BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy2050
(131 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9VL72|SMRCD_DROME SWI/SNF-related matrix-associated actin-dependent regulator of
chromatin subfamily A containing DEAD/H box 1 homolog
OS=Drosophila melanogaster GN=Etl1 PE=1 SV=1
Length = 844
Score = 105 bits (263), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 52/82 (63%), Positives = 65/82 (79%), Gaps = 3/82 (3%)
Query: 4 ELKARNLKLAGYQLVGLNWLAVMHNQQLCGILADEMGLGKTIQVISFLAYLHEAGLSRPK 63
+L + L+LA YQ++GLNWL VMH Q++ GILADEMGLGKTIQVI+FLAYL E GLS +
Sbjct: 281 KLLSSGLQLADYQIIGLNWLTVMHKQEMNGILADEMGLGKTIQVIAFLAYLKENGLS--Q 338
Query: 64 SPHLIIVPSSTLCKYKVP-SRW 84
+ HLI+VPSSTL ++ SRW
Sbjct: 339 AAHLIVVPSSTLDNWEAEISRW 360
>sp|B0R061|SMRDA_DANRE SWI/SNF-related matrix-associated actin-dependent regulator of
chromatin subfamily A containing DEAD/H box 1A OS=Danio
rerio GN=smarcad1a PE=2 SV=1
Length = 972
Score = 95.1 bits (235), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 45/67 (67%), Positives = 53/67 (79%), Gaps = 3/67 (4%)
Query: 9 NLKLAGYQLVGLNWLAVMHNQQLCGILADEMGLGKTIQVISFLAYLHEAGLSRPKSPHLI 68
NLKL YQL+GL WL ++H +L GILADEMGLGKTIQ I+FLA+L+E G+ K PHLI
Sbjct: 445 NLKLQAYQLIGLKWLILLHQHKLSGILADEMGLGKTIQAIAFLAHLYEKGI---KGPHLI 501
Query: 69 IVPSSTL 75
VPSSTL
Sbjct: 502 TVPSSTL 508
>sp|E1B7X9|SMRCD_BOVIN SWI/SNF-related matrix-associated actin-dependent regulator of
chromatin subfamily A containing DEAD/H box 1 OS=Bos
taurus GN=SMARCAD1 PE=3 SV=2
Length = 1028
Score = 89.0 bits (219), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 43/68 (63%), Positives = 53/68 (77%), Gaps = 3/68 (4%)
Query: 8 RNLKLAGYQLVGLNWLAVMHNQQLCGILADEMGLGKTIQVISFLAYLHEAGLSRPKSPHL 67
++L L YQ VGLNWLA++H L GILADEMGLGKTIQ I+FLAYL++ G K PHL
Sbjct: 495 QSLSLKPYQKVGLNWLALVHKHGLNGILADEMGLGKTIQAIAFLAYLYQEG---NKGPHL 551
Query: 68 IIVPSSTL 75
I+VP+ST+
Sbjct: 552 IVVPASTI 559
>sp|E7F1C4|SMRDB_DANRE SWI/SNF-related matrix-associated actin-dependent regulator of
chromatin subfamily A containing DEAD/H box 1B OS=Danio
rerio GN=smarcad1b PE=3 SV=1
Length = 954
Score = 88.6 bits (218), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 42/72 (58%), Positives = 53/72 (73%), Gaps = 3/72 (4%)
Query: 4 ELKARNLKLAGYQLVGLNWLAVMHNQQLCGILADEMGLGKTIQVISFLAYLHEAGLSRPK 63
E+ + +L YQL+GLNWL ++H +L GILADEMGLGKTIQ ISFLA+L++ G
Sbjct: 421 EILSSTFQLKPYQLIGLNWLVLLHQNKLSGILADEMGLGKTIQAISFLAHLYQEG---NH 477
Query: 64 SPHLIIVPSSTL 75
PHLI VP+STL
Sbjct: 478 GPHLITVPASTL 489
>sp|D3Z9Z9|SMRCD_RAT SWI/SNF-related matrix-associated actin-dependent regulator of
chromatin subfamily A containing DEAD/H box 1 OS=Rattus
norvegicus GN=Smarcad1 PE=3 SV=1
Length = 1024
Score = 88.2 bits (217), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 43/68 (63%), Positives = 52/68 (76%), Gaps = 3/68 (4%)
Query: 8 RNLKLAGYQLVGLNWLAVMHNQQLCGILADEMGLGKTIQVISFLAYLHEAGLSRPKSPHL 67
++L L YQ VGLNWLA++H L GILADEMGLGKTIQ I+FLAYL + G K PHL
Sbjct: 491 QSLSLKPYQKVGLNWLALVHKHGLNGILADEMGLGKTIQAIAFLAYLFQEG---NKGPHL 547
Query: 68 IIVPSSTL 75
I+VP+ST+
Sbjct: 548 IVVPASTI 555
>sp|Q04692|SMRCD_MOUSE SWI/SNF-related matrix-associated actin-dependent regulator of
chromatin subfamily A containing DEAD/H box 1 OS=Mus
musculus GN=Smarcad1 PE=1 SV=2
Length = 1021
Score = 88.2 bits (217), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 43/68 (63%), Positives = 52/68 (76%), Gaps = 3/68 (4%)
Query: 8 RNLKLAGYQLVGLNWLAVMHNQQLCGILADEMGLGKTIQVISFLAYLHEAGLSRPKSPHL 67
++L L YQ VGLNWLA++H L GILADEMGLGKTIQ I+FLAYL + G K PHL
Sbjct: 488 QSLSLKPYQKVGLNWLALVHKHGLNGILADEMGLGKTIQAIAFLAYLFQEG---NKGPHL 544
Query: 68 IIVPSSTL 75
I+VP+ST+
Sbjct: 545 IVVPASTI 552
>sp|Q9H4L7|SMRCD_HUMAN SWI/SNF-related matrix-associated actin-dependent regulator of
chromatin subfamily A containing DEAD/H box 1 OS=Homo
sapiens GN=SMARCAD1 PE=1 SV=2
Length = 1026
