Query psy2050
Match_columns 131
No_of_seqs 113 out of 1110
Neff 7.9
Searched_HMMs 29240
Date Fri Aug 16 22:59:05 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy2050.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/2050hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3mwy_W Chromo domain-containin 99.9 4.8E-25 1.6E-29 187.1 10.9 120 9-130 234-356 (800)
2 1z63_A Helicase of the SNF2/RA 99.9 5.8E-23 2E-27 164.9 12.2 106 6-129 32-138 (500)
3 1z3i_X Similar to RAD54-like; 99.9 3.8E-22 1.3E-26 166.0 8.8 119 8-129 52-180 (644)
4 3dmq_A RNA polymerase-associat 99.7 4.2E-18 1.4E-22 147.2 9.4 113 4-130 146-259 (968)
5 1wp9_A ATP-dependent RNA helic 99.6 2.9E-16 1E-20 122.7 6.4 102 8-129 6-111 (494)
6 2fwr_A DNA repair protein RAD2 99.5 1E-13 3.6E-18 110.3 9.6 89 8-129 90-181 (472)
7 1rif_A DAR protein, DNA helica 99.4 2.9E-13 9.9E-18 101.6 8.8 99 10-129 112-214 (282)
8 3tbk_A RIG-I helicase domain; 99.4 5.4E-13 1.8E-17 106.8 9.3 106 9-129 2-112 (555)
9 2ykg_A Probable ATP-dependent 99.4 6E-13 2E-17 110.3 9.1 106 10-130 12-122 (696)
10 4a2p_A RIG-I, retinoic acid in 99.4 7.3E-13 2.5E-17 106.3 9.1 107 8-129 4-115 (556)
11 2oca_A DAR protein, ATP-depend 99.4 7.9E-13 2.7E-17 106.1 8.4 100 9-129 111-214 (510)
12 3h1t_A Type I site-specific re 99.4 3.9E-12 1.3E-16 104.1 10.5 81 7-87 174-262 (590)
13 4gl2_A Interferon-induced heli 99.3 4.8E-13 1.6E-17 110.9 4.9 110 6-130 2-117 (699)
14 4a2q_A RIG-I, retinoic acid in 99.3 2.5E-12 8.5E-17 108.9 9.1 106 9-129 246-356 (797)
15 2fz4_A DNA repair protein RAD2 99.3 3.8E-12 1.3E-16 93.9 8.6 89 8-129 90-181 (237)
16 4a2w_A RIG-I, retinoic acid in 99.3 2.2E-12 7.5E-17 111.3 6.6 106 9-129 246-356 (936)
17 2gxq_A Heat resistant RNA depe 99.3 1.8E-11 6E-16 87.1 8.9 105 10-128 22-129 (207)
18 3b6e_A Interferon-induced heli 99.3 6.5E-12 2.2E-16 89.6 6.5 109 7-129 29-142 (216)
19 1xti_A Probable ATP-dependent 99.3 1.4E-11 4.7E-16 94.9 8.7 104 11-129 30-138 (391)
20 1t6n_A Probable ATP-dependent 99.2 4.3E-11 1.5E-15 86.2 9.2 106 8-129 32-144 (220)
21 2z0m_A 337AA long hypothetical 99.2 5E-11 1.7E-15 89.8 9.4 95 11-129 16-115 (337)
22 1s2m_A Putative ATP-dependent 99.2 1.1E-10 3.7E-15 90.3 9.1 103 11-129 43-149 (400)
23 1vec_A ATP-dependent RNA helic 99.1 2.1E-10 7.2E-15 81.5 9.1 103 11-129 25-132 (206)
24 1fuu_A Yeast initiation factor 99.1 7.3E-11 2.5E-15 90.8 7.2 102 10-129 42-148 (394)
25 1hv8_A Putative ATP-dependent 99.1 5.8E-11 2E-15 90.3 6.4 101 11-129 28-133 (367)
26 1qde_A EIF4A, translation init 99.1 1.9E-10 6.6E-15 82.8 8.8 103 10-129 35-141 (224)
27 2j0s_A ATP-dependent RNA helic 99.1 1.6E-10 5.6E-15 89.7 7.6 74 11-90 59-134 (410)
28 3ber_A Probable ATP-dependent 99.1 4E-10 1.4E-14 83.3 9.2 102 11-129 65-171 (249)
29 3pey_A ATP-dependent RNA helic 99.1 2.2E-10 7.6E-15 87.8 8.0 100 10-129 26-131 (395)
30 2oxc_A Probable ATP-dependent 99.1 4.6E-10 1.6E-14 81.6 9.3 102 11-129 46-152 (230)
31 2pl3_A Probable ATP-dependent 99.1 5.4E-10 1.9E-14 81.2 9.4 104 10-129 46-156 (236)
32 1q0u_A Bstdead; DEAD protein, 99.1 2.7E-10 9.3E-15 82.1 7.1 103 10-128 25-135 (219)
33 1wrb_A DJVLGB; RNA helicase, D 99.1 1.1E-09 3.9E-14 80.4 9.9 104 11-129 45-160 (253)
34 3eiq_A Eukaryotic initiation f 99.0 7.8E-10 2.7E-14 85.6 8.9 104 10-129 61-169 (414)
35 3bor_A Human initiation factor 99.0 9.8E-10 3.3E-14 80.3 7.4 71 11-87 52-124 (237)
36 2w00_A HSDR, R.ECOR124I; ATP-b 98.9 3.6E-09 1.2E-13 92.3 9.4 76 9-87 269-356 (1038)
37 3dkp_A Probable ATP-dependent 98.9 3.3E-09 1.1E-13 77.4 7.1 105 11-129 51-159 (245)
38 3fht_A ATP-dependent RNA helic 98.9 6.7E-09 2.3E-13 80.2 8.5 101 10-129 46-153 (412)
39 3oiy_A Reverse gyrase helicase 98.8 1.1E-08 3.8E-13 79.9 8.5 105 9-129 19-127 (414)
40 3iuy_A Probable ATP-dependent 98.8 1.6E-08 5.4E-13 73.1 8.5 103 11-128 42-152 (228)
41 2eyq_A TRCF, transcription-rep 98.8 1E-08 3.5E-13 90.3 7.9 110 8-129 600-716 (1151)
42 3fho_A ATP-dependent RNA helic 98.8 3.1E-09 1.1E-13 85.8 4.2 76 11-92 141-220 (508)
43 2i4i_A ATP-dependent RNA helic 98.8 3.9E-08 1.3E-12 76.2 9.4 105 10-129 36-161 (417)
44 2db3_A ATP-dependent RNA helic 98.8 4.3E-08 1.5E-12 77.6 9.7 104 11-129 78-189 (434)
45 1gm5_A RECG; helicase, replica 98.7 5.2E-08 1.8E-12 82.9 9.3 110 8-129 365-481 (780)
46 3fe2_A Probable ATP-dependent 98.7 4.2E-08 1.5E-12 71.6 7.2 103 11-128 51-161 (242)
47 2xgj_A ATP-dependent RNA helic 98.7 2.7E-08 9.3E-13 86.6 6.7 94 8-129 83-178 (1010)
48 3ly5_A ATP-dependent RNA helic 98.6 8E-08 2.7E-12 71.3 7.6 74 11-88 76-153 (262)
49 3fmp_B ATP-dependent RNA helic 98.5 1.5E-07 5E-12 74.9 6.7 80 10-95 113-199 (479)
50 2zj8_A DNA helicase, putative 98.5 1.9E-07 6.4E-12 78.2 7.5 97 11-129 23-124 (720)
51 3sqw_A ATP-dependent RNA helic 98.5 3.1E-07 1.1E-11 75.0 7.8 73 11-85 43-119 (579)
52 2p6r_A Afuhel308 helicase; pro 98.5 1.9E-07 6.4E-12 78.0 6.0 97 11-129 25-124 (702)
53 4a4z_A Antiviral helicase SKI2 98.5 5.1E-07 1.7E-11 78.6 8.7 81 8-97 36-118 (997)
54 2va8_A SSO2462, SKI2-type heli 98.4 6.4E-07 2.2E-11 74.8 8.8 102 8-129 26-131 (715)
55 3l9o_A ATP-dependent RNA helic 98.4 3.3E-07 1.1E-11 80.5 7.2 71 8-87 181-253 (1108)
56 3i5x_A ATP-dependent RNA helic 98.4 7.1E-07 2.4E-11 72.2 8.3 73 11-85 94-170 (563)
57 3fmo_B ATP-dependent RNA helic 98.3 2.6E-06 9E-11 64.5 8.2 100 10-128 113-219 (300)
58 1oyw_A RECQ helicase, ATP-depe 98.2 7.5E-07 2.6E-11 72.4 4.3 72 10-95 24-97 (523)
59 2v1x_A ATP-dependent DNA helic 98.2 2.5E-06 8.5E-11 70.4 6.6 100 10-128 43-145 (591)
60 4ddu_A Reverse gyrase; topoiso 98.1 1.4E-05 5E-10 70.2 9.5 82 8-98 75-159 (1104)
61 1gku_B Reverse gyrase, TOP-RG; 98.0 2.1E-05 7.1E-10 68.8 8.4 102 8-128 54-164 (1054)
62 3crv_A XPD/RAD3 related DNA he 97.6 0.00027 9.3E-09 57.5 8.8 79 9-95 1-83 (551)
63 2vl7_A XPD; helicase, unknown 97.6 0.00018 6.3E-09 58.5 7.5 68 9-84 5-74 (540)
64 3llm_A ATP-dependent RNA helic 97.0 0.0012 4.1E-08 47.7 5.9 73 9-85 59-133 (235)
65 4a15_A XPD helicase, ATP-depen 97.0 0.00092 3.1E-08 55.4 5.9 82 10-95 2-87 (620)
66 4f92_B U5 small nuclear ribonu 97.0 0.0017 5.7E-08 59.6 7.4 98 12-128 927-1029(1724)
67 1c4o_A DNA nucleotide excision 96.9 0.003 1E-07 52.7 7.8 78 9-94 6-86 (664)
68 4f92_B U5 small nuclear ribonu 96.6 0.0044 1.5E-07 56.8 7.3 102 11-128 79-190 (1724)
69 2d7d_A Uvrabc system protein B 96.6 0.0059 2E-07 50.9 7.4 79 8-94 9-90 (661)
70 4b3f_X DNA-binding protein smu 96.2 0.017 5.7E-07 47.8 8.0 67 9-83 187-255 (646)
71 1tf5_A Preprotein translocase 95.8 0.065 2.2E-06 46.1 9.8 76 9-96 81-161 (844)
72 2fsf_A Preprotein translocase 95.2 0.11 3.7E-06 44.7 9.2 75 10-96 73-152 (853)
73 2gk6_A Regulator of nonsense t 94.8 0.082 2.8E-06 43.6 7.4 66 10-83 179-246 (624)
74 1nkt_A Preprotein translocase 94.7 0.16 5.5E-06 44.0 9.0 75 10-96 110-189 (922)
75 3upu_A ATP-dependent DNA helic 94.6 0.15 5.2E-06 40.3 8.2 61 10-74 24-85 (459)
76 2v6i_A RNA helicase; membrane, 94.6 0.02 6.7E-07 45.1 3.0 47 31-82 3-52 (431)
77 3e1s_A Exodeoxyribonuclease V, 94.2 0.14 4.9E-06 41.9 7.3 59 9-76 187-245 (574)
78 1yks_A Genome polyprotein [con 94.1 0.029 1E-06 44.3 2.9 51 29-84 7-60 (440)
79 2wjy_A Regulator of nonsense t 93.9 0.16 5.6E-06 43.3 7.4 66 10-83 355-422 (800)
80 2xzl_A ATP-dependent helicase 93.8 0.12 4.1E-06 44.1 6.4 66 10-83 359-426 (802)
81 2z83_A Helicase/nucleoside tri 93.8 0.033 1.1E-06 44.2 2.7 49 29-82 20-71 (459)
82 2ipc_A Preprotein translocase 93.3 0.42 1.4E-05 41.7 8.8 75 9-95 77-156 (997)
83 3o8b_A HCV NS3 protease/helica 93.1 0.011 3.9E-07 49.5 -1.0 49 29-85 231-281 (666)
84 2wv9_A Flavivirin protease NS2 93.0 0.052 1.8E-06 45.4 2.8 52 29-85 240-294 (673)
85 2jlq_A Serine protease subunit 90.8 0.13 4.3E-06 40.6 2.6 49 29-82 17-69 (451)
86 2b8t_A Thymidine kinase; deoxy 90.7 0.43 1.5E-05 34.4 5.2 35 33-72 15-49 (223)
87 1w36_D RECD, exodeoxyribonucle 90.5 0.83 2.8E-05 37.5 7.3 59 13-76 151-209 (608)
88 2whx_A Serine protease/ntpase/ 90.0 0.17 5.7E-06 41.9 2.8 50 29-83 185-237 (618)
89 3rc3_A ATP-dependent RNA helic 90.0 0.55 1.9E-05 39.3 6.0 57 29-96 154-212 (677)
90 3lfu_A DNA helicase II; SF1 he 90.0 0.65 2.2E-05 37.8 6.3 68 10-84 8-77 (647)
91 2j9r_A Thymidine kinase; TK1, 88.6 0.87 3E-05 32.8 5.4 33 35-72 33-65 (214)
92 1xx6_A Thymidine kinase; NESG, 87.6 1.1 3.6E-05 31.5 5.3 35 33-72 11-45 (191)
93 2xau_A PRE-mRNA-splicing facto 87.4 0.8 2.7E-05 38.8 5.2 65 15-84 97-163 (773)
94 2orw_A Thymidine kinase; TMTK, 86.9 0.97 3.3E-05 31.2 4.7 35 33-72 6-40 (184)
95 1a5t_A Delta prime, HOLB; zinc 84.7 1.7 5.8E-05 32.6 5.4 46 12-57 3-51 (334)
96 4b4t_J 26S protease regulatory 83.9 1.3 4.5E-05 34.9 4.6 41 31-79 183-223 (405)
97 1uaa_A REP helicase, protein ( 83.7 2 7E-05 35.3 5.9 67 11-85 2-71 (673)
98 2w58_A DNAI, primosome compone 83.6 4.5 0.00015 27.5 6.9 26 31-56 55-80 (202)
99 4b4t_M 26S protease regulatory 82.9 1.3 4.4E-05 35.2 4.2 41 31-79 216-256 (434)
100 4b4t_L 26S protease subunit RP 82.6 1.4 4.6E-05 35.1 4.2 41 31-79 216-256 (437)
101 1w4r_A Thymidine kinase; type 81.9 2.5 8.5E-05 30.0 5.0 34 34-72 24-57 (195)
102 3e2i_A Thymidine kinase; Zn-bi 79.7 3.2 0.00011 30.0 5.0 34 34-72 32-65 (219)
103 4b4t_K 26S protease regulatory 79.7 1.9 6.6E-05 34.1 4.2 40 31-78 207-246 (428)
104 2o0j_A Terminase, DNA packagin 79.1 5.8 0.0002 30.9 6.7 59 8-73 160-218 (385)
105 2orv_A Thymidine kinase; TP4A 78.9 3.5 0.00012 30.1 5.1 34 34-72 23-56 (234)
106 4b4t_I 26S protease regulatory 78.3 2.2 7.5E-05 34.0 4.1 41 31-79 217-257 (437)
107 4b4t_H 26S protease regulatory 77.8 2.2 7.4E-05 34.3 4.0 40 31-78 244-283 (467)
108 3h4m_A Proteasome-activating n 76.4 5.1 0.00018 28.7 5.4 40 31-78 52-91 (285)
109 1pjr_A PCRA; DNA repair, DNA r 75.8 5.9 0.0002 33.0 6.3 56 11-73 11-66 (724)
110 2zts_A Putative uncharacterize 75.0 7.9 0.00027 26.8 6.0 44 33-80 33-76 (251)
111 3hjh_A Transcription-repair-co 75.0 3.5 0.00012 33.1 4.5 52 33-93 17-70 (483)
112 2qgz_A Helicase loader, putati 74.8 10 0.00035 28.1 6.9 25 31-55 153-177 (308)
113 3jux_A Protein translocase sub 74.7 5.1 0.00018 34.4 5.6 64 11-85 75-143 (822)
114 1byi_A Dethiobiotin synthase; 74.5 5.9 0.0002 27.3 5.2 33 34-71 6-38 (224)
115 4dzz_A Plasmid partitioning pr 73.1 4.3 0.00015 27.5 4.1 31 36-71 8-38 (206)
116 2qz4_A Paraplegin; AAA+, SPG7, 72.3 18 0.00061 25.3 7.4 35 32-74 41-75 (262)
117 3uk6_A RUVB-like 2; hexameric 71.4 9.1 0.00031 28.4 5.9 41 14-54 50-94 (368)
118 3of5_A Dethiobiotin synthetase 71.1 4.9 0.00017 28.7 4.1 26 34-59 9-34 (228)
119 3ec2_A DNA replication protein 70.7 11 0.00036 25.1 5.6 42 14-55 17-63 (180)
120 3cpe_A Terminase, DNA packagin 70.0 14 0.00048 30.0 7.0 59 8-73 160-218 (592)
121 1ofh_A ATP-dependent HSL prote 69.7 13 0.00044 26.7 6.2 24 31-54 51-74 (310)
122 1lv7_A FTSH; alpha/beta domain 69.5 19 0.00064 25.3 7.0 22 32-53 47-68 (257)
123 3kjh_A CO dehydrogenase/acetyl 69.5 3 0.0001 29.0 2.7 29 37-70 7-35 (254)
124 1cp2_A CP2, nitrogenase iron p 69.4 4.9 0.00017 28.6 3.9 27 38-69 9-35 (269)
125 3qxc_A Dethiobiotin synthetase 69.4 5.5 0.00019 28.8 4.1 26 34-59 26-51 (242)
126 2oze_A ORF delta'; para, walke 69.2 5.4 0.00019 28.9 4.1 28 37-69 44-71 (298)
127 2r44_A Uncharacterized protein 69.2 4.1 0.00014 30.1 3.4 35 18-52 34-68 (331)
128 3fwy_A Light-independent proto 69.0 5.3 0.00018 30.0 4.1 27 39-70 57-83 (314)
129 3dm5_A SRP54, signal recogniti 68.7 22 0.00077 28.1 7.8 52 34-90 104-156 (443)
130 3end_A Light-independent proto 68.5 5.6 0.00019 29.1 4.1 29 37-70 48-76 (307)
131 3zq6_A Putative arsenical pump 68.5 5.5 0.00019 29.7 4.1 33 34-71 18-50 (324)
132 1g3q_A MIND ATPase, cell divis 68.0 9 0.00031 26.5 4.9 33 34-71 7-39 (237)
133 3fgn_A Dethiobiotin synthetase 67.6 6.2 0.00021 28.7 4.1 26 34-59 31-56 (251)
134 3n70_A Transport activator; si 67.5 10 0.00036 24.4 4.9 22 29-50 23-44 (145)
135 2c9o_A RUVB-like 1; hexameric 67.2 9.1 0.00031 29.9 5.3 42 32-79 65-106 (456)
136 2afh_E Nitrogenase iron protei 67.1 6.3 0.00022 28.5 4.1 27 38-69 10-36 (289)
137 1jbk_A CLPB protein; beta barr 66.7 10 0.00035 24.6 4.8 25 32-56 45-69 (195)
138 3eie_A Vacuolar protein sortin 66.0 5 0.00017 29.8 3.4 39 32-78 53-91 (322)
139 3t15_A Ribulose bisphosphate c 65.8 4 0.00014 30.0 2.8 36 32-75 38-73 (293)
140 3q9l_A Septum site-determining 65.5 11 0.00036 26.5 4.9 33 34-71 7-39 (260)
141 1hyq_A MIND, cell division inh 65.3 11 0.00039 26.5 5.1 33 34-71 7-39 (263)
142 3k9g_A PF-32 protein; ssgcid, 65.0 6.3 0.00022 28.1 3.7 32 33-70 31-62 (267)
143 3ug7_A Arsenical pump-driving 64.3 15 0.00051 27.7 5.8 33 33-70 29-61 (349)
144 3u4q_B ATP-dependent helicase/ 64.0 8.6 0.00029 33.8 4.9 47 37-85 8-55 (1166)
145 2ph1_A Nucleotide-binding prot 63.3 12 0.0004 26.7 4.8 33 34-71 23-55 (262)
146 3cio_A ETK, tyrosine-protein k 63.2 12 0.00043 27.5 5.1 32 34-70 109-140 (299)
147 2qp9_X Vacuolar protein sortin 63.1 6 0.0002 29.9 3.4 37 32-76 86-122 (355)
148 2bjv_A PSP operon transcriptio 62.8 16 0.00056 25.8 5.6 23 29-51 28-50 (265)
149 2dr3_A UPF0273 protein PH0284; 62.8 21 0.00071 24.5 6.0 43 33-80 26-68 (247)
150 2p65_A Hypothetical protein PF 62.6 10 0.00035 24.6 4.2 25 32-56 45-69 (187)
151 3cf0_A Transitional endoplasmi 61.9 13 0.00045 27.1 5.0 22 31-52 50-71 (301)
152 3bos_A Putative DNA replicatio 61.4 35 0.0012 23.1 8.0 41 17-57 37-79 (242)
153 3syl_A Protein CBBX; photosynt 61.4 13 0.00043 26.9 4.8 44 33-77 70-113 (309)
154 1njg_A DNA polymerase III subu 61.1 19 0.00066 24.1 5.5 23 33-55 48-70 (250)
155 3bfv_A CAPA1, CAPB2, membrane 60.7 14 0.00048 26.8 4.9 32 34-70 87-118 (271)
156 3iqw_A Tail-anchored protein t 59.7 7.9 0.00027 29.3 3.5 33 34-71 20-52 (334)
157 2r8r_A Sensor protein; KDPD, P 59.7 16 0.00056 26.3 5.0 43 33-80 9-53 (228)
158 3u4q_A ATP-dependent helicase/ 59.6 14 0.00047 32.9 5.4 60 7-72 6-66 (1232)
159 3la6_A Tyrosine-protein kinase 59.1 15 0.00052 27.0 4.9 33 33-70 96-128 (286)
160 3ea0_A ATPase, para family; al 59.0 15 0.0005 25.5 4.6 33 34-71 9-42 (245)
161 2woj_A ATPase GET3; tail-ancho 58.9 8.7 0.0003 29.2 3.6 34 33-71 21-56 (354)
162 3pg5_A Uncharacterized protein 58.8 7.1 0.00024 29.6 3.1 28 37-69 9-36 (361)
163 3nbx_X ATPase RAVA; AAA+ ATPas 58.0 8 0.00027 31.1 3.4 25 28-52 39-63 (500)
164 3co5_A Putative two-component 57.3 12 0.00042 24.1 3.7 22 29-50 26-47 (143)
165 2chg_A Replication factor C sm 57.0 25 0.00084 23.3 5.4 25 32-56 40-64 (226)
166 1xwi_A SKD1 protein; VPS4B, AA 57.0 13 0.00046 27.5 4.4 40 32-78 47-86 (322)
167 3hws_A ATP-dependent CLP prote 56.2 27 0.00092 26.1 6.0 22 32-53 53-74 (363)
168 3d8b_A Fidgetin-like protein 1 56.0 11 0.00038 28.4 3.8 40 31-78 118-157 (357)
169 3vfd_A Spastin; ATPase, microt 56.0 14 0.00047 28.1 4.3 40 31-78 149-188 (389)
170 1sxj_C Activator 1 40 kDa subu 56.0 19 0.00066 26.6 5.1 40 16-55 30-71 (340)
171 3bh0_A DNAB-like replicative h 55.5 20 0.00068 26.5 5.1 36 33-73 71-106 (315)
172 4fcw_A Chaperone protein CLPB; 55.4 15 0.00052 26.4 4.4 23 33-55 50-72 (311)
173 2xj4_A MIPZ; replication, cell 55.0 17 0.00059 26.2 4.6 30 36-70 11-40 (286)
174 4a1f_A DNAB helicase, replicat 54.8 17 0.00058 27.7 4.6 37 33-74 49-85 (338)
175 3bgw_A DNAB-like replicative h 54.5 18 0.0006 28.5 4.8 36 33-73 200-235 (444)
176 1xp8_A RECA protein, recombina 53.8 22 0.00075 27.2 5.2 40 33-77 77-116 (366)
177 2r62_A Cell division protease 53.7 8.9 0.0003 27.2 2.8 24 31-54 45-68 (268)
178 1wcv_1 SOJ, segregation protei 53.7 13 0.00046 26.3 3.7 32 34-70 11-42 (257)
179 1d2n_A N-ethylmaleimide-sensit 53.4 20 0.00069 25.5 4.7 22 32-53 66-87 (272)
180 3io3_A DEHA2D07832P; chaperone 52.7 13 0.00043 28.4 3.6 33 34-71 22-56 (348)
181 3b9p_A CG5977-PA, isoform A; A 52.5 18 0.00062 25.9 4.3 22 31-52 55-76 (297)
182 1iqp_A RFCS; clamp loader, ext 51.7 20 0.0007 25.7 4.5 40 16-55 30-71 (327)
183 2woo_A ATPase GET3; tail-ancho 51.6 22 0.00074 26.5 4.7 33 33-70 22-54 (329)
184 3u61_B DNA polymerase accessor 51.6 21 0.00071 26.0 4.6 20 34-53 52-71 (324)
185 1l8q_A Chromosomal replication 51.3 43 0.0015 24.3 6.3 39 32-75 39-77 (324)
186 2q6t_A DNAB replication FORK h 51.1 38 0.0013 26.2 6.2 38 33-74 203-240 (444)
187 1sxj_D Activator 1 41 kDa subu 50.4 12 0.00042 27.4 3.1 36 20-55 46-83 (353)
188 1u94_A RECA protein, recombina 49.7 26 0.0009 26.7 5.0 34 33-71 66-99 (356)
189 3cf2_A TER ATPase, transitiona 49.7 7.1 0.00024 33.4 1.9 41 31-79 512-552 (806)
190 1jr3_A DNA polymerase III subu 49.5 35 0.0012 25.1 5.6 23 33-55 41-63 (373)
191 3te6_A Regulatory protein SIR3 49.2 25 0.00086 26.5 4.7 25 33-57 48-72 (318)
192 1ihu_A Arsenical pump-driving 48.7 25 0.00086 28.3 5.0 34 33-71 11-44 (589)
193 1ojl_A Transcriptional regulat 48.6 30 0.001 25.4 5.0 23 29-51 24-46 (304)
194 3ez2_A Plasmid partition prote 48.1 20 0.00068 27.3 4.1 23 34-56 113-135 (398)
195 2r6a_A DNAB helicase, replicat 47.2 36 0.0012 26.5 5.6 36 33-72 206-241 (454)
196 1hqc_A RUVB; extended AAA-ATPa 47.2 60 0.002 23.3 6.5 24 31-54 39-62 (324)
197 3pfi_A Holliday junction ATP-d 47.0 63 0.0022 23.4 6.7 20 32-51 57-76 (338)
198 3fkq_A NTRC-like two-domain pr 46.7 30 0.001 26.2 4.9 33 33-70 147-179 (373)
199 3l0o_A Transcription terminati 45.1 47 0.0016 26.3 5.8 39 15-54 161-199 (427)
200 2z4s_A Chromosomal replication 44.8 59 0.002 25.2 6.4 45 32-79 132-176 (440)
201 1um8_A ATP-dependent CLP prote 44.5 32 0.0011 25.8 4.7 23 32-54 74-96 (376)
202 3igf_A ALL4481 protein; two-do 43.7 14 0.00046 28.6 2.5 27 39-70 11-37 (374)
203 3pxg_A Negative regulator of g 43.5 29 0.00098 27.2 4.5 25 32-56 203-227 (468)
204 3cwq_A Para family chromosome 43.2 39 0.0013 23.1 4.7 30 35-70 6-35 (209)
205 1u0j_A DNA replication protein 43.0 45 0.0015 24.5 5.2 21 33-53 107-127 (267)
206 1q57_A DNA primase/helicase; d 42.8 20 0.00069 28.3 3.5 37 33-73 245-281 (503)
207 2v1u_A Cell division control p 42.4 31 0.0011 25.3 4.3 25 32-56 46-70 (387)
208 3hu3_A Transitional endoplasmi 41.7 27 0.00092 27.8 4.1 20 32-51 240-259 (489)
209 2zan_A Vacuolar protein sortin 41.2 26 0.00089 27.3 3.9 40 32-78 169-208 (444)
210 1sxj_A Activator 1 95 kDa subu 39.4 45 0.0015 26.4 5.1 23 32-54 79-101 (516)
211 2qby_B CDC6 homolog 3, cell di 38.9 55 0.0019 24.0 5.3 25 32-56 47-71 (384)
212 3ez9_A Para; DNA binding, wing 38.2 18 0.00061 27.6 2.5 22 34-55 116-137 (403)
213 2zr9_A Protein RECA, recombina 38.1 55 0.0019 24.7 5.2 35 33-72 64-98 (349)
214 1tue_A Replication protein E1; 37.8 43 0.0015 23.9 4.2 22 33-54 61-82 (212)
215 2chq_A Replication factor C sm 37.8 40 0.0014 24.0 4.2 40 16-55 22-63 (319)
216 2r2a_A Uncharacterized protein 37.4 28 0.00097 24.1 3.2 22 33-54 8-29 (199)
217 2obn_A Hypothetical protein; s 37.2 38 0.0013 26.0 4.1 27 33-59 156-182 (349)
218 1g41_A Heat shock protein HSLU 36.1 62 0.0021 25.5 5.3 24 31-54 51-74 (444)
219 2w0m_A SSO2452; RECA, SSPF, un 36.1 69 0.0024 21.4 5.1 35 33-72 26-60 (235)
220 3io5_A Recombination and repai 36.0 61 0.0021 24.7 5.1 24 34-57 32-55 (333)
221 2ce7_A Cell division protein F 35.9 49 0.0017 26.3 4.7 36 31-74 50-85 (476)
222 1sxj_B Activator 1 37 kDa subu 35.9 67 0.0023 22.8 5.2 24 32-55 44-67 (323)
223 1fnn_A CDC6P, cell division co 35.7 85 0.0029 22.9 5.9 23 32-54 46-68 (389)
224 1wx1_A Nicotinate-nucleotide-- 35.7 48 0.0016 25.3 4.4 28 29-56 153-180 (335)
225 3ice_A Transcription terminati 35.4 89 0.003 24.7 6.0 35 17-52 162-196 (422)
226 3vkw_A Replicase large subunit 35.3 16 0.00056 29.0 1.8 41 33-83 164-206 (446)
227 1e9r_A Conjugal transfer prote 34.8 61 0.0021 24.7 5.0 38 31-73 54-91 (437)
228 3k1j_A LON protease, ATP-depen 34.5 50 0.0017 26.7 4.6 37 16-52 46-82 (604)
229 4akg_A Glutathione S-transfera 34.1 91 0.0031 30.5 6.8 47 8-54 623-669 (2695)
230 4hdr_B ARSB; transferase; HET: 33.3 55 0.0019 25.2 4.5 28 29-56 162-189 (350)
231 2xxa_A Signal recognition part 33.2 71 0.0024 24.9 5.2 31 36-71 106-137 (433)
232 3pxi_A Negative regulator of g 33.0 68 0.0023 26.6 5.3 23 33-55 524-546 (758)
233 2eyq_A TRCF, transcription-rep 33.0 31 0.0011 30.5 3.4 50 34-92 21-72 (1151)
234 2gno_A DNA polymerase III, gam 32.6 38 0.0013 25.0 3.4 38 16-53 2-41 (305)
235 4hdr_A ARSA; transferase; HET: 32.0 46 0.0016 25.6 3.8 28 29-56 169-196 (348)
236 2yvu_A Probable adenylyl-sulfa 31.7 92 0.0032 20.4 5.0 23 34-56 17-39 (186)
237 3hr8_A Protein RECA; alpha and 31.3 81 0.0028 24.0 5.1 34 34-72 65-98 (356)
238 3pxi_A Negative regulator of g 31.2 57 0.0019 27.1 4.6 24 32-55 203-226 (758)
239 1w5s_A Origin recognition comp 31.1 86 0.003 23.2 5.3 43 13-55 27-77 (412)
240 1g5t_A COB(I)alamin adenosyltr 31.1 79 0.0027 22.1 4.7 32 33-69 31-62 (196)
241 1ihu_A Arsenical pump-driving 31.0 71 0.0024 25.6 5.0 32 33-69 330-361 (589)
242 4ag6_A VIRB4 ATPase, type IV s 30.5 1E+02 0.0035 23.1 5.6 39 29-72 34-72 (392)
243 2ga8_A Hypothetical 39.9 kDa p 30.4 96 0.0033 23.8 5.4 20 33-52 27-46 (359)
244 1yrb_A ATP(GTP)binding protein 30.0 77 0.0026 21.9 4.6 32 33-70 17-48 (262)
245 3trf_A Shikimate kinase, SK; a 30.0 48 0.0017 21.7 3.3 19 33-51 8-26 (185)
246 2pa8_L DNA-directed RNA polyme 29.5 24 0.00083 21.6 1.6 13 119-131 35-47 (92)
247 2cvh_A DNA repair and recombin 28.5 1.3E+02 0.0044 19.9 5.4 32 33-72 23-54 (220)
248 1l5o_A COBT, nicotinate-nucleo 28.4 52 0.0018 25.3 3.6 27 29-55 165-191 (356)
249 2g0t_A Conserved hypothetical 28.4 65 0.0022 24.6 4.1 26 34-59 174-199 (350)
250 3sqn_A Conserved domain protei 28.3 89 0.003 24.7 5.1 57 61-130 396-455 (485)
251 1g8p_A Magnesium-chelatase 38 28.3 53 0.0018 23.8 3.5 24 31-54 46-69 (350)
252 2oap_1 GSPE-2, type II secreti 28.1 72 0.0025 25.5 4.5 33 19-51 249-281 (511)
253 1zu4_A FTSY; GTPase, signal re 27.7 89 0.0031 23.2 4.8 31 36-71 111-141 (320)
254 3kl4_A SRP54, signal recogniti 27.5 1.4E+02 0.0048 23.4 6.0 48 34-86 101-149 (433)
255 1in4_A RUVB, holliday junction 27.4 81 0.0028 23.2 4.5 24 31-54 52-75 (334)
256 1qvr_A CLPB protein; coiled co 27.3 70 0.0024 27.0 4.5 23 33-55 591-613 (854)
257 2qby_A CDC6 homolog 1, cell di 27.0 62 0.0021 23.5 3.8 25 32-56 47-71 (386)
258 3vaa_A Shikimate kinase, SK; s 26.9 59 0.002 21.8 3.4 21 31-51 26-46 (199)
259 2ck3_A ATP synthase subunit al 26.1 48 0.0017 26.8 3.1 38 18-56 151-188 (510)
260 4a0g_A Adenosylmethionine-8-am 25.4 55 0.0019 27.9 3.5 24 34-57 39-62 (831)
261 1r6b_X CLPA protein; AAA+, N-t 25.2 93 0.0032 25.7 4.8 25 32-56 209-233 (758)
262 1r6b_X CLPA protein; AAA+, N-t 24.8 63 0.0022 26.7 3.7 22 33-54 491-512 (758)
263 3cmu_A Protein RECA, recombina 24.8 96 0.0033 29.5 5.1 42 33-79 735-776 (2050)
264 3pvs_A Replication-associated 24.6 66 0.0022 25.2 3.6 21 32-52 52-72 (447)
265 2x8a_A Nuclear valosin-contain 24.4 1E+02 0.0035 22.1 4.5 20 32-51 46-65 (274)
266 3iij_A Coilin-interacting nucl 24.4 70 0.0024 20.8 3.3 20 32-51 13-32 (180)
267 1kht_A Adenylate kinase; phosp 24.2 72 0.0025 20.7 3.4 21 34-54 7-27 (192)
268 3u4g_A NAMN:DMB phosphoribosyl 24.1 76 0.0026 24.2 3.8 26 29-54 133-158 (337)
269 3kb2_A SPBC2 prophage-derived 24.1 73 0.0025 20.2 3.3 18 34-51 5-22 (173)
270 3lw7_A Adenylate kinase relate 23.9 55 0.0019 20.7 2.7 17 34-50 5-21 (179)
271 2z43_A DNA repair and recombin 23.8 66 0.0023 23.7 3.4 39 33-73 110-151 (324)
272 1xpp_A TA1416, DNA-directed RN 23.5 35 0.0012 21.9 1.5 13 119-131 45-57 (115)
273 4akg_A Glutathione S-transfera 23.3 2.1E+02 0.0071 28.2 7.1 59 14-74 907-965 (2695)
274 2rhm_A Putative kinase; P-loop 23.2 67 0.0023 20.9 3.0 18 34-51 9-26 (193)
275 1zuh_A Shikimate kinase; alpha 23.2 80 0.0027 20.2 3.4 19 33-51 10-28 (168)
276 2j37_W Signal recognition part 22.9 1.3E+02 0.0045 24.0 5.1 32 35-71 106-137 (504)
277 1ixz_A ATP-dependent metallopr 22.9 1.7E+02 0.0059 20.1 5.3 20 32-51 51-70 (254)
278 3cf2_A TER ATPase, transitiona 22.6 31 0.0011 29.5 1.4 39 32-78 240-278 (806)
279 2v3c_C SRP54, signal recogniti 22.2 76 0.0026 24.8 3.5 32 35-71 104-135 (432)
280 2dhr_A FTSH; AAA+ protein, hex 21.9 2.4E+02 0.0083 22.4 6.5 21 32-52 66-86 (499)
281 2qen_A Walker-type ATPase; unk 21.8 1.3E+02 0.0045 21.4 4.6 36 13-51 17-52 (350)
282 2jaq_A Deoxyguanosine kinase; 21.7 86 0.0029 20.5 3.4 20 34-53 4-23 (205)
283 3nwn_A Kinesin-like protein KI 21.5 87 0.003 23.9 3.7 21 29-49 102-124 (359)
284 1vma_A Cell division protein F 21.4 1.7E+02 0.0058 21.5 5.2 32 35-71 109-140 (306)
285 2owm_A Nckin3-434, related to 21.3 1.1E+02 0.0036 24.2 4.2 20 29-48 134-155 (443)
286 1y63_A LMAJ004144AAA protein; 21.3 64 0.0022 21.3 2.6 19 33-51 13-31 (184)
287 3dc4_A Kinesin-like protein NO 21.3 89 0.003 23.7 3.7 19 29-47 93-112 (344)
288 3gbj_A KIF13B protein; kinesin 21.2 1.1E+02 0.0038 23.2 4.2 20 29-48 90-111 (354)
289 2qe7_A ATP synthase subunit al 21.2 48 0.0016 26.8 2.2 36 18-54 151-186 (502)
290 3tqf_A HPR(Ser) kinase; transf 21.0 60 0.0021 22.6 2.4 23 30-52 16-38 (181)
291 1twf_K B13.6, DNA-directed RNA 21.0 43 0.0015 21.6 1.6 13 119-131 53-65 (120)
292 1x88_A Kinesin-like protein KI 21.0 1E+02 0.0036 23.4 4.0 21 29-49 86-108 (359)
293 1via_A Shikimate kinase; struc 20.8 93 0.0032 20.1 3.4 19 33-51 7-25 (175)
294 2vhj_A Ntpase P4, P4; non- hyd 20.8 78 0.0027 24.1 3.2 21 33-53 126-146 (331)
295 1qhx_A CPT, protein (chloramph 20.8 70 0.0024 20.6 2.7 18 34-51 7-24 (178)
296 2r9v_A ATP synthase subunit al 20.7 48 0.0016 26.9 2.1 36 18-54 164-199 (515)
297 1nks_A Adenylate kinase; therm 20.7 82 0.0028 20.4 3.1 21 34-54 5-25 (194)
298 1qvr_A CLPB protein; coiled co 20.6 1.3E+02 0.0043 25.5 4.8 25 32-56 193-217 (854)
299 1ak2_A Adenylate kinase isoenz 20.6 90 0.0031 21.4 3.4 19 33-51 19-37 (233)
300 3mbd_A Fructose-bisphosphate a 20.6 77 0.0026 24.3 3.1 41 10-50 4-47 (342)
301 2wbe_C Bipolar kinesin KRP-130 20.4 1.2E+02 0.0039 23.3 4.2 21 29-49 98-120 (373)
302 1ny5_A Transcriptional regulat 20.4 2.4E+02 0.0083 21.2 6.0 17 32-48 162-178 (387)
No 1
>3mwy_W Chromo domain-containing protein 1; SWI2/SNF2 ATPase, double chromodomains, hydrolase; HET: ATG; 3.70A {Saccharomyces cerevisiae}
Probab=99.92 E-value=4.8e-25 Score=187.11 Aligned_cols=120 Identities=27% Similarity=0.403 Sum_probs=95.5
Q ss_pred CCCcchHHHHHHHHHHHHhhcccCeeeeCCCCCCHHHHHHHHHHHHHHhCCCCCCCCEEEEecCCchhhhhh-hhcccCC
Q psy2050 9 NLKLAGYQLVGLNWLAVMHNQQLCGILADEMGLGKTIQVISFLAYLHEAGLSRPKSPHLIIVPSSTLCKYKV-PSRWRTS 87 (131)
Q Consensus 9 ~~~L~~~Q~~~v~~l~~~~~~~~g~ilad~mGlGKT~~~ia~l~~~~~~~~~~~~~~~LIv~P~sl~~~W~~-~~~~~p~ 87 (131)
+.+|||||++|++||...+..+.+|||||+||+|||+++++++..+...+.. .+|+|||||.+++.||.+ |++|+|+
T Consensus 234 ~~~Lr~yQ~egv~~l~~~~~~~~~~ILademGlGKT~~ai~~i~~l~~~~~~--~~~~LIV~P~sll~qW~~E~~~~~p~ 311 (800)
T 3mwy_W 234 GGELRDFQLTGINWMAFLWSKGDNGILADEMGLGKTVQTVAFISWLIFARRQ--NGPHIIVVPLSTMPAWLDTFEKWAPD 311 (800)
T ss_dssp SSCCCTHHHHHHHHHHHHHTTTCCEEECCCTTSSTTHHHHHHHHHHHHHHSC--CSCEEEECCTTTHHHHHHHHHHHSTT
T ss_pred CCCcCHHHHHHHHHHHHHhhcCCCEEEEeCCCcchHHHHHHHHHHHHHhcCC--CCCEEEEECchHHHHHHHHHHHHCCC
Confidence 5799999999999999999999999999999999999999999887655444 689999999999999999 9999999
Q ss_pred CceeeccCCCcchhhhhhcCccC--CCCCCCCCCCcEEEEccccC
Q psy2050 88 NCDKTSPVKPQTITVAQLRVPEC--DQSPSQEVGYNDIIMYLNIP 130 (131)
Q Consensus 88 ~~v~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~VvIttY~~~ 130 (131)
+++.++++....+.......... ........+++||||||++.
T Consensus 312 ~~v~~~~g~~~~r~~~~~~~~~~~~~~~~~~~~~~dvvitTy~~l 356 (800)
T 3mwy_W 312 LNCICYMGNQKSRDTIREYEFYTNPRAKGKKTMKFNVLLTTYEYI 356 (800)
T ss_dssp CCEEECCCSSHHHHHHHHHHSCSCC-----CCCCCSEEEECTTHH
T ss_pred ceEEEEeCCHHHHHHHHHHHhhccccccccccccCCEEEecHHHH
Confidence 99999988876543322211100 00112334689999999863
No 2
>1z63_A Helicase of the SNF2/RAD54 hamily; protein-DNA complex, hydrolase/DNA complex complex; 3.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 c.37.1.19 PDB: 1z6a_A
Probab=99.89 E-value=5.8e-23 Score=164.89 Aligned_cols=106 Identities=25% Similarity=0.372 Sum_probs=89.9
Q ss_pred CCCCCCcchHHHHHHHHHHHHhhcccCeeeeCCCCCCHHHHHHHHHHHHHHhCCCCCCCCEEEEecCCchhhhhh-hhcc
Q psy2050 6 KARNLKLAGYQLVGLNWLAVMHNQQLCGILADEMGLGKTIQVISFLAYLHEAGLSRPKSPHLIIVPSSTLCKYKV-PSRW 84 (131)
Q Consensus 6 ~~~~~~L~~~Q~~~v~~l~~~~~~~~g~ilad~mGlGKT~~~ia~l~~~~~~~~~~~~~~~LIv~P~sl~~~W~~-~~~~ 84 (131)
.+.+.+|+|||++|+.|+......+.||||||+||+|||+++++++..+...+. .+++|||||.+++.||.+ +++|
T Consensus 32 ~~~~~~L~~~Q~~~v~~l~~~~~~~~~~ilad~~GlGKT~~ai~~i~~~~~~~~---~~~~LIv~P~~l~~qw~~e~~~~ 108 (500)
T 1z63_A 32 YNIKANLRPYQIKGFSWMRFMNKLGFGICLADDMGLGKTLQTIAVFSDAKKENE---LTPSLVICPLSVLKNWEEELSKF 108 (500)
T ss_dssp CSCSSCCCHHHHHHHHHHHHHHHTTCCEEECCCTTSCHHHHHHHHHHHHHHTTC---CSSEEEEECSTTHHHHHHHHHHH
T ss_pred hhhhccchHHHHHHHHHHHHHhhCCCCEEEEeCCCCcHHHHHHHHHHHHHhcCC---CCCEEEEccHHHHHHHHHHHHHH
Confidence 346678999999999999988888889999999999999999999888776544 489999999999999999 9999
Q ss_pred cCCCceeeccCCCcchhhhhhcCccCCCCCCCCCCCcEEEEcccc
Q psy2050 85 RTSNCDKTSPVKPQTITVAQLRVPECDQSPSQEVGYNDIIMYLNI 129 (131)
Q Consensus 85 ~p~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~VvIttY~~ 129 (131)
+|+.++.++++...+. ...+++||||||+.
T Consensus 109 ~~~~~v~~~~g~~~~~---------------~~~~~~ivi~t~~~ 138 (500)
T 1z63_A 109 APHLRFAVFHEDRSKI---------------KLEDYDIILTTYAV 138 (500)
T ss_dssp CTTSCEEECSSSTTSC---------------CGGGSSEEEEEHHH
T ss_pred CCCceEEEEecCchhc---------------cccCCcEEEeeHHH
Confidence 9999998887765321 01257999999985
No 3
>1z3i_X Similar to RAD54-like; recombination ATPase helicase, recombination-DNA binding COM; 3.00A {Danio rerio} SCOP: c.37.1.19 c.37.1.19
Probab=99.86 E-value=3.8e-22 Score=165.99 Aligned_cols=119 Identities=19% Similarity=0.201 Sum_probs=85.3
Q ss_pred CCCCcchHHHHHHHHHHHHhh-----cccCeeeeCCCCCCHHHHHHHHHHHHHHhCCCC--CCCCEEEEecCCchhhhhh
Q psy2050 8 RNLKLAGYQLVGLNWLAVMHN-----QQLCGILADEMGLGKTIQVISFLAYLHEAGLSR--PKSPHLIIVPSSTLCKYKV 80 (131)
Q Consensus 8 ~~~~L~~~Q~~~v~~l~~~~~-----~~~g~ilad~mGlGKT~~~ia~l~~~~~~~~~~--~~~~~LIv~P~sl~~~W~~ 80 (131)
....|||||++|+.||..... .+.||||||+||+|||+++++++..+...+... ..+++|||||.+++.||.+
T Consensus 52 l~~~LrpyQ~~gv~~l~~~~~~~~~~~~~g~ILad~mGlGKT~~~i~~i~~l~~~~~~~~p~~~~~LiV~P~sll~qW~~ 131 (644)
T 1z3i_X 52 LSKVLRPHQREGVKFLWDCVTGRRIENSYGCIMADEMGLGKTLQCITLIWTLLKQSPDCKPEIDKVIVVSPSSLVRNWYN 131 (644)
T ss_dssp HHTTCCHHHHHHHHHHHHHHTTSSSTTCCEEEECCCTTSCHHHHHHHHHHHHHHCCTTSSCSCSCEEEEECHHHHHHHHH
T ss_pred hhhcccHHHHHHHHHHHHhhhcccccCCCCeEeeeCCCchHHHHHHHHHHHHHHhCccccCCCCcEEEEecHHHHHHHHH
Confidence 356899999999999988763 456899999999999999999998887765431 1367999999999999999
Q ss_pred -hhcccCC-CceeeccCCCcc-hhhhhhcCccCCCCCCCCCCCcEEEEcccc
Q psy2050 81 -PSRWRTS-NCDKTSPVKPQT-ITVAQLRVPECDQSPSQEVGYNDIIMYLNI 129 (131)
Q Consensus 81 -~~~~~p~-~~v~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~VvIttY~~ 129 (131)
+++|+|. ..+..++++... .......... .......++|+||||++
T Consensus 132 E~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~---~~~~~~~~~vvi~ty~~ 180 (644)
T 1z3i_X 132 EVGKWLGGRVQPVAIDGGSKDEIDSKLVNFIS---QQGMRIPTPILIISYET 180 (644)
T ss_dssp HHHHHHGGGCCEEEECSSCHHHHHHHHHHHHC---CCSSCCSCCEEEEEHHH
T ss_pred HHHHHcCCCeeEEEEeCCCHHHHHHHHHHHHH---hcCCCCCCcEEEeeHHH
Confidence 9999976 555554444322 1111111111 01112357899999985
No 4
>3dmq_A RNA polymerase-associated protein RAPA; SWF2/SNF2, transcription factor, RNA polymerase recycling, activator, ATP-binding, DNA-binding; 3.20A {Escherichia coli K12}
Probab=99.74 E-value=4.2e-18 Score=147.25 Aligned_cols=113 Identities=22% Similarity=0.092 Sum_probs=84.9
Q ss_pred ccCCCCCCcchHHHHHHHHHHHHhhcccCeeeeCCCCCCHHHHHHHHHHHHHHhCCCCCCCCEEEEecCCchhhhhh-hh
Q psy2050 4 ELKARNLKLAGYQLVGLNWLAVMHNQQLCGILADEMGLGKTIQVISFLAYLHEAGLSRPKSPHLIIVPSSTLCKYKV-PS 82 (131)
Q Consensus 4 ~~~~~~~~L~~~Q~~~v~~l~~~~~~~~g~ilad~mGlGKT~~~ia~l~~~~~~~~~~~~~~~LIv~P~sl~~~W~~-~~ 82 (131)
.+.+.+.+|+|||.+++.|+... .+.++||||+||+|||+++++++......+. .+++|||||.+++.||.+ +.
T Consensus 146 ~l~~~~~~LrpyQ~eav~~~l~~--~~~~~LLad~tGlGKTi~Ai~~i~~l~~~g~---~~rvLIVvP~sLl~Qw~~E~~ 220 (968)
T 3dmq_A 146 GLRGQRTSLIPHQLNIAHDVGRR--HAPRVLLADEVGLGKTIEAGMILHQQLLSGA---AERVLIIVPETLQHQWLVEML 220 (968)
T ss_dssp SSSCCSSCCCHHHHHHHHHHHHS--SSCEEEECCCTTSCHHHHHHHHHHHHHHTSS---CCCEEEECCTTTHHHHHHHHH
T ss_pred cccCCCCCCcHHHHHHHHHHHHh--cCCCEEEECCCCCcHHHHHHHHHHHHHHhCC---CCeEEEEeCHHHHHHHHHHHH
Confidence 35568899999999999998852 2457899999999999999999988877654 378999999999999999 97
Q ss_pred cccCCCceeeccCCCcchhhhhhcCccCCCCCCCCCCCcEEEEccccC
Q psy2050 83 RWRTSNCDKTSPVKPQTITVAQLRVPECDQSPSQEVGYNDIIMYLNIP 130 (131)
Q Consensus 83 ~~~p~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~VvIttY~~~ 130 (131)
+|+ ++++.++++.......... .....+++|||+||++.
T Consensus 221 ~~f-~l~v~v~~~~~~~~~~~~~--------~~~~~~~dIvI~T~~~L 259 (968)
T 3dmq_A 221 RRF-NLRFALFDDERYAEAQHDA--------YNPFDTEQLVICSLDFA 259 (968)
T ss_dssp HHS-CCCCEECCHHHHHHHHHTT--------CSSSTTCSEEEECHHHH
T ss_pred HHh-CCCEEEEccchhhhhhhhc--------ccccccCCEEEEcHHHH
Confidence 777 5666666554322111110 11123579999999863
No 5
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=99.63 E-value=2.9e-16 Score=122.65 Aligned_cols=102 Identities=13% Similarity=0.024 Sum_probs=79.9
Q ss_pred CCCCcchHHHHHHHHHHHHhhcccCeeeeCCCCCCHHHHHHHHHHHHHHhCCCCCCCCEEEEecC-Cchhhhhh-hhccc
Q psy2050 8 RNLKLAGYQLVGLNWLAVMHNQQLCGILADEMGLGKTIQVISFLAYLHEAGLSRPKSPHLIIVPS-STLCKYKV-PSRWR 85 (131)
Q Consensus 8 ~~~~L~~~Q~~~v~~l~~~~~~~~g~ilad~mGlGKT~~~ia~l~~~~~~~~~~~~~~~LIv~P~-sl~~~W~~-~~~~~ 85 (131)
...+|++||.+++.++. .+ +++++++||+|||++++.++....... ..++|||||. +++.||.+ +.+|+
T Consensus 6 ~~~~l~~~Q~~~i~~~~----~~-~~ll~~~tG~GKT~~~~~~~~~~~~~~----~~~~liv~P~~~L~~q~~~~~~~~~ 76 (494)
T 1wp9_A 6 DLIQPRIYQEVIYAKCK----ET-NCLIVLPTGLGKTLIAMMIAEYRLTKY----GGKVLMLAPTKPLVLQHAESFRRLF 76 (494)
T ss_dssp HHHCCCHHHHHHHHHGG----GS-CEEEECCTTSCHHHHHHHHHHHHHHHS----CSCEEEECSSHHHHHHHHHHHHHHB
T ss_pred CCCCccHHHHHHHHHHh----hC-CEEEEcCCCCCHHHHHHHHHHHHHhcC----CCeEEEEECCHHHHHHHHHHHHHHh
Confidence 45789999999999987 44 899999999999999999987665522 5889999997 89999999 99998
Q ss_pred --CCCceeeccCCCcchhhhhhcCccCCCCCCCCCCCcEEEEcccc
Q psy2050 86 --TSNCDKTSPVKPQTITVAQLRVPECDQSPSQEVGYNDIIMYLNI 129 (131)
Q Consensus 86 --p~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~VvIttY~~ 129 (131)
|..++..+++........... . +++|+|+||+.
T Consensus 77 ~~~~~~v~~~~g~~~~~~~~~~~--~---------~~~ivv~T~~~ 111 (494)
T 1wp9_A 77 NLPPEKIVALTGEKSPEERSKAW--A---------RAKVIVATPQT 111 (494)
T ss_dssp CSCGGGEEEECSCSCHHHHHHHH--H---------HCSEEEECHHH
T ss_pred CcchhheEEeeCCcchhhhhhhc--c---------CCCEEEecHHH
Confidence 666787777665443222111 1 36899999975
No 6
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A*
Probab=99.49 E-value=1e-13 Score=110.28 Aligned_cols=89 Identities=18% Similarity=0.166 Sum_probs=71.6
Q ss_pred CCCCcchHHHHHHHHHHHHhhcccCeeeeCCCCCCHHHHHHHHHHHHHHhCCCCCCCCEEEEecC-Cchhhhhh-hhccc
Q psy2050 8 RNLKLAGYQLVGLNWLAVMHNQQLCGILADEMGLGKTIQVISFLAYLHEAGLSRPKSPHLIIVPS-STLCKYKV-PSRWR 85 (131)
Q Consensus 8 ~~~~L~~~Q~~~v~~l~~~~~~~~g~ilad~mGlGKT~~~ia~l~~~~~~~~~~~~~~~LIv~P~-sl~~~W~~-~~~~~ 85 (131)
...+|++||.+++.++. .+..++++++||+|||++++..+... ..++||+||. +++.||.+ +.+|
T Consensus 90 ~~~~l~~~Q~~ai~~i~----~~~~~ll~~~TGsGKT~~~l~~i~~~--------~~~~Lvl~P~~~L~~Q~~~~~~~~- 156 (472)
T 2fwr_A 90 AEISLRDYQEKALERWL----VDKRGCIVLPTGSGKTHVAMAAINEL--------STPTLIVVPTLALAEQWKERLGIF- 156 (472)
T ss_dssp CCCCBCHHHHHHHHHHT----TTTEEEEECCTTSCHHHHHHHHHHHH--------CSCEEEEESSHHHHHHHHHHGGGG-
T ss_pred CCCCcCHHHHHHHHHHH----hcCCEEEEeCCCCCHHHHHHHHHHHc--------CCCEEEEECCHHHHHHHHHHHHhC-
Confidence 45689999999998876 45569999999999999999887654 4789999998 89999999 9995
Q ss_pred CCCc-eeeccCCCcchhhhhhcCccCCCCCCCCCCCcEEEEcccc
Q psy2050 86 TSNC-DKTSPVKPQTITVAQLRVPECDQSPSQEVGYNDIIMYLNI 129 (131)
Q Consensus 86 p~~~-v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~VvIttY~~ 129 (131)
+.+ +..++++... ..+|+|+||+.
T Consensus 157 -~~~~v~~~~g~~~~-------------------~~~Ivv~T~~~ 181 (472)
T 2fwr_A 157 -GEEYVGEFSGRIKE-------------------LKPLTVSTYDS 181 (472)
T ss_dssp -CGGGEEEBSSSCBC-------------------CCSEEEEEHHH
T ss_pred -CCcceEEECCCcCC-------------------cCCEEEEEcHH
Confidence 445 6666654432 25799999875
No 7
>1rif_A DAR protein, DNA helicase UVSW; bacteriophage, RECG, SF2, DNA binding protein; HET: DNA; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.23
Probab=99.45 E-value=2.9e-13 Score=101.58 Aligned_cols=99 Identities=15% Similarity=0.012 Sum_probs=71.9
Q ss_pred CCcchHHHHHHHHHHHHhhcccCeeeeCCCCCCHHHHHHHHHHHHHHhCCCCCCCCEEEEecC-Cchhhhhh-hhcccCC
Q psy2050 10 LKLAGYQLVGLNWLAVMHNQQLCGILADEMGLGKTIQVISFLAYLHEAGLSRPKSPHLIIVPS-STLCKYKV-PSRWRTS 87 (131)
Q Consensus 10 ~~L~~~Q~~~v~~l~~~~~~~~g~ilad~mGlGKT~~~ia~l~~~~~~~~~~~~~~~LIv~P~-sl~~~W~~-~~~~~p~ 87 (131)
.+|++||.+++.++.. +..+++++++|.|||+++++++......+ .+++||+||. +++.||.+ +++|...
