Query         psy2054
Match_columns 75
No_of_seqs    133 out of 725
Neff          8.0 
Searched_HMMs 46136
Date          Fri Aug 16 23:03:45 2013
Command       hhsearch -i /work/01045/syshi/Psyhhblits/psy2054.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/2054hhsearch_cdd -cpu 12 -v 0 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 PF00650 CRAL_TRIO:  CRAL/TRIO   99.7   4E-18 8.6E-23  103.3   4.2   75    1-75     29-135 (159)
  2 KOG1471|consensus               99.7 2.1E-17 4.6E-22  110.4   2.7   73    2-74    130-233 (317)
  3 smart00516 SEC14 Domain in hom  99.7 1.4E-16 2.9E-21   96.4   5.9   75    1-75     30-133 (158)
  4 cd00170 SEC14 Sec14p-like lipi  99.5 2.3E-14   5E-19   85.4   5.9   70    6-75     37-135 (157)
  5 KOG1470|consensus               98.9 1.3E-09 2.7E-14   74.1   4.1   71    3-73    122-219 (324)
  6 KOG4406|consensus               95.7   0.019 4.1E-07   40.9   4.2   62   11-72    115-198 (467)
  7 PF13716 CRAL_TRIO_2:  Divergen  93.5   0.041 8.8E-07   32.9   1.3   39   34-72     79-119 (149)
  8 PF04378 RsmJ:  Ribosomal RNA s  74.5     4.1   9E-05   27.1   2.9   34   36-69    201-234 (245)
  9 COG2961 ComJ Protein involved   73.9       5 0.00011   27.2   3.2   28   41-68    237-264 (279)
 10 PF02228 Gag_p19:  Major core p  47.1      20 0.00043   20.1   2.0   41    3-43     38-83  (92)
 11 KOG2304|consensus               43.8      13 0.00028   25.2   1.1   22   34-55    144-165 (298)
 12 PHA02677 hypothetical protein;  43.7      27 0.00058   20.5   2.2   19   51-69     10-28  (108)
 13 PF00561 Abhydrolase_1:  alpha/  42.8      74  0.0016   19.1   5.4   46    3-49     22-78  (230)
 14 KOG4178|consensus               41.5      41 0.00089   23.5   3.2   47    4-51     92-149 (322)
 15 TIGR00401 msrA methionine-S-su  41.1      19 0.00041   22.2   1.4   20    1-20     58-77  (149)
 16 PRK05528 methionine sulfoxide   37.3      25 0.00055   21.9   1.6   20    1-20     54-73  (156)
 17 PRK14054 methionine sulfoxide   34.7      28  0.0006   22.0   1.5   20    1-20     61-80  (172)
 18 COG0225 MsrA Peptide methionin  33.1      23 0.00049   22.6   0.9   20    1-20     64-83  (174)
 19 PRK13014 methionine sulfoxide   33.0      31 0.00067   22.1   1.5   20    1-20     66-85  (186)
 20 PRK05428 HPr kinase/phosphoryl  31.4      57  0.0012   22.6   2.7   35   41-75    105-139 (308)
 21 PF01625 PMSR:  Peptide methion  28.6      34 0.00074   21.2   1.1   20    1-20     58-77  (155)
 22 PF04009 DUF356:  Protein of un  28.6      25 0.00054   20.7   0.5   36   39-74     21-58  (107)
 23 PF13972 TetR:  Bacterial trans  28.3      50  0.0011   19.5   1.8   20   51-70    125-144 (146)
 24 PF15156 CLN6:  Ceroid-lipofusc  26.7      55  0.0012   22.0   1.9   25   46-70     50-77  (284)
 25 PRK00058 methionine sulfoxide   23.5      58  0.0013   21.4   1.5   55    1-61    103-158 (213)
 26 COG1250 FadB 3-hydroxyacyl-CoA  22.5      36 0.00078   23.5   0.5   20   34-53    130-149 (307)
 27 TIGR00679 hpr-ser Hpr(Ser) kin  22.4      94   0.002   21.5   2.5   35   41-75    105-139 (304)
 28 COG4860 Uncharacterized protei  21.9 1.2E+02  0.0027   18.9   2.7   28   40-67      2-29  (170)
 29 PLN02824 hydrolase, alpha/beta  21.5 1.6E+02  0.0034   19.0   3.3   44    5-49     82-136 (294)
 30 PRK08269 3-hydroxybutyryl-CoA   21.1      19 0.00042   24.5  -1.0   16   35-50    128-143 (314)
 31 PRK00175 metX homoserine O-ace  20.8 1.7E+02  0.0036   20.1   3.5   47    5-51    126-183 (379)
 32 PF08152 GUCT:  GUCT (NUC152) d  20.2 1.1E+02  0.0024   17.3   2.1   20   53-72     32-51  (97)

