Query psy205
Match_columns 108
No_of_seqs 122 out of 1201
Neff 4.0
Searched_HMMs 29240
Date Fri Aug 16 22:57:49 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy205.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/205hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2a65_A Leutaa, Na(+):neurotran 99.8 6.8E-21 2.3E-25 161.1 -3.7 45 63-107 4-48 (519)
2 3u85_B Histone-lysine N-methyl 21.0 23 0.0008 18.1 0.2 9 87-95 2-10 (21)
3 3g1j_A Integron cassette prote 9.6 1E+02 0.0035 20.9 1.0 13 79-91 31-43 (93)
4 3epu_A STM2138 virulence chape 9.2 2.4E+02 0.0081 20.5 2.9 32 68-104 2-33 (144)
5 2d99_A Muscle, general transcr 9.0 98 0.0033 20.8 0.7 25 5-29 44-68 (90)
6 1q60_A General transcription f 8.9 1E+02 0.0034 21.1 0.7 25 5-29 44-68 (99)
7 2ls2_A High affinity copper up 11.6 75 0.0026 16.6 0.0 12 69-80 3-14 (26)
8 2dn4_A General transcription f 8.5 1.1E+02 0.0036 21.0 0.7 26 4-29 43-68 (99)
9 2eje_A General transcription f 8.1 1.3E+02 0.0043 21.1 1.0 25 5-29 58-82 (114)
10 4g9s_A Lysozyme G, goose-type 7.8 2E+02 0.0067 20.5 2.0 27 64-90 133-159 (187)
No 1
>2a65_A Leutaa, Na(+):neurotransmitter symporter (SNF family); membrane protein, transport protein; HET: BOG; 1.65A {Aquifex aeolicus} SCOP: f.54.1.1 PDB: 2q6h_A* 2q72_A* 2qb4_A* 2qei_A* 3f3a_A* 3f3c_A* 3f3d_A* 3f3e_A* 3f48_A* 3f4i_A* 3f4j_A* 3usg_A* 3usi_A 3usj_A 3usk_A 3usl_A* 3usm_A* 3uso_A 3usp_A* 3qs5_A* ...
Probab=99.77 E-value=6.8e-21 Score=161.14 Aligned_cols=45 Identities=40% Similarity=0.742 Sum_probs=43.1
Q ss_pred cCCCCCchHHHHHHHhhhhccCCceeecceeeeeeCCeeEEEeec
Q psy205 63 ERGSWGSRWEFLLSCVGLSVGIGNVWRFPYLAYQNGGGFLMRKQQ 107 (108)
Q Consensus 63 ~R~~Wssk~~fiLa~iG~aVGLGNiWRFPyL~~~nGGgaFlIPY~ 107 (108)
+|++|+||++|||||+|+||||||||||||+|++||||||||||-
T Consensus 4 ~R~~W~sr~~FiLa~~G~AVGLGNiWRFPyl~~~nGGgAFlipYl 48 (519)
T 2a65_A 4 KREHWATRLGLILAMAGNAVGLGNFLRFPVQAAENGGGAFMIPYI 48 (519)
T ss_dssp -CCCCSCHHHHHHHHHHHHSSHHHHTHHHHHHHHTTTHHHHHHHH
T ss_pred ccccCCcHHHHHHHHHHHHhcccHHHHHHHHHHHcCCcHHHHHHH
Confidence 599999999999999999999999999999999999999999993
No 2
>3u85_B Histone-lysine N-methyltransferase MLL; menin, MEN1, JUND, ledgf, TPR, transcription, epigeneti cancer; 3.00A {Homo sapiens}
Probab=20.97 E-value=23 Score=18.09 Aligned_cols=9 Identities=44% Similarity=0.866 Sum_probs=6.5
Q ss_pred eeecceeee
Q psy205 87 VWRFPYLAY 95 (108)
Q Consensus 87 iWRFPyL~~ 95 (108)
-||||---.