Score = 87.0 bits (214), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 42/68 (61%), Positives = 52/68 (76%), Gaps = 3/68 (4%)
Query: 8 RNLKLAGYQLVGLNWLAVMHNQQLCGILADEMGLGKTIQVISFLAYLHEAGLSRPKSPHL 67
++L L YQ VGLNWLA++H L GILADEMGLGKTIQ I+FLAYL++ G PHL
Sbjct: 493 QSLSLKPYQKVGLNWLALVHKHGLNGILADEMGLGKTIQAIAFLAYLYQEG---NNGPHL 549
Query: 68 IIVPSSTL 75
I+VP+ST+
Sbjct: 550 IVVPASTI 557
>sp|P87114|FFT1_SCHPO ATP-dependent helicase fft1 OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=fft1 PE=3 SV=1
Length = 944
Score = 86.3 bits (212), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 42/69 (60%), Positives = 52/69 (75%), Gaps = 3/69 (4%)
Query: 7 ARNLKLAGYQLVGLNWLAVMHNQQLCGILADEMGLGKTIQVISFLAYLHEAGLSRPKSPH 66
A + L YQ+VGLNWL +M+ +L GILADEMGLGKT QVISFLA L E G+ ++ H
Sbjct: 409 ASGITLKSYQIVGLNWLCLMYKAKLSGILADEMGLGKTCQVISFLASLKEKGI---QNRH 465
Query: 67 LIIVPSSTL 75
L++VPSSTL
Sbjct: 466 LVVVPSSTL 474
>sp|O74842|FFT2_SCHPO ATP-dependent helicase fft2 OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=fft2 PE=1 SV=1
Length = 1284
Score = 84.3 bits (207), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 40/69 (57%), Positives = 52/69 (75%), Gaps = 3/69 (4%)
Query: 7 ARNLKLAGYQLVGLNWLAVMHNQQLCGILADEMGLGKTIQVISFLAYLHEAGLSRPKSPH 66
A +++L YQLVG+NWL +++ Q+L GILADEMGLGKT QV++F A L E G PH
Sbjct: 545 ASDVQLKSYQLVGVNWLHLLYQQKLSGILADEMGLGKTCQVVAFFALLLEQGH---HGPH 601
Query: 67 LIIVPSSTL 75
L++VPSSTL
Sbjct: 602 LVVVPSSTL 610
>sp|Q5FWR0|SMRCD_XENTR SWI/SNF-related matrix-associated actin-dependent regulator of
chromatin subfamily A containing DEAD/H box 1 OS=Xenopus
tropicalis GN=smarcad1 PE=2 SV=1
Length = 1003
Score = 81.6 bits (200), Expect = 1e-15, Method: Composition-based stats.
Identities = 38/71 (53%), Positives = 53/71 (74%), Gaps = 3/71 (4%)
Query: 5 LKARNLKLAGYQLVGLNWLAVMHNQQLCGILADEMGLGKTIQVISFLAYLHEAGLSRPKS 64
+ + NL L YQ +GLNWLA++H ++ ILADEMGLGKT+Q I+FLA+L+ G S
Sbjct: 467 IMSENLVLKPYQKIGLNWLALLHKHKVNMILADEMGLGKTVQAIAFLAHLYVTGDS---G 523
Query: 65 PHLIIVPSSTL 75
PHL++VP+ST+
Sbjct: 524 PHLVVVPASTM 534
>sp|G5EDG2|SMRCD_CAEEL SWI/SNF-related matrix-associated actin-dependent regulator of
chromatin subfamily A containing DEAD/H box 1 homolog
OS=Caenorhabditis elegans GN=M03C11.8 PE=3 SV=1
Length = 989
Score = 80.9 bits (198), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 36/64 (56%), Positives = 49/64 (76%), Gaps = 3/64 (4%)
Query: 12 LAGYQLVGLNWLAVMHNQQLCGILADEMGLGKTIQVISFLAYLHEAGLSRPKSPHLIIVP 71
L YQL+G+ WL +M+N+ L IL DEMGLGKTIQ+++FL+YL + G + PHLI+VP
Sbjct: 394 LHDYQLIGVKWLIMMYNKDLNAILGDEMGLGKTIQIVAFLSYLKQIGKT---GPHLIVVP 450
Query: 72 SSTL 75
SST+
Sbjct: 451 SSTI 454
>sp|Q08773|ISW2_YEAST ISWI chromatin-remodeling complex ATPase ISW2 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=ISW2 PE=1
SV=1
Length = 1120
Score = 78.2 bits (191), Expect = 1e-14, Method: Composition-based stats.
Identities = 39/69 (56%), Positives = 48/69 (69%), Gaps = 2/69 (2%)
Query: 11 KLAGYQLVGLNWLAVMHNQQLCGILADEMGLGKTIQVISFLAYLHEAGLSRPKSPHLIIV 70
KL YQ+ GLNWL +H +L GILADEMGLGKT+Q ISFL YL + + + P LIIV
Sbjct: 183 KLRDYQVQGLNWLISLHENKLSGILADEMGLGKTLQTISFLGYLRY--VKQIEGPFLIIV 240
Query: 71 PSSTLCKYK 79
P STL ++
Sbjct: 241 PKSTLDNWR 249
>sp|Q6EVK6|BRM_ARATH ATP-dependent helicase BRM OS=Arabidopsis thaliana GN=BRM PE=1 SV=1
Length = 2193
Score = 77.0 bits (188), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 37/68 (54%), Positives = 48/68 (70%), Gaps = 2/68 (2%)
Query: 12 LAGYQLVGLNWLAVMHNQQLCGILADEMGLGKTIQVISFLAYLHEAGLSRPKSPHLIIVP 71
L YQLVGL W+ ++N +L GILADEMGLGKT+QV++ +AYL E PHLIIVP
Sbjct: 981 LRDYQLVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLME--FKGNYGPHLIIVP 1038
Query: 72 SSTLCKYK 79
++ L +K
Sbjct: 1039 NAVLVNWK 1046
>sp|Q8RWY3|ISW2_ARATH Putative chromatin-remodeling complex ATPase chain OS=Arabidopsis
thaliana GN=At3g06400 PE=2 SV=3
Length = 1055
Score = 76.6 bits (187), Expect = 4e-14, Method: Composition-based stats.