No 1  
>PF00650 CRAL_TRIO:  CRAL/TRIO domain;  InterPro: IPR001251 This entry defines the C-terminal of various retinaldehyde/retinal-binding proteins that may be functional components of the visual cycle. Cellular retinaldehyde-binding protein (CRALBP) carries 11-cis-retinol or 11-cis-retinaldehyde as endogenous ligands and may function as a substrate carrier protein that modulates interaction of these retinoids with visual cycle enzymes []. The multidomain protein Trio binds the LAR transmembrane tyrosine phosphatase, contains a protein kinase domain, and has separate rac-specific and rho-specific guanine nucleotide exchange factor domains []. Trio is a multifunctional protein that integrates and amplifies signals involved in coordinating actin remodeling, which is necessary for cell migration and growth. Other members of the family are transfer proteins that include, guanine nucleotide exchange factor that may function as an effector of RAC1, phosphatidylinositol/phosphatidylcholine transfer protein that is required for the transport of secretory proteins from the golgi complex and alpha-tocopherol transfer protein that enhances the transfer of the ligand between separate membranes.; PDB: 1OIZ_A 1R5L_A 1OIP_A 3HX3_A 3HY5_A 1OLM_E 1O6U_E 3Q8G_A 3B7Q_B 3B7Z_A ....
Probab=99.73  E-value=4e-18  Score=103.26  Aligned_cols=75  Identities=31%  Similarity=0.504  Sum_probs=61.4

Q ss_pred             CCCCCCCHHHHHHHHHHHHHHHhcCCc--ccccCc------------------------------CccccccceEEEEeC
Q psy2054           1 MDFSKISLEEAFQLGTSVFEIALLDPR--LQISGA------------------------------EKIPLRVKAIHIVNQ   48 (75)
Q Consensus         1 ~dp~~~s~~~~~r~~~~~~e~~l~~~~--~q~~G~------------------------------~~~P~R~k~ih~iN~   48 (75)
                      +|+++++..|+.|+..+.+|.++...+  .++.|+                              ++||.|++++|++|+
T Consensus        29 ~~~~~~~~~~~~~~~~~~~E~~~~~~~~~~~~~~~~~iiD~~g~~~~~~~~~~~~~~k~~~~~~~~~yP~rl~~i~iin~  108 (159)
T PF00650_consen   29 FDPKKFSPEDVIRFFVYLLERMLKRMPEGGQVEGIVVIIDLSGFSLSNFDWWPISFLKKIIQLLQDHYPERLGKIYIINA  108 (159)
T ss_dssp             --HHTS-HHHHHHHHHHHHHHHHHTHHHTSHHH-EEEEEE-TT--HHHHHCHHHHHHHHHHHHHHHHSTTTEEEEEEES-
T ss_pred             CCCCcCCHHHHHHHHHHHHHHHHhhhcccccceeEEEEEeCCCceEeccccchhhhhhhhhhhhcccCCccceeEEEEec
Confidence            577889999999999999999995543  355555                              899999999999999


Q ss_pred             ChhHHHHHHHHHhhhhHHHhccceecC
Q psy2054          49 PFYFNALYAIFKPFLKQKLRRRWCLDG   75 (75)
Q Consensus        49 P~~~~~~~~~~k~fl~~Kl~~Ri~~h~   75 (75)
                      |++++.+|++++|||++|+++||++|+
T Consensus       109 p~~~~~~~~~~~~~l~~~~~~ki~~~~  135 (159)
T PF00650_consen  109 PWFFRVLWKIVKPFLSPKTREKIVFHS  135 (159)
T ss_dssp             -TTHHHHHHHHGGGS-HHHHCTEEEEC
T ss_pred             ChhhhhhHhHHHhhcCHhhheeEEEEC
Confidence            999999999999999999999999984


No 2  
>KOG1471|consensus
Probab=99.67  E-value=2.1e-17  Score=110.36  Aligned_cols=73  Identities=38%  Similarity=0.604  Sum_probs=66.2

Q ss_pred             CCCCCCHHHHHHHHHHHHHHHhcCCcccccCc------------------------------CccccccceEEEEeCChh
Q psy2054           2 DFSKISLEEAFQLGTSVFEIALLDPRLQISGA------------------------------EKIPLRVKAIHIVNQPFY   51 (75)
Q Consensus         2 dp~~~s~~~~~r~~~~~~e~~l~~~~~q~~G~------------------------------~~~P~R~k~ih~iN~P~~   51 (75)
                      |+.+++..+..+...+.+|...++++.+++|.                              ++||.|++++||||+|++
T Consensus       130 ~~~~~~~~~~e~~~~~~~e~~~~~~~~~~~g~~~I~Dl~G~~~~~~~~~~~~~~~~~~~~~q~~yPe~l~~~~iIN~P~~  209 (317)
T KOG1471|consen  130 DYLKYHFKEFEKVFKLVLELELKTGERQISGIVTIFDLKGVSLSHLLKPAPTLLKKILKILQDNYPERLKRIHIINAPTI  209 (317)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhcCCcceeEEEEECCCCcchhHHHHHHHHHHHHHHHHHHhCHHhhceEEEEcCchh
Confidence            45667888999999999999998887777776                              999999999999999999