T Consensus 112 ~~l~~~Q~~ai~~~l~----~~~~ll~~~tGsGKT~~~~~~~~~~~~~~----~~~~lil~Pt~~L~~q~~~~l~~~~~~ 183 (282)
T 1rif_A 112 IEPHWYQKDAVFEGLV----NRRRILNLPTSAGRSLIQALLARYYLENY----EGKILIIVPTTALTTQMADDFVDYRLF 183 (282)
T ss_dssp CCCCHHHHHHHHHHHH----HSEEEECCCTTSCHHHHHHHHHHHHHHHC----SSEEEEECSSHHHHHHHHHHHHHHTSC
T ss_pred cCccHHHHHHHHHHHh----cCCeEEEcCCCCCcHHHHHHHHHHHHHcC----CCeEEEEECCHHHHHHHHHHHHHhccc
Confidence 5899999999998773 46689999999999999988776554433 3589999996 78999999 9998643
Q ss_pred --CceeeccCCCcchhhhhhcCccCCCCCCCCCCCcEEEEcccc
Q psy2050 88 --NCDKTSPVKPQTITVAQLRVPECDQSPSQEVGYNDIIMYLNI 129 (131)
Q Consensus 88 --~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~VvIttY~~ 129 (131)
..+....++..... ....+.+|+|+||+.
T Consensus 184 ~~~~~~~~~~~~~~~~-------------~~~~~~~I~v~T~~~ 214 (282)
T 1rif_A 184 SHAMIKKIGGGASKDD-------------KYKNDAPVVVGTWQT 214 (282)
T ss_dssp CGGGEEECSTTCSSTT-------------CCCTTCSEEEECHHH
T ss_pred ccceEEEEeCCCcchh-------------hhccCCcEEEEchHH
Confidence 34444333332211 111257899999863
No 8
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=99.42 E-value=5.4e-13 Score=106.80 Aligned_cols=106 Identities=15% Similarity=0.017 Sum_probs=79.5
Q ss_pred CCCcchHHHHHHHHHHHHhhcccCeeeeCCCCCCHHHHHHHHHHHHHHhCCCCCCCCEEEEecC-Cchhhhhh-hhcccC
Q psy2050 9 NLKLAGYQLVGLNWLAVMHNQQLCGILADEMGLGKTIQVISFLAYLHEAGLSRPKSPHLIIVPS-STLCKYKV-PSRWRT 86 (131)
Q Consensus 9 ~~~L~~~Q~~~v~~l~~~~~~~~g~ilad~mGlGKT~~~ia~l~~~~~~~~~~~~~~~LIv~P~-sl~~~W~~-~~~~~p 86 (131)
.++|++||.+++.++. .+..+++++++|.|||++++..+.............++|||||. .++.||.+ ++++++
T Consensus 2 ~~~~~~~Q~~~i~~~~----~~~~~l~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~ 77 (555)
T 3tbk_A 2 PLKPRNYQLELALPAK----KGKNTIICAPTGCGKTFVSLLICEHHLKKFPCGQKGKVVFFANQIPVYEQQATVFSRYFE 77 (555)
T ss_dssp CCCCCHHHHHHHHHHH----TTCCEEEECCTTSCHHHHHHHHHHHHHHTCCSSCCCCEEEECSSHHHHHHHHHHHHHHHH
T ss_pred CCCCcHHHHHHHHHHh----CCCCEEEEeCCCChHHHHHHHHHHHHHHhcccCCCCEEEEEeCCHHHHHHHHHHHHHHhc
Confidence 4789999999999987 67889999999999999998887766555432224789999997 88999999 999987
Q ss_pred --CCceeeccCCCcchhh-hhhcCccCCCCCCCCCCCcEEEEcccc
Q psy2050 87 --SNCDKTSPVKPQTITV-AQLRVPECDQSPSQEVGYNDIIMYLNI 129 (131)
Q Consensus 87 --~~~v~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~VvIttY~~ 129 (131)
++++..+.++...... .... .+.+|+|+|++.
T Consensus 78 ~~~~~~~~~~g~~~~~~~~~~~~-----------~~~~i~v~T~~~ 112 (555)
T 3tbk_A 78 RLGYNIASISGATSDSVSVQHII-----------EDNDIIILTPQI 112 (555)
T ss_dssp TTTCCEEEECTTTGGGSCHHHHH-----------HHCSEEEECHHH
T ss_pred cCCcEEEEEcCCCcchhhHHHHh-----------cCCCEEEECHHH
Confidence 5666666555532211 1111 136899999864
No 9
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A*
Probab=99.41 E-value=6e-13 Score=110.32 Aligned_cols=106 Identities=16% Similarity=0.039 Sum_probs=78.4
Q ss_pred CCcchHHHHHHHHHHHHhhcccCeeeeCCCCCCHHHHHHHHHHHHHHhCCCCCCCCEEEEecC-Cchhhhhh-hhcccC-
Q psy2050 10 LKLAGYQLVGLNWLAVMHNQQLCGILADEMGLGKTIQVISFLAYLHEAGLSRPKSPHLIIVPS-STLCKYKV-PSRWRT- 86 (131)
Q Consensus 10 ~~L~~~Q~~~v~~l~~~~~~~~g~ilad~mGlGKT~~~ia~l~~~~~~~~~~~~~~~LIv~P~-sl~~~W~~-~~~~~p- 86 (131)
..|++||.+++.++. .+..+|+++++|+|||++++..+.............++||++|. +++.||.+ ++++++
T Consensus 12 ~~lr~~Q~~~i~~~l----~g~~~iv~~~TGsGKTl~~~~~i~~~l~~~~~~~~~~~lvl~Pt~~L~~Q~~~~~~~~~~~ 87 (696)
T 2ykg_A 12 FKPRNYQLELALPAM----KGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPVYEQNKSVFSKYFER 87 (696)
T ss_dssp -CCCHHHHHHHHHHH----TTCCEEEECCTTSSHHHHHHHHHHHHHHHSCTTCCCCEEEECSSHHHHHHHHHHHHHHTTT
T ss_pred CCccHHHHHHHHHHH----cCCCEEEEcCCCchHHHHHHHHHHHHHHhCccCCCCeEEEEECCHHHHHHHHHHHHHHhcc
Confidence 578999999999988 67889999999999999998877665554432224789999996 89999999 999987
Q ss_pred -CCceeeccCCCcc-hhhhhhcCccCCCCCCCCCCCcEEEEccccC
Q psy2050 87 -SNCDKTSPVKPQT-ITVAQLRVPECDQSPSQEVGYNDIIMYLNIP 130 (131)
Q Consensus 87 -~~~v~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~VvIttY~~~ 130 (131)
++++..+.|+... ....... .+.+|+|+|++++
T Consensus 88 ~~~~v~~~~g~~~~~~~~~~~~-----------~~~~Iiv~Tp~~L 122 (696)
T 2ykg_A 88 HGYRVTGISGATAENVPVEQIV-----------ENNDIIILTPQIL 122 (696)
T ss_dssp TTCCEEEECSSSCSSSCHHHHH-----------HTCSEEEECHHHH
T ss_pred CCceEEEEeCCccccccHHHhc-----------cCCCEEEECHHHH
Confidence 5666665554422 1111111 1478999998753
No 10
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=99.40 E-value=7.3e-13 Score=106.33 Aligned_cols=107 Identities=11% Similarity=-0.000 Sum_probs=76.2
Q ss_pred CCCCcchHHHHHHHHHHHHhhcccCeeeeCCCCCCHHHHHHHHHHHHHHhCCCCCCCCEEEEecC-Cchhhhhh-hhccc
Q psy2050 8 RNLKLAGYQLVGLNWLAVMHNQQLCGILADEMGLGKTIQVISFLAYLHEAGLSRPKSPHLIIVPS-STLCKYKV-PSRWR 85 (131)
Q Consensus 8 ~~~~L~~~Q~~~v~~l~~~~~~~~g~ilad~mGlGKT~~~ia~l~~~~~~~~~~~~~~~LIv~P~-sl~~~W~~-~~~~~ 85 (131)
...+|++||.+++.++. .+..+++++++|.|||++++..+.............++|||||. +++.||.+ +++++
T Consensus 4 ~~~~~~~~Q~~~i~~~~----~~~~~l~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~ 79 (556)
T 4a2p_A 4 ETKKARSYQIELAQPAI----NGKNALICAPTGSGKTFVSILICEHHFQNMPAGRKAKVVFLATKVPVYEQQKNVFKHHF 79 (556)
T ss_dssp ----CCHHHHHHHHHHH----TTCCEEEECCTTSCHHHHHHHHHHHHHHTCCSSCCCCEEEECSSHHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHH----cCCCEEEEcCCCChHHHHHHHHHHHHHHhCcccCCCeEEEEeCCHHHHHHHHHHHHHHh
Confidence 45789999999999987 67789999999999999998887766655443225789999997 78999999 99998
Q ss_pred C--CCceeeccCCCcchhh-hhhcCccCCCCCCCCCCCcEEEEcccc
Q psy2050 86 T--SNCDKTSPVKPQTITV-AQLRVPECDQSPSQEVGYNDIIMYLNI 129 (131)
Q Consensus 86 p--~~~v~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~VvIttY~~ 129 (131)
+ ++++..++++...... .... .+.+|+|+|++.
T Consensus 80 ~~~~~~~~~~~g~~~~~~~~~~~~-----------~~~~i~v~T~~~ 115 (556)
T 4a2p_A 80 ERQGYSVQGISGENFSNVSVEKVI-----------EDSDIIVVTPQI 115 (556)
T ss_dssp GGGTCCEEECCCC-----CHHHHH-----------HHCSEEEECHHH
T ss_pred cccCceEEEEeCCCCcchhHHHhh-----------CCCCEEEECHHH
Confidence 7 5677766665532211 1111 136899999864
No 11
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4}
Probab=99.39 E-value=7.9e-13 Score=106.13 Aligned_cols=100 Identities=13% Similarity=-0.018 Sum_probs=75.1
Q ss_pred CCCcchHHHHHHHHHHHHhhcccCeeeeCCCCCCHHHHHHHHHHHHHHhCCCCCCCCEEEEecC-Cchhhhhh-hhcc--
Q psy2050 9 NLKLAGYQLVGLNWLAVMHNQQLCGILADEMGLGKTIQVISFLAYLHEAGLSRPKSPHLIIVPS-STLCKYKV-PSRW-- 84 (131)
Q Consensus 9 ~~~L~~~Q~~~v~~l~~~~~~~~g~ilad~mGlGKT~~~ia~l~~~~~~~~~~~~~~~LIv~P~-sl~~~W~~-~~~~-- 84 (131)
..+|++||.+++.++. .+..+++++++|.|||.+++..+......+ ..++||+||. +++.||.+ +++|
T Consensus 111 ~~~l~~~Q~~ai~~~~----~~~~~ll~~~tGsGKT~~~~~~~~~~~~~~----~~~vlvl~P~~~L~~Q~~~~~~~~~~ 182 (510)
T 2oca_A 111 RIEPHWYQKDAVFEGL----VNRRRILNLPTSAGRSLIQALLARYYLENY----EGKILIIVPTTALTTQMADDFVDYRL 182 (510)
T ss_dssp EECCCHHHHHHHHHHH----HHSEEEEECCSTTTHHHHHHHHHHHHHHHC----SSEEEEEESSHHHHHHHHHHHHHTTS
T ss_pred CCCCCHHHHHHHHHHH----hcCCcEEEeCCCCCHHHHHHHHHHHHHhCC----CCeEEEEECcHHHHHHHHHHHHHhhc
Confidence 5589999999999887 446789999999999999987766555433 3599999996 68899999 9999
Q ss_pred cCCCceeeccCCCcchhhhhhcCccCCCCCCCCCCCcEEEEcccc
Q psy2050 85 RTSNCDKTSPVKPQTITVAQLRVPECDQSPSQEVGYNDIIMYLNI 129 (131)
Q Consensus 85 ~p~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~VvIttY~~ 129 (131)
.+..++....++...... ...+.+|+|+||+.
T Consensus 183 ~~~~~v~~~~~~~~~~~~-------------~~~~~~I~i~T~~~ 214 (510)
T 2oca_A 183 FSHAMIKKIGGGASKDDK-------------YKNDAPVVVGTWQT 214 (510)
T ss_dssp SCGGGEEECGGGCCTTGG-------------GCTTCSEEEEEHHH
T ss_pred CCccceEEEecCCccccc-------------cccCCcEEEEeHHH
Confidence 566666665544332111 01247899999863
No 12
>3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus}
Probab=99.35 E-value=3.9e-12 Score=104.10 Aligned_cols=81 Identities=16% Similarity=0.096 Sum_probs=54.2
Q ss_pred CCCCCcchHHHHHHHHHHHHhhccc-CeeeeCCCCCCHHHHHHHHHHHHHHhCCC----CCCCCEEEEec-CCchhhhh-
Q psy2050 7 ARNLKLAGYQLVGLNWLAVMHNQQL-CGILADEMGLGKTIQVISFLAYLHEAGLS----RPKSPHLIIVP-SSTLCKYK- 79 (131)
Q Consensus 7 ~~~~~L~~~Q~~~v~~l~~~~~~~~-g~ilad~mGlGKT~~~ia~l~~~~~~~~~----~~~~~~LIv~P-~sl~~~W~- 79 (131)
+.+..|++||.+++.++......+. ++++++++|.|||++++.++..+...+.. ....++||+|| .+++.||.
T Consensus 174 ~~~~~lr~~Q~~ai~~~~~~~~~~~~~~ll~~~TGsGKT~~~~~~~~~l~~~~~~~~~~~~~~~vlil~P~~~L~~Q~~~ 253 (590)
T 3h1t_A 174 VSGYSPRYYQQIAINRAVQSVLQGKKRSLITMATGTGKTVVAFQISWKLWSARWNRTGDYRKPRILFLADRNVLVDDPKD 253 (590)
T ss_dssp C----CCHHHHHHHHHHHHHHHTTCSEEEEEECTTSCHHHHHHHHHHHHHHTTCCSSCSSSCCCEEEEEC----------
T ss_pred cCCCCchHHHHHHHHHHHHHHhcCCCceEEEecCCCChHHHHHHHHHHHHhcccccccccCCCeEEEEeCCHHHHHHHHH
Confidence 3456899999999999987665554 57999999999999999988777665410 12588999999 78899999
Q ss_pred h-hhcccCC
Q psy2050 80 V-PSRWRTS 87 (131)
Q Consensus 80 ~-~~~~~p~ 87 (131)
+ +++|.+.
T Consensus 254 ~~~~~~~~~ 262 (590)
T 3h1t_A 254 KTFTPFGDA 262 (590)
T ss_dssp -CCTTTCSS
T ss_pred HHHHhcchh
Confidence 7 9988664
No 13
>4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens}
Probab=99.35 E-value=4.8e-13 Score=110.94 Aligned_cols=110 Identities=13% Similarity=-0.005 Sum_probs=75.5
Q ss_pred CCCCCCcchHHHHHHHHHHHHhhcccCeeeeCCCCCCHHHHHHHHHHHHHHhCC-CCCCCCEEEEecC-Cchhhh-hh-h
Q psy2050 6 KARNLKLAGYQLVGLNWLAVMHNQQLCGILADEMGLGKTIQVISFLAYLHEAGL-SRPKSPHLIIVPS-STLCKY-KV-P 81 (131)
Q Consensus 6 ~~~~~~L~~~Q~~~v~~l~~~~~~~~g~ilad~mGlGKT~~~ia~l~~~~~~~~-~~~~~~~LIv~P~-sl~~~W-~~-~ 81 (131)
++..++|++||.+++.++. .+..+++++++|+|||++++..+......+. .....++|||+|. +|+.|| .+ +
T Consensus 2 ~~~~~~l~~~Q~~~i~~il----~g~~~ll~~~TGsGKTl~~~~~i~~~l~~~~~~~~~~~vlvl~P~~~L~~Q~~~~~l 77 (699)
T 4gl2_A 2 PGAMLQLRPYQMEVAQPAL----EGKNIIICLPTGCGKTRVAVYIAKDHLDKKKKASEPGKVIVLVNKVLLVEQLFRKEF 77 (699)
T ss_dssp -----CCCHHHHHHHHHHH----SSCCEEECCCTTSCHHHHHHHHHHHHHHHHHHHTCCCCBCCEESCSHHHHHHHHHTH
T ss_pred CCCCCCccHHHHHHHHHHH----hCCCEEEEcCCCCcHHHHHHHHHHHHHHhccccCCCCeEEEEECCHHHHHHHHHHHH
Confidence 4567899999999999988 6778999999999999999887765433221 0113789999996 588999 99 9
Q ss_pred hcccCC-CceeeccCCCcchhh-hhhcCccCCCCCCCCCCCcEEEEccccC
Q psy2050 82 SRWRTS-NCDKTSPVKPQTITV-AQLRVPECDQSPSQEVGYNDIIMYLNIP 130 (131)
Q Consensus 82 ~~~~p~-~~v~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~VvIttY~~~ 130 (131)
+++++. .++..+.++...... .... .+.+|||+|+..+
T Consensus 78 ~~~~~~~~~v~~~~g~~~~~~~~~~~~-----------~~~~Ilv~Tp~~L 117 (699)
T 4gl2_A 78 QPFLKKWYRVIGLSGDTQLKISFPEVV-----------KSCDIIISTAQIL 117 (699)
T ss_dssp HHHHTTTSCEEEEC----CCCCHHHHH-----------HSCSEEEEEHHHH
T ss_pred HHHcCcCceEEEEeCCcchhhHHHhhh-----------cCCCEEEECHHHH
Confidence 999987 777776665433211 1111 1478999998753
No 14
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos}
Probab=99.35 E-value=2.5e-12 Score=108.95 Aligned_cols=106 Identities=12% Similarity=0.012 Sum_probs=77.6
Q ss_pred CCCcchHHHHHHHHHHHHhhcccCeeeeCCCCCCHHHHHHHHHHHHHHhCCCCCCCCEEEEecC-Cchhhhhh-hhcccC
Q psy2050 9 NLKLAGYQLVGLNWLAVMHNQQLCGILADEMGLGKTIQVISFLAYLHEAGLSRPKSPHLIIVPS-STLCKYKV-PSRWRT 86 (131)
Q Consensus 9 ~~~L~~~Q~~~v~~l~~~~~~~~g~ilad~mGlGKT~~~ia~l~~~~~~~~~~~~~~~LIv~P~-sl~~~W~~-~~~~~p 86 (131)
...|++||.+++.++. .+..+++++++|.|||++++..+.............++|||||. .++.||.+ ++++++
T Consensus 246 ~~~l~~~Q~~~i~~~l----~~~~~ll~~~TGsGKTl~~~~~i~~~l~~~~~~~~~~~Lvl~Pt~~L~~Q~~~~~~~~~~ 321 (797)
T 4a2q_A 246 TKKARSYQIELAQPAI----NGKNALICAPTGSGKTFVSILICEHHFQNMPAGRKAKVVFLATKVPVYEQQKNVFKHHFE 321 (797)
T ss_dssp --CCCHHHHHHHHHHH----TTCCEEEECCTTSCHHHHHHHHHHHHHHTCCSSCCCCEEEECSSHHHHHHHHHHHHHHHG
T ss_pred CCCCCHHHHHHHHHHH----hCCCEEEEeCCCChHHHHHHHHHHHHHHhccccCCCeEEEEeCCHHHHHHHHHHHHHhcc
Confidence 5689999999999887 67889999999999999998887766655432235789999995 58999999 999998
Q ss_pred --CCceeeccCCCcchh-hhhhcCccCCCCCCCCCCCcEEEEcccc
Q psy2050 87 --SNCDKTSPVKPQTIT-VAQLRVPECDQSPSQEVGYNDIIMYLNI 129 (131)
Q Consensus 87 --~~~v~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~VvIttY~~ 129 (131)
++++..++++..... ..... .+.+|||+||..
T Consensus 322 ~~~~~v~~~~g~~~~~~~~~~~~-----------~~~~Ivv~Tp~~ 356 (797)
T 4a2q_A 322 RQGYSVQGISGENFSNVSVEKVI-----------EDSDIIVVTPQI 356 (797)
T ss_dssp GGTCCEEEECCC-----CHHHHH-----------HTCSEEEECHHH
T ss_pred cCCceEEEEeCCcchhhhHHHhh-----------CCCCEEEEchHH
Confidence 677777666553221 11111 147899999864
No 15
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=99.34 E-value=3.8e-12 Score=93.93 Aligned_cols=89 Identities=18% Similarity=0.166 Sum_probs=67.6
Q ss_pred CCCCcchHHHHHHHHHHHHhhcccCeeeeCCCCCCHHHHHHHHHHHHHHhCCCCCCCCEEEEecC-Cchhhhhh-hhccc
Q psy2050 8 RNLKLAGYQLVGLNWLAVMHNQQLCGILADEMGLGKTIQVISFLAYLHEAGLSRPKSPHLIIVPS-STLCKYKV-PSRWR 85 (131)
Q Consensus 8 ~~~~L~~~Q~~~v~~l~~~~~~~~g~ilad~mGlGKT~~~ia~l~~~~~~~~~~~~~~~LIv~P~-sl~~~W~~-~~~~~ 85 (131)
...+|++||.+++..+. .+..+++++++|.|||..+++++... ..++||+||. +++.||.+ +++|
T Consensus 90 ~~~~l~~~Q~~ai~~~~----~~~~~ll~~~tG~GKT~~a~~~~~~~--------~~~~liv~P~~~L~~q~~~~~~~~- 156 (237)
T 2fz4_A 90 AEISLRDYQEKALERWL----VDKRGCIVLPTGSGKTHVAMAAINEL--------STPTLIVVPTLALAEQWKERLGIF- 156 (237)
T ss_dssp CCCCCCHHHHHHHHHHT----TTSEEEEEESSSTTHHHHHHHHHHHS--------CSCEEEEESSHHHHHHHHHHHGGG-
T ss_pred CCCCcCHHHHHHHHHHH----hCCCEEEEeCCCCCHHHHHHHHHHHc--------CCCEEEEeCCHHHHHHHHHHHHhC-
Confidence 45689999999998766 44558999999999999998876543 4789999997 78899999 9984
Q ss_pred CCCc-eeeccCCCcchhhhhhcCccCCCCCCCCCCCcEEEEcccc
Q psy2050 86 TSNC-DKTSPVKPQTITVAQLRVPECDQSPSQEVGYNDIIMYLNI 129 (131)
Q Consensus 86 p~~~-v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~VvIttY~~ 129 (131)
+.+ +..+.+.... ..+|+|+||+.
T Consensus 157 -~~~~v~~~~g~~~~-------------------~~~i~v~T~~~ 181 (237)
T 2fz4_A 157 -GEEYVGEFSGRIKE-------------------LKPLTVSTYDS 181 (237)
T ss_dssp -CGGGEEEESSSCBC-------------------CCSEEEEEHHH
T ss_pred -CCCeEEEEeCCCCC-------------------cCCEEEEeHHH
Confidence 334 5555544321 24788888864
No 16
>4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos}
Probab=99.31 E-value=2.2e-12 Score=111.28 Aligned_cols=106 Identities=12% Similarity=0.012 Sum_probs=75.5
Q ss_pred CCCcchHHHHHHHHHHHHhhcccCeeeeCCCCCCHHHHHHHHHHHHHHhCCCCCCCCEEEEecC-Cchhhhhh-hhcccC
Q psy2050 9 NLKLAGYQLVGLNWLAVMHNQQLCGILADEMGLGKTIQVISFLAYLHEAGLSRPKSPHLIIVPS-STLCKYKV-PSRWRT 86 (131)
Q Consensus 9 ~~~L~~~Q~~~v~~l~~~~~~~~g~ilad~mGlGKT~~~ia~l~~~~~~~~~~~~~~~LIv~P~-sl~~~W~~-~~~~~p 86 (131)
..+|++||.+++.++. .+..+++++++|+|||++++..+.............++|||||. .++.||.+ ++++++
T Consensus 246 ~~~~r~~Q~~ai~~il----~g~~~ll~a~TGsGKTl~~~~~i~~~l~~~~~~~~~~vLvl~Pt~~L~~Q~~~~~~~~~~ 321 (936)
T 4a2w_A 246 TKKARSYQIELAQPAI----NGKNALICAPTGSGKTFVSILICEHHFQNMPAGRKAKVVFLATKVPVYEQQKNVFKHHFE 321 (936)
T ss_dssp --CCCHHHHHHHHHHH----TTCCEEEECCTTSCHHHHHHHHHHTTTTTCCSSCCCCEEEECSSHHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHH----cCCCEEEEeCCCchHHHHHHHHHHHHHHhccccCCCeEEEEeCCHHHHHHHHHHHHHHhc
Confidence 6789999999999987 67889999999999999988776654443322225789999996 58999999 999997
Q ss_pred --CCceeeccCCCcchh-hhhhcCccCCCCCCCCCCCcEEEEcccc
Q psy2050 87 --SNCDKTSPVKPQTIT-VAQLRVPECDQSPSQEVGYNDIIMYLNI 129 (131)
Q Consensus 87 --~~~v~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~VvIttY~~ 129 (131)
++++..++++..... ..... .+++|||+||..
T Consensus 322 ~~~~~v~~~~G~~~~~~~~~~~~-----------~~~~IvI~Tp~~ 356 (936)
T 4a2w_A 322 RQGYSVQGISGENFSNVSVEKVI-----------EDSDIIVVTPQI 356 (936)
T ss_dssp TTTCCEEEECCC-----CCHHHH-----------HHCSEEEECHHH
T ss_pred ccCceEEEEECCcchhhHHHHhc-----------cCCCEEEecHHH
Confidence 567776666543211 11111 136899999875
No 17
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=99.28 E-value=1.8e-11 Score=87.12 Aligned_cols=105 Identities=11% Similarity=-0.035 Sum_probs=74.4
Q ss_pred CCcchHHHHHHHHHHHHhhcccCeeeeCCCCCCHHHHHHHHHHHHHHhCC-CCCCCCEEEEecC-Cchhhhhh-hhcccC
Q psy2050 10 LKLAGYQLVGLNWLAVMHNQQLCGILADEMGLGKTIQVISFLAYLHEAGL-SRPKSPHLIIVPS-STLCKYKV-PSRWRT 86 (131)
Q Consensus 10 ~~L~~~Q~~~v~~l~~~~~~~~g~ilad~mGlGKT~~~ia~l~~~~~~~~-~~~~~~~LIv~P~-sl~~~W~~-~~~~~p 86 (131)
..+++||.+++..+. .++..++..++|.|||+.++..+........ .....++||+||. .++.||.+ ++++.+
T Consensus 22 ~~~~~~Q~~~i~~~~----~~~~~li~~~TGsGKT~~~~~~~~~~l~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~ 97 (207)
T 2gxq_A 22 TTPTPIQAAALPLAL----EGKDLIGQARTGTGKTLAFALPIAERLAPSQERGRKPRALVLTPTRELALQVASELTAVAP 97 (207)
T ss_dssp CSCCHHHHHHHHHHH----TTCCEEEECCTTSCHHHHHHHHHHHHCCCCCCTTCCCSEEEECSSHHHHHHHHHHHHHHCT
T ss_pred CCCCHHHHHHHHHHc----CCCCEEEECCCCChHHHHHHHHHHHHHhhccccCCCCcEEEEECCHHHHHHHHHHHHHHhh
Confidence 378999999998887 6778999999999999986655544332211 1124679999997 78899999 999998
Q ss_pred CCceeeccCCCcchhhhhhcCccCCCCCCCCCCCcEEEEccc
Q psy2050 87 SNCDKTSPVKPQTITVAQLRVPECDQSPSQEVGYNDIIMYLN 128 (131)
Q Consensus 87 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~VvIttY~ 128 (131)
..++....++......... ... +.+|+|+|++
T Consensus 98 ~~~~~~~~~~~~~~~~~~~-~~~---------~~~i~v~T~~ 129 (207)
T 2gxq_A 98 HLKVVAVYGGTGYGKQKEA-LLR---------GADAVVATPG 129 (207)
T ss_dssp TSCEEEECSSSCSHHHHHH-HHH---------CCSEEEECHH
T ss_pred cceEEEEECCCChHHHHHH-hhC---------CCCEEEECHH
Confidence 8887775555433211111 111 4689999975
No 18
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=99.27 E-value=6.5e-12 Score=89.55 Aligned_cols=109 Identities=13% Similarity=-0.008 Sum_probs=74.3
Q ss_pred CCCCCcchHHHHHHHHHHHHhhcccCeeeeCCCCCCHHHHHHHHHHHHHHhCC-CCCCCCEEEEecC-Cchhh-hhh-hh
Q psy2050 7 ARNLKLAGYQLVGLNWLAVMHNQQLCGILADEMGLGKTIQVISFLAYLHEAGL-SRPKSPHLIIVPS-STLCK-YKV-PS 82 (131)
Q Consensus 7 ~~~~~L~~~Q~~~v~~l~~~~~~~~g~ilad~mGlGKT~~~ia~l~~~~~~~~-~~~~~~~LIv~P~-sl~~~-W~~-~~ 82 (131)
.....|++||.+++..+. .+..+++..++|.|||+.++..+........ .....++||+||. .++.| |.+ ++
T Consensus 29 ~~~~~l~~~Q~~~i~~~~----~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~lil~p~~~L~~q~~~~~~~ 104 (216)
T 3b6e_A 29 EPELQLRPYQMEVAQPAL----EGKNIIICLPTGSGKTRVAVYIAKDHLDKKKKASEPGKVIVLVNKVLLVEQLFRKEFQ 104 (216)
T ss_dssp SCCCCCCHHHHHHHHHHH----TTCCEEEECSCHHHHHHHHHHHHHHHHHHHHHTTCCCCEEEEESSHHHHHHHHHHTHH
T ss_pred cCCCCchHHHHHHHHHHh----cCCCEEEEcCCCCCHHHHHHHHHHHHHhhcccccCCCcEEEEECHHHHHHHHHHHHHH
Confidence 456789999999999887 5678999999999999999887765433211 1114789999997 56788 988 99
Q ss_pred cccCC-CceeeccCCCcchhhhhhcCccCCCCCCCCCCCcEEEEcccc
Q psy2050 83 RWRTS-NCDKTSPVKPQTITVAQLRVPECDQSPSQEVGYNDIIMYLNI 129 (131)
Q Consensus 83 ~~~p~-~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~VvIttY~~ 129 (131)
++.+. .++....++.......... . .+.+|+|+||+.
T Consensus 105 ~~~~~~~~v~~~~g~~~~~~~~~~~-~---------~~~~i~v~T~~~ 142 (216)
T 3b6e_A 105 PFLKKWYRVIGLSGDTQLKISFPEV-V---------KSCDIIISTAQI 142 (216)
T ss_dssp HHHTTTSCEEECCC---CCCCHHHH-H---------HHCSEEEEEHHH
T ss_pred HHhccCceEEEEeCCcccchhHHhh-c---------cCCCEEEECHHH
Confidence 98764 5666655543221110000 0 136799998864
No 19
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=99.27 E-value=1.4e-11 Score=94.90 Aligned_cols=104 Identities=8% Similarity=-0.097 Sum_probs=73.1
Q ss_pred CcchHHHHHHHHHHHHhhcccCeeeeCCCCCCHHHHHHHHHHHHHHhCCCCCCCCEEEEecC-Cchhhhhh-hhccc---
Q psy2050 11 KLAGYQLVGLNWLAVMHNQQLCGILADEMGLGKTIQVISFLAYLHEAGLSRPKSPHLIIVPS-STLCKYKV-PSRWR--- 85 (131)
Q Consensus 11 ~L~~~Q~~~v~~l~~~~~~~~g~ilad~mGlGKT~~~ia~l~~~~~~~~~~~~~~~LIv~P~-sl~~~W~~-~~~~~--- 85 (131)
.+++||++++.++. .+..++++.++|.|||+.++..+......... ..++||+||. .++.||.+ ++++.
T Consensus 30 ~~~~~Q~~~i~~~~----~~~~~lv~a~TGsGKT~~~~~~~~~~l~~~~~--~~~~lil~P~~~L~~q~~~~~~~~~~~~ 103 (391)
T 1xti_A 30 HPSEVQHECIPQAI----LGMDVLCQAKSGMGKTAVFVLATLQQLEPVTG--QVSVLVMCHTRELAFQISKEYERFSKYM 103 (391)
T ss_dssp SCCHHHHHHHHHHT----TTCCEEEECSSCSSHHHHHHHHHHHHCCCCTT--CCCEEEECSCHHHHHHHHHHHHHHTTTC
T ss_pred CCCHHHHHHHHHHh----cCCcEEEECCCCCcHHHHHHHHHHHhhcccCC--CeeEEEECCCHHHHHHHHHHHHHHHhhC
Confidence 49999999998887 66789999999999999887666544332222 4689999997 78899999 88886
Q ss_pred CCCceeeccCCCcchhhhhhcCccCCCCCCCCCCCcEEEEcccc
Q psy2050 86 TSNCDKTSPVKPQTITVAQLRVPECDQSPSQEVGYNDIIMYLNI 129 (131)
Q Consensus 86 p~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~VvIttY~~ 129 (131)
|+.++....++.........- .. ...+|+|+|++.
T Consensus 104 ~~~~~~~~~g~~~~~~~~~~~-~~--------~~~~iiv~T~~~ 138 (391)
T 1xti_A 104 PNVKVAVFFGGLSIKKDEEVL-KK--------NCPHIVVGTPGR 138 (391)
T ss_dssp TTCCEEEECTTSCHHHHHHHH-HH--------SCCSEEEECHHH
T ss_pred CCeEEEEEeCCCCHHHHHHHH-hc--------CCCCEEEECHHH
Confidence 467777666554322111110 00 125899999864
No 20
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=99.23 E-value=4.3e-11 Score=86.20 Aligned_cols=106 Identities=8% Similarity=-0.081 Sum_probs=73.4
Q ss_pred CCCC-cchHHHHHHHHHHHHhhcccCeeeeCCCCCCHHHHHHHHHHHHHHhCCCCCCCCEEEEecC-Cchhhhhh-hhcc
Q psy2050 8 RNLK-LAGYQLVGLNWLAVMHNQQLCGILADEMGLGKTIQVISFLAYLHEAGLSRPKSPHLIIVPS-STLCKYKV-PSRW 84 (131)
Q Consensus 8 ~~~~-L~~~Q~~~v~~l~~~~~~~~g~ilad~mGlGKT~~~ia~l~~~~~~~~~~~~~~~LIv~P~-sl~~~W~~-~~~~ 84 (131)
.++. +++||.+++..+. .+...++..++|.|||+.++..+........ ...++||+||. .++.||.+ ++++
T Consensus 32 ~g~~~~~~~Q~~~i~~~~----~~~~~li~~~TGsGKT~~~~~~~~~~~~~~~--~~~~~lil~Pt~~L~~q~~~~~~~~ 105 (220)
T 1t6n_A 32 CGFEHPSEVQHECIPQAI----LGMDVLCQAKSGMGKTAVFVLATLQQLEPVT--GQVSVLVMCHTRELAFQISKEYERF 105 (220)
T ss_dssp TTCCCCCHHHHHHHHHHH----TTCCEEEECCTTSCHHHHHHHHHHHHCCCCT--TCCCEEEECSCHHHHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHh----CCCCEEEECCCCCchhhhhhHHHHHhhhccC--CCEEEEEEeCCHHHHHHHHHHHHHH
Confidence 3444 9999999998887 5677999999999999887766654433221 13589999996 78899999 8888
Q ss_pred c---CCCceeeccCCCcchh-hhhhcCccCCCCCCCCCCCcEEEEcccc
Q psy2050 85 R---TSNCDKTSPVKPQTIT-VAQLRVPECDQSPSQEVGYNDIIMYLNI 129 (131)
Q Consensus 85 ~---p~~~v~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~VvIttY~~ 129 (131)
. ++.++....++..... ..... . ...+|+|+|++.
T Consensus 106 ~~~~~~~~v~~~~g~~~~~~~~~~~~--~--------~~~~i~v~T~~~ 144 (220)
T 1t6n_A 106 SKYMPNVKVAVFFGGLSIKKDEEVLK--K--------NCPHIVVGTPGR 144 (220)
T ss_dssp TTTSTTCCEEEESCCSCHHHHHHHHH--H--------SCCSEEEECHHH
T ss_pred HhhCCCceEEEEeCCCChHHHHHHHh--c--------CCCCEEEeCHHH
Confidence 6 4667776665543221 11111 0 125899999753
No 21
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=99.22 E-value=5e-11 Score=89.78 Aligned_cols=95 Identities=11% Similarity=0.007 Sum_probs=69.9
Q ss_pred CcchHHHHHHHHHHHHhhcccCeeeeCCCCCCHHHHHHHHHHHHHHhCCCCCCCCEEEEecC-Cchhhhhh-hhcccCC-
Q psy2050 11 KLAGYQLVGLNWLAVMHNQQLCGILADEMGLGKTIQVISFLAYLHEAGLSRPKSPHLIIVPS-STLCKYKV-PSRWRTS- 87 (131)
Q Consensus 11 ~L~~~Q~~~v~~l~~~~~~~~g~ilad~mGlGKT~~~ia~l~~~~~~~~~~~~~~~LIv~P~-sl~~~W~~-~~~~~p~- 87 (131)
+|++||++++.++. +++.+++..++|.|||+.++..+... ..++|||||. .++.||.+ ++++.+.
T Consensus 16 ~l~~~Q~~~i~~i~----~~~~~lv~~~TGsGKT~~~~~~~~~~--------~~~~liv~P~~~L~~q~~~~~~~~~~~~ 83 (337)
T 2z0m_A 16 NFTEVQSKTIPLML----QGKNVVVRAKTGSGKTAAYAIPILEL--------GMKSLVVTPTRELTRQVASHIRDIGRYM 83 (337)
T ss_dssp SCCHHHHHHHHHHH----TTCCEEEECCTTSSHHHHHHHHHHHH--------TCCEEEECSSHHHHHHHHHHHHHHTTTS
T ss_pred CCCHHHHHHHHHHh----cCCCEEEEcCCCCcHHHHHHHHHHhh--------cCCEEEEeCCHHHHHHHHHHHHHHhhhc
Confidence 58999999999888 67789999999999999877665432 4789999996 68899999 9988754
Q ss_pred -CceeeccCCCcchh-hhhhcCccCCCCCCCCCCCcEEEEcccc
Q psy2050 88 -NCDKTSPVKPQTIT-VAQLRVPECDQSPSQEVGYNDIIMYLNI 129 (131)
Q Consensus 88 -~~v~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~VvIttY~~ 129 (131)
.++....++..... ..... +.+|+|+|++.
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~------------~~~i~v~T~~~ 115 (337)
T 2z0m_A 84 DTKVAEVYGGMPYKAQINRVR------------NADIVVATPGR 115 (337)
T ss_dssp CCCEEEECTTSCHHHHHHHHT------------TCSEEEECHHH
T ss_pred CCcEEEEECCcchHHHHhhcC------------CCCEEEECHHH
Confidence 44544444433221 11111 36899999864
No 22
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=99.17 E-value=1.1e-10 Score=90.34 Aligned_cols=103 Identities=14% Similarity=-0.022 Sum_probs=71.9
Q ss_pred CcchHHHHHHHHHHHHhhcccCeeeeCCCCCCHHHHHHHHHHHHHHhCCCCCCCCEEEEecC-Cchhhhhh-hhcccCC-
Q psy2050 11 KLAGYQLVGLNWLAVMHNQQLCGILADEMGLGKTIQVISFLAYLHEAGLSRPKSPHLIIVPS-STLCKYKV-PSRWRTS- 87 (131)
Q Consensus 11 ~L~~~Q~~~v~~l~~~~~~~~g~ilad~mGlGKT~~~ia~l~~~~~~~~~~~~~~~LIv~P~-sl~~~W~~-~~~~~p~- 87 (131)
.+++||.+++.++. .+...++..++|.|||+.++..+......... ..++||+||. .++.||.+ ++++.+.
T Consensus 43 ~~~~~Q~~~i~~i~----~~~~~li~a~TGsGKT~~~~~~~~~~~~~~~~--~~~~lil~P~~~L~~q~~~~~~~~~~~~ 116 (400)
T 1s2m_A 43 KPSPIQEEAIPVAI----TGRDILARAKNGTGKTAAFVIPTLEKVKPKLN--KIQALIMVPTRELALQTSQVVRTLGKHC 116 (400)
T ss_dssp SCCHHHHHHHHHHH----HTCCEEEECCTTSCHHHHHHHHHHHHCCTTSC--SCCEEEECSSHHHHHHHHHHHHHHTTTT
T ss_pred CCCHHHHHHHHHHh----cCCCEEEECCCCcHHHHHHHHHHHHHHhhccC--CccEEEEcCCHHHHHHHHHHHHHHhccc
Confidence 49999999999888 56779999999999999877665544332222 4689999996 67889999 9998865
Q ss_pred -CceeeccCCCcchhhhhhcCccCCCCCCCCCCCcEEEEcccc
Q psy2050 88 -NCDKTSPVKPQTITVAQLRVPECDQSPSQEVGYNDIIMYLNI 129 (131)
Q Consensus 88 -~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~VvIttY~~ 129 (131)
.++....++....... ... ..+.+|+|+|++.
T Consensus 117 ~~~~~~~~g~~~~~~~~-~~~---------~~~~~Ivv~T~~~ 149 (400)
T 1s2m_A 117 GISCMVTTGGTNLRDDI-LRL---------NETVHILVGTPGR 149 (400)
T ss_dssp TCCEEEECSSSCHHHHH-HHT---------TSCCSEEEECHHH
T ss_pred CceEEEEeCCcchHHHH-HHh---------cCCCCEEEEchHH
Confidence 4444444444322111 111 1146899999863
No 23
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=99.15 E-value=2.1e-10 Score=81.54 Aligned_cols=103 Identities=11% Similarity=-0.044 Sum_probs=70.5
Q ss_pred CcchHHHHHHHHHHHHhhcccCeeeeCCCCCCHHHHHHHHHHHHHHhCCCCCCCCEEEEecC-Cchhhhhh-hhcccC--
Q psy2050 11 KLAGYQLVGLNWLAVMHNQQLCGILADEMGLGKTIQVISFLAYLHEAGLSRPKSPHLIIVPS-STLCKYKV-PSRWRT-- 86 (131)
Q Consensus 11 ~L~~~Q~~~v~~l~~~~~~~~g~ilad~mGlGKT~~~ia~l~~~~~~~~~~~~~~~LIv~P~-sl~~~W~~-~~~~~p-- 86 (131)
.+++||.+++..+. .++..++..++|.|||+.++..+........ ...++||+||. .++.||.+ ++++..
T Consensus 25 ~~~~~Q~~~i~~~~----~~~~~lv~apTGsGKT~~~~~~~~~~~~~~~--~~~~~lil~Pt~~L~~q~~~~~~~~~~~~ 98 (206)
T 1vec_A 25 KPSPIQEESIPIAL----SGRDILARAKNGTGKSGAYLIPLLERLDLKK--DNIQAMVIVPTRELALQVSQICIQVSKHM 98 (206)
T ss_dssp SCCHHHHHHHHHHH----TTCCEEEECCSSSTTHHHHHHHHHHHCCTTS--CSCCEEEECSCHHHHHHHHHHHHHHTTTS
T ss_pred CCCHHHHHHHHHHc----cCCCEEEECCCCCchHHHHHHHHHHHhcccC--CCeeEEEEeCcHHHHHHHHHHHHHHHhhc
Confidence 69999999998877 6678999999999999877655443322221 14679999996 67889999 887764
Q ss_pred -CCceeeccCCCcchhhhhhcCccCCCCCCCCCCCcEEEEcccc
Q psy2050 87 -SNCDKTSPVKPQTITVAQLRVPECDQSPSQEVGYNDIIMYLNI 129 (131)
Q Consensus 87 -~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~VvIttY~~ 129 (131)
+.++....++....... ... ..+.+|+|+|++.
T Consensus 99 ~~~~~~~~~g~~~~~~~~-~~~---------~~~~~i~v~T~~~ 132 (206)
T 1vec_A 99 GGAKVMATTGGTNLRDDI-MRL---------DDTVHVVIATPGR 132 (206)
T ss_dssp SSCCEEEECSSSCHHHHH-HHT---------TSCCSEEEECHHH
T ss_pred CCceEEEEeCCccHHHHH-Hhc---------CCCCCEEEeCHHH
Confidence 55666555544322111 111 1146899999853
No 24
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=99.15 E-value=7.3e-11 Score=90.77 Aligned_cols=102 Identities=9% Similarity=-0.046 Sum_probs=71.3
Q ss_pred CCcchHHHHHHHHHHHHhhcccCeeeeCCCCCCHHHHHHHHHHHHHHhCCCCCCCCEEEEecC-Cchhhhhh-hhcccCC
Q psy2050 10 LKLAGYQLVGLNWLAVMHNQQLCGILADEMGLGKTIQVISFLAYLHEAGLSRPKSPHLIIVPS-STLCKYKV-PSRWRTS 87 (131)
Q Consensus 10 ~~L~~~Q~~~v~~l~~~~~~~~g~ilad~mGlGKT~~~ia~l~~~~~~~~~~~~~~~LIv~P~-sl~~~W~~-~~~~~p~ 87 (131)
.++++||++++.++. .+...++..++|.|||+.++..+......... ..++||+||. .++.||.+ +.++.+.
T Consensus 42 ~~~~~~Q~~~i~~i~----~~~~~lv~~~TGsGKT~~~~~~~~~~l~~~~~--~~~~lil~P~~~L~~q~~~~~~~~~~~ 115 (394)
T 1fuu_A 42 EEPSAIQQRAIMPII----EGHDVLAQAQSGTGKTGTFSIAALQRIDTSVK--APQALMLAPTRELALQIQKVVMALAFH 115 (394)
T ss_dssp CSCCHHHHHHHHHHH----HTCCEEECCCSSHHHHHHHHHHHHHHCCTTCC--SCCEEEECSSHHHHHHHHHHHHHHTTT
T ss_pred CCCCHHHHHHHHHHh----CCCCEEEECCCCChHHHHHHHHHHHHhhccCC--CCCEEEEcCCHHHHHHHHHHHHHHhcc
Confidence 379999999999888 56778999999999999866554443322222 5789999996 68889999 9998754
Q ss_pred --CceeeccCCCcchh-hhhhcCccCCCCCCCCCCCcEEEEcccc
Q psy2050 88 --NCDKTSPVKPQTIT-VAQLRVPECDQSPSQEVGYNDIIMYLNI 129 (131)
Q Consensus 88 --~~v~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~VvIttY~~ 129 (131)
.++....++..... ..... +.+|+|+|++.
T Consensus 116 ~~~~~~~~~g~~~~~~~~~~~~------------~~~i~v~T~~~ 148 (394)
T 1fuu_A 116 MDIKVHACIGGTSFVEDAEGLR------------DAQIVVGTPGR 148 (394)
T ss_dssp SCCCEEEECSSCCHHHHHHHHH------------HCSEEEECHHH
T ss_pred CCeeEEEEeCCCchHHHHhhcC------------CCCEEEECHHH
Confidence 45555554443221 11111 36799998764
No 25
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=99.14 E-value=5.8e-11 Score=90.25 Aligned_cols=101 Identities=12% Similarity=0.001 Sum_probs=71.0
Q ss_pred CcchHHHHHHHHHHHHhhcccCeeeeCCCCCCHHHHHHHHHHHHHHhCCCCCCCCEEEEecC-Cchhhhhh-hhcccCC-
Q psy2050 11 KLAGYQLVGLNWLAVMHNQQLCGILADEMGLGKTIQVISFLAYLHEAGLSRPKSPHLIIVPS-STLCKYKV-PSRWRTS- 87 (131)
Q Consensus 11 ~L~~~Q~~~v~~l~~~~~~~~g~ilad~mGlGKT~~~ia~l~~~~~~~~~~~~~~~LIv~P~-sl~~~W~~-~~~~~p~- 87 (131)
.+++||++++..+.. .+...++..++|.|||+.++..+........ ..++||+||. .++.||.+ +.++.+.
T Consensus 28 ~~~~~Q~~~i~~~~~---~~~~~l~~~~TGsGKT~~~~~~~~~~~~~~~---~~~~lil~P~~~L~~q~~~~~~~~~~~~ 101 (367)
T 1hv8_A 28 KPTDIQMKVIPLFLN---DEYNIVAQARTGSGKTASFAIPLIELVNENN---GIEAIILTPTRELAIQVADEIESLKGNK 101 (367)
T ss_dssp SCCHHHHHHHHHHHH---TCSEEEEECCSSSSHHHHHHHHHHHHSCSSS---SCCEEEECSCHHHHHHHHHHHHHHHCSS
T ss_pred CCCHHHHHHHHHHhC---CCCCEEEECCCCChHHHHHHHHHHHHhcccC---CCcEEEEcCCHHHHHHHHHHHHHHhCCC
Confidence 699999999988873 3357888999999999998876655543321 4789999996 67899999 9998765
Q ss_pred -CceeeccCCCcchh-hhhhcCccCCCCCCCCCCCcEEEEcccc
Q psy2050 88 -NCDKTSPVKPQTIT-VAQLRVPECDQSPSQEVGYNDIIMYLNI 129 (131)
Q Consensus 88 -~~v~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~VvIttY~~ 129 (131)
.++....++..... ..... +.+|+|+||+.
T Consensus 102 ~~~v~~~~~~~~~~~~~~~~~------------~~~iiv~T~~~ 133 (367)
T 1hv8_A 102 NLKIAKIYGGKAIYPQIKALK------------NANIVVGTPGR 133 (367)
T ss_dssp CCCEEEECTTSCHHHHHHHHH------------TCSEEEECHHH
T ss_pred CceEEEEECCcchHHHHhhcC------------CCCEEEecHHH
Confidence 44444444333211 11111 36899999864
No 26
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=99.14 E-value=1.9e-10 Score=82.84 Aligned_cols=103 Identities=7% Similarity=-0.111 Sum_probs=67.2
Q ss_pred CCcchHHHHHHHHHHHHhhcccCeeeeCCCCCCHHHHHHHHHHHHHHhCCCCCCCCEEEEecC-Cchhhhhh-hhcccCC
Q psy2050 10 LKLAGYQLVGLNWLAVMHNQQLCGILADEMGLGKTIQVISFLAYLHEAGLSRPKSPHLIIVPS-STLCKYKV-PSRWRTS 87 (131)
Q Consensus 10 ~~L~~~Q~~~v~~l~~~~~~~~g~ilad~mGlGKT~~~ia~l~~~~~~~~~~~~~~~LIv~P~-sl~~~W~~-~~~~~p~ 87 (131)
..+++||.+++..+. .++..++..++|.|||+..+..+........ ...++||++|. .++.||.+ +.++...
T Consensus 35 ~~~~~~Q~~~i~~~~----~~~~~lv~~pTGsGKT~~~~~~~l~~l~~~~--~~~~~lil~Pt~~L~~q~~~~~~~~~~~ 108 (224)
T 1qde_A 35 EEPSAIQQRAIMPII----EGHDVLAQAQSGTGKTGTFSIAALQRIDTSV--KAPQALMLAPTRELALQIQKVVMALAFH 108 (224)
T ss_dssp CSCCHHHHHHHHHHH----TTCCEEEECCTTSSHHHHHHHHHHHHCCTTC--CSCCEEEECSSHHHHHHHHHHHHHHTTT
T ss_pred CCCcHHHHHHHHHHh----cCCCEEEECCCCCcHHHHHHHHHHHHHhccC--CCceEEEEECCHHHHHHHHHHHHHHhcc
Confidence 368999999998877 6678999999999999885443333222211 14689999996 67889999 9998764
Q ss_pred --CceeeccCCCcchhhhhhcCccCCCCCCCCCCCcEEEEcccc
Q psy2050 88 --NCDKTSPVKPQTITVAQLRVPECDQSPSQEVGYNDIIMYLNI 129 (131)
Q Consensus 88 --~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~VvIttY~~ 129 (131)
.++....++...... ... ..+.+|+|+|++.
T Consensus 109 ~~~~~~~~~g~~~~~~~--~~~---------~~~~~iiv~Tp~~ 141 (224)
T 1qde_A 109 MDIKVHACIGGTSFVED--AEG---------LRDAQIVVGTPGR 141 (224)
T ss_dssp SCCCEEEECC---------------------CTTCSEEEECHHH
T ss_pred cCceEEEEeCCcchHHH--Hhc---------CCCCCEEEECHHH
Confidence 444444443322110 000 1136899999764
No 27
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=99.11 E-value=1.6e-10 Score=89.73 Aligned_cols=74 Identities=14% Similarity=0.056 Sum_probs=58.3
Q ss_pred CcchHHHHHHHHHHHHhhcccCeeeeCCCCCCHHHHHHHHHHHHHHhCCCCCCCCEEEEecC-Cchhhhhh-hhcccCCC
Q psy2050 11 KLAGYQLVGLNWLAVMHNQQLCGILADEMGLGKTIQVISFLAYLHEAGLSRPKSPHLIIVPS-STLCKYKV-PSRWRTSN 88 (131)
Q Consensus 11 ~L~~~Q~~~v~~l~~~~~~~~g~ilad~mGlGKT~~~ia~l~~~~~~~~~~~~~~~LIv~P~-sl~~~W~~-~~~~~p~~ 88 (131)
++++||.+++.++. .++..++..++|.|||+..+..+........ ...++||+||. .++.||.+ +.++....
T Consensus 59 ~~~~~Q~~ai~~i~----~~~~~lv~a~TGsGKT~~~~~~~~~~l~~~~--~~~~~lil~Pt~~L~~q~~~~~~~~~~~~ 132 (410)
T 2j0s_A 59 KPSAIQQRAIKQII----KGRDVIAQSQSGTGKTATFSISVLQCLDIQV--RETQALILAPTRELAVQIQKGLLALGDYM 132 (410)
T ss_dssp SCCHHHHHHHHHHH----TTCCEEEECCTTSSHHHHHHHHHHHTCCTTS--CSCCEEEECSSHHHHHHHHHHHHHHTTTT
T ss_pred CCCHHHHHHHHHHh----CCCCEEEECCCCCCchHHHHHHHHHHHhhcc--CCceEEEEcCcHHHHHHHHHHHHHHhccC
Confidence 48999999999988 6778999999999999988766554432222 25789999996 57889999 99987654
Q ss_pred ce
Q psy2050 89 CD 90 (131)
Q Consensus 89 ~v 90 (131)
.+
T Consensus 133 ~~ 134 (410)
T 2j0s_A 133 NV 134 (410)
T ss_dssp TC
T ss_pred Ce
Confidence 43
No 28
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=99.10 E-value=4e-10 Score=83.28 Aligned_cols=102 Identities=15% Similarity=-0.044 Sum_probs=71.5
Q ss_pred CcchHHHHHHHHHHHHhhcccCeeeeCCCCCCHHHHHHHHHHHHHHhCCCCCCCCEEEEecC-Cchhhhhh-hhcccCC-
Q psy2050 11 KLAGYQLVGLNWLAVMHNQQLCGILADEMGLGKTIQVISFLAYLHEAGLSRPKSPHLIIVPS-STLCKYKV-PSRWRTS- 87 (131)
Q Consensus 11 ~L~~~Q~~~v~~l~~~~~~~~g~ilad~mGlGKT~~~ia~l~~~~~~~~~~~~~~~LIv~P~-sl~~~W~~-~~~~~p~- 87 (131)
.+++||.+++..+. .++..++..++|.|||+..+..+......... ..++||++|. .++.||.+ ++++...
T Consensus 65 ~~~~~Q~~~i~~i~----~~~~~lv~a~TGsGKT~~~~~~il~~l~~~~~--~~~~lil~Ptr~L~~q~~~~~~~~~~~~ 138 (249)
T 3ber_A 65 KPTKIQIEAIPLAL----QGRDIIGLAETGSGKTGAFALPILNALLETPQ--RLFALVLTPTRELAFQISEQFEALGSSI 138 (249)
T ss_dssp SCCHHHHHHHHHHH----TTCCEEEECCTTSCHHHHHHHHHHHHHHHSCC--SSCEEEECSSHHHHHHHHHHHHHHHGGG
T ss_pred CCCHHHHHHHHHHh----CCCCEEEEcCCCCCchhHhHHHHHHHHhcCCC--CceEEEEeCCHHHHHHHHHHHHHHhccC
Confidence 78999999998887 67788999999999999876655543333322 4679999996 67889999 9998764
Q ss_pred -CceeeccCCCcchh-hhhhcCccCCCCCCCCCCCcEEEEcccc
Q psy2050 88 -NCDKTSPVKPQTIT-VAQLRVPECDQSPSQEVGYNDIIMYLNI 129 (131)
Q Consensus 88 -~~v~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~VvIttY~~ 129 (131)
.++....++..... ..... .+.+|+|+|++.
T Consensus 139 ~~~~~~~~g~~~~~~~~~~~~-----------~~~~I~v~Tp~~ 171 (249)
T 3ber_A 139 GVQSAVIVGGIDSMSQSLALA-----------KKPHIIIATPGR 171 (249)
T ss_dssp TCCEEEECTTSCHHHHHHHHH-----------TCCSEEEECHHH
T ss_pred CeeEEEEECCCChHHHHHHhc-----------CCCCEEEECHHH
Confidence 45555444433221 11111 146899999764
No 29
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=99.10 E-value=2.2e-10 Score=87.81 Aligned_cols=100 Identities=12% Similarity=-0.009 Sum_probs=69.3
Q ss_pred CCcchHHHHHHHHHHHHhhcc--cCeeeeCCCCCCHHHHHHHHHHHHHHhCCCCCCCCEEEEecC-Cchhhhhh-hhccc
Q psy2050 10 LKLAGYQLVGLNWLAVMHNQQ--LCGILADEMGLGKTIQVISFLAYLHEAGLSRPKSPHLIIVPS-STLCKYKV-PSRWR 85 (131)
Q Consensus 10 ~~L~~~Q~~~v~~l~~~~~~~--~g~ilad~mGlGKT~~~ia~l~~~~~~~~~~~~~~~LIv~P~-sl~~~W~~-~~~~~ 85 (131)
..+++||.+++..+. .+ ...++..++|.|||+.++..+......... ..++||+||. .++.||.+ ++++.
T Consensus 26 ~~~~~~Q~~~i~~~~----~~~~~~~lv~a~TGsGKT~~~~~~~~~~~~~~~~--~~~~lil~P~~~L~~q~~~~~~~~~ 99 (395)
T 3pey_A 26 QKPSKIQERALPLLL----HNPPRNMIAQSQSGTGKTAAFSLTMLTRVNPEDA--SPQAICLAPSRELARQTLEVVQEMG 99 (395)
T ss_dssp CSCCHHHHHHHHHHH----CSSCCCEEEECCTTSCHHHHHHHHHHHHCCTTCC--SCCEEEECSSHHHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHH----cCCCCeEEEECCCCCcHHHHHHHHHHHHhccCCC--CccEEEECCCHHHHHHHHHHHHHHh
Confidence 478999999998887 44 678999999999999887766544332222 5789999996 47889999 99887
Q ss_pred CCC--ceeeccCCCcchhhhhhcCccCCCCCCCCCCCcEEEEcccc
Q psy2050 86 TSN--CDKTSPVKPQTITVAQLRVPECDQSPSQEVGYNDIIMYLNI 129 (131)
Q Consensus 86 p~~--~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~VvIttY~~ 129 (131)
... .+....+..... ....+.+|+|+|++.
