L L++ G+RVLIFSQ + +LDIL Y+ R + RLD
Sbjct: 774 KQEALQHLIRSSGKLILLDKLLIRLRERGNRVLIFSQMVRMLDILAEYLKYRQFPFQRLD 833
Query: 226 GA 227
G+
Sbjct: 834 GS 835
Score = 106 (42.4 bits), Expect = 5.6e-11, Sum P(2) = 5.6e-11
Identities = 29/102 (28%), Positives = 51/102 (50%)
Query: 6 EDDARYEDKRKEQATFEVEQVDQAKRIISPFMLRRLKKDVLTELPKKTALVIKVPMIPSQ 65
E + +ED +E + + PF+LRR+KKDV LP K ++++ M Q
Sbjct: 661 EKFSSWEDFEEEHGKGREYGYASLHKELEPFLLRRVKKDVEKSLPAKVEQILRMEMSALQ 720
Query: 66 AEKYRGLM-EDFKKTANPEGSNRSNEISHMSMFMMLRKMANH 106
+ Y+ ++ ++K A +GS S +++ M L+K NH
Sbjct: 721 KQYYKWILTRNYK--ALSKGSKGSTS-GFLNIMMELKKCCNH 759
Score = 49 (22.3 bits), Expect = 4.0e-05, Sum P(2) = 4.0e-05
Identities = 17/47 (36%), Positives = 25/47 (53%)
Query: 3 SDSEDDARYE-DKR--KEQATFEVE-QVDQAKRIISPFMLRRLKKDV 45
S+ EDD Y+ DKR + QAT V + D+ + S +L +DV
Sbjct: 215 SEDEDDEDYDNDKRSSRRQATVNVSYKEDEEMKTDSDDLLEVCGEDV 261
Score = 36 (17.7 bits), Expect = 0.00085, Sum P(2) = 0.00085
Identities = 12/52 (23%), Positives = 27/52 (51%)
Query: 2 DSDSEDDARYEDKRKEQATFEVEQVDQAKRI-ISPFMLRRLKKDVLTELPKK 52
DS S+ ++ + R+ + + +VD A+ SP +L + +L + P++
Sbjct: 57 DSGSQSESESDTSRENKVQAKPPKVDGAEFWKSSPSILAVQRSAMLRKQPQQ 108
>UNIPROTKB|E2QUI5 [details] [associations]
symbol:CHD1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005634 "nucleus" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS50013 PROSITE:PS51194
SMART:SM00298 SMART:SM00490 Pfam:PF00385 GO:GO:0005524
GO:GO:0005634 GO:GO:0003677 GO:GO:0004386 InterPro:IPR016197
SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
InterPro:IPR023780 InterPro:IPR023779 PROSITE:PS00598
InterPro:IPR025260 Pfam:PF13907 CTD:1105
GeneTree:ENSGT00560000076896 KO:K11367 EMBL:AAEX03002026
RefSeq:XP_848459.1 Ensembl:ENSCAFT00000012332 GeneID:488891
KEGG:cfa:488891 NextBio:20862162 Uniprot:E2QUI5
Length = 1711
Score = 124 (48.7 bits), Expect = 5.6e-11, Sum P(2) = 5.6e-11
Identities = 28/62 (45%), Positives = 40/62 (64%)
Query: 166 KYKVPDDLVVESGKLKKLDEILPDLKKNGHRVLIFSQFIFVLDILGHYMDIRGWRHLRLD 225
K + L+ SGKL LD++L L++ G+RVLIFSQ + +LDIL Y+ R + RLD
Sbjct: 775 KQEALQHLIRSSGKLILLDKLLIRLRERGNRVLIFSQMVRMLDILAEYLKYRQFPFQRLD 834
Query: 226 GA 227
G+
Sbjct: 835 GS 836
Score = 106 (42.4 bits), Expect = 5.6e-11, Sum P(2) = 5.6e-11
Identities = 29/102 (28%), Positives = 51/102 (50%)
Query: 6 EDDARYEDKRKEQATFEVEQVDQAKRIISPFMLRRLKKDVLTELPKKTALVIKVPMIPSQ 65
E + +ED +E + + PF+LRR+KKDV LP K ++++ M Q
Sbjct: 662 EKFSSWEDFEEEHGKGREYGYASLHKELEPFLLRRVKKDVEKSLPAKVEQILRMEMSALQ 721
Query: 66 AEKYRGLM-EDFKKTANPEGSNRSNEISHMSMFMMLRKMANH 106
+ Y+ ++ ++K A +GS S +++ M L+K NH
Sbjct: 722 KQYYKWILTRNYK--ALSKGSKGSTS-GFLNIMMELKKCCNH 760
>UNIPROTKB|B6ZLK2 [details] [associations]