Q ss_pred             HHHHHHHHHhhhhHHHhccce-ec
Q psy2054          52 FNALYAIFKPFLKQKLRRRWC-LD   74 (75)
Q Consensus        52 ~~~~~~~~k~fl~~Kl~~Ri~-~h   74 (75)
                      |+.+|+++||||++|+++||+ +|
T Consensus       210 f~~~~~~ikpfL~~kt~~ki~~~~  233 (317)
T KOG1471|consen  210 FSALWKVVKPFLDEKTRKKIHVLH  233 (317)
T ss_pred             HHHHHHHHhccCCHHHHhhheecC
Confidence            999999999999999999999 54


No 3  
>smart00516 SEC14 Domain in homologues of a S. cerevisiae phosphatidylinositol transfer protein (Sec14p). Domain in homologues of a S. cerevisiae phosphatidylinositol transfer protein (Sec14p) and in RhoGAPs, RhoGEFs and the RasGAP, neurofibromin (NF1). Lipid-binding domain. The SEC14 domain of Dbl is known to associate with G protein beta/gamma subunits.
Probab=99.67  E-value=1.4e-16  Score=96.42  Aligned_cols=75  Identities=32%  Similarity=0.565  Sum_probs=67.9

Q ss_pred             CCCCCCCHHHHHHHHHHHHHHHhcC--CcccccCc---------------------------CccccccceEEEEeCChh
Q psy2054           1 MDFSKISLEEAFQLGTSVFEIALLD--PRLQISGA---------------------------EKIPLRVKAIHIVNQPFY   51 (75)
Q Consensus         1 ~dp~~~s~~~~~r~~~~~~e~~l~~--~~~q~~G~---------------------------~~~P~R~k~ih~iN~P~~   51 (75)
                      +|++.++.++++|+..+.+|.++.+  ++.++.|+                           ++||.|++++|++|+|++
T Consensus        30 ~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~i~D~~~~~~~~~~~~~lk~~~~~~~~~yp~~l~~i~ivn~p~~  109 (158)
T smart00516       30 FDLKSVTLEELLRYLVYVLEKILQREKKTGGIEGFTVIFDLKGLSMSNPDLSVLRKILKILQDHYPERLGKVLIINPPWF  109 (158)
T ss_pred             cccCcCCHHHHHHHHHHHHHHHHHHHhcCCCeeeEEEEEECCCCCcccccHHHHHHHHHHHHHHhHHHhCeEEEECCCHH
Confidence            4678999999999999999999986  45555555                           999999999999999999


Q ss_pred             HHHHHHHHHhhhhHHHhccceecC
Q psy2054          52 FNALYAIFKPFLKQKLRRRWCLDG   75 (75)
Q Consensus        52 ~~~~~~~~k~fl~~Kl~~Ri~~h~   75 (75)
                      ++.+++++++|+++|+++||++|+
T Consensus       110 ~~~~~~~~~~~l~~~~~~ki~~~~  133 (158)
T smart00516      110 FRVLWKIIKPFLDEKTREKIRFVG  133 (158)
T ss_pred             HHHHHHHHHhhcChhhhccEEEeC
Confidence            999999999999999999999874


No 4  
>cd00170 SEC14 Sec14p-like lipid-binding domain. Found in secretory proteins, such as S. cerevisiae phosphatidylinositol transfer protein (Sec14p), and in lipid regulated proteins such as RhoGAPs, RhoGEFs and neurofibromin (NF1). SEC14 domain of Dbl is known to associate with G protein beta/gamma subunits.
Probab=99.53  E-value=2.3e-14  Score=85.35  Aligned_cols=70  Identities=33%  Similarity=0.591  Sum_probs=63.1

Q ss_pred             CCHHHHHHHHHHHHHHHhcCCcccccCc-----------------------------CccccccceEEEEeCChhHHHHH
Q psy2054           6 ISLEEAFQLGTSVFEIALLDPRLQISGA-----------------------------EKIPLRVKAIHIVNQPFYFNALY   56 (75)
Q Consensus         6 ~s~~~~~r~~~~~~e~~l~~~~~q~~G~-----------------------------~~~P~R~k~ih~iN~P~~~~~~~   56 (75)
                      .+.++.++...+.+|..+.++..+..|.                             ++||.|++.+|++|+|++++.++
T Consensus        37 ~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~i~D~~~~~~~~~~~~~~~~k~~~~~~~~~yp~~l~~v~ivn~p~~~~~~~  116 (157)
T cd00170          37 LDSEELLRYLVYTLEKLLQEDDEQVEGFVVIIDLKGLSLSHLLPDPSLLKKILKILQDNYPERLKAVYIINPPWFFKVLW  116 (157)
T ss_pred             CCHHHHHHHHHHHHHHHHhhhhhcccceEEEEECCCCChhccchhHHHHHHHHHHHHHhChHhhCeEEEECCCHhHHHHH
Confidence            3448999999999999998877664454                             99999999999999999999999


