RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy2050
         (131 letters)



>d1z63a1 c.37.1.19 (A:432-661) Helicase of the SNF2/Rad54 hamily
          {Sulfolobus solfataricus [TaxId: 2287]}
          Length = 230

 Score = 62.0 bits (149), Expect = 2e-13
 Identities = 23/81 (28%), Positives = 37/81 (45%), Gaps = 3/81 (3%)

Query: 9  NLKLAGYQLVGLNWLAVMHNQQLCGILADEMGLGKTIQVISFLAYLHEAGLSRPKSPHLI 68
             L  YQ+ G +W+  M+       LAD+MGLGKT+Q I+  +   +       +P L+
Sbjct: 10 KANLRPYQIKGFSWMRFMNKLGFGICLADDMGLGKTLQTIAVFSDAKK---ENELTPSLV 66

Query: 69 IVPSSTLCKYKVPSRWRTSNC 89
          I P S L  ++        + 
Sbjct: 67 ICPLSVLKNWEEELSKFAPHL 87


>d1z3ix2 c.37.1.19 (X:92-389) Rad54-like, Rad54L {Zebra fish (Danio
           rerio) [TaxId: 7955]}
          Length = 298

 Score = 59.7 bits (143), Expect = 3e-12
 Identities = 22/90 (24%), Positives = 34/90 (37%), Gaps = 5/90 (5%)

Query: 11  KLAGYQLVGLNWL-----AVMHNQQLCGILADEMGLGKTIQVISFLAYLHEAGLSRPKSP 65
            L  +Q  G+ +L               I+ADEMGLGKT+Q I+ +  L +         
Sbjct: 55  VLRPHQREGVKFLWDCVTGRRIENSYGCIMADEMGLGKTLQCITLIWTLLKQSPDCKPEI 114

Query: 66  HLIIVPSSTLCKYKVPSRWRTSNCDKTSPV 95
             +IV S +       +        +  PV
Sbjct: 115 DKVIVVSPSSLVRNWYNEVGKWLGGRVQPV 144


>d1cm8a_ d.144.1.7 (A:) MAP kinase p38-gamma {Human (Homo sapiens)
           [TaxId: 9606]}
          Length = 346

 Score = 29.0 bits (64), Expect = 0.13
 Identities = 19/116 (16%), Positives = 43/116 (37%), Gaps = 5/116 (4%)

Query: 15  YQLVGLNWLAVMHNQQLCGILADEMGLGKTIQVISFLAYLHEAGLS-RPKSPHLIIVPSS 73
              +G +   +M +++L     ++       Q++  L Y+H AG+  R   P  + V   
Sbjct: 102 MPFMGTDLGKLMKHEKL----GEDRIQFLVYQMLKGLRYIHAAGIIHRDLKPGNLAVNED 157

Query: 74  TLCKYKVPSRWRTSNCDKTSPVKPQTITVAQLRVPECDQSPSQEVGYNDIIMYLNI 129
              K       R ++ + T  V  +     ++ +     + + ++     IM   I
Sbjct: 158 CELKILDFGLARQADSEMTGYVVTRWYRAPEVILNWMRYTQTVDIWSVGCIMAEMI 213


>d2bmfa2 c.37.1.14 (A:178-482) Dengue virus helicase {Dengue virus
          type 2 [TaxId: 11060]}
          Length = 305

 Score = 27.2 bits (59), Expect = 0.56
 Identities = 11/44 (25%), Positives = 20/44 (45%), Gaps = 4/44 (9%)

Query: 34 ILADEMGLGKTIQVISFLAYLHEAGLSRPKSPHLIIVPSSTLCK 77
          I+    G GKT + +   A + EA     ++  LI+ P+  +  
Sbjct: 13 IMDLHPGAGKTKRYL--PAIVREAIKRGLRT--LILAPTRVVAA 52


>d1gr0a1 c.2.1.3 (A:14-200,A:312-367) Myo-inositol 1-phosphate
           synthase {Mycobacterium tuberculosis [TaxId: 1773]}
          Length = 243

 Score = 26.2 bits (58), Expect = 1.4
 Identities = 10/49 (20%), Positives = 19/49 (38%), Gaps = 2/49 (4%)

Query: 6   KARNLKLAGYQLVGLNWLAVMHNQQLCGILADEMGLGKTIQVISFLAYL 54
               + + G  +   N   V+ +      +A + G+G  +   S  AYL
Sbjct: 174 TDARVPIVGDDIKSPNSAGVIIDAVRAAKIAKDRGIGGPVIPAS--AYL 220


>d1p1ja1 c.2.1.3 (A:9-322,A:438-533) Myo-inositol 1-phosphate
           synthase {Baker's yeast (Saccharomyces cerevisiae)
           [TaxId: 4932]}
          Length = 410

 Score = 24.8 bits (54), Expect = 4.4
 Identities = 10/52 (19%), Positives = 21/52 (40%), Gaps = 5/52 (9%)

Query: 17  LVGLNWLAVMHNQQL--CGILADEMGLGKTIQ-VISFLAYLHEAGLSRPKSP 65
           L+ +                + ++ G  +    V++FL+Y  +A L+RP   
Sbjct: 326 LLVMTEF--CTRVSYKKVDPVKEDAGKFENFYPVLTFLSYWLKAPLTRPGFH 375


>d1a1va1 c.37.1.14 (A:190-325) HCV helicase domain {Human
          hepatitis C virus (HCV), different isolates [TaxId:
          11103]}
          Length = 136

 Score = 24.0 bits (51), Expect = 5.6
 Identities = 9/29 (31%), Positives = 13/29 (44%), Gaps = 1/29 (3%)

Query: 24 AVMHNQQLCGILADEMGLGKTIQVISFLA 52
          AV  + Q    L    G GK+ +V +  A
Sbjct: 3  AVPQSFQ-VAHLHAPTGSGKSTKVPAAYA 30


>d2uzga1 g.44.1.5 (A:36-130) Ubiquitin carboxyl-terminal hydrolase
          33, UBP33 {Human (Homo sapiens) [TaxId: 9606]}
          Length = 95

 Score = 23.4 bits (50), Expect = 7.1
 Identities = 9/34 (26%), Positives = 10/34 (29%)

Query: 61 RPKSPHLIIVPSSTLCKYKVPSRWRTSNCDKTSP 94
          R   PHL  V   T       S     +C    P
Sbjct: 1  RNHCPHLDSVGEITKEDLIQKSLGTCQDCKVQGP 34


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.320    0.135    0.414 

Gapped
Lambda     K      H
   0.267   0.0571    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 470,297
Number of extensions: 18821
Number of successful extensions: 54
Number of sequences better than 10.0: 1
Number of HSP's gapped: 53
Number of HSP's successfully gapped: 12
Length of query: 131
Length of database: 2,407,596
Length adjustment: 76
Effective length of query: 55
Effective length of database: 1,364,116
Effective search space: 75026380
Effective search space used: 75026380
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 48 (22.6 bits)