Identities = 37/66 (56%), Positives = 47/66 (71%), Gaps = 4/66 (6%)
Query: 11 KLAGYQLVGLNWLAVMHNQQLCGILADEMGLGKTIQVISFLAYLHE-AGLSRPKSPHLII 69
K+ YQL GLNWL ++ + GILADEMGLGKT+Q IS LAYLHE G++ PH+++
Sbjct: 188 KMRDYQLAGLNWLIRLYENGINGILADEMGLGKTLQTISLLAYLHEYRGIN---GPHMVV 244
Query: 70 VPSSTL 75
P STL
Sbjct: 245 APKSTL 250
>sp|Q7G8Y3|ISW2_ORYSJ Probable chromatin-remodeling complex ATPase chain OS=Oryza sativa
subsp. japonica GN=Os01g0367900 PE=2 SV=2
Length = 1107
Score = 75.5 bits (184), Expect = 8e-14, Method: Composition-based stats.
Identities = 36/66 (54%), Positives = 46/66 (69%), Gaps = 4/66 (6%)
Query: 11 KLAGYQLVGLNWLAVMHNQQLCGILADEMGLGKTIQVISFLAYLHE-AGLSRPKSPHLII 69
K+ YQL GLNWL ++ + GILADEMGLGKT+Q IS L YLHE G++ PH+++
Sbjct: 230 KMRDYQLAGLNWLIRLYENGINGILADEMGLGKTLQTISLLGYLHEFRGIT---GPHMVV 286
Query: 70 VPSSTL 75
P STL
Sbjct: 287 APKSTL 292
>sp|P22082|SNF2_YEAST Transcription regulatory protein SNF2 OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=SNF2 PE=1 SV=1
Length = 1703
Score = 75.1 bits (183), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 36/67 (53%), Positives = 45/67 (67%), Gaps = 2/67 (2%)
Query: 12 LAGYQLVGLNWLAVMHNQQLCGILADEMGLGKTIQVISFLAYLHEAGLSRPKSPHLIIVP 71
L YQ+ GL W+ + N L GILADEMGLGKTIQ IS L YL+E + + P+L+IVP
Sbjct: 767 LKDYQIKGLQWMVSLFNNHLNGILADEMGLGKTIQTISLLTYLYE--MKNIRGPYLVIVP 824
Query: 72 SSTLCKY 78
STL +
Sbjct: 825 LSTLSNW 831
>sp|Q05471|SWR1_YEAST Helicase SWR1 OS=Saccharomyces cerevisiae (strain ATCC 204508 /
S288c) GN=SWR1 PE=1 SV=1
Length = 1514
Score = 75.1 bits (183), Expect = 1e-13, Method: Composition-based stats.
Identities = 39/69 (56%), Positives = 46/69 (66%), Gaps = 2/69 (2%)
Query: 12 LAGYQLVGLNWLAVMHNQQLCGILADEMGLGKTIQVISFLAYLHEAGLSRPKSPHLIIVP 71
L YQ GLNWLA ++N GILADEMGLGKTIQ IS LAYL A PHLI+VP
Sbjct: 696 LRTYQKQGLNWLASLYNNHTNGILADEMGLGKTIQTISLLAYL--ACEKENWGPHLIVVP 753
Query: 72 SSTLCKYKV 80
+S L +++
Sbjct: 754 TSVLLNWEM 762
>sp|Q759G7|SWR1_ASHGO Helicase SWR1 OS=Ashbya gossypii (strain ATCC 10895 / CBS 109.51 /
FGSC 9923 / NRRL Y-1056) GN=SWR1 PE=3 SV=2
Length = 1486
Score = 74.7 bits (182), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 39/69 (56%), Positives = 46/69 (66%), Gaps = 2/69 (2%)
Query: 12 LAGYQLVGLNWLAVMHNQQLCGILADEMGLGKTIQVISFLAYLHEAGLSRPKSPHLIIVP 71
L YQ GLNWLA ++N GILADEMGLGKTIQ I+ LAYL A PHLIIVP
Sbjct: 671 LRTYQKQGLNWLASLYNNNTNGILADEMGLGKTIQTIALLAYL--ACEKENWGPHLIIVP 728
Query: 72 SSTLCKYKV 80
+S L +++
Sbjct: 729 TSVLLNWEM 737
>sp|P38144|ISW1_YEAST ISWI chromatin-remodeling complex ATPase ISW1 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=ISW1 PE=1
SV=2
Length = 1129
Score = 74.7 bits (182), Expect = 2e-13, Method: Composition-based stats.