Q ss_pred             HHHHhhhhHHHhccceecC
Q psy2054          57 AIFKPFLKQKLRRRWCLDG   75 (75)
Q Consensus        57 ~~~k~fl~~Kl~~Ri~~h~   75 (75)
                      +++++|+++|+++||++|+
T Consensus       117 ~~~~~~l~~~~~~ki~~~~  135 (157)
T cd00170         117 KIVKPFLSEKTRKKIVFLG  135 (157)
T ss_pred             HHHHHhcCHhhhhhEEEec
Confidence            9999999999999999874


No 5  
>KOG1470|consensus
Probab=98.92  E-value=1.3e-09  Score=74.10  Aligned_cols=71  Identities=27%  Similarity=0.345  Sum_probs=61.8

Q ss_pred             CCCCCHHHHHHHHHHHHHHHhcCCc-c--ccc------Cc------------------CccccccceEEEEeCChhHHHH
Q psy2054           3 FSKISLEEAFQLGTSVFEIALLDPR-L--QIS------GA------------------EKIPLRVKAIHIVNQPFYFNAL   55 (75)
Q Consensus         3 p~~~s~~~~~r~~~~~~e~~l~~~~-~--q~~------G~------------------~~~P~R~k~ih~iN~P~~~~~~   55 (75)
                      ++.-|..+..|...+++|.++.... .  |+.      |.                  ++||.|+....++|+|++|+.+
T Consensus       122 qn~~t~~~~~r~~Vy~mE~Ai~~lp~~qe~~~~L~D~~~fs~sN~d~~~~k~~~~~lq~hYPErLg~a~l~~~P~iF~~~  201 (324)
T KOG1470|consen  122 QNTKTQKELERLLVYTLENAILFLPPGQEQFVWLFDLTGFSMSNPDIKFLKELLHILQDHYPERLGKALLVNAPWIFQPF  201 (324)
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHhCCCCcceEEEEEecccCcccCCCcHHHHHHHHHHHHhChHHhhhhhhcCChHHHHHH
Confidence            5778999999999999999875422 1  333      33                  9999999999999999999999


Q ss_pred             HHHHHhhhhHHHhcccee
Q psy2054          56 YAIFKPFLKQKLRRRWCL   73 (75)
Q Consensus        56 ~~~~k~fl~~Kl~~Ri~~   73 (75)
                      |+++|||+.++++++|.|
T Consensus       202 wkiikpflDp~t~~Kv~F  219 (324)
T KOG1470|consen  202 WKIIKPFLDPKTASKVKF  219 (324)
T ss_pred             HHHhhhccChhhhceeEE
Confidence            999999999999999986


No 6  
>KOG4406|consensus
Probab=95.75  E-value=0.019  Score=40.88  Aligned_cols=62  Identities=15%  Similarity=0.313  Sum_probs=52.4

Q ss_pred             HHHHHHHHHHHHhcCCccc---ccCc-------------------CccccccceEEEEeCChhHHHHHHHHHhhhhHHHh
Q psy2054          11 AFQLGTSVFEIALLDPRLQ---ISGA-------------------EKIPLRVKAIHIVNQPFYFNALYAIFKPFLKQKLR   68 (75)
Q Consensus        11 ~~r~~~~~~e~~l~~~~~q---~~G~-------------------~~~P~R~k~ih~iN~P~~~~~~~~~~k~fl~~Kl~   68 (75)
                      .++.....+|..++++-+-   -.|.                   ..+---+|++++|..-++..++|+++|||.+.|-.
T Consensus       115 li~~~v~~id~~Ve~DYt~vYfh~gl~s~nkp~l~~l~~aYke~Dr~~~KNlKalYvvHptwfikvi~n~~kplIS~KF~  194 (467)
T KOG4406|consen  115 LISYLVYTIDKYVENDYTLVYFHHGLPSDNKPYLQLLFDAYKELDRNFKKNLKALYVVHPTWFIKVIWNLFKPLISLKFT  194 (467)
T ss_pred             HHHHHHHHHHHHHhccceeeehhcCCcccccchHHHHHHHHHHHHHHHhhhhhheEEecHHHHHHHHHHHHhhhcchhhh
Confidence            7888999999999887443   2444                   45666789999999999999999999999999998


Q ss_pred             ccce
Q psy2054          69 RRWC   72 (75)
Q Consensus        69 ~Ri~   72 (75)
                      ++|+
T Consensus       195 rKi~  198 (467)
T KOG4406|consen  195 RKII  198 (467)
T ss_pred             ceeE
Confidence            8875