T Consensus 100 ~~~~~~~~~~~~~~~~~--------------~~~~~~~iiv~T~~~ 131 (395)
T 3pey_A 100 KFTKITSQLIVPDSFEK--------------NKQINAQVIVGTPGT 131 (395)
T ss_dssp TTSCCCEEEESTTSSCT--------------TSCBCCSEEEECHHH
T ss_pred cccCeeEEEEecCchhh--------------hccCCCCEEEEcHHH
Confidence 443 333333222111 011146899999864
No 30
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=99.10 E-value=4.6e-10 Score=81.61 Aligned_cols=102 Identities=12% Similarity=-0.074 Sum_probs=70.1
Q ss_pred CcchHHHHHHHHHHHHhhcccCeeeeCCCCCCHHHHHHHHHHHHHHhCCCCCCCCEEEEecC-Cchhhhhh-hhcccC--
Q psy2050 11 KLAGYQLVGLNWLAVMHNQQLCGILADEMGLGKTIQVISFLAYLHEAGLSRPKSPHLIIVPS-STLCKYKV-PSRWRT-- 86 (131)
Q Consensus 11 ~L~~~Q~~~v~~l~~~~~~~~g~ilad~mGlGKT~~~ia~l~~~~~~~~~~~~~~~LIv~P~-sl~~~W~~-~~~~~p-- 86 (131)
.+++||.+++..+. .++..++..++|.|||+..+..+........ ...++||+||. .++.||.+ ++++..
T Consensus 46 ~~~~~Q~~~i~~~~----~~~~~l~~a~TGsGKT~~~~l~~l~~l~~~~--~~~~~lil~Pt~~L~~q~~~~~~~~~~~~ 119 (230)
T 2oxc_A 46 RPSPVQLKAIPLGR----CGLDLIVQAKSGTGKTCVFSTIALDSLVLEN--LSTQILILAPTREIAVQIHSVITAIGIKM 119 (230)
T ss_dssp SCCHHHHHHHHHHH----TTCCEEEECCTTSSHHHHHHHHHHHHCCTTS--CSCCEEEECSSHHHHHHHHHHHHHHTTTS
T ss_pred CCCHHHHHHHHHHh----CCCCEEEECCCCCcHHHHHHHHHHHHHHhcC--CCceEEEEeCCHHHHHHHHHHHHHHhccc
Confidence 49999999998877 6778899999999999985544333222111 14689999996 78999999 988863
Q ss_pred -CCceeeccCCCcchhhhhhcCccCCCCCCCCCCCcEEEEcccc
Q psy2050 87 -SNCDKTSPVKPQTITVAQLRVPECDQSPSQEVGYNDIIMYLNI 129 (131)
Q Consensus 87 -~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~VvIttY~~ 129 (131)
+.++....++........ . .. +.+|+|+|++.
T Consensus 120 ~~~~~~~~~g~~~~~~~~~-~-~~---------~~~Iiv~Tp~~ 152 (230)
T 2oxc_A 120 EGLECHVFIGGTPLSQDKT-R-LK---------KCHIAVGSPGR 152 (230)
T ss_dssp TTCCEEEECTTSCHHHHHH-H-TT---------SCSEEEECHHH
T ss_pred CCceEEEEeCCCCHHHHHH-h-cc---------CCCEEEECHHH
Confidence 566666555443221111 1 11 46899999763
No 31
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=99.09 E-value=5.4e-10 Score=81.25 Aligned_cols=104 Identities=12% Similarity=-0.046 Sum_probs=71.2
Q ss_pred CCcchHHHHHHHHHHHHhhcccCeeeeCCCCCCHHHHHHHHHHHHHHh-CCC-CCCCCEEEEecC-Cchhhhhh-hhccc
Q psy2050 10 LKLAGYQLVGLNWLAVMHNQQLCGILADEMGLGKTIQVISFLAYLHEA-GLS-RPKSPHLIIVPS-STLCKYKV-PSRWR 85 (131)
Q Consensus 10 ~~L~~~Q~~~v~~l~~~~~~~~g~ilad~mGlGKT~~~ia~l~~~~~~-~~~-~~~~~~LIv~P~-sl~~~W~~-~~~~~ 85 (131)
..++++|.+++..+. .++..++..++|.|||+..+..+...... ... ....++||+||. .++.||.+ ++++.
T Consensus 46 ~~~~~~Q~~~i~~~~----~~~~~li~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~ 121 (236)
T 2pl3_A 46 RLVTEIQKQTIGLAL----QGKDVLGAAKTGSGKTLAFLVPVLEALYRLQWTSTDGLGVLIISPTRELAYQTFEVLRKVG 121 (236)
T ss_dssp CBCCHHHHHHHHHHH----TTCCEEEECCTTSCHHHHHHHHHHHHHHHTTCCGGGCCCEEEECSSHHHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHh----CCCCEEEEeCCCCcHHHHHHHHHHHHHHhhcccccCCceEEEEeCCHHHHHHHHHHHHHHh
Confidence 368999999999887 67889999999999999876654433222 111 114679999996 78899999 99987
Q ss_pred CC--CceeeccCCCcch-hhhhhcCccCCCCCCCCCCCcEEEEcccc
Q psy2050 86 TS--NCDKTSPVKPQTI-TVAQLRVPECDQSPSQEVGYNDIIMYLNI 129 (131)
Q Consensus 86 p~--~~v~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~VvIttY~~ 129 (131)
.. .++....++.... ...... +.+|+|+|++.
T Consensus 122 ~~~~~~~~~~~g~~~~~~~~~~~~------------~~~iiv~Tp~~ 156 (236)
T 2pl3_A 122 KNHDFSAGLIIGGKDLKHEAERIN------------NINILVCTPGR 156 (236)
T ss_dssp TTSSCCEEEECCC--CHHHHHHHT------------TCSEEEECHHH
T ss_pred CCCCeeEEEEECCCCHHHHHHhCC------------CCCEEEECHHH
Confidence 65 4555544443322 111111 47899999863
No 32
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19
Probab=99.07 E-value=2.7e-10 Score=82.09 Aligned_cols=103 Identities=11% Similarity=-0.056 Sum_probs=69.3
Q ss_pred CCcchHHHHHHHHHHHHhhcccCeeeeCCCCCCHHHHHHHHHHHHHHhCCCCCCCCEEEEecC-Cchhhhhh-hhcccCC
Q psy2050 10 LKLAGYQLVGLNWLAVMHNQQLCGILADEMGLGKTIQVISFLAYLHEAGLSRPKSPHLIIVPS-STLCKYKV-PSRWRTS 87 (131)
Q Consensus 10 ~~L~~~Q~~~v~~l~~~~~~~~g~ilad~mGlGKT~~~ia~l~~~~~~~~~~~~~~~LIv~P~-sl~~~W~~-~~~~~p~ 87 (131)
..+++||.+++..+. .++..++..++|.|||+..+..+......... ..++||+||. .++.||.+ ++++...
T Consensus 25 ~~~~~~Q~~~i~~~~----~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~--~~~~lil~Pt~~L~~q~~~~~~~~~~~ 98 (219)
T 1q0u_A 25 YKPTEIQERIIPGAL----RGESMVGQSQTGTGKTHAYLLPIMEKIKPERA--EVQAVITAPTRELATQIYHETLKITKF 98 (219)
T ss_dssp CSCCHHHHHHHHHHH----HTCCEEEECCSSHHHHHHHHHHHHHHCCTTSC--SCCEEEECSSHHHHHHHHHHHHHHHTT
T ss_pred CCCCHHHHHHHHHHh----CCCCEEEECCCCChHHHHHHHHHHHHHHhCcC--CceEEEEcCcHHHHHHHHHHHHHHhhh
Confidence 468999999998887 56788999999999999866554433322211 4679999996 67889999 8888753
Q ss_pred ------CceeeccCCCcchhhhhhcCccCCCCCCCCCCCcEEEEccc
Q psy2050 88 ------NCDKTSPVKPQTITVAQLRVPECDQSPSQEVGYNDIIMYLN 128 (131)
Q Consensus 88 ------~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~VvIttY~ 128 (131)
.++....++..... ... ....+.+|+|+|++
T Consensus 99 ~~~~~~~~~~~~~g~~~~~~--~~~--------~~~~~~~Iiv~Tp~ 135 (219)
T 1q0u_A 99 CPKDRMIVARCLIGGTDKQK--ALE--------KLNVQPHIVIGTPG 135 (219)
T ss_dssp SCGGGCCCEEEECCCSHHHH--TTC--------CCSSCCSEEEECHH
T ss_pred cccccceEEEEEeCCCCHHH--HHH--------HcCCCCCEEEeCHH
Confidence 44444444332211 111 11125789999975
No 33
>1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19
Probab=99.05 E-value=1.1e-09 Score=80.39 Aligned_cols=104 Identities=10% Similarity=0.030 Sum_probs=71.1
Q ss_pred CcchHHHHHHHHHHHHhhcccCeeeeCCCCCCHHHHHHHHHHHHHHhCCC-------CCCCCEEEEecC-Cchhhhhh-h
Q psy2050 11 KLAGYQLVGLNWLAVMHNQQLCGILADEMGLGKTIQVISFLAYLHEAGLS-------RPKSPHLIIVPS-STLCKYKV-P 81 (131)
Q Consensus 11 ~L~~~Q~~~v~~l~~~~~~~~g~ilad~mGlGKT~~~ia~l~~~~~~~~~-------~~~~~~LIv~P~-sl~~~W~~-~ 81 (131)
.+++||.+++..+. .++..++..++|.|||+..+..+......... ....++||+||. .++.||.+ +
T Consensus 45 ~~~~~Q~~~i~~i~----~~~~~l~~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~ 120 (253)
T 1wrb_A 45 RPTPIQKNAIPAIL----EHRDIMACAQTGSGKTAAFLIPIINHLVCQDLNQQRYSKTAYPKCLILAPTRELAIQILSES 120 (253)
T ss_dssp SCCHHHHHHHHHHH----TTCCEEEECCTTSSHHHHHHHHHHHHHHTTCC------CCBCCSEEEECSSHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHh----CCCCEEEECCCCChHHHHHHHHHHHHHHhhccccccccccCCceEEEEECCHHHHHHHHHHH
Confidence 58999999998887 67788999999999999877655443332211 113579999996 78899999 9
Q ss_pred hcccCC--CceeeccCCCcch-hhhhhcCccCCCCCCCCCCCcEEEEcccc
Q psy2050 82 SRWRTS--NCDKTSPVKPQTI-TVAQLRVPECDQSPSQEVGYNDIIMYLNI 129 (131)
Q Consensus 82 ~~~~p~--~~v~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~VvIttY~~ 129 (131)
+++... .++....++.... ...... .+.+|+|+|++.
T Consensus 121 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~-----------~~~~Ivv~Tp~~ 160 (253)
T 1wrb_A 121 QKFSLNTPLRSCVVYGGADTHSQIREVQ-----------MGCHLLVATPGR 160 (253)
T ss_dssp HHHHTTSSCCEEEECSSSCSHHHHHHHS-----------SCCSEEEECHHH
T ss_pred HHHhccCCceEEEEECCCCHHHHHHHhC-----------CCCCEEEECHHH
Confidence 998765 4444444433322 111111 146899999864
No 34
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=99.04 E-value=7.8e-10 Score=85.62 Aligned_cols=104 Identities=13% Similarity=0.005 Sum_probs=71.4
Q ss_pred CCcchHHHHHHHHHHHHhhcccCeeeeCCCCCCHHHHHHHHHHHHHHhCCCCCCCCEEEEecC-Cchhhhhh-hhcccCC
Q psy2050 10 LKLAGYQLVGLNWLAVMHNQQLCGILADEMGLGKTIQVISFLAYLHEAGLSRPKSPHLIIVPS-STLCKYKV-PSRWRTS 87 (131)
Q Consensus 10 ~~L~~~Q~~~v~~l~~~~~~~~g~ilad~mGlGKT~~~ia~l~~~~~~~~~~~~~~~LIv~P~-sl~~~W~~-~~~~~p~ 87 (131)
..+++||.+++..+. .++..++..++|.|||++++..+......... ..++||++|. .++.||.+ ++++...
T Consensus 61 ~~~~~~Q~~~i~~~~----~~~~~lv~a~TGsGKT~~~~~~~~~~~~~~~~--~~~~lil~P~~~L~~q~~~~~~~~~~~ 134 (414)
T 3eiq_A 61 EKPSAIQQRAILPCI----KGYDVIAQAQSGTGKTATFAISILQQIELDLK--ATQALVLAPTRELAQQIQKVVMALGDY 134 (414)
T ss_dssp CSCCHHHHHHHHHHH----TTCCEEECCCSCSSSHHHHHHHHHHHCCTTSC--SCCEEEECSSHHHHHHHHHHHHHHGGG
T ss_pred CCCCHHHHHHhHHHh----CCCCEEEECCCCCcccHHHHHHHHHHHhhcCC--ceeEEEEeChHHHHHHHHHHHHHHhcc
Confidence 368999999998887 67779999999999999877666544333222 5789999996 57889999 9998754
Q ss_pred --CceeeccCCCcch-hhhhhcCccCCCCCCCCCCCcEEEEcccc
Q psy2050 88 --NCDKTSPVKPQTI-TVAQLRVPECDQSPSQEVGYNDIIMYLNI 129 (131)
Q Consensus 88 --~~v~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~VvIttY~~ 129 (131)
..+....++.... ....... .+.+|+|+|+..
T Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~----------~~~~iiv~T~~~ 169 (414)
T 3eiq_A 135 MGASCHACIGGTNVRAEVQKLQM----------EAPHIIVGTPGR 169 (414)
T ss_dssp SCCCEEECCCCTTHHHHHHHHTT----------TCCSEEEECHHH
T ss_pred cCceEEEEECCcchHHHHHHHhc----------CCCCEEEECHHH
Confidence 3444433333222 1111110 146899999753
No 35
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*
Probab=98.99 E-value=9.8e-10 Score=80.31 Aligned_cols=71 Identities=14% Similarity=0.048 Sum_probs=55.1
Q ss_pred CcchHHHHHHHHHHHHhhcccCeeeeCCCCCCHHHHHHHHHHHHHHhCCCCCCCCEEEEecC-Cchhhhhh-hhcccCC
Q psy2050 11 KLAGYQLVGLNWLAVMHNQQLCGILADEMGLGKTIQVISFLAYLHEAGLSRPKSPHLIIVPS-STLCKYKV-PSRWRTS 87 (131)
Q Consensus 11 ~L~~~Q~~~v~~l~~~~~~~~g~ilad~mGlGKT~~~ia~l~~~~~~~~~~~~~~~LIv~P~-sl~~~W~~-~~~~~p~ 87 (131)
.+++||.+++..+. .+...++..++|.|||+..+..+........ ...++||++|. .++.||.+ ++++...
T Consensus 52 ~~~~~Q~~ai~~i~----~~~~~li~apTGsGKT~~~~l~~l~~l~~~~--~~~~~lil~Pt~~L~~q~~~~~~~~~~~ 124 (237)
T 3bor_A 52 KPSAIQQRAIIPCI----KGYDVIAQAQSGTGKTATFAISILQQLEIEF--KETQALVLAPTRELAQQIQKVILALGDY 124 (237)
T ss_dssp SCCHHHHHHHHHHH----TTCCEEECCCSSHHHHHHHHHHHHHHCCTTS--CSCCEEEECSSHHHHHHHHHHHHHHTTT
T ss_pred CCCHHHHHHHHHHh----CCCCEEEECCCCCcHHHHHHHHHHHHHHhcC--CCceEEEEECcHHHHHHHHHHHHHHhhh
Confidence 48999999998877 6678899999999999886655443332221 14689999996 68889999 9998764
No 36
>2w00_A HSDR, R.ECOR124I; ATP-binding, DNA-binding, restriction system, helicase, HYDR R.ECOR124I, nucleotide-binding; HET: ATP; 2.6A {Escherichia coli} PDB: 2y3t_A* 2w74_B*
Probab=98.92 E-value=3.6e-09 Score=92.31 Aligned_cols=76 Identities=14% Similarity=0.089 Sum_probs=58.7
Q ss_pred CCCcchHHHHHHHHHHHHhhc----------ccCeeeeCCCCCCHHHHHHHHHHHHHHhCCCCCCCCEEEEec-CCchhh
Q psy2050 9 NLKLAGYQLVGLNWLAVMHNQ----------QLCGILADEMGLGKTIQVISFLAYLHEAGLSRPKSPHLIIVP-SSTLCK 77 (131)
Q Consensus 9 ~~~L~~~Q~~~v~~l~~~~~~----------~~g~ilad~mGlGKT~~~ia~l~~~~~~~~~~~~~~~LIv~P-~sl~~~ 77 (131)
...+|+||.+|+..++..... +++|++...+|.|||++++.++. ....... ..++||||| ..|..|
T Consensus 269 ~~~~R~~Q~~AI~~il~~i~~~~~~~~~~~~~~~gli~~~TGSGKT~t~~~l~~-ll~~~~~--~~rvLvlvpr~eL~~Q 345 (1038)
T 2w00_A 269 LLVMRPYQIAATERILWKIKSSFTAKNWSKPESGGYIWHTTGSGKTLTSFKAAR-LATELDF--IDKVFFVVDRKDLDYQ 345 (1038)
T ss_dssp EEECCHHHHHHHHHHHHHHHHHHHHTCCSSGGGSEEEEECTTSSHHHHHHHHHH-HHTTCTT--CCEEEEEECGGGCCHH
T ss_pred cccCCHHHHHHHHHHHHHHHhcccccccccCCCCEEEEecCCCCHHHHHHHHHH-HHHhcCC--CceEEEEeCcHHHHHH
Confidence 356999999999998875432 35799999999999999866553 3322111 368999999 678999
Q ss_pred hhh-hhcccCC
Q psy2050 78 YKV-PSRWRTS 87 (131)
Q Consensus 78 W~~-~~~~~p~ 87 (131)
|.+ |.+|.+.
T Consensus 346 ~~~~f~~f~~~ 356 (1038)
T 2w00_A 346 TMKEYQRFSPD 356 (1038)
T ss_dssp HHHHHHTTSTT
T ss_pred HHHHHHHhccc
Confidence 999 9999875
No 37
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens}
Probab=98.90 E-value=3.3e-09 Score=77.43 Aligned_cols=105 Identities=10% Similarity=0.022 Sum_probs=68.5
Q ss_pred CcchHHHHHHHHHHHHhhcccCeeeeCCCCCCHHHHHHHHHHHHHHhCCCCCCCCEEEEecC-Cchhhhhh-hhcccCCC
Q psy2050 11 KLAGYQLVGLNWLAVMHNQQLCGILADEMGLGKTIQVISFLAYLHEAGLSRPKSPHLIIVPS-STLCKYKV-PSRWRTSN 88 (131)
Q Consensus 11 ~L~~~Q~~~v~~l~~~~~~~~g~ilad~mGlGKT~~~ia~l~~~~~~~~~~~~~~~LIv~P~-sl~~~W~~-~~~~~p~~ 88 (131)
.++++|.+++..+. .++..++....|.|||+..+..+........ .....+||++|. .++.||.+ ++++....
T Consensus 51 ~~~~~Q~~~i~~~~----~~~~~l~~a~TGsGKT~~~~l~~l~~l~~~~-~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~ 125 (245)
T 3dkp_A 51 MPTPIQMQAIPVML----HGRELLASAPTGSGKTLAFSIPILMQLKQPA-NKGFRALIISPTRELASQIHRELIKISEGT 125 (245)
T ss_dssp SCCHHHHHHHHHHH----TTCCEEEECCTTSCHHHHHHHHHHHHHCSCC-SSSCCEEEECSSHHHHHHHHHHHHHHTTTS
T ss_pred CCCHHHHHHHHHHh----CCCCEEEECCCCCcHHHHHHHHHHHHHhhcc-cCCceEEEEeCCHHHHHHHHHHHHHHhccc
Confidence 48999999998877 6777899999999999986554443332211 113579999996 67889999 99987654
Q ss_pred --ceeeccCCCcchhhhhhcCccCCCCCCCCCCCcEEEEcccc
Q psy2050 89 --CDKTSPVKPQTITVAQLRVPECDQSPSQEVGYNDIIMYLNI 129 (131)
Q Consensus 89 --~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~VvIttY~~ 129 (131)
++....+...... .+......+.+|+|+|++.
T Consensus 126 ~~~~~~~~~~~~~~~---------~~~~~~~~~~~I~v~Tp~~ 159 (245)
T 3dkp_A 126 GFRIHMIHKAAVAAK---------KFGPKSSKKFDILVTTPNR 159 (245)
T ss_dssp CCCEECCCHHHHHHT---------TTSTTSCCCCCEEEECHHH
T ss_pred CceEEEEecCccHHH---------HhhhhhcCCCCEEEECHHH
Confidence 3333332221110 0111122357899999653
No 38
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=98.87 E-value=6.7e-09 Score=80.19 Aligned_cols=101 Identities=12% Similarity=-0.025 Sum_probs=67.4
Q ss_pred CCcchHHHHHHHHHHHHhhcc--cCeeeeCCCCCCHHHHHHHHHHHHHHhCCCCCCCCEEEEecC-Cchhhhhh-hhccc
Q psy2050 10 LKLAGYQLVGLNWLAVMHNQQ--LCGILADEMGLGKTIQVISFLAYLHEAGLSRPKSPHLIIVPS-STLCKYKV-PSRWR 85 (131)
Q Consensus 10 ~~L~~~Q~~~v~~l~~~~~~~--~g~ilad~mGlGKT~~~ia~l~~~~~~~~~~~~~~~LIv~P~-sl~~~W~~-~~~~~ 85 (131)
..++++|.+++..+. .+ ...++..++|.|||+.++..+......... ...+||++|. .++.||.+ ++++.
T Consensus 46 ~~~~~~Q~~~i~~~~----~~~~~~~lv~apTGsGKT~~~~~~~~~~~~~~~~--~~~~lil~P~~~L~~q~~~~~~~~~ 119 (412)
T 3fht_A 46 NRPSKIQENALPLML----AEPPQNLIAQSQSGTGKTAAFVLAMLSQVEPANK--YPQCLCLSPTYELALQTGKVIEQMG 119 (412)
T ss_dssp CSCCHHHHHHHHHHH----SSSCCCEEEECCTTSCHHHHHHHHHHHHCCTTSC--SCCEEEECSSHHHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHh----cCCCCeEEEECCCCchHHHHHHHHHHHHhhhcCC--CCCEEEECCCHHHHHHHHHHHHHHH
Confidence 368999999998877 44 678999999999999876655443332222 4589999996 47788877 66654
Q ss_pred ---CCCceeeccCCCcchhhhhhcCccCCCCCCCCCCCcEEEEcccc
Q psy2050 86 ---TSNCDKTSPVKPQTITVAQLRVPECDQSPSQEVGYNDIIMYLNI 129 (131)
Q Consensus 86 ---p~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~VvIttY~~ 129 (131)
++.++....+...... ....+.+|+|+|++.
T Consensus 120 ~~~~~~~~~~~~~~~~~~~-------------~~~~~~~ivv~T~~~ 153 (412)
T 3fht_A 120 KFYPELKLAYAVRGNKLER-------------GQKISEQIVIGTPGT 153 (412)
T ss_dssp TTSTTCCEEEECTTCCCCT-------------TCCCCCSEEEECHHH
T ss_pred hhcccceEEEeecCcchhh-------------hhcCCCCEEEECchH
Confidence 5556655443332110 011246899998764
No 39
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=98.83 E-value=1.1e-08 Score=79.86 Aligned_cols=105 Identities=12% Similarity=0.041 Sum_probs=72.1
Q ss_pred CCCcchHHHHHHHHHHHHhhcccCeeeeCCCCCCHHHHHHHHHHHHHHhCCCCCCCCEEEEecC-Cchhhhhh-hhcccC
Q psy2050 9 NLKLAGYQLVGLNWLAVMHNQQLCGILADEMGLGKTIQVISFLAYLHEAGLSRPKSPHLIIVPS-STLCKYKV-PSRWRT 86 (131)
Q Consensus 9 ~~~L~~~Q~~~v~~l~~~~~~~~g~ilad~mGlGKT~~~ia~l~~~~~~~~~~~~~~~LIv~P~-sl~~~W~~-~~~~~p 86 (131)
+++++++|.+++..+. .+...++..++|.|||+..+..+...... ...+||++|. .++.||.+ ++++.+
T Consensus 19 ~~~~~~~Q~~~i~~i~----~~~~~lv~apTGsGKT~~~l~~~~~~~~~-----~~~~lil~Pt~~L~~q~~~~~~~~~~ 89 (414)
T 3oiy_A 19 GKDLTGYQRLWAKRIV----QGKSFTMVAPTGVGKTTFGMMTALWLARK-----GKKSALVFPTVTLVKQTLERLQKLAD 89 (414)
T ss_dssp SSCCCHHHHHHHHHHT----TTCCEECCSCSSSSHHHHHHHHHHHHHTT-----TCCEEEEESSHHHHHHHHHHHHHHCC
T ss_pred CCCCCHHHHHHHHHHh----cCCCEEEEeCCCCCHHHHHHHHHHHHhcC-----CCEEEEEECCHHHHHHHHHHHHHHcc
Confidence 5678999999998877 66788999999999999555443333211 4789999996 68899999 999886
Q ss_pred -CCceeeccCCCcchh-hhhhcCccCCCCCCCCCCCcEEEEcccc
Q psy2050 87 -SNCDKTSPVKPQTIT-VAQLRVPECDQSPSQEVGYNDIIMYLNI 129 (131)
Q Consensus 87 -~~~v~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~VvIttY~~ 129 (131)
++++..++++..... ..+...+.. ...+|+|+|.+.
T Consensus 90 ~~~~v~~~~g~~~~~~~~~~~~~l~~-------~~~~Iiv~Tp~~ 127 (414)
T 3oiy_A 90 EKVKIFGFYSSMKKEEKEKFEKSFEE-------DDYHILVFSTQF 127 (414)
T ss_dssp SSCCEEECCTTSCHHHHHHHHHHHHH-------TCCSEEEEEHHH
T ss_pred CCceEEEEECCCChhhHHHHHHHhhc-------CCCCEEEECHHH
Confidence 667776666554311 111111110 026899998753
No 40
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=98.82 E-value=1.6e-08 Score=73.05 Aligned_cols=103 Identities=15% Similarity=0.067 Sum_probs=67.1
Q ss_pred CcchHHHHHHHHHHHHhhcccCeeeeCCCCCCHHHHHHHHHHHHHHhC----CCCCCCCEEEEecC-Cchhhhhh-hhcc
Q psy2050 11 KLAGYQLVGLNWLAVMHNQQLCGILADEMGLGKTIQVISFLAYLHEAG----LSRPKSPHLIIVPS-STLCKYKV-PSRW 84 (131)
Q Consensus 11 ~L~~~Q~~~v~~l~~~~~~~~g~ilad~mGlGKT~~~ia~l~~~~~~~----~~~~~~~~LIv~P~-sl~~~W~~-~~~~ 84 (131)
+++++|.+++..+. .++..++....|.|||+..+..+....... .......+||++|. .++.||.+ ++++
T Consensus 42 ~~~~~Q~~~i~~~~----~~~~~l~~apTGsGKT~~~~l~~~~~l~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~ 117 (228)
T 3iuy_A 42 KPTPIQSQAWPIIL----QGIDLIVVAQTGTGKTLSYLMPGFIHLDSQPISREQRNGPGMLVLTPTRELALHVEAECSKY 117 (228)
T ss_dssp SCCHHHHHHHHHHH----TTCCEEEECCTTSCHHHHHHHHHHHHHC---------CCCSEEEECSSHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHh----CCCCEEEECCCCChHHHHHHHHHHHHHHhccchhhccCCCcEEEEeCCHHHHHHHHHHHHHh
Confidence 79999999998877 677889999999999998765443322111 01124678999996 57889999 9888
Q ss_pred c-CCCceeeccCCCc-chhhhhhcCccCCCCCCCCCCCcEEEEccc
Q psy2050 85 R-TSNCDKTSPVKPQ-TITVAQLRVPECDQSPSQEVGYNDIIMYLN 128 (131)
Q Consensus 85 ~-p~~~v~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~VvIttY~ 128 (131)
. ++.++....++.. ........ .+.+|+|+|++
T Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~iiv~Tp~ 152 (228)
T 3iuy_A 118 SYKGLKSICIYGGRNRNGQIEDIS-----------KGVDIIIATPG 152 (228)
T ss_dssp CCTTCCEEEECC------CHHHHH-----------SCCSEEEECHH
T ss_pred cccCceEEEEECCCChHHHHHHhc-----------CCCCEEEECHH
Confidence 5 4556655444332 21111111 14689999875
No 41
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=98.80 E-value=1e-08 Score=90.30 Aligned_cols=110 Identities=12% Similarity=-0.016 Sum_probs=73.6
Q ss_pred CCCCcchHHHHHHHHHHHHhhccc--CeeeeCCCCCCHHHHHHHHHHHHHHhCCCCCCCCEEEEecCC-chhhhhh-hhc
Q psy2050 8 RNLKLAGYQLVGLNWLAVMHNQQL--CGILADEMGLGKTIQVISFLAYLHEAGLSRPKSPHLIIVPSS-TLCKYKV-PSR 83 (131)
Q Consensus 8 ~~~~L~~~Q~~~v~~l~~~~~~~~--g~ilad~mGlGKT~~~ia~l~~~~~~~~~~~~~~~LIv~P~s-l~~~W~~-~~~ 83 (131)
.++.++++|.+++..+.....++. ..+++.++|.|||..++..+...... ...++|+||.. ++.||.+ +.+
T Consensus 600 f~~~~t~~Q~~ai~~il~~~~~g~p~d~ll~~~TGsGKT~val~aa~~~~~~-----g~~vlvlvPt~~La~Q~~~~~~~ 674 (1151)
T 2eyq_A 600 FPFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDN-----HKQVAVLVPTTLLAQQHYDNFRD 674 (1151)
T ss_dssp CCSCCCHHHHHHHHHHHHHHHSSSCCEEEEECCCCTTTHHHHHHHHHHHHTT-----TCEEEEECSSHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHhcCCcCcEEEECCCCCCHHHHHHHHHHHHHHh-----CCeEEEEechHHHHHHHHHHHHH
Confidence 467789999999998887655555 68999999999999887554443332 36899999975 7889999 998
Q ss_pred ccCCC--ceeeccCCCcchh-hhhhcCccCCCCCCCCCCCcEEEEcccc
Q psy2050 84 WRTSN--CDKTSPVKPQTIT-VAQLRVPECDQSPSQEVGYNDIIMYLNI 129 (131)
Q Consensus 84 ~~p~~--~v~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~VvIttY~~ 129 (131)
+++.. ++....+...... ........ ..+.+|||+|+.+
T Consensus 675 ~~~~~~i~v~~l~~~~~~~~~~~~~~~l~-------~g~~dIvV~T~~l 716 (1151)
T 2eyq_A 675 RFANWPVRIEMISRFRSAKEQTQILAEVA-------EGKIDILIGTHKL 716 (1151)
T ss_dssp HSTTTTCCEEEESTTSCHHHHHHHHHHHH-------TTCCSEEEECTHH
T ss_pred HhhcCCCeEEEEeCCCCHHHHHHHHHHHh-------cCCCCEEEECHHH
Confidence 88654 4444333221111 11111111 0136899999865
No 42
>3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase, translation termination, binding, hydrolase, membrane, mRNA transport; 2.80A {Schizosaccharomyces pombe}
Probab=98.79 E-value=3.1e-09 Score=85.81 Aligned_cols=76 Identities=18% Similarity=0.065 Sum_probs=57.9
Q ss_pred CcchHHHHHHHHHHHHhhcc--cCeeeeCCCCCCHHHHHHHHHHHHHHhCCCCCCCCEEEEecC-Cchhhhhh-hhcccC
Q psy2050 11 KLAGYQLVGLNWLAVMHNQQ--LCGILADEMGLGKTIQVISFLAYLHEAGLSRPKSPHLIIVPS-STLCKYKV-PSRWRT 86 (131)
Q Consensus 11 ~L~~~Q~~~v~~l~~~~~~~--~g~ilad~mGlGKT~~~ia~l~~~~~~~~~~~~~~~LIv~P~-sl~~~W~~-~~~~~p 86 (131)
.++++|.+++..+. .+ ...++...+|.|||..++..+......+.. ..++||+||. .++.||.+ ++++..
T Consensus 141 ~p~~~Q~~ai~~i~----~~~~~~~ll~apTGsGKT~~~~~~il~~l~~~~~--~~~vLvl~P~~~L~~Q~~~~~~~~~~ 214 (508)
T 3fho_A 141 XXXKIQEKALPLLL----SNPPRNMIGQSQSGTGKTAAFALTMLSRVDASVP--KPQAICLAPSRELARQIMDVVTEMGK 214 (508)
T ss_dssp ECCCTTSSSHHHHH----CSSCCCEEEECCSSTTSHHHHHHHHHHHSCTTCC--SCCEEEECSCHHHHHHHHHHHHHHST
T ss_pred CcHHHHHHHHHHHH----cCCCCCEEEECCCCccHHHHHHHHHHHHHHhCCC--CceEEEEECcHHHHHHHHHHHHHhCC
Confidence 48899999998777 44 678999999999999877655544333322 4689999996 48899999 999986
Q ss_pred CCceee
Q psy2050 87 SNCDKT 92 (131)
Q Consensus 87 ~~~v~~ 92 (131)
...+..
T Consensus 215 ~~~~~~ 220 (508)
T 3fho_A 215 YTEVKT 220 (508)
T ss_dssp TSSCCE
T ss_pred ccCeeE
Confidence 655443
No 43
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=98.76 E-value=3.9e-08 Score=76.21 Aligned_cols=105 Identities=10% Similarity=0.051 Sum_probs=69.7
Q ss_pred CCcchHHHHHHHHHHHHhhcccCeeeeCCCCCCHHHHHHHHHH-HHHHhCC---------------CCCCCCEEEEecC-
Q psy2050 10 LKLAGYQLVGLNWLAVMHNQQLCGILADEMGLGKTIQVISFLA-YLHEAGL---------------SRPKSPHLIIVPS- 72 (131)
Q Consensus 10 ~~L~~~Q~~~v~~l~~~~~~~~g~ilad~mGlGKT~~~ia~l~-~~~~~~~---------------~~~~~~~LIv~P~- 72 (131)
..++++|.+++..+. .++..++..++|.|||+..+..+. .+..... ......+||++|.
T Consensus 36 ~~~~~~Q~~~i~~i~----~~~~~lv~a~TGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Pt~ 111 (417)
T 2i4i_A 36 TRPTPVQKHAIPIIK----EKRDLMACAQTGSGKTAAFLLPILSQIYSDGPGEALRAMKENGRYGRRKQYPISLVLAPTR 111 (417)
T ss_dssp CSCCHHHHHHHHHHH----TTCCEEEECCTTSCHHHHHHHHHHHHHHHHCCCHHHHHHHHCBTTBSCSBCCSEEEECSSH
T ss_pred CCCCHHHHHHHHHHc----cCCCEEEEcCCCCHHHHHHHHHHHHHHHhccccchhhccccccccccccCCccEEEECCcH
Confidence 378999999998776 677899999999999987655433 3332221 0012468999996
Q ss_pred Cchhhhhh-hhcccCC--CceeeccCCCcchh-hhhhcCccCCCCCCCCCCCcEEEEcccc
Q psy2050 73 STLCKYKV-PSRWRTS--NCDKTSPVKPQTIT-VAQLRVPECDQSPSQEVGYNDIIMYLNI 129 (131)
Q Consensus 73 sl~~~W~~-~~~~~p~--~~v~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~VvIttY~~ 129 (131)
.++.||.+ ++++... +++....++..... ..... .+.+|+|+|++.
T Consensus 112 ~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-----------~~~~I~v~Tp~~ 161 (417)
T 2i4i_A 112 ELAVQIYEEARKFSYRSRVRPCVVYGGADIGQQIRDLE-----------RGCHLLVATPGR 161 (417)
T ss_dssp HHHHHHHHHHHHHHTTSSCCEEEECSSSCHHHHHHHHT-----------TCCSEEEECHHH
T ss_pred HHHHHHHHHHHHHhCcCCceEEEEECCCCHHHHHHHhh-----------CCCCEEEEChHH
Confidence 68889999 9988754 45555444433221 11111 146899999864
No 44
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=98.76 E-value=4.3e-08 Score=77.59 Aligned_cols=104 Identities=11% Similarity=-0.026 Sum_probs=70.4
Q ss_pred CcchHHHHHHHHHHHHhhcccCeeeeCCCCCCHHHHHHHHHHH-HHHhCC--CCCCCCEEEEecC-Cchhhhhh-hhccc
Q psy2050 11 KLAGYQLVGLNWLAVMHNQQLCGILADEMGLGKTIQVISFLAY-LHEAGL--SRPKSPHLIIVPS-STLCKYKV-PSRWR 85 (131)
Q Consensus 11 ~L~~~Q~~~v~~l~~~~~~~~g~ilad~mGlGKT~~~ia~l~~-~~~~~~--~~~~~~~LIv~P~-sl~~~W~~-~~~~~ 85 (131)
.++++|.+++..+. .++..++..++|.|||+..+..+.. +..... ......+||++|. .++.||.+ ++++.
T Consensus 78 ~pt~iQ~~ai~~i~----~g~d~i~~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~~~~lil~PtreLa~Q~~~~~~~~~ 153 (434)
T 2db3_A 78 IPTPIQKCSIPVIS----SGRDLMACAQTGSGKTAAFLLPILSKLLEDPHELELGRPQVVIVSPTRELAIQIFNEARKFA 153 (434)
T ss_dssp SCCHHHHHHHHHHH----TTCCEEEECCTTSSHHHHHHHHHHHHHHHSCCCCCTTCCSEEEECSSHHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHh----cCCCEEEECCCCCCchHHHHHHHHHHHHhcccccccCCccEEEEecCHHHHHHHHHHHHHHh
Confidence 48999999999887 7788999999999999977654443 333221 1124579999996 68889999 99987
Q ss_pred CC--CceeeccCCCcch-hhhhhcCccCCCCCCCCCCCcEEEEcccc
Q psy2050 86 TS--NCDKTSPVKPQTI-TVAQLRVPECDQSPSQEVGYNDIIMYLNI 129 (131)
Q Consensus 86 p~--~~v~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~VvIttY~~ 129 (131)
.. +++....++.... ...... .+.+|+|+|+..
T Consensus 154 ~~~~~~~~~~~gg~~~~~~~~~l~-----------~~~~Ivv~Tp~~ 189 (434)
T 2db3_A 154 FESYLKIGIVYGGTSFRHQNECIT-----------RGCHVVIATPGR 189 (434)
T ss_dssp TTSSCCCCEECTTSCHHHHHHHHT-----------TCCSEEEECHHH
T ss_pred ccCCcEEEEEECCCCHHHHHHHhh-----------cCCCEEEEChHH
Confidence 54 4444444433221 111111 147899999763
No 45
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=98.71 E-value=5.2e-08 Score=82.90 Aligned_cols=110 Identities=13% Similarity=-0.053 Sum_probs=77.4
Q ss_pred CCCCcchHHHHHHHHHHHHhhccc--CeeeeCCCCCCHHHHHHHHHHHHHHhCCCCCCCCEEEEecC-Cchhhhhh-hhc
Q psy2050 8 RNLKLAGYQLVGLNWLAVMHNQQL--CGILADEMGLGKTIQVISFLAYLHEAGLSRPKSPHLIIVPS-STLCKYKV-PSR 83 (131)
Q Consensus 8 ~~~~L~~~Q~~~v~~l~~~~~~~~--g~ilad~mGlGKT~~~ia~l~~~~~~~~~~~~~~~LIv~P~-sl~~~W~~-~~~ 83 (131)
.+++|+++|.+++..+......+. ..++..++|.|||+.++..+......+ ..++|++|. .+..||.+ +.+
T Consensus 365 lpf~lt~~Q~~ai~~I~~~l~~~~~~~~Ll~a~TGSGKTlvall~il~~l~~g-----~qvlvlaPtr~La~Q~~~~l~~ 439 (780)
T 1gm5_A 365 LPFKLTNAQKRAHQEIRNDMISEKPMNRLLQGDVGSGKTVVAQLAILDNYEAG-----FQTAFMVPTSILAIQHYRRTVE 439 (780)
T ss_dssp SSSCCCHHHHHHHHHHHHHHHSSSCCCCEEECCSSSSHHHHHHHHHHHHHHHT-----SCEEEECSCHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHhhccccCCCcEEEEcCCCCCHHHHHHHHHHHHHHcC-----CeEEEEeCcHHHHHHHHHHHHH
Confidence 567899999999998876554443 789999999999999887766555443 679999997 57889999 999
Q ss_pred ccC--CCceeeccCCCcchhh-hhhcCccCCCCCCCCCCCcEEEEcccc
Q psy2050 84 WRT--SNCDKTSPVKPQTITV-AQLRVPECDQSPSQEVGYNDIIMYLNI 129 (131)
Q Consensus 84 ~~p--~~~v~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~VvIttY~~ 129 (131)
+++ +.++...+++...... ....... ....+|||+|+.+
T Consensus 440 ~~~~~gi~v~~l~G~~~~~~r~~~~~~l~-------~g~~~IvVgT~~l 481 (780)
T 1gm5_A 440 SFSKFNIHVALLIGATTPSEKEKIKSGLR-------NGQIDVVIGTHAL 481 (780)
T ss_dssp HHTCSSCCEEECCSSSCHHHHHHHHHHHH-------SSCCCEEEECTTH
T ss_pred HhhhcCceEEEEeCCCCHHHHHHHHHHHh-------cCCCCEEEECHHH
Confidence 987 4566666655432211 1111111 0136899999864
No 46
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=98.69 E-value=4.2e-08 Score=71.64 Aligned_cols=103 Identities=12% Similarity=0.016 Sum_probs=68.1
Q ss_pred CcchHHHHHHHHHHHHhhcccCeeeeCCCCCCHHHHHHHHHHHHHHhCC---CCCCCCEEEEecC-Cchhhhhh-hhccc
Q psy2050 11 KLAGYQLVGLNWLAVMHNQQLCGILADEMGLGKTIQVISFLAYLHEAGL---SRPKSPHLIIVPS-STLCKYKV-PSRWR 85 (131)
Q Consensus 11 ~L~~~Q~~~v~~l~~~~~~~~g~ilad~mGlGKT~~~ia~l~~~~~~~~---~~~~~~~LIv~P~-sl~~~W~~-~~~~~ 85 (131)
.++++|.+++..+. .++..++....|.|||+..+..+........ ......+||+||. .++.||.+ ++++.
T Consensus 51 ~~~~~Q~~~i~~~~----~g~~~l~~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~lil~Pt~~L~~Q~~~~~~~~~ 126 (242)
T 3fe2_A 51 EPTAIQAQGWPVAL----SGLDMVGVAQTGSGKTLSYLLPAIVHINHQPFLERGDGPICLVLAPTRELAQQVQQVAAEYC 126 (242)
T ss_dssp SCCHHHHHHHHHHH----HTCCEEEEECTTSCHHHHHHHHHHHHHHTSCCCCTTCCCSEEEECSSHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHh----CCCCEEEECCCcCHHHHHHHHHHHHHHHhccccccCCCCEEEEEeCcHHHHHHHHHHHHHHH
Confidence 48999999998877 6678899999999999986655443332211 0124568999995 67889999 88886
Q ss_pred CC--CceeeccCCCc-chhhhhhcCccCCCCCCCCCCCcEEEEccc
Q psy2050 86 TS--NCDKTSPVKPQ-TITVAQLRVPECDQSPSQEVGYNDIIMYLN 128 (131)
Q Consensus 86 p~--~~v~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~VvIttY~ 128 (131)
.. .++....++.. ........ . +.+|+|+|.+
T Consensus 127 ~~~~~~~~~~~g~~~~~~~~~~~~--~---------~~~I~v~Tp~ 161 (242)
T 3fe2_A 127 RACRLKSTCIYGGAPKGPQIRDLE--R---------GVEICIATPG 161 (242)
T ss_dssp HHTTCCEEEECTTSCHHHHHHHHH--H---------CCSEEEECHH
T ss_pred hhcCceEEEEECCCChHHHHHHhc--C---------CCCEEEECHH
Confidence 43 45554444332 22222211 1 3689999874
No 47
>2xgj_A ATP-dependent RNA helicase DOB1; hydrolase-RNA complex, hydrolase, tramp, exosome, DEAD, nucleotide-binding; HET: ADP; 2.90A {Saccharomyces cerevisiae}
Probab=98.67 E-value=2.7e-08 Score=86.63 Aligned_cols=94 Identities=11% Similarity=-0.038 Sum_probs=69.8
Q ss_pred CCCCcchHHHHHHHHHHHHhhcccCeeeeCCCCCCHHHHHHHHHHHHHHhCCCCCCCCEEEEecC-Cchhhhhh-hhccc
Q psy2050 8 RNLKLAGYQLVGLNWLAVMHNQQLCGILADEMGLGKTIQVISFLAYLHEAGLSRPKSPHLIIVPS-STLCKYKV-PSRWR 85 (131)
Q Consensus 8 ~~~~L~~~Q~~~v~~l~~~~~~~~g~ilad~mGlGKT~~~ia~l~~~~~~~~~~~~~~~LIv~P~-sl~~~W~~-~~~~~ 85 (131)
.++.|++||.+++..+. .+...+++.++|.|||+.+...+...... ..++|+++|. .+..||.+ +.+++
T Consensus 83 ~~f~L~~~Q~eai~~l~----~g~~vLV~apTGSGKTlva~lai~~~l~~-----g~rvL~l~PtkaLa~Q~~~~l~~~~ 153 (1010)
T 2xgj_A 83 YPFTLDPFQDTAISCID----RGESVLVSAHTSAGKTVVAEYAIAQSLKN-----KQRVIYTSPIKALSNQKYRELLAEF 153 (1010)
T ss_dssp CSSCCCHHHHHHHHHHH----HTCEEEEECCTTSCHHHHHHHHHHHHHHT-----TCEEEEEESSHHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHH----cCCCEEEECCCCCChHHHHHHHHHHHhcc-----CCeEEEECChHHHHHHHHHHHHHHh
Confidence 46789999999999876 56778999999999999886555444333 3789999996 78899999 99888
Q ss_pred CCCceeeccCCCcchhhhhhcCccCCCCCCCCCCCcEEEEcccc
Q psy2050 86 TSNCDKTSPVKPQTITVAQLRVPECDQSPSQEVGYNDIIMYLNI 129 (131)
Q Consensus 86 p~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~VvIttY~~ 129 (131)
+ ++....|+.... .+.+|+|+|+++
T Consensus 154 ~--~vglltGd~~~~-----------------~~~~IvV~Tpe~ 178 (1010)
T 2xgj_A 154 G--DVGLMTGDITIN-----------------PDAGCLVMTTEI 178 (1010)
T ss_dssp S--CEEEECSSCEEC-----------------TTCSEEEEEHHH
T ss_pred C--CEEEEeCCCccC-----------------CCCCEEEEcHHH
Confidence 7 444444432210 135799999864
No 48
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=98.64 E-value=8e-08 Score=71.32 Aligned_cols=74 Identities=18% Similarity=0.087 Sum_probs=54.6
Q ss_pred CcchHHHHHHHHHHHHhhcccCeeeeCCCCCCHHHHHHHHHHHHHHh-CCC-CCCCCEEEEecC-Cchhhhhh-hhcccC
Q psy2050 11 KLAGYQLVGLNWLAVMHNQQLCGILADEMGLGKTIQVISFLAYLHEA-GLS-RPKSPHLIIVPS-STLCKYKV-PSRWRT 86 (131)
Q Consensus 11 ~L~~~Q~~~v~~l~~~~~~~~g~ilad~mGlGKT~~~ia~l~~~~~~-~~~-~~~~~~LIv~P~-sl~~~W~~-~~~~~p 86 (131)
+++++|.+++..+. .++..++....|.|||+.++..+...... ... .....+||++|. .++.||.+ ++++..
T Consensus 76 ~~~~~Q~~~i~~~~----~~~~~lv~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~~~lil~Pt~~La~q~~~~~~~~~~ 151 (262)
T 3ly5_A 76 NMTEIQHKSIRPLL----EGRDLLAAAKTGSGKTLAFLIPAVELIVKLRFMPRNGTGVLILSPTRELAMQTFGVLKELMT 151 (262)
T ss_dssp BCCHHHHHHHHHHH----HTCCCEECCCTTSCHHHHHHHHHHHHHHHTTCCGGGCCCEEEECSSHHHHHHHHHHHHHHTT
T ss_pred CCCHHHHHHHHHHh----CCCcEEEEccCCCCchHHHHHHHHHHHHhccccccCCceEEEEeCCHHHHHHHHHHHHHHHh
Confidence 38999999998777 45678999999999999866554433322 111 114679999996 68889999 999876
Q ss_pred CC
Q psy2050 87 SN 88 (131)
Q Consensus 87 ~~ 88 (131)
..
T Consensus 152 ~~ 153 (262)
T 3ly5_A 152 HH 153 (262)
T ss_dssp TC
T ss_pred hc
Confidence 53
No 49
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens}
Probab=98.53 E-value=1.5e-07 Score=74.93 Aligned_cols=80 Identities=13% Similarity=-0.021 Sum_probs=54.1
Q ss_pred CCcchHHHHHHHHHHHHhhcc--cCeeeeCCCCCCHHHHHHHHHHHHHHhCCCCCCCCEEEEecC-Cchhhhhh-hhcc-
Q psy2050 10 LKLAGYQLVGLNWLAVMHNQQ--LCGILADEMGLGKTIQVISFLAYLHEAGLSRPKSPHLIIVPS-STLCKYKV-PSRW- 84 (131)
Q Consensus 10 ~~L~~~Q~~~v~~l~~~~~~~--~g~ilad~mGlGKT~~~ia~l~~~~~~~~~~~~~~~LIv~P~-sl~~~W~~-~~~~- 84 (131)
..++++|.+++..+. .+ ...++...+|.|||+..+..+......+.. ...+||++|. .+..||.+ ++++
T Consensus 113 ~~p~~~Q~~ai~~il----~~~~~~~l~~a~TGsGKT~~~~l~il~~l~~~~~--~~~~lil~Pt~~La~Q~~~~~~~~~ 186 (479)
T 3fmp_B 113 NRPSKIQENALPLML----AEPPQNLIAQSQSGTGKTAAFVLAMLSQVEPANK--YPQCLCLSPTYELALQTGKVIEQMG 186 (479)
T ss_dssp CSCCHHHHHHHHHHT----SBSCCEEEEECCSSSSHHHHHHHHHHTTCCTTSC--SCCEEEECSSHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHH----cCCCCcEEEEcCCCCchhHHHHHHHHHHHhhcCC--CCcEEEEeChHHHHHHHHHHHHHHH
Confidence 357889999998877 44 567889999999999865544332222211 3479999996 57778866 5554
Q ss_pred --cCCCceeeccC
Q psy2050 85 --RTSNCDKTSPV 95 (131)
Q Consensus 85 --~p~~~v~~~~~ 95 (131)
.+...+....+
T Consensus 187 ~~~~~~~~~~~~~ 199 (479)
T 3fmp_B 187 KFYPELKLAYAVR 199 (479)
T ss_dssp TTSTTCCEEEEST
T ss_pred hhCCCceEEEEeC
Confidence 45566655333
No 50
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=98.52 E-value=1.9e-07 Score=78.19 Aligned_cols=97 Identities=12% Similarity=0.006 Sum_probs=68.2
Q ss_pred CcchHHHHHHHH-HHHHhhcccCeeeeCCCCCCHHHHHHHHHH-HHHHhCCCCCCCCEEEEecC-Cchhhhhh-hhcccC
Q psy2050 11 KLAGYQLVGLNW-LAVMHNQQLCGILADEMGLGKTIQVISFLA-YLHEAGLSRPKSPHLIIVPS-STLCKYKV-PSRWRT 86 (131)
Q Consensus 11 ~L~~~Q~~~v~~-l~~~~~~~~g~ilad~mGlGKT~~~ia~l~-~~~~~~~~~~~~~~LIv~P~-sl~~~W~~-~~~~~p 86 (131)
.|+++|.+++.. +. .+...+++.+.|.|||.++...+. .+... ..++++++|. .++.||.+ ++++.+
T Consensus 23 ~l~~~Q~~~i~~~~~----~~~~~lv~apTGsGKT~~~~l~il~~~~~~-----~~~~l~i~P~raLa~q~~~~~~~l~~ 93 (720)
T 2zj8_A 23 SFYPPQAEALKSGIL----EGKNALISIPTASGKTLIAEIAMVHRILTQ-----GGKAVYIVPLKALAEEKFQEFQDWEK 93 (720)
T ss_dssp BCCHHHHHHHTTTGG----GTCEEEEECCGGGCHHHHHHHHHHHHHHHH-----CSEEEEECSSGGGHHHHHHHTGGGGG
T ss_pred CCCHHHHHHHHHHhc----CCCcEEEEcCCccHHHHHHHHHHHHHHHhC-----CCEEEEEcCcHHHHHHHHHHHHHHHh
Confidence 799999999975 33 567789999999999999844443 33333 3789999995 78889999 987765
Q ss_pred -CCceeeccCCCcchhhhhhcCccCCCCCCCCCCCcEEEEcccc
Q psy2050 87 -SNCDKTSPVKPQTITVAQLRVPECDQSPSQEVGYNDIIMYLNI 129 (131)
Q Consensus 87 -~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~VvIttY~~ 129 (131)
+.++....|+...... . ..+.+|+|+|+++
T Consensus 94 ~g~~v~~~~G~~~~~~~-~------------~~~~~Iiv~Tpe~ 124 (720)
T 2zj8_A 94 IGLRVAMATGDYDSKDE-W------------LGKYDIIIATAEK 124 (720)
T ss_dssp GTCCEEEECSCSSCCCG-G------------GGGCSEEEECHHH
T ss_pred cCCEEEEecCCCCcccc-c------------cCCCCEEEECHHH
Confidence 4566665553322110 0 1147899999864
No 51
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=98.49 E-value=3.1e-07 Score=74.99 Aligned_cols=73 Identities=12% Similarity=0.042 Sum_probs=52.1
Q ss_pred CcchHHHHHHHHHHHHhhcccCeeeeCCCCCCHHHHHHHHHHHHHHhCCC--CCCCCEEEEecC-Cchhhhhh-hhccc
Q psy2050 11 KLAGYQLVGLNWLAVMHNQQLCGILADEMGLGKTIQVISFLAYLHEAGLS--RPKSPHLIIVPS-STLCKYKV-PSRWR 85 (131)
Q Consensus 11 ~L~~~Q~~~v~~l~~~~~~~~g~ilad~mGlGKT~~~ia~l~~~~~~~~~--~~~~~~LIv~P~-sl~~~W~~-~~~~~ 85 (131)
.++|+|.+++..++. ..+...++...+|.|||+..+..+......... .....+|||+|. .++.||.+ +.++.
T Consensus 43 ~~~~~Q~~~i~~il~--~~~~dvlv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~~~lvl~Ptr~La~Q~~~~~~~~~ 119 (579)
T 3sqw_A 43 GLTPVQQKTIKPILS--SEDHDVIARAKTGTGKTFAFLIPIFQHLINTKFDSQYMVKAVIVAPTRDLALQIEAEVKKIH 119 (579)
T ss_dssp SCCHHHHHHHHHHHC--SSSEEEEEECCTTSCHHHHHHHHHHHHHHHTTTSSTTSCCEEEECSSHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHc--cCCCeEEEEcCCCcHHHHHHHHHHHHHHHhccccccCCCeEEEEcchHHHHHHHHHHHHHHH
Confidence 499999999977661 123457888999999999866655443333221 113578999995 68889999 88875
No 52
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A
Probab=98.47 E-value=1.9e-07 Score=77.98 Aligned_cols=97 Identities=13% Similarity=-0.020 Sum_probs=70.2
Q ss_pred CcchHHHHHHHHHHHHhhcccCeeeeCCCCCCHHHHHHHHHHHHHHhCCCCCCCCEEEEecCC-chhhhhh-hhcccC-C
Q psy2050 11 KLAGYQLVGLNWLAVMHNQQLCGILADEMGLGKTIQVISFLAYLHEAGLSRPKSPHLIIVPSS-TLCKYKV-PSRWRT-S 87 (131)
Q Consensus 11 ~L~~~Q~~~v~~l~~~~~~~~g~ilad~mGlGKT~~~ia~l~~~~~~~~~~~~~~~LIv~P~s-l~~~W~~-~~~~~p-~ 87 (131)
.|+++|.+++..+. .+...+++.++|.|||.++...+...... ..++++++|.. ++.||.+ ++++.+ +
T Consensus 25 ~l~~~Q~~~i~~i~----~~~~~lv~apTGsGKT~~~~l~il~~~~~-----~~~~l~i~P~r~La~q~~~~~~~~~~~g 95 (702)
T 2p6r_A 25 ELFPPQAEAVEKVF----SGKNLLLAMPTAAGKTLLAEMAMVREAIK-----GGKSLYVVPLRALAGEKYESFKKWEKIG 95 (702)
T ss_dssp CCCCCCHHHHHHHT----TCSCEEEECSSHHHHHHHHHHHHHHHHHT-----TCCEEEEESSHHHHHHHHHHHTTTTTTT
T ss_pred CCCHHHHHHHHHHh----CCCcEEEEcCCccHHHHHHHHHHHHHHHh-----CCcEEEEeCcHHHHHHHHHHHHHHHhcC
Confidence 79999999998855 67789999999999999986665544332 37899999965 8889999 977765 4
Q ss_pred CceeeccCCCcchhhhhhcCccCCCCCCCCCCCcEEEEcccc
Q psy2050 88 NCDKTSPVKPQTITVAQLRVPECDQSPSQEVGYNDIIMYLNI 129 (131)
Q Consensus 88 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~VvIttY~~ 129 (131)
.++....|...... + ...+.+|+|+|++.
T Consensus 96 ~~v~~~~G~~~~~~----~---------~~~~~~Iiv~Tpe~ 124 (702)
T 2p6r_A 96 LRIGISTGDYESRD----E---------HLGDCDIIVTTSEK 124 (702)
T ss_dssp CCEEEECSSCBCCS----S---------CSTTCSEEEEEHHH
T ss_pred CEEEEEeCCCCcch----h---------hccCCCEEEECHHH
Confidence 56665555432211 0 01157899999854
No 53
>4a4z_A Antiviral helicase SKI2; hydrolase, ATPase, mRNA degradation, exosome; HET: ANP; 2.40A {Saccharomyces cerevisiae} PDB: 4a4k_A
Probab=98.45 E-value=5.1e-07 Score=78.59 Aligned_cols=81 Identities=14% Similarity=-0.013 Sum_probs=62.6
Q ss_pred CCCCcchHHHHHHHHHHHHhhcccCeeeeCCCCCCHHHHHHHHHHHHHHhCCCCCCCCEEEEecC-Cchhhhhh-hhccc
Q psy2050 8 RNLKLAGYQLVGLNWLAVMHNQQLCGILADEMGLGKTIQVISFLAYLHEAGLSRPKSPHLIIVPS-STLCKYKV-PSRWR 85 (131)
Q Consensus 8 ~~~~L~~~Q~~~v~~l~~~~~~~~g~ilad~mGlGKT~~~ia~l~~~~~~~~~~~~~~~LIv~P~-sl~~~W~~-~~~~~ 85 (131)
.+++|+++|.+++..+. .+...+++.+.|.|||+.+...+...... ...+||++|. +++.||.+ +.+++
T Consensus 36 ~~f~l~~~Q~~aI~~il----~g~~vlv~apTGsGKTlv~~~~i~~~~~~-----g~~vlvl~PtraLa~Q~~~~l~~~~ 106 (997)
T 4a4z_A 36 WPFELDTFQKEAVYHLE----QGDSVFVAAHTSAGKTVVAEYAIAMAHRN-----MTKTIYTSPIKALSNQKFRDFKETF 106 (997)
T ss_dssp CSSCCCHHHHHHHHHHH----TTCEEEEECCTTSCSHHHHHHHHHHHHHT-----TCEEEEEESCGGGHHHHHHHHHTTC
T ss_pred CCCCCCHHHHHHHHHHH----cCCCEEEEECCCCcHHHHHHHHHHHHHhc-----CCeEEEEeCCHHHHHHHHHHHHHHc
Confidence 56789999999998776 67788999999999998765555444333 3679999994 68889999 99988
Q ss_pred CCCceeeccCCC
Q psy2050 86 TSNCDKTSPVKP 97 (131)
Q Consensus 86 p~~~v~~~~~~~ 97 (131)
++.++....++.