symbol:CHD1 "Chromodomain-helicase-DNA-binding protein 1"
species:9031 "Gallus gallus" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0000775
"chromosome, centromeric region" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] InterPro:IPR000330 InterPro:IPR000953
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 PROSITE:PS50013
PROSITE:PS51194 SMART:SM00298 SMART:SM00490 Pfam:PF00385
GO:GO:0005524 GO:GO:0005634 GO:GO:0000775 GO:GO:0006355
GO:GO:0003677 GO:GO:0006351 GO:GO:0004386 InterPro:IPR016197
SUPFAM:SSF54160 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 InterPro:IPR023780 InterPro:IPR023779
PROSITE:PS00598 EMBL:AB465210 IPI:IPI00573130 UniGene:Gga.4301
UniGene:Gga.8463 STRING:B6ZLK2 HOVERGEN:HBG005325
InterPro:IPR025260 Pfam:PF13907 Uniprot:B6ZLK2
Length = 1719
Score = 124 (48.7 bits), Expect = 5.7e-11, Sum P(2) = 5.7e-11
Identities = 28/62 (45%), Positives = 40/62 (64%)
Query: 166 KYKVPDDLVVESGKLKKLDEILPDLKKNGHRVLIFSQFIFVLDILGHYMDIRGWRHLRLD 225
K + L+ SGKL LD++L L++ G+RVLIFSQ + +LDIL Y+ R + RLD
Sbjct: 772 KQEALQHLIRSSGKLILLDKLLIRLRERGNRVLIFSQMVRMLDILAEYLKYRQFPFQRLD 831
Query: 226 GA 227
G+
Sbjct: 832 GS 833
Score = 106 (42.4 bits), Expect = 5.7e-11, Sum P(2) = 5.7e-11
Identities = 29/102 (28%), Positives = 51/102 (50%)
Query: 6 EDDARYEDKRKEQATFEVEQVDQAKRIISPFMLRRLKKDVLTELPKKTALVIKVPMIPSQ 65
E + +ED +E + + PF+LRR+KKDV LP K ++++ M Q
Sbjct: 659 EKFSSWEDFEEEHGKGREYGYASLHKELEPFLLRRVKKDVEKSLPAKVEQILRMEMSALQ 718
Query: 66 AEKYRGLM-EDFKKTANPEGSNRSNEISHMSMFMMLRKMANH 106
+ Y+ ++ ++K A +GS S +++ M L+K NH
Sbjct: 719 KQYYKWILTRNYK--ALSKGSKGSTS-GFLNIMMELKKCCNH 757
Score = 36 (17.7 bits), Expect = 0.00086, Sum P(2) = 0.00086
Identities = 7/14 (50%), Positives = 10/14 (71%)
Query: 4 DSEDDARYEDKRKE 17
DS DD+ E K+K+
Sbjct: 127 DSADDSSSETKKKK 140
>UNIPROTKB|J9P6Y8 [details] [associations]
symbol:CHD1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005634 "nucleus" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS50013 PROSITE:PS51194
SMART:SM00298 SMART:SM00490 Pfam:PF00385 GO:GO:0005524
GO:GO:0005634 GO:GO:0003677 GO:GO:0004386 InterPro:IPR016197
SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
InterPro:IPR023780 InterPro:IPR023779 PROSITE:PS00598
InterPro:IPR025260 Pfam:PF13907 GeneTree:ENSGT00560000076896
OMA:AETHENE EMBL:AAEX03002026 Ensembl:ENSCAFT00000043995
Uniprot:J9P6Y8
Length = 1782
Score = 124 (48.7 bits), Expect = 6.1e-11, Sum P(2) = 6.1e-11
Identities = 28/62 (45%), Positives = 40/62 (64%)
Query: 166 KYKVPDDLVVESGKLKKLDEILPDLKKNGHRVLIFSQFIFVLDILGHYMDIRGWRHLRLD 225
K + L+ SGKL LD++L L++ G+RVLIFSQ + +LDIL Y+ R + RLD
Sbjct: 758 KQEALQHLIRSSGKLILLDKLLIRLRERGNRVLIFSQMVRMLDILAEYLKYRQFPFQRLD 817