No 7  
>PF13716 CRAL_TRIO_2:  Divergent CRAL/TRIO domain; PDB: 2D4Q_B 3PG7_B 2E2X_B 3P7Z_B 3PEG_A.
Probab=93.53  E-value=0.041  Score=32.93  Aligned_cols=39  Identities=18%  Similarity=0.538  Sum_probs=30.3

Q ss_pred             CccccccceEEEEeCChhHHHHH-HHHHhhhhHHH-hccce
Q psy2054          34 EKIPLRVKAIHIVNQPFYFNALY-AIFKPFLKQKL-RRRWC   72 (75)
Q Consensus        34 ~~~P~R~k~ih~iN~P~~~~~~~-~~~k~fl~~Kl-~~Ri~   72 (75)
                      ..++-+++.++++|++++++.++ .+.+++.++|. ..++.
T Consensus        79 ~~~~~nl~~vyiv~p~~~~k~~~~~~~~~~~~~~~~~~kv~  119 (149)
T PF13716_consen   79 RKYKKNLKKVYIVHPNWFLKKILATLLRPFVSSKFWKKKVV  119 (149)
T ss_dssp             HHHHHTEEEEEEES--HHHHHHHHHTTTTGGGGTT--TTEE
T ss_pred             HHHhhceEEEEEECCCHHHHHHHHHHhcccccccccceEEE
Confidence            56777899999999999999999 67788888887 66654


No 8  
>PF04378 RsmJ:  Ribosomal RNA small subunit methyltransferase D, RsmJ;  InterPro: IPR007473 This is a bacterial protein of unknown function, possibly secreted.; PDB: 2OO3_A.
Probab=74.51  E-value=4.1  Score=27.14  Aligned_cols=34  Identities=18%  Similarity=0.355  Sum_probs=24.8

Q ss_pred             cccccceEEEEeCChhHHHHHHHHHhhhhHHHhc
Q psy2054          36 IPLRVKAIHIVNQPFYFNALYAIFKPFLKQKLRR   69 (75)
Q Consensus        36 ~P~R~k~ih~iN~P~~~~~~~~~~k~fl~~Kl~~   69 (75)
                      .-+.=.|+.+||.|+-++..+.-+.|+|.+.+.+
T Consensus       201 ~gm~GSGm~iiNPPw~l~~~l~~~l~~L~~~L~~  234 (245)
T PF04378_consen  201 RGMNGSGMLIINPPWTLDEELEEILPWLAETLAQ  234 (245)
T ss_dssp             -S--EEEEEEES--TTHHHHHHHHHHHHHHHSST
T ss_pred             CceecceEEEEcCCccHHHHHHHHHHHHHHHhCc
Confidence            3444467899999999999999999999887654


No 9  
>COG2961 ComJ Protein involved in catabolism of external DNA [General function prediction only]
Probab=73.92  E-value=5  Score=27.22  Aligned_cols=28  Identities=18%  Similarity=0.381  Sum_probs=25.2

Q ss_pred             ceEEEEeCChhHHHHHHHHHhhhhHHHh
Q psy2054          41 KAIHIVNQPFYFNALYAIFKPFLKQKLR   68 (75)
Q Consensus        41 k~ih~iN~P~~~~~~~~~~k~fl~~Kl~   68 (75)
                      .|+.+||.|+-++--+..+.|+|...+-
T Consensus       237 SGMivINPPwtle~ql~~~LP~L~~~L~  264 (279)
T COG2961         237 SGMIVINPPWTLEQQLRAALPWLTTLLA  264 (279)
T ss_pred             eeEEEECCCccHHHHHHHHHHHHHHHhc
Confidence            5789999999999999999999988764


No 10 
>PF02228 Gag_p19:  Major core protein p19;  InterPro: IPR003139 Retroviral matrix proteins (or major core proteins) are components of envelope-associated capsids, which line the inner surface of virus envelopes and are associated with viral membranes []. Matrix proteins are produced as part of Gag precursor polyproteins. During viral maturation, the Gag polyprotein is cleaved into major structural proteins by the viral protease, yielding the matrix (MA), capsid (CA), nucleocapsid (NC), and some smaller peptides. Gag-derived proteins govern the entire assembly and release of the virus particles, with matrix proteins playing key roles in Gag stability, capsid assembly, transport and budding. Although matrix proteins from different retroviruses appear to perform similar functions and can have similar structural folds, their primary sequences can be very different. This entry represents matrix proteins from delta-retroviruses such as Human T-lymphotropic virus 1 and Human T-cell leukemia virus 2 (HTLV-2), both members of the human oncovirus subclass of retroviruses [, ].; GO: 0005198 structural molecule activity, 0019013 viral nucleocapsid; PDB: 1JVR_A.
Probab=47.05  E-value=20  Score=20.15  Aligned_cols=41  Identities=12%  Similarity=0.131  Sum_probs=24.1