T Consensus 107 ~~~~v~~l~G~~ 118 (997)
T 4a4z_A 107 DDVNIGLITGDV 118 (997)
T ss_dssp --CCEEEECSSC
T ss_pred CCCeEEEEeCCC
Confidence 877777766644
No 54
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=98.45 E-value=6.4e-07 Score=74.76 Aligned_cols=102 Identities=16% Similarity=0.046 Sum_probs=70.5
Q ss_pred CCC-CcchHHHHHHHHHHHHhhcccCeeeeCCCCCCHHHHHHHHHHHHHHhCCCCCCCCEEEEecCC-chhhhhh-hhcc
Q psy2050 8 RNL-KLAGYQLVGLNWLAVMHNQQLCGILADEMGLGKTIQVISFLAYLHEAGLSRPKSPHLIIVPSS-TLCKYKV-PSRW 84 (131)
Q Consensus 8 ~~~-~L~~~Q~~~v~~l~~~~~~~~g~ilad~mGlGKT~~~ia~l~~~~~~~~~~~~~~~LIv~P~s-l~~~W~~-~~~~ 84 (131)
.++ .|+++|.+++..+. ..+...+++.+.|.|||.++...+....... ..++++++|.. ++.||.+ ++++
T Consensus 26 ~g~~~l~~~Q~~~i~~~~---~~~~~~lv~apTGsGKT~~~~l~il~~~~~~----~~~il~i~P~r~La~q~~~~~~~~ 98 (715)
T 2va8_A 26 RGIKKLNPPQTEAVKKGL---LEGNRLLLTSPTGSGKTLIAEMGIISFLLKN----GGKAIYVTPLRALTNEKYLTFKDW 98 (715)
T ss_dssp TSCCBCCHHHHHHHHTTT---TTTCCEEEECCTTSCHHHHHHHHHHHHHHHS----CSEEEEECSCHHHHHHHHHHHGGG
T ss_pred CCCCCCCHHHHHHHHHHh---cCCCcEEEEcCCCCcHHHHHHHHHHHHHHHC----CCeEEEEeCcHHHHHHHHHHHHHh
Confidence 344 89999999997522 2567889999999999999966655433322 37899999975 7889999 9776
Q ss_pred cC-CCceeeccCCCcchhhhhhcCccCCCCCCCCCCCcEEEEcccc
Q psy2050 85 RT-SNCDKTSPVKPQTITVAQLRVPECDQSPSQEVGYNDIIMYLNI 129 (131)
Q Consensus 85 ~p-~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~VvIttY~~ 129 (131)
.+ +.++....|...+... .. .+.+|+|+|++.
T Consensus 99 ~~~g~~v~~~~G~~~~~~~-~~------------~~~~Iiv~Tpe~ 131 (715)
T 2va8_A 99 ELIGFKVAMTSGDYDTDDA-WL------------KNYDIIITTYEK 131 (715)
T ss_dssp GGGTCCEEECCSCSSSCCG-GG------------GGCSEEEECHHH
T ss_pred hcCCCEEEEEeCCCCCchh-hc------------CCCCEEEEcHHH
Confidence 54 5566665554332111 01 147899999854
No 55
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae}
Probab=98.44 E-value=3.3e-07 Score=80.51 Aligned_cols=71 Identities=11% Similarity=0.013 Sum_probs=57.8
Q ss_pred CCCCcchHHHHHHHHHHHHhhcccCeeeeCCCCCCHHHHHHHHHHHHHHhCCCCCCCCEEEEecC-Cchhhhhh-hhccc
Q psy2050 8 RNLKLAGYQLVGLNWLAVMHNQQLCGILADEMGLGKTIQVISFLAYLHEAGLSRPKSPHLIIVPS-STLCKYKV-PSRWR 85 (131)
Q Consensus 8 ~~~~L~~~Q~~~v~~l~~~~~~~~g~ilad~mGlGKT~~~ia~l~~~~~~~~~~~~~~~LIv~P~-sl~~~W~~-~~~~~ 85 (131)
..+.|+++|.+++..+. .+...+++.+.|.|||+++...+...... ..++||++|. .+..||.+ +.+++
T Consensus 181 ~~f~ltp~Q~~AI~~i~----~g~dvLV~ApTGSGKTlva~l~i~~~l~~-----g~rvlvl~PtraLa~Q~~~~l~~~~ 251 (1108)
T 3l9o_A 181 YPFTLDPFQDTAISCID----RGESVLVSAHTSAGKTVVAEYAIAQSLKN-----KQRVIYTSPIKALSNQKYRELLAEF 251 (1108)
T ss_dssp CSSCCCHHHHHHHHHHT----TTCCEEEECCSSSHHHHHHHHHHHHHHHT-----TCEEEEEESSHHHHHHHHHHHHHHT
T ss_pred CCCCCCHHHHHHHHHHH----cCCCEEEECCCCCChHHHHHHHHHHHHhc-----CCeEEEEcCcHHHHHHHHHHHHHHh
Confidence 45679999999998875 77788999999999999887666554433 3789999996 67889999 99988
Q ss_pred CC
Q psy2050 86 TS 87 (131)
Q Consensus 86 p~ 87 (131)
..
T Consensus 252 ~~ 253 (1108)
T 3l9o_A 252 GD 253 (1108)
T ss_dssp SS
T ss_pred CC
Confidence 73
No 56
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=98.42 E-value=7.1e-07 Score=72.22 Aligned_cols=73 Identities=12% Similarity=0.042 Sum_probs=51.9
Q ss_pred CcchHHHHHHHHHHHHhhcccCeeeeCCCCCCHHHHHHHHHHHHHHhCCC--CCCCCEEEEecC-Cchhhhhh-hhccc
Q psy2050 11 KLAGYQLVGLNWLAVMHNQQLCGILADEMGLGKTIQVISFLAYLHEAGLS--RPKSPHLIIVPS-STLCKYKV-PSRWR 85 (131)
Q Consensus 11 ~L~~~Q~~~v~~l~~~~~~~~g~ilad~mGlGKT~~~ia~l~~~~~~~~~--~~~~~~LIv~P~-sl~~~W~~-~~~~~ 85 (131)
.++++|.+++..++. ..++..++...+|.|||+..+..+......... ....++||++|. .++.||.+ ++++.
T Consensus 94 ~~~~~Q~~~i~~~l~--~~~~~~lv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~~~lil~Ptr~La~Q~~~~~~~~~ 170 (563)
T 3i5x_A 94 GLTPVQQKTIKPILS--SEDHDVIARAKTGTGKTFAFLIPIFQHLINTKFDSQYMVKAVIVAPTRDLALQIEAEVKKIH 170 (563)
T ss_dssp SCCHHHHHHHHHHHS--SSSEEEEEECCTTSCHHHHHHHHHHHHHHHTTTSSTTSCCEEEECSSHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHhc--CCCCeEEEECCCCCCccHHHHHHHHHHHHhccccccCCeeEEEEcCcHHHHHHHHHHHHHHH
Confidence 499999999987661 123457888999999999876655443333221 113479999995 68889999 88864
No 57
>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens}
Probab=98.29 E-value=2.6e-06 Score=64.47 Aligned_cols=100 Identities=12% Similarity=-0.038 Sum_probs=63.1
Q ss_pred CCcchHHHHHHHHHHHHhhcc--cCeeeeCCCCCCHHHHHHHHHHHHHHhCCCCCCCCEEEEecC-Cchhhhhh-hhccc
Q psy2050 10 LKLAGYQLVGLNWLAVMHNQQ--LCGILADEMGLGKTIQVISFLAYLHEAGLSRPKSPHLIIVPS-STLCKYKV-PSRWR 85 (131)
Q Consensus 10 ~~L~~~Q~~~v~~l~~~~~~~--~g~ilad~mGlGKT~~~ia~l~~~~~~~~~~~~~~~LIv~P~-sl~~~W~~-~~~~~ 85 (131)
..+.++|.+++..+. .+ +..++....|.|||+..+..+........ ....+||++|. .++.|..+ +.++.
T Consensus 113 ~~pt~iQ~~ai~~il----~~~~~~~l~~a~TGsGKT~a~~lp~l~~l~~~~--~~~~~lil~PtreLa~Q~~~~~~~l~ 186 (300)
T 3fmo_B 113 NRPSKIQENALPLML----AEPPQNLIAQSQSGTGKTAAFVLAMLSQVEPAN--KYPQCLCLSPTYELALQTGKVIEQMG 186 (300)
T ss_dssp CSCCHHHHHHHHHHT----SSSCCCEEEECCTTSSHHHHHHHHHHHHCCTTS--CSCCEEEECSSHHHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHH----cCCCCeEEEECCCCCCccHHHHHHHHHhhhccC--CCceEEEEcCcHHHHHHHHHHHHHHH
Confidence 357889999997766 44 67788999999999975533332222111 13469999995 57778777 66654
Q ss_pred ---CCCceeeccCCCcchhhhhhcCccCCCCCCCCCCCcEEEEccc
Q psy2050 86 ---TSNCDKTSPVKPQTITVAQLRVPECDQSPSQEVGYNDIIMYLN 128 (131)
Q Consensus 86 ---p~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~VvIttY~ 128 (131)
+..++....++...... ...+.+|||+|..
T Consensus 187 ~~~~~~~~~~~~~~~~~~~~-------------~~~~~~IlV~TP~ 219 (300)
T 3fmo_B 187 KFYPELKLAYAVRGNKLERG-------------QKISEQIVIGTPG 219 (300)
T ss_dssp TTSTTCCEEEESTTCCCCTT-------------CCCCCSEEEECHH
T ss_pred hhCCCcEEEEEeCCccHhhh-------------hcCCCCEEEECHH
Confidence 56666654443322100 0124679998864
No 58
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Probab=98.23 E-value=7.5e-07 Score=72.36 Aligned_cols=72 Identities=10% Similarity=-0.087 Sum_probs=54.1
Q ss_pred CCcchHHHHHHHHHHHHhhcccCeeeeCCCCCCHHHHHHHHHHHHHHhCCCCCCCCEEEEecC-Cchhhhhh-hhcccCC
Q psy2050 10 LKLAGYQLVGLNWLAVMHNQQLCGILADEMGLGKTIQVISFLAYLHEAGLSRPKSPHLIIVPS-STLCKYKV-PSRWRTS 87 (131)
Q Consensus 10 ~~L~~~Q~~~v~~l~~~~~~~~g~ilad~mGlGKT~~~ia~l~~~~~~~~~~~~~~~LIv~P~-sl~~~W~~-~~~~~p~ 87 (131)
..++++|.+++..+. .++.+++...+|.|||+.....+ +.. .+.+|||+|. +++.||.+ ++++ +
T Consensus 24 ~~~r~~Q~~~i~~il----~g~d~lv~apTGsGKTl~~~lp~--l~~------~g~~lvi~P~~aL~~q~~~~l~~~--g 89 (523)
T 1oyw_A 24 QQFRPGQEEIIDTVL----SGRDCLVVMPTGGGKSLCYQIPA--LLL------NGLTVVVSPLISLMKDQVDQLQAN--G 89 (523)
T ss_dssp SSCCTTHHHHHHHHH----TTCCEEEECSCHHHHHHHHHHHH--HHS------SSEEEEECSCHHHHHHHHHHHHHT--T
T ss_pred CCCCHHHHHHHHHHH----cCCCEEEECCCCcHHHHHHHHHH--HHh------CCCEEEECChHHHHHHHHHHHHHc--C
Confidence 368999999999888 67789999999999998554322 221 3779999996 78889999 8876 3
Q ss_pred CceeeccC
Q psy2050 88 NCDKTSPV 95 (131)
Q Consensus 88 ~~v~~~~~ 95 (131)
.++...++
T Consensus 90 i~~~~l~~ 97 (523)
T 1oyw_A 90 VAAACLNS 97 (523)
T ss_dssp CCEEEECT
T ss_pred CcEEEEeC
Confidence 34444443
No 59
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=98.19 E-value=2.5e-06 Score=70.42 Aligned_cols=100 Identities=15% Similarity=-0.003 Sum_probs=66.5
Q ss_pred CCcchHHHHHHHHHHHHhhcccCeeeeCCCCCCHHHHHHHHHHHHHHhCCCCCCCCEEEEecC-Cchhhhhh-hhcccCC
Q psy2050 10 LKLAGYQLVGLNWLAVMHNQQLCGILADEMGLGKTIQVISFLAYLHEAGLSRPKSPHLIIVPS-STLCKYKV-PSRWRTS 87 (131)
Q Consensus 10 ~~L~~~Q~~~v~~l~~~~~~~~g~ilad~mGlGKT~~~ia~l~~~~~~~~~~~~~~~LIv~P~-sl~~~W~~-~~~~~p~ 87 (131)
..++|+|.+++..+. .++..++....|.|||+.....+ +.. .+.+|||+|. +++.||.+ +.++ +
T Consensus 43 ~~~rp~Q~~~i~~il----~g~d~lv~~pTGsGKTl~~~lpa--l~~------~g~~lVisP~~~L~~q~~~~l~~~--g 108 (591)
T 2v1x_A 43 EKFRPLQLETINVTM----AGKEVFLVMPTGGGKSLCYQLPA--LCS------DGFTLVICPLISLMEDQLMVLKQL--G 108 (591)
T ss_dssp CSCCTTHHHHHHHHH----TTCCEEEECCTTSCTTHHHHHHH--HTS------SSEEEEECSCHHHHHHHHHHHHHH--T
T ss_pred CCCCHHHHHHHHHHH----cCCCEEEEECCCChHHHHHHHHH--HHc------CCcEEEEeCHHHHHHHHHHHHHhc--C
Confidence 378999999999887 67788999999999998544322 211 4789999995 78999999 9887 5
Q ss_pred CceeeccCCCcchhhhh-hcCccCCCCCCCCCCCcEEEEccc
Q psy2050 88 NCDKTSPVKPQTITVAQ-LRVPECDQSPSQEVGYNDIIMYLN 128 (131)
Q Consensus 88 ~~v~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~VvIttY~ 128 (131)
.++...++......... ..... ......+||++|.+
T Consensus 109 i~~~~l~~~~~~~~~~~~~~~l~-----~~~~~~~Ilv~Tpe 145 (591)
T 2v1x_A 109 ISATMLNASSSKEHVKWVHAEMV-----NKNSELKLIYVTPE 145 (591)
T ss_dssp CCEEECCSSCCHHHHHHHHHHHH-----CTTCCCCEEEECHH
T ss_pred CcEEEEeCCCCHHHHHHHHHHhh-----cccCCCCEEEEChh
Confidence 55555554432221110 00000 01124789999875
No 60
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A
Probab=98.08 E-value=1.4e-05 Score=70.18 Aligned_cols=82 Identities=13% Similarity=0.053 Sum_probs=61.2
Q ss_pred CCCCcchHHHHHHHHHHHHhhcccCeeeeCCCCCCHHHHHHHHHHHHHHhCCCCCCCCEEEEecC-Cchhhhhh-hhccc
Q psy2050 8 RNLKLAGYQLVGLNWLAVMHNQQLCGILADEMGLGKTIQVISFLAYLHEAGLSRPKSPHLIIVPS-STLCKYKV-PSRWR 85 (131)
Q Consensus 8 ~~~~L~~~Q~~~v~~l~~~~~~~~g~ilad~mGlGKT~~~ia~l~~~~~~~~~~~~~~~LIv~P~-sl~~~W~~-~~~~~ 85 (131)
.++++.++|.+++..+. .+...++....|.|||...+..+...... ...+||++|. .++.|+.+ ++++.
T Consensus 75 ~gf~pt~iQ~~ai~~il----~g~dvlv~ApTGSGKTl~~l~~il~~~~~-----~~~~Lil~PtreLa~Q~~~~l~~l~ 145 (1104)
T 4ddu_A 75 FGKDLTGYQRLWAKRIV----QGKSFTMVAPTGVGKTTFGMMTALWLARK-----GKKSALVFPTVTLVKQTLERLQKLA 145 (1104)
T ss_dssp SSSCCCHHHHHHHHHHT----TTCCEEECCSTTCCHHHHHHHHHHHHHTT-----TCCEEEEESSHHHHHHHHHHHHTTS
T ss_pred cCCCCCHHHHHHHHHHH----cCCCEEEEeCCCCcHHHHHHHHHHHHHhc-----CCeEEEEechHHHHHHHHHHHHHhh
Confidence 35689999999998877 66788999999999999555544443322 4779999995 67889999 99876
Q ss_pred -CCCceeeccCCCc
Q psy2050 86 -TSNCDKTSPVKPQ 98 (131)
Q Consensus 86 -p~~~v~~~~~~~~ 98 (131)
.++++..++++..
T Consensus 146 ~~~i~v~~l~Gg~~ 159 (1104)
T 4ddu_A 146 DEKVKIFGFYSSMK 159 (1104)
T ss_dssp CTTSCEEEECTTCC
T ss_pred CCCCeEEEEeCCCC
Confidence 3456666555543
No 61
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B*
Probab=97.97 E-value=2.1e-05 Score=68.84 Aligned_cols=102 Identities=9% Similarity=-0.003 Sum_probs=68.6
Q ss_pred CCCCcchHHHHHHHHHHHHhhcccCeeeeCCCCCCHHHHHHHHHHHHHHhCCCCCCCCEEEEecC-Cchhhhhh-hhccc
Q psy2050 8 RNLKLAGYQLVGLNWLAVMHNQQLCGILADEMGLGKTIQVISFLAYLHEAGLSRPKSPHLIIVPS-STLCKYKV-PSRWR 85 (131)
Q Consensus 8 ~~~~L~~~Q~~~v~~l~~~~~~~~g~ilad~mGlGKT~~~ia~l~~~~~~~~~~~~~~~LIv~P~-sl~~~W~~-~~~~~ 85 (131)
.++.+ ++|.+++.-+. .++..++..+.|.|||+.++..+...... ...+||++|. .++.|+.+ ++++.
T Consensus 54 ~g~~p-~iQ~~ai~~il----~g~dvlv~apTGSGKTl~~lp~l~~~~~~-----~~~~lil~PtreLa~Q~~~~l~~l~ 123 (1054)
T 1gku_B 54 VGEPR-AIQKMWAKRIL----RKESFAATAPTGVGKTSFGLAMSLFLALK-----GKRCYVIFPTSLLVIQAAETIRKYA 123 (1054)
T ss_dssp TCSCC-HHHHHHHHHHH----TTCCEECCCCBTSCSHHHHHHHHHHHHTT-----SCCEEEEESCHHHHHHHHHHHHHHH
T ss_pred cCCCH-HHHHHHHHHHH----hCCCEEEEcCCCCCHHHHHHHHHHHHhhc-----CCeEEEEeccHHHHHHHHHHHHHHH
Confidence 45557 99999998877 67788999999999998444444433322 4789999996 57889999 99888
Q ss_pred CCC------ceeeccCCCcchh-hhhhcCccCCCCCCCCCCCcEEEEccc
Q psy2050 86 TSN------CDKTSPVKPQTIT-VAQLRVPECDQSPSQEVGYNDIIMYLN 128 (131)
Q Consensus 86 p~~------~v~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~VvIttY~ 128 (131)
+.. ++..++|+..... ..+...+. +.+|+|+|..
T Consensus 124 ~~~~i~~~~~v~~~~Gg~~~~~~~~~~~~l~---------~~~IlV~TP~ 164 (1054)
T 1gku_B 124 EKAGVGTENLIGYYHGRIPKREKENFMQNLR---------NFKIVITTTQ 164 (1054)
T ss_dssp TTTCCSGGGSEEECCSSCCSHHHHHHHHSGG---------GCSEEEEEHH
T ss_pred hhcCCCccceEEEEeCCCChhhHHHHHhhcc---------CCCEEEEcHH
Confidence 654 4445555443322 11222222 2579998864
No 62
>3crv_A XPD/RAD3 related DNA helicase; XPD helicase DNA repair cancer aging, hydrolase; HET: FLC; 2.00A {Sulfolobus acidocaldarius} PDB: 3crw_1*
Probab=97.59 E-value=0.00027 Score=57.52 Aligned_cols=79 Identities=15% Similarity=0.021 Sum_probs=58.6
Q ss_pred CCCcchHHHHHHHHHHHHhhcccCeeeeCCCCCCHHHHHHHHHHHHHHhCCCCCCCCEEEEecC-Cchhhhhh-hhcccC
Q psy2050 9 NLKLAGYQLVGLNWLAVMHNQQLCGILADEMGLGKTIQVISFLAYLHEAGLSRPKSPHLIIVPS-STLCKYKV-PSRWRT 86 (131)
Q Consensus 9 ~~~L~~~Q~~~v~~l~~~~~~~~g~ilad~mGlGKT~~~ia~l~~~~~~~~~~~~~~~LIv~P~-sl~~~W~~-~~~~~p 86 (131)
++.+||+|.+.+.-+......++..++....|.|||+..+.-+.. . ..+++|++|. .+..|+.+ +.+...
T Consensus 1 ~~~~r~~Q~~~~~~v~~~l~~~~~~~~~a~TGtGKT~~~l~p~l~---~-----~~~v~i~~pt~~l~~q~~~~~~~l~~ 72 (551)
T 3crv_A 1 MVKLRDWQEKLKDKVIEGLRNNFLVALNAPTGSGKTLFSLLVSLE---V-----KPKVLFVVRTHNEFYPIYRDLTKIRE 72 (551)
T ss_dssp CCSCCHHHHHHHHHHHHHHHTTCEEEEECCTTSSHHHHHHHHHHH---H-----CSEEEEEESSGGGHHHHHHHHTTCCC
T ss_pred CCCCCHHHHHHHHHHHHHHHcCCcEEEECCCCccHHHHHHHHHHh---C-----CCeEEEEcCCHHHHHHHHHHHHHHhh
Confidence 357899999988766666667777888899999999977655443 1 4789999995 57889988 888753
Q ss_pred --CCceeeccC
Q psy2050 87 --SNCDKTSPV 95 (131)
Q Consensus 87 --~~~v~~~~~ 95 (131)
++++....+
T Consensus 73 ~~~~~~~~l~g 83 (551)
T 3crv_A 73 KRNITFSFLVG 83 (551)
T ss_dssp SSCCCEEECCC
T ss_pred hcCccEEEEcc
Confidence 345555444
No 63
>2vl7_A XPD; helicase, unknown function; 2.25A {Sulfolobus tokodaii}
Probab=97.57 E-value=0.00018 Score=58.47 Aligned_cols=68 Identities=24% Similarity=0.135 Sum_probs=49.0
Q ss_pred CCCcchHHHHHHHHHHHHhhcccCeeeeCCCCCCHHHHHHHHHHHHHHhCCCCCCCCEEEEecC-Cchhhhhh-hhcc
Q psy2050 9 NLKLAGYQLVGLNWLAVMHNQQLCGILADEMGLGKTIQVISFLAYLHEAGLSRPKSPHLIIVPS-STLCKYKV-PSRW 84 (131)
Q Consensus 9 ~~~L~~~Q~~~v~~l~~~~~~~~g~ilad~mGlGKT~~~ia~l~~~~~~~~~~~~~~~LIv~P~-sl~~~W~~-~~~~ 84 (131)
++.+|++|.+.+.-+......++..++...+|.|||+..+.-+.. . ..+++|++|. +++.|+.+ +.+.
T Consensus 5 ~~~~r~~Q~~~~~~v~~~~~~~~~~~~~a~TGtGKT~~~l~~~~~---~-----~~~~~~~~~t~~l~~q~~~~~~~l 74 (540)
T 2vl7_A 5 KLQLRQWQAEKLGEAINALKHGKTLLLNAKPGLGKTVFVEVLGMQ---L-----KKKVLIFTRTHSQLDSIYKNAKLL 74 (540)
T ss_dssp ----CCHHHHHHHHHHHHHHTTCEEEEECCTTSCHHHHHHHHHHH---H-----TCEEEEEESCHHHHHHHHHHHGGG
T ss_pred CCCCCHHHHHHHHHHHHHHHcCCCEEEEcCCCCcHHHHHHHHHHh---C-----CCcEEEEcCCHHHHHHHHHHHHhc
Confidence 458999999987766655557777888899999999865543322 1 4789999996 57889998 8885
No 64
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=97.03 E-value=0.0012 Score=47.69 Aligned_cols=73 Identities=18% Similarity=0.115 Sum_probs=47.2
Q ss_pred CCCcchHHHHHHHHHHHHhhcccCeeeeCCCCCCHHHHHHHHHHHHHHhCCCCCCCCEEEEecCC-chhhhhh-hhccc
Q psy2050 9 NLKLAGYQLVGLNWLAVMHNQQLCGILADEMGLGKTIQVISFLAYLHEAGLSRPKSPHLIIVPSS-TLCKYKV-PSRWR 85 (131)
Q Consensus 9 ~~~L~~~Q~~~v~~l~~~~~~~~g~ilad~mGlGKT~~~ia~l~~~~~~~~~~~~~~~LIv~P~s-l~~~W~~-~~~~~ 85 (131)
...+.++|.+++..+. .+...++..+.|.|||......+...............++++|.. +..|..+ +.+..
T Consensus 59 ~~p~~~~q~~~i~~i~----~g~~~~i~g~TGsGKTt~~~~~~~~~~~~~~~~~~~~~l~~~p~~~la~q~~~~~~~~~ 133 (235)
T 3llm_A 59 LLPVKKFESEILEAIS----QNSVVIIRGATGCGKTTQVPQFILDDFIQNDRAAECNIVVTQPRRISAVSVAERVAFER 133 (235)
T ss_dssp TSGGGGGHHHHHHHHH----HCSEEEEECCTTSSHHHHHHHHHHHHHHHTTCGGGCEEEEEESSHHHHHHHHHHHHHTT
T ss_pred cCChHHHHHHHHHHHh----cCCEEEEEeCCCCCcHHhHHHHHhcchhhcCCCCceEEEEeccchHHHHHHHHHHHHHh
Confidence 3567899999988776 566678899999999976665554433222111124678888864 3445555 55443
No 65
>4a15_A XPD helicase, ATP-dependent DNA helicase TA0057; hydrolase, nucleotide excision repair,; 2.20A {Thermoplasma acidophilum} PDB: 2vsf_A*
Probab=97.03 E-value=0.00092 Score=55.42 Aligned_cols=82 Identities=16% Similarity=0.072 Sum_probs=57.3
Q ss_pred CCcchHHHHHHHHHHHHhhcccCeeeeCCCCCCHHHHHHHHHHHHHHhCCCCCCCCEEEEecC-Cchhhhhh-hhcccC-
Q psy2050 10 LKLAGYQLVGLNWLAVMHNQQLCGILADEMGLGKTIQVISFLAYLHEAGLSRPKSPHLIIVPS-STLCKYKV-PSRWRT- 86 (131)
Q Consensus 10 ~~L~~~Q~~~v~~l~~~~~~~~g~ilad~mGlGKT~~~ia~l~~~~~~~~~~~~~~~LIv~P~-sl~~~W~~-~~~~~p- 86 (131)
++.|++|++.+.-+......++..++....|.|||+..+.-+....... ..+++|.+|. ++..|+.+ +.+...
T Consensus 2 ~~~R~~Q~~~~~~v~~~l~~~~~~~~~apTGtGKT~a~l~p~l~~~~~~----~~kvli~t~T~~l~~Qi~~el~~l~~~ 77 (620)
T 4a15_A 2 YENRQYQVEAIDFLRSSLQKSYGVALESPTGSGKTIMALKSALQYSSER----KLKVLYLVRTNSQEEQVIKELRSLSST 77 (620)
T ss_dssp ---CHHHHHHHHHHHHHHHHSSEEEEECCTTSCHHHHHHHHHHHHHHHH----TCEEEEEESSHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHcCCCEEEECCCCCCHHHHHHHHHHHhhhhc----CCeEEEECCCHHHHHHHHHHHHHHhhc
Confidence 4679999999877666666777889999999999998876544333221 3678999996 46778888 877653
Q ss_pred -CCceeeccC
Q psy2050 87 -SNCDKTSPV 95 (131)
Q Consensus 87 -~~~v~~~~~ 95 (131)
.+++....+
T Consensus 78 ~~~~~~~l~g 87 (620)
T 4a15_A 78 MKIRAIPMQG 87 (620)
T ss_dssp SCCCEEECCC
T ss_pred cCeEEEEEEC
Confidence 455544333
No 66
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=96.97 E-value=0.0017 Score=59.56 Aligned_cols=98 Identities=15% Similarity=0.010 Sum_probs=62.2
Q ss_pred cchHHHHHHHHHHHHhhcccCeeeeCCCCCCHHHHHHHHHHHHHHhCCCCCCCCEEEEecC-Cchhhhhh-hh-cccC--
Q psy2050 12 LAGYQLVGLNWLAVMHNQQLCGILADEMGLGKTIQVISFLAYLHEAGLSRPKSPHLIIVPS-STLCKYKV-PS-RWRT-- 86 (131)
Q Consensus 12 L~~~Q~~~v~~l~~~~~~~~g~ilad~mGlGKT~~~ia~l~~~~~~~~~~~~~~~LIv~P~-sl~~~W~~-~~-~~~p-- 86 (131)
+.|.|.+++.-+. ..+...+++-..|.|||+.+--.+.....+.. ..++++|+|. +++.|=.+ +. ++.+
T Consensus 927 fnpiQ~q~~~~l~---~~~~nvlv~APTGSGKTliaelail~~l~~~~---~~kavyi~P~raLa~q~~~~~~~~f~~~~ 1000 (1724)
T 4f92_B 927 FNPIQTQVFNTVY---NSDDNVFVGAPTGSGKTICAEFAILRMLLQSS---EGRCVYITPMEALAEQVYMDWYEKFQDRL 1000 (1724)
T ss_dssp CCHHHHHHHHHHH---SCCSCEEEECCTTSCCHHHHHHHHHHHHHHCT---TCCEEEECSCHHHHHHHHHHHHHHHTTTS
T ss_pred CCHHHHHHHHHHh---cCCCcEEEEeCCCCCchHHHHHHHHHHHHhCC---CCEEEEEcChHHHHHHHHHHHHHHhchhc
Confidence 6789999987665 25567888999999999988665554444332 4689999994 66665333 32 3333
Q ss_pred CCceeeccCCCcchhhhhhcCccCCCCCCCCCCCcEEEEccc
Q psy2050 87 SNCDKTSPVKPQTITVAQLRVPECDQSPSQEVGYNDIIMYLN 128 (131)
Q Consensus 87 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~VvIttY~ 128 (131)
+.+|....|+... +..... +.+|+|+|.+
T Consensus 1001 g~~V~~ltGd~~~-~~~~~~------------~~~IiV~TPE 1029 (1724)
T 4f92_B 1001 NKKVVLLTGETST-DLKLLG------------KGNIIISTPE 1029 (1724)
T ss_dssp CCCEEECCSCHHH-HHHHHH------------HCSEEEECHH
T ss_pred CCEEEEEECCCCc-chhhcC------------CCCEEEECHH
Confidence 3455555554321 111111 3689999975
No 67
>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A*
Probab=96.89 E-value=0.003 Score=52.71 Aligned_cols=78 Identities=17% Similarity=0.113 Sum_probs=59.5
Q ss_pred CCCcchHHHHHHHHHHHHhhcccC-eeeeCCCCCCHHHHHHHHHHHHHHhCCCCCCCCEEEEecC-Cchhhhhh-hhccc
Q psy2050 9 NLKLAGYQLVGLNWLAVMHNQQLC-GILADEMGLGKTIQVISFLAYLHEAGLSRPKSPHLIIVPS-STLCKYKV-PSRWR 85 (131)
Q Consensus 9 ~~~L~~~Q~~~v~~l~~~~~~~~g-~ilad~mGlGKT~~~ia~l~~~~~~~~~~~~~~~LIv~P~-sl~~~W~~-~~~~~ 85 (131)
++++.+.|.+++.-+......+.. ..|..-.|.|||..+..++... .+|+|||+|. ....||.+ ++.|+
T Consensus 6 ~~~~~~~q~~ai~~l~~~~~~~~~~~~l~g~tgs~kt~~~a~~~~~~--------~~~~lvv~~~~~~A~ql~~el~~~~ 77 (664)
T 1c4o_A 6 GPSPKGDQPKAIAGLVEALRDGERFVTLLGATGTGKTVTMAKVIEAL--------GRPALVLAPNKILAAQLAAEFRELF 77 (664)
T ss_dssp SCCCCTTHHHHHHHHHHHHHTTCSEEEEEECTTSCHHHHHHHHHHHH--------TCCEEEEESSHHHHHHHHHHHHHHC
T ss_pred CCCCCCCChHHHHHHHHHHhcCCCcEEEEcCCCcHHHHHHHHHHHHh--------CCCEEEEecCHHHHHHHHHHHHHHC
Confidence 468889999998866655444432 4566779999999888776544 4799999996 56889999 99999
Q ss_pred CCCceeecc
Q psy2050 86 TSNCDKTSP 94 (131)
Q Consensus 86 p~~~v~~~~ 94 (131)
|+..|..+.
T Consensus 78 ~~~~V~~fp 86 (664)
T 1c4o_A 78 PENAVEYFI 86 (664)
T ss_dssp TTSEEEECC
T ss_pred CCCeEEEcC
Confidence 987666543
No 68
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=96.61 E-value=0.0044 Score=56.84 Aligned_cols=102 Identities=12% Similarity=-0.069 Sum_probs=62.6
Q ss_pred CcchHHHHHHHHHHHHhhcccCeeeeCCCCCCHHHHHHHHHHH-HHHhCCC-----CCCCCEEEEecC-Cchhhhhh-hh
Q psy2050 11 KLAGYQLVGLNWLAVMHNQQLCGILADEMGLGKTIQVISFLAY-LHEAGLS-----RPKSPHLIIVPS-STLCKYKV-PS 82 (131)
Q Consensus 11 ~L~~~Q~~~v~~l~~~~~~~~g~ilad~mGlGKT~~~ia~l~~-~~~~~~~-----~~~~~~LIv~P~-sl~~~W~~-~~ 82 (131)
.|.+.|.++..-+. ..+.+-+++-..|.|||+.+.-.+.. +...... ....+++.|+|. +|..|=.+ +.
T Consensus 79 ~ln~iQs~~~~~al---~~~~N~lv~APTGsGKTlva~l~il~~l~~~~~~~~~~~~~~~k~lyiaP~kALa~e~~~~l~ 155 (1724)
T 4f92_B 79 TLNRIQSKLYRAAL---ETDENLLLCAPTGAGKTNVALMCMLREIGKHINMDGTINVDDFKIIYIAPMRSLVQEMVGSFG 155 (1724)
T ss_dssp BCCHHHHHTHHHHH---TCCCCEEEECCTTSCCHHHHHHHHHHHHGGGCCTTSSCCTTSCEEEEECSSHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHH---cCCCcEEEEeCCcchHHHHHHHHHHHHHHhhccccccccCCCCEEEEECCHHHHHHHHHHHHH
Confidence 47788999876544 35668899999999999987655443 3322111 124678999994 66665444 54
Q ss_pred cccC--CCceeeccCCCcchhhhhhcCccCCCCCCCCCCCcEEEEccc
Q psy2050 83 RWRT--SNCDKTSPVKPQTITVAQLRVPECDQSPSQEVGYNDIIMYLN 128 (131)
Q Consensus 83 ~~~p--~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~VvIttY~ 128 (131)
+.+. +++|....|+..... .. ..+.+|+|||.+
T Consensus 156 ~~~~~~gi~V~~~tGd~~~~~-~~------------~~~~~IlVtTpE 190 (1724)
T 4f92_B 156 KRLATYGITVAELTGDHQLCK-EE------------ISATQIIVCTPE 190 (1724)
T ss_dssp HHHTTTTCCEEECCSSCSSCC-TT------------GGGCSEEEECHH
T ss_pred HHHhhCCCEEEEEECCCCCCc-cc------------cCCCCEEEECHH
Confidence 4433 345555555432110 11 114789999975
No 69
>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B*
Probab=96.57 E-value=0.0059 Score=50.92 Aligned_cols=79 Identities=16% Similarity=0.129 Sum_probs=59.6
Q ss_pred CCCCcchHHHHHHHHHHHHhhcccC-eeeeCCCCCCHHHHHHHHHHHHHHhCCCCCCCCEEEEecC-Cchhhhhh-hhcc
Q psy2050 8 RNLKLAGYQLVGLNWLAVMHNQQLC-GILADEMGLGKTIQVISFLAYLHEAGLSRPKSPHLIIVPS-STLCKYKV-PSRW 84 (131)
Q Consensus 8 ~~~~L~~~Q~~~v~~l~~~~~~~~g-~ilad~mGlGKT~~~ia~l~~~~~~~~~~~~~~~LIv~P~-sl~~~W~~-~~~~ 84 (131)
..++...+|..++.-+......+.. ..+..-.|.|||..+..++... .+|+|||+|. ....||.+ ++.|
T Consensus 9 ~~~~p~~~Q~~~i~~l~~~~~~~~~~~~l~g~~gs~k~~~~a~~~~~~--------~~~~lvv~~~~~~A~~l~~el~~~ 80 (661)
T 2d7d_A 9 SKYQPQGDQPKAIEKLVKGIQEGKKHQTLLGATGTGKTFTVSNLIKEV--------NKPTLVIAHNKTLAGQLYSEFKEF 80 (661)
T ss_dssp CSCCCCTTHHHHHHHHHHHHHTTCSEEEEEECTTSCHHHHHHHHHHHH--------CCCEEEECSSHHHHHHHHHHHHHH
T ss_pred cCCCCCCCCHHHHHHHHHHHhcCCCcEEEECcCCcHHHHHHHHHHHHh--------CCCEEEEECCHHHHHHHHHHHHHH
Confidence 3567888999998866655444432 4566778999999887766544 4799999996 46889999 9999
Q ss_pred cCCCceeecc
Q psy2050 85 RTSNCDKTSP 94 (131)
Q Consensus 85 ~p~~~v~~~~ 94 (131)
+|+..|..+.
T Consensus 81 ~~~~~v~~fp 90 (661)
T 2d7d_A 81 FPNNAVEYFV 90 (661)
T ss_dssp CTTSEEEEEC
T ss_pred cCCCcEEEcc
Confidence 9987666544
No 70
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=96.21 E-value=0.017 Score=47.84 Aligned_cols=67 Identities=19% Similarity=0.118 Sum_probs=50.3
Q ss_pred CCCcchHHHHHHHHHHHHhhcccCeeeeCCCCCCHHHHHHHHHHHHHHhCCCCCCCCEEEEecCCc-hhhhhh-hhc
Q psy2050 9 NLKLAGYQLVGLNWLAVMHNQQLCGILADEMGLGKTIQVISFLAYLHEAGLSRPKSPHLIIVPSST-LCKYKV-PSR 83 (131)
Q Consensus 9 ~~~L~~~Q~~~v~~l~~~~~~~~g~ilad~mGlGKT~~~ia~l~~~~~~~~~~~~~~~LIv~P~sl-~~~W~~-~~~ 83 (131)
...|-+.|++||...+. ...-.++....|.|||.+.+.++..+... ..++||++|... +.+-.+ +..
T Consensus 187 ~~~LN~~Q~~AV~~al~---~~~~~lI~GPPGTGKT~ti~~~I~~l~~~-----~~~ILv~a~TN~AvD~i~erL~~ 255 (646)
T 4b3f_X 187 NTCLDTSQKEAVLFALS---QKELAIIHGPPGTGKTTTVVEIILQAVKQ-----GLKVLCCAPSNIAVDNLVERLAL 255 (646)
T ss_dssp STTCCHHHHHHHHHHHH---CSSEEEEECCTTSCHHHHHHHHHHHHHHT-----TCCEEEEESSHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHhc---CCCceEEECCCCCCHHHHHHHHHHHHHhC-----CCeEEEEcCchHHHHHHHHHHHh
Confidence 35688999999987662 33357889999999999998888877765 368999999765 444444 543
No 71
>1tf5_A Preprotein translocase SECA subunit; ATPase, helicase, translocation, secretion, protein transport; 2.18A {Bacillus subtilis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1tf2_A 3iqy_A 1m6n_A 1m74_A* 3iqm_A 3jv2_A* 2ibm_A* 3dl8_A 1sx0_A 1sx1_A 1tm6_A
Probab=95.78 E-value=0.065 Score=46.07 Aligned_cols=76 Identities=12% Similarity=-0.088 Sum_probs=48.1
Q ss_pred CCCcchHHHHHHHHHHHHhhcccCeeeeCCCCCCHHHHHHHHHHHHHHhCCCCCCCCEEEEecCC-chh---hhhh-hhc
Q psy2050 9 NLKLAGYQLVGLNWLAVMHNQQLCGILADEMGLGKTIQVISFLAYLHEAGLSRPKSPHLIIVPSS-TLC---KYKV-PSR 83 (131)
Q Consensus 9 ~~~L~~~Q~~~v~~l~~~~~~~~g~ilad~mGlGKT~~~ia~l~~~~~~~~~~~~~~~LIv~P~s-l~~---~W~~-~~~ 83 (131)
++...+-|..|+--+. .++ |-.-..|-|||+.+..-+...... ...++||+|.. |.. +|.. +.+
T Consensus 81 G~~pt~VQ~~~ip~ll----~G~--Iaea~TGeGKTlaf~LP~~l~aL~-----g~~vlVltptreLA~qd~e~~~~l~~ 149 (844)
T 1tf5_A 81 GMFPFKVQLMGGVALH----DGN--IAEMKTGEGKTLTSTLPVYLNALT-----GKGVHVVTVNEYLASRDAEQMGKIFE 149 (844)
T ss_dssp SCCCCHHHHHHHHHHH----TTS--EEECCTTSCHHHHHHHHHHHHHTT-----SSCEEEEESSHHHHHHHHHHHHHHHH
T ss_pred CCCCcHHHHHhhHHHh----CCC--EEEccCCcHHHHHHHHHHHHHHHc-----CCCEEEEeCCHHHHHHHHHHHHHHHh
Confidence 4466777887775555 333 777899999999766443322211 35799999964 444 3777 666
Q ss_pred ccCCCceeeccCC
Q psy2050 84 WRTSNCDKTSPVK 96 (131)
Q Consensus 84 ~~p~~~v~~~~~~ 96 (131)
+. ++++.+..++
T Consensus 150 ~l-gl~v~~i~gg 161 (844)
T 1tf5_A 150 FL-GLTVGLNLNS 161 (844)
T ss_dssp HT-TCCEEECCTT
T ss_pred hc-CCeEEEEeCC
Confidence 65 5666654443
No 72
>2fsf_A Preprotein translocase SECA subunit; ATPase, DNA-RNA helicase, protein translocation, protein transport; 2.00A {Escherichia coli} PDB: 2fsg_A* 2fsh_A* 2fsi_A* 2vda_A 3bxz_A*
Probab=95.21 E-value=0.11 Score=44.75 Aligned_cols=75 Identities=12% Similarity=-0.035 Sum_probs=46.5
Q ss_pred CCcchHHHHHHHHHHHHhhcccCeeeeCCCCCCHHHHHHHHHHHHHHhCCCCCCCCEEEEecCC-chh---hhhh-hhcc
Q psy2050 10 LKLAGYQLVGLNWLAVMHNQQLCGILADEMGLGKTIQVISFLAYLHEAGLSRPKSPHLIIVPSS-TLC---KYKV-PSRW 84 (131)
Q Consensus 10 ~~L~~~Q~~~v~~l~~~~~~~~g~ilad~mGlGKT~~~ia~l~~~~~~~~~~~~~~~LIv~P~s-l~~---~W~~-~~~~ 84 (131)
...++-|..|.--+. .+ .|---..|-|||+.+..-+...... ...++|++|.. |.. +|.. +.++
T Consensus 73 ~~p~~VQ~~~i~~ll----~G--~Iaem~TGsGKTlaf~LP~l~~~l~-----g~~vlVltPTreLA~Q~~e~~~~l~~~ 141 (853)
T 2fsf_A 73 MRHFDVQLLGGMVLN----ER--CIAEMRTGEGKTLTATLPAYLNALT-----GKGVHVVTVNDYLAQRDAENNRPLFEF 141 (853)
T ss_dssp CCCCHHHHHHHHHHH----SS--EEEECCTTSCHHHHHHHHHHHHHTT-----SSCCEEEESSHHHHHHHHHHHHHHHHH
T ss_pred CCCChHHHhhccccc----CC--eeeeecCCchHHHHHHHHHHHHHHc-----CCcEEEEcCCHHHHHHHHHHHHHHHHh
Confidence 456777888775554 33 3667788999999766443322211 35799999975 443 3666 5555
Q ss_pred cCCCceeeccCC
Q psy2050 85 RTSNCDKTSPVK 96 (131)
Q Consensus 85 ~p~~~v~~~~~~ 96 (131)
. ++++....++
T Consensus 142 l-gl~v~~i~GG 152 (853)
T 2fsf_A 142 L-GLTVGINLPG 152 (853)
T ss_dssp T-TCCEEECCTT
T ss_pred c-CCeEEEEeCC
Confidence 4 4666654443
No 73
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A
Probab=94.83 E-value=0.082 Score=43.59 Aligned_cols=66 Identities=20% Similarity=0.261 Sum_probs=47.7
Q ss_pred CCcchHHHHHHHHHHHHhhcccCeeeeCCCCCCHHHHHHHHHHHHHHhCCCCCCCCEEEEecCCch-hhhhh-hhc
Q psy2050 10 LKLAGYQLVGLNWLAVMHNQQLCGILADEMGLGKTIQVISFLAYLHEAGLSRPKSPHLIIVPSSTL-CKYKV-PSR 83 (131)
Q Consensus 10 ~~L~~~Q~~~v~~l~~~~~~~~g~ilad~mGlGKT~~~ia~l~~~~~~~~~~~~~~~LIv~P~sl~-~~W~~-~~~ 83 (131)
..|-+.|.+++.... ...-.++....|.|||.++..++..+.... ..++|+++|.... .+=.+ +.+
T Consensus 179 ~~ln~~Q~~av~~~l----~~~~~li~GppGTGKT~~~~~~i~~l~~~~----~~~ilv~a~tn~A~~~l~~~l~~ 246 (624)
T 2gk6_A 179 PDLNHSQVYAVKTVL----QRPLSLIQGPPGTGKTVTSATIVYHLARQG----NGPVLVCAPSNIAVDQLTEKIHQ 246 (624)
T ss_dssp CCCCHHHHHHHHHHH----TCSEEEEECCTTSCHHHHHHHHHHHHHTSS----SCCEEEEESSHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHh----cCCCeEEECCCCCCHHHHHHHHHHHHHHcC----CCeEEEEeCcHHHHHHHHHHHHh
Confidence 357899999997765 344567788899999999888776665421 5789999997654 34444 544
No 74
>1nkt_A Preprotein translocase SECA 1 subunit; preprotein translocation, ATPase, transmembrane transport, helicase-like motor domain; HET: ADP; 2.60A {Mycobacterium tuberculosis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1nl3_A
Probab=94.73 E-value=0.16 Score=44.02 Aligned_cols=75 Identities=15% Similarity=0.034 Sum_probs=46.7
Q ss_pred CCcchHHHHHHHHHHHHhhcccCeeeeCCCCCCHHHHHHHHHHHHHHhCCCCCCCCEEEEecCC-ch---hhhhh-hhcc
Q psy2050 10 LKLAGYQLVGLNWLAVMHNQQLCGILADEMGLGKTIQVISFLAYLHEAGLSRPKSPHLIIVPSS-TL---CKYKV-PSRW 84 (131)
Q Consensus 10 ~~L~~~Q~~~v~~l~~~~~~~~g~ilad~mGlGKT~~~ia~l~~~~~~~~~~~~~~~LIv~P~s-l~---~~W~~-~~~~ 84 (131)
...++-|..|+--+. .|.|.--..|-|||+.+..-+...... ...++||+|.. |. .+|.. +.++
T Consensus 110 ~rP~~VQ~~~ip~Ll------~G~Iaem~TGeGKTLa~~LP~~l~aL~-----g~~v~VvTpTreLA~Qdae~m~~l~~~ 178 (922)
T 1nkt_A 110 QRPFDVQVMGAAALH------LGNVAEMKTGEGKTLTCVLPAYLNALA-----GNGVHIVTVNDYLAKRDSEWMGRVHRF 178 (922)
T ss_dssp CCCCHHHHHHHHHHH------TTEEEECCTTSCHHHHTHHHHHHHHTT-----TSCEEEEESSHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHhHh------cCCEEEecCCCccHHHHHHHHHHHHHh-----CCCeEEEeCCHHHHHHHHHHHHHHHhh
Confidence 355666777665444 344777899999999765433222222 35799999964 44 35777 7666
Q ss_pred cCCCceeeccCC
Q psy2050 85 RTSNCDKTSPVK 96 (131)
Q Consensus 85 ~p~~~v~~~~~~ 96 (131)
. ++++.+..++
T Consensus 179 l-GLsv~~i~gg 189 (922)
T 1nkt_A 179 L-GLQVGVILAT 189 (922)
T ss_dssp T-TCCEEECCTT
T ss_pred c-CCeEEEEeCC
Confidence 5 5666654443
No 75
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=94.63 E-value=0.15 Score=40.25 Aligned_cols=61 Identities=15% Similarity=0.138 Sum_probs=45.5
Q ss_pred CCcchHHHHHHHHHHHHhhccc-CeeeeCCCCCCHHHHHHHHHHHHHHhCCCCCCCCEEEEecCCc
Q psy2050 10 LKLAGYQLVGLNWLAVMHNQQL-CGILADEMGLGKTIQVISFLAYLHEAGLSRPKSPHLIIVPSST 74 (131)
Q Consensus 10 ~~L~~~Q~~~v~~l~~~~~~~~-g~ilad~mGlGKT~~~ia~l~~~~~~~~~~~~~~~LIv~P~sl 74 (131)
..|-+-|++++..+......+. ..++-...|.|||..+.+++..+...+ ..++++++|...
T Consensus 24 ~~Ln~~Q~~av~~~~~~i~~~~~~~li~G~aGTGKT~ll~~~~~~l~~~~----~~~il~~a~T~~ 85 (459)
T 3upu_A 24 DDLTEGQKNAFNIVMKAIKEKKHHVTINGPAGTGATTLTKFIIEALISTG----ETGIILAAPTHA 85 (459)
T ss_dssp SCCCHHHHHHHHHHHHHHHSSSCEEEEECCTTSCHHHHHHHHHHHHHHTT----CCCEEEEESSHH
T ss_pred ccCCHHHHHHHHHHHHHHhcCCCEEEEEeCCCCCHHHHHHHHHHHHHhcC----CceEEEecCcHH
Confidence 3577889999987765544444 457788899999988887777776654 257899999755
No 76
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=94.61 E-value=0.02 Score=45.12 Aligned_cols=47 Identities=17% Similarity=0.190 Sum_probs=34.4
Q ss_pred cCeeeeCCCCCCHHHHHHH-HHHHHHHhCCCCCCCCEEEEecC-Cchhhhhh-hh
Q psy2050 31 LCGILADEMGLGKTIQVIS-FLAYLHEAGLSRPKSPHLIIVPS-STLCKYKV-PS 82 (131)
Q Consensus 31 ~g~ilad~mGlGKT~~~ia-~l~~~~~~~~~~~~~~~LIv~P~-sl~~~W~~-~~ 82 (131)
+..++..+.|.|||..++. ++...... ...++|++|. .+..|+.+ ++
T Consensus 3 ~~~lv~a~TGsGKT~~~l~~~l~~~~~~-----g~~~lvl~Pt~~La~Q~~~~~~ 52 (431)
T 2v6i_A 3 ELTVLDLHPGAGKTRRVLPQLVREAVKK-----RLRTVILAPTRVVASEMYEALR 52 (431)
T ss_dssp CEEEEECCTTSCTTTTHHHHHHHHHHHT-----TCCEEEEESSHHHHHHHHHHTT
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHHHHhC-----CCCEEEECcHHHHHHHHHHHhC
Confidence 4568899999999999844 44333332 3689999996 56778888 76
No 77
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=94.16 E-value=0.14 Score=41.93 Aligned_cols=59 Identities=17% Similarity=0.093 Sum_probs=45.1
Q ss_pred CCCcchHHHHHHHHHHHHhhcccCeeeeCCCCCCHHHHHHHHHHHHHHhCCCCCCCCEEEEecCCchh
Q psy2050 9 NLKLAGYQLVGLNWLAVMHNQQLCGILADEMGLGKTIQVISFLAYLHEAGLSRPKSPHLIIVPSSTLC 76 (131)
Q Consensus 9 ~~~L~~~Q~~~v~~l~~~~~~~~g~ilad~mGlGKT~~~ia~l~~~~~~~~~~~~~~~LIv~P~sl~~ 76 (131)
...|-+.|++++..+. ...-.++....|.|||..+.+++..+... ..++++++|.....
T Consensus 187 ~~~L~~~Q~~Av~~~~----~~~~~~I~G~pGTGKTt~i~~l~~~l~~~-----g~~Vl~~ApT~~Aa 245 (574)
T 3e1s_A 187 RKGLSEEQASVLDQLA----GHRLVVLTGGPGTGKSTTTKAVADLAESL-----GLEVGLCAPTGKAA 245 (574)
T ss_dssp TTTCCHHHHHHHHHHT----TCSEEEEECCTTSCHHHHHHHHHHHHHHT-----TCCEEEEESSHHHH
T ss_pred cCCCCHHHHHHHHHHH----hCCEEEEEcCCCCCHHHHHHHHHHHHHhc-----CCeEEEecCcHHHH
Confidence 4678899999998766 45567788899999998887776655554 37789999976443
No 78
>1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A*
Probab=94.07 E-value=0.029 Score=44.26 Aligned_cols=51 Identities=22% Similarity=0.279 Sum_probs=37.1
Q ss_pred cccCeeeeCCCCCCHHHHHHH-HHHHHHHhCCCCCCCCEEEEecC-Cchhhhhh-hhcc
Q psy2050 29 QQLCGILADEMGLGKTIQVIS-FLAYLHEAGLSRPKSPHLIIVPS-STLCKYKV-PSRW 84 (131)
Q Consensus 29 ~~~g~ilad~mGlGKT~~~ia-~l~~~~~~~~~~~~~~~LIv~P~-sl~~~W~~-~~~~ 84 (131)
.++..++..+.|.|||+.++. ++..+... ...+||++|. .+..|+.+ +..+
T Consensus 7 ~g~~vlv~a~TGSGKT~~~l~~~l~~~~~~-----~~~~lil~Ptr~La~Q~~~~l~~~ 60 (440)
T 1yks_A 7 KGMTTVLDFHPGAGKTRRFLPQILAECARR-----RLRTLVLAPTRVVLSEMKEAFHGL 60 (440)
T ss_dssp TTCEEEECCCTTSSTTTTHHHHHHHHHHHT-----TCCEEEEESSHHHHHHHHHHTTTS
T ss_pred CCCCEEEEcCCCCCHHHHHHHHHHHHHHhc-----CCeEEEEcchHHHHHHHHHHHhcC
Confidence 456678899999999999744 33333332 3679999996 56778888 8755
No 79
>2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay, zinc-finger, ATP-binding, metal-BIN UPF2, UPF1, helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A
Probab=93.94 E-value=0.16 Score=43.28 Aligned_cols=66 Identities=20% Similarity=0.261 Sum_probs=47.4
Q ss_pred CCcchHHHHHHHHHHHHhhcccCeeeeCCCCCCHHHHHHHHHHHHHHhCCCCCCCCEEEEecCCch-hhhhh-hhc
Q psy2050 10 LKLAGYQLVGLNWLAVMHNQQLCGILADEMGLGKTIQVISFLAYLHEAGLSRPKSPHLIIVPSSTL-CKYKV-PSR 83 (131)
Q Consensus 10 ~~L~~~Q~~~v~~l~~~~~~~~g~ilad~mGlGKT~~~ia~l~~~~~~~~~~~~~~~LIv~P~sl~-~~W~~-~~~ 83 (131)
..|-+.|++++.... .+.-.++....|.|||.+...++..+.... ..++|+++|.... .+=.+ +.+
T Consensus 355 ~~Ln~~Q~~Av~~~l----~~~~~lI~GppGTGKT~ti~~~i~~l~~~~----~~~ilv~a~tn~A~~~l~~~l~~ 422 (800)
T 2wjy_A 355 PDLNHSQVYAVKTVL----QRPLSLIQGPPGTGKTVTSATIVYHLARQG----NGPVLVCAPSNIAVDQLTEKIHQ 422 (800)
T ss_dssp CCCCHHHHHHHHHHH----TSSEEEEECCTTSCHHHHHHHHHHHHHTTC----SSCEEEEESSHHHHHHHHHHHHT
T ss_pred cCCCHHHHHHHHHhc----cCCeEEEEcCCCCCHHHHHHHHHHHHHHcC----CCcEEEEcCcHHHHHHHHHHHHH
Confidence 457899999997765 344567888999999998888776665431 4789999997654 33333 443
No 80
>2xzl_A ATP-dependent helicase NAM7; hydrolase-RNA complex, NMD, RNA degradation, allosteric REGU; HET: ADP 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=93.84 E-value=0.12 Score=44.10 Aligned_cols=66 Identities=18% Similarity=0.201 Sum_probs=47.5
Q ss_pred CCcchHHHHHHHHHHHHhhcccCeeeeCCCCCCHHHHHHHHHHHHHHhCCCCCCCCEEEEecCCch-hhhhh-hhc
Q psy2050 10 LKLAGYQLVGLNWLAVMHNQQLCGILADEMGLGKTIQVISFLAYLHEAGLSRPKSPHLIIVPSSTL-CKYKV-PSR 83 (131)
Q Consensus 10 ~~L~~~Q~~~v~~l~~~~~~~~g~ilad~mGlGKT~~~ia~l~~~~~~~~~~~~~~~LIv~P~sl~-~~W~~-~~~ 83 (131)
..|-+.|++|+..+. .+.-.++-...|.|||.++..++..+.... ..++|+++|.... .+=.+ +.+
T Consensus 359 ~~Ln~~Q~~Av~~~l----~~~~~lI~GppGTGKT~~i~~~i~~l~~~~----~~~ILv~a~tn~A~d~l~~rL~~ 426 (802)
T 2xzl_A 359 AQLNSSQSNAVSHVL----QRPLSLIQGPPGTGKTVTSATIVYHLSKIH----KDRILVCAPSNVAVDHLAAKLRD 426 (802)
T ss_dssp CCCCHHHHHHHHHHT----TCSEEEEECSTTSSHHHHHHHHHHHHHHHH----CCCEEEEESSHHHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHh----cCCCEEEECCCCCCHHHHHHHHHHHHHhCC----CCeEEEEcCcHHHHHHHHHHHHh
Confidence 357899999997765 344467788899999999888776665431 4789999997654 34334 544
No 81
>2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane, nucleotide-binding, RNA replication, transmembrane, viral protein; 1.80A {Japanese encephalitis virus} PDB: 2v8o_A 2qeq_A
Probab=93.79 E-value=0.033 Score=44.16 Aligned_cols=49 Identities=12% Similarity=0.160 Sum_probs=36.2
Q ss_pred cccCeeeeCCCCCCHHHHH-HHHHHHHHHhCCCCCCCCEEEEecC-Cchhhhhh-hh
Q psy2050 29 QQLCGILADEMGLGKTIQV-ISFLAYLHEAGLSRPKSPHLIIVPS-STLCKYKV-PS 82 (131)
Q Consensus 29 ~~~g~ilad~mGlGKT~~~-ia~l~~~~~~~~~~~~~~~LIv~P~-sl~~~W~~-~~ 82 (131)
.+...+++.+.|.|||.+. +.++...... ...+||++|. .++.|+.+ +.
