RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy2047
(233 letters)
>d1z3ix1 c.37.1.19 (X:390-735) Rad54-like, Rad54L {Zebra fish (Danio
rerio) [TaxId: 7955]}
Length = 346
Score = 61.1 bits (147), Expect = 1e-11
Identities = 41/193 (21%), Positives = 67/193 (34%), Gaps = 39/193 (20%)
Query: 43 KDVLT-ELPKKTALVIKVPMIPSQAEKYRGLMEDFKKTANPEGSNRSNEISHMSMFMMLR 101
D+L+ LP K V+ + P Q E Y+ ++ K + + S +S +S L+
Sbjct: 2 SDILSKYLPVKIEQVVCCNLTPLQKELYKLFLKQAKPVESLQTGKIS--VSSLSSITSLK 59
Query: 102 KMANHPLGLRYYFQENTLREIADCLVEDPTYKGTNPQYILEDISWLSDYDIHQLSLKHKT 161
K+ NHP L+ + G D
Sbjct: 60 KLCNHPA-----------------LIYEKCLTGEEGFDGALD------------------ 84
Query: 162 LDCAKYKVPDDLVVESGKLKKLDEILPDLK-KNGHRVLIFSQFIFVLDILGHYMDIRGWR 220
L Y SGK+ LD IL + +V++ S + LD+ R +
Sbjct: 85 LFPQNYSTKAVEPQLSGKMLVLDYILAMTRTTTSDKVVLVSNYTQTLDLFEKLCRNRRYL 144
Query: 221 HLRLDGATQVSSR 233
++RLDG + R
Sbjct: 145 YVRLDGTMSIKKR 157
>d1wp9a2 c.37.1.19 (A:201-486) putative ATP-dependent RNA helicase
PF2015 {Pyrococcus furiosus [TaxId: 2261]}
Length = 286
Score = 43.7 bits (102), Expect = 6e-06
Identities = 27/209 (12%), Positives = 61/209 (29%), Gaps = 23/209 (11%)
Query: 27 DQAKRIISPFMLRRLKKDVLTELPKKTALVIKVPMIPSQAEKYRGLMEDFKKTANPEGSN 86
+ K + LR + +D L L + L P IP + + + + +
Sbjct: 13 EIYKEVRKL--LREMLRDALKPLAETGLLESSSPDIPKK--EVLRAGQIINEEMAKGNHD 68
Query: 87 RSNEISHMSMFMMLRKMANHPLGLRYYFQENTLREIADCLVEDPTYKGTNPQYILEDISW 146
+ + +M + L L I E + I D
Sbjct: 69 LRGLLLYHAMALKLHHAIEL---LETQGLSALRAYIKKLYEEAKAGSTKASKEIFSDKRM 125
Query: 147 LSDYDIHQLSLKHKTLDCAKYKVPDDLVVESGKLKKLDEILPDL--KKNGHRVLIFSQFI 204
++ ++ K+ KL EI+ + +K ++++F+ +
Sbjct: 126 KKAIS--------------LLVQAKEIGLDHPKMDKLKEIIREQLQRKQNSKIIVFTNYR 171
Query: 205 FVLDILGHYMDIRGWRHLRLDGATQVSSR 233
+ + + G + R G +
Sbjct: 172 ETAKKIVNELVKDGIKAKRFVGQASKEND 200
>d1z63a1 c.37.1.19 (A:432-661) Helicase of the SNF2/Rad54 hamily
{Sulfolobus solfataricus [TaxId: 2287]}
Length = 230
Score = 38.8 bits (89), Expect = 2e-04
Identities = 17/52 (32%), Positives = 29/52 (55%), Gaps = 5/52 (9%)
Query: 1 MDSDSEDDARYEDKRKEQATFEVEQVDQAKRIISPFMLRRLKKD--VLTELP 50
+ S SE +++ K+ + ++ K IISPF+LRR K D ++ +LP
Sbjct: 182 LGSYSEFKSKFATPIKKG---DNMAKEELKAIISPFILRRTKYDKAIINDLP 230
>d1z5za1 c.37.1.19 (A:663-906) Helicase of the SNF2/Rad54 hamily
{Sulfolobus solfataricus [TaxId: 2287]}
Length = 244
Score = 33.9 bits (76), Expect = 0.012
Identities = 15/109 (13%), Positives = 37/109 (33%), Gaps = 1/109 (0%)
Query: 52 KTALVIKVPMIPSQAEKYRGLMEDFKKTANPEGSNRSNEISHMSMFMMLRKMANHPLGLR 111
K + + P QA Y+ +E+ + + + +S + L+++ +HP L+
Sbjct: 1 KIETNVYCNLTPEQAAMYKAEVENLFNNID-SVTGIKRKGMILSTLLKLKQIVDHPALLK 59
Query: 112 YYFQENTLREIADCLVEDPTYKGTNPQYILEDISWLSDYDIHQLSLKHK 160
Q +E I ++ I + ++ +
Sbjct: 60 GGEQSVRRSGKMIRTMEIIEEALDEGDKIAIFTQFVDMGKIIRNIIEKE 108
>d1z3ix2 c.37.1.19 (X:92-389) Rad54-like, Rad54L {Zebra fish (Danio
rerio) [TaxId: 7955]}
Length = 298