Query: 226 GA 227
G+
Sbjct: 818 GS 819
Score = 106 (42.4 bits), Expect = 6.1e-11, Sum P(2) = 6.1e-11
Identities = 29/102 (28%), Positives = 51/102 (50%)
Query: 6 EDDARYEDKRKEQATFEVEQVDQAKRIISPFMLRRLKKDVLTELPKKTALVIKVPMIPSQ 65
E + +ED +E + + PF+LRR+KKDV LP K ++++ M Q
Sbjct: 645 EKFSSWEDFEEEHGKGREYGYASLHKELEPFLLRRVKKDVEKSLPAKVEQILRMEMSALQ 704
Query: 66 AEKYRGLM-EDFKKTANPEGSNRSNEISHMSMFMMLRKMANH 106
+ Y+ ++ ++K A +GS S +++ M L+K NH
Sbjct: 705 KQYYKWILTRNYK--ALSKGSKGSTS-GFLNIMMELKKCCNH 743
>UNIPROTKB|F1RN66 [details] [associations]
symbol:CHD1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005634 "nucleus" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS50013 PROSITE:PS51194
SMART:SM00298 SMART:SM00490 Pfam:PF00385 GO:GO:0005524
GO:GO:0005634 GO:GO:0003677 GO:GO:0004386 InterPro:IPR016197
SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
InterPro:IPR023780 InterPro:IPR023779 PROSITE:PS00598
InterPro:IPR025260 Pfam:PF13907 GeneTree:ENSGT00560000076896
EMBL:CU570924 EMBL:CU928692 Ensembl:ENSSSCT00000015489
Uniprot:F1RN66
Length = 1794
Score = 124 (48.7 bits), Expect = 6.2e-11, Sum P(2) = 6.2e-11
Identities = 28/62 (45%), Positives = 40/62 (64%)
Query: 166 KYKVPDDLVVESGKLKKLDEILPDLKKNGHRVLIFSQFIFVLDILGHYMDIRGWRHLRLD 225
K + L+ SGKL LD++L L++ G+RVLIFSQ + +LDIL Y+ R + RLD
Sbjct: 770 KQEALQHLIRSSGKLILLDKLLIRLRERGNRVLIFSQMVRMLDILAEYLKYRQFPFQRLD 829
Query: 226 GA 227
G+
Sbjct: 830 GS 831
Score = 106 (42.4 bits), Expect = 6.2e-11, Sum P(2) = 6.2e-11
Identities = 29/102 (28%), Positives = 51/102 (50%)
Query: 6 EDDARYEDKRKEQATFEVEQVDQAKRIISPFMLRRLKKDVLTELPKKTALVIKVPMIPSQ 65
E + +ED +E + + PF+LRR+KKDV LP K ++++ M Q
Sbjct: 657 EKFSSWEDFEEEHGKGREYGYASLHKELEPFLLRRVKKDVEKSLPAKVEQILRMEMSALQ 716
Query: 66 AEKYRGLM-EDFKKTANPEGSNRSNEISHMSMFMMLRKMANH 106
+ Y+ ++ ++K A +GS S +++ M L+K NH
Sbjct: 717 KQYYKWILTRNYK--ALSKGSKGSTS-GFLNIMMELKKCCNH 755
>UNIPROTKB|I3L6N4 [details] [associations]
symbol:CHD1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005634 "nucleus" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS50013 PROSITE:PS51194
SMART:SM00298 SMART:SM00490 Pfam:PF00385 GO:GO:0005524
GO:GO:0005634 GO:GO:0003677 GO:GO:0004386 InterPro:IPR016197
SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
InterPro:IPR023780 InterPro:IPR023779 PROSITE:PS00598
InterPro:IPR025260 Pfam:PF13907 GeneTree:ENSGT00560000076896
EMBL:CU570924 EMBL:CU928692 Ensembl:ENSSSCT00000022643
Uniprot:I3L6N4
Length = 1798
Score = 124 (48.7 bits), Expect = 6.2e-11, Sum P(2) = 6.2e-11
Identities = 28/62 (45%), Positives = 40/62 (64%)
Query: 166 KYKVPDDLVVESGKLKKLDEILPDLKKNGHRVLIFSQFIFVLDILGHYMDIRGWRHLRLD 225