T Consensus 20 ~~~~vlv~a~TGsGKT~~~~l~il~~~~~~-----~~~~lvl~Ptr~La~Q~~~~l~ 71 (459)
T 2z83_A 20 KRQMTVLDLHPGSGKTRKILPQIIKDAIQQ-----RLRTAVLAPTRVVAAEMAEALR 71 (459)
T ss_dssp TTCEEEECCCTTSCTTTTHHHHHHHHHHHT-----TCCEEEEECSHHHHHHHHHHTT
T ss_pred cCCcEEEECCCCCCHHHHHHHHHHHHHHhC-----CCcEEEECchHHHHHHHHHHhc
Confidence 5566888999999999985 4444333332 3679999996 57788888 87
No 82
>2ipc_A Preprotein translocase SECA subunit; nucleotide binding fold, ATPase, parallel dimer; 2.80A {Thermus thermophilus}
Probab=93.29 E-value=0.42 Score=41.70 Aligned_cols=75 Identities=15% Similarity=0.016 Sum_probs=45.9
Q ss_pred CCCcchHHHHHHHHHHHHhhcccCeeeeCCCCCCHHHHHHHHHHHHHHhCCCCCCCCEEEEecCCc-hhh---hhh-hhc
Q psy2050 9 NLKLAGYQLVGLNWLAVMHNQQLCGILADEMGLGKTIQVISFLAYLHEAGLSRPKSPHLIIVPSST-LCK---YKV-PSR 83 (131)
Q Consensus 9 ~~~L~~~Q~~~v~~l~~~~~~~~g~ilad~mGlGKT~~~ia~l~~~~~~~~~~~~~~~LIv~P~sl-~~~---W~~-~~~ 83 (131)
+....+-|..++--+. ++. |..-..|-|||+.+...+...... ...++|++|..- ..| |.. +-+
T Consensus 77 G~~Pt~VQ~~~ip~Ll----qG~--IaeakTGeGKTLvf~Lp~~L~aL~-----G~qv~VvTPTreLA~Qdae~m~~l~~ 145 (997)
T 2ipc_A 77 GMRHFDVQLIGGAVLH----EGK--IAEMKTGEGKTLVATLAVALNALT-----GKGVHVVTVNDYLARRDAEWMGPVYR 145 (997)
T ss_dssp CCCCCHHHHHHHHHHH----TTS--EEECCSTHHHHHHHHHHHHHHHTT-----CSCCEEEESSHHHHHHHHHHHHHHHH
T ss_pred CCCCcHHHHhhccccc----CCc--eeeccCCCchHHHHHHHHHHHHHh-----CCCEEEEeCCHHHHHHHHHHHHHHHH
Confidence 3466778888875555 333 667788999999765444222222 257999999764 444 555 544
Q ss_pred ccCCCceeeccC
Q psy2050 84 WRTSNCDKTSPV 95 (131)
Q Consensus 84 ~~p~~~v~~~~~ 95 (131)
+. ++++....+
T Consensus 146 ~l-GLsv~~i~G 156 (997)
T 2ipc_A 146 GL-GLSVGVIQH 156 (997)
T ss_dssp TT-TCCEEECCT
T ss_pred hc-CCeEEEEeC
Confidence 44 355555333
No 83
>3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA compl protease/ntpase/helicase, hydrolase; 1.95A {Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4b71_A* 4b73_A* 4b74_A* 4b76_A* 4b75_A* 4a92_A* 1cu1_A 4b6e_A* 4b6f_A* 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A* 3kqh_A 3kqk_A ...
Probab=93.08 E-value=0.011 Score=49.47 Aligned_cols=49 Identities=20% Similarity=0.162 Sum_probs=34.6
Q ss_pred cccCeeeeCCCCCCHHHHHHHHHHHHHHhCCCCCCCCEEEEecCC-chhhhhh-hhccc
Q psy2050 29 QQLCGILADEMGLGKTIQVISFLAYLHEAGLSRPKSPHLIIVPSS-TLCKYKV-PSRWR 85 (131)
Q Consensus 29 ~~~g~ilad~mGlGKT~~~ia~l~~~~~~~~~~~~~~~LIv~P~s-l~~~W~~-~~~~~ 85 (131)
.++..++..+.|.|||.+....+.. . ...+||++|.. +..|+.+ +.+..
T Consensus 231 ~~~~vlv~ApTGSGKT~a~~l~ll~---~-----g~~vLVl~PTReLA~Qia~~l~~~~ 281 (666)
T 3o8b_A 231 SFQVAHLHAPTGSGKSTKVPAAYAA---Q-----GYKVLVLNPSVAATLGFGAYMSKAH 281 (666)
T ss_dssp SCEEEEEECCTTSCTTTHHHHHHHH---T-----TCCEEEEESCHHHHHHHHHHHHHHH
T ss_pred cCCeEEEEeCCchhHHHHHHHHHHH---C-----CCeEEEEcchHHHHHHHHHHHHHHh
Confidence 3445678899999999766654432 1 35899999975 5678877 66554
No 84
>2wv9_A Flavivirin protease NS2B regulatory subunit, FLAV protease NS3 catalytic subunit; nucleotide-binding, capsid protein; 2.75A {Murray valley encephalitis virus}
Probab=92.96 E-value=0.052 Score=45.44 Aligned_cols=52 Identities=12% Similarity=0.135 Sum_probs=38.1
Q ss_pred cccCeeeeCCCCCCHHHHH-HHHHHHHHHhCCCCCCCCEEEEecC-Cchhhhhh-hhccc
Q psy2050 29 QQLCGILADEMGLGKTIQV-ISFLAYLHEAGLSRPKSPHLIIVPS-STLCKYKV-PSRWR 85 (131)
Q Consensus 29 ~~~g~ilad~mGlGKT~~~-ia~l~~~~~~~~~~~~~~~LIv~P~-sl~~~W~~-~~~~~ 85 (131)
.++..++..+.|.|||+.+ ++++..+... ...+||++|. .+..|+.+ ++.+.
T Consensus 240 ~g~dvlv~apTGSGKTl~~ll~il~~l~~~-----~~~~lilaPTr~La~Q~~~~l~~~~ 294 (673)
T 2wv9_A 240 KRQLTVLDLHPGAGKTRRILPQIIKDAIQK-----RLRTAVLAPTRVVAAEMAEALRGLP 294 (673)
T ss_dssp TTCEEEECCCTTTTTTTTHHHHHHHHHHHT-----TCCEEEEESSHHHHHHHHHHTTTSC
T ss_pred cCCeEEEEeCCCCCHHHHHHHHHHHHHHhC-----CCcEEEEccHHHHHHHHHHHHhcCC
Confidence 5567788999999999996 4444333332 3679999996 46778988 88663
No 85
>2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A
Probab=90.75 E-value=0.13 Score=40.63 Aligned_cols=49 Identities=18% Similarity=0.159 Sum_probs=33.8
Q ss_pred cccCe-eeeCCCCCCHHHHH-HHHHHHHHHhCCCCCCCCEEEEecC-Cchhhhhh-hh
Q psy2050 29 QQLCG-ILADEMGLGKTIQV-ISFLAYLHEAGLSRPKSPHLIIVPS-STLCKYKV-PS 82 (131)
Q Consensus 29 ~~~g~-ilad~mGlGKT~~~-ia~l~~~~~~~~~~~~~~~LIv~P~-sl~~~W~~-~~ 82 (131)
.+... ++..+.|.|||... +.++...... ...+||++|. .+..|+.+ +.
T Consensus 17 ~~~~~~lv~a~TGsGKT~~~~~~~l~~~~~~-----~~~~lvl~Ptr~La~Q~~~~l~ 69 (451)
T 2jlq_A 17 RKKRLTIMDLHPGAGKTKRILPSIVREALLR-----RLRTLILAPTRVVAAEMEEALR 69 (451)
T ss_dssp STTCEEEECCCTTSSCCTTHHHHHHHHHHHT-----TCCEEEEESSHHHHHHHHHHTT
T ss_pred hcCCeEEEECCCCCCHhhHHHHHHHHHHHhc-----CCcEEEECCCHHHHHHHHHHhc
Confidence 33444 77889999999974 4444333332 3689999996 56778888 75
No 86
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=90.65 E-value=0.43 Score=34.44 Aligned_cols=35 Identities=29% Similarity=0.312 Sum_probs=27.2
Q ss_pred eeeeCCCCCCHHHHHHHHHHHHHHhCCCCCCCCEEEEecC
Q psy2050 33 GILADEMGLGKTIQVISFLAYLHEAGLSRPKSPHLIIVPS 72 (131)
Q Consensus 33 ~ilad~mGlGKT~~~ia~l~~~~~~~~~~~~~~~LIv~P~ 72 (131)
.++..+||.|||..++.++......+ .+++++.|.
T Consensus 15 ~litG~mGsGKTT~ll~~~~r~~~~g-----~kVli~~~~ 49 (223)
T 2b8t_A 15 EFITGPMFAGKTAELIRRLHRLEYAD-----VKYLVFKPK 49 (223)
T ss_dssp EEEECSTTSCHHHHHHHHHHHHHHTT-----CCEEEEEEC
T ss_pred EEEECCCCCcHHHHHHHHHHHHHhcC-----CEEEEEEec
Confidence 45689999999999998877665543 578888774
No 87
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=90.48 E-value=0.83 Score=37.54 Aligned_cols=59 Identities=19% Similarity=0.215 Sum_probs=40.6
Q ss_pred chHHHHHHHHHHHHhhcccCeeeeCCCCCCHHHHHHHHHHHHHHhCCCCCCCCEEEEecCCchh
Q psy2050 13 AGYQLVGLNWLAVMHNQQLCGILADEMGLGKTIQVISFLAYLHEAGLSRPKSPHLIIVPSSTLC 76 (131)
Q Consensus 13 ~~~Q~~~v~~l~~~~~~~~g~ilad~mGlGKT~~~ia~l~~~~~~~~~~~~~~~LIv~P~sl~~ 76 (131)
-+.|++++.-.. .++-.++....|.|||..+..++..+...... ...++++++|.....
T Consensus 151 ~~~Q~~Ai~~~l----~~~~~vi~G~pGTGKTt~l~~ll~~l~~~~~~-~~~~vll~APTg~AA 209 (608)
T 1w36_D 151 INWQKVAAAVAL----TRRISVISGGPGTGKTTTVAKLLAALIQMADG-ERCRIRLAAPTGKAA 209 (608)
T ss_dssp CCHHHHHHHHHH----TBSEEEEECCTTSTHHHHHHHHHHHHHHTCSS-CCCCEEEEBSSHHHH
T ss_pred CHHHHHHHHHHh----cCCCEEEEeCCCCCHHHHHHHHHHHHHHhhhc-CCCeEEEEeCChhHH
Confidence 467999987665 55667888899999997776666555432111 135789999976533
No 88
>2whx_A Serine protease/ntpase/helicase NS3; transcription, hydrolase, ATP-binding, reticulum, nucleotidyltransferase, multifunctional enzyme; HET: ADP; 2.20A {Dengue virus 4} PDB: 2vbc_A 2wzq_A
Probab=90.04 E-value=0.17 Score=41.89 Aligned_cols=50 Identities=18% Similarity=0.202 Sum_probs=37.7
Q ss_pred cccCeeeeCCCCCCHHHHH-HHHHHHHHHhCCCCCCCCEEEEecC-Cchhhhhh-hhc
Q psy2050 29 QQLCGILADEMGLGKTIQV-ISFLAYLHEAGLSRPKSPHLIIVPS-STLCKYKV-PSR 83 (131)
Q Consensus 29 ~~~g~ilad~mGlGKT~~~-ia~l~~~~~~~~~~~~~~~LIv~P~-sl~~~W~~-~~~ 83 (131)
.++..++..+.|.|||... +.++..+... ...+||++|. .+..|+.+ ++.
T Consensus 185 ~g~dvlv~a~TGSGKT~~~~lpil~~l~~~-----~~~vLvl~PtreLa~Qi~~~l~~ 237 (618)
T 2whx_A 185 KKRLTIMDLHPGAGKTKRILPSIVREALKR-----RLRTLILAPTRVVAAEMEEALRG 237 (618)
T ss_dssp TTCEEEECCCTTSSTTTTHHHHHHHHHHHT-----TCCEEEEESSHHHHHHHHHHTTT
T ss_pred cCCeEEEEcCCCCCHHHHHHHHHHHHHHhC-----CCeEEEEcChHHHHHHHHHHhcC
Confidence 6677889999999999985 5555444432 3689999996 56778888 863
No 89
>3rc3_A ATP-dependent RNA helicase SUPV3L1, mitochondrial; SUV3, nucleus, hydrolase; HET: ANP; 2.08A {Homo sapiens} PDB: 3rc8_A
Probab=90.04 E-value=0.55 Score=39.30 Aligned_cols=57 Identities=12% Similarity=-0.078 Sum_probs=36.2
Q ss_pred cccCeeeeCCCCCCHHHHHHHHHHHHHHhCCCCCCCCEEEEecCC-chhhhhh-hhcccCCCceeeccCC
Q psy2050 29 QQLCGILADEMGLGKTIQVISFLAYLHEAGLSRPKSPHLIIVPSS-TLCKYKV-PSRWRTSNCDKTSPVK 96 (131)
Q Consensus 29 ~~~g~ilad~mGlGKT~~~ia~l~~~~~~~~~~~~~~~LIv~P~s-l~~~W~~-~~~~~p~~~v~~~~~~ 96 (131)
.++..+++.+.|.|||..++..+. .. ...++++|.. +..|..+ +++. +.++....|+
T Consensus 154 ~rk~vlv~apTGSGKT~~al~~l~---~~------~~gl~l~PtR~LA~Qi~~~l~~~--g~~v~lltG~ 212 (677)
T 3rc3_A 154 QRKIIFHSGPTNSGKTYHAIQKYF---SA------KSGVYCGPLKLLAHEIFEKSNAA--GVPCDLVTGE 212 (677)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHH---HS------SSEEEEESSHHHHHHHHHHHHHT--TCCEEEECSS
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHH---hc------CCeEEEeCHHHHHHHHHHHHHhc--CCcEEEEECC
Confidence 334568899999999995554432 21 3349999964 5667777 7765 3444443333
No 90
>3lfu_A DNA helicase II; SF1 helicase, ATP-binding, DNA damage, DNA REP replication, DNA-binding, hydrolase, nucleotide-B SOS response; HET: DNA; 1.80A {Escherichia coli} PDB: 2is6_A* 2is2_A* 2is1_A* 2is4_A*
Probab=89.99 E-value=0.65 Score=37.76 Aligned_cols=68 Identities=12% Similarity=0.061 Sum_probs=45.8
Q ss_pred CCcchHHHHHHHHHHHHhhcccCeeeeCCCCCCHHHHHHHHHHHHHHhCCCCCCCCEEEEecCCch-hhhhh-hhcc
Q psy2050 10 LKLAGYQLVGLNWLAVMHNQQLCGILADEMGLGKTIQVISFLAYLHEAGLSRPKSPHLIIVPSSTL-CKYKV-PSRW 84 (131)
Q Consensus 10 ~~L~~~Q~~~v~~l~~~~~~~~g~ilad~mGlGKT~~~ia~l~~~~~~~~~~~~~~~LIv~P~sl~-~~W~~-~~~~ 84 (131)
..|-+-|++++.. ..+..++-...|.|||.+.+.-+..+...+.. ++...|+++++.-. .+-.+ +.+.
T Consensus 8 ~~Ln~~Q~~av~~------~~~~~lV~a~aGsGKT~~l~~ri~~l~~~~~~-~~~~iL~ltft~~aa~e~~~rl~~~ 77 (647)
T 3lfu_A 8 DSLNDKQREAVAA------PRSNLLVLAGAGSGKTRVLVHRIAWLMSVENC-SPYSIMAVTFTNKAAAEMRHRIGQL 77 (647)
T ss_dssp TTCCHHHHHHHTC------CSSCEEEEECTTSCHHHHHHHHHHHHHHTSCC-CGGGEEEEESSHHHHHHHHHHHHHH
T ss_pred hcCCHHHHHHHhC------CCCCEEEEECCCCCHHHHHHHHHHHHHHhCCC-ChhhEEEEeccHHHHHHHHHHHHHH
Confidence 3578899999941 23334555668999999999888877765332 15789999986543 33444 5544
No 91
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=88.57 E-value=0.87 Score=32.83 Aligned_cols=33 Identities=21% Similarity=0.259 Sum_probs=26.2
Q ss_pred eeCCCCCCHHHHHHHHHHHHHHhCCCCCCCCEEEEecC
Q psy2050 35 LADEMGLGKTIQVISFLAYLHEAGLSRPKSPHLIIVPS 72 (131)
Q Consensus 35 lad~mGlGKT~~~ia~l~~~~~~~~~~~~~~~LIv~P~ 72 (131)
...+||-|||..++..+...... ..+++|+.|.
T Consensus 33 itG~MgsGKTT~lL~~a~r~~~~-----g~kVli~k~~ 65 (214)
T 2j9r_A 33 ICGSMFSGKSEELIRRVRRTQFA-----KQHAIVFKPC 65 (214)
T ss_dssp EECSTTSCHHHHHHHHHHHHHHT-----TCCEEEEECC
T ss_pred EECCCCCcHHHHHHHHHHHHHHC-----CCEEEEEEec
Confidence 58899999999999887666554 3778888874
No 92
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=87.64 E-value=1.1 Score=31.50 Aligned_cols=35 Identities=20% Similarity=0.234 Sum_probs=26.5
Q ss_pred eeeeCCCCCCHHHHHHHHHHHHHHhCCCCCCCCEEEEecC
Q psy2050 33 GILADEMGLGKTIQVISFLAYLHEAGLSRPKSPHLIIVPS 72 (131)
Q Consensus 33 ~ilad~mGlGKT~~~ia~l~~~~~~~~~~~~~~~LIv~P~ 72 (131)
-++...||.|||..++..+...... ..+++++.|.
T Consensus 11 ~v~~G~mgsGKTT~ll~~a~r~~~~-----g~kV~v~k~~ 45 (191)
T 1xx6_A 11 EVIVGPMYSGKSEELIRRIRRAKIA-----KQKIQVFKPE 45 (191)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHHHT-----TCCEEEEEEC
T ss_pred EEEECCCCCcHHHHHHHHHHHHHHC-----CCEEEEEEec
Confidence 3557899999999888877665544 3778888875
No 93
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=87.40 E-value=0.8 Score=38.82 Aligned_cols=65 Identities=17% Similarity=0.104 Sum_probs=36.1
Q ss_pred HHHHHHHHHHHHhhcccCeeeeCCCCCCHHHHHHHHHHHHHHhCCCCCCCCEEEEecCC-chhhhhh-hhcc
Q psy2050 15 YQLVGLNWLAVMHNQQLCGILADEMGLGKTIQVISFLAYLHEAGLSRPKSPHLIIVPSS-TLCKYKV-PSRW 84 (131)
Q Consensus 15 ~Q~~~v~~l~~~~~~~~g~ilad~mGlGKT~~~ia~l~~~~~~~~~~~~~~~LIv~P~s-l~~~W~~-~~~~ 84 (131)
.|++++.-.+ ..+...++..+.|.|||.+.-.++......... ...+++++|.. +..|..+ +.+.
T Consensus 97 ~q~~~i~~~l---~~~~~vii~gpTGSGKTtllp~ll~~~~~~~~~--g~~ilvl~P~r~La~q~~~~l~~~ 163 (773)
T 2xau_A 97 AQRDEFLKLY---QNNQIMVFVGETGSGKTTQIPQFVLFDEMPHLE--NTQVACTQPRRVAAMSVAQRVAEE 163 (773)
T ss_dssp GGHHHHHHHH---HHCSEEEEECCTTSSHHHHHHHHHHHHHCGGGG--TCEEEEEESCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHH---hCCCeEEEECCCCCCHHHHHHHHHHHhccccCC--CceEEecCchHHHHHHHHHHHHHH
Confidence 4555543333 245567889999999999433332221111100 23488899964 4556666 5443
No 94
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=86.90 E-value=0.97 Score=31.22 Aligned_cols=35 Identities=20% Similarity=0.336 Sum_probs=25.4
Q ss_pred eeeeCCCCCCHHHHHHHHHHHHHHhCCCCCCCCEEEEecC
Q psy2050 33 GILADEMGLGKTIQVISFLAYLHEAGLSRPKSPHLIIVPS 72 (131)
Q Consensus 33 ~ilad~mGlGKT~~~ia~l~~~~~~~~~~~~~~~LIv~P~ 72 (131)
-++...||.|||..++..+......+ .+++++.|.
T Consensus 6 ~vi~G~~gsGKTT~ll~~~~~~~~~g-----~~v~~~~~~ 40 (184)
T 2orw_A 6 TVITGPMYSGKTTELLSFVEIYKLGK-----KKVAVFKPK 40 (184)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHHHTT-----CEEEEEEEC
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCC-----CeEEEEeec
Confidence 35678899999999887776554432 567777664
No 95
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=84.69 E-value=1.7 Score=32.64 Aligned_cols=46 Identities=11% Similarity=0.082 Sum_probs=36.3
Q ss_pred cchHHHHHHHHHHHHhhccc---CeeeeCCCCCCHHHHHHHHHHHHHHh
Q psy2050 12 LAGYQLVGLNWLAVMHNQQL---CGILADEMGLGKTIQVISFLAYLHEA 57 (131)
Q Consensus 12 L~~~Q~~~v~~l~~~~~~~~---g~ilad~mGlGKT~~~ia~l~~~~~~ 57 (131)
++|+|.+....+....+.++ .-++..+.|.|||..+.++...+...
T Consensus 3 ~~pw~~~~~~~l~~~i~~~~~~~a~L~~G~~G~GKt~~a~~la~~l~~~ 51 (334)
T 1a5t_A 3 WYPWLRPDFEKLVASYQAGRGHHALLIQALPGMGDDALIYALSRYLLCQ 51 (334)
T ss_dssp CCGGGHHHHHHHHHHHHTTCCCSEEEEECCTTSCHHHHHHHHHHHHTCS
T ss_pred CCCchHHHHHHHHHHHHcCCcceeEEEECCCCchHHHHHHHHHHHHhCC
Confidence 68999999888777666554 24779999999999999888776543
No 96
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=83.91 E-value=1.3 Score=34.90 Aligned_cols=41 Identities=20% Similarity=0.139 Sum_probs=32.9
Q ss_pred cCeeeeCCCCCCHHHHHHHHHHHHHHhCCCCCCCCEEEEecCCchhhhh
Q psy2050 31 LCGILADEMGLGKTIQVISFLAYLHEAGLSRPKSPHLIIVPSSTLCKYK 79 (131)
Q Consensus 31 ~g~ilad~mGlGKT~~~ia~l~~~~~~~~~~~~~~~LIv~P~sl~~~W~ 79 (131)
+|.+|....|.|||+.|-|+.... ..+++.|..+.++..|.
T Consensus 183 rGvLL~GPPGTGKTllAkAiA~e~--------~~~f~~v~~s~l~sk~v 223 (405)
T 4b4t_J 183 KGVILYGPPGTGKTLLARAVAHHT--------DCKFIRVSGAELVQKYI 223 (405)
T ss_dssp CCEEEESCSSSSHHHHHHHHHHHH--------TCEEEEEEGGGGSCSST
T ss_pred CceEEeCCCCCCHHHHHHHHHHhh--------CCCceEEEhHHhhcccc
Confidence 467889999999999998877655 57788888888877773
No 97
>1uaa_A REP helicase, protein (ATP-dependent DNA helicase REP.); complex (helicase/DNA), DNA unwinding, hydrolase/DNA complex; HET: DNA; 3.00A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19
Probab=83.72 E-value=2 Score=35.30 Aligned_cols=67 Identities=15% Similarity=0.065 Sum_probs=45.0
Q ss_pred CcchHHHHHHHHHHHHhhcccCeeeeCCCCCCHHHHHHHHHHHHHHh-CCCCCCCCEEEEecCCc-hhhhhh-hhccc
Q psy2050 11 KLAGYQLVGLNWLAVMHNQQLCGILADEMGLGKTIQVISFLAYLHEA-GLSRPKSPHLIIVPSST-LCKYKV-PSRWR 85 (131)
Q Consensus 11 ~L~~~Q~~~v~~l~~~~~~~~g~ilad~mGlGKT~~~ia~l~~~~~~-~~~~~~~~~LIv~P~sl-~~~W~~-~~~~~ 85 (131)
.|-+-|++++.. ..+..++--..|.|||...+.-+..+... +.. +...|+|+.+.- ...-.+ +.+..
T Consensus 2 ~L~~~Q~~av~~------~~~~~lV~AgaGSGKT~~l~~ri~~ll~~~~~~--~~~IL~lTfT~~Aa~em~~Rl~~~l 71 (673)
T 1uaa_A 2 RLNPGQQQAVEF------VTGPCLVLAGAGSGKTRVITNKIAHLIRGCGYQ--ARHIAAVTFTNKAAREMKERVGQTL 71 (673)
T ss_dssp CCCHHHHHHHHC------CSSEEEECCCTTSCHHHHHHHHHHHHHHHHCCC--GGGEEEEESSHHHHHHHHHHHHHHS
T ss_pred CCCHHHHHHHhC------CCCCEEEEeCCCCChHHHHHHHHHHHHHhcCCC--HHHeEEEeccHHHHHHHHHHHHHHc
Confidence 477889999843 22334556789999999998887777655 333 577899987644 334444 65544
No 98
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=83.62 E-value=4.5 Score=27.45 Aligned_cols=26 Identities=23% Similarity=0.227 Sum_probs=19.8
Q ss_pred cCeeeeCCCCCCHHHHHHHHHHHHHH
Q psy2050 31 LCGILADEMGLGKTIQVISFLAYLHE 56 (131)
Q Consensus 31 ~g~ilad~mGlGKT~~~ia~l~~~~~ 56 (131)
.+-+|..+.|.|||..+-++......
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~~~~ 80 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANELAK 80 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHHT
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHH
Confidence 44567899999999988877655543
No 99
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=82.86 E-value=1.3 Score=35.20 Aligned_cols=41 Identities=17% Similarity=0.181 Sum_probs=32.4
Q ss_pred cCeeeeCCCCCCHHHHHHHHHHHHHHhCCCCCCCCEEEEecCCchhhhh
Q psy2050 31 LCGILADEMGLGKTIQVISFLAYLHEAGLSRPKSPHLIIVPSSTLCKYK 79 (131)
Q Consensus 31 ~g~ilad~mGlGKT~~~ia~l~~~~~~~~~~~~~~~LIv~P~sl~~~W~ 79 (131)
+|.+|-...|.|||+.|-|+.... ..+++.|....++..|.
T Consensus 216 rGvLLyGPPGTGKTllAkAiA~e~--------~~~f~~v~~s~l~~~~v 256 (434)
T 4b4t_M 216 KGALMYGPPGTGKTLLARACAAQT--------NATFLKLAAPQLVQMYI 256 (434)
T ss_dssp CEEEEESCTTSSHHHHHHHHHHHH--------TCEEEEEEGGGGCSSCS
T ss_pred CeeEEECcCCCCHHHHHHHHHHHh--------CCCEEEEehhhhhhccc
Confidence 356779999999999988877655 57788888888877773
No 100
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=82.65 E-value=1.4 Score=35.10 Aligned_cols=41 Identities=22% Similarity=0.193 Sum_probs=31.1
Q ss_pred cCeeeeCCCCCCHHHHHHHHHHHHHHhCCCCCCCCEEEEecCCchhhhh
Q psy2050 31 LCGILADEMGLGKTIQVISFLAYLHEAGLSRPKSPHLIIVPSSTLCKYK 79 (131)
Q Consensus 31 ~g~ilad~mGlGKT~~~ia~l~~~~~~~~~~~~~~~LIv~P~sl~~~W~ 79 (131)
+|-+|....|.|||+.|-|+.... ..+++.|....++..|.
T Consensus 216 rGvLL~GPPGtGKTllAkAiA~e~--------~~~~~~v~~s~l~sk~~ 256 (437)
T 4b4t_L 216 KGVLLYGPPGTGKTLLAKAVAATI--------GANFIFSPASGIVDKYI 256 (437)
T ss_dssp CEEEEESCTTSSHHHHHHHHHHHH--------TCEEEEEEGGGTCCSSS
T ss_pred CeEEEECCCCCcHHHHHHHHHHHh--------CCCEEEEehhhhccccc
Confidence 466779999999999999877655 46677777777766554
No 101
>1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A*
Probab=81.87 E-value=2.5 Score=29.98 Aligned_cols=34 Identities=18% Similarity=0.217 Sum_probs=24.4
Q ss_pred eeeCCCCCCHHHHHHHHHHHHHHhCCCCCCCCEEEEecC
Q psy2050 34 ILADEMGLGKTIQVISFLAYLHEAGLSRPKSPHLIIVPS 72 (131)
Q Consensus 34 ilad~mGlGKT~~~ia~l~~~~~~~~~~~~~~~LIv~P~ 72 (131)
++...||+|||-..+-.+...... ..+++++-|.
T Consensus 24 fiyG~MgsGKTt~Ll~~i~n~~~~-----~~kvl~~kp~ 57 (195)
T 1w4r_A 24 VILGPMFSGKSTELMRRVRRFQIA-----QYKCLVIKYA 57 (195)
T ss_dssp EEEECTTSCHHHHHHHHHHHHHHT-----TCCEEEEEET
T ss_pred EEECCCCCcHHHHHHHHHHHHHHc-----CCeEEEEccc
Confidence 458899999997777665544433 3778888875
No 102
>3e2i_A Thymidine kinase; Zn-binding, ATP-binding, DNA synthesis, nucleotide-B transferase; HET: MSE; 2.01A {Staphylococcus aureus}
Probab=79.70 E-value=3.2 Score=30.00 Aligned_cols=34 Identities=24% Similarity=0.205 Sum_probs=24.3
Q ss_pred eeeCCCCCCHHHHHHHHHHHHHHhCCCCCCCCEEEEecC
Q psy2050 34 ILADEMGLGKTIQVISFLAYLHEAGLSRPKSPHLIIVPS 72 (131)
Q Consensus 34 ilad~mGlGKT~~~ia~l~~~~~~~~~~~~~~~LIv~P~ 72 (131)
++..+||.|||-+.+-.+...... ..+++|+-|.
T Consensus 32 vitG~M~sGKTT~Llr~~~r~~~~-----g~kvli~kp~ 65 (219)
T 3e2i_A 32 CITGSMFSGKSEELIRRLRRGIYA-----KQKVVVFKPA 65 (219)
T ss_dssp EEEECTTSCHHHHHHHHHHHHHHT-----TCCEEEEEEC
T ss_pred EEECCCCCCHHHHHHHHHHHHHHc-----CCceEEEEec
Confidence 557889999998777766444433 3668888874
No 103
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=79.65 E-value=1.9 Score=34.08 Aligned_cols=40 Identities=25% Similarity=0.223 Sum_probs=30.9
Q ss_pred cCeeeeCCCCCCHHHHHHHHHHHHHHhCCCCCCCCEEEEecCCchhhh
Q psy2050 31 LCGILADEMGLGKTIQVISFLAYLHEAGLSRPKSPHLIIVPSSTLCKY 78 (131)
Q Consensus 31 ~g~ilad~mGlGKT~~~ia~l~~~~~~~~~~~~~~~LIv~P~sl~~~W 78 (131)
+|-+|....|.|||..|-|+...+ ..+++.|....++..|
T Consensus 207 rGiLL~GPPGtGKT~lakAiA~~~--------~~~~~~v~~~~l~~~~ 246 (428)
T 4b4t_K 207 RGVLLYGPPGTGKTMLVKAVANST--------KAAFIRVNGSEFVHKY 246 (428)
T ss_dssp CEEEEESCTTTTHHHHHHHHHHHH--------TCEEEEEEGGGTCCSS
T ss_pred ceEEEECCCCCCHHHHHHHHHHHh--------CCCeEEEecchhhccc
Confidence 356779999999999998877655 4677777777777666
No 104
>2o0j_A Terminase, DNA packaging protein GP17; nucleotide-binding fold, hydrolase; HET: DNA ADP; 1.80A {Enterobacteria phage T4} PDB: 2o0h_A* 2o0k_A*
Probab=79.09 E-value=5.8 Score=30.87 Aligned_cols=59 Identities=22% Similarity=0.151 Sum_probs=40.0
Q ss_pred CCCCcchHHHHHHHHHHHHhhcccCeeeeCCCCCCHHHHHHHHHHHHHHhCCCCCCCCEEEEecCC
Q psy2050 8 RNLKLAGYQLVGLNWLAVMHNQQLCGILADEMGLGKTIQVISFLAYLHEAGLSRPKSPHLIIVPSS 73 (131)
Q Consensus 8 ~~~~L~~~Q~~~v~~l~~~~~~~~g~ilad~mGlGKT~~~ia~l~~~~~~~~~~~~~~~LIv~P~s 73 (131)
.++.|.|||+.-+..+. ..+-.++.-.=+.|||..+.+.+........ ...+++++|..
T Consensus 160 ~p~~L~p~Qk~il~~l~----~~R~~vi~~sRq~GKT~l~a~~~l~~a~~~~---g~~v~~vA~t~ 218 (385)
T 2o0j_A 160 IKVQLRDYQRDMLKIMS----SKRMTVCNLSRQLGKTTVVAIFLAHFVCFNK---DKAVGILAHKG 218 (385)
T ss_dssp EECCCCHHHHHHHHHHH----HSSEEEEEECSSSCHHHHHHHHHHHHHHSSS---SCEEEEEESSH
T ss_pred CCCCCCHHHHHHHHhhc----cCcEEEEEEcCcCChhHHHHHHHHHHHHhCC---CCeEEEEeCCH
Confidence 35689999999887653 2334666777899999987776554333321 35678888864
No 105
>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14
Probab=78.87 E-value=3.5 Score=30.07 Aligned_cols=34 Identities=18% Similarity=0.217 Sum_probs=25.2
Q ss_pred eeeCCCCCCHHHHHHHHHHHHHHhCCCCCCCCEEEEecC
Q psy2050 34 ILADEMGLGKTIQVISFLAYLHEAGLSRPKSPHLIIVPS 72 (131)
Q Consensus 34 ilad~mGlGKT~~~ia~l~~~~~~~~~~~~~~~LIv~P~ 72 (131)
+....||.|||-.++-.+...... ..+++|+-|.
T Consensus 23 v~~G~MgsGKTT~lL~~~~r~~~~-----g~kvli~kp~ 56 (234)
T 2orv_A 23 VILGPMFSGKSTELMRRVRRFQIA-----QYKCLVIKYA 56 (234)
T ss_dssp EEECCTTSCHHHHHHHHHHHHHTT-----TCCEEEEEET
T ss_pred EEECCCCCcHHHHHHHHHHHHHHC-----CCeEEEEeec
Confidence 558899999999888876655433 3678888774
No 106
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=78.31 E-value=2.2 Score=34.01 Aligned_cols=41 Identities=29% Similarity=0.234 Sum_probs=31.7
Q ss_pred cCeeeeCCCCCCHHHHHHHHHHHHHHhCCCCCCCCEEEEecCCchhhhh
Q psy2050 31 LCGILADEMGLGKTIQVISFLAYLHEAGLSRPKSPHLIIVPSSTLCKYK 79 (131)
Q Consensus 31 ~g~ilad~mGlGKT~~~ia~l~~~~~~~~~~~~~~~LIv~P~sl~~~W~ 79 (131)
+|-+|....|.|||+.|-|+.... ..+++.|....++..|.
T Consensus 217 rGvLLyGPPGTGKTlLAkAiA~e~--------~~~fi~v~~s~l~sk~v 257 (437)
T 4b4t_I 217 KGVILYGAPGTGKTLLAKAVANQT--------SATFLRIVGSELIQKYL 257 (437)
T ss_dssp SEEEEESSTTTTHHHHHHHHHHHH--------TCEEEEEESGGGCCSSS
T ss_pred CCCceECCCCchHHHHHHHHHHHh--------CCCEEEEEHHHhhhccC
Confidence 356779999999999998877655 46777777777776663
No 107
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=77.79 E-value=2.2 Score=34.31 Aligned_cols=40 Identities=20% Similarity=0.198 Sum_probs=31.1
Q ss_pred cCeeeeCCCCCCHHHHHHHHHHHHHHhCCCCCCCCEEEEecCCchhhh
Q psy2050 31 LCGILADEMGLGKTIQVISFLAYLHEAGLSRPKSPHLIIVPSSTLCKY 78 (131)
Q Consensus 31 ~g~ilad~mGlGKT~~~ia~l~~~~~~~~~~~~~~~LIv~P~sl~~~W 78 (131)
+|-+|....|.|||+.|-|+.... ..+++.|....++..|
T Consensus 244 rGILLyGPPGTGKTlLAkAiA~e~--------~~~fi~vs~s~L~sk~ 283 (467)
T 4b4t_H 244 KGILLYGPPGTGKTLCARAVANRT--------DATFIRVIGSELVQKY 283 (467)
T ss_dssp SEEEECSCTTSSHHHHHHHHHHHH--------TCEEEEEEGGGGCCCS
T ss_pred CceEeeCCCCCcHHHHHHHHHhcc--------CCCeEEEEhHHhhccc
Confidence 356779999999999988876655 4677777777777766
No 108
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=76.41 E-value=5.1 Score=28.71 Aligned_cols=40 Identities=20% Similarity=0.187 Sum_probs=25.8
Q ss_pred cCeeeeCCCCCCHHHHHHHHHHHHHHhCCCCCCCCEEEEecCCchhhh
Q psy2050 31 LCGILADEMGLGKTIQVISFLAYLHEAGLSRPKSPHLIIVPSSTLCKY 78 (131)
Q Consensus 31 ~g~ilad~mGlGKT~~~ia~l~~~~~~~~~~~~~~~LIv~P~sl~~~W 78 (131)
.+-+|..+.|.|||..+-++...+ ..+++.+....+...|
T Consensus 52 ~~~ll~G~~GtGKT~la~~la~~~--------~~~~~~v~~~~~~~~~ 91 (285)
T 3h4m_A 52 KGILLYGPPGTGKTLLAKAVATET--------NATFIRVVGSELVKKF 91 (285)
T ss_dssp SEEEEESSSSSSHHHHHHHHHHHT--------TCEEEEEEGGGGCCCS
T ss_pred CeEEEECCCCCcHHHHHHHHHHHh--------CCCEEEEehHHHHHhc
Confidence 356779999999999887765432 3555555554444333
No 109
>1pjr_A PCRA; DNA repair, DNA replication, SOS response, helicase, ATP- binding, DNA-binding; 2.50A {Geobacillus stearothermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1qhg_A* 3pjr_A* 2pjr_A* 1qhh_B* 1qhh_D* 1qhh_A* 1qhh_C* 2pjr_B*
Probab=75.83 E-value=5.9 Score=33.03 Aligned_cols=56 Identities=20% Similarity=0.081 Sum_probs=39.9
Q ss_pred CcchHHHHHHHHHHHHhhcccCeeeeCCCCCCHHHHHHHHHHHHHHhCCCCCCCCEEEEecCC
Q psy2050 11 KLAGYQLVGLNWLAVMHNQQLCGILADEMGLGKTIQVISFLAYLHEAGLSRPKSPHLIIVPSS 73 (131)
Q Consensus 11 ~L~~~Q~~~v~~l~~~~~~~~g~ilad~mGlGKT~~~ia~l~~~~~~~~~~~~~~~LIv~P~s 73 (131)
.|-+-|+++|.. ..+..++-..-|.|||...+.-+..+...... ++...|+|+...
T Consensus 11 ~Ln~~Q~~av~~------~~g~~lV~AgAGSGKT~vL~~ri~~ll~~~~~-~p~~IL~vTFTn 66 (724)
T 1pjr_A 11 HLNKEQQEAVRT------TEGPLLIMAGAGSGKTRVLTHRIAYLMAEKHV-APWNILAITFTN 66 (724)
T ss_dssp TSCHHHHHHHHC------CSSCEEEEECTTSCHHHHHHHHHHHHHHTTCC-CGGGEEEEESSH
T ss_pred hCCHHHHHHHhC------CCCCEEEEEcCCCCHHHHHHHHHHHHHHhcCC-CHHHeEEEeccH
Confidence 578899999843 22344556678999999998888777764322 157789998854
No 110
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=75.03 E-value=7.9 Score=26.81 Aligned_cols=44 Identities=18% Similarity=0.180 Sum_probs=30.0
Q ss_pred eeeeCCCCCCHHHHHHHHHHHHHHhCCCCCCCCEEEEecCCchhhhhh
Q psy2050 33 GILADEMGLGKTIQVISFLAYLHEAGLSRPKSPHLIIVPSSTLCKYKV 80 (131)
Q Consensus 33 ~ilad~mGlGKT~~~ia~l~~~~~~~~~~~~~~~LIv~P~sl~~~W~~ 80 (131)
.+++.+.|.|||.-++.++....... ..+++++.-..-..+-.+
T Consensus 33 ~~i~G~pG~GKT~l~l~~~~~~~~~~----~~~v~~~s~E~~~~~~~~ 76 (251)
T 2zts_A 33 VLLTGGTGTGKTTFAAQFIYKGAEEY----GEPGVFVTLEERARDLRR 76 (251)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHHHHH----CCCEEEEESSSCHHHHHH
T ss_pred EEEEeCCCCCHHHHHHHHHHHHHHhc----CCCceeecccCCHHHHHH
Confidence 47799999999999988776543332 367888776544444333
No 111
>3hjh_A Transcription-repair-coupling factor; MFD, mutation frequency decline, ATP-binding, DNA DAMA repair, DNA-binding, helicase, hydrolase; 1.95A {Escherichia coli} PDB: 2b2n_A* 4dfc_A
Probab=74.97 E-value=3.5 Score=33.06 Aligned_cols=52 Identities=13% Similarity=0.142 Sum_probs=38.6
Q ss_pred eeeeCCCCCCHHHHHHHHHHHHHHhCCCCCCCCEEEEecCC-chhhhhh-hhcccCCCceeec
Q psy2050 33 GILADEMGLGKTIQVISFLAYLHEAGLSRPKSPHLIIVPSS-TLCKYKV-PSRWRTSNCDKTS 93 (131)
Q Consensus 33 ~ilad~mGlGKT~~~ia~l~~~~~~~~~~~~~~~LIv~P~s-l~~~W~~-~~~~~p~~~v~~~ 93 (131)
-.|..-.|-|||+.+.+++... .+|+|||||.. ...+|.+ ++.|.|+. |..+
T Consensus 17 ~~l~g~~gs~ka~~~a~l~~~~--------~~p~lvv~~~~~~A~~l~~~l~~~~~~~-v~~f 70 (483)
T 3hjh_A 17 RLLGELTGAACATLVAEIAERH--------AGPVVLIAPDMQNALRLHDEISQFTDQM-VMNL 70 (483)
T ss_dssp EEEECCCTTHHHHHHHHHHHHS--------SSCEEEEESSHHHHHHHHHHHHHTCSSC-EEEC
T ss_pred EEEeCCCchHHHHHHHHHHHHh--------CCCEEEEeCCHHHHHHHHHHHHhhCCCc-EEEE
Confidence 3566678999999776655322 48999999964 5778999 99998875 5543
No 112
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=74.85 E-value=10 Score=28.11 Aligned_cols=25 Identities=24% Similarity=0.280 Sum_probs=20.7
Q ss_pred cCeeeeCCCCCCHHHHHHHHHHHHH
Q psy2050 31 LCGILADEMGLGKTIQVISFLAYLH 55 (131)
Q Consensus 31 ~g~ilad~mGlGKT~~~ia~l~~~~ 55 (131)
.+-+|..+.|.|||..+.++.....
T Consensus 153 ~~lll~G~~GtGKT~La~aia~~~~ 177 (308)
T 2qgz_A 153 KGLYLYGDMGIGKSYLLAAMAHELS 177 (308)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHH
Confidence 4567899999999999988776665
No 113
>3jux_A Protein translocase subunit SECA; protein translocation, ATPase, conformational change, peptide binding, ATP-binding, cell inner membrane; HET: ADP; 3.10A {Thermotoga maritima} PDB: 3din_A*
Probab=74.75 E-value=5.1 Score=34.35 Aligned_cols=64 Identities=11% Similarity=0.009 Sum_probs=38.4
Q ss_pred CcchHHHHHHHHHHHHhhcccCeeeeCCCCCCHHHHHHHHHHHHHHhCCCCCCCCEEEEecCCc-hhh---hhh-hhccc
Q psy2050 11 KLAGYQLVGLNWLAVMHNQQLCGILADEMGLGKTIQVISFLAYLHEAGLSRPKSPHLIIVPSST-LCK---YKV-PSRWR 85 (131)
Q Consensus 11 ~L~~~Q~~~v~~l~~~~~~~~g~ilad~mGlGKT~~~ia~l~~~~~~~~~~~~~~~LIv~P~sl-~~~---W~~-~~~~~ 85 (131)
..++-|.-|. |. -+.|.|.--..|-|||+.+...+....-. ...+.||+|..- ..+ |-. +-+|.
T Consensus 75 r~~dvQligg--~~----L~~G~iaEM~TGEGKTLva~lp~~lnAL~-----G~~vhVvT~ndyLA~rdae~m~~l~~~L 143 (822)
T 3jux_A 75 RPFDVQVMGG--IA----LHEGKVAEMKTGEGKTLAATMPIYLNALI-----GKGVHLVTVNDYLARRDALWMGPVYLFL 143 (822)
T ss_dssp CCCHHHHHHH--HH----HHTTCEEECCTTSCHHHHTHHHHHHHHTT-----SSCEEEEESSHHHHHHHHHHHHHHHHHT
T ss_pred CCcHHHHHHH--HH----HhCCChhhccCCCCccHHHHHHHHHHHhc-----CCceEEEeccHHHHHhHHHHHHHHHHHh
Confidence 3445555544 33 23566777789999999765443322222 366889999754 443 766 55554
No 114
>1byi_A Dethiobiotin synthase; biotin synthesis, cyclo-ligase, ligase; 0.97A {Escherichia coli} SCOP: c.37.1.10 PDB: 1bs1_A* 1a82_A 1dad_A* 1dae_A* 1daf_A* 1dag_A* 1dah_A* 1dai_A* 1dak_A* 1dam_A* 1dbs_A 1dts_A
Probab=74.50 E-value=5.9 Score=27.28 Aligned_cols=33 Identities=21% Similarity=0.284 Sum_probs=25.6
Q ss_pred eeeCCCCCCHHHHHHHHHHHHHHhCCCCCCCCEEEEec
Q psy2050 34 ILADEMGLGKTIQVISFLAYLHEAGLSRPKSPHLIIVP 71 (131)
Q Consensus 34 ilad~mGlGKT~~~ia~l~~~~~~~~~~~~~~~LIv~P 71 (131)
+.+-.-|-|||..++.+...+...+ .+++++=|
T Consensus 6 v~s~kgGvGKTt~a~nLa~~la~~G-----~rVll~dp 38 (224)
T 1byi_A 6 VTGTDTEVGKTVASCALLQAAKAAG-----YRTAGYKP 38 (224)
T ss_dssp EEESSTTSCHHHHHHHHHHHHHHTT-----CCEEEECS
T ss_pred EEECCCCCCHHHHHHHHHHHHHHCC-----CCEEEEcc
Confidence 4456679999999999988887764 56777655
No 115
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=73.13 E-value=4.3 Score=27.47 Aligned_cols=31 Identities=26% Similarity=0.306 Sum_probs=22.7
Q ss_pred eCCCCCCHHHHHHHHHHHHHHhCCCCCCCCEEEEec
Q psy2050 36 ADEMGLGKTIQVISFLAYLHEAGLSRPKSPHLIIVP 71 (131)
Q Consensus 36 ad~mGlGKT~~~ia~l~~~~~~~~~~~~~~~LIv~P 71 (131)
+---|.|||..+..+...+...+ .++++|--
T Consensus 8 s~kgG~GKTt~a~~la~~la~~g-----~~vlliD~ 38 (206)
T 4dzz_A 8 NPKGGSGKTTAVINIATALSRSG-----YNIAVVDT 38 (206)
T ss_dssp CSSTTSSHHHHHHHHHHHHHHTT-----CCEEEEEC
T ss_pred eCCCCccHHHHHHHHHHHHHHCC-----CeEEEEEC
Confidence 34558999999999888777653 56776653
No 116
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=72.29 E-value=18 Score=25.26 Aligned_cols=35 Identities=20% Similarity=0.248 Sum_probs=24.0
Q ss_pred CeeeeCCCCCCHHHHHHHHHHHHHHhCCCCCCCCEEEEecCCc
Q psy2050 32 CGILADEMGLGKTIQVISFLAYLHEAGLSRPKSPHLIIVPSST 74 (131)
Q Consensus 32 g~ilad~mGlGKT~~~ia~l~~~~~~~~~~~~~~~LIv~P~sl 74 (131)
+-+|..+.|.|||..+-++.... ..+++.+-...+
T Consensus 41 ~vll~G~~GtGKT~la~~la~~~--------~~~~~~~~~~~~ 75 (262)
T 2qz4_A 41 GALLLGPPGCGKTLLAKAVATEA--------QVPFLAMAGAEF 75 (262)
T ss_dssp EEEEESCTTSSHHHHHHHHHHHH--------TCCEEEEETTTT
T ss_pred eEEEECCCCCCHHHHHHHHHHHh--------CCCEEEechHHH
Confidence 45679999999999888765543 355655554444
No 117
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=71.36 E-value=9.1 Score=28.43 Aligned_cols=41 Identities=17% Similarity=0.086 Sum_probs=28.2
Q ss_pred hHHHHHHHHHHHHhhccc----CeeeeCCCCCCHHHHHHHHHHHH
Q psy2050 14 GYQLVGLNWLAVMHNQQL----CGILADEMGLGKTIQVISFLAYL 54 (131)
Q Consensus 14 ~~Q~~~v~~l~~~~~~~~----g~ilad~mGlGKT~~~ia~l~~~ 54 (131)
+.+.+++..+......+. +-+|..+.|.|||..+-++...+
T Consensus 50 ~~~~~~l~~l~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l 94 (368)
T 3uk6_A 50 LAARRAAGVVLEMIREGKIAGRAVLIAGQPGTGKTAIAMGMAQAL 94 (368)
T ss_dssp HHHHHHHHHHHHHHHTTCCTTCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCCCCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 445555655555554443 35779999999999988876655
No 118
>3of5_A Dethiobiotin synthetase; structural genomics, center for structural genomics of infec diseases, csgid, ligase; 1.52A {Francisella tularensis subsp}
Probab=71.06 E-value=4.9 Score=28.66 Aligned_cols=26 Identities=15% Similarity=0.317 Sum_probs=22.3
Q ss_pred eeeCCCCCCHHHHHHHHHHHHHHhCC
Q psy2050 34 ILADEMGLGKTIQVISFLAYLHEAGL 59 (131)
Q Consensus 34 ilad~mGlGKT~~~ia~l~~~~~~~~ 59 (131)
|-+.+.|.|||..+.+++..+.+.+.
T Consensus 9 Itgt~t~vGKT~vt~~L~~~l~~~G~ 34 (228)
T 3of5_A 9 IIGTDTEVGKTYISTKLIEVCEHQNI 34 (228)
T ss_dssp EEESSSSSCHHHHHHHHHHHHHHTTC
T ss_pred EEeCCCCCCHHHHHHHHHHHHHHCCC
Confidence 45889999999999999988887764
No 119
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=70.67 E-value=11 Score=25.08 Aligned_cols=42 Identities=19% Similarity=0.078 Sum_probs=29.4
Q ss_pred hHHHHHHHHHHHHhh-----cccCeeeeCCCCCCHHHHHHHHHHHHH
Q psy2050 14 GYQLVGLNWLAVMHN-----QQLCGILADEMGLGKTIQVISFLAYLH 55 (131)
Q Consensus 14 ~~Q~~~v~~l~~~~~-----~~~g~ilad~mGlGKT~~~ia~l~~~~ 55 (131)
+.|++++..+..... .+.+-+|..+.|.|||..+-++...+.
T Consensus 17 ~~~~~~~~~~~~~~~~~~~~~g~~~~l~G~~G~GKTtL~~~i~~~~~ 63 (180)
T 3ec2_A 17 VSQNRALLTIRVFVHNFNPEEGKGLTFVGSPGVGKTHLAVATLKAIY 63 (180)
T ss_dssp HHHHHHHHHHHHHHHSCCGGGCCEEEECCSSSSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhccccCCCEEEEECCCCCCHHHHHHHHHHHHH
Confidence 468888776654432 233456788999999998887766554
No 120
>3cpe_A Terminase, DNA packaging protein GP17; large terminase, alternative initiation, ATP-binding, DNA- binding, hydrolase, nuclease; HET: DNA; 2.80A {Bacteriophage T4} PDB: 3ezk_A*
Probab=70.00 E-value=14 Score=30.01 Aligned_cols=59 Identities=22% Similarity=0.151 Sum_probs=39.3
Q ss_pred CCCCcchHHHHHHHHHHHHhhcccCeeeeCCCCCCHHHHHHHHHHHHHHhCCCCCCCCEEEEecCC
Q psy2050 8 RNLKLAGYQLVGLNWLAVMHNQQLCGILADEMGLGKTIQVISFLAYLHEAGLSRPKSPHLIIVPSS 73 (131)
Q Consensus 8 ~~~~L~~~Q~~~v~~l~~~~~~~~g~ilad~mGlGKT~~~ia~l~~~~~~~~~~~~~~~LIv~P~s 73 (131)
.++.|.+||+.-+..+. ..+-.++.-.=|.|||..+.+.+........ ...++++.|..
T Consensus 160 ~~~~l~p~Q~~i~~~l~----~~r~~~i~~~Rq~GKS~~~a~~~l~~~~~~~---~~~i~~va~t~ 218 (592)
T 3cpe_A 160 IKVQLRDYQRDMLKIMS----SKRMTVCNLSRQLGKTTVVAIFLAHFVCFNK---DKAVGILAHKG 218 (592)
T ss_dssp BBCCCCHHHHHHHHHHH----HCSEEEEEECSSSCHHHHHHHHHHHHHHTSS---SCEEEEEESSH
T ss_pred ccCcCCHHHHHHHHhhc----cccEEEEEEcCccChHHHHHHHHHHHHHhCC---CCeEEEEECCH
Confidence 45789999999876552 2344666667899999977665544433321 24688888854
No 121
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=69.73 E-value=13 Score=26.66 Aligned_cols=24 Identities=17% Similarity=0.116 Sum_probs=18.9
Q ss_pred cCeeeeCCCCCCHHHHHHHHHHHH
Q psy2050 31 LCGILADEMGLGKTIQVISFLAYL 54 (131)
Q Consensus 31 ~g~ilad~mGlGKT~~~ia~l~~~ 54 (131)
.+-++..+.|.|||..+-++...+
T Consensus 51 ~~vll~G~~GtGKT~la~~la~~l 74 (310)
T 1ofh_A 51 KNILMIGPTGVGKTEIARRLAKLA 74 (310)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHh
Confidence 356779999999999888776544
No 122
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=69.53 E-value=19 Score=25.34 Aligned_cols=22 Identities=18% Similarity=0.200 Sum_probs=17.4
Q ss_pred CeeeeCCCCCCHHHHHHHHHHH
Q psy2050 32 CGILADEMGLGKTIQVISFLAY 53 (131)
Q Consensus 32 g~ilad~mGlGKT~~~ia~l~~ 53 (131)
+.+|..+.|.|||..+-++...
T Consensus 47 ~vll~G~~GtGKT~la~~la~~ 68 (257)
T 1lv7_A 47 GVLMVGPPGTGKTLLAKAIAGE 68 (257)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred eEEEECcCCCCHHHHHHHHHHH
Confidence 5577999999999887776543
No 123
>3kjh_A CO dehydrogenase/acetyl-COA synthase complex, accessory protein COOC; Zn-bound dimer, nickel binding protein, ATPase; 1.90A {Carboxydothermus hydrogenoformans} PDB: 3kjg_A* 3kje_A 3kji_A*
Probab=69.52 E-value=3 Score=29.04 Aligned_cols=29 Identities=14% Similarity=0.172 Sum_probs=21.6
Q ss_pred CCCCCCHHHHHHHHHHHHHHhCCCCCCCCEEEEe
Q psy2050 37 DEMGLGKTIQVISFLAYLHEAGLSRPKSPHLIIV 70 (131)
Q Consensus 37 d~mGlGKT~~~ia~l~~~~~~~~~~~~~~~LIv~ 70 (131)
.--|.|||..+..+...+...+ .++|+|=
T Consensus 7 ~kGGvGKTt~a~~LA~~la~~g-----~~VlliD 35 (254)
T 3kjh_A 7 GKGGVGKTTVAAGLIKIMASDY-----DKIYAVD 35 (254)
T ss_dssp CSSSHHHHHHHHHHHHHHTTTC-----SCEEEEE
T ss_pred cCCCCCHHHHHHHHHHHHHHCC-----CeEEEEe
Confidence 3457899999999888776553 5677663
No 124
>1cp2_A CP2, nitrogenase iron protein; oxidoreductase; 1.93A {Clostridium pasteurianum} SCOP: c.37.1.10
Probab=69.42 E-value=4.9 Score=28.59 Aligned_cols=27 Identities=22% Similarity=0.464 Sum_probs=20.3
Q ss_pred CCCCCHHHHHHHHHHHHHHhCCCCCCCCEEEE
Q psy2050 38 EMGLGKTIQVISFLAYLHEAGLSRPKSPHLII 69 (131)
Q Consensus 38 ~mGlGKT~~~ia~l~~~~~~~~~~~~~~~LIv 69 (131)
-=|-|||..++.+...+...+ .++|+|
T Consensus 9 KGGvGKTT~a~nLA~~la~~G-----~~Vlli 35 (269)
T 1cp2_A 9 KGGIGKSTTTQNLTSGLHAMG-----KTIMVV 35 (269)
T ss_dssp CTTSSHHHHHHHHHHHHHTTT-----CCEEEE
T ss_pred CCCCcHHHHHHHHHHHHHHCC-----CcEEEE
Confidence 457999999999888777543 566665
No 125
>3qxc_A Dethiobiotin synthetase; DTBS, structural genomics, ATP BIND biology, protein structure initiative, midwest center for S genomics, MCSG; HET: ATP; 1.34A {Helicobacter pylori} PDB: 3mle_A* 3qxh_A* 3qxj_A* 3qxs_A* 3qxx_A* 3qy0_A* 2qmo_A
Probab=69.42 E-value=5.5 Score=28.85 Aligned_cols=26 Identities=27% Similarity=0.331 Sum_probs=22.4
Q ss_pred eeeCCCCCCHHHHHHHHHHHHHHhCC
Q psy2050 34 ILADEMGLGKTIQVISFLAYLHEAGL 59 (131)
Q Consensus 34 ilad~mGlGKT~~~ia~l~~~~~~~~ 59 (131)
|-+.+.|.|||..+.+++..+.+.+.