Score = 30.5 bits (67), Expect = 0.14
Identities = 5/32 (15%), Positives = 14/32 (43%)
Query: 9 ARYEDKRKEQATFEVEQVDQAKRIISPFMLRR 40
R D + +++ + I++ ++RR
Sbjct: 267 GRDADASDKDRAAGEQKLQELISIVNRCLIRR 298
>d1w79a1 e.3.1.3 (A:1-467) D-alanyl-D-alanine carboxypeptidase Dac
{Actinomadura sp. [TaxId: 1989]}
Length = 467
Score = 30.3 bits (67), Expect = 0.20
Identities = 5/33 (15%), Positives = 15/33 (45%)
Query: 81 NPEGSNRSNEISHMSMFMMLRKMANHPLGLRYY 113
+ G +R N ++ ++ +L + + P +
Sbjct: 345 DGSGLSRGNLVTADTVVDLLGQAGSAPWAQTWS 377
>d1nm2a2 d.58.23.1 (A:134-195) Probable ACP-binding domain of
malonyl-CoA ACP transacylase {Streptomyces coelicolor
A3(2) [TaxId: 100226]}
Length = 62
Score = 26.7 bits (59), Expect = 0.60
Identities = 9/51 (17%), Positives = 21/51 (41%), Gaps = 1/51 (1%)
Query: 148 SDYDIHQLSLKHKTLDCAKYKVPDDLVVESGKLKKLDEILPDLKKNGHRVL 198
D ++ L+ L A +V +G +++L + D + +V+
Sbjct: 10 GDPEVSVAHLERLGLTPANVNGAGQIVA-AGTMEQLAALNEDKPEGVRKVV 59
>d1czan3 c.55.1.3 (N:466-670) Mammalian type I hexokinase {Human
(Homo sapiens) [TaxId: 9606]}
Length = 205
Score = 27.2 bits (60), Expect = 1.6
Identities = 29/153 (18%), Positives = 53/153 (34%), Gaps = 17/153 (11%)
Query: 25 QVDQAKRIISPFML---------RRLKKDVLTELPKKTALVIKVPMIPSQAEKYRGLMED 75
Q Q + ++ F L +R++ ++ L K+T V M+PS + E+
Sbjct: 1 QHRQIEETLAHFHLTKDMLLEVKKRMRAEMELGLRKQTHNNAVVKMLPSFVRRTPDGTEN 60
Query: 76 FKKTA-NPEGSN-RSNEI----SHMSMFMMLRKMANHPLGLRYYFQENTLREIADCLVED 129
A + G+N R + M K+ P+ + E I C+ +
Sbjct: 61 GDFLALDLGGTNFRVLLVKIRSGKKRTVEMHNKIYAIPIEIMQGTGEELFDHIVSCISDF 120
Query: 130 PTYKGTNPQYILEDISWLSDYDIHQLSLKHKTL 162
Y G + ++ + Q SL L
Sbjct: 121 LDYMGIKGPRMPLGFTFS--FPCQQTSLDAGIL 151
>d1czan1 c.55.1.3 (N:16-222) Mammalian type I hexokinase {Human
(Homo sapiens) [TaxId: 9606]}
Length = 207
Score = 26.7 bits (59), Expect = 2.3
Identities = 21/154 (13%), Positives = 49/154 (31%), Gaps = 17/154 (11%)
Query: 24 EQVDQAKRIISPFML---------RRLKKDVLTELPKKTALVIKVPMIPSQAEKYRGLME 74
+QV + + + L R +K++ L + V M+P+ E
Sbjct: 2 DQVKKIDKYLYAMRLSDETLIDIMTRFRKEMKNGLSRDFNPTATVKMLPTFVRSIPDGSE 61
Query: 75 DFKKTA-NPEGSN-RSNEIS----HMSMFMMLRKMANHPLGLRYYFQENTLREIADCLVE 128
A + GS+ R + M ++ + P + + +A+CL +
Sbjct: 62 KGDFIALDLGGSSFRILRVQVNHEKNQNVHMESEVYDTPENIVHGSGSQLFDHVAECLGD 121
Query: 129 DPTYKGTNPQYILEDISWLSDYDIHQLSLKHKTL 162
+ + + ++ + Q + L
Sbjct: 122 FMEKRKIKDKKLPVGFTFS--FPCQQSKIDEAIL 153
>d1se8a_ b.40.4.3 (A:) ssDNA-binding protein {Deinococcus
radiodurans [TaxId: 1299]}
Length = 231
Score = 26.1 bits (57), Expect = 3.5
Identities = 13/107 (12%), Positives = 26/107 (24%), Gaps = 10/107 (9%)
Query: 75 DFKKTANPEGSNRSNEISHMSMFMMLRKMANHPLGLRYYFQENTLREIADCLVEDPTYKG 134
+ + M+ ++L + P +RY + +
Sbjct: 108 GTQPELIQDAGGGVRMSGAMNEVLVLGNVTRDPE-IRY-TPAGD--AVLSLSI------A 157
Query: 135 TNPQYILEDISWLSDYDIHQLSLKHKTLDCAKYKVPDDLVVESGKLK 181
N Y +L + K D V+ G+L
Sbjct: 158 VNENYQDRQGQRQEKVHYIDATLWRDLAENMKELRKGDPVMIMGRLV 204