Q ss_pred             CCCCCHHHHHHHHHHHHHHHhcCCcc--c-ccCc--CccccccceE
Q psy2054           3 FSKISLEEAFQLGTSVFEIALLDPRL--Q-ISGA--EKIPLRVKAI   43 (75)
Q Consensus         3 p~~~s~~~~~r~~~~~~e~~l~~~~~--q-~~G~--~~~P~R~k~i   43 (75)
                      |+.|++.++-++.-+.++.-.=-...  . ..+.  ++||.|+.+|
T Consensus        38 PS~~DF~qLr~flk~alkTpvwl~pi~yslla~lipkgypgrv~ei   83 (92)
T PF02228_consen   38 PSSFDFHQLRNFLKLALKTPVWLNPINYSLLASLIPKGYPGRVNEI   83 (92)
T ss_dssp             -STTTHHHHHHHHHHHHT-TTSTTTT-TTTHHHHS-SS-STTHHHH
T ss_pred             CCcccHHHHHHHHHHHHcCCeeeccccHHHHHHHccCCCCchHHHH
Confidence            78889999999888877652211111  0 1111  8999998765


No 11 
>KOG2304|consensus
Probab=43.80  E-value=13  Score=25.23  Aligned_cols=22  Identities=18%  Similarity=0.292  Sum_probs=18.4

Q ss_pred             CccccccceEEEEeCChhHHHH
Q psy2054          34 EKIPLRVKAIHIVNQPFYFNAL   55 (75)
Q Consensus        34 ~~~P~R~k~ih~iN~P~~~~~~   55 (75)
                      --=|-|+-|+||.|.++++..+
T Consensus       144 ~~~~srf~GlHFfNPvPvMKLv  165 (298)
T KOG2304|consen  144 TQRPSRFAGLHFFNPVPVMKLV  165 (298)
T ss_pred             ccChhhhceeeccCCchhHHHh
Confidence            4458999999999999988654


No 12 
>PHA02677 hypothetical protein; Provisional
Probab=43.66  E-value=27  Score=20.53  Aligned_cols=19  Identities=37%  Similarity=0.707  Sum_probs=16.8

Q ss_pred             hHHHHHHHHHhhhhHHHhc
Q psy2054          51 YFNALYAIFKPFLKQKLRR   69 (75)
Q Consensus        51 ~~~~~~~~~k~fl~~Kl~~   69 (75)
                      +|=.+||++=|-++||+|.
T Consensus        10 YFILIFNIiVP~I~EKlR~   28 (108)
T PHA02677         10 YFVLIFNILVPGIFEKLRQ   28 (108)
T ss_pred             HHHHHHHHHHHHHHHHHHH
Confidence            5678999999999999985


No 13 
>PF00561 Abhydrolase_1:  alpha/beta hydrolase fold A web page of Esterases and alpha/beta hydrolases.;  InterPro: IPR000073 The alpha/beta hydrolase fold [] is common to a number of hydrolytic enzymes of widely differing phylogenetic origin and catalytic function. The core of each enzyme is an alpha/beta-sheet (rather than a barrel), containing 8 strands connected by helices []. The enzymes are believed to have diverged from a common ancestor, preserving the arrangement of the catalytic residues. All have a catalytic triad, the elements of which are borne on loops, which are the best conserved structural features of the fold. Esterase (EST) from Pseudomonas putida is a member of the alpha/beta hydrolase fold superfamily of enzymes []. In most of the family members the beta-strands are parallels, but some have an inversion of the first strands, which gives it an antiparallel orientation. The catalytic triad residues are presented on loops. One of these is the nucleophile elbow and is the most conserved feature of the fold. Some other members lack one or all of the catalytic residues. Some members are therefore inactive but others are involved in surface recognition. The ESTHER database [] gathers and annotates all the published information related to gene and protein sequences of this superfamily []. This entry represents fold-1 of alpha/beta hydrolase.; PDB: 2VAT_E 2VAX_C 2VAV_H 2PSJ_A 2PSH_B 2PSE_A 2PSF_A 2PSD_A 2EDA_A 1CIJ_A ....
Probab=42.77  E-value=74  Score=19.05  Aligned_cols=46  Identities=17%  Similarity=0.312  Sum_probs=36.8