Identities = 37/77 (48%), Positives = 50/77 (64%), Gaps = 3/77 (3%)
Query: 9 NLKLAGYQLVGLNWLAVMHNQQLCGILADEMGLGKTIQVISFLAYLHEAGLSRPKSPHLI 68
N +L YQ+ G+NWL +H ++ GILADEMGLGKT+Q ISFL YL + + P L+
Sbjct: 193 NGQLRPYQIQGVNWLVSLHKNKIAGILADEMGLGKTLQTISFLGYLRY--IEKIPGPFLV 250
Query: 69 IVPSSTLCKY-KVPSRW 84
I P STL + + +RW
Sbjct: 251 IAPKSTLNNWLREINRW 267
>sp|P31380|FUN30_YEAST ATP-dependent helicase FUN30 OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=FUN30 PE=1 SV=1
Length = 1131
Score = 74.3 bits (181), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 35/66 (53%), Positives = 48/66 (72%), Gaps = 3/66 (4%)
Query: 10 LKLAGYQLVGLNWLAVMHNQQLCGILADEMGLGKTIQVISFLAYLHEAGLSRPKSPHLII 69
+ L YQ G+NWL +++ ++ ILAD+MGLGKT QVISF AYL + ++ P PHL++
Sbjct: 570 ISLKDYQQTGINWLNLLYQNKMSCILADDMGLGKTCQVISFFAYLKQ--INEP-GPHLVV 626
Query: 70 VPSSTL 75
VPSSTL
Sbjct: 627 VPSSTL 632
>sp|Q9UTN6|SNF21_SCHPO Chromatin structure-remodeling complex subunit snf21
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=snf21 PE=1 SV=1
Length = 1199
Score = 74.3 bits (181), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 39/75 (52%), Positives = 47/75 (62%), Gaps = 3/75 (4%)
Query: 11 KLAGYQLVGLNWLAVMHNQQLCGILADEMGLGKTIQVISFLAYLHEAGLSRPKSPHLIIV 70
KL YQL GL W+ ++N L GILADEMGLGKTIQ IS + +L E R P L+IV
Sbjct: 416 KLKEYQLRGLQWMISLYNNHLNGILADEMGLGKTIQTISLITHLIEK--KRQNGPFLVIV 473
Query: 71 PSSTLCKYKVP-SRW 84
P STL + + RW
Sbjct: 474 PLSTLTNWTMEFERW 488
>sp|Q6CJ38|SWR1_KLULA Helicase SWR1 OS=Kluyveromyces lactis (strain ATCC 8585 / CBS 2359
/ DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37) GN=SWR1
PE=3 SV=1
Length = 1572
Score = 74.3 bits (181), Expect = 2e-13, Method: Composition-based stats.
Identities = 38/66 (57%), Positives = 46/66 (69%), Gaps = 2/66 (3%)
Query: 15 YQLVGLNWLAVMHNQQLCGILADEMGLGKTIQVISFLAYLHEAGLSRPKSPHLIIVPSST 74
YQ GLNWLA ++N + GILADEMGLGKTIQ IS LAYL A PHLI+VP+S
Sbjct: 768 YQKQGLNWLASLYNNKTNGILADEMGLGKTIQTISLLAYL--ACEKENWGPHLIVVPTSV 825
Query: 75 LCKYKV 80
L +++
Sbjct: 826 LLNWEM 831
>sp|Q9ULG1|INO80_HUMAN DNA helicase INO80 OS=Homo sapiens GN=INO80 PE=1 SV=2
Length = 1556
Score = 74.3 bits (181), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 39/70 (55%), Positives = 48/70 (68%), Gaps = 2/70 (2%)
Query: 9 NLKLAGYQLVGLNWLAVMHNQQLCGILADEMGLGKTIQVISFLAYLHEAGLSRPKSPHLI 68
N KL GYQL G+NWLA ++ Q + GILADEMGLGKT+Q I+ LA+L E P LI
Sbjct: 515 NGKLKGYQLKGMNWLANLYEQGINGILADEMGLGKTVQSIALLAHLAER--ENIWGPFLI 572
Query: 69 IVPSSTLCKY 78
I P+STL +
Sbjct: 573 ISPASTLNNW 582
>sp|Q6ZPV2|INO80_MOUSE DNA helicase INO80 OS=Mus musculus GN=Ino80 PE=2 SV=2
Length = 1559
Score = 74.3 bits (181), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 39/70 (55%), Positives = 48/70 (68%), Gaps = 2/70 (2%)
Query: 9 NLKLAGYQLVGLNWLAVMHNQQLCGILADEMGLGKTIQVISFLAYLHEAGLSRPKSPHLI 68
N KL GYQL G+NWLA ++ Q + GILADEMGLGKT+Q I+ LA+L E P LI
Sbjct: 517 NGKLKGYQLKGMNWLANLYEQGINGILADEMGLGKTVQSIALLAHLAER--ENIWGPFLI 574
Query: 69 IVPSSTLCKY 78
I P+STL +
Sbjct: 575 ISPASTLNNW 584
>sp|Q59U81|SWR1_CANAL Helicase SWR1 OS=Candida albicans (strain SC5314 / ATCC MYA-2876)
GN=SWR1 PE=3 SV=1
Length = 1641
Score = 74.3 bits (181), Expect = 2e-13, Method: Composition-based stats.
Identities = 40/73 (54%), Positives = 48/73 (65%), Gaps = 10/73 (13%)
Query: 12 LAGYQLVGLNWLAVMHNQQLCGILADEMGLGKTIQVISFLAYL----HEAGLSRPKSPHL 67
L YQ GLNWLA ++N GILADEMGLGKTIQ IS LAYL H+ G PHL
Sbjct: 823 LRPYQKQGLNWLASLYNNNTNGILADEMGLGKTIQTISLLAYLACEHHKWG------PHL 876
Query: 68 IIVPSSTLCKYKV 80
IIVP+S + +++
Sbjct: 877 IIVPTSVMLNWEM 889
>sp|P41877|ISW1_CAEEL Chromatin-remodeling complex ATPase chain isw-1 OS=Caenorhabditis
elegans GN=isw-1 PE=1 SV=2
Length = 1009
Score = 73.9 bits (180), Expect = 2e-13, Method: Composition-based stats.