T Consensus 2 rwrfparpg 10 (21)
T 3u85_B 2 RWRFPARPG 10 (26)
T ss_pred ccccccCCC
Confidence 499996644
No 3
>3g1j_A Integron cassette protein; novel, oyster POND, woodshole, USA, structural genomics, unknown function PSI-2, protein structure initiative; 1.70A {Vibrio cholerae}
Probab=9.61 E-value=1e+02 Score=20.90 Aligned_cols=13 Identities=31% Similarity=0.524 Sum_probs=10.1
Q ss_pred hhhccCCceeecc
Q psy205 79 GLSVGIGNVWRFP 91 (108)
Q Consensus 79 G~aVGLGNiWRFP 91 (108)
|+....|-+|+|-
T Consensus 31 Gft~~~GE~w~fa 43 (93)
T 3g1j_A 31 NINYERGDVMRFL 43 (93)
T ss_dssp CCEECTTCEEEEE
T ss_pred CcEeCCCCEEEEe
Confidence 5567788899886
No 4
>3epu_A STM2138 virulence chaperone; TYPEIII secretion system, SRCA (SSRB-regulated chaperone A); 2.50A {Salmonella typhimurium} SCOP: d.198.1.0
Probab=9.19 E-value=2.4e+02 Score=20.46 Aligned_cols=32 Identities=19% Similarity=0.046 Sum_probs=25.1
Q ss_pred CchHHHHHHHhhhhccCCceeecceeeeeeCCeeEEE
Q psy205 68 GSRWEFLLSCVGLSVGIGNVWRFPYLAYQNGGGFLMR 104 (108)
Q Consensus 68 ssk~~fiLa~iG~aVGLGNiWRFPyL~~~nGGgaFlI 104 (108)
+||.+.+|+-.|..+|+.++- --++|-+.|+|
T Consensus 2 ~~~ae~LL~~fgeklGLpsLv-----FDe~g~Csl~i 33 (144)
T 3epu_A 2 YSRADRLLRQFSLKLNTDSIV-----FDENRLCSFII 33 (144)
T ss_dssp CCHHHHHHHHHHHHTTCSCCC-----CCTTSEEEEEE
T ss_pred ccHHHHHHHHHHHHcCCCceE-----ECCCCceeeee
Confidence 589999999999999998763 34667677665
No 5
>2d99_A Muscle, general transcription factor II-I repeat domain- containing protein 1; structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=9.04 E-value=98 Score=20.84 Aligned_cols=25 Identities=24% Similarity=0.328 Sum_probs=20.3
Q ss_pred cccCCCCCCcccccCCccCCccccc
Q psy205 5 FSSSGVPRGGSLRERTYSGDKQERA 29 (108)
Q Consensus 5 ~~~~~~~~~~~~r~~~y~~~~~~~~ 29 (108)
+...|-|.|-.+|++++-+-...+.
T Consensus 44 l~V~GLPeGi~fr~P~~yg~~~L~~ 68 (90)
T 2d99_A 44 LAVQGLPEGLAFRRPAEYDPKALMA 68 (90)
T ss_dssp EEEESCCSSCCSCCTTTSCHHHHHH
T ss_pred EEeecCCCCCccCCccccCHHHHHH
Confidence 3468999999999999987777544
No 6
>1q60_A General transcription factor II-I; TFII-I, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.288.1.1
Probab=8.89 E-value=1e+02 Score=21.13 Aligned_cols=25 Identities=24% Similarity=0.379 Sum_probs=21.1
Q ss_pred cccCCCCCCcccccCCccCCccccc
Q psy205 5 FSSSGVPRGGSLRERTYSGDKQERA 29 (108)
Q Consensus 5 ~~~~~~~~~~~~r~~~y~~~~~~~~ 29 (108)
+.++|-|.|-.+|++++-+-.+.+.