T Consensus 26 ItgT~t~vGKT~vs~gL~~~L~~~G~ 51 (242)
T 3qxc_A 26 ISATNTNAGKTTCARLLAQYCNACGV 51 (242)
T ss_dssp EEESSTTSSHHHHHHHHHHHHHHTTC
T ss_pred EEeCCCCCcHHHHHHHHHHHHHhCCC
Confidence 45889999999999999988887764
No 126
>2oze_A ORF delta'; para, walker type atpases, DNA segregation, PSM19035, plasmid, DNA binding protein; HET: AGS EPE; 1.83A {Streptococcus pyogenes}
Probab=69.22 E-value=5.4 Score=28.93 Aligned_cols=28 Identities=21% Similarity=0.182 Sum_probs=21.6
Q ss_pred CCCCCCHHHHHHHHHHHHHHhCCCCCCCCEEEE
Q psy2050 37 DEMGLGKTIQVISFLAYLHEAGLSRPKSPHLII 69 (131)
Q Consensus 37 d~mGlGKT~~~ia~l~~~~~~~~~~~~~~~LIv 69 (131)
---|.|||..+..+...+...+ .++|+|
T Consensus 44 ~KGGvGKTT~a~nLA~~la~~G-----~rVlli 71 (298)
T 2oze_A 44 FKGGVGKSKLSTMFAYLTDKLN-----LKVLMI 71 (298)
T ss_dssp SSSSSSHHHHHHHHHHHHHHTT-----CCEEEE
T ss_pred CCCCchHHHHHHHHHHHHHhCC-----CeEEEE
Confidence 4678999999999887777643 567765
No 127
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=69.18 E-value=4.1 Score=30.10 Aligned_cols=35 Identities=23% Similarity=0.121 Sum_probs=23.5
Q ss_pred HHHHHHHHHhhcccCeeeeCCCCCCHHHHHHHHHH
Q psy2050 18 VGLNWLAVMHNQQLCGILADEMGLGKTIQVISFLA 52 (131)
Q Consensus 18 ~~v~~l~~~~~~~~g~ilad~mGlGKT~~~ia~l~ 52 (131)
+.+..+......+.+.+|..+.|.|||..+-++..
T Consensus 34 ~~~~~l~~~l~~~~~vll~G~pGtGKT~la~~la~ 68 (331)
T 2r44_A 34 YMINRLLIGICTGGHILLEGVPGLAKTLSVNTLAK 68 (331)
T ss_dssp HHHHHHHHHHHHTCCEEEESCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCeEEEECCCCCcHHHHHHHHHH
Confidence 33333333333556778899999999998877644
No 128
>3fwy_A Light-independent protochlorophyllide reductase I ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2}
Probab=68.98 E-value=5.3 Score=29.98 Aligned_cols=27 Identities=26% Similarity=0.240 Sum_probs=20.9
Q ss_pred CCCCHHHHHHHHHHHHHHhCCCCCCCCEEEEe
Q psy2050 39 MGLGKTIQVISFLAYLHEAGLSRPKSPHLIIV 70 (131)
Q Consensus 39 mGlGKT~~~ia~l~~~~~~~~~~~~~~~LIv~ 70 (131)
=|.|||-+++-+.+.+...+ .++|+|=
T Consensus 57 GGVGKTTtavNLA~aLA~~G-----kkVllID 83 (314)
T 3fwy_A 57 GGIGKSTTSSNLSAAFSILG-----KRVLQIG 83 (314)
T ss_dssp TTSSHHHHHHHHHHHHHHTT-----CCEEEEE
T ss_pred CccCHHHHHHHHHHHHHHCC-----CeEEEEe
Confidence 36899999999988888875 5566653
No 129
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=68.75 E-value=22 Score=28.12 Aligned_cols=52 Identities=15% Similarity=0.166 Sum_probs=31.5
Q ss_pred eeeCCCCCCHHHHHHHHHHHHHHhCCCCCCCCEEEEe-cCCchhhhhhhhcccCCCce
Q psy2050 34 ILADEMGLGKTIQVISFLAYLHEAGLSRPKSPHLIIV-PSSTLCKYKVPSRWRTSNCD 90 (131)
Q Consensus 34 ilad~mGlGKT~~~ia~l~~~~~~~~~~~~~~~LIv~-P~sl~~~W~~~~~~~p~~~v 90 (131)
+++..-|.|||-.+..++..+...+ .++++|+ ...-..-+.+++.|.....+
T Consensus 104 livG~~G~GKTTt~~kLA~~l~~~G-----~kVllv~~D~~R~aa~eqL~~~~~~~gv 156 (443)
T 3dm5_A 104 LMVGIQGSGKTTTVAKLARYFQKRG-----YKVGVVCSDTWRPGAYHQLRQLLDRYHI 156 (443)
T ss_dssp EEECCTTSSHHHHHHHHHHHHHTTT-----CCEEEEECCCSSTHHHHHHHHHHGGGTC
T ss_pred EEECcCCCCHHHHHHHHHHHHHHCC-----CeEEEEeCCCcchhHHHHHHHHHHhcCC
Confidence 4466799999999998887776543 4555555 34333333335555544344
No 130
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=68.53 E-value=5.6 Score=29.08 Aligned_cols=29 Identities=24% Similarity=0.239 Sum_probs=22.2
Q ss_pred CCCCCCHHHHHHHHHHHHHHhCCCCCCCCEEEEe
Q psy2050 37 DEMGLGKTIQVISFLAYLHEAGLSRPKSPHLIIV 70 (131)
Q Consensus 37 d~mGlGKT~~~ia~l~~~~~~~~~~~~~~~LIv~ 70 (131)
.-=|.|||..++.+...+...+ .++|+|=
T Consensus 48 ~KGGvGKTT~a~nLA~~La~~G-----~~VlliD 76 (307)
T 3end_A 48 GKGGIGKSTTSSNLSAAFSILG-----KRVLQIG 76 (307)
T ss_dssp CSTTSSHHHHHHHHHHHHHHTT-----CCEEEEE
T ss_pred CCCCccHHHHHHHHHHHHHHCC-----CeEEEEe
Confidence 4677999999999888887654 5676663
No 131
>3zq6_A Putative arsenical pump-driving ATPase; tail-anchored, membrane protein; HET: ADP; 2.11A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=68.51 E-value=5.5 Score=29.74 Aligned_cols=33 Identities=21% Similarity=0.391 Sum_probs=25.2
Q ss_pred eeeCCCCCCHHHHHHHHHHHHHHhCCCCCCCCEEEEec
Q psy2050 34 ILADEMGLGKTIQVISFLAYLHEAGLSRPKSPHLIIVP 71 (131)
Q Consensus 34 ilad~mGlGKT~~~ia~l~~~~~~~~~~~~~~~LIv~P 71 (131)
+...--|-|||..+.++...+...+ .++|+|-.
T Consensus 18 v~sgKGGvGKTTvA~~LA~~lA~~G-----~rVLlvD~ 50 (324)
T 3zq6_A 18 FIGGKGGVGKTTISAATALWMARSG-----KKTLVIST 50 (324)
T ss_dssp EEEESTTSSHHHHHHHHHHHHHHTT-----CCEEEEEC
T ss_pred EEeCCCCchHHHHHHHHHHHHHHCC-----CcEEEEeC
Confidence 4466778999999999988877654 56777665
No 132
>1g3q_A MIND ATPase, cell division inhibitor; alpha-beta-alpha layered, protein-ADP complex, cell cycle, hydrolase; HET: ADP; 2.00A {Pyrococcus furiosus} SCOP: c.37.1.10 PDB: 1g3r_A* 1ion_A*
Probab=68.04 E-value=9 Score=26.52 Aligned_cols=33 Identities=24% Similarity=0.288 Sum_probs=24.9
Q ss_pred eeeCCCCCCHHHHHHHHHHHHHHhCCCCCCCCEEEEec
Q psy2050 34 ILADEMGLGKTIQVISFLAYLHEAGLSRPKSPHLIIVP 71 (131)
Q Consensus 34 ilad~mGlGKT~~~ia~l~~~~~~~~~~~~~~~LIv~P 71 (131)
+.+..-|-|||..++.+...+...+ .++|+|-.
T Consensus 7 v~s~kgGvGKTt~a~~LA~~la~~g-----~~VlliD~ 39 (237)
T 1g3q_A 7 IVSGKGGTGKTTVTANLSVALGDRG-----RKVLAVDG 39 (237)
T ss_dssp EECSSTTSSHHHHHHHHHHHHHHTT-----CCEEEEEC
T ss_pred EecCCCCCCHHHHHHHHHHHHHhcC-----CeEEEEeC
Confidence 4455668999999999988877653 57777765
No 133
>3fgn_A Dethiobiotin synthetase; biotin biosynthesis, BIOD, ATP-BIND ligase, magnesium, nucleotide-binding; 1.85A {Mycobacterium tuberculosis} PDB: 3fmf_A* 3fmi_A* 3fpa_A*
Probab=67.64 E-value=6.2 Score=28.73 Aligned_cols=26 Identities=23% Similarity=0.464 Sum_probs=22.2
Q ss_pred eeeCCCCCCHHHHHHHHHHHHHHhCC
Q psy2050 34 ILADEMGLGKTIQVISFLAYLHEAGL 59 (131)
Q Consensus 34 ilad~mGlGKT~~~ia~l~~~~~~~~ 59 (131)
|-+.+.|.|||..+++++..+.+.+.
T Consensus 31 Itgt~t~vGKT~vt~gL~~~l~~~G~ 56 (251)
T 3fgn_A 31 VTGTGTGVGKTVVCAALASAARQAGI 56 (251)
T ss_dssp EEESSTTSCHHHHHHHHHHHHHHTTC
T ss_pred EEeCCCCCcHHHHHHHHHHHHHHCCC
Confidence 44889999999999999988887764
No 134
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=67.55 E-value=10 Score=24.42 Aligned_cols=22 Identities=14% Similarity=0.135 Sum_probs=17.5
Q ss_pred cccCeeeeCCCCCCHHHHHHHH
Q psy2050 29 QQLCGILADEMGLGKTIQVISF 50 (131)
Q Consensus 29 ~~~g~ilad~mGlGKT~~~ia~ 50 (131)
....-++..|.|.|||..|-++
T Consensus 23 ~~~~vll~G~~GtGKt~lA~~i 44 (145)
T 3n70_A 23 TDIAVWLYGAPGTGRMTGARYL 44 (145)
T ss_dssp CCSCEEEESSTTSSHHHHHHHH
T ss_pred CCCCEEEECCCCCCHHHHHHHH
Confidence 4446788999999999977764
No 135
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=67.22 E-value=9.1 Score=29.92 Aligned_cols=42 Identities=26% Similarity=0.241 Sum_probs=28.5
Q ss_pred CeeeeCCCCCCHHHHHHHHHHHHHHhCCCCCCCCEEEEecCCchhhhh
Q psy2050 32 CGILADEMGLGKTIQVISFLAYLHEAGLSRPKSPHLIIVPSSTLCKYK 79 (131)
Q Consensus 32 g~ilad~mGlGKT~~~ia~l~~~~~~~~~~~~~~~LIv~P~sl~~~W~ 79 (131)
+-+|....|.|||..|-++...+.. ..+++-+....+...|.
T Consensus 65 ~iLl~GppGtGKT~la~ala~~l~~------~~~~~~~~~~~~~~~~~ 106 (456)
T 2c9o_A 65 AVLLAGPPGTGKTALALAIAQELGS------KVPFCPMVGSEVYSTEI 106 (456)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHCT------TSCEEEEEGGGGCCSSS
T ss_pred eEEEECCCcCCHHHHHHHHHHHhCC------CceEEEEeHHHHHHHhh
Confidence 5677999999999999887665411 25666666555554443
No 136
>2afh_E Nitrogenase iron protein 1; nitrogen fixation, iron-sulfur, metal-binding, molybdenum, oxidoreductase; HET: HCA CFN CLF PGE PG4 P6G 1PE; 2.10A {Azotobacter vinelandii} SCOP: c.37.1.10 PDB: 1g1m_A 1g5p_A 1m1y_E* 1m34_E* 1n2c_E* 1nip_A* 1fp6_A* 2afi_E* 2afk_E* 2nip_A 1de0_A 1xcp_A* 1xdb_A 1xd8_A 1xd9_A* 1g20_E* 1g21_E* 2c8v_A* 1rw4_A
Probab=67.10 E-value=6.3 Score=28.52 Aligned_cols=27 Identities=30% Similarity=0.506 Sum_probs=20.6
Q ss_pred CCCCCHHHHHHHHHHHHHHhCCCCCCCCEEEE
Q psy2050 38 EMGLGKTIQVISFLAYLHEAGLSRPKSPHLII 69 (131)
Q Consensus 38 ~mGlGKT~~~ia~l~~~~~~~~~~~~~~~LIv 69 (131)
-=|-|||..++.+...+...+ .++|+|
T Consensus 10 KGGvGKTT~a~nLA~~La~~G-----~rVlli 36 (289)
T 2afh_E 10 KGGIGKSTTTQNLVAALAEMG-----KKVMIV 36 (289)
T ss_dssp CTTSSHHHHHHHHHHHHHHTT-----CCEEEE
T ss_pred CCcCcHHHHHHHHHHHHHHCC-----CeEEEE
Confidence 457999999999988887654 456665
No 137
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=66.72 E-value=10 Score=24.62 Aligned_cols=25 Identities=28% Similarity=0.316 Sum_probs=20.0
Q ss_pred CeeeeCCCCCCHHHHHHHHHHHHHH
Q psy2050 32 CGILADEMGLGKTIQVISFLAYLHE 56 (131)
Q Consensus 32 g~ilad~mGlGKT~~~ia~l~~~~~ 56 (131)
..++..+.|.|||..+-++...+..
T Consensus 45 ~~ll~G~~G~GKT~l~~~~~~~~~~ 69 (195)
T 1jbk_A 45 NPVLIGEPGVGKTAIVEGLAQRIIN 69 (195)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred ceEEECCCCCCHHHHHHHHHHHHHh
Confidence 4577999999999998887766544
No 138
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=66.04 E-value=5 Score=29.77 Aligned_cols=39 Identities=18% Similarity=0.178 Sum_probs=26.5
Q ss_pred CeeeeCCCCCCHHHHHHHHHHHHHHhCCCCCCCCEEEEecCCchhhh
Q psy2050 32 CGILADEMGLGKTIQVISFLAYLHEAGLSRPKSPHLIIVPSSTLCKY 78 (131)
Q Consensus 32 g~ilad~mGlGKT~~~ia~l~~~~~~~~~~~~~~~LIv~P~sl~~~W 78 (131)
+-+|..+.|.|||..+-++.... ..+++.|....+...|
T Consensus 53 ~vLl~GppGtGKT~la~aia~~~--------~~~~~~v~~~~l~~~~ 91 (322)
T 3eie_A 53 GILLYGPPGTGKSYLAKAVATEA--------NSTFFSVSSSDLVSKW 91 (322)
T ss_dssp EEEEECSSSSCHHHHHHHHHHHH--------TCEEEEEEHHHHHTTT
T ss_pred eEEEECCCCCcHHHHHHHHHHHH--------CCCEEEEchHHHhhcc
Confidence 45779999999999888775543 3556655554444444
No 139
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=65.78 E-value=4 Score=30.03 Aligned_cols=36 Identities=11% Similarity=0.032 Sum_probs=25.1
Q ss_pred CeeeeCCCCCCHHHHHHHHHHHHHHhCCCCCCCCEEEEecCCch
Q psy2050 32 CGILADEMGLGKTIQVISFLAYLHEAGLSRPKSPHLIIVPSSTL 75 (131)
Q Consensus 32 g~ilad~mGlGKT~~~ia~l~~~~~~~~~~~~~~~LIv~P~sl~ 75 (131)
+.+|..+.|.|||..+-++...+ ..+++.+....+.
T Consensus 38 ~lLl~GppGtGKT~la~aiA~~l--------~~~~i~v~~~~l~ 73 (293)
T 3t15_A 38 ILGIWGGKGQGKSFQCELVFRKM--------GINPIMMSAGELE 73 (293)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHH--------TCCCEEEEHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh--------CCCEEEEeHHHhh
Confidence 45678999999999988876655 3555555544443
No 140
>3q9l_A Septum site-determining protein MIND; ATPase, bacterial cell division inhibitor, MINC, MINE, cell hydrolase; HET: ATP; 2.34A {Escherichia coli} PDB: 3r9i_A* 3r9j_A*
Probab=65.53 E-value=11 Score=26.50 Aligned_cols=33 Identities=21% Similarity=0.296 Sum_probs=24.4
Q ss_pred eeeCCCCCCHHHHHHHHHHHHHHhCCCCCCCCEEEEec
Q psy2050 34 ILADEMGLGKTIQVISFLAYLHEAGLSRPKSPHLIIVP 71 (131)
Q Consensus 34 ilad~mGlGKT~~~ia~l~~~~~~~~~~~~~~~LIv~P 71 (131)
+.+---|.|||..++.+...+...+ .++|+|=-
T Consensus 7 v~s~kgGvGKTt~a~~LA~~la~~g-----~~VlliD~ 39 (260)
T 3q9l_A 7 VTSGKGGVGKTTSSAAIATGLAQKG-----KKTVVIDF 39 (260)
T ss_dssp EECSSTTSSHHHHHHHHHHHHHHTT-----CCEEEEEC
T ss_pred EECCCCCCcHHHHHHHHHHHHHhCC-----CcEEEEEC
Confidence 4455668999999999988887653 56777654
No 141
>1hyq_A MIND, cell division inhibitor (MIND-1); MINC, FTSZ, bacterial cell division, cell cycle; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.10
Probab=65.32 E-value=11 Score=26.53 Aligned_cols=33 Identities=21% Similarity=0.225 Sum_probs=25.0
Q ss_pred eeeCCCCCCHHHHHHHHHHHHHHhCCCCCCCCEEEEec
Q psy2050 34 ILADEMGLGKTIQVISFLAYLHEAGLSRPKSPHLIIVP 71 (131)
Q Consensus 34 ilad~mGlGKT~~~ia~l~~~~~~~~~~~~~~~LIv~P 71 (131)
+.+-.-|.|||..++.+...+...+ .++|+|-.
T Consensus 7 v~s~kgGvGKTt~a~~LA~~la~~g-----~~VlliD~ 39 (263)
T 1hyq_A 7 VASGKGGTGKTTITANLGVALAQLG-----HDVTIVDA 39 (263)
T ss_dssp EEESSSCSCHHHHHHHHHHHHHHTT-----CCEEEEEC
T ss_pred EECCCCCCCHHHHHHHHHHHHHhCC-----CcEEEEEC
Confidence 4456678999999999988877653 56777763
No 142
>3k9g_A PF-32 protein; ssgcid, SBRI, decode biostructures, UW, NIH, niaid, borellia burgdorferi, plasmid partition protein, iodide; 2.25A {Borrelia burgdorferi} PDB: 3k9h_A
Probab=65.02 E-value=6.3 Score=28.08 Aligned_cols=32 Identities=25% Similarity=0.311 Sum_probs=23.4
Q ss_pred eeeeCCCCCCHHHHHHHHHHHHHHhCCCCCCCCEEEEe
Q psy2050 33 GILADEMGLGKTIQVISFLAYLHEAGLSRPKSPHLIIV 70 (131)
Q Consensus 33 ~ilad~mGlGKT~~~ia~l~~~~~~~~~~~~~~~LIv~ 70 (131)
++.+---|.|||..++.+...+. .+ .++|+|=
T Consensus 31 ~v~s~kGGvGKTT~a~~LA~~la-~g-----~~VlliD 62 (267)
T 3k9g_A 31 TIASIKGGVGKSTSAIILATLLS-KN-----NKVLLID 62 (267)
T ss_dssp EECCSSSSSCHHHHHHHHHHHHT-TT-----SCEEEEE
T ss_pred EEEeCCCCchHHHHHHHHHHHHH-CC-----CCEEEEE
Confidence 34466678999999999888776 43 6677663
No 143
>3ug7_A Arsenical pump-driving ATPase; tail-anchored, membrane protein, targeting factor, ATP-bindi TRC40, ARSA, nucleotide-binding; HET: ADP; 2.90A {Methanocaldococcus jannaschii} PDB: 3ug6_A*
Probab=64.32 E-value=15 Score=27.73 Aligned_cols=33 Identities=27% Similarity=0.347 Sum_probs=25.2
Q ss_pred eeeeCCCCCCHHHHHHHHHHHHHHhCCCCCCCCEEEEe
Q psy2050 33 GILADEMGLGKTIQVISFLAYLHEAGLSRPKSPHLIIV 70 (131)
Q Consensus 33 ~ilad~mGlGKT~~~ia~l~~~~~~~~~~~~~~~LIv~ 70 (131)
.+.+.--|-|||..+.++...+...+ .++|+|-
T Consensus 29 ~v~sgKGGvGKTTvA~~LA~~lA~~G-----~rVLlvD 61 (349)
T 3ug7_A 29 IMFGGKGGVGKTTMSAATGVYLAEKG-----LKVVIVS 61 (349)
T ss_dssp EEEECSSSTTHHHHHHHHHHHHHHSS-----CCEEEEE
T ss_pred EEEeCCCCccHHHHHHHHHHHHHHCC-----CeEEEEe
Confidence 45567788999999999988877654 5677665
No 144
>3u4q_B ATP-dependent helicase/deoxyribonuclease subunit; helicase, nuclease, double strand DNA repair, protein-DNA CO hydrolase-DNA complex; HET: DNA; 2.80A {Bacillus subtilis} PDB: 3u44_B*
Probab=64.04 E-value=8.6 Score=33.83 Aligned_cols=47 Identities=17% Similarity=0.162 Sum_probs=34.5
Q ss_pred CCCCCCHHHHHHHHHHHHHHhCCCCCCCCEEEEecCCchhhhhh-hhccc
Q psy2050 37 DEMGLGKTIQVISFLAYLHEAGLSRPKSPHLIIVPSSTLCKYKV-PSRWR 85 (131)
Q Consensus 37 d~mGlGKT~~~ia~l~~~~~~~~~~~~~~~LIv~P~sl~~~W~~-~~~~~ 85 (131)
..-|.|||...+.-+..+...+.. +.+.|++||....-+=.+ +.+-.
T Consensus 8 agAGSGKT~~l~~ri~~ll~~~~~--~~~il~lVP~q~TFt~~~rl~~~l 55 (1166)
T 3u4q_B 8 GRSGSGKTKLIINSIQDELRRAPF--GKPIIFLVPDQMTFLMEYELAKTP 55 (1166)
T ss_dssp ECTTSSHHHHHHHHHHHHHHHCTT--SSCEEEECCGGGHHHHHHHHTCCS
T ss_pred eCCCCChHHHHHHHHHHHHHhCCC--CCcEEEEecCcccHHHHHHHHHhh
Confidence 347999999999988887776554 589999999876544334 54444
No 145
>2ph1_A Nucleotide-binding protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 2.70A {Archaeoglobus fulgidus dsm 4304} PDB: 3kb1_A*
Probab=63.26 E-value=12 Score=26.73 Aligned_cols=33 Identities=15% Similarity=0.219 Sum_probs=24.7
Q ss_pred eeeCCCCCCHHHHHHHHHHHHHHhCCCCCCCCEEEEec
Q psy2050 34 ILADEMGLGKTIQVISFLAYLHEAGLSRPKSPHLIIVP 71 (131)
Q Consensus 34 ilad~mGlGKT~~~ia~l~~~~~~~~~~~~~~~LIv~P 71 (131)
+.+---|.|||..+..+...+...+ .++|+|=.
T Consensus 23 v~s~kGGvGKTT~a~nLA~~la~~G-----~~VlliD~ 55 (262)
T 2ph1_A 23 VMSGKGGVGKSTVTALLAVHYARQG-----KKVGILDA 55 (262)
T ss_dssp EECSSSCTTHHHHHHHHHHHHHHTT-----CCEEEEEC
T ss_pred EEcCCCCCCHHHHHHHHHHHHHHCC-----CeEEEEeC
Confidence 4456678999999999888877653 56777653
No 146
>3cio_A ETK, tyrosine-protein kinase ETK; WZC, escherichia coli tyrosine kinase domain, signaling protein, transferase, inner membrane, membrane; 2.50A {Escherichia coli}
Probab=63.25 E-value=12 Score=27.51 Aligned_cols=32 Identities=22% Similarity=0.206 Sum_probs=24.4
Q ss_pred eeeCCCCCCHHHHHHHHHHHHHHhCCCCCCCCEEEEe
Q psy2050 34 ILADEMGLGKTIQVISFLAYLHEAGLSRPKSPHLIIV 70 (131)
Q Consensus 34 ilad~mGlGKT~~~ia~l~~~~~~~~~~~~~~~LIv~ 70 (131)
+.+-.-|-|||..+..+...+...+ .++|+|-
T Consensus 109 vts~kgG~GKTtva~nLA~~lA~~G-----~rVLLID 140 (299)
T 3cio_A 109 ITGATPDSGKTFVSSTLAAVIAQSD-----QKVLFID 140 (299)
T ss_dssp EEESSSSSCHHHHHHHHHHHHHHTT-----CCEEEEE
T ss_pred EECCCCCCChHHHHHHHHHHHHhCC-----CcEEEEE
Confidence 4466779999999999888777653 6677775
No 147
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=63.10 E-value=6 Score=29.94 Aligned_cols=37 Identities=16% Similarity=0.122 Sum_probs=25.3
Q ss_pred CeeeeCCCCCCHHHHHHHHHHHHHHhCCCCCCCCEEEEecCCchh
Q psy2050 32 CGILADEMGLGKTIQVISFLAYLHEAGLSRPKSPHLIIVPSSTLC 76 (131)
Q Consensus 32 g~ilad~mGlGKT~~~ia~l~~~~~~~~~~~~~~~LIv~P~sl~~ 76 (131)
+-+|..+.|.|||..+-++...+ ..+++.|-...+..
T Consensus 86 ~iLL~GppGtGKT~la~ala~~~--------~~~~~~v~~~~l~~ 122 (355)
T 2qp9_X 86 GILLYGPPGTGKSYLAKAVATEA--------NSTFFSVSSSDLVS 122 (355)
T ss_dssp CEEEECSTTSCHHHHHHHHHHHH--------TCEEEEEEHHHHHS
T ss_pred eEEEECCCCCcHHHHHHHHHHHh--------CCCEEEeeHHHHhh
Confidence 56779999999999988876554 35555554444433
No 148
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=62.79 E-value=16 Score=25.80 Aligned_cols=23 Identities=17% Similarity=0.172 Sum_probs=17.5
Q ss_pred cccCeeeeCCCCCCHHHHHHHHH
Q psy2050 29 QQLCGILADEMGLGKTIQVISFL 51 (131)
Q Consensus 29 ~~~g~ilad~mGlGKT~~~ia~l 51 (131)
....-++..+.|.|||..+-++.
T Consensus 28 ~~~~vll~G~~GtGKt~la~~i~ 50 (265)
T 2bjv_A 28 LDKPVLIIGERGTGKELIASRLH 50 (265)
T ss_dssp SCSCEEEECCTTSCHHHHHHHHH
T ss_pred CCCCEEEECCCCCcHHHHHHHHH
Confidence 44466789999999998776553
No 149
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=62.79 E-value=21 Score=24.54 Aligned_cols=43 Identities=21% Similarity=0.201 Sum_probs=30.1
Q ss_pred eeeeCCCCCCHHHHHHHHHHHHHHhCCCCCCCCEEEEecCCchhhhhh
Q psy2050 33 GILADEMGLGKTIQVISFLAYLHEAGLSRPKSPHLIIVPSSTLCKYKV 80 (131)
Q Consensus 33 ~ilad~mGlGKT~~~ia~l~~~~~~~~~~~~~~~LIv~P~sl~~~W~~ 80 (131)
.+++.+.|.|||.-++.++...... ..+++.+.-.....+..+
T Consensus 26 ~~i~G~~GsGKTtl~~~~~~~~~~~-----~~~v~~~~~e~~~~~~~~ 68 (247)
T 2dr3_A 26 VLLSGGPGTGKTIFSQQFLWNGLKM-----GEPGIYVALEEHPVQVRQ 68 (247)
T ss_dssp EEEEECTTSSHHHHHHHHHHHHHHT-----TCCEEEEESSSCHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHHhc-----CCeEEEEEccCCHHHHHH
Confidence 4678889999999988877666543 367888776544444444
No 150
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=62.56 E-value=10 Score=24.64 Aligned_cols=25 Identities=28% Similarity=0.312 Sum_probs=19.4
Q ss_pred CeeeeCCCCCCHHHHHHHHHHHHHH
Q psy2050 32 CGILADEMGLGKTIQVISFLAYLHE 56 (131)
Q Consensus 32 g~ilad~mGlGKT~~~ia~l~~~~~ 56 (131)
+-++..+.|.|||..+-++...+..
T Consensus 45 ~vll~G~~G~GKT~la~~~~~~~~~ 69 (187)
T 2p65_A 45 NPILLGDPGVGKTAIVEGLAIKIVQ 69 (187)
T ss_dssp EEEEESCGGGCHHHHHHHHHHHHHT
T ss_pred ceEEECCCCCCHHHHHHHHHHHHHh
Confidence 4577899999999988877665543
No 151
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=61.86 E-value=13 Score=27.13 Aligned_cols=22 Identities=18% Similarity=0.147 Sum_probs=17.5
Q ss_pred cCeeeeCCCCCCHHHHHHHHHH
Q psy2050 31 LCGILADEMGLGKTIQVISFLA 52 (131)
Q Consensus 31 ~g~ilad~mGlGKT~~~ia~l~ 52 (131)
.+-+|..+.|.|||..+-++..
T Consensus 50 ~~vLL~Gp~GtGKT~la~ala~ 71 (301)
T 3cf0_A 50 KGVLFYGPPGCGKTLLAKAIAN 71 (301)
T ss_dssp SEEEEECSSSSSHHHHHHHHHH
T ss_pred ceEEEECCCCcCHHHHHHHHHH
Confidence 3567799999999998877654
No 152
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=61.37 E-value=35 Score=23.06 Aligned_cols=41 Identities=15% Similarity=-0.078 Sum_probs=26.8
Q ss_pred HHHHHHHHHHhhc--ccCeeeeCCCCCCHHHHHHHHHHHHHHh
Q psy2050 17 LVGLNWLAVMHNQ--QLCGILADEMGLGKTIQVISFLAYLHEA 57 (131)
Q Consensus 17 ~~~v~~l~~~~~~--~~g~ilad~mGlGKT~~~ia~l~~~~~~ 57 (131)
.+.+..+...... ...-++..+.|.|||..+-++.......
T Consensus 37 ~~~~~~l~~~~~~~~~~~~ll~G~~G~GKT~la~~l~~~~~~~ 79 (242)
T 3bos_A 37 DELIGALKSAASGDGVQAIYLWGPVKSGRTHLIHAACARANEL 79 (242)
T ss_dssp HHHHHHHHHHHHTCSCSEEEEECSTTSSHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 4455555544433 3345779999999999888776655543
No 153
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=61.36 E-value=13 Score=26.88 Aligned_cols=44 Identities=18% Similarity=0.252 Sum_probs=29.4
Q ss_pred eeeeCCCCCCHHHHHHHHHHHHHHhCCCCCCCCEEEEecCCchhh
Q psy2050 33 GILADEMGLGKTIQVISFLAYLHEAGLSRPKSPHLIIVPSSTLCK 77 (131)
Q Consensus 33 ~ilad~mGlGKT~~~ia~l~~~~~~~~~~~~~~~LIv~P~sl~~~ 77 (131)
-+|..+.|.|||..+-++...+...+.. ...+++.+-+..+...
T Consensus 70 vll~G~~GtGKT~la~~la~~l~~~~~~-~~~~~~~~~~~~l~~~ 113 (309)
T 3syl_A 70 MSFTGNPGTGKTTVALKMAGLLHRLGYV-RKGHLVSVTRDDLVGQ 113 (309)
T ss_dssp EEEEECTTSSHHHHHHHHHHHHHHTTSS-SSCCEEEECGGGTCCS
T ss_pred EEEECCCCCCHHHHHHHHHHHHHhcCCc-CCCcEEEEcHHHhhhh
Confidence 5779999999999998877666554332 1346666655555443
No 154
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=61.11 E-value=19 Score=24.10 Aligned_cols=23 Identities=22% Similarity=0.211 Sum_probs=17.9
Q ss_pred eeeeCCCCCCHHHHHHHHHHHHH
Q psy2050 33 GILADEMGLGKTIQVISFLAYLH 55 (131)
Q Consensus 33 ~ilad~mGlGKT~~~ia~l~~~~ 55 (131)
-++..+.|.|||..+-++.....
T Consensus 48 ~ll~G~~G~GKT~l~~~~~~~~~ 70 (250)
T 1njg_A 48 YLFSGTRGVGKTSIARLLAKGLN 70 (250)
T ss_dssp EEEECSTTSCHHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHhc
Confidence 47799999999998877765443
No 155
>3bfv_A CAPA1, CAPB2, membrane protein CAPA1, protein tyrosine kinase; chimerical protein, P-loop protein, capsule biogenesis/degradation; HET: ADP; 1.80A {Staphylococcus aureus} PDB: 2ved_A*
Probab=60.67 E-value=14 Score=26.81 Aligned_cols=32 Identities=25% Similarity=0.340 Sum_probs=23.6
Q ss_pred eeeCCCCCCHHHHHHHHHHHHHHhCCCCCCCCEEEEe
Q psy2050 34 ILADEMGLGKTIQVISFLAYLHEAGLSRPKSPHLIIV 70 (131)
Q Consensus 34 ilad~mGlGKT~~~ia~l~~~~~~~~~~~~~~~LIv~ 70 (131)
+.+-.-|-|||..+..+...+...+ .++|+|-
T Consensus 87 vts~kgG~GKTt~a~nLA~~lA~~G-----~rVLLID 118 (271)
T 3bfv_A 87 ITSEAPGAGKSTIAANLAVAYAQAG-----YKTLIVD 118 (271)
T ss_dssp EECSSTTSSHHHHHHHHHHHHHHTT-----CCEEEEE
T ss_pred EECCCCCCcHHHHHHHHHHHHHhCC-----CeEEEEe
Confidence 3355679999999999888777653 5677663
No 156
>3iqw_A Tail-anchored protein targeting factor GET3; ATPase, Zn binding, protein transport; HET: ANP; 3.00A {Chaetomium thermophilum} PDB: 3iqx_A* 3ibg_A*
Probab=59.71 E-value=7.9 Score=29.32 Aligned_cols=33 Identities=21% Similarity=0.305 Sum_probs=23.9
Q ss_pred eeeCCCCCCHHHHHHHHHHHHHHhCCCCCCCCEEEEec
Q psy2050 34 ILADEMGLGKTIQVISFLAYLHEAGLSRPKSPHLIIVP 71 (131)
Q Consensus 34 ilad~mGlGKT~~~ia~l~~~~~~~~~~~~~~~LIv~P 71 (131)
+...--|-|||..+.++...+...+ .++|+|--
T Consensus 20 ~~sgkGGvGKTt~a~~lA~~la~~g-----~~vllid~ 52 (334)
T 3iqw_A 20 FVGGKGGVGKTTTSCSLAIQLAKVR-----RSVLLLST 52 (334)
T ss_dssp EEECSTTSSHHHHHHHHHHHHTTSS-----SCEEEEEC
T ss_pred EEeCCCCccHHHHHHHHHHHHHhCC-----CcEEEEEC
Confidence 4466678999999999887776543 56666654
No 157
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=59.71 E-value=16 Score=26.34 Aligned_cols=43 Identities=16% Similarity=0.157 Sum_probs=29.2
Q ss_pred eeeeCCCCCCHHHHHHHHHHHHHHhCCCCCCCCEEE-Ee-cCCchhhhhh
Q psy2050 33 GILADEMGLGKTIQVISFLAYLHEAGLSRPKSPHLI-IV-PSSTLCKYKV 80 (131)
Q Consensus 33 ~ilad~mGlGKT~~~ia~l~~~~~~~~~~~~~~~LI-v~-P~sl~~~W~~ 80 (131)
-++..--|.|||-.++.+...+...+ ..+++ .+ |-.-...|..
T Consensus 9 I~~~~kgGvGKTt~a~~la~~l~~~G-----~~V~v~d~D~q~~~~~~al 53 (228)
T 2r8r_A 9 VFLGAAPGVGKTYAMLQAAHAQLRQG-----VRVMAGVVETHGRAETEAL 53 (228)
T ss_dssp EEEESSTTSSHHHHHHHHHHHHHHTT-----CCEEEEECCCTTCHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHHHHHHHCC-----CCEEEEEeCCCCChhHHHH
Confidence 46688899999999999988887765 34443 33 3334555655
No 158
>3u4q_A ATP-dependent helicase/nuclease subunit A; helicase, nuclease, double strand DNA repair, protein-DNA CO hydrolase-DNA complex; HET: DNA; 2.80A {Bacillus subtilis} PDB: 3u44_A*
Probab=59.65 E-value=14 Score=32.89 Aligned_cols=60 Identities=13% Similarity=0.020 Sum_probs=39.8
Q ss_pred CCCCCcchHHHHHHHHHHHHhhcccCeeeeCCCCCCHHHHHHHHHHHHHHhCCC-CCCCCEEEEecC
Q psy2050 7 ARNLKLAGYQLVGLNWLAVMHNQQLCGILADEMGLGKTIQVISFLAYLHEAGLS-RPKSPHLIIVPS 72 (131)
Q Consensus 7 ~~~~~L~~~Q~~~v~~l~~~~~~~~g~ilad~mGlGKT~~~ia~l~~~~~~~~~-~~~~~~LIv~P~ 72 (131)
..+.+|-+-|.+++.. .+..-++.-.-|.|||...+.-+..+...+.. ......|++++.
T Consensus 6 ~~~~~~t~eQ~~~i~~------~~~~~~v~a~AGSGKT~vl~~ri~~ll~~~~~~~~~~~il~~Tft 66 (1232)
T 3u4q_A 6 PADSTWTDDQWNAIVS------TGQDILVAAAAGSGKTAVLVERMIRKITAEENPIDVDRLLVVTFT 66 (1232)
T ss_dssp ----CCCHHHHHHHHC------CSSCEEEEECTTCCHHHHHHHHHHHHHSCSSSCCCGGGEEEECSS
T ss_pred CCCCCCCHHHHHHHhC------CCCCEEEEecCCCcHHHHHHHHHHHHHhcCCCCCCccceEEEecc
Confidence 3557788999998832 33455678889999999988877666555321 124678999885
No 159
>3la6_A Tyrosine-protein kinase WZC; P-loop protein, nucleotide binding domain, walker A motif, B protein kinase, oligomerization; HET: ADP; 3.20A {Escherichia coli}
Probab=59.12 E-value=15 Score=26.95 Aligned_cols=33 Identities=15% Similarity=0.165 Sum_probs=24.8
Q ss_pred eeeeCCCCCCHHHHHHHHHHHHHHhCCCCCCCCEEEEe
Q psy2050 33 GILADEMGLGKTIQVISFLAYLHEAGLSRPKSPHLIIV 70 (131)
Q Consensus 33 ~ilad~mGlGKT~~~ia~l~~~~~~~~~~~~~~~LIv~ 70 (131)
.+.+-.-|-|||..+..+...+...+ .++|+|=
T Consensus 96 ~vts~kgG~GKTtva~nLA~~lA~~G-----~rVLLID 128 (286)
T 3la6_A 96 MMTGVSPSIGMTFVCANLAAVISQTN-----KRVLLID 128 (286)
T ss_dssp EEEESSSSSSHHHHHHHHHHHHHTTT-----CCEEEEE
T ss_pred EEECCCCCCcHHHHHHHHHHHHHhCC-----CCEEEEe
Confidence 34567789999999999887776543 5677774
No 160
>3ea0_A ATPase, para family; alpha-beta-alpha sandwich, structural genomics, PSI-2, prote structure initiative; HET: ATP; 2.20A {Chlorobium tepidum}
Probab=59.00 E-value=15 Score=25.49 Aligned_cols=33 Identities=15% Similarity=0.112 Sum_probs=23.6
Q ss_pred eeeCCCCCCHHHHHHHHHHHHHHh-CCCCCCCCEEEEec
Q psy2050 34 ILADEMGLGKTIQVISFLAYLHEA-GLSRPKSPHLIIVP 71 (131)
Q Consensus 34 ilad~mGlGKT~~~ia~l~~~~~~-~~~~~~~~~LIv~P 71 (131)
+.+--=|-|||..++.+...+... + .++|+|=-
T Consensus 9 v~s~kGGvGKTt~a~~LA~~la~~~g-----~~VlliD~ 42 (245)
T 3ea0_A 9 FVSAKGGDGGSCIAANFAFALSQEPD-----IHVLAVDI 42 (245)
T ss_dssp EEESSTTSSHHHHHHHHHHHHTTSTT-----CCEEEEEC
T ss_pred EECCCCCcchHHHHHHHHHHHHhCcC-----CCEEEEEC
Confidence 445566899999999988877665 3 56666643
No 161
>2woj_A ATPase GET3; tail-anchored, membrane protein, targeting factor, endoplasmic reticulum, TRC40, ATP-binding, golgi apparatus; HET: ADP; 1.99A {Saccharomyces cerevisiae} PDB: 3h84_A 3zs8_A 3zs9_A* 3sja_A 3sjb_A 3sjc_A 3sjd_A* 3idq_A 3a36_A 3a37_A*
Probab=58.85 E-value=8.7 Score=29.20 Aligned_cols=34 Identities=21% Similarity=0.280 Sum_probs=25.1
Q ss_pred eeeeCCCCCCHHHHHHHHHHHHH--HhCCCCCCCCEEEEec
Q psy2050 33 GILADEMGLGKTIQVISFLAYLH--EAGLSRPKSPHLIIVP 71 (131)
Q Consensus 33 ~ilad~mGlGKT~~~ia~l~~~~--~~~~~~~~~~~LIv~P 71 (131)
.+.+.--|-|||..+.++...+. ..+ .++|+|-.
T Consensus 21 ~v~sgKGGvGKTTvaanLA~~lA~~~~G-----~rVLLvD~ 56 (354)
T 2woj_A 21 IFVGGKGGVGKTTSSCSIAIQMALSQPN-----KQFLLIST 56 (354)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHHHHCTT-----SCEEEEEC
T ss_pred EEEeCCCCCcHHHHHHHHHHHHHHhcCC-----CeEEEEEC
Confidence 34466778999999999888877 443 56777655
No 162
>3pg5_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 3.30A {Corynebacterium diphtheriae}
Probab=58.84 E-value=7.1 Score=29.64 Aligned_cols=28 Identities=25% Similarity=0.382 Sum_probs=21.1
Q ss_pred CCCCCCHHHHHHHHHHHHHHhCCCCCCCCEEEE
Q psy2050 37 DEMGLGKTIQVISFLAYLHEAGLSRPKSPHLII 69 (131)
Q Consensus 37 d~mGlGKT~~~ia~l~~~~~~~~~~~~~~~LIv 69 (131)
---|.|||..++.+...+...+ .++|+|
T Consensus 9 ~KGGvGKTT~a~nLA~~LA~~G-----~rVLlI 36 (361)
T 3pg5_A 9 NKGGVGKTTLSTNVAHYFALQG-----KRVLYV 36 (361)
T ss_dssp SSCCHHHHHHHHHHHHHHHHTT-----CCEEEE
T ss_pred CCCCCcHHHHHHHHHHHHHhCC-----CcEEEE
Confidence 3447899999999887777643 667776
No 163
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=57.95 E-value=8 Score=31.07 Aligned_cols=25 Identities=12% Similarity=0.026 Sum_probs=19.1
Q ss_pred hcccCeeeeCCCCCCHHHHHHHHHH
Q psy2050 28 NQQLCGILADEMGLGKTIQVISFLA 52 (131)
Q Consensus 28 ~~~~g~ilad~mGlGKT~~~ia~l~ 52 (131)
..+..-+|..+.|.|||..+-++..
T Consensus 39 ~~~~~VLL~GpPGtGKT~LAraLa~ 63 (500)
T 3nbx_X 39 LSGESVFLLGPPGIAKSLIARRLKF 63 (500)
T ss_dssp HHTCEEEEECCSSSSHHHHHHHGGG
T ss_pred hcCCeeEeecCchHHHHHHHHHHHH
Confidence 3555678899999999997776543
No 164
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=57.29 E-value=12 Score=24.06 Aligned_cols=22 Identities=18% Similarity=0.030 Sum_probs=16.6
Q ss_pred cccCeeeeCCCCCCHHHHHHHH
Q psy2050 29 QQLCGILADEMGLGKTIQVISF 50 (131)
Q Consensus 29 ~~~g~ilad~mGlGKT~~~ia~ 50 (131)
....-++..+.|.|||..|-++
T Consensus 26 ~~~~vll~G~~GtGKt~lA~~i 47 (143)
T 3co5_A 26 RTSPVFLTGEAGSPFETVARYF 47 (143)
T ss_dssp CSSCEEEEEETTCCHHHHHGGG
T ss_pred CCCcEEEECCCCccHHHHHHHH
Confidence 4446778999999999866543
No 165
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=57.04 E-value=25 Score=23.27 Aligned_cols=25 Identities=24% Similarity=0.267 Sum_probs=19.2
Q ss_pred CeeeeCCCCCCHHHHHHHHHHHHHH
Q psy2050 32 CGILADEMGLGKTIQVISFLAYLHE 56 (131)
Q Consensus 32 g~ilad~mGlGKT~~~ia~l~~~~~ 56 (131)
.-++..+.|.|||..+-++...+..
T Consensus 40 ~~ll~G~~G~GKT~l~~~l~~~~~~ 64 (226)
T 2chg_A 40 HLLFSGPPGTGKTATAIALARDLFG 64 (226)
T ss_dssp CEEEECSTTSSHHHHHHHHHHHHHG
T ss_pred eEEEECCCCCCHHHHHHHHHHHHhc
Confidence 3577999999999988877655533
No 166
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=56.97 E-value=13 Score=27.53 Aligned_cols=40 Identities=20% Similarity=0.155 Sum_probs=26.2
Q ss_pred CeeeeCCCCCCHHHHHHHHHHHHHHhCCCCCCCCEEEEecCCchhhh
Q psy2050 32 CGILADEMGLGKTIQVISFLAYLHEAGLSRPKSPHLIIVPSSTLCKY 78 (131)
Q Consensus 32 g~ilad~mGlGKT~~~ia~l~~~~~~~~~~~~~~~LIv~P~sl~~~W 78 (131)
+-+|..+.|.|||..+-++.... . ..+++.+....+...|
T Consensus 47 ~iLL~GppGtGKT~la~ala~~~----~---~~~~~~i~~~~l~~~~ 86 (322)
T 1xwi_A 47 GILLFGPPGTGKSYLAKAVATEA----N---NSTFFSISSSDLVSKW 86 (322)
T ss_dssp EEEEESSSSSCHHHHHHHHHHHT----T---SCEEEEEECCSSCCSS
T ss_pred eEEEECCCCccHHHHHHHHHHHc----C---CCcEEEEEhHHHHhhh
Confidence 45779999999999888765433 0 2455555555555444
No 167
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=56.19 E-value=27 Score=26.06 Aligned_cols=22 Identities=23% Similarity=0.241 Sum_probs=17.5
Q ss_pred CeeeeCCCCCCHHHHHHHHHHH
Q psy2050 32 CGILADEMGLGKTIQVISFLAY 53 (131)
Q Consensus 32 g~ilad~mGlGKT~~~ia~l~~ 53 (131)
+-+|..+.|.|||..|-++...
T Consensus 53 ~vll~GppGtGKT~la~~ia~~ 74 (363)
T 3hws_A 53 NILLIGPTGSGKTLLAETLARL 74 (363)
T ss_dssp CEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 5677999999999988776543
No 168
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=56.04 E-value=11 Score=28.39 Aligned_cols=40 Identities=23% Similarity=0.136 Sum_probs=26.6
Q ss_pred cCeeeeCCCCCCHHHHHHHHHHHHHHhCCCCCCCCEEEEecCCchhhh
Q psy2050 31 LCGILADEMGLGKTIQVISFLAYLHEAGLSRPKSPHLIIVPSSTLCKY 78 (131)
Q Consensus 31 ~g~ilad~mGlGKT~~~ia~l~~~~~~~~~~~~~~~LIv~P~sl~~~W 78 (131)
.+-+|..+.|.|||..+-++.... ..+++.+-...+...|
T Consensus 118 ~~vLl~GppGtGKT~la~aia~~~--------~~~~~~i~~~~l~~~~ 157 (357)
T 3d8b_A 118 KGILLFGPPGTGKTLIGKCIASQS--------GATFFSISASSLTSKW 157 (357)
T ss_dssp SEEEEESSTTSSHHHHHHHHHHHT--------TCEEEEEEGGGGCCSS
T ss_pred ceEEEECCCCCCHHHHHHHHHHHc--------CCeEEEEehHHhhccc
Confidence 355779999999999888765432 3566655555554444
No 169
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=56.00 E-value=14 Score=28.08 Aligned_cols=40 Identities=25% Similarity=0.183 Sum_probs=25.2
Q ss_pred cCeeeeCCCCCCHHHHHHHHHHHHHHhCCCCCCCCEEEEecCCchhhh
Q psy2050 31 LCGILADEMGLGKTIQVISFLAYLHEAGLSRPKSPHLIIVPSSTLCKY 78 (131)
Q Consensus 31 ~g~ilad~mGlGKT~~~ia~l~~~~~~~~~~~~~~~LIv~P~sl~~~W 78 (131)
.+-+|..+.|.|||..+-++.... ..+++.+.+..+...|
T Consensus 149 ~~vLL~GppGtGKT~la~aia~~~--------~~~~~~v~~~~l~~~~ 188 (389)
T 3vfd_A 149 RGLLLFGPPGNGKTMLAKAVAAES--------NATFFNISAASLTSKY 188 (389)
T ss_dssp SEEEEESSTTSCHHHHHHHHHHHT--------TCEEEEECSCCC----
T ss_pred ceEEEECCCCCCHHHHHHHHHHhh--------cCcEEEeeHHHhhccc
Confidence 356779999999999888764332 3566666665555443
No 170
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=55.96 E-value=19 Score=26.55 Aligned_cols=40 Identities=13% Similarity=0.081 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHhhccc--CeeeeCCCCCCHHHHHHHHHHHHH
Q psy2050 16 QLVGLNWLAVMHNQQL--CGILADEMGLGKTIQVISFLAYLH 55 (131)
Q Consensus 16 Q~~~v~~l~~~~~~~~--g~ilad~mGlGKT~~~ia~l~~~~ 55 (131)
|.+.+..+......+. .-++..+-|.|||..+-++...+.
T Consensus 30 ~~~~~~~L~~~i~~g~~~~~ll~Gp~G~GKTtla~~la~~l~ 71 (340)
T 1sxj_C 30 QNEVITTVRKFVDEGKLPHLLFYGPPGTGKTSTIVALAREIY 71 (340)
T ss_dssp CHHHHHHHHHHHHTTCCCCEEEECSSSSSHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHc
Confidence 5555555555444444 267789999999999888776553
No 171
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=55.47 E-value=20 Score=26.54 Aligned_cols=36 Identities=11% Similarity=0.069 Sum_probs=27.2
Q ss_pred eeeeCCCCCCHHHHHHHHHHHHHHhCCCCCCCCEEEEecCC
Q psy2050 33 GILADEMGLGKTIQVISFLAYLHEAGLSRPKSPHLIIVPSS 73 (131)
Q Consensus 33 ~ilad~mGlGKT~~~ia~l~~~~~~~~~~~~~~~LIv~P~s 73 (131)
.+++...|.|||.-++.++...... ..+++++....
T Consensus 71 ~li~G~pG~GKTtl~l~ia~~~a~~-----g~~vl~~slE~ 106 (315)
T 3bh0_A 71 VLIAARPSMGKTAFALKQAKNMSDN-----DDVVNLHSLEM 106 (315)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHHTT-----TCEEEEEESSS
T ss_pred EEEEeCCCCCHHHHHHHHHHHHHHc-----CCeEEEEECCC
Confidence 5789999999999888877655443 26888887643
No 172
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=55.36 E-value=15 Score=26.39 Aligned_cols=23 Identities=26% Similarity=0.270 Sum_probs=18.2
Q ss_pred eeeeCCCCCCHHHHHHHHHHHHH
Q psy2050 33 GILADEMGLGKTIQVISFLAYLH 55 (131)
Q Consensus 33 ~ilad~mGlGKT~~~ia~l~~~~ 55 (131)
-++..+.|.|||..+-++...+.
T Consensus 50 ~ll~G~~GtGKt~la~~la~~~~ 72 (311)
T 4fcw_A 50 FLFLGPTGVGKTELAKTLAATLF 72 (311)
T ss_dssp EEEESCSSSSHHHHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHHHHHc
Confidence 46789999999998887665543
No 173
>2xj4_A MIPZ; replication, cell division, ATPase, WACA; 1.60A {Caulobacter vibrioides} PDB: 2xj9_A* 2xit_A
Probab=54.96 E-value=17 Score=26.25 Aligned_cols=30 Identities=20% Similarity=0.307 Sum_probs=22.5
Q ss_pred eCCCCCCHHHHHHHHHHHHHHhCCCCCCCCEEEEe
Q psy2050 36 ADEMGLGKTIQVISFLAYLHEAGLSRPKSPHLIIV 70 (131)
Q Consensus 36 ad~mGlGKT~~~ia~l~~~~~~~~~~~~~~~LIv~ 70 (131)
+---|.|||..+..+...+...+ .++|+|=
T Consensus 11 s~KGGvGKTT~a~nLA~~La~~G-----~~VlliD 40 (286)
T 2xj4_A 11 NEKGGAGKSTIAVHLVTALLYGG-----AKVAVID 40 (286)
T ss_dssp CSSSCTTHHHHHHHHHHHHHHTT-----CCEEEEE
T ss_pred cCCCCCCHHHHHHHHHHHHHHCC-----CcEEEEE
Confidence 44568999999999988877653 5677654
No 174
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=54.85 E-value=17 Score=27.66 Aligned_cols=37 Identities=11% Similarity=0.121 Sum_probs=28.5
Q ss_pred eeeeCCCCCCHHHHHHHHHHHHHHhCCCCCCCCEEEEecCCc
Q psy2050 33 GILADEMGLGKTIQVISFLAYLHEAGLSRPKSPHLIIVPSST 74 (131)
Q Consensus 33 ~ilad~mGlGKT~~~ia~l~~~~~~~~~~~~~~~LIv~P~sl 74 (131)
.+++...|.|||.-++.++...... ..+++++....-
T Consensus 49 iiIaG~pG~GKTt~al~ia~~~a~~-----g~~Vl~fSlEms 85 (338)
T 4a1f_A 49 VIIGARPSMGKTSLMMNMVLSALND-----DRGVAVFSLEMS 85 (338)
T ss_dssp EEEEECTTSCHHHHHHHHHHHHHHT-----TCEEEEEESSSC
T ss_pred EEEEeCCCCCHHHHHHHHHHHHHHc-----CCeEEEEeCCCC
Confidence 5779999999999998887666553 478888876443
No 175
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=54.46 E-value=18 Score=28.45 Aligned_cols=36 Identities=11% Similarity=0.069 Sum_probs=28.3
Q ss_pred eeeeCCCCCCHHHHHHHHHHHHHHhCCCCCCCCEEEEecCC
Q psy2050 33 GILADEMGLGKTIQVISFLAYLHEAGLSRPKSPHLIIVPSS 73 (131)
Q Consensus 33 ~ilad~mGlGKT~~~ia~l~~~~~~~~~~~~~~~LIv~P~s 73 (131)
.+++...|.|||.-++.++...... ..+++++...-
T Consensus 200 iiIaG~pG~GKTtlal~ia~~~a~~-----g~~vl~fSlEm 235 (444)
T 3bgw_A 200 VLIAARPSMGKTAFALKQAKNMSDN-----DDVVNLHSLEM 235 (444)
T ss_dssp EEEEECSSSSHHHHHHHHHHHHHHT-----TCEEEEECSSS
T ss_pred EEEEeCCCCChHHHHHHHHHHHHHc-----CCEEEEEECCC
Confidence 5789999999999999887766554 26788887643
No 176
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=53.84 E-value=22 Score=27.23 Aligned_cols=40 Identities=20% Similarity=0.164 Sum_probs=27.1
Q ss_pred eeeeCCCCCCHHHHHHHHHHHHHHhCCCCCCCCEEEEecCCchhh
Q psy2050 33 GILADEMGLGKTIQVISFLAYLHEAGLSRPKSPHLIIVPSSTLCK 77 (131)
Q Consensus 33 ~ilad~mGlGKT~~~ia~l~~~~~~~~~~~~~~~LIv~P~sl~~~ 77 (131)
.+++.+.|.|||.-++.++......+ .++++|.......+
T Consensus 77 i~I~G~pGsGKTtlal~la~~~~~~g-----~~vlyi~~E~s~~~ 116 (366)
T 1xp8_A 77 TEIYGPESGGKTTLALAIVAQAQKAG-----GTCAFIDAEHALDP 116 (366)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHHHTT-----CCEEEEESSCCCCH
T ss_pred EEEEcCCCCChHHHHHHHHHHHHHCC-----CeEEEEECCCChhH
Confidence 46688999999999998877665432 45666655443333
No 177
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=53.73 E-value=8.9 Score=27.18 Aligned_cols=24 Identities=21% Similarity=0.142 Sum_probs=18.9
Q ss_pred cCeeeeCCCCCCHHHHHHHHHHHH
Q psy2050 31 LCGILADEMGLGKTIQVISFLAYL 54 (131)
Q Consensus 31 ~g~ilad~mGlGKT~~~ia~l~~~ 54 (131)
.+-+|..+.|.|||..+-++....
T Consensus 45 ~~vll~G~~GtGKT~la~~la~~~ 68 (268)
T 2r62_A 45 KGVLLVGPPGTGKTLLAKAVAGEA 68 (268)
T ss_dssp SCCCCBCSSCSSHHHHHHHHHHHH
T ss_pred ceEEEECCCCCcHHHHHHHHHHHh
Confidence 356779999999999888776543
No 178
>1wcv_1 SOJ, segregation protein; ATPase, bacterial, chromosome segregation; 1.6A {Thermus thermophilus} PDB: 2bej_A* 2bek_A*
Probab=53.67 E-value=13 Score=26.27 Aligned_cols=32 Identities=31% Similarity=0.513 Sum_probs=23.8
Q ss_pred eeeCCCCCCHHHHHHHHHHHHHHhCCCCCCCCEEEEe
Q psy2050 34 ILADEMGLGKTIQVISFLAYLHEAGLSRPKSPHLIIV 70 (131)
Q Consensus 34 ilad~mGlGKT~~~ia~l~~~~~~~~~~~~~~~LIv~ 70 (131)
+.+---|.|||..+..+...+...+ .++|+|=
T Consensus 11 v~s~kGGvGKTt~a~~LA~~la~~g-----~~VlliD 42 (257)
T 1wcv_1 11 LANQKGGVGKTTTAINLAAYLARLG-----KRVLLVD 42 (257)
T ss_dssp ECCSSCCHHHHHHHHHHHHHHHHTT-----CCEEEEE
T ss_pred EEeCCCCchHHHHHHHHHHHHHHCC-----CCEEEEE
Confidence 3345568999999999888777653 6777764
No 179
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=53.39 E-value=20 Score=25.46 Aligned_cols=22 Identities=18% Similarity=0.058 Sum_probs=17.8
Q ss_pred CeeeeCCCCCCHHHHHHHHHHH
Q psy2050 32 CGILADEMGLGKTIQVISFLAY 53 (131)
Q Consensus 32 g~ilad~mGlGKT~~~ia~l~~ 53 (131)
+-+|..+.|.|||..+-++...