Identities = 35/67 (52%), Positives = 46/67 (68%), Gaps = 2/67 (2%)
Query: 9 NLKLAGYQLVGLNWLAVMHNQQLCGILADEMGLGKTIQVISFLAYLHEAGLSRPKSPHLI 68
N ++ YQ+ GLNWLA + + ++ GILADEMGLGKT+Q IS + Y+ SPHL+
Sbjct: 129 NGEMRDYQVRGLNWLASLQHNKINGILADEMGLGKTLQTISMIGYMKH--YKNKASPHLV 186
Query: 69 IVPSSTL 75
IVP STL
Sbjct: 187 IVPKSTL 193
>sp|Q6BKC2|SWR1_DEBHA Helicase SWR1 OS=Debaryomyces hansenii (strain ATCC 36239 / CBS 767
/ JCM 1990 / NBRC 0083 / IGC 2968) GN=SWR1 PE=3 SV=2
Length = 1616
Score = 73.9 bits (180), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 38/69 (55%), Positives = 46/69 (66%), Gaps = 2/69 (2%)
Query: 12 LAGYQLVGLNWLAVMHNQQLCGILADEMGLGKTIQVISFLAYLHEAGLSRPKSPHLIIVP 71
L YQ GLNWLA ++N GILADEMGLGKTIQ IS LAYL A PHLI+VP
Sbjct: 781 LRPYQKQGLNWLASLYNNGTNGILADEMGLGKTIQTISLLAYL--AAEHHIWGPHLIVVP 838
Query: 72 SSTLCKYKV 80
+S + +++
Sbjct: 839 TSVMLNWEM 847
>sp|O42861|FFT3_SCHPO ATP-dependent helicase fft3 OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=fft3 PE=1 SV=1
Length = 922
Score = 73.9 bits (180), Expect = 3e-13, Method: Composition-based stats.
Identities = 32/67 (47%), Positives = 49/67 (73%), Gaps = 3/67 (4%)
Query: 9 NLKLAGYQLVGLNWLAVMHNQQLCGILADEMGLGKTIQVISFLAYLHEAGLSRPKSPHLI 68
++KL YQ++G+NWL +++ +L GILADEMGLGKT Q I+F + L + ++ PHL+
Sbjct: 384 DIKLQDYQIIGINWLYLLYELKLAGILADEMGLGKTCQTIAFFSLLMDKNIN---GPHLV 440
Query: 69 IVPSSTL 75
I P+ST+
Sbjct: 441 IAPASTM 447
>sp|O14148|INO80_SCHPO Putative DNA helicase ino80 OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=ino80 PE=1 SV=4
Length = 1604
Score = 73.9 bits (180), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 38/69 (55%), Positives = 47/69 (68%), Gaps = 2/69 (2%)
Query: 11 KLAGYQLVGLNWLAVMHNQQLCGILADEMGLGKTIQVISFLAYLHEAGLSRPKSPHLIIV 70
KL YQL GLNWLA ++ Q + GILADEMGLGKT+Q IS +AYL E P L+I
Sbjct: 841 KLKEYQLKGLNWLANLYEQGINGILADEMGLGKTVQSISVMAYLAET--HNIWGPFLVIA 898
Query: 71 PSSTLCKYK 79
P+STL ++
Sbjct: 899 PASTLHNWQ 907
>sp|Q6FK48|SWR1_CANGA Helicase SWR1 OS=Candida glabrata (strain ATCC 2001 / CBS 138 / JCM
3761 / NBRC 0622 / NRRL Y-65) GN=SWR1 PE=3 SV=1
Length = 1450
Score = 73.2 bits (178), Expect = 4e-13, Method: Composition-based stats.
Identities = 38/69 (55%), Positives = 46/69 (66%), Gaps = 2/69 (2%)
Query: 12 LAGYQLVGLNWLAVMHNQQLCGILADEMGLGKTIQVISFLAYLHEAGLSRPKSPHLIIVP 71
L YQ GLNWLA ++N GILADEMGLGKTIQ IS L+YL A PHLI+VP
Sbjct: 628 LRTYQKQGLNWLASLYNNNTNGILADEMGLGKTIQTISLLSYL--ACEKHNWGPHLIVVP 685
Query: 72 SSTLCKYKV 80
+S L +++
Sbjct: 686 TSVLLNWEM 694
>sp|O94421|SNF22_SCHPO SWI/SNF chromatin-remodeling complex subunit snf22
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=snf22 PE=1 SV=2
Length = 1680
Score = 73.2 bits (178), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 37/67 (55%), Positives = 44/67 (65%), Gaps = 2/67 (2%)
Query: 12 LAGYQLVGLNWLAVMHNQQLCGILADEMGLGKTIQVISFLAYLHEAGLSRPKSPHLIIVP 71
L YQL GL W+ ++N L GILADEMGLGKTIQ I+F+ YL E + P LIIVP
Sbjct: 869 LKDYQLKGLEWMLSLYNNNLNGILADEMGLGKTIQTIAFITYLIEK--KNQQGPFLIIVP 926
Query: 72 SSTLCKY 78
STL +
Sbjct: 927 LSTLTNW 933
>sp|Q6DIC0|SMCA2_MOUSE Probable global transcription activator SNF2L2 OS=Mus musculus
GN=Smarca2 PE=1 SV=1
Length = 1577
Score = 73.2 bits (178), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 44/86 (51%), Positives = 51/86 (59%), Gaps = 9/86 (10%)
Query: 9 NLKLAGYQLVGLNWLAVMHNQQLCGILADEMGLGKTIQVISFLAYLHEAGLSRPKSPHLI 68
N L YQL GL W+ ++N L GILADEMGLGKTIQ I+ + YL E R P+LI
Sbjct: 726 NGTLKHYQLQGLEWMVSLYNNNLNGILADEMGLGKTIQTIALITYLMEH--KRLNGPYLI 783
Query: 69 IVPSSTLCKYKVPSRWRTSNCDKTSP 94
IVP STL S W T DK +P
Sbjct: 784 IVPLSTL------SNW-TYEFDKWAP 802
>sp|P51531|SMCA2_HUMAN Probable global transcription activator SNF2L2 OS=Homo sapiens
GN=SMARCA2 PE=1 SV=2
Length = 1590