K + L+ SGKL LD++L L++ G+RVLIFSQ + +LDIL Y+ R + RLD
Sbjct: 770 KQEALQHLIRSSGKLILLDKLLIRLRERGNRVLIFSQMVRMLDILAEYLKYRQFPFQRLD 829
Query: 226 GA 227
G+
Sbjct: 830 GS 831
Score = 106 (42.4 bits), Expect = 6.2e-11, Sum P(2) = 6.2e-11
Identities = 29/102 (28%), Positives = 51/102 (50%)
Query: 6 EDDARYEDKRKEQATFEVEQVDQAKRIISPFMLRRLKKDVLTELPKKTALVIKVPMIPSQ 65
E + +ED +E + + PF+LRR+KKDV LP K ++++ M Q
Sbjct: 657 EKFSSWEDFEEEHGKGREYGYASLHKELEPFLLRRVKKDVEKSLPAKVEQILRMEMSALQ 716
Query: 66 AEKYRGLM-EDFKKTANPEGSNRSNEISHMSMFMMLRKMANH 106
+ Y+ ++ ++K A +GS S +++ M L+K NH
Sbjct: 717 KQYYKWILTRNYK--ALSKGSKGSTS-GFLNIMMELKKCCNH 755
>UNIPROTKB|I3LIS2 [details] [associations]
symbol:CHD1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0035064 "methylated histone residue binding"
evidence=IEA] [GO:0006338 "chromatin remodeling" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] InterPro:IPR000330
InterPro:IPR000953 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS50013 PROSITE:PS51194 SMART:SM00298 SMART:SM00490
Pfam:PF00385 GO:GO:0005524 GO:GO:0005634 GO:GO:0003677
GO:GO:0006338 GO:GO:0004386 InterPro:IPR016197 SUPFAM:SSF54160
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 InterPro:IPR023780
InterPro:IPR023779 PROSITE:PS00598 InterPro:IPR025260 Pfam:PF13907
GeneTree:ENSGT00560000076896 OMA:AETHENE EMBL:CU570924
EMBL:CU928692 Ensembl:ENSSSCT00000032432 Uniprot:I3LIS2
Length = 1799
Score = 124 (48.7 bits), Expect = 6.2e-11, Sum P(2) = 6.2e-11
Identities = 28/62 (45%), Positives = 40/62 (64%)
Query: 166 KYKVPDDLVVESGKLKKLDEILPDLKKNGHRVLIFSQFIFVLDILGHYMDIRGWRHLRLD 225
K + L+ SGKL LD++L L++ G+RVLIFSQ + +LDIL Y+ R + RLD
Sbjct: 771 KQEALQHLIRSSGKLILLDKLLIRLRERGNRVLIFSQMVRMLDILAEYLKYRQFPFQRLD 830
Query: 226 GA 227
G+
Sbjct: 831 GS 832
Score = 106 (42.4 bits), Expect = 6.2e-11, Sum P(2) = 6.2e-11
Identities = 29/102 (28%), Positives = 51/102 (50%)
Query: 6 EDDARYEDKRKEQATFEVEQVDQAKRIISPFMLRRLKKDVLTELPKKTALVIKVPMIPSQ 65
E + +ED +E + + PF+LRR+KKDV LP K ++++ M Q
Sbjct: 658 EKFSSWEDFEEEHGKGREYGYASLHKELEPFLLRRVKKDVEKSLPAKVEQILRMEMSALQ 717
Query: 66 AEKYRGLM-EDFKKTANPEGSNRSNEISHMSMFMMLRKMANH 106
+ Y+ ++ ++K A +GS S +++ M L+K NH
Sbjct: 718 KQYYKWILTRNYK--ALSKGSKGSTS-GFLNIMMELKKCCNH 756
>UNIPROTKB|F1NP27 [details] [associations]
symbol:CHD1 "Chromodomain-helicase-DNA-binding protein 1"
species:9031 "Gallus gallus" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] InterPro:IPR000330 InterPro:IPR000953
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 PROSITE:PS50013
PROSITE:PS51194 SMART:SM00298 SMART:SM00490 Pfam:PF00385
GO:GO:0005524 GO:GO:0005634 GO:GO:0003677 GO:GO:0004386