T Consensus 66 ~vLl~G~~GtGKT~la~~ia~~ 87 (272)
T 1d2n_A 66 SVLLEGPPHSGKTALAAKIAEE 87 (272)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHHH
Confidence 4577899999999988877654
No 180
>3io3_A DEHA2D07832P; chaperone, membrane traffic, ATPase; HET: ADP; 1.80A {Debaryomyces hansenii}
Probab=52.68 E-value=13 Score=28.35 Aligned_cols=33 Identities=24% Similarity=0.338 Sum_probs=23.4
Q ss_pred eeeCCCCCCHHHHHHHHHHHHH--HhCCCCCCCCEEEEec
Q psy2050 34 ILADEMGLGKTIQVISFLAYLH--EAGLSRPKSPHLIIVP 71 (131)
Q Consensus 34 ilad~mGlGKT~~~ia~l~~~~--~~~~~~~~~~~LIv~P 71 (131)
+...--|-|||..+.++...+. ..+ .++|+|--
T Consensus 22 ~~~gkGGvGKTt~a~~lA~~la~~~~g-----~~vllid~ 56 (348)
T 3io3_A 22 FVGGKGGVGKTTTSSSVAVQLALAQPN-----EQFLLIST 56 (348)
T ss_dssp EEECSTTSSHHHHHHHHHHHHHHHCTT-----SCEEEEEC
T ss_pred EEeCCCCCcHHHHHHHHHHHHHHhcCC-----CeEEEEEC
Confidence 4455678999999999887776 332 56766654
No 181
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=52.46 E-value=18 Score=25.95 Aligned_cols=22 Identities=23% Similarity=0.132 Sum_probs=17.4
Q ss_pred cCeeeeCCCCCCHHHHHHHHHH
Q psy2050 31 LCGILADEMGLGKTIQVISFLA 52 (131)
Q Consensus 31 ~g~ilad~mGlGKT~~~ia~l~ 52 (131)
.+-+|..+.|.|||..+-++..
T Consensus 55 ~~vll~Gp~GtGKT~la~~la~ 76 (297)
T 3b9p_A 55 KGLLLFGPPGNGKTLLARAVAT 76 (297)
T ss_dssp SEEEEESSSSSCHHHHHHHHHH
T ss_pred CeEEEECcCCCCHHHHHHHHHH
Confidence 3557799999999998877654
No 182
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=51.68 E-value=20 Score=25.70 Aligned_cols=40 Identities=20% Similarity=0.131 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHhhccc--CeeeeCCCCCCHHHHHHHHHHHHH
Q psy2050 16 QLVGLNWLAVMHNQQL--CGILADEMGLGKTIQVISFLAYLH 55 (131)
Q Consensus 16 Q~~~v~~l~~~~~~~~--g~ilad~mGlGKT~~~ia~l~~~~ 55 (131)
|.+.+..+......+. .-++..+.|.|||..+-++...+.
T Consensus 30 ~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~la~~l~~~l~ 71 (327)
T 1iqp_A 30 QEHIVKRLKHYVKTGSMPHLLFAGPPGVGKTTAALALARELF 71 (327)
T ss_dssp CHHHHHHHHHHHHHTCCCEEEEESCTTSSHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHcCCCCeEEEECcCCCCHHHHHHHHHHHhc
Confidence 3334443333333333 357799999999998888766553
No 183
>2woo_A ATPase GET3; tail-anchored, membrane protein, targeting factor, endoplasmic reticulum, TRC40, ATP-binding, golgi apparatus; 3.01A {Schizosaccharomyces pombe}
Probab=51.56 E-value=22 Score=26.53 Aligned_cols=33 Identities=24% Similarity=0.288 Sum_probs=24.9
Q ss_pred eeeeCCCCCCHHHHHHHHHHHHHHhCCCCCCCCEEEEe
Q psy2050 33 GILADEMGLGKTIQVISFLAYLHEAGLSRPKSPHLIIV 70 (131)
Q Consensus 33 ~ilad~mGlGKT~~~ia~l~~~~~~~~~~~~~~~LIv~ 70 (131)
.+.+.--|-|||..+.++...+...+ .++|+|-
T Consensus 22 ~v~sgkGGvGKTTva~~LA~~lA~~G-----~rVllvD 54 (329)
T 2woo_A 22 IFVGGKGGVGKTTTSCSLAIQMSKVR-----SSVLLIS 54 (329)
T ss_dssp EEEECSSSSSHHHHHHHHHHHHHTSS-----SCEEEEE
T ss_pred EEEeCCCCCcHHHHHHHHHHHHHHCC-----CeEEEEE
Confidence 45577788999999999888777653 5677663
No 184
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=51.55 E-value=21 Score=26.01 Aligned_cols=20 Identities=20% Similarity=0.179 Sum_probs=15.6
Q ss_pred eeeCCCCCCHHHHHHHHHHH
Q psy2050 34 ILADEMGLGKTIQVISFLAY 53 (131)
Q Consensus 34 ilad~mGlGKT~~~ia~l~~ 53 (131)
+++.+.|.|||..+-++...
T Consensus 52 L~~G~~G~GKT~la~~la~~ 71 (324)
T 3u61_B 52 LHSPSPGTGKTTVAKALCHD 71 (324)
T ss_dssp EECSSTTSSHHHHHHHHHHH
T ss_pred EeeCcCCCCHHHHHHHHHHH
Confidence 55777999999988876543
No 185
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=51.34 E-value=43 Score=24.33 Aligned_cols=39 Identities=10% Similarity=-0.063 Sum_probs=25.6
Q ss_pred CeeeeCCCCCCHHHHHHHHHHHHHHhCCCCCCCCEEEEecCCch
Q psy2050 32 CGILADEMGLGKTIQVISFLAYLHEAGLSRPKSPHLIIVPSSTL 75 (131)
Q Consensus 32 g~ilad~mGlGKT~~~ia~l~~~~~~~~~~~~~~~LIv~P~sl~ 75 (131)
+-++..+.|.|||..+-++...+... ..+++.+-.....
T Consensus 39 ~lll~G~~GtGKT~la~~i~~~~~~~-----~~~~~~i~~~~~~ 77 (324)
T 1l8q_A 39 PIFIYGSVGTGKTHLLQAAGNEAKKR-----GYRVIYSSADDFA 77 (324)
T ss_dssp SEEEECSSSSSHHHHHHHHHHHHHHT-----TCCEEEEEHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHHHHHHHC-----CCEEEEEEHHHHH
Confidence 56779999999999888776655443 2455544433333
No 186
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=51.06 E-value=38 Score=26.25 Aligned_cols=38 Identities=16% Similarity=0.045 Sum_probs=28.2
Q ss_pred eeeeCCCCCCHHHHHHHHHHHHHHhCCCCCCCCEEEEecCCc
Q psy2050 33 GILADEMGLGKTIQVISFLAYLHEAGLSRPKSPHLIIVPSST 74 (131)
Q Consensus 33 ~ilad~mGlGKT~~~ia~l~~~~~~~~~~~~~~~LIv~P~sl 74 (131)
.+++...|.|||.-++.++....... ..|++++....-
T Consensus 203 ~ii~G~pg~GKT~lal~ia~~~a~~~----g~~vl~~slE~~ 240 (444)
T 2q6t_A 203 NIIAARPAMGKTAFALTIAQNAALKE----GVGVGIYSLEMP 240 (444)
T ss_dssp EEEEECTTSCHHHHHHHHHHHHHHTT----CCCEEEEESSSC
T ss_pred EEEEeCCCCCHHHHHHHHHHHHHHhC----CCeEEEEECCCC
Confidence 57799999999999888876655432 367888776433
No 187
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=50.42 E-value=12 Score=27.38 Aligned_cols=36 Identities=17% Similarity=0.139 Sum_probs=23.9
Q ss_pred HHHHHHHhhcc--cCeeeeCCCCCCHHHHHHHHHHHHH
Q psy2050 20 LNWLAVMHNQQ--LCGILADEMGLGKTIQVISFLAYLH 55 (131)
Q Consensus 20 v~~l~~~~~~~--~g~ilad~mGlGKT~~~ia~l~~~~ 55 (131)
+..+......+ ..-++..+.|.|||..+-++...+.
T Consensus 46 ~~~l~~~l~~~~~~~~ll~G~~G~GKT~la~~la~~l~ 83 (353)
T 1sxj_D 46 VTVLKKTLKSANLPHMLFYGPPGTGKTSTILALTKELY 83 (353)
T ss_dssp HHHHHHHTTCTTCCCEEEECSTTSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCCEEEEECCCCCCHHHHHHHHHHHhC
Confidence 33334333344 3467799999999998888766553
No 188
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=49.70 E-value=26 Score=26.66 Aligned_cols=34 Identities=18% Similarity=0.137 Sum_probs=25.6
Q ss_pred eeeeCCCCCCHHHHHHHHHHHHHHhCCCCCCCCEEEEec
Q psy2050 33 GILADEMGLGKTIQVISFLAYLHEAGLSRPKSPHLIIVP 71 (131)
Q Consensus 33 ~ilad~mGlGKT~~~ia~l~~~~~~~~~~~~~~~LIv~P 71 (131)
.+++.+.|.|||.-++.++......+ .++++|..
T Consensus 66 i~I~G~pGsGKTtLal~la~~~~~~g-----~~vlyid~ 99 (356)
T 1u94_A 66 VEIYGPESSGKTTLTLQVIAAAQREG-----KTCAFIDA 99 (356)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHHHTT-----CCEEEEES
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCC-----CeEEEEeC
Confidence 46688999999999998887665542 56666665
No 189
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=49.69 E-value=7.1 Score=33.40 Aligned_cols=41 Identities=15% Similarity=0.091 Sum_probs=28.5
Q ss_pred cCeeeeCCCCCCHHHHHHHHHHHHHHhCCCCCCCCEEEEecCCchhhhh
Q psy2050 31 LCGILADEMGLGKTIQVISFLAYLHEAGLSRPKSPHLIIVPSSTLCKYK 79 (131)
Q Consensus 31 ~g~ilad~mGlGKT~~~ia~l~~~~~~~~~~~~~~~LIv~P~sl~~~W~ 79 (131)
+|.+|....|.|||+.|-++.... ..+++.+-.+.++..|.
T Consensus 512 ~gvLl~GPPGtGKT~lAkaiA~e~--------~~~f~~v~~~~l~s~~v 552 (806)
T 3cf2_A 512 KGVLFYGPPGCGKTLLAKAIANEC--------QANFISIKGPELLTMWF 552 (806)
T ss_dssp SCCEEESSTTSSHHHHHHHHHHTT--------TCEEEECCHHHHHTTTC
T ss_pred ceEEEecCCCCCchHHHHHHHHHh--------CCceEEeccchhhcccc
Confidence 366789999999999877665432 35566666666666663
No 190
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=49.54 E-value=35 Score=25.07 Aligned_cols=23 Identities=22% Similarity=0.211 Sum_probs=18.6
Q ss_pred eeeeCCCCCCHHHHHHHHHHHHH
Q psy2050 33 GILADEMGLGKTIQVISFLAYLH 55 (131)
Q Consensus 33 ~ilad~mGlGKT~~~ia~l~~~~ 55 (131)
-++..+-|.|||..+-++...+.
T Consensus 41 ~ll~G~~G~GKT~la~~la~~l~ 63 (373)
T 1jr3_A 41 YLFSGTRGVGKTSIARLLAKGLN 63 (373)
T ss_dssp EEEESCTTSSHHHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHHHhC
Confidence 47799999999998887765553
No 191
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=49.18 E-value=25 Score=26.45 Aligned_cols=25 Identities=12% Similarity=-0.065 Sum_probs=20.5
Q ss_pred eeeeCCCCCCHHHHHHHHHHHHHHh
Q psy2050 33 GILADEMGLGKTIQVISFLAYLHEA 57 (131)
Q Consensus 33 ~ilad~mGlGKT~~~ia~l~~~~~~ 57 (131)
-++....|.|||..+-+++..+...
T Consensus 48 lli~GpPGTGKT~~v~~v~~~L~~~ 72 (318)
T 3te6_A 48 FYITNADDSTKFQLVNDVMDELITS 72 (318)
T ss_dssp EEEECCCSHHHHHHHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHH
Confidence 4568999999999999988777553
No 192
>1ihu_A Arsenical pump-driving ATPase; aluminum fluoride, ADP, ARSA ATPase, ATP binding site, hydro; HET: ADP; 2.15A {Escherichia coli} SCOP: c.37.1.10 c.37.1.10 PDB: 1f48_A* 1ii0_A* 1ii9_A*
Probab=48.75 E-value=25 Score=28.29 Aligned_cols=34 Identities=24% Similarity=0.260 Sum_probs=25.1
Q ss_pred eeeeCCCCCCHHHHHHHHHHHHHHhCCCCCCCCEEEEec
Q psy2050 33 GILADEMGLGKTIQVISFLAYLHEAGLSRPKSPHLIIVP 71 (131)
Q Consensus 33 ~ilad~mGlGKT~~~ia~l~~~~~~~~~~~~~~~LIv~P 71 (131)
.+.+.--|-|||..+.++...+...+ .++|+|--
T Consensus 11 ~~~sgkGGvGKTT~a~~lA~~lA~~G-----~rVLlvd~ 44 (589)
T 1ihu_A 11 LFFTGKGGVGKTSISCATAIRLAEQG-----KRVLLVST 44 (589)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHHHTT-----CCEEEEEC
T ss_pred EEEeCCCcCHHHHHHHHHHHHHHHCC-----CcEEEEEC
Confidence 34456678999999999988887654 56776553
No 193
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=48.57 E-value=30 Score=25.41 Aligned_cols=23 Identities=13% Similarity=0.255 Sum_probs=17.5
Q ss_pred cccCeeeeCCCCCCHHHHHHHHH
Q psy2050 29 QQLCGILADEMGLGKTIQVISFL 51 (131)
Q Consensus 29 ~~~g~ilad~mGlGKT~~~ia~l 51 (131)
.....++..|.|.|||..+-++.
T Consensus 24 ~~~~vLi~Ge~GtGKt~lAr~i~ 46 (304)
T 1ojl_A 24 SDATVLIHGDSGTGKELVARALH 46 (304)
T ss_dssp TTSCEEEESCTTSCHHHHHHHHH
T ss_pred CCCcEEEECCCCchHHHHHHHHH
Confidence 33456779999999999776653
No 194
>3ez2_A Plasmid partition protein A; type IA, DNA binding, winged-HTH, DNA bindin; HET: ADP EPE; 2.05A {Escherichia coli} PDB: 3ez6_A* 3ez7_A
Probab=48.13 E-value=20 Score=27.26 Aligned_cols=23 Identities=22% Similarity=0.286 Sum_probs=17.8
Q ss_pred eeeCCCCCCHHHHHHHHHHHHHH
Q psy2050 34 ILADEMGLGKTIQVISFLAYLHE 56 (131)
Q Consensus 34 ilad~mGlGKT~~~ia~l~~~~~ 56 (131)
+.+--=|-|||..+..+...+..
T Consensus 113 v~s~KGGvGKTT~a~nLA~~La~ 135 (398)
T 3ez2_A 113 ISNLKGGVSKTVSTVSLAHAMRA 135 (398)
T ss_dssp ECCSSSSSSHHHHHHHHHHHHHH
T ss_pred EEeCCCCccHHHHHHHHHHHHHh
Confidence 44556679999999998877764
No 195
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=47.24 E-value=36 Score=26.46 Aligned_cols=36 Identities=17% Similarity=0.120 Sum_probs=27.3
Q ss_pred eeeeCCCCCCHHHHHHHHHHHHHHhCCCCCCCCEEEEecC
Q psy2050 33 GILADEMGLGKTIQVISFLAYLHEAGLSRPKSPHLIIVPS 72 (131)
Q Consensus 33 ~ilad~mGlGKT~~~ia~l~~~~~~~~~~~~~~~LIv~P~ 72 (131)
.+++...|.|||.-++.++....... ..+++++...
T Consensus 206 iiI~G~pG~GKTtl~l~ia~~~~~~~----g~~Vl~~s~E 241 (454)
T 2r6a_A 206 IIVAARPSVGKTAFALNIAQNVATKT----NENVAIFSLE 241 (454)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHHHHS----SCCEEEEESS
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHhC----CCcEEEEECC
Confidence 57799999999999988877665432 2578887764
No 196
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=47.23 E-value=60 Score=23.29 Aligned_cols=24 Identities=29% Similarity=0.156 Sum_probs=18.8
Q ss_pred cCeeeeCCCCCCHHHHHHHHHHHH
Q psy2050 31 LCGILADEMGLGKTIQVISFLAYL 54 (131)
Q Consensus 31 ~g~ilad~mGlGKT~~~ia~l~~~ 54 (131)
..-++..+.|.|||..+-++....
T Consensus 39 ~~vll~G~~GtGKT~la~~i~~~~ 62 (324)
T 1hqc_A 39 EHLLLFGPPGLGKTTLAHVIAHEL 62 (324)
T ss_dssp CCCEEECCTTCCCHHHHHHHHHHH
T ss_pred CcEEEECCCCCCHHHHHHHHHHHh
Confidence 456789999999999888765443
No 197
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=46.95 E-value=63 Score=23.45 Aligned_cols=20 Identities=25% Similarity=0.237 Sum_probs=16.8
Q ss_pred CeeeeCCCCCCHHHHHHHHH
Q psy2050 32 CGILADEMGLGKTIQVISFL 51 (131)
Q Consensus 32 g~ilad~mGlGKT~~~ia~l 51 (131)
.-+|..+.|.|||..+-++.
T Consensus 57 ~vll~G~~GtGKT~la~~ia 76 (338)
T 3pfi_A 57 HILFSGPAGLGKTTLANIIS 76 (338)
T ss_dssp CEEEECSTTSSHHHHHHHHH
T ss_pred eEEEECcCCCCHHHHHHHHH
Confidence 56779999999999887764
No 198
>3fkq_A NTRC-like two-domain protein; RER070207001320, structural GE joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: ATP 2PE; 2.10A {Eubacterium rectale}
Probab=46.69 E-value=30 Score=26.16 Aligned_cols=33 Identities=9% Similarity=0.028 Sum_probs=25.3
Q ss_pred eeeeCCCCCCHHHHHHHHHHHHHHhCCCCCCCCEEEEe
Q psy2050 33 GILADEMGLGKTIQVISFLAYLHEAGLSRPKSPHLIIV 70 (131)
Q Consensus 33 ~ilad~mGlGKT~~~ia~l~~~~~~~~~~~~~~~LIv~ 70 (131)
++.+---|.|||..|+.+...+...+ .++|+|-
T Consensus 147 av~s~KGGvGKTT~a~nLA~~La~~g-----~rVlliD 179 (373)
T 3fkq_A 147 IFTSPCGGVGTSTVAAACAIAHANMG-----KKVFYLN 179 (373)
T ss_dssp EEECSSTTSSHHHHHHHHHHHHHHHT-----CCEEEEE
T ss_pred EEECCCCCChHHHHHHHHHHHHHhCC-----CCEEEEE
Confidence 44566778999999999888877754 5677775
No 199
>3l0o_A Transcription termination factor RHO; helicase, RHO factor, RNA capture mechanism, ATP-binding, hydrolase, nucleotide-binding, RN binding; 2.35A {Thermotoga maritima}
Probab=45.08 E-value=47 Score=26.34 Aligned_cols=39 Identities=21% Similarity=0.121 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHhhcccCeeeeCCCCCCHHHHHHHHHHHH
Q psy2050 15 YQLVGLNWLAVMHNQQLCGILADEMGLGKTIQVISFLAYL 54 (131)
Q Consensus 15 ~Q~~~v~~l~~~~~~~~g~ilad~mGlGKT~~~ia~l~~~ 54 (131)
--..+++.|.-.-+.++.+|+++ -|.|||..+-.++...
T Consensus 161 tGiraID~l~PigrGQR~lIfg~-~g~GKT~Ll~~Ia~~i 199 (427)
T 3l0o_A 161 YSTRLIDLFAPIGKGQRGMIVAP-PKAGKTTILKEIANGI 199 (427)
T ss_dssp HHHHHHHHHSCCBTTCEEEEEEC-TTCCHHHHHHHHHHHH
T ss_pred ccchhhhhcccccCCceEEEecC-CCCChhHHHHHHHHHH
Confidence 34466666665444444566666 6999999885444333
No 200
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=44.81 E-value=59 Score=25.21 Aligned_cols=45 Identities=20% Similarity=0.146 Sum_probs=28.2
Q ss_pred CeeeeCCCCCCHHHHHHHHHHHHHHhCCCCCCCCEEEEecCCchhhhh
Q psy2050 32 CGILADEMGLGKTIQVISFLAYLHEAGLSRPKSPHLIIVPSSTLCKYK 79 (131)
Q Consensus 32 g~ilad~mGlGKT~~~ia~l~~~~~~~~~~~~~~~LIv~P~sl~~~W~ 79 (131)
.-+|..+.|+|||..+-++...+..... ..+++.+-.........
T Consensus 132 ~lll~Gp~G~GKTtLa~aia~~l~~~~~---~~~v~~v~~~~~~~~~~ 176 (440)
T 2z4s_A 132 PLFIYGGVGLGKTHLLQSIGNYVVQNEP---DLRVMYITSEKFLNDLV 176 (440)
T ss_dssp CEEEECSSSSSHHHHHHHHHHHHHHHCC---SSCEEEEEHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHHhCC---CCeEEEeeHHHHHHHHH
Confidence 4677999999999988877665554422 24455444433444443
No 201
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=44.50 E-value=32 Score=25.76 Aligned_cols=23 Identities=26% Similarity=0.280 Sum_probs=17.8
Q ss_pred CeeeeCCCCCCHHHHHHHHHHHH
Q psy2050 32 CGILADEMGLGKTIQVISFLAYL 54 (131)
Q Consensus 32 g~ilad~mGlGKT~~~ia~l~~~ 54 (131)
+-+|..++|.|||..+-++...+
T Consensus 74 ~ill~Gp~GtGKT~la~~la~~l 96 (376)
T 1um8_A 74 NILLIGPTGSGKTLMAQTLAKHL 96 (376)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHT
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 46779999999999887765433
No 202
>3igf_A ALL4481 protein; two-domained protein consisting of the N-terminal alpha-beta the C-terminal all beta domain., structural genomics; 2.00A {Nostoc SP}
Probab=43.68 E-value=14 Score=28.59 Aligned_cols=27 Identities=22% Similarity=0.245 Sum_probs=19.9
Q ss_pred CCCCHHHHHHHHHHHHHHhCCCCCCCCEEEEe
Q psy2050 39 MGLGKTIQVISFLAYLHEAGLSRPKSPHLIIV 70 (131)
Q Consensus 39 mGlGKT~~~ia~l~~~~~~~~~~~~~~~LIv~ 70 (131)
-|-|||..+.++...+...+ .++|+|-
T Consensus 11 GG~GKTt~a~~la~~la~~g-----~~vllvd 37 (374)
T 3igf_A 11 SGVARTKIAIAAAKLLASQG-----KRVLLAG 37 (374)
T ss_dssp BHHHHHHHHHHHHHHHHHTT-----CCEEEEE
T ss_pred CCCcHHHHHHHHHHHHHHCC-----CCeEEEe
Confidence 37899999999887777654 5566554
No 203
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=43.50 E-value=29 Score=27.23 Aligned_cols=25 Identities=24% Similarity=0.274 Sum_probs=20.0
Q ss_pred CeeeeCCCCCCHHHHHHHHHHHHHH
Q psy2050 32 CGILADEMGLGKTIQVISFLAYLHE 56 (131)
Q Consensus 32 g~ilad~mGlGKT~~~ia~l~~~~~ 56 (131)
+-+|..+.|.|||..+-++...+..
T Consensus 203 ~~LL~G~pG~GKT~la~~la~~l~~ 227 (468)
T 3pxg_A 203 NPVLIGEPGVGKTAIAEGLAQQIIN 227 (468)
T ss_dssp EEEEESCTTTTTHHHHHHHHHHHHS
T ss_pred CeEEECCCCCCHHHHHHHHHHHHHh
Confidence 4578999999999999887665543
No 204
>3cwq_A Para family chromosome partitioning protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: ADP; 2.47A {Synechocystis SP}
Probab=43.17 E-value=39 Score=23.09 Aligned_cols=30 Identities=30% Similarity=0.362 Sum_probs=21.4
Q ss_pred eeCCCCCCHHHHHHHHHHHHHHhCCCCCCCCEEEEe
Q psy2050 35 LADEMGLGKTIQVISFLAYLHEAGLSRPKSPHLIIV 70 (131)
Q Consensus 35 lad~mGlGKT~~~ia~l~~~~~~~~~~~~~~~LIv~ 70 (131)
.+.--|-|||..++.+...+... . ++|+|=
T Consensus 6 ~s~KGGvGKTT~a~~LA~~la~~-----g-~VlliD 35 (209)
T 3cwq_A 6 ASFKGGVGKTTTAVHLSAYLALQ-----G-ETLLID 35 (209)
T ss_dssp EESSTTSSHHHHHHHHHHHHHTT-----S-CEEEEE
T ss_pred EcCCCCCcHHHHHHHHHHHHHhc-----C-CEEEEE
Confidence 34456899999999988777643 3 677654
No 205
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=43.05 E-value=45 Score=24.51 Aligned_cols=21 Identities=19% Similarity=-0.075 Sum_probs=17.4
Q ss_pred eeeeCCCCCCHHHHHHHHHHH
Q psy2050 33 GILADEMGLGKTIQVISFLAY 53 (131)
Q Consensus 33 ~ilad~mGlGKT~~~ia~l~~ 53 (131)
-+|....|.|||.-+.|++..
T Consensus 107 ~~l~GppgtGKt~~a~ala~~ 127 (267)
T 1u0j_A 107 IWLFGPATTGKTNIAEAIAHT 127 (267)
T ss_dssp EEEECSTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHhh
Confidence 456899999999999987654
No 206
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=42.84 E-value=20 Score=28.25 Aligned_cols=37 Identities=8% Similarity=-0.118 Sum_probs=27.8
Q ss_pred eeeeCCCCCCHHHHHHHHHHHHHHhCCCCCCCCEEEEecCC
Q psy2050 33 GILADEMGLGKTIQVISFLAYLHEAGLSRPKSPHLIIVPSS 73 (131)
Q Consensus 33 ~ilad~mGlGKT~~~ia~l~~~~~~~~~~~~~~~LIv~P~s 73 (131)
.+++...|.|||.-++.++....... ..+++++.-.-
T Consensus 245 ~li~G~pG~GKT~lal~~a~~~a~~~----g~~vl~~s~E~ 281 (503)
T 1q57_A 245 IMVTSGSGMVMSTFVRQQALQWGTAM----GKKVGLAMLEE 281 (503)
T ss_dssp EEEEESSCHHHHHHHHHHHHHHTTTS----CCCEEEEESSS
T ss_pred EEEeecCCCCchHHHHHHHHHHHHhc----CCcEEEEeccC
Confidence 57799999999999998877665431 26788887643
No 207
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=42.36 E-value=31 Score=25.30 Aligned_cols=25 Identities=28% Similarity=0.228 Sum_probs=19.5
Q ss_pred CeeeeCCCCCCHHHHHHHHHHHHHH
Q psy2050 32 CGILADEMGLGKTIQVISFLAYLHE 56 (131)
Q Consensus 32 g~ilad~mGlGKT~~~ia~l~~~~~ 56 (131)
..++..+.|.|||..+-++......
T Consensus 46 ~vll~G~~G~GKT~l~~~~~~~~~~ 70 (387)
T 2v1u_A 46 NALLYGLTGTGKTAVARLVLRRLEA 70 (387)
T ss_dssp CEEECBCTTSSHHHHHHHHHHHHHH
T ss_pred cEEEECCCCCCHHHHHHHHHHHHHH
Confidence 4677999999999988877655543
No 208
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=41.69 E-value=27 Score=27.80 Aligned_cols=20 Identities=25% Similarity=0.194 Sum_probs=16.6
Q ss_pred CeeeeCCCCCCHHHHHHHHH
Q psy2050 32 CGILADEMGLGKTIQVISFL 51 (131)
Q Consensus 32 g~ilad~mGlGKT~~~ia~l 51 (131)
+-+|..+.|.|||..+-++.
T Consensus 240 ~vLL~GppGtGKT~lAraia 259 (489)
T 3hu3_A 240 GILLYGPPGTGKTLIARAVA 259 (489)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred cEEEECcCCCCHHHHHHHHH
Confidence 56779999999999887764
No 209
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=41.21 E-value=26 Score=27.28 Aligned_cols=40 Identities=20% Similarity=0.188 Sum_probs=22.9
Q ss_pred CeeeeCCCCCCHHHHHHHHHHHHHHhCCCCCCCCEEEEecCCchhhh
Q psy2050 32 CGILADEMGLGKTIQVISFLAYLHEAGLSRPKSPHLIIVPSSTLCKY 78 (131)
Q Consensus 32 g~ilad~mGlGKT~~~ia~l~~~~~~~~~~~~~~~LIv~P~sl~~~W 78 (131)
+-+|..+.|.|||..+-++...+ . ..+++.|....+...|
T Consensus 169 ~vLL~GppGtGKT~lA~aia~~~-----~--~~~~~~v~~~~l~~~~ 208 (444)
T 2zan_A 169 GILLFGPPGTGKSYLAKAVATEA-----N--NSTFFSISSSDLVSKW 208 (444)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHC-----C--SSEEEEECCC------
T ss_pred eEEEECCCCCCHHHHHHHHHHHc-----C--CCCEEEEeHHHHHhhh
Confidence 45779999999999888765433 1 2455555555555544
No 210
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=39.37 E-value=45 Score=26.38 Aligned_cols=23 Identities=26% Similarity=0.280 Sum_probs=18.2
Q ss_pred CeeeeCCCCCCHHHHHHHHHHHH
Q psy2050 32 CGILADEMGLGKTIQVISFLAYL 54 (131)
Q Consensus 32 g~ilad~mGlGKT~~~ia~l~~~ 54 (131)
+.+|..+.|.|||..+-++...+
T Consensus 79 ~lLL~GppGtGKTtla~~la~~l 101 (516)
T 1sxj_A 79 AAMLYGPPGIGKTTAAHLVAQEL 101 (516)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHc
Confidence 45779999999999888765443
No 211
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=38.90 E-value=55 Score=24.03 Aligned_cols=25 Identities=20% Similarity=0.264 Sum_probs=19.3
Q ss_pred CeeeeCCCCCCHHHHHHHHHHHHHH
Q psy2050 32 CGILADEMGLGKTIQVISFLAYLHE 56 (131)
Q Consensus 32 g~ilad~mGlGKT~~~ia~l~~~~~ 56 (131)
.-++..+.|.|||..+-++...+..
T Consensus 47 ~vll~G~~G~GKT~la~~l~~~~~~ 71 (384)
T 2qby_B 47 SNLFLGLTGTGKTFVSKYIFNEIEE 71 (384)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHHHH
T ss_pred cEEEECCCCCCHHHHHHHHHHHHHH
Confidence 3567899999999988877665543
No 212
>3ez9_A Para; DNA binding, winged-HTH, partition, biosynthetic protein; 2.80A {Salmonella enterica subsp} PDB: 3ezf_A
Probab=38.20 E-value=18 Score=27.60 Aligned_cols=22 Identities=18% Similarity=0.351 Sum_probs=10.2
Q ss_pred eeeCCCCCCHHHHHHHHHHHHH
Q psy2050 34 ILADEMGLGKTIQVISFLAYLH 55 (131)
Q Consensus 34 ilad~mGlGKT~~~ia~l~~~~ 55 (131)
+.+--=|.|||..+..+...+.
T Consensus 116 v~s~KGGvGKTT~a~nLA~~LA 137 (403)
T 3ez9_A 116 VVNLKGGVSKTVSTVTLAHALR 137 (403)
T ss_dssp ECCC--------CHHHHHHHHH
T ss_pred EEcCCCCchHHHHHHHHHHHHH
Confidence 3445567999999999887776
No 213
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=38.15 E-value=55 Score=24.68 Aligned_cols=35 Identities=20% Similarity=0.098 Sum_probs=24.6
Q ss_pred eeeeCCCCCCHHHHHHHHHHHHHHhCCCCCCCCEEEEecC
Q psy2050 33 GILADEMGLGKTIQVISFLAYLHEAGLSRPKSPHLIIVPS 72 (131)
Q Consensus 33 ~ilad~mGlGKT~~~ia~l~~~~~~~~~~~~~~~LIv~P~ 72 (131)
.++..+.|.|||.-++.++......+ .+++.+.-.
T Consensus 64 v~I~G~pGsGKTtLal~la~~~~~~g-----~~vlyi~~E 98 (349)
T 2zr9_A 64 IEIYGPESSGKTTVALHAVANAQAAG-----GIAAFIDAE 98 (349)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHHHTT-----CCEEEEESS
T ss_pred EEEECCCCCCHHHHHHHHHHHHHhCC-----CeEEEEECC
Confidence 46688899999999998876665432 455555543
No 214
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=37.83 E-value=43 Score=23.90 Aligned_cols=22 Identities=18% Similarity=0.388 Sum_probs=18.4
Q ss_pred eeeeCCCCCCHHHHHHHHHHHH
Q psy2050 33 GILADEMGLGKTIQVISFLAYL 54 (131)
Q Consensus 33 ~ilad~mGlGKT~~~ia~l~~~ 54 (131)
-++....|.|||.-+.+++..+
T Consensus 61 ili~GPPGtGKTt~a~ala~~l 82 (212)
T 1tue_A 61 LVFCGPANTGKSYFGMSFIHFI 82 (212)
T ss_dssp EEEESCGGGCHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 4559999999999998887655
No 215
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=37.76 E-value=40 Score=23.98 Aligned_cols=40 Identities=20% Similarity=0.128 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHhhccc--CeeeeCCCCCCHHHHHHHHHHHHH
Q psy2050 16 QLVGLNWLAVMHNQQL--CGILADEMGLGKTIQVISFLAYLH 55 (131)
Q Consensus 16 Q~~~v~~l~~~~~~~~--g~ilad~mGlGKT~~~ia~l~~~~ 55 (131)
|.+.+..+......+. .-++..+.|.|||..+-++...+.
T Consensus 22 ~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKt~la~~l~~~l~ 63 (319)
T 2chq_A 22 QDEVIQRLKGYVERKNIPHLLFSGPPGTGKTATAIALARDLF 63 (319)
T ss_dssp CHHHHHHHHTTTTTTCCCCEEEESSSSSSHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHhCCCCCeEEEECcCCcCHHHHHHHHHHHhc
Confidence 4444444444333333 457799999999998888766553
No 216
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=37.39 E-value=28 Score=24.11 Aligned_cols=22 Identities=27% Similarity=0.474 Sum_probs=17.1
Q ss_pred eeeeCCCCCCHHHHHHHHHHHH
Q psy2050 33 GILADEMGLGKTIQVISFLAYL 54 (131)
Q Consensus 33 ~ilad~mGlGKT~~~ia~l~~~ 54 (131)
.++-...|.|||..+++.+...
T Consensus 8 ~l~tG~pGsGKT~~a~~~~~~~ 29 (199)
T 2r2a_A 8 CLITGTPGSGKTLKMVSMMAND 29 (199)
T ss_dssp EEEECCTTSSHHHHHHHHHHHC
T ss_pred EEEEeCCCCCHHHHHHHHHHHH
Confidence 3567789999999998876544
No 217
>2obn_A Hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, unknown function; HET: PG4; 2.30A {Anabaena variabilis}
Probab=37.15 E-value=38 Score=25.97 Aligned_cols=27 Identities=15% Similarity=0.165 Sum_probs=22.5
Q ss_pred eeeeCCCCCCHHHHHHHHHHHHHHhCC
Q psy2050 33 GILADEMGLGKTIQVISFLAYLHEAGL 59 (131)
Q Consensus 33 ~ilad~mGlGKT~~~ia~l~~~~~~~~ 59 (131)
.+.+.++..|||.++.++...+.+.+.
T Consensus 156 ~v~GTD~~VGK~~ts~~L~~~l~~~G~ 182 (349)
T 2obn_A 156 LTVGTDMAIGKMSTSLELHWAAKLRGW 182 (349)
T ss_dssp EEEESSSSSSHHHHHHHHHHHHHHTTC
T ss_pred EEcCCCccccceeHHHHHHHHHHhcCC
Confidence 355889999999999998888877764
No 218
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=36.13 E-value=62 Score=25.53 Aligned_cols=24 Identities=17% Similarity=0.116 Sum_probs=18.2
Q ss_pred cCeeeeCCCCCCHHHHHHHHHHHH
Q psy2050 31 LCGILADEMGLGKTIQVISFLAYL 54 (131)
Q Consensus 31 ~g~ilad~mGlGKT~~~ia~l~~~ 54 (131)
.+-+|....|.|||..+-++...+
T Consensus 51 ~~iLl~GppGtGKT~lar~lA~~l 74 (444)
T 1g41_A 51 KNILMIGPTGVGKTEIARRLAKLA 74 (444)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHT
T ss_pred ceEEEEcCCCCCHHHHHHHHHHHc
Confidence 356779999999999887765433
No 219
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=36.07 E-value=69 Score=21.40 Aligned_cols=35 Identities=29% Similarity=0.347 Sum_probs=23.9
Q ss_pred eeeeCCCCCCHHHHHHHHHHHHHHhCCCCCCCCEEEEecC
Q psy2050 33 GILADEMGLGKTIQVISFLAYLHEAGLSRPKSPHLIIVPS 72 (131)
Q Consensus 33 ~ilad~mGlGKT~~~ia~l~~~~~~~~~~~~~~~LIv~P~ 72 (131)
.++..+-|.|||.-+..++...... .++++++...
T Consensus 26 ~~i~G~~GsGKTtl~~~l~~~~~~~-----~~~v~~~~~~ 60 (235)
T 2w0m_A 26 IALTGEPGTGKTIFSLHFIAKGLRD-----GDPCIYVTTE 60 (235)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHHHH-----TCCEEEEESS
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHC-----CCeEEEEEcc
Confidence 4568889999998888776555443 2566666543
No 220
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=36.01 E-value=61 Score=24.74 Aligned_cols=24 Identities=17% Similarity=0.030 Sum_probs=19.6
Q ss_pred eeeCCCCCCHHHHHHHHHHHHHHh
Q psy2050 34 ILADEMGLGKTIQVISFLAYLHEA 57 (131)
Q Consensus 34 ilad~mGlGKT~~~ia~l~~~~~~ 57 (131)
.++.+.|.|||.-++.+++.....
T Consensus 32 eI~G~pGsGKTtL~Lq~~~~~~~~ 55 (333)
T 3io5_A 32 ILAGPSKSFKSNFGLTMVSSYMRQ 55 (333)
T ss_dssp EEEESSSSSHHHHHHHHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHHHHHHhc
Confidence 458899999999999888776654
No 221
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=35.93 E-value=49 Score=26.28 Aligned_cols=36 Identities=22% Similarity=0.165 Sum_probs=24.0
Q ss_pred cCeeeeCCCCCCHHHHHHHHHHHHHHhCCCCCCCCEEEEecCCc
Q psy2050 31 LCGILADEMGLGKTIQVISFLAYLHEAGLSRPKSPHLIIVPSST 74 (131)
Q Consensus 31 ~g~ilad~mGlGKT~~~ia~l~~~~~~~~~~~~~~~LIv~P~sl 74 (131)
.|.+|..+.|.|||..+-++.... ..|++-+....+
T Consensus 50 ~gvLL~GppGtGKT~Laraia~~~--------~~~f~~is~~~~ 85 (476)
T 2ce7_A 50 KGILLVGPPGTGKTLLARAVAGEA--------NVPFFHISGSDF 85 (476)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHHH--------TCCEEEEEGGGT
T ss_pred CeEEEECCCCCCHHHHHHHHHHHc--------CCCeeeCCHHHH
Confidence 356779999999999887765433 355655544433
No 222
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=35.86 E-value=67 Score=22.81 Aligned_cols=24 Identities=29% Similarity=0.290 Sum_probs=19.1
Q ss_pred CeeeeCCCCCCHHHHHHHHHHHHH
Q psy2050 32 CGILADEMGLGKTIQVISFLAYLH 55 (131)
Q Consensus 32 g~ilad~mGlGKT~~~ia~l~~~~ 55 (131)
.-++..+.|.|||..+-++...+.
T Consensus 44 ~~ll~G~~G~GKt~la~~l~~~l~ 67 (323)
T 1sxj_B 44 HMIISGMPGIGKTTSVHCLAHELL 67 (323)
T ss_dssp CEEEECSTTSSHHHHHHHHHHHHH
T ss_pred eEEEECcCCCCHHHHHHHHHHHhc
Confidence 367799999999998888766553
No 223
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=35.68 E-value=85 Score=22.94 Aligned_cols=23 Identities=22% Similarity=0.293 Sum_probs=18.0
Q ss_pred CeeeeCCCCCCHHHHHHHHHHHH
Q psy2050 32 CGILADEMGLGKTIQVISFLAYL 54 (131)
Q Consensus 32 g~ilad~mGlGKT~~~ia~l~~~ 54 (131)
..++..+.|.|||..+-++....
T Consensus 46 ~~li~G~~G~GKTtl~~~l~~~~ 68 (389)
T 1fnn_A 46 RATLLGRPGTGKTVTLRKLWELY 68 (389)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHH
Confidence 35679999999999887766544
No 224
>1wx1_A Nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase; structural genomics; 1.97A {Thermus thermophilus HB8} PDB: 1j33_A
Probab=35.67 E-value=48 Score=25.32 Aligned_cols=28 Identities=25% Similarity=0.321 Sum_probs=23.0
Q ss_pred cccCeeeeCCCCCCHHHHHHHHHHHHHH
Q psy2050 29 QQLCGILADEMGLGKTIQVISFLAYLHE 56 (131)
Q Consensus 29 ~~~g~ilad~mGlGKT~~~ia~l~~~~~ 56 (131)
.+...+..-|||.|-|-++.+++..+..
T Consensus 153 ~g~~ll~~GEmGiGnTTtAaAv~~aL~G 180 (335)
T 1wx1_A 153 EGATLLAAGDMGIGNTTAAAALTAALLG 180 (335)
T ss_dssp TTCSEEEEEEECTTHHHHHHHHHHHHHT
T ss_pred CCCCEEEEeccccCccHHHHHHHHHHhC
Confidence 4556788899999999999999887743
No 225
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=35.36 E-value=89 Score=24.69 Aligned_cols=35 Identities=20% Similarity=0.080 Sum_probs=20.3
Q ss_pred HHHHHHHHHHhhcccCeeeeCCCCCCHHHHHHHHHH
Q psy2050 17 LVGLNWLAVMHNQQLCGILADEMGLGKTIQVISFLA 52 (131)
Q Consensus 17 ~~~v~~l~~~~~~~~g~ilad~mGlGKT~~~ia~l~ 52 (131)
..+++.+....+..+.+|++ .-|.|||..+-.+..
T Consensus 162 iraID~~~pi~rGQr~~IvG-~sG~GKTtLl~~Iar 196 (422)
T 3ice_A 162 ARVLDLASPIGRGQRGLIVA-PPKAGKTMLLQNIAQ 196 (422)
T ss_dssp HHHHHHHSCCBTTCEEEEEC-CSSSSHHHHHHHHHH
T ss_pred ceeeeeeeeecCCcEEEEec-CCCCChhHHHHHHHH
Confidence 35555555444333344544 569999998755433
No 226
>3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase; 1.90A {Tomato mosaic virus}
Probab=35.27 E-value=16 Score=29.00 Aligned_cols=41 Identities=22% Similarity=0.286 Sum_probs=30.4
Q ss_pred eeeeCCCCCCHHHHHHHHHHHHHHhCCCCCCCCEEEEecC-Cchhhhhh-hhc
Q psy2050 33 GILADEMGLGKTIQVISFLAYLHEAGLSRPKSPHLIIVPS-STLCKYKV-PSR 83 (131)
Q Consensus 33 ~ilad~mGlGKT~~~ia~l~~~~~~~~~~~~~~~LIv~P~-sl~~~W~~-~~~ 83 (131)
.++....|.|||-.....+. ..+.+|++|. .....|.+ +.+
T Consensus 164 ~~I~G~aGsGKTt~I~~~~~----------~~~~lVlTpT~~aa~~l~~kl~~ 206 (446)
T 3vkw_A 164 VLVDGVPGCGKTKEILSRVN----------FEEDLILVPGRQAAEMIRRRANA 206 (446)
T ss_dssp EEEEECTTSCHHHHHHHHCC----------TTTCEEEESCHHHHHHHHHHHTT
T ss_pred EEEEcCCCCCHHHHHHHHhc----------cCCeEEEeCCHHHHHHHHHHhhh
Confidence 45678899999997765431 2567999996 46778998 754
No 227
>1e9r_A Conjugal transfer protein TRWB; coupling protein, bacterial conjugation, F1-ATPase-like quaternary structure, ring helicases; 2.4A {Escherichia coli} SCOP: c.37.1.11 PDB: 1e9s_A 1gki_A* 1gl7_A* 1gl6_A*
Probab=34.75 E-value=61 Score=24.71 Aligned_cols=38 Identities=13% Similarity=0.114 Sum_probs=25.4
Q ss_pred cCeeeeCCCCCCHHHHHHHHHHHHHHhCCCCCCCCEEEEecCC
Q psy2050 31 LCGILADEMGLGKTIQVISFLAYLHEAGLSRPKSPHLIIVPSS 73 (131)
Q Consensus 31 ~g~ilad~mGlGKT~~~ia~l~~~~~~~~~~~~~~~LIv~P~s 73 (131)
.+.++....|.|||...-.++...... ..+++|+=|.-
T Consensus 54 ~h~~i~G~tGsGKs~~~~~li~~~~~~-----g~~viv~Dpkg 91 (437)
T 1e9r_A 54 RHLLVNGATGTGKSVLLRELAYTGLLR-----GDRMVIVDPNG 91 (437)
T ss_dssp GCEEEEECTTSSHHHHHHHHHHHHHHT-----TCEEEEEEETT
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHHC-----CCcEEEEeCCC
Confidence 456778889999999764455444443 35677777753
No 228
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=34.48 E-value=50 Score=26.74 Aligned_cols=37 Identities=22% Similarity=0.197 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHhhcccCeeeeCCCCCCHHHHHHHHHH
Q psy2050 16 QLVGLNWLAVMHNQQLCGILADEMGLGKTIQVISFLA 52 (131)
Q Consensus 16 Q~~~v~~l~~~~~~~~g~ilad~mGlGKT~~~ia~l~ 52 (131)
|...+.-+......+..-+|..+-|.|||..+-++..
T Consensus 46 ~~~~l~~l~~~i~~g~~vll~Gp~GtGKTtlar~ia~ 82 (604)
T 3k1j_A 46 QEHAVEVIKTAANQKRHVLLIGEPGTGKSMLGQAMAE 82 (604)
T ss_dssp CHHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHH
T ss_pred chhhHhhccccccCCCEEEEEeCCCCCHHHHHHHHhc
Confidence 3444554455555667778899999999998776654
No 229
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=34.15 E-value=91 Score=30.50 Aligned_cols=47 Identities=28% Similarity=0.286 Sum_probs=31.9
Q ss_pred CCCCcchHHHHHHHHHHHHhhcccCeeeeCCCCCCHHHHHHHHHHHH
Q psy2050 8 RNLKLAGYQLVGLNWLAVMHNQQLCGILADEMGLGKTIQVISFLAYL 54 (131)
Q Consensus 8 ~~~~L~~~Q~~~v~~l~~~~~~~~g~ilad~mGlGKT~~~ia~l~~~ 54 (131)
.+.-.-|.=.+...-+......+.||.+..+.|.|||-.+-++...+
T Consensus 623 ~rlViTPltdr~~~tl~~Al~~~~~~~l~GpaGtGKTe~vk~LA~~l 669 (2695)
T 4akg_A 623 ERLIYTPLLLIGFATLTDSLHQKYGGCFFGPAGTGKTETVKAFGQNL 669 (2695)
T ss_dssp CCCCCCHHHHHHHHHHHHHHHTTCEEEEECCTTSCHHHHHHHHHHTT
T ss_pred CcceecHHHHHHHHHHHHHHHhCCCCcccCCCCCCcHHHHHHHHHHh
Confidence 34444554444544555555677899999999999999877665443
No 230
>4hdr_B ARSB; transferase; HET: DMD; 1.45A {Sporomusa ovata} PDB: 4hdm_B 4hdn_B 4hdk_B* 4hds_B
Probab=33.34 E-value=55 Score=25.17 Aligned_cols=28 Identities=29% Similarity=0.306 Sum_probs=22.8
Q ss_pred cccCeeeeCCCCCCHHHHHHHHHHHHHH
Q psy2050 29 QQLCGILADEMGLGKTIQVISFLAYLHE 56 (131)
Q Consensus 29 ~~~g~ilad~mGlGKT~~~ia~l~~~~~ 56 (131)
.+...+...|||.|-|..+-++++.+..
T Consensus 162 ~G~~ll~~GEMGIGNTT~AaAl~aal~g 189 (350)
T 4hdr_B 162 RGCQVIGLGEMGLGGLAAAMAIVACCHG 189 (350)
T ss_dssp TTCSEEEEEEESTTHHHHHHHHHHHHHC
T ss_pred cCCCEEEecccCCCcchHHHHHHHHhcC
Confidence 4556777899999999999998877654
No 231
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=33.21 E-value=71 Score=24.94 Aligned_cols=31 Identities=29% Similarity=0.335 Sum_probs=23.1
Q ss_pred eCCCCCCHHHHHHHHHHHHHHh-CCCCCCCCEEEEec
Q psy2050 36 ADEMGLGKTIQVISFLAYLHEA-GLSRPKSPHLIIVP 71 (131)
Q Consensus 36 ad~mGlGKT~~~ia~l~~~~~~-~~~~~~~~~LIv~P 71 (131)
+.--|.|||-.+..+...+... + .++++|.-
T Consensus 106 vG~~GvGKTT~a~~LA~~l~~~~G-----~kVllvd~ 137 (433)
T 2xxa_A 106 AGLQGAGKTTSVGKLGKFLREKHK-----KKVLVVSA 137 (433)
T ss_dssp ECSTTSSHHHHHHHHHHHHHHTSC-----CCEEEEEC
T ss_pred ECCCCCCHHHHHHHHHHHHHHhcC-----CeEEEEec
Confidence 4567999999999988887765 4 45666554
No 232
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=33.01 E-value=68 Score=26.62 Aligned_cols=23 Identities=22% Similarity=0.225 Sum_probs=18.7
Q ss_pred eeeeCCCCCCHHHHHHHHHHHHH
Q psy2050 33 GILADEMGLGKTIQVISFLAYLH 55 (131)
Q Consensus 33 ~ilad~mGlGKT~~~ia~l~~~~ 55 (131)
-++..+.|.|||..+-++...+.
T Consensus 524 ~Ll~Gp~GtGKT~lA~ala~~l~ 546 (758)
T 3pxi_A 524 FIFLGPTGVGKTELARALAESIF 546 (758)
T ss_dssp EEEESCTTSSHHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHhc
Confidence 56799999999999988766553
No 233
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=32.96 E-value=31 Score=30.51 Aligned_cols=50 Identities=14% Similarity=0.195 Sum_probs=34.9
Q ss_pred eeeCCCCCCHHHHHHHHHHHHHHhCCCCCCCCEEEEecCC-chhhhhh-hhcccCCCceee
Q psy2050 34 ILADEMGLGKTIQVISFLAYLHEAGLSRPKSPHLIIVPSS-TLCKYKV-PSRWRTSNCDKT 92 (131)
Q Consensus 34 ilad~mGlGKT~~~ia~l~~~~~~~~~~~~~~~LIv~P~s-l~~~W~~-~~~~~p~~~v~~ 92 (131)
.+..-.|.||+..+.+++. .. .+|+|||||.. ...+|.+ ++.|. +..|..
T Consensus 21 ~l~G~~gs~ka~~~a~l~~----~~----~~p~lvv~~~~~~A~~l~~el~~f~-~~~V~~ 72 (1151)
T 2eyq_A 21 LLGELTGAACATLVAEIAE----RH----AGPVVLIAPDMQNALRLHDEISQFT-DQMVMN 72 (1151)
T ss_dssp CBCCCCTTHHHHHHHHHHH----SS----SSEEEEEESSHHHHHHHHHHHGGGC-SSCEEE
T ss_pred EEeCCchHHHHHHHHHHHH----hh----CCCEEEEeCCHHHHHHHHHHHHhhc-CCcEEE
Confidence 4455678899987665432 11 36899999965 5788999 99887 545554
No 234
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=32.64 E-value=38 Score=25.03 Aligned_cols=38 Identities=11% Similarity=-0.063 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHhhccc--CeeeeCCCCCCHHHHHHHHHHH
Q psy2050 16 QLVGLNWLAVMHNQQL--CGILADEMGLGKTIQVISFLAY 53 (131)
Q Consensus 16 Q~~~v~~l~~~~~~~~--g~ilad~mGlGKT~~~ia~l~~ 53 (131)
|.+.+..+....+.+. .-++..+.|.|||-.+.++...
T Consensus 2 ~~~~~~~L~~~i~~~~~~~~Lf~Gp~G~GKtt~a~~la~~ 41 (305)
T 2gno_A 2 AKDQLETLKRIIEKSEGISILINGEDLSYPREVSLELPEY 41 (305)
T ss_dssp --CHHHHHHHHHHTCSSEEEEEECSSSSHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHCCCCcEEEEECCCCCCHHHHHHHHHHh
Confidence 4555555555444444 4577999999999988877653
No 235
>4hdr_A ARSA; transferase; HET: DMD; 1.45A {Sporomusa ovata} PDB: 4hdm_A 4hdn_A 4hdk_A* 4hds_A
Probab=32.04 E-value=46 Score=25.60 Aligned_cols=28 Identities=18% Similarity=0.239 Sum_probs=22.2
Q ss_pred cccCeeeeCCCCCCHHHHHHHHHHHHHH
Q psy2050 29 QQLCGILADEMGLGKTIQVISFLAYLHE 56 (131)
Q Consensus 29 ~~~g~ilad~mGlGKT~~~ia~l~~~~~ 56 (131)
.+...+...|||.|-|..+-++++.+..
T Consensus 169 ~G~~ll~~GEMGIGNTT~AaAl~aal~g 196 (348)
T 4hdr_A 169 HGNRCFCLGEMGIGNTTSSATIVGAFTG 196 (348)
T ss_dssp TTEEEEEEEEECTTHHHHHHHHHHHHHC
T ss_pred cCCCEEEecccCCCcHHHHHHHHHHHhC
Confidence 3445677899999999999998877653
No 236
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=31.70 E-value=92 Score=20.36 Aligned_cols=23 Identities=26% Similarity=0.265 Sum_probs=17.1
Q ss_pred eeeCCCCCCHHHHHHHHHHHHHH
Q psy2050 34 ILADEMGLGKTIQVISFLAYLHE 56 (131)
Q Consensus 34 ilad~mGlGKT~~~ia~l~~~~~ 56 (131)
++...+|.|||-.+-.+...+..
T Consensus 17 ~l~G~~GsGKsT~~~~L~~~l~~ 39 (186)
T 2yvu_A 17 WLTGLPGSGKTTIATRLADLLQK 39 (186)
T ss_dssp EEECCTTSSHHHHHHHHHHHHHH
T ss_pred EEEcCCCCCHHHHHHHHHHHHHh
Confidence 55788999999988776555443
No 237
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=31.30 E-value=81 Score=24.01 Aligned_cols=34 Identities=18% Similarity=0.151 Sum_probs=23.5
Q ss_pred eeeCCCCCCHHHHHHHHHHHHHHhCCCCCCCCEEEEecC
Q psy2050 34 ILADEMGLGKTIQVISFLAYLHEAGLSRPKSPHLIIVPS 72 (131)
Q Consensus 34 ilad~mGlGKT~~~ia~l~~~~~~~~~~~~~~~LIv~P~ 72 (131)
++.-+.|.|||.-++.++......+ ++++.|...
T Consensus 65 ~I~GppGsGKSTLal~la~~~~~~g-----g~VlyId~E 98 (356)
T 3hr8_A 65 EIFGQESSGKTTLALHAIAEAQKMG-----GVAAFIDAE 98 (356)
T ss_dssp EEEESTTSSHHHHHHHHHHHHHHTT-----CCEEEEESS
T ss_pred EEECCCCCCHHHHHHHHHHHHHhcC-----CeEEEEecc
Confidence 4577899999998888876655432 455555553
No 238
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=31.24 E-value=57 Score=27.09 Aligned_cols=24 Identities=25% Similarity=0.272 Sum_probs=19.6
Q ss_pred CeeeeCCCCCCHHHHHHHHHHHHH
Q psy2050 32 CGILADEMGLGKTIQVISFLAYLH 55 (131)
Q Consensus 32 g~ilad~mGlGKT~~~ia~l~~~~ 55 (131)
+-+|..+.|.|||..+-++...+.
T Consensus 203 ~vLL~G~pGtGKT~la~~la~~l~ 226 (758)
T 3pxi_A 203 NPVLIGEPGVGKTAIAEGLAQQII 226 (758)
T ss_dssp EEEEESCTTTTTHHHHHHHHHHHH
T ss_pred CeEEECCCCCCHHHHHHHHHHHHh
Confidence 567899999999999888766553
No 239
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=31.14 E-value=86 Score=23.16 Aligned_cols=43 Identities=14% Similarity=0.019 Sum_probs=26.0
Q ss_pred chHHHHHHHHHH-HHhhcc-----cCeee--eCCCCCCHHHHHHHHHHHHH
Q psy2050 13 AGYQLVGLNWLA-VMHNQQ-----LCGIL--ADEMGLGKTIQVISFLAYLH 55 (131)
Q Consensus 13 ~~~Q~~~v~~l~-~~~~~~-----~g~il--ad~mGlGKT~~~ia~l~~~~ 55 (131)
|+.+.+.+.-.+ .....+ ...++ ..+.|.|||..+-.+.....