Score = 72.8 bits (177), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 44/86 (51%), Positives = 51/86 (59%), Gaps = 9/86 (10%)
Query: 9 NLKLAGYQLVGLNWLAVMHNQQLCGILADEMGLGKTIQVISFLAYLHEAGLSRPKSPHLI 68
N L YQL GL W+ ++N L GILADEMGLGKTIQ I+ + YL E R P+LI
Sbjct: 721 NGTLKHYQLQGLEWMVSLYNNNLNGILADEMGLGKTIQTIALITYLMEH--KRLNGPYLI 778
Query: 69 IVPSSTLCKYKVPSRWRTSNCDKTSP 94
IVP STL S W T DK +P
Sbjct: 779 IVPLSTL------SNW-TYEFDKWAP 797
>sp|Q6ZRS2|SRCAP_HUMAN Helicase SRCAP OS=Homo sapiens GN=SRCAP PE=1 SV=3
Length = 3230
Score = 72.8 bits (177), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 40/76 (52%), Positives = 52/76 (68%), Gaps = 5/76 (6%)
Query: 11 KLAGYQLVGLNWLAVMHNQQLCGILADEMGLGKTIQVISFLAYLH-EAGLSRPKSPHLII 69
+L YQ +GL+WL M+ ++L GILADEMGLGKTIQ IS LA+L E G PHLII
Sbjct: 617 QLREYQHIGLDWLVTMYEKKLNGILADEMGLGKTIQTISLLAHLACEKGN---WGPHLII 673
Query: 70 VPSSTLCKYKVP-SRW 84
VP+S + +++ RW
Sbjct: 674 VPTSVMLNWEMELKRW 689
>sp|P32597|STH1_YEAST Nuclear protein STH1/NPS1 OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=STH1 PE=1 SV=1
Length = 1359
Score = 72.4 bits (176), Expect = 7e-13, Method: Composition-based stats.
Identities = 37/77 (48%), Positives = 49/77 (63%), Gaps = 3/77 (3%)
Query: 12 LAGYQLVGLNWLAVMHNQQLCGILADEMGLGKTIQVISFLAYLHEAGLSRPKSPHLIIVP 71
L YQL GL W+ ++N L GILADEMGLGKTIQ IS + YL+E + + P L+IVP
Sbjct: 470 LKEYQLRGLEWMVSLYNNHLNGILADEMGLGKTIQSISLITYLYE--VKKDIGPFLVIVP 527
Query: 72 SSTLCKYKVP-SRWRTS 87
ST+ + + +W S
Sbjct: 528 LSTITNWTLEFEKWAPS 544
>sp|Q2UTQ9|INO80_ASPOR Putative DNA helicase ino80 OS=Aspergillus oryzae (strain ATCC
42149 / RIB 40) GN=ino80 PE=3 SV=1
Length = 1444
Score = 72.0 bits (175), Expect = 9e-13, Method: Composition-based stats.
Identities = 38/69 (55%), Positives = 47/69 (68%), Gaps = 2/69 (2%)
Query: 11 KLAGYQLVGLNWLAVMHNQQLCGILADEMGLGKTIQVISFLAYLHEAGLSRPKSPHLIIV 70
KL YQL GLNWL ++ Q + GILADEMGLGKTIQ IS +AYL E + P L+I
Sbjct: 632 KLKEYQLKGLNWLVNLYEQGINGILADEMGLGKTIQSISVMAYLAE--VHNIWGPFLVIA 689
Query: 71 PSSTLCKYK 79
P+STL ++
Sbjct: 690 PASTLHNWQ 698
>sp|Q9NDJ2|DOM_DROME Helicase domino OS=Drosophila melanogaster GN=dom PE=1 SV=2
Length = 3198
Score = 71.6 bits (174), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 36/69 (52%), Positives = 48/69 (69%), Gaps = 2/69 (2%)
Query: 12 LAGYQLVGLNWLAVMHNQQLCGILADEMGLGKTIQVISFLAYLHEAGLSRPKSPHLIIVP 71
L YQ +GL+WL M+ ++L GILADEMGLGKTIQ I+ LA+L A PHLI+VP
Sbjct: 914 LREYQHIGLDWLVTMNERKLNGILADEMGLGKTIQTIALLAHL--ACAKGNWGPHLIVVP 971
Query: 72 SSTLCKYKV 80
SS + +++
Sbjct: 972 SSVMLNWEM 980
>sp|Q6CA87|SWR1_YARLI Helicase SWR1 OS=Yarrowia lipolytica (strain CLIB 122 / E 150)
GN=SWR1 PE=3 SV=1
Length = 1772
Score = 71.6 bits (174), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 37/69 (53%), Positives = 46/69 (66%), Gaps = 2/69 (2%)
Query: 12 LAGYQLVGLNWLAVMHNQQLCGILADEMGLGKTIQVISFLAYLHEAGLSRPKSPHLIIVP 71
L YQ +GL WLA ++N GILADEMGLGKTIQ IS L+YL A PHLIIVP
Sbjct: 909 LRAYQQLGLEWLAGLYNNDTNGILADEMGLGKTIQTISLLSYL--ACEHHIWGPHLIIVP 966
Query: 72 SSTLCKYKV 80
+S + +++
Sbjct: 967 TSVMLNWEM 975
>sp|Q9NEL2|SSL1_CAEEL Helicase ssl-1 OS=Caenorhabditis elegans GN=ssl-1 PE=2 SV=4
Length = 2395
Score = 71.2 bits (173), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 35/70 (50%), Positives = 48/70 (68%), Gaps = 2/70 (2%)
Query: 11 KLAGYQLVGLNWLAVMHNQQLCGILADEMGLGKTIQVISFLAYLHEAGLSRPKSPHLIIV 70
+L YQ+VGL+W+ ++ + L GILADEMGLGKTIQ IS LA H A PHLI+V
Sbjct: 557 QLREYQMVGLDWMVTLYEKNLNGILADEMGLGKTIQTISLLA--HMACSESIWGPHLIVV 614
Query: 71 PSSTLCKYKV 80
P+S + +++
Sbjct: 615 PTSVILNWEM 624
>sp|Q4PGL2|INO80_USTMA Putative DNA helicase INO80 OS=Ustilago maydis (strain 521 / FGSC
9021) GN=INO80 PE=3 SV=1
Length = 1910
Score = 71.2 bits (173), Expect = 2e-12, Method: Composition-based stats.
