BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy2054
(75 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1OIP|A Chain A, The Molecular Basis Of Vitamin E Retention: Structure Of
Human Alpha-tocopherol Transfer Protein
pdb|1OIZ|A Chain A, The Molecular Basis Of Vitamin E Retention: Structure Of
Human Alpha-Tocopherol Transfer Protein
pdb|1OIZ|B Chain B, The Molecular Basis Of Vitamin E Retention: Structure Of
Human Alpha-Tocopherol Transfer Protein
Length = 278
Score = 47.4 bits (111), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 41/74 (55%), Gaps = 6/74 (8%)
Query: 2 DFSKISLEEAFQLGTSVFEIALLDPRLQISGAEKIPLRVKAIHIVNQPFYFNALYAIFKP 61
D AFQ+ SV + ++ + PL+V+ IH++N+P F+A++++ KP
Sbjct: 159 DLEGWQFSHAFQITPSVAK------KIAAVLTDSFPLKVRGIHLINEPVIFHAVFSMIKP 212
Query: 62 FLKQKLRRRWCLDG 75
FL +K++ R + G
Sbjct: 213 FLTEKIKERIHMHG 226
>pdb|3HY5|A Chain A, Crystal Structure Of Cralbp
Length = 316
Score = 47.0 bits (110), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 41/74 (55%), Gaps = 6/74 (8%)
Query: 2 DFSKISLEEAFQLGTSVFEIALLDPRLQISGAEKIPLRVKAIHIVNQPFYFNALYAIFKP 61
+F ++++A L TS ++ + LQ S P R KAIH ++QP+YF Y + KP
Sbjct: 202 NFKGFTMQQAASLRTS--DLRKMVDMLQDS----FPARFKAIHFIHQPWYFTTTYNVVKP 255
Query: 62 FLKQKLRRRWCLDG 75
FLK KL R + G
Sbjct: 256 FLKSKLLERVFVHG 269
>pdb|1R5L|A Chain A, Crystal Structure Of Human Alpha-tocopherol Transfer
Protein Bound To Its Ligand
Length = 262
Score = 45.1 bits (105), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 39/74 (52%), Gaps = 6/74 (8%)
Query: 2 DFSKISLEEAFQLGTSVFEIALLDPRLQISGAEKIPLRVKAIHIVNQPFYFNALYAIFKP 61
D AFQ+ SV + ++ + PL+V+ IH++N+P F+A+++ KP
Sbjct: 143 DLEGWQFSHAFQITPSVAK------KIAAVLTDSFPLKVRGIHLINEPVIFHAVFSXIKP 196
Query: 62 FLKQKLRRRWCLDG 75
FL +K++ R G
Sbjct: 197 FLTEKIKERIHXHG 210
>pdb|3HX3|A Chain A, Crystal Structure Of Cralbp Mutant R234w
Length = 316
Score = 43.1 bits (100), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 19/42 (45%), Positives = 25/42 (59%)
Query: 34 EKIPLRVKAIHIVNQPFYFNALYAIFKPFLKQKLRRRWCLDG 75
+ P KAIH ++QP+YF Y + KPFLK KL R + G
Sbjct: 228 DSFPAWFKAIHFIHQPWYFTTTYNVVKPFLKSKLLERVFVHG 269
>pdb|1AUA|A Chain A, Phosphatidylinositol Transfer Protein Sec14p From
Saccharomyces Cerevisiae
Length = 296
Score = 34.7 bits (78), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 31/63 (49%), Gaps = 7/63 (11%)
Query: 1 MDFSKISLEEAFQLGTSVFEIALLDPRLQISGAEKIPLRVKAIHIVNQPFYFNALYAIFK 60
MD IS+ A+ + + V E + + P R+ +I+N PF F+ + +FK
Sbjct: 174 MDLKGISISSAYSVMSYVREASYISQNY-------YPERMGKFYIINAPFGFSTAFRLFK 226
Query: 61 PFL 63
PFL
Sbjct: 227 PFL 229
>pdb|3Q8G|A Chain A, Resurrection Of A Functional Phosphatidylinositol Transfer
Protein From A Pseudo-Sec14 Scaffold By Directed
Evolution
Length = 320
Score = 31.6 bits (70), Expect = 0.13, Method: Composition-based stats.
Identities = 16/63 (25%), Positives = 32/63 (50%), Gaps = 7/63 (11%)
Query: 1 MDFSKISLEEAFQLGTSVFEIALLDPRLQISGAEKIPLRVKAIHIVNQPFYFNALYAIFK 60
+D ISL A+ + + + ++A + P R+ +I++ PF F+ ++ + K
Sbjct: 189 LDLKGISLSNAYHVLSYIKDVADISQNY-------YPERMGKFYIIHSPFGFSTMFKMVK 241
Query: 61 PFL 63
PFL
Sbjct: 242 PFL 244
>pdb|3B74|A Chain A, Crystal Structure Of Yeast Sec14 Homolog Sfh1 In Complex
With Phosphatidylethanolamine
pdb|3B7N|A Chain A, Crystal Structure Of Yeast Sec14 Homolog Sfh1 In Complex
With Phosphatidylinositol
pdb|3B7Q|A Chain A, Crystal Structure Of Yeast Sec14 Homolog Sfh1 In Complex
With Phosphatidylcholine
pdb|3B7Q|B Chain B, Crystal Structure Of Yeast Sec14 Homolog Sfh1 In Complex
With Phosphatidylcholine
pdb|3B7Z|A Chain A, Crystal Structure Of Yeast Sec14 Homolog Sfh1 In Complex
With Phosphatidylcholine Or Phosphatidylinositol
Length = 320
Score = 31.6 bits (70), Expect = 0.13, Method: Composition-based stats.
Identities = 16/63 (25%), Positives = 32/63 (50%), Gaps = 7/63 (11%)
Query: 1 MDFSKISLEEAFQLGTSVFEIALLDPRLQISGAEKIPLRVKAIHIVNQPFYFNALYAIFK 60
+D ISL A+ + + + ++A + P R+ +I++ PF F+ ++ + K
Sbjct: 189 LDLKGISLSNAYHVLSYIKDVADISQNY-------YPERMGKFYIIHSPFGFSTMFKMVK 241
Query: 61 PFL 63
PFL
Sbjct: 242 PFL 244
>pdb|3NUA|A Chain A, Crystal Structure Of
Phosphoribosylaminoimidazole-Succinocarboxamide Synthase
From Clostridium Perfringens
pdb|3NUA|B Chain B, Crystal Structure Of
Phosphoribosylaminoimidazole-Succinocarboxamide Synthase
From Clostridium Perfringens
Length = 238
Score = 26.2 bits (56), Expect = 4.8, Method: Composition-based stats.
Identities = 10/24 (41%), Positives = 17/24 (70%)
Query: 5 KISLEEAFQLGTSVFEIALLDPRL 28
++ LEE ++L T+VFE++ D L
Sbjct: 108 RLGLEEGYELKTTVFELSYKDDSL 131
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.329 0.144 0.435
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,956,007
Number of Sequences: 62578
Number of extensions: 59847
Number of successful extensions: 140
Number of sequences better than 100.0: 8
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 132
Number of HSP's gapped (non-prelim): 8
length of query: 75
length of database: 14,973,337
effective HSP length: 44
effective length of query: 31
effective length of database: 12,219,905
effective search space: 378817055
effective search space used: 378817055
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 45 (21.9 bits)