T Consensus 27 R~~el~~l~~~l~~~~~~~~~~~~~~~li~i~G~~G~GKT~L~~~~~~~~~ 77 (412)
T 1w5s_A 27 RRGEAEALARIYLNRLLSGAGLSDVNMIYGSIGRVGIGKTTLAKFTVKRVS 77 (412)
T ss_dssp SCHHHHHHHHHHHHHHHTSSCBCCEEEEEECTTCCSSSHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhHHHhcCCCCCCCEEEEeCcCcCCCCHHHHHHHHHHHHH
Confidence 555665554333 322122 23566 78999999998887765543
No 240
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=31.08 E-value=79 Score=22.05 Aligned_cols=32 Identities=22% Similarity=0.122 Sum_probs=24.7
Q ss_pred eeeeCCCCCCHHHHHHHHHHHHHHhCCCCCCCCEEEE
Q psy2050 33 GILADEMGLGKTIQVISFLAYLHEAGLSRPKSPHLII 69 (131)
Q Consensus 33 ~ilad~mGlGKT~~~ia~l~~~~~~~~~~~~~~~LIv 69 (131)
-++-..-|-|||-.|+++.......+ .+++|+
T Consensus 31 i~v~tG~GkGKTTaA~GlalRA~g~G-----~rV~~v 62 (196)
T 1g5t_A 31 IIVFTGNGKGKTTAAFGTAARAVGHG-----KNVGVV 62 (196)
T ss_dssp EEEEESSSSCHHHHHHHHHHHHHHTT-----CCEEEE
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCC-----CeEEEE
Confidence 34577889999999999987776664 667776
No 241
>1ihu_A Arsenical pump-driving ATPase; aluminum fluoride, ADP, ARSA ATPase, ATP binding site, hydro; HET: ADP; 2.15A {Escherichia coli} SCOP: c.37.1.10 c.37.1.10 PDB: 1f48_A* 1ii0_A* 1ii9_A*
Probab=31.01 E-value=71 Score=25.61 Aligned_cols=32 Identities=22% Similarity=0.244 Sum_probs=24.5
Q ss_pred eeeeCCCCCCHHHHHHHHHHHHHHhCCCCCCCCEEEE
Q psy2050 33 GILADEMGLGKTIQVISFLAYLHEAGLSRPKSPHLII 69 (131)
Q Consensus 33 ~ilad~mGlGKT~~~ia~l~~~~~~~~~~~~~~~LIv 69 (131)
.+...--|.|||..+.++...+...+ .++++|
T Consensus 330 ~~~~~~~g~Gktt~a~~lA~~l~~~g-----~~vllv 361 (589)
T 1ihu_A 330 IMLMGKGGVGKTTMAAAIAVRLADMG-----FDVHLT 361 (589)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHHHTT-----CCEEEE
T ss_pred EEEecCCCCChhhHHHHHHHHHHHCC-----CcEEEE
Confidence 45577889999999999988887654 456665
No 242
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=30.46 E-value=1e+02 Score=23.09 Aligned_cols=39 Identities=21% Similarity=0.141 Sum_probs=26.6
Q ss_pred cccCeeeeCCCCCCHHHHHHHHHHHHHHhCCCCCCCCEEEEecC
Q psy2050 29 QQLCGILADEMGLGKTIQVISFLAYLHEAGLSRPKSPHLIIVPS 72 (131)
Q Consensus 29 ~~~g~ilad~mGlGKT~~~ia~l~~~~~~~~~~~~~~~LIv~P~ 72 (131)
.+...++....|.|||..+-.++...... ..+++|+=|.
T Consensus 34 ~~~~~~i~G~~G~GKs~~~~~~~~~~~~~-----~~~~~~~D~~ 72 (392)
T 4ag6_A 34 TNSNWTILAKPGAGKSFTAKMLLLREYMQ-----GSRVIIIDPE 72 (392)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHHHTT-----TCCEEEEESS
T ss_pred ccCceEEEcCCCCCHHHHHHHHHHHHHHC-----CCEEEEEeCC
Confidence 34567788899999998777666555432 2556666664
No 243
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=30.36 E-value=96 Score=23.81 Aligned_cols=20 Identities=25% Similarity=0.233 Sum_probs=15.7
Q ss_pred eeeeCCCCCCHHHHHHHHHH
Q psy2050 33 GILADEMGLGKTIQVISFLA 52 (131)
Q Consensus 33 ~ilad~mGlGKT~~~ia~l~ 52 (131)
-+|...||.|||..+-++..
T Consensus 27 i~l~G~~G~GKTTl~~~la~ 46 (359)
T 2ga8_A 27 VILVGSPGSGKSTIAEELCQ 46 (359)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHHH
Confidence 56788999999988766543
No 244
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=29.99 E-value=77 Score=21.90 Aligned_cols=32 Identities=22% Similarity=0.213 Sum_probs=23.4
Q ss_pred eeeeCCCCCCHHHHHHHHHHHHHHhCCCCCCCCEEEEe
Q psy2050 33 GILADEMGLGKTIQVISFLAYLHEAGLSRPKSPHLIIV 70 (131)
Q Consensus 33 ~ilad~mGlGKT~~~ia~l~~~~~~~~~~~~~~~LIv~ 70 (131)
.++..--|.|||-.+..+...+. .+ .++++|-
T Consensus 17 ~~~~GkgGvGKTTl~~~La~~l~-~g-----~~v~vvd 48 (262)
T 1yrb_A 17 VVFVGTAGSGKTTLTGEFGRYLE-DN-----YKVAYVN 48 (262)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHT-TT-----SCEEEEE
T ss_pred EEEeCCCCCCHHHHHHHHHHHHH-CC-----CeEEEEe
Confidence 35577889999999988877665 43 5666665
No 245
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=29.98 E-value=48 Score=21.66 Aligned_cols=19 Identities=32% Similarity=0.176 Sum_probs=15.2
Q ss_pred eeeeCCCCCCHHHHHHHHH
Q psy2050 33 GILADEMGLGKTIQVISFL 51 (131)
Q Consensus 33 ~ilad~mGlGKT~~~ia~l 51 (131)
-++..-+|.|||-.+-.+.
T Consensus 8 i~l~G~~GsGKst~a~~La 26 (185)
T 3trf_A 8 IYLIGLMGAGKTSVGSQLA 26 (185)
T ss_dssp EEEECSTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 4567889999998887764
No 246
>2pa8_L DNA-directed RNA polymerase subunit L; ferredoxin-like Fe-S binding motif, platform for RNA polymer assembly, transferase; 1.76A {Sulfolobus solfataricus} PDB: 2pmz_L 3hkz_L 2waq_L 2wb1_L 2y0s_L
Probab=29.54 E-value=24 Score=21.64 Aligned_cols=13 Identities=15% Similarity=-0.049 Sum_probs=11.6
Q ss_pred CCcEEEEccccCC
Q psy2050 119 GYNDIIMYLNIPH 131 (131)
Q Consensus 119 ~~~VvIttY~~~~ 131 (131)
..+|...+|.+||
T Consensus 35 ~p~V~fagY~vpH 47 (92)
T 2pa8_L 35 ISGVSFASYYQPH 47 (92)
T ss_dssp STTEEEEEEECSS
T ss_pred CCCeeEEEeecCC
Confidence 4689999999999
No 247
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=28.49 E-value=1.3e+02 Score=19.93 Aligned_cols=32 Identities=9% Similarity=-0.069 Sum_probs=22.5
Q ss_pred eeeeCCCCCCHHHHHHHHHHHHHHhCCCCCCCCEEEEecC
Q psy2050 33 GILADEMGLGKTIQVISFLAYLHEAGLSRPKSPHLIIVPS 72 (131)
Q Consensus 33 ~ilad~mGlGKT~~~ia~l~~~~~~~~~~~~~~~LIv~P~ 72 (131)
.++..+-|.|||.-+..++. .. ..+++.+.-.
T Consensus 23 ~~i~G~~GsGKTtl~~~l~~---~~-----~~~v~~i~~~ 54 (220)
T 2cvh_A 23 TQVYGPYASGKTTLALQTGL---LS-----GKKVAYVDTE 54 (220)
T ss_dssp EEEECSTTSSHHHHHHHHHH---HH-----CSEEEEEESS
T ss_pred EEEECCCCCCHHHHHHHHHH---Hc-----CCcEEEEECC
Confidence 56788999999998887765 22 3566666543
No 248
>1l5o_A COBT, nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase, NN:DBI PRT; cobalamin synthetic enzyme; HET: NCN; 1.60A {Salmonella enterica} SCOP: c.39.1.1 PDB: 1jha_A* 1jhm_A* 1jho_A* 1jhp_A* 1jhq_A* 1jhr_A* 1jhu_A 1jhv_A 1jhx_A 1jhy_A 1jh8_A 1l4e_A* 1l4f_A* 1l4g_A* 1l4h_A* 1l4k_A* 1l4l_A* 1l4m_A* 1l4n_A 1l5f_A ...
Probab=28.40 E-value=52 Score=25.33 Aligned_cols=27 Identities=11% Similarity=0.230 Sum_probs=22.0
Q ss_pred cccCeeeeCCCCCCHHHHHHHHHHHHH
Q psy2050 29 QQLCGILADEMGLGKTIQVISFLAYLH 55 (131)
Q Consensus 29 ~~~g~ilad~mGlGKT~~~ia~l~~~~ 55 (131)
.+...+..-|||.|-|-++.+++..+.
T Consensus 165 ~g~~lL~~GEmGiGnTTtAaAv~~aL~ 191 (356)
T 1l5o_A 165 RGVTLFGVGELGMANTTPAAAMVSVFT 191 (356)
T ss_dssp TTEEEEEEEEECTTTHHHHHHHHHHHH
T ss_pred CCCCEEEEeccccCccHHHHHHHHHHh
Confidence 344567789999999999999988774
No 249
>2g0t_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 2.67A {Thermotoga maritima} SCOP: c.37.1.10
Probab=28.39 E-value=65 Score=24.64 Aligned_cols=26 Identities=15% Similarity=0.351 Sum_probs=21.7
Q ss_pred eeeCCCCCCHHHHHHHHHHHHHHhCC
Q psy2050 34 ILADEMGLGKTIQVISFLAYLHEAGL 59 (131)
Q Consensus 34 ilad~mGlGKT~~~ia~l~~~~~~~~ 59 (131)
+.+.+++.|||.++..+...+.+.+.
T Consensus 174 v~GTDt~vGKt~t~~~L~~~l~~~G~ 199 (350)
T 2g0t_A 174 VFGTDCVVGKRTTAVQLWERALEKGI 199 (350)
T ss_dssp EEESSSSSSHHHHHHHHHHHHHHTTC
T ss_pred EecCCCCccCccHHHHHHHHHHhcCC
Confidence 55888999999999998888877764
No 250
>3sqn_A Conserved domain protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MGA family; 2.31A {Enterococcus faecalis}
Probab=28.34 E-value=89 Score=24.70 Aligned_cols=57 Identities=5% Similarity=-0.036 Sum_probs=32.1
Q ss_pred CCCCCEEEEecCCc-hhhhh-h-hhcccCCCceeeccCCCcchhhhhhcCccCCCCCCCCCCCcEEEEccccC
Q psy2050 61 RPKSPHLIIVPSST-LCKYK-V-PSRWRTSNCDKTSPVKPQTITVAQLRVPECDQSPSQEVGYNDIIMYLNIP 130 (131)
Q Consensus 61 ~~~~~~LIv~P~sl-~~~W~-~-~~~~~p~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~VvIttY~~~ 130 (131)
..+.+++||||.-+ ..+=- + +++.+|..-+.... ... ++..-...++|+||+|-.++
T Consensus 396 ~~~~~~~vVC~~GigtS~lL~~~L~~~F~~~~~~~~i-s~~------------e~~~~~~~~~D~ViStvpl~ 455 (485)
T 3sqn_A 396 AQTMTAYFLFQGEPAWKAFLQQELAAYLGTRVKLQAI-EYV------------ELSQLTLNEADIIISNFPLD 455 (485)
T ss_dssp CCSEEEEEECCSCHHHHHHHHHHHHHHHCTTEEEEEC-CTT------------TCCCCCCCTTCEEEESSCCC
T ss_pred cccceEEEECCCchhHHHHHHHHHHHhcCCceEeecc-cHH------------HHhhccccCCCEEEEccccC
Confidence 34678899999754 33433 3 88888875443322 111 11111112589999997664
No 251
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=28.28 E-value=53 Score=23.84 Aligned_cols=24 Identities=25% Similarity=0.263 Sum_probs=18.5
Q ss_pred cCeeeeCCCCCCHHHHHHHHHHHH
Q psy2050 31 LCGILADEMGLGKTIQVISFLAYL 54 (131)
Q Consensus 31 ~g~ilad~mGlGKT~~~ia~l~~~ 54 (131)
.+-+|..+.|.|||..+-++...+
T Consensus 46 ~~vLl~G~~GtGKT~la~~la~~~ 69 (350)
T 1g8p_A 46 GGVLVFGDRGTGKSTAVRALAALL 69 (350)
T ss_dssp CCEEEECCGGGCTTHHHHHHHHHS
T ss_pred ceEEEECCCCccHHHHHHHHHHhC
Confidence 356779999999999887765543
No 252
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=28.05 E-value=72 Score=25.51 Aligned_cols=33 Identities=21% Similarity=0.335 Sum_probs=21.7
Q ss_pred HHHHHHHHhhcccCeeeeCCCCCCHHHHHHHHH
Q psy2050 19 GLNWLAVMHNQQLCGILADEMGLGKTIQVISFL 51 (131)
Q Consensus 19 ~v~~l~~~~~~~~g~ilad~mGlGKT~~~ia~l 51 (131)
++..+......+..-++....|.|||-..-+++
T Consensus 249 ~l~~l~~~v~~g~~i~I~GptGSGKTTlL~aL~ 281 (511)
T 2oap_1 249 VLAYLWLAIEHKFSAIVVGETASGKTTTLNAIM 281 (511)
T ss_dssp HHHHHHHHHHTTCCEEEEESTTSSHHHHHHHHG
T ss_pred HHHHHHHHHhCCCEEEEECCCCCCHHHHHHHHH
Confidence 344444444466667778999999997655543
No 253
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=27.70 E-value=89 Score=23.19 Aligned_cols=31 Identities=26% Similarity=0.280 Sum_probs=21.1
Q ss_pred eCCCCCCHHHHHHHHHHHHHHhCCCCCCCCEEEEec
Q psy2050 36 ADEMGLGKTIQVISFLAYLHEAGLSRPKSPHLIIVP 71 (131)
Q Consensus 36 ad~mGlGKT~~~ia~l~~~~~~~~~~~~~~~LIv~P 71 (131)
...-|.|||-.+..+...+... .++++++.-
T Consensus 111 vG~~G~GKTT~~~~LA~~l~~~-----g~kVllid~ 141 (320)
T 1zu4_A 111 VGVNGTGKTTSLAKMANYYAEL-----GYKVLIAAA 141 (320)
T ss_dssp ESSTTSSHHHHHHHHHHHHHHT-----TCCEEEEEC
T ss_pred ECCCCCCHHHHHHHHHHHHHHC-----CCeEEEEeC
Confidence 4469999998888776666543 256666643
No 254
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=27.53 E-value=1.4e+02 Score=23.38 Aligned_cols=48 Identities=15% Similarity=0.148 Sum_probs=28.7
Q ss_pred eeeCCCCCCHHHHHHHHHHHHHHhCCCCCCCCEEEE-ecCCchhhhhhhhcccC
Q psy2050 34 ILADEMGLGKTIQVISFLAYLHEAGLSRPKSPHLII-VPSSTLCKYKVPSRWRT 86 (131)
Q Consensus 34 ilad~mGlGKT~~~ia~l~~~~~~~~~~~~~~~LIv-~P~sl~~~W~~~~~~~p 86 (131)
+++..-|.|||-.+..+...+...+ .+++++ +...-...+.++..|..
T Consensus 101 ~lvG~~GsGKTTt~~kLA~~l~~~G-----~kVllv~~D~~r~~a~eqL~~~~~ 149 (433)
T 3kl4_A 101 MLVGVQGSGKTTTAGKLAYFYKKRG-----YKVGLVAADVYRPAAYDQLLQLGN 149 (433)
T ss_dssp EECCCTTSCHHHHHHHHHHHHHHTT-----CCEEEEEECCSCHHHHHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHHHHHHHcC-----CeEEEEecCccchhHHHHHHHHHH
Confidence 4466789999998888777666543 445544 44444333333444443
No 255
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=27.44 E-value=81 Score=23.18 Aligned_cols=24 Identities=33% Similarity=0.235 Sum_probs=17.9
Q ss_pred cCeeeeCCCCCCHHHHHHHHHHHH
Q psy2050 31 LCGILADEMGLGKTIQVISFLAYL 54 (131)
Q Consensus 31 ~g~ilad~mGlGKT~~~ia~l~~~ 54 (131)
...+|....|.|||..+-++...+
T Consensus 52 ~~~ll~Gp~G~GKTTLa~~ia~~l 75 (334)
T 1in4_A 52 DHVLLAGPPGLGKTTLAHIIASEL 75 (334)
T ss_dssp CCEEEESSTTSSHHHHHHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHHHHHHh
Confidence 346789999999998777665443
No 256
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=27.30 E-value=70 Score=27.05 Aligned_cols=23 Identities=26% Similarity=0.270 Sum_probs=18.3
Q ss_pred eeeeCCCCCCHHHHHHHHHHHHH
Q psy2050 33 GILADEMGLGKTIQVISFLAYLH 55 (131)
Q Consensus 33 ~ilad~mGlGKT~~~ia~l~~~~ 55 (131)
-++..+.|.|||..+-++...+.
T Consensus 591 vLl~Gp~GtGKT~lA~~la~~~~ 613 (854)
T 1qvr_A 591 FLFLGPTGVGKTELAKTLAATLF 613 (854)
T ss_dssp EEEBSCSSSSHHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHhc
Confidence 46799999999998887765554
No 257
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=27.04 E-value=62 Score=23.52 Aligned_cols=25 Identities=32% Similarity=0.270 Sum_probs=19.3
Q ss_pred CeeeeCCCCCCHHHHHHHHHHHHHH
Q psy2050 32 CGILADEMGLGKTIQVISFLAYLHE 56 (131)
Q Consensus 32 g~ilad~mGlGKT~~~ia~l~~~~~ 56 (131)
..++..+-|.|||..+-++......
T Consensus 47 ~vli~G~~G~GKTtl~~~l~~~~~~ 71 (386)
T 2qby_A 47 NIFIYGLTGTGKTAVVKFVLSKLHK 71 (386)
T ss_dssp CEEEEECTTSSHHHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHH
Confidence 4577899999999988877655544
No 258
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=26.90 E-value=59 Score=21.78 Aligned_cols=21 Identities=33% Similarity=0.309 Sum_probs=16.3
Q ss_pred cCeeeeCCCCCCHHHHHHHHH
Q psy2050 31 LCGILADEMGLGKTIQVISFL 51 (131)
Q Consensus 31 ~g~ilad~mGlGKT~~~ia~l 51 (131)
..-+|...+|.|||-.+-.+.
T Consensus 26 ~~i~l~G~~GsGKsTl~~~La 46 (199)
T 3vaa_A 26 VRIFLTGYMGAGKTTLGKAFA 46 (199)
T ss_dssp CEEEEECCTTSCHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHH
Confidence 345678899999998877664
No 259
>2ck3_A ATP synthase subunit alpha\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1bmf_A* 1e1q_A* 1e1r_A* 1e79_A* 1h8h_A* 1nbm_A* 1ohh_A* 1qo1_A 1w0j_A* 1w0k_A* 1h8e_A* 2jdi_A* 2wss_A* 2w6j_A 2w6e_A 2w6g_A 2w6f_A 2w6h_A 2w6i_A 1cow_A* ...
Probab=26.11 E-value=48 Score=26.83 Aligned_cols=38 Identities=21% Similarity=0.128 Sum_probs=25.9
Q ss_pred HHHHHHHHHhhcccCeeeeCCCCCCHHHHHHHHHHHHHH
Q psy2050 18 VGLNWLAVMHNQQLCGILADEMGLGKTIQVISFLAYLHE 56 (131)
Q Consensus 18 ~~v~~l~~~~~~~~g~ilad~mGlGKT~~~ia~l~~~~~ 56 (131)
.+++-|.-.-+.++.+|+++ -|.|||..++..|.....
T Consensus 151 raID~l~PigrGQR~~I~g~-~g~GKT~Lal~~I~~q~~ 188 (510)
T 2ck3_A 151 KAVDSLVPIGRGQRELIIGD-RQTGKTSIAIDTIINQKR 188 (510)
T ss_dssp HHHHHHSCCBTTCBCEEEES-TTSSHHHHHHHHHHHTHH
T ss_pred eeeccccccccCCEEEEecC-CCCCchHHHHHHHHHHHh
Confidence 55666655444455566666 799999998877765554
No 260
>4a0g_A Adenosylmethionine-8-amino-7-oxononanoate aminotransferase; BIO3-BIO1, biotin synthesis; HET: PLP; 2.50A {Arabidopsis thaliana} PDB: 4a0h_A* 4a0r_A* 4a0f_A*
Probab=25.38 E-value=55 Score=27.90 Aligned_cols=24 Identities=25% Similarity=0.260 Sum_probs=21.0
Q ss_pred eeeCCCCCCHHHHHHHHHHHHHHh
Q psy2050 34 ILADEMGLGKTIQVISFLAYLHEA 57 (131)
Q Consensus 34 ilad~mGlGKT~~~ia~l~~~~~~ 57 (131)
|.+.+.|.|||+.+.+++..+.+.
T Consensus 39 I~gt~s~vGKT~vt~gL~r~l~~~ 62 (831)
T 4a0g_A 39 IWSANTSLGKTLVSTGIAASFLLQ 62 (831)
T ss_dssp EEESSSSSCHHHHHHHHHHHHHSC
T ss_pred EEECCCCCCHHHHHHHHHHHHHhc
Confidence 558899999999999998888776
No 261
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=25.25 E-value=93 Score=25.70 Aligned_cols=25 Identities=24% Similarity=0.262 Sum_probs=19.9
Q ss_pred CeeeeCCCCCCHHHHHHHHHHHHHH
Q psy2050 32 CGILADEMGLGKTIQVISFLAYLHE 56 (131)
Q Consensus 32 g~ilad~mGlGKT~~~ia~l~~~~~ 56 (131)
+-+|..+.|.|||..+-++...+..
T Consensus 209 ~vlL~G~~GtGKT~la~~la~~l~~ 233 (758)
T 1r6b_X 209 NPLLVGESGVGKTAIAEGLAWRIVQ 233 (758)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred CeEEEcCCCCCHHHHHHHHHHHHHh
Confidence 4577999999999998887765543
No 262
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=24.85 E-value=63 Score=26.73 Aligned_cols=22 Identities=27% Similarity=0.336 Sum_probs=17.6
Q ss_pred eeeeCCCCCCHHHHHHHHHHHH
Q psy2050 33 GILADEMGLGKTIQVISFLAYL 54 (131)
Q Consensus 33 ~ilad~mGlGKT~~~ia~l~~~ 54 (131)
-++..+.|.|||..+-++...+
T Consensus 491 ~ll~G~~GtGKT~la~~la~~l 512 (758)
T 1r6b_X 491 FLFAGPTGVGKTEVTVQLSKAL 512 (758)
T ss_dssp EEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHHHHh
Confidence 4679999999999888765544
No 263
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=24.77 E-value=96 Score=29.54 Aligned_cols=42 Identities=14% Similarity=0.035 Sum_probs=30.7
Q ss_pred eeeeCCCCCCHHHHHHHHHHHHHHhCCCCCCCCEEEEecCCchhhhh
Q psy2050 33 GILADEMGLGKTIQVISFLAYLHEAGLSRPKSPHLIIVPSSTLCKYK 79 (131)
Q Consensus 33 ~ilad~mGlGKT~~~ia~l~~~~~~~~~~~~~~~LIv~P~sl~~~W~ 79 (131)
-+++-+.|.|||.-++.++...... ..+++.+.-.....||.
T Consensus 735 ilIaG~PG~GKTtLalqlA~~~a~~-----g~~VlyiS~Ees~~ql~ 776 (2050)
T 3cmu_A 735 VEIYGPESSGKTTLTLQVIAAAQRE-----GKTCAFIDAEHALDPIY 776 (2050)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHHTT-----TCCEEEECTTSCCCHHH
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHhc-----CCcEEEEECCCcHHHHH
Confidence 4779999999999999887665543 35677777666666653
No 264
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=24.64 E-value=66 Score=25.15 Aligned_cols=21 Identities=29% Similarity=0.148 Sum_probs=16.8
Q ss_pred CeeeeCCCCCCHHHHHHHHHH
Q psy2050 32 CGILADEMGLGKTIQVISFLA 52 (131)
Q Consensus 32 g~ilad~mGlGKT~~~ia~l~ 52 (131)
.-+|..+.|.|||..+-++..
T Consensus 52 ~vLL~GppGtGKTtlAr~ia~ 72 (447)
T 3pvs_A 52 SMILWGPPGTGKTTLAEVIAR 72 (447)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHH
Confidence 457899999999998776544
No 265
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=24.37 E-value=1e+02 Score=22.07 Aligned_cols=20 Identities=30% Similarity=0.297 Sum_probs=15.9
Q ss_pred CeeeeCCCCCCHHHHHHHHH
Q psy2050 32 CGILADEMGLGKTIQVISFL 51 (131)
Q Consensus 32 g~ilad~mGlGKT~~~ia~l 51 (131)
|.+|....|.|||..+-++.
T Consensus 46 GvlL~Gp~GtGKTtLakala 65 (274)
T 2x8a_A 46 GVLLAGPPGCGKTLLAKAVA 65 (274)
T ss_dssp EEEEESSTTSCHHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHH
Confidence 56779999999998776654
No 266
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=24.36 E-value=70 Score=20.79 Aligned_cols=20 Identities=25% Similarity=0.215 Sum_probs=15.8
Q ss_pred CeeeeCCCCCCHHHHHHHHH
Q psy2050 32 CGILADEMGLGKTIQVISFL 51 (131)
Q Consensus 32 g~ilad~mGlGKT~~~ia~l 51 (131)
.-++..-+|.|||-.+-.+.
T Consensus 13 ~i~i~G~~GsGKst~~~~l~ 32 (180)
T 3iij_A 13 NILLTGTPGVGKTTLGKELA 32 (180)
T ss_dssp CEEEECSTTSSHHHHHHHHH
T ss_pred eEEEEeCCCCCHHHHHHHHH
Confidence 35678899999999877654
No 267
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=24.23 E-value=72 Score=20.67 Aligned_cols=21 Identities=19% Similarity=0.260 Sum_probs=15.7
Q ss_pred eeeCCCCCCHHHHHHHHHHHH
Q psy2050 34 ILADEMGLGKTIQVISFLAYL 54 (131)
Q Consensus 34 ilad~mGlGKT~~~ia~l~~~ 54 (131)
++...+|.|||-++-.+...+
T Consensus 7 ~i~G~~GsGKsT~~~~L~~~l 27 (192)
T 1kht_A 7 VVTGVPGVGSTTSSQLAMDNL 27 (192)
T ss_dssp EEECCTTSCHHHHHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHHHHH
Confidence 567789999998877655434
No 268
>3u4g_A NAMN:DMB phosphoribosyltransferase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 1.90A {Pyrococcus horikoshii}
Probab=24.14 E-value=76 Score=24.24 Aligned_cols=26 Identities=23% Similarity=0.125 Sum_probs=21.4
Q ss_pred cccCeeeeCCCCCCHHHHHHHHHHHH
Q psy2050 29 QQLCGILADEMGLGKTIQVISFLAYL 54 (131)
Q Consensus 29 ~~~g~ilad~mGlGKT~~~ia~l~~~ 54 (131)
.+...+..-|||.|-|-++.+++..+
T Consensus 133 ~~~dll~~GEmGIGNTTtAaAvl~aL 158 (337)
T 3u4g_A 133 KIANEIVIGESTPGGTTTAQAILWAL 158 (337)
T ss_dssp TTBSEEEEEEECTTHHHHHHHHHHHT
T ss_pred cCCCEEEEeCcchHHHHHHHHHHHHh
Confidence 33456778999999999999998875
No 269
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=24.09 E-value=73 Score=20.23 Aligned_cols=18 Identities=17% Similarity=-0.038 Sum_probs=13.7
Q ss_pred eeeCCCCCCHHHHHHHHH
Q psy2050 34 ILADEMGLGKTIQVISFL 51 (131)
Q Consensus 34 ilad~mGlGKT~~~ia~l 51 (131)
++..-+|.|||-.+-.+.
T Consensus 5 ~l~G~~GsGKsT~~~~L~ 22 (173)
T 3kb2_A 5 ILEGPDCCFKSTVAAKLS 22 (173)
T ss_dssp EEECSSSSSHHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHH
Confidence 457789999998776654
No 270
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=23.85 E-value=55 Score=20.66 Aligned_cols=17 Identities=18% Similarity=0.204 Sum_probs=13.0
Q ss_pred eeeCCCCCCHHHHHHHH
Q psy2050 34 ILADEMGLGKTIQVISF 50 (131)
Q Consensus 34 ilad~mGlGKT~~~ia~ 50 (131)
++..-+|.|||-.+-.+
T Consensus 5 ~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 5 LITGMPGSGKSEFAKLL 21 (179)
T ss_dssp EEECCTTSCHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHH
Confidence 45778999999877654
No 271
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=23.83 E-value=66 Score=23.65 Aligned_cols=39 Identities=18% Similarity=0.119 Sum_probs=25.1
Q ss_pred eeeeCCCCCCHHHHHHHHHHHHHHh---CCCCCCCCEEEEecCC
Q psy2050 33 GILADEMGLGKTIQVISFLAYLHEA---GLSRPKSPHLIIVPSS 73 (131)
Q Consensus 33 ~ilad~mGlGKT~~~ia~l~~~~~~---~~~~~~~~~LIv~P~s 73 (131)
.+++.+.|.|||.-++.++...... +.. ..+++.+.-..
T Consensus 110 ~~i~G~~GsGKT~la~~la~~~~~~~~~gg~--~~~vlyi~~e~ 151 (324)
T 2z43_A 110 TEFFGEFGSGKTQLCHQLSVNVQLPPEKGGL--SGKAVYIDTEG 151 (324)
T ss_dssp EEEEESTTSSHHHHHHHHHHHTTSCGGGTCC--SCEEEEEESSS
T ss_pred EEEECCCCCCHhHHHHHHHHHHhcccccCCC--CCeEEEEECCC
Confidence 4678899999999988876543221 000 25677776643
No 272
>1xpp_A TA1416, DNA-directed RNA polymerase subunit L; structural genomics, protein structure initiative, MCSG; 1.60A {Thermoplasma acidophilum} SCOP: d.74.3.2
Probab=23.50 E-value=35 Score=21.93 Aligned_cols=13 Identities=15% Similarity=-0.148 Sum_probs=11.7
Q ss_pred CCcEEEEccccCC
Q psy2050 119 GYNDIIMYLNIPH 131 (131)
Q Consensus 119 ~~~VvIttY~~~~ 131 (131)
..+|...+|.+||
T Consensus 45 dp~V~fAgY~vpH 57 (115)
T 1xpp_A 45 DDQVDEARYYIKH 57 (115)
T ss_dssp CTTEEEEEEECSS
T ss_pred CCCeEEEEeecCC
Confidence 4689999999999
No 273
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=23.34 E-value=2.1e+02 Score=28.16 Aligned_cols=59 Identities=17% Similarity=0.029 Sum_probs=34.5
Q ss_pred hHHHHHHHHHHHHhhcccCeeeeCCCCCCHHHHHHHHHHHHHHhCCCCCCCCEEEEecCCc
Q psy2050 14 GYQLVGLNWLAVMHNQQLCGILADEMGLGKTIQVISFLAYLHEAGLSRPKSPHLIIVPSST 74 (131)
Q Consensus 14 ~~Q~~~v~~l~~~~~~~~g~ilad~mGlGKT~~~ia~l~~~~~~~~~~~~~~~LIv~P~sl 74 (131)
+++..-+--+......+.|-+|..+.|.|||...=.+..++...... ....-++-|.++
T Consensus 907 ~~~~~K~~ql~e~~~~r~gvmlvGptgsGKTt~~~~La~al~~l~~~--~~~~~~inpk~~ 965 (2695)
T 4akg_A 907 EEFLKKCMQFYYMQKTQQALILVGKAGCGKTATWKTVIDAMAIFDGH--ANVVYVIDTKVL 965 (2695)
T ss_dssp HHHHHHHHHHHHHHHHCSEEEEECSTTSSHHHHHHHHHHHHHHHTCC--EEEEEEECTTTS
T ss_pred HHHHHHHHHHHHHHHhcceEEEECCCCCCHHHHHHHHHHHHHHhcCC--CceEEEeCCCCC
Confidence 33333333334444456677889999999998766665544332211 234456777755
No 274
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=23.17 E-value=67 Score=20.95 Aligned_cols=18 Identities=22% Similarity=0.239 Sum_probs=13.9
Q ss_pred eeeCCCCCCHHHHHHHHH
Q psy2050 34 ILADEMGLGKTIQVISFL 51 (131)
Q Consensus 34 ilad~mGlGKT~~~ia~l 51 (131)
++..-+|.|||-.+-.+.
T Consensus 9 ~l~G~~GsGKST~~~~L~ 26 (193)
T 2rhm_A 9 IVTGHPATGKTTLSQALA 26 (193)
T ss_dssp EEEESTTSSHHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHH
Confidence 567789999998776553
No 275
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=23.17 E-value=80 Score=20.23 Aligned_cols=19 Identities=26% Similarity=0.191 Sum_probs=14.6
Q ss_pred eeeeCCCCCCHHHHHHHHH
Q psy2050 33 GILADEMGLGKTIQVISFL 51 (131)
Q Consensus 33 ~ilad~mGlGKT~~~ia~l 51 (131)
-+|...+|.|||-++-.+.
T Consensus 10 i~l~G~~GsGKSTva~~La 28 (168)
T 1zuh_A 10 LVLIGFMGSGKSSLAQELG 28 (168)
T ss_dssp EEEESCTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 4567889999998776553
No 276
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=22.94 E-value=1.3e+02 Score=24.03 Aligned_cols=32 Identities=22% Similarity=0.298 Sum_probs=23.3
Q ss_pred eeCCCCCCHHHHHHHHHHHHHHhCCCCCCCCEEEEec
Q psy2050 35 LADEMGLGKTIQVISFLAYLHEAGLSRPKSPHLIIVP 71 (131)
Q Consensus 35 lad~mGlGKT~~~ia~l~~~~~~~~~~~~~~~LIv~P 71 (131)
++.--|.|||-.+..++..+...+ .++++|..
T Consensus 106 ivG~~GvGKTTl~~kLA~~l~~~G-----~kVllVd~ 137 (504)
T 2j37_W 106 FVGLQGSGKTTTCSKLAYYYQRKG-----WKTCLICA 137 (504)
T ss_dssp EECSTTSSHHHHHHHHHHHHHHTT-----CCEEEEEE
T ss_pred EECCCCCCHHHHHHHHHHHHHhCC-----CeEEEEec
Confidence 345579999999998887776543 55666665
No 277
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=22.92 E-value=1.7e+02 Score=20.09 Aligned_cols=20 Identities=25% Similarity=0.225 Sum_probs=15.9
Q ss_pred CeeeeCCCCCCHHHHHHHHH
Q psy2050 32 CGILADEMGLGKTIQVISFL 51 (131)
Q Consensus 32 g~ilad~mGlGKT~~~ia~l 51 (131)
|-+|..+.|.|||..+-++.
T Consensus 51 g~ll~G~~G~GKTtl~~~i~ 70 (254)
T 1ixz_A 51 GVLLVGPPGVGKTHLARAVA 70 (254)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHH
Confidence 45779999999998776654
No 278
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=22.57 E-value=31 Score=29.50 Aligned_cols=39 Identities=18% Similarity=0.125 Sum_probs=24.8
Q ss_pred CeeeeCCCCCCHHHHHHHHHHHHHHhCCCCCCCCEEEEecCCchhhh
Q psy2050 32 CGILADEMGLGKTIQVISFLAYLHEAGLSRPKSPHLIIVPSSTLCKY 78 (131)
Q Consensus 32 g~ilad~mGlGKT~~~ia~l~~~~~~~~~~~~~~~LIv~P~sl~~~W 78 (131)
|-+|-...|.|||..+=++...+ ..+++.|-...++..|
T Consensus 240 GILL~GPPGTGKT~LAraiA~el--------g~~~~~v~~~~l~sk~ 278 (806)
T 3cf2_A 240 GILLYGPPGTGKTLIARAVANET--------GAFFFLINGPEIMSKL 278 (806)
T ss_dssp EEEEECCTTSCHHHHHHHHHTTT--------TCEEEEEEHHHHHSSC
T ss_pred eEEEECCCCCCHHHHHHHHHHHh--------CCeEEEEEhHHhhccc
Confidence 55779999999999877654322 3455555444454444
No 279
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=22.22 E-value=76 Score=24.78 Aligned_cols=32 Identities=25% Similarity=0.392 Sum_probs=22.7
Q ss_pred eeCCCCCCHHHHHHHHHHHHHHhCCCCCCCCEEEEec
Q psy2050 35 LADEMGLGKTIQVISFLAYLHEAGLSRPKSPHLIIVP 71 (131)
Q Consensus 35 lad~mGlGKT~~~ia~l~~~~~~~~~~~~~~~LIv~P 71 (131)
+....|.|||-.+..+...+...+ .++++|..
T Consensus 104 ivG~~GvGKTTla~~La~~l~~~G-----~kVllv~~ 135 (432)
T 2v3c_C 104 LVGIQGSGKTTTAAKLARYIQKRG-----LKPALIAA 135 (432)
T ss_dssp EECCSSSSTTHHHHHHHHHHHHHH-----CCEEEECC
T ss_pred EECCCCCCHHHHHHHHHHHHHHcC-----CeEEEEec
Confidence 455689999999988877776553 45565543
No 280
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=21.94 E-value=2.4e+02 Score=22.38 Aligned_cols=21 Identities=24% Similarity=0.222 Sum_probs=16.6
Q ss_pred CeeeeCCCCCCHHHHHHHHHH
Q psy2050 32 CGILADEMGLGKTIQVISFLA 52 (131)
Q Consensus 32 g~ilad~mGlGKT~~~ia~l~ 52 (131)
|-+|..+.|.|||..+-++..
T Consensus 66 GvLL~GppGtGKTtLaraIa~ 86 (499)
T 2dhr_A 66 GVLLVGPPGVGKTHLARAVAG 86 (499)
T ss_dssp EEEEECSSSSSHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 567799999999997776543
No 281
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=21.77 E-value=1.3e+02 Score=21.41 Aligned_cols=36 Identities=17% Similarity=0.060 Sum_probs=22.5
Q ss_pred chHHHHHHHHHHHHhhcccCeeeeCCCCCCHHHHHHHHH
Q psy2050 13 AGYQLVGLNWLAVMHNQQLCGILADEMGLGKTIQVISFL 51 (131)
Q Consensus 13 ~~~Q~~~v~~l~~~~~~~~g~ilad~mGlGKT~~~ia~l 51 (131)
|+.+.+.+.-.. ..+...++..+-|.|||.-+-.++
T Consensus 17 R~~el~~L~~~l---~~~~~v~i~G~~G~GKT~Ll~~~~ 52 (350)
T 2qen_A 17 REEESRKLEESL---ENYPLTLLLGIRRVGKSSLLRAFL 52 (350)
T ss_dssp CHHHHHHHHHHH---HHCSEEEEECCTTSSHHHHHHHHH
T ss_pred hHHHHHHHHHHH---hcCCeEEEECCCcCCHHHHHHHHH
Confidence 444444443322 234456779999999998776654
No 282
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=21.67 E-value=86 Score=20.53 Aligned_cols=20 Identities=15% Similarity=0.174 Sum_probs=14.5
Q ss_pred eeeCCCCCCHHHHHHHHHHH
Q psy2050 34 ILADEMGLGKTIQVISFLAY 53 (131)
Q Consensus 34 ilad~mGlGKT~~~ia~l~~ 53 (131)
++...+|.|||-.+-.+...
T Consensus 4 ~i~G~~GsGKsT~~~~L~~~ 23 (205)
T 2jaq_A 4 AIFGTVGAGKSTISAEISKK 23 (205)
T ss_dssp EEECCTTSCHHHHHHHHHHH
T ss_pred EEECCCccCHHHHHHHHHHh
Confidence 35667999999877765443
No 283
>3nwn_A Kinesin-like protein KIF9; motor domain, ADP, structural genomics, structural consortium, SGC, contractIle protein; HET: ADP; 2.00A {Homo sapiens}
Probab=21.50 E-value=87 Score=23.93 Aligned_cols=21 Identities=24% Similarity=0.381 Sum_probs=15.8
Q ss_pred ccc-CeeeeC-CCCCCHHHHHHH
Q psy2050 29 QQL-CGILAD-EMGLGKTIQVIS 49 (131)
Q Consensus 29 ~~~-g~ilad-~mGlGKT~~~ia 49 (131)
.+. ++|+|. ..|.|||.+...
T Consensus 102 ~G~N~tifAYGQTGSGKTyTM~G 124 (359)
T 3nwn_A 102 DGYNGTIMCYGQTGAGKTYTMMG 124 (359)
T ss_dssp TTCCEEEEEEESTTSSHHHHHTB
T ss_pred CCCCEEEEEeCCCCCCccEEeCC
Confidence 455 677765 899999998753
No 284
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=21.39 E-value=1.7e+02 Score=21.51 Aligned_cols=32 Identities=16% Similarity=0.240 Sum_probs=20.8
Q ss_pred eeCCCCCCHHHHHHHHHHHHHHhCCCCCCCCEEEEec
Q psy2050 35 LADEMGLGKTIQVISFLAYLHEAGLSRPKSPHLIIVP 71 (131)
Q Consensus 35 lad~mGlGKT~~~ia~l~~~~~~~~~~~~~~~LIv~P 71 (131)
+...-|.|||-.+..+...+...+ ++++++.-
T Consensus 109 ivG~~GsGKTTl~~~LA~~l~~~g-----~kV~lv~~ 140 (306)
T 1vma_A 109 VVGVNGTGKTTSCGKLAKMFVDEG-----KSVVLAAA 140 (306)
T ss_dssp EECCTTSSHHHHHHHHHHHHHHTT-----CCEEEEEE
T ss_pred EEcCCCChHHHHHHHHHHHHHhcC-----CEEEEEcc
Confidence 345699999988877665555432 45655543
No 285
>2owm_A Nckin3-434, related to kinesin-like protein KIF1C; motor domain, ADP, NECK linker, motor PR; HET: ADP; 3.25A {Neurospora crassa}
Probab=21.27 E-value=1.1e+02 Score=24.22 Aligned_cols=20 Identities=25% Similarity=0.403 Sum_probs=15.3
Q ss_pred ccc-CeeeeC-CCCCCHHHHHH
Q psy2050 29 QQL-CGILAD-EMGLGKTIQVI 48 (131)
Q Consensus 29 ~~~-g~ilad-~mGlGKT~~~i 48 (131)
.+. ++|+|. ..|.|||.++.
T Consensus 134 ~GyN~tIfAYGQTGSGKTyTM~ 155 (443)
T 2owm_A 134 EGYHTCIFAYGQTGSGKSYTMM 155 (443)
T ss_dssp TTCCEEEEEESSTTSSHHHHHT
T ss_pred cCCceEEEEeCCCCCCCCEEee
Confidence 444 678865 78999999885
No 286
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=21.26 E-value=64 Score=21.30 Aligned_cols=19 Identities=21% Similarity=0.176 Sum_probs=14.7
Q ss_pred eeeeCCCCCCHHHHHHHHH
Q psy2050 33 GILADEMGLGKTIQVISFL 51 (131)
Q Consensus 33 ~ilad~mGlGKT~~~ia~l 51 (131)
-+|..-+|.|||-.+-.+.
T Consensus 13 I~l~G~~GsGKSTv~~~La 31 (184)
T 1y63_A 13 ILITGTPGTGKTSMAEMIA 31 (184)
T ss_dssp EEEECSTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 4678889999998776553
No 287
>3dc4_A Kinesin-like protein NOD; catalytic domain, ATPase, microtubule, ADP, nucleotide-binding protein, ATP-binding, coiled coil, motor protein; HET: ADP; 1.90A {Drosophila melanogaster} PDB: 3dcb_A* 3dco_N* 3pxn_A*
Probab=21.25 E-value=89 Score=23.71 Aligned_cols=19 Identities=32% Similarity=0.522 Sum_probs=14.3
Q ss_pred cccCeeee-CCCCCCHHHHH
Q psy2050 29 QQLCGILA-DEMGLGKTIQV 47 (131)
Q Consensus 29 ~~~g~ila-d~mGlGKT~~~ 47 (131)
...++|+| ...|.|||.+.
T Consensus 93 G~N~tifAYGQTGSGKTyTM 112 (344)
T 3dc4_A 93 GFQCTALAYGQTGTGKSYSM 112 (344)
T ss_dssp TCCEEEEEESSTTSSHHHHH
T ss_pred CCceEEEEecCCCCCCCeEE
Confidence 33467776 47899999987
No 288
>3gbj_A KIF13B protein; kinesin, motor domain, ADP, structural genomics, structural genomics consortium, SGC, ATP-binding, microtubule, motor protein; HET: ADP; 2.10A {Homo sapiens} SCOP: c.37.1.9
Probab=21.21 E-value=1.1e+02 Score=23.21 Aligned_cols=20 Identities=25% Similarity=0.454 Sum_probs=15.2
Q ss_pred ccc-Ceeee-CCCCCCHHHHHH
Q psy2050 29 QQL-CGILA-DEMGLGKTIQVI 48 (131)
Q Consensus 29 ~~~-g~ila-d~mGlGKT~~~i 48 (131)
.+. ++|+| ...|.|||.+..
T Consensus 90 ~G~n~tifAYGqTGSGKTyTm~ 111 (354)
T 3gbj_A 90 DGYNACIFAYGQTGSGKSYTMM 111 (354)
T ss_dssp TTCCEEEEEEECTTSSHHHHHT
T ss_pred CCceeEEEeeCCCCCCCceEEe
Confidence 454 66775 489999999974
No 289
>2qe7_A ATP synthase subunit alpha; blockage of ATP hydrolysis, F1-ATPase, single analysis, thermoalkaliphilic, hydrolase; 3.06A {Bacillus SP} PDB: 1sky_B
Probab=21.17 E-value=48 Score=26.79 Aligned_cols=36 Identities=19% Similarity=0.126 Sum_probs=23.0
Q ss_pred HHHHHHHHHhhcccCeeeeCCCCCCHHHHHHHHHHHH
Q psy2050 18 VGLNWLAVMHNQQLCGILADEMGLGKTIQVISFLAYL 54 (131)
Q Consensus 18 ~~v~~l~~~~~~~~g~ilad~mGlGKT~~~ia~l~~~ 54 (131)
.+++-|.-.-+.++.+|+++ -|.|||..++..|...
T Consensus 151 raID~l~PigrGQR~~Ifg~-~g~GKT~Lal~~I~~~ 186 (502)
T 2qe7_A 151 KAIDSMIPIGRGQRELIIGD-RQTGKTTIAIDTIINQ 186 (502)
T ss_dssp HHHHHSSCCBTTCBCEEEEC-SSSCHHHHHHHHHHGG
T ss_pred eecccccccccCCEEEEECC-CCCCchHHHHHHHHHh
Confidence 44555544444444566665 7999999888776544
No 290
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=21.02 E-value=60 Score=22.58 Aligned_cols=23 Identities=13% Similarity=0.375 Sum_probs=18.8
Q ss_pred ccCeeeeCCCCCCHHHHHHHHHH
Q psy2050 30 QLCGILADEMGLGKTIQVISFLA 52 (131)
Q Consensus 30 ~~g~ilad~mGlGKT~~~ia~l~ 52 (131)
+.|-++..+-|.||+-.|++++.
T Consensus 16 G~gvli~G~SGaGKStlal~L~~ 38 (181)
T 3tqf_A 16 KMGVLITGEANIGKSELSLALID 38 (181)
T ss_dssp TEEEEEEESSSSSHHHHHHHHHH
T ss_pred CEEEEEEcCCCCCHHHHHHHHHH
Confidence 34557788999999999998875
No 291
>1twf_K B13.6, DNA-directed RNA polymerase II 13.6 kDa polypepti; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: d.74.3.2 PDB: 1i3q_K 1i6h_K 1k83_K* 1nik_K 1nt9_K 1pqv_K 1r5u_K 1r9s_K* 1r9t_K* 1sfo_K* 1twa_K* 1twc_K* 1i50_K* 1twg_K* 1twh_K* 1wcm_K 1y1v_K 1y1w_K 1y1y_K 1y77_K* ...
Probab=21.02 E-value=43 Score=21.62 Aligned_cols=13 Identities=8% Similarity=0.169 Sum_probs=11.7
Q ss_pred CCcEEEEccccCC
Q psy2050 119 GYNDIIMYLNIPH 131 (131)
Q Consensus 119 ~~~VvIttY~~~~ 131 (131)
..+|...+|.+||
T Consensus 53 ~p~V~fAgY~vpH 65 (120)
T 1twf_K 53 DRKVLFAAYKVEH 65 (120)
T ss_dssp CTTEEEEEEECSC
T ss_pred CCCeeEEeeecCC
Confidence 4689999999999
No 292
>1x88_A Kinesin-like protein KIF11; switch II, motor domain, NECK linker, cell cycle; HET: ADP NAT; 1.80A {Homo sapiens} SCOP: c.37.1.9 PDB: 3hqd_A* 3ken_A* 2pg2_A* 1yrs_A* 2fme_A* 2g1q_A* 2gm1_A* 1ii6_A* 2uyi_A* 2uym_A* 2wog_A* 2x2r_A* 2x7c_A* 2x7d_A* 2x7e_A* 2xae_A* 3k3b_A* 3k5e_A* 3l9h_A* 1q0b_A* ...
Probab=20.96 E-value=1e+02 Score=23.45 Aligned_cols=21 Identities=33% Similarity=0.525 Sum_probs=15.6
Q ss_pred ccc-CeeeeC-CCCCCHHHHHHH
Q psy2050 29 QQL-CGILAD-EMGLGKTIQVIS 49 (131)
Q Consensus 29 ~~~-g~ilad-~mGlGKT~~~ia 49 (131)
.+. ++|+|. ..|.|||.++..
T Consensus 86 ~G~n~tifAYGqTGSGKTyTM~G 108 (359)
T 1x88_A 86 MGYNCTIFAYGQTGTGKTFTMEG 108 (359)
T ss_dssp TTCEEEEEEEECTTSSHHHHHTB
T ss_pred CCCceEEEEeCCCCCCCceEEec
Confidence 444 677755 789999998763
No 293
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=20.80 E-value=93 Score=20.10 Aligned_cols=19 Identities=21% Similarity=0.239 Sum_probs=14.7
Q ss_pred eeeeCCCCCCHHHHHHHHH
Q psy2050 33 GILADEMGLGKTIQVISFL 51 (131)
Q Consensus 33 ~ilad~mGlGKT~~~ia~l 51 (131)
-++...+|.|||-.+-.+.
T Consensus 7 i~i~G~~GsGKsTla~~La 25 (175)
T 1via_A 7 IVFIGFMGSGKSTLARALA 25 (175)
T ss_dssp EEEECCTTSCHHHHHHHHH
T ss_pred EEEEcCCCCCHHHHHHHHH
Confidence 4567889999998776654
No 294
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=20.78 E-value=78 Score=24.10 Aligned_cols=21 Identities=24% Similarity=0.082 Sum_probs=17.6
Q ss_pred eeeeCCCCCCHHHHHHHHHHH
Q psy2050 33 GILADEMGLGKTIQVISFLAY 53 (131)
Q Consensus 33 ~ilad~mGlGKT~~~ia~l~~ 53 (131)
-++..+.|.|||.-++.++..
T Consensus 126 iLI~GpPGsGKTtLAlqlA~~ 146 (331)
T 2vhj_A 126 VIVTGKGNSGKTPLVHALGEA 146 (331)
T ss_dssp EEEECSCSSSHHHHHHHHHHH
T ss_pred EEEEcCCCCCHHHHHHHHHHh
Confidence 377899999999999988664
No 295
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=20.76 E-value=70 Score=20.64 Aligned_cols=18 Identities=28% Similarity=0.209 Sum_probs=14.2
Q ss_pred eeeCCCCCCHHHHHHHHH
Q psy2050 34 ILADEMGLGKTIQVISFL 51 (131)
Q Consensus 34 ilad~mGlGKT~~~ia~l 51 (131)
++..-||.|||-.+=.+.
T Consensus 7 ~l~G~~GsGKST~a~~La 24 (178)
T 1qhx_A 7 ILNGGSSAGKSGIVRCLQ 24 (178)
T ss_dssp EEECCTTSSHHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHH
Confidence 567889999998776654
No 296
>2r9v_A ATP synthase subunit alpha; TM1612, structural genomics, JOI for structural genomics, JCSG, protein structure initiative ATP synthesis; HET: ATP PG4; 2.10A {Thermotoga maritima MSB8}
Probab=20.73 E-value=48 Score=26.92 Aligned_cols=36 Identities=19% Similarity=0.124 Sum_probs=23.5
Q ss_pred HHHHHHHHHhhcccCeeeeCCCCCCHHHHHHHHHHHH
Q psy2050 18 VGLNWLAVMHNQQLCGILADEMGLGKTIQVISFLAYL 54 (131)
Q Consensus 18 ~~v~~l~~~~~~~~g~ilad~mGlGKT~~~ia~l~~~ 54 (131)
.+++-|.-.-+.++.+|+|+ -|.|||..++..|...
T Consensus 164 raID~l~PigrGQR~~I~g~-~g~GKT~Lal~~I~~~ 199 (515)
T 2r9v_A 164 KAIDSMIPIGRGQRELIIGD-RQTGKTAIAIDTIINQ 199 (515)
T ss_dssp HHHHHHSCEETTCBEEEEEE-TTSSHHHHHHHHHHTT
T ss_pred cccccccccccCCEEEEEcC-CCCCccHHHHHHHHHh
Confidence 45655554444445566665 7999999888766543
No 297
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=20.67 E-value=82 Score=20.36 Aligned_cols=21 Identities=24% Similarity=0.341 Sum_probs=15.4
Q ss_pred eeeCCCCCCHHHHHHHHHHHH
Q psy2050 34 ILADEMGLGKTIQVISFLAYL 54 (131)
Q Consensus 34 ilad~mGlGKT~~~ia~l~~~ 54 (131)
++..-+|.|||-++-.+...+
T Consensus 5 ~i~G~~GsGKsT~~~~L~~~l 25 (194)
T 1nks_A 5 IVTGIPGVGKSTVLAKVKEIL 25 (194)
T ss_dssp EEEECTTSCHHHHHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHHHHH
Confidence 456679999998877665544
No 298
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=20.65 E-value=1.3e+02 Score=25.49 Aligned_cols=25 Identities=28% Similarity=0.323 Sum_probs=20.1
Q ss_pred CeeeeCCCCCCHHHHHHHHHHHHHH
Q psy2050 32 CGILADEMGLGKTIQVISFLAYLHE 56 (131)
Q Consensus 32 g~ilad~mGlGKT~~~ia~l~~~~~ 56 (131)
+-+|..+.|.|||..+-++...+..
T Consensus 193 ~vlL~G~pG~GKT~la~~la~~l~~ 217 (854)
T 1qvr_A 193 NPVLIGEPGVGKTAIVEGLAQRIVK 217 (854)
T ss_dssp CCEEEECTTSCHHHHHHHHHHHHHH
T ss_pred ceEEEcCCCCCHHHHHHHHHHHHhc
Confidence 5678999999999988887766544
No 299
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=20.63 E-value=90 Score=21.45 Aligned_cols=19 Identities=26% Similarity=0.321 Sum_probs=15.2
Q ss_pred eeeeCCCCCCHHHHHHHHH
Q psy2050 33 GILADEMGLGKTIQVISFL 51 (131)
Q Consensus 33 ~ilad~mGlGKT~~~ia~l 51 (131)
-++..-+|.|||-++-.+.
T Consensus 19 I~l~G~~GsGKsT~a~~La 37 (233)
T 1ak2_A 19 AVLLGPPGAGKGTQAPKLA 37 (233)
T ss_dssp EEEECCTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 4667889999999887664
No 300
>3mbd_A Fructose-bisphosphate aldolase; glycolysis, lyase, schiff base; 2.00A {Encephalitozoon cuniculi} PDB: 3mbf_A* 3qrh_A
Probab=20.59 E-value=77 Score=24.33 Aligned_cols=41 Identities=27% Similarity=0.270 Sum_probs=25.5
Q ss_pred CCcchHHHHHHHHHHHHhhcccCeee-eCCCC--CCHHHHHHHH
Q psy2050 10 LKLAGYQLVGLNWLAVMHNQQLCGIL-ADEMG--LGKTIQVISF 50 (131)
Q Consensus 10 ~~L~~~Q~~~v~~l~~~~~~~~g~il-ad~mG--lGKT~~~ia~ 50 (131)
.-|-+-|.+.+.-..........||| |||-+ +||.+..+.+
T Consensus 4 ~~~~~~~~~eL~~~A~~iva~GKGiLAADES~gt~~Krl~~iGv 47 (342)
T 3mbd_A 4 SMMDCDHLLRLGMTAKKILENGKGILAADETPKTLGRRFEKLGI 47 (342)
T ss_dssp --CCHHHHHHHHHHHHHHHGGGCEEEEECCCHHHHHHHHHHTTC
T ss_pred ccCCHHHHHHHHHHHHHHhCCCCeEEEecCCCCchHHHHHHcCC
Confidence 33445566666555555546666777 77775 7788887764
No 301
>2wbe_C Bipolar kinesin KRP-130; EG5, KLP61F, tubulin, mitosis, GTP-binding, motor protein, cell division, cell cycle, microtubule, ATP-binding; HET: GTP ANP GDP TA1; 9.40A {Drosophila melanogaster}
Probab=20.44 E-value=1.2e+02 Score=23.34 Aligned_cols=21 Identities=29% Similarity=0.578 Sum_probs=15.3
Q ss_pred ccc-CeeeeC-CCCCCHHHHHHH
Q psy2050 29 QQL-CGILAD-EMGLGKTIQVIS 49 (131)
Q Consensus 29 ~~~-g~ilad-~mGlGKT~~~ia 49 (131)
.+. ++|+|. ..|.|||.+...
T Consensus 98 ~G~n~tifAYGqTGSGKTyTm~G 120 (373)
T 2wbe_C 98 NGYNCTVFAYGQTGTGKTHTMVG 120 (373)
T ss_dssp HTCCEEEEEECSTTSSHHHHHTB
T ss_pred CCceEEEEeecCCCCCcceeccc
Confidence 444 667755 789999998753
No 302
>1ny5_A Transcriptional regulator (NTRC family); AAA+ ATPase, sigma54 activator, bacterial transcription, DIM transcription; HET: ADP; 2.40A {Aquifex aeolicus} SCOP: c.23.1.1 c.37.1.20 PDB: 1ny6_A* 3m0e_A* 1zy2_A*
Probab=20.37 E-value=2.4e+02 Score=21.17 Aligned_cols=17 Identities=24% Similarity=0.384 Sum_probs=13.8
Q ss_pred CeeeeCCCCCCHHHHHH
Q psy2050 32 CGILADEMGLGKTIQVI 48 (131)
Q Consensus 32 g~ilad~mGlGKT~~~i 48 (131)
.-++..|.|.||+..+-
T Consensus 162 ~vli~Ge~GtGK~~lAr 178 (387)
T 1ny5_A 162 PVLITGESGVGKEVVAR 178 (387)
T ss_dssp CEEEECSTTSSHHHHHH
T ss_pred CeEEecCCCcCHHHHHH
Confidence 45789999999998554
Done!