Identities = 38/74 (51%), Positives = 49/74 (66%), Gaps = 2/74 (2%)
Query: 6 KARNLKLAGYQLVGLNWLAVMHNQQLCGILADEMGLGKTIQVISFLAYLHEAGLSRPKSP 65
K +L YQL GLNWLA ++ Q + GILADEMGLGKT+Q IS +AYL E + P
Sbjct: 992 KMLTCQLKEYQLKGLNWLANLYEQGINGILADEMGLGKTVQSISLMAYLAE--VHDIWGP 1049
Query: 66 HLIIVPSSTLCKYK 79
L+I P+STL ++
Sbjct: 1050 FLVIAPASTLHNWQ 1063
>sp|A1C9W6|INO80_ASPCL Putative DNA helicase ino80 OS=Aspergillus clavatus (strain ATCC
1007 / CBS 513.65 / DSM 816 / NCTC 3887 / NRRL 1)
GN=ino80 PE=3 SV=1
Length = 1707
Score = 71.2 bits (173), Expect = 2e-12, Method: Composition-based stats.
Identities = 38/69 (55%), Positives = 47/69 (68%), Gaps = 2/69 (2%)
Query: 11 KLAGYQLVGLNWLAVMHNQQLCGILADEMGLGKTIQVISFLAYLHEAGLSRPKSPHLIIV 70
KL YQL GLNWL ++ Q + GILADEMGLGKTIQ IS +AYL E + P L+I
Sbjct: 834 KLKEYQLKGLNWLVNLYEQGINGILADEMGLGKTIQSISVMAYLAE--VHNIWGPFLVIA 891
Query: 71 PSSTLCKYK 79
P+STL ++
Sbjct: 892 PASTLHNWQ 900
>sp|A1CZE5|INO80_NEOFI Putative DNA helicase ino80 OS=Neosartorya fischeri (strain ATCC
1020 / DSM 3700 / FGSC A1164 / NRRL 181) GN=ino80 PE=3
SV=1
Length = 1708
Score = 70.9 bits (172), Expect = 2e-12, Method: Composition-based stats.
Identities = 38/69 (55%), Positives = 47/69 (68%), Gaps = 2/69 (2%)
Query: 11 KLAGYQLVGLNWLAVMHNQQLCGILADEMGLGKTIQVISFLAYLHEAGLSRPKSPHLIIV 70
KL YQL GLNWL ++ Q + GILADEMGLGKTIQ IS +AYL E + P L+I
Sbjct: 832 KLKEYQLKGLNWLVNLYEQGINGILADEMGLGKTIQSISVMAYLAE--VHNIWGPFLVIA 889
Query: 71 PSSTLCKYK 79
P+STL ++
Sbjct: 890 PASTLHNWQ 898
>sp|Q8K1P7|SMCA4_RAT Transcription activator BRG1 OS=Rattus norvegicus GN=Smarca4 PE=1
SV=1
Length = 1613
Score = 70.9 bits (172), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 37/67 (55%), Positives = 43/67 (64%), Gaps = 2/67 (2%)
Query: 12 LAGYQLVGLNWLAVMHNQQLCGILADEMGLGKTIQVISFLAYLHEAGLSRPKSPHLIIVP 71
L YQ+ GL WL ++N L GILADEMGLGKTIQ I+ + YL E R P LIIVP
Sbjct: 754 LKQYQIKGLEWLVSLYNNNLNGILADEMGLGKTIQTIALITYLMEH--KRINGPFLIIVP 811
Query: 72 SSTLCKY 78
STL +
Sbjct: 812 LSTLSNW 818
>sp|Q3TKT4|SMCA4_MOUSE Transcription activator BRG1 OS=Mus musculus GN=Smarca4 PE=1 SV=1
Length = 1613
Score = 70.9 bits (172), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 37/67 (55%), Positives = 43/67 (64%), Gaps = 2/67 (2%)
Query: 12 LAGYQLVGLNWLAVMHNQQLCGILADEMGLGKTIQVISFLAYLHEAGLSRPKSPHLIIVP 71
L YQ+ GL WL ++N L GILADEMGLGKTIQ I+ + YL E R P LIIVP
Sbjct: 754 LKQYQIKGLEWLVSLYNNNLNGILADEMGLGKTIQTIALITYLMEH--KRINGPFLIIVP 811
Query: 72 SSTLCKY 78
STL +
Sbjct: 812 LSTLSNW 818
>sp|P51532|SMCA4_HUMAN Transcription activator BRG1 OS=Homo sapiens GN=SMARCA4 PE=1 SV=2
Length = 1647
Score = 70.9 bits (172), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 37/67 (55%), Positives = 43/67 (64%), Gaps = 2/67 (2%)
Query: 12 LAGYQLVGLNWLAVMHNQQLCGILADEMGLGKTIQVISFLAYLHEAGLSRPKSPHLIIVP 71
L YQ+ GL WL ++N L GILADEMGLGKTIQ I+ + YL E R P LIIVP
Sbjct: 754 LKQYQIKGLEWLVSLYNNNLNGILADEMGLGKTIQTIALITYLMEH--KRINGPFLIIVP 811
Query: 72 SSTLCKY 78
STL +
Sbjct: 812 LSTLSNW 818
>sp|A7Z019|SMCA4_BOVIN Transcription activator BRG1 OS=Bos taurus GN=SMARCA4 PE=2 SV=1
Length = 1606
Score = 70.9 bits (172), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 37/67 (55%), Positives = 43/67 (64%), Gaps = 2/67 (2%)
Query: 12 LAGYQLVGLNWLAVMHNQQLCGILADEMGLGKTIQVISFLAYLHEAGLSRPKSPHLIIVP 71
L YQ+ GL WL ++N L GILADEMGLGKTIQ I+ + YL E R P LIIVP
Sbjct: 746 LKQYQIKGLEWLVSLYNNNLNGILADEMGLGKTIQTIALITYLMEH--KRINGPFLIIVP 803
Query: 72 SSTLCKY 78
STL +
Sbjct: 804 LSTLSNW 810
>sp|A2R9H9|INO80_ASPNC Putative DNA helicase ino80 OS=Aspergillus niger (strain CBS 513.88
/ FGSC A1513) GN=ino80 PE=3 SV=1
Length = 1697
Score = 70.9 bits (172), Expect = 2e-12, Method: Composition-based stats.