InterPro:IPR016197 SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 InterPro:IPR023780 InterPro:IPR023779
PROSITE:PS00598 InterPro:IPR025260 Pfam:PF13907
GeneTree:ENSGT00560000076896 EMBL:AADN02065411 EMBL:AADN02065412
EMBL:AADN02065413 IPI:IPI00591777 Ensembl:ENSGALT00000024661
ArrayExpress:F1NP27 Uniprot:F1NP27
Length = 1803
Score = 124 (48.7 bits), Expect = 6.3e-11, Sum P(2) = 6.3e-11
Identities = 28/62 (45%), Positives = 40/62 (64%)
Query: 166 KYKVPDDLVVESGKLKKLDEILPDLKKNGHRVLIFSQFIFVLDILGHYMDIRGWRHLRLD 225
K + L+ SGKL LD++L L++ G+RVLIFSQ + +LDIL Y+ R + RLD
Sbjct: 768 KQEALQHLIRSSGKLILLDKLLIRLRERGNRVLIFSQMVRMLDILAEYLKYRQFPFQRLD 827
Query: 226 GA 227
G+
Sbjct: 828 GS 829
Score = 106 (42.4 bits), Expect = 6.3e-11, Sum P(2) = 6.3e-11
Identities = 29/102 (28%), Positives = 51/102 (50%)
Query: 6 EDDARYEDKRKEQATFEVEQVDQAKRIISPFMLRRLKKDVLTELPKKTALVIKVPMIPSQ 65
E + +ED +E + + PF+LRR+KKDV LP K ++++ M Q
Sbjct: 655 EKFSSWEDFEEEHGKGREYGYASLHKELEPFLLRRVKKDVEKSLPAKVEQILRMEMSALQ 714
Query: 66 AEKYRGLM-EDFKKTANPEGSNRSNEISHMSMFMMLRKMANH 106
+ Y+ ++ ++K A +GS S +++ M L+K NH
Sbjct: 715 KQYYKWILTRNYK--ALSKGSKGSTS-GFLNIMMELKKCCNH 753
Score = 36 (17.7 bits), Expect = 0.00095, Sum P(2) = 0.00095
Identities = 7/14 (50%), Positives = 10/14 (71%)
Query: 4 DSEDDARYEDKRKE 17
DS DD+ E K+K+
Sbjct: 128 DSADDSSSETKKKK 141
>UNIPROTKB|F1N8K8 [details] [associations]
symbol:CHD1 "Chromodomain-helicase-DNA-binding protein 1"
species:9031 "Gallus gallus" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] InterPro:IPR000330 InterPro:IPR000953
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 PROSITE:PS50013
PROSITE:PS51194 SMART:SM00298 SMART:SM00490 Pfam:PF00385
GO:GO:0005524 GO:GO:0005634 GO:GO:0003677 GO:GO:0004386
InterPro:IPR016197 SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 InterPro:IPR023780 InterPro:IPR023779
PROSITE:PS00598 InterPro:IPR025260 Pfam:PF13907
GeneTree:ENSGT00560000076896 OMA:AETHENE EMBL:AADN02065411
EMBL:AADN02065412 EMBL:AADN02065413 IPI:IPI00588290
Ensembl:ENSGALT00000023601 ArrayExpress:F1N8K8 Uniprot:F1N8K8
Length = 1804
Score = 124 (48.7 bits), Expect = 6.3e-11, Sum P(2) = 6.3e-11
Identities = 28/62 (45%), Positives = 40/62 (64%)
Query: 166 KYKVPDDLVVESGKLKKLDEILPDLKKNGHRVLIFSQFIFVLDILGHYMDIRGWRHLRLD 225
K + L+ SGKL LD++L L++ G+RVLIFSQ + +LDIL Y+ R + RLD
Sbjct: 768 KQEALQHLIRSSGKLILLDKLLIRLRERGNRVLIFSQMVRMLDILAEYLKYRQFPFQRLD 827
Query: 226 GA 227
G+
Sbjct: 828 GS 829
Score = 106 (42.4 bits), Expect = 6.3e-11, Sum P(2) = 6.3e-11
Identities = 29/102 (28%), Positives = 51/102 (50%)
Query: 6 EDDARYEDKRKEQATFEVEQVDQAKRIISPFMLRRLKKDVLTELPKKTALVIKVPMIPSQ 65
E + +ED +E + + PF+LRR+KKDV LP K ++++ M Q