T Consensus 44 v~V~GLP~gi~FR~P~~ygi~~Le~ 68 (99)
T 1q60_A 44 FYVEGLPEGVPFRRPSTFGIPRLEK 68 (99)
T ss_dssp EEEESCCTTCCSCCTTTSCHHHHHH
T ss_pred EEeecCCCCccccCCCcccHHHHHH
Confidence 5678999999999999988777544
No 7
>2ls2_A High affinity copper uptake protein 1; HCTR1 TMDS, oligomerization, metal transport; NMR {Homo sapiens}
Probab=11.59 E-value=75 Score=16.56 Aligned_cols=12 Identities=17% Similarity=0.072 Sum_probs=8.8
Q ss_pred chHHHHHHHhhh
Q psy205 69 SRWEFLLSCVGL 80 (108)
Q Consensus 69 sk~~fiLa~iG~ 80 (108)
+..+|+++|++.
T Consensus 3 s~~~~v~Sci~i 14 (26)
T 2ls2_A 3 TAGEMAGAFVAV 14 (26)
Confidence 567788888773
No 8
>2dn4_A General transcription factor II-I; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=8.47 E-value=1.1e+02 Score=20.98 Aligned_cols=26 Identities=19% Similarity=0.236 Sum_probs=21.5
Q ss_pred ccccCCCCCCcccccCCccCCccccc
Q psy205 4 FFSSSGVPRGGSLRERTYSGDKQERA 29 (108)
Q Consensus 4 ~~~~~~~~~~~~~r~~~y~~~~~~~~ 29 (108)
.+.++|-|.|-.+|++++-+-.+.+.
T Consensus 43 ~v~V~GLP~gi~FR~P~~ygi~~Le~ 68 (99)
T 2dn4_A 43 DLYVEGLPEGIPFRRPSTYGIPRLER 68 (99)
T ss_dssp TEEEESCCTTCCSSCTTTSCHHHHHH
T ss_pred eEEeecCCCCccccCCCcccHHHHHH
Confidence 35689999999999999988777544
No 9
>2eje_A General transcription factor II-I; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=8.09 E-value=1.3e+02 Score=21.15 Aligned_cols=25 Identities=24% Similarity=0.372 Sum_probs=20.4
Q ss_pred cccCCCCCCcccccCCccCCccccc
Q psy205 5 FSSSGVPRGGSLRERTYSGDKQERA 29 (108)
Q Consensus 5 ~~~~~~~~~~~~r~~~y~~~~~~~~ 29 (108)
+..+|-|.|-.||++++-+-.+.+.
T Consensus 58 v~V~GLPeGi~fr~P~~ygi~~L~~ 82 (114)
T 2eje_A 58 VVVDGMPPGVSFKAPSYLEISSMRR 82 (114)
T ss_dssp EEEECCCTTCCCCCTTTSCHHHHHH
T ss_pred EEeecCCCCCccCCCCcccHHHHHH
Confidence 3568999999999999988777444
No 10
>4g9s_A Lysozyme G, goose-type lysozyme; hydrolase inhibitor, hydrolase-hydrolase inhibitor; HET: FLC; 0.95A {Salmo salar} PDB: 3mgw_A
Probab=7.80 E-value=2e+02 Score=20.54 Aligned_cols=27 Identities=15% Similarity=0.196 Sum_probs=21.9
Q ss_pred CCCCCchHHHHHHHhhhhccCCceeec
Q psy205 64 RGSWGSRWEFLLSCVGLSVGIGNVWRF 90 (108)
Q Consensus 64 R~~Wssk~~fiLa~iG~aVGLGNiWRF 90 (108)
.+.|...-...+++.+|..|.|||=++
T Consensus 133 ~~~~~~~g~~~~alAAYNaG~g~V~~~ 159 (187)
T 4g9s_A 133 FPVWPKEHQLKGGISAYNAGDKNVRTY 159 (187)
T ss_dssp STTSCHHHHHHHHHHHHHHCGGGCCSS
T ss_pred cCCCCcCccHHHHHHHHccCchhHHhc
Confidence 466776677889999999999999654
Done!