Q ss_pred             CCCCCHHHHHHHHHHHHHHHhcCCcccccCc-----------CccccccceEEEEeCC
Q psy2054           3 FSKISLEEAFQLGTSVFEIALLDPRLQISGA-----------EKIPLRVKAIHIVNQP   49 (75)
Q Consensus         3 p~~~s~~~~~r~~~~~~e~~l~~~~~q~~G~-----------~~~P~R~k~ih~iN~P   49 (75)
                      ...++..++.+....+++.+-.+. .-+-|.           ..+|.|++++..+++|
T Consensus        22 ~~~~~~~~~~~~~~~~~~~l~~~~-~~~vG~S~Gg~~~~~~a~~~p~~v~~lvl~~~~   78 (230)
T PF00561_consen   22 FPDYTTDDLAADLEALREALGIKK-INLVGHSMGGMLALEYAAQYPERVKKLVLISPP   78 (230)
T ss_dssp             SCTHCHHHHHHHHHHHHHHHTTSS-EEEEEETHHHHHHHHHHHHSGGGEEEEEEESES
T ss_pred             cccccHHHHHHHHHHHHHHhCCCC-eEEEEECCChHHHHHHHHHCchhhcCcEEEeee
Confidence            356788999999999999766655 434444           8899999999999998


No 14 
>KOG4178|consensus
Probab=41.52  E-value=41  Score=23.48  Aligned_cols=47  Identities=19%  Similarity=0.195  Sum_probs=37.4

Q ss_pred             CCCCHHHHHHHHHHHHHHHhcCCcccccCc-----------CccccccceEEEEeCChh
Q psy2054           4 SKISLEEAFQLGTSVFEIALLDPRLQISGA-----------EKIPLRVKAIHIVNQPFY   51 (75)
Q Consensus         4 ~~~s~~~~~r~~~~~~e~~l~~~~~q~~G~-----------~~~P~R~k~ih~iN~P~~   51 (75)
                      +.||...+..-...++|.+- ...+-+-|.           -.+|-|++++..+|.|..
T Consensus        92 ~~Yt~~~l~~di~~lld~Lg-~~k~~lvgHDwGaivaw~la~~~Perv~~lv~~nv~~~  149 (322)
T KOG4178|consen   92 SEYTIDELVGDIVALLDHLG-LKKAFLVGHDWGAIVAWRLALFYPERVDGLVTLNVPFP  149 (322)
T ss_pred             ceeeHHHHHHHHHHHHHHhc-cceeEEEeccchhHHHHHHHHhChhhcceEEEecCCCC
Confidence            57888888888888888877 333334444           899999999999999987


No 15 
>TIGR00401 msrA methionine-S-sulfoxide reductase. This model describes peptide methionine sulfoxide reductase (MsrA), a repair enzyme for proteins that have been inactivated by oxidation. The enzyme from E. coli is coextensive with this model and has enzymatic activity. However, in all completed genomes in which this module is present, a second protein module, described in TIGR00357, is also found, and in several cases as part of the same polypeptide chain: N-terminal to this module in Helicobacter pylori and Haemophilus influenzae (as in PilB of Neisseria gonorrhoeae) but C-terminal to it in Treponema pallidum. PilB, containing both domains, has been shown to be important for the expression of adhesins in certain pathogens.
Probab=41.07  E-value=19  Score=22.18  Aligned_cols=20  Identities=25%  Similarity=0.222  Sum_probs=17.1

Q ss_pred             CCCCCCCHHHHHHHHHHHHH
Q psy2054           1 MDFSKISLEEAFQLGTSVFE   20 (75)
Q Consensus         1 ~dp~~~s~~~~~r~~~~~~e   20 (75)
                      +||++.|..++++..+-..|
T Consensus        58 yDp~~is~~~Ll~~f~~~hd   77 (149)
T TIGR00401        58 YDPKVISYEELLDVFWEIHD   77 (149)
T ss_pred             ECCCcCcHHHHHHHHHHhCC
Confidence            69999999999998876654


No 16 
>PRK05528 methionine sulfoxide reductase A; Provisional
Probab=37.32  E-value=25  Score=21.86  Aligned_cols=20  Identities=10%  Similarity=0.192  Sum_probs=17.7

Q ss_pred             CCCCCCCHHHHHHHHHHHHH
Q psy2054           1 MDFSKISLEEAFQLGTSVFE   20 (75)
Q Consensus         1 ~dp~~~s~~~~~r~~~~~~e   20 (75)
                      |||+..|..++++..+-..|
T Consensus        54 yDp~~isy~~LL~~f~~~hd   73 (156)
T PRK05528         54 FDPRMVSITDLMGYLFEIID   73 (156)
T ss_pred             ECCCcCCHHHHHHHHHHhCC
Confidence            69999999999999887765


No 17 
>PRK14054 methionine sulfoxide reductase A; Provisional
Probab=34.75  E-value=28  Score=22.01  Aligned_cols=20  Identities=25%  Similarity=0.257  Sum_probs=17.3

Q ss_pred             CCCCCCCHHHHHHHHHHHHH
Q psy2054           1 MDFSKISLEEAFQLGTSVFE   20 (75)
Q Consensus         1 ~dp~~~s~~~~~r~~~~~~e   20 (75)
                      +||+..|..++++..+-..|
T Consensus        61 yDp~~isy~~Ll~~f~~~hD   80 (172)
T PRK14054         61 YDPAVISYRELLELFFQIHD   80 (172)
T ss_pred             ECCCcCCHHHHHHHHHHhCC
Confidence            69999999999999877654


No 18 
>COG0225 MsrA Peptide methionine sulfoxide reductase [Posttranslational modification, protein turnover, chaperones]
Probab=33.10  E-value=23  Score=22.62  Aligned_cols=20  Identities=25%  Similarity=0.257  Sum_probs=17.0

Q ss_pred             CCCCCCCHHHHHHHHHHHHH
Q psy2054           1 MDFSKISLEEAFQLGTSVFE   20 (75)
Q Consensus         1 ~dp~~~s~~~~~r~~~~~~e   20 (75)
                      |||+..|..+++...+-+.|
T Consensus        64 yDp~~isy~~LL~~ff~ihD   83 (174)
T COG0225          64 YDPKVISYEELLEVFFEIHD   83 (174)
T ss_pred             eCCccccHHHHHHHHheecC
Confidence            69999999999998876654


No 19 
>PRK13014 methionine sulfoxide reductase A; Provisional
Probab=33.01  E-value=31  Score=22.13  Aligned_cols=20  Identities=25%  Similarity=0.265  Sum_probs=17.3

Q ss_pred             CCCCCCCHHHHHHHHHHHHH
Q psy2054           1 MDFSKISLEEAFQLGTSVFE   20 (75)
Q Consensus         1 ~dp~~~s~~~~~r~~~~~~e   20 (75)
                      |||+..|..++++..+-..|
T Consensus        66 yDp~~iSy~~LL~~Ff~~hD   85 (186)
T PRK13014         66 YDPKQVSYENLLQIFFSTHD   85 (186)
T ss_pred             ECCCcCCHHHHHHHHHHhcC
Confidence            69999999999999877654


No 20 
>PRK05428 HPr kinase/phosphorylase; Provisional
Probab=31.44  E-value=57  Score=22.58  Aligned_cols=35  Identities=23%  Similarity=0.417  Sum_probs=30.8

Q ss_pred             ceEEEEeCChhHHHHHHHHHhhhhHHHhccceecC
Q psy2054          41 KAIHIVNQPFYFNALYAIFKPFLKQKLRRRWCLDG   75 (75)
Q Consensus        41 k~ih~iN~P~~~~~~~~~~k~fl~~Kl~~Ri~~h~   75 (75)
                      .++-++..|.-...+.+.+..||.+++..+..+||
T Consensus       105 ~~ipll~t~~~t~~~i~~l~~~L~~~la~~~~iHg  139 (308)
T PRK05428        105 AGIPLLRTPLSTTRLISKLTNYLDRKLAPRTSVHG  139 (308)
T ss_pred             cCCcEEEeCCcHHHHHHHHHHHHHHHhhhcceeee
Confidence            45567788888899999999999999999999996


No 21 
>PF01625 PMSR:  Peptide methionine sulfoxide reductase;  InterPro: IPR002569 Peptide methionine sulphoxide reductase (Msr) reverses the inactivation of many proteins due to the oxidation of critical methionine residues by reducing methionine sulphoxide, Met(O), to methionine []. It is present in most living organisms, and the cognate structural gene belongs to the so-called minimum gene set [, ]. The domains: MsrA and MsrB, reduce different epimeric forms of methionine sulphoxide. This group represent MsrA, the crystal structure of which has been determined in a number of organisms. In Mycobacterium tuberculosis, the MsrA structure has been determined to 1.5 Angstrom resolution []. In contrast to the three catalytic cysteine residues found in previously characterised MsrA structures, M. tuberculosis MsrA represents a class containing only two functional cysteine residues. The overall structure shows no resemblance to the structures of MsrB (IPR002579 from INTERPRO) from other organisms; though the active sites show approximate mirror symmetry. In each case, conserved amino acid motifs mediate the stereo-specific recognition and reduction of the substrate.  In a number of pathogenic bacteria including Neisseria gonorrhoeae, the MsrA and MsrB domains are fused; the MsrA being N-terminal to MsrB. This arrangement is reversed in Treponema pallidum. In N. gonorrhoeae and Neisseria meningitidis a thioredoxin domain is fused to the N terminus. This may function to reduce the active sites of the downstream MsrA and MsrB domains. ; GO: 0016671 oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor, 0019538 protein metabolic process, 0055114 oxidation-reduction process; PDB: 2GT3_A 1FF3_B 2IEM_A 3E0M_D 2J89_A 3PIN_B 3PIM_B 3PIL_B 2L90_A 3BQF_A ....
Probab=28.64  E-value=34  Score=21.15  Aligned_cols=20  Identities=30%  Similarity=0.271  Sum_probs=15.7

Q ss_pred             CCCCCCCHHHHHHHHHHHHH
Q psy2054           1 MDFSKISLEEAFQLGTSVFE   