RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy2050
(131 letters)
>gnl|CDD|215770 pfam00176, SNF2_N, SNF2 family N-terminal domain. This domain is
found in proteins involved in a variety of processes
including transcription regulation (e.g., SNF2, STH1,
brahma, MOT1), DNA repair (e.g. ERCC6, RAD16, RAD5),
DNA recombination (e.g. RAD54), and chromatin unwinding
(e.g. ISWI) as well as a variety of other proteins with
little functional information (e.g. lodestar, ETL1).
Length = 301
Score = 87.4 bits (217), Expect = 7e-22
Identities = 34/62 (54%), Positives = 41/62 (66%), Gaps = 3/62 (4%)
Query: 15 YQLVGLNWLAVMHNQQLCGILADEMGLGKTIQVISFLA-YLHEAGLSRPKSPHLIIVPSS 73
YQL G+NWL + + L GILADEMGLGKT+Q I+ LA YL E R P L++ P S
Sbjct: 1 YQLEGVNWLISLESNGLGGILADEMGLGKTLQTIALLATYLKEGKDRR--GPTLVVCPLS 58
Query: 74 TL 75
TL
Sbjct: 59 TL 60
>gnl|CDD|215601 PLN03142, PLN03142, Probable chromatin-remodeling complex ATPase
chain; Provisional.
Length = 1033
Score = 87.2 bits (216), Expect = 5e-21
Identities = 36/66 (54%), Positives = 46/66 (69%), Gaps = 4/66 (6%)
Query: 11 KLAGYQLVGLNWLAVMHNQQLCGILADEMGLGKTIQVISFLAYLHE-AGLSRPKSPHLII 69
K+ YQL GLNWL ++ + GILADEMGLGKT+Q IS L YLHE G++ PH+++
Sbjct: 169 KMRDYQLAGLNWLIRLYENGINGILADEMGLGKTLQTISLLGYLHEYRGIT---GPHMVV 225
Query: 70 VPSSTL 75
P STL
Sbjct: 226 APKSTL 231
>gnl|CDD|223627 COG0553, HepA, Superfamily II DNA/RNA helicases, SNF2 family
[Transcription / DNA replication, recombination, and
repair].
Length = 866
Score = 72.5 bits (177), Expect = 7e-16
Identities = 32/66 (48%), Positives = 42/66 (63%), Gaps = 2/66 (3%)
Query: 11 KLAGYQLVGLNWLAVMHNQQLC-GILADEMGLGKTIQVISFLAYLHEAGLSRPKSPHLII 69
+L YQL G+NWL+ + L GILAD+MGLGKT+Q I+ L L E+ P LI+
Sbjct: 338 ELRPYQLEGVNWLSELLRSNLLGGILADDMGLGKTVQTIALLLSLLESIKVYLG-PALIV 396
Query: 70 VPSSTL 75
VP+S L
Sbjct: 397 VPASLL 402
>gnl|CDD|214692 smart00487, DEXDc, DEAD-like helicases superfamily.
Length = 201
Score = 52.1 bits (125), Expect = 3e-09
Identities = 18/71 (25%), Positives = 25/71 (35%), Gaps = 6/71 (8%)
Query: 6 KARNLKLAGYQLVGLNWLAVMHNQQLCGILADEMGLGKTIQVISFLAYLHEAGLSRPKSP 65
K L YQ + + + ILA G GKT+ L EA
Sbjct: 3 KFGFEPLRPYQKEAIEA---LLSGLRDVILAAPTGSGKTLA---ALLPALEALKRGKGGR 56
Query: 66 HLIIVPSSTLC 76
L++VP+ L
Sbjct: 57 VLVLVPTRELA 67
>gnl|CDD|238005 cd00046, DEXDc, DEAD-like helicases superfamily. A diverse family
of proteins involved in ATP-dependent RNA or DNA
unwinding. This domain contains the ATP-binding region.
Length = 144
Score = 45.8 bits (109), Expect = 4e-07
Identities = 12/43 (27%), Positives = 18/43 (41%), Gaps = 3/43 (6%)
Query: 33 GILADEMGLGKTIQVISFLAYLHEAGLSRPKSPHLIIVPSSTL 75
+LA G GKT+ L + E S L++ P+ L
Sbjct: 3 VLLAAPTGSGKTLA---ALLPILELLDSLKGGQVLVLAPTREL 42
>gnl|CDD|235319 PRK04914, PRK04914, ATP-dependent helicase HepA; Validated.
Length = 956
Score = 36.4 bits (85), Expect = 0.002
Identities = 18/50 (36%), Positives = 22/50 (44%), Gaps = 25/50 (50%)
Query: 35 LADEMGLGKTIQVISFLAYLHEAGL-----------SRPKSPHLIIVPSS 73
LADE+GLGKTI EAG+ R LI+VP +
Sbjct: 174 LADEVGLGKTI----------EAGMIIHQQLLTGRAERV----LILVPET 209
>gnl|CDD|240658 cd12181, ceo_syn, N(5)-(carboxyethyl)ornithine synthase.
N(5)-(carboxyethyl)ornithine synthase (ceo_syn)
catalyzes the NADP-dependent conversion of
N5-(L-1-carboxyethyl)-L-ornithine to L-ornithine +
pyruvate. Ornithine plays a key role in the urea cycle,
which in mammals is used in arginine biosynthesis, and
is a precursor in polyamine synthesis. ceo_syn is
related to the NAD-dependent L-alanine dehydrogenases.
Like formate dehydrogenase and related enzymes, ceo_syn
is comprised of 2 domains connected by a long alpha
helical stretch, each resembling a Rossmann fold
NAD-binding domain. The NAD-binding domain is inserted
within the linear sequence of the more divergent
catalytic domain. These ceo_syn proteins have a
partially conserved NAD-binding motif and active site
residues that are characteristic of related enzymes such
as Saccharopine Dehydrogenase.
Length = 295
Score = 29.9 bits (68), Expect = 0.30
Identities = 14/43 (32%), Positives = 19/43 (44%), Gaps = 10/43 (23%)
Query: 8 RNLKLAGYQLVGLNWLAVMHNQQLCGILADEMGLGKTIQVISF 50
+N +LAGY AV+H QL GI + V+ F
Sbjct: 130 KNNELAGYA-------AVLHALQLYGITPYR---QTKVAVLGF 162
>gnl|CDD|173237 PRK14776, PRK14776, lipoprotein signal peptidase; Provisional.
Length = 170
Score = 26.1 bits (57), Expect = 6.0
Identities = 11/45 (24%), Positives = 23/45 (51%)
Query: 11 KLAGYQLVGLNWLAVMHNQQLCGILADEMGLGKTIQVISFLAYLH 55
KL+ Y L+ ++ L +Q + ++ M G+ + V F ++H
Sbjct: 7 KLSPYALLSISGLLAASDQAVKWLVQQSMAYGEYVSVTPFFNWVH 51
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.320 0.135 0.414
Gapped
Lambda K H
0.267 0.0643 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 6,486,241
Number of extensions: 538002
Number of successful extensions: 398
Number of sequences better than 10.0: 1
Number of HSP's gapped: 392
Number of HSP's successfully gapped: 14
Length of query: 131
Length of database: 10,937,602
Length adjustment: 86
Effective length of query: 45
Effective length of database: 7,123,158
Effective search space: 320542110
Effective search space used: 320542110
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (24.4 bits)