Sbjct: 655 EKFSSWEDFEEEHGKGREYGYASLHKELEPFLLRRVKKDVEKSLPAKVEQILRMEMSALQ 714
Query: 66 AEKYRGLM-EDFKKTANPEGSNRSNEISHMSMFMMLRKMANH 106
+ Y+ ++ ++K A +GS S +++ M L+K NH
Sbjct: 715 KQYYKWILTRNYK--ALSKGSKGSTS-GFLNIMMELKKCCNH 753
Score = 36 (17.7 bits), Expect = 0.00095, Sum P(2) = 0.00095
Identities = 7/14 (50%), Positives = 10/14 (71%)
Query: 4 DSEDDARYEDKRKE 17
DS DD+ E K+K+
Sbjct: 128 DSADDSSSETKKKK 141
>UNIPROTKB|F1MGF2 [details] [associations]
symbol:CHD1 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0035064 "methylated histone residue binding"
evidence=IEA] [GO:0006338 "chromatin remodeling" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] InterPro:IPR000330
InterPro:IPR000953 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS50013 PROSITE:PS51194 SMART:SM00298 SMART:SM00490
Pfam:PF00385 GO:GO:0005524 GO:GO:0005634 GO:GO:0003677
GO:GO:0006338 GO:GO:0004386 InterPro:IPR016197 SUPFAM:SSF54160
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 InterPro:IPR023780
InterPro:IPR023779 PROSITE:PS00598 InterPro:IPR025260 Pfam:PF13907
GeneTree:ENSGT00560000076896 OMA:AETHENE EMBL:DAAA02021391
EMBL:DAAA02021392 IPI:IPI00717393 UniGene:Bt.105262
Ensembl:ENSBTAT00000034967 NextBio:20866990 Uniprot:F1MGF2
Length = 1810
Score = 124 (48.7 bits), Expect = 6.3e-11, Sum P(2) = 6.3e-11
Identities = 28/62 (45%), Positives = 40/62 (64%)
Query: 166 KYKVPDDLVVESGKLKKLDEILPDLKKNGHRVLIFSQFIFVLDILGHYMDIRGWRHLRLD 225
K + L+ SGKL LD++L L++ G+RVLIFSQ + +LDIL Y+ R + RLD
Sbjct: 788 KQEALQHLIRSSGKLILLDKLLIRLRERGNRVLIFSQMVRMLDILAEYLKYRQFPFQRLD 847
Query: 226 GA 227
G+
Sbjct: 848 GS 849
Score = 106 (42.4 bits), Expect = 6.3e-11, Sum P(2) = 6.3e-11
Identities = 29/102 (28%), Positives = 51/102 (50%)
Query: 6 EDDARYEDKRKEQATFEVEQVDQAKRIISPFMLRRLKKDVLTELPKKTALVIKVPMIPSQ 65
E + +ED +E + + PF+LRR+KKDV LP K ++++ M Q
Sbjct: 675 EKFSSWEDFEEEHGKGREYGYASLHKELEPFLLRRVKKDVEKSLPAKVEQILRMEMSALQ 734
Query: 66 AEKYRGLM-EDFKKTANPEGSNRSNEISHMSMFMMLRKMANH 106
+ Y+ ++ ++K A +GS S +++ M L+K NH
Sbjct: 735 KQYYKWILTRNYK--ALSKGSKGSTS-GFLNIMMELKKCCNH 773
WARNING: HSPs involving 85 database sequences were not reported due to the
limiting value of parameter B = 250.
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.319 0.136 0.395 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 233 233 0.00086 113 3 11 22 0.41 33
32 0.43 36
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 335
No. of states in DFA: 594 (63 KB)
Total size of DFA: 180 KB (2105 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 23.63u 0.09s 23.72t Elapsed: 00:00:01
Total cpu time: 23.67u 0.10s 23.77t Elapsed: 00:00:01
Start: Thu Aug 15 13:55:00 2013 End: Thu Aug 15 13:55:01 2013
WARNINGS ISSUED: 2