>d1fota_ d.144.1.7 (A:) cAMP-dependent PK, catalytic subunit
{Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 316
Score = 25.8 bits (56), Expect = 4.8
Identities = 12/69 (17%), Positives = 25/69 (36%), Gaps = 3/69 (4%)
Query: 93 HMSMFMMLRKMANHPLGLRYYFQENTLREIADCLVEDPTYKGTNPQYILEDI---SWLSD 149
+ K+ N L +F E+ ++ + D + + N Q ED+ W +
Sbjct: 203 DSNTMKTYEKILNAELRFPPFFNEDVKDLLSRLITRDLSQRLGNLQNGTEDVKNHPWFKE 262
Query: 150 YDIHQLSLK 158
+L +
Sbjct: 263 VVWEKLLSR 271
>d1wpxa1 c.69.1.5 (A:1-421) Serine carboxypeptidase II {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 421
Score = 25.5 bits (55), Expect = 5.7
Identities = 14/115 (12%), Positives = 36/115 (31%), Gaps = 4/115 (3%)
Query: 116 ENTLREIADCLVEDPTYKGTNPQYILEDISWLSDYDIHQLSLKHKTLDCAKYKVPDDLVV 175
+ T R + D + P D DY + + + + + + +
Sbjct: 249 QRTGRNVYDIRKDCEGGNLCYPTLQDIDDYLNQDYVKEAVGAEVDHYESCNFDINRNFLF 308
Query: 176 ESGKLKKLDEILPDLKKNGHRVLIFSQFIFVLDILGHYMDIRGW-RHLRLDGATQ 229
+K + DL +L+++ D + +++ + W L +
Sbjct: 309 AGDWMKPYHTAVTDLLNQDLPILVYAGD---KDFICNWLGNKAWTDVLPWKYDEE 360
>d1pn0a3 d.16.1.2 (A:241-341) Phenol hydroxylase {Soil-living
yeast (Trichosporon cutaneum) [TaxId: 5554]}
Length = 101
Score = 24.4 bits (53), Expect = 7.4
Identities = 8/39 (20%), Positives = 16/39 (41%), Gaps = 4/39 (10%)
Query: 1 MDSDSEDDARYEDKRKEQATFEVEQVDQAKRIISPFMLR 39
+ + +E R + + T E + AK+I P+
Sbjct: 52 LQARAEKGGR---VDRTKFTPE-VVIANAKKIFHPYTFD 86
>d1omwa3 d.144.1.7 (A:186-549) G-protein coupled receptor kinase 2
{Cow (Bos taurus) [TaxId: 9913]}
Length = 364
Score = 25.5 bits (55), Expect = 7.5
Identities = 8/78 (10%), Positives = 20/78 (25%), Gaps = 3/78 (3%)
Query: 84 GSNRSNEISHMSMFMMLRKMANHPLGLRYYFQENTLREIADCLVEDPTYKGTNPQYILED 143
G + + + R + L F + L D + ++
Sbjct: 202 GHSPFRQHKTKDKHEIDRMTLTMAVELPDSFSPELRSLLEGLLQRDVNRRLGCLGRGAQE 261
Query: 144 I---SWLSDYDIHQLSLK 158
+ + D + L+
Sbjct: 262 VKESPFFRSLDWQMVFLQ 279
>d1pn0a1 c.3.1.2 (A:1-240,A:342-461) Phenol hydroxylase {Soil-living
yeast (Trichosporon cutaneum) [TaxId: 5554]}
Length = 360
Score = 25.1 bits (53), Expect = 8.3
Identities = 8/50 (16%), Positives = 20/50 (40%)
Query: 9 ARYEDKRKEQATFEVEQVDQAKRIISPFMLRRLKKDVLTELPKKTALVIK 58
YE++R+ A ++ Q R+ S + + ++ + +K
Sbjct: 297 KTYEEERQPFAQALIDFDHQFSRLFSGRPAKDVADEMGVSMDVFKEAFVK 346
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.319 0.136 0.395
Gapped
Lambda K H
0.267 0.0423 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 907,424
Number of extensions: 43985
Number of successful extensions: 143
Number of sequences better than 10.0: 1
Number of HSP's gapped: 141
Number of HSP's successfully gapped: 19
Length of query: 233
Length of database: 2,407,596
Length adjustment: 82
Effective length of query: 151
Effective length of database: 1,281,736
Effective search space: 193542136
Effective search space used: 193542136
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (24.2 bits)