RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy205
         (108 letters)



>d2a65a1 f.54.1.1 (A:5-513) Na(+):neurotransmitter symporter
           homologue LeuT {Aquifex aeolicus [TaxId: 63363]}
          Length = 509

 Score = 79.9 bits (196), Expect = 1e-19
 Identities = 18/41 (43%), Positives = 26/41 (63%), Gaps = 1/41 (2%)

Query: 64  RGSWGSRWEFLLSCVGLSVGIGNVWRFPYLAYQNGGG-FLM 103
           R  W +R   +L+  G +VG+GN  RFP  A +NGGG F++
Sbjct: 1   REHWATRLGLILAMAGNAVGLGNFLRFPVQAAENGGGAFMI 41


>d1rw6a_ a.47.4.1 (A:) CAPPD, an extracellular domain of amyloid
           beta A4 protein {Human (Homo sapiens) [TaxId: 9606]}
          Length = 192

 Score = 24.0 bits (52), Expect = 4.6
 Identities = 6/30 (20%), Positives = 10/30 (33%)

Query: 27  ERAHHRRFSAHIVARRESTFTSIDAAIRRP 56
              H  R  A +  RR     +   A++  
Sbjct: 81  VETHMARVEAMLNDRRRLALENYITALQAV 110


>d1v93a_ c.1.23.1 (A:) Methylenetetrahydrofolate reductase
          {Thermus thermophilus [TaxId: 274]}
          Length = 292

 Score = 23.6 bits (50), Expect = 6.3
 Identities = 7/29 (24%), Positives = 14/29 (48%)

Query: 13 GGSLRERTYSGDKQERAHHRRFSAHIVAR 41
           GS RER+ +  ++ ++      AH+   
Sbjct: 53 MGSTRERSVAWAQRIQSLGLNPLAHLTVA 81


>d1t3qa1 a.56.1.1 (A:88-168) Quinoline 2-oxidoreductase small
          subunit QorS, C-domain {Pseudomonas putida [TaxId:
          303]}
          Length = 81

 Score = 23.0 bits (49), Expect = 6.9
 Identities = 9/24 (37%), Positives = 14/24 (58%)

Query: 42 RESTFTSIDAAIRRPSLAAVAERG 65
          R + + +I  AI  P++A  A RG
Sbjct: 56 RCTGYETIIDAITDPAVAEAARRG 79


>d1yc5a1 c.31.1.5 (A:1-245) NAD-dependent deacetylase NpdA
           {Thermotoga maritima [TaxId: 2336]}
          Length = 245

 Score = 23.2 bits (49), Expect = 8.9
 Identities = 7/33 (21%), Positives = 14/33 (42%)

Query: 67  WGSRWEFLLSCVGLSVGIGNVWRFPYLAYQNGG 99
             S    L+  +G S+ +      P +  ++GG
Sbjct: 176 GLSSRASLMIVLGSSLVVYPAAELPLITVRSGG 208


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.323    0.135    0.423 

Gapped
Lambda     K      H
   0.267   0.0599    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 418,245
Number of extensions: 16500
Number of successful extensions: 47
Number of sequences better than 10.0: 1
Number of HSP's gapped: 47
Number of HSP's successfully gapped: 9
Length of query: 108
Length of database: 2,407,596
Length adjustment: 68
Effective length of query: 40
Effective length of database: 1,473,956
Effective search space: 58958240
Effective search space used: 58958240
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 47 (22.2 bits)