Identities = 38/69 (55%), Positives = 47/69 (68%), Gaps = 2/69 (2%)
Query: 11 KLAGYQLVGLNWLAVMHNQQLCGILADEMGLGKTIQVISFLAYLHEAGLSRPKSPHLIIV 70
KL YQL GLNWL ++ Q + GILADEMGLGKTIQ IS +AYL E + P L+I
Sbjct: 822 KLKEYQLKGLNWLVNLYEQGINGILADEMGLGKTIQSISVMAYLAE--VHNIWGPFLVIA 879
Query: 71 PSSTLCKYK 79
P+STL ++
Sbjct: 880 PASTLHNWQ 888
>sp|Q4WTV7|INO80_ASPFU Putative DNA helicase ino80 OS=Neosartorya fumigata (strain ATCC
MYA-4609 / Af293 / CBS 101355 / FGSC A1100) GN=ino80
PE=3 SV=1
Length = 1708
Score = 70.9 bits (172), Expect = 2e-12, Method: Composition-based stats.
Identities = 38/69 (55%), Positives = 47/69 (68%), Gaps = 2/69 (2%)
Query: 11 KLAGYQLVGLNWLAVMHNQQLCGILADEMGLGKTIQVISFLAYLHEAGLSRPKSPHLIIV 70
KL YQL GLNWL ++ Q + GILADEMGLGKTIQ IS +AYL E + P L+I
Sbjct: 832 KLKEYQLKGLNWLVNLYEQGINGILADEMGLGKTIQSISVMAYLAE--VHNIWGPFLVIA 889
Query: 71 PSSTLCKYK 79
P+STL ++
Sbjct: 890 PASTLHNWQ 898
>sp|Q5BAZ5|INO80_EMENI Putative DNA helicase ino80 OS=Emericella nidulans (strain FGSC A4
/ ATCC 38163 / CBS 112.46 / NRRL 194 / M139) GN=ino80
PE=3 SV=1
Length = 1612
Score = 70.9 bits (172), Expect = 2e-12, Method: Composition-based stats.
Identities = 38/69 (55%), Positives = 47/69 (68%), Gaps = 2/69 (2%)
Query: 11 KLAGYQLVGLNWLAVMHNQQLCGILADEMGLGKTIQVISFLAYLHEAGLSRPKSPHLIIV 70
KL YQL GLNWL ++ Q + GILADEMGLGKTIQ IS +AYL E + P L+I
Sbjct: 797 KLKEYQLKGLNWLVNLYEQGINGILADEMGLGKTIQSISVMAYLAE--VHNIWGPFLVIA 854
Query: 71 PSSTLCKYK 79
P+STL ++
Sbjct: 855 PASTLHNWQ 863
>sp|Q0CA78|INO80_ASPTN Putative DNA helicase ino80 OS=Aspergillus terreus (strain NIH 2624
/ FGSC A1156) GN=ino80 PE=3 SV=1
Length = 1690
Score = 70.5 bits (171), Expect = 3e-12, Method: Composition-based stats.
Identities = 38/69 (55%), Positives = 47/69 (68%), Gaps = 2/69 (2%)
Query: 11 KLAGYQLVGLNWLAVMHNQQLCGILADEMGLGKTIQVISFLAYLHEAGLSRPKSPHLIIV 70
KL YQL GLNWL ++ Q + GILADEMGLGKTIQ IS +AYL E + P L+I
Sbjct: 817 KLKEYQLKGLNWLVNLYEQGINGILADEMGLGKTIQSISVMAYLAE--VHNIWGPFLVIA 874
Query: 71 PSSTLCKYK 79
P+STL ++
Sbjct: 875 PASTLHNWQ 883
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.320 0.135 0.414
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 48,642,099
Number of Sequences: 539616
Number of extensions: 1773383
Number of successful extensions: 3758
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 213
Number of HSP's successfully gapped in prelim test: 94
Number of HSP's that attempted gapping in prelim test: 3456
Number of HSP's gapped (non-prelim): 317
length of query: 131
length of database: 191,569,459
effective HSP length: 97
effective length of query: 34
effective length of database: 139,226,707
effective search space: 4733708038
effective search space used: 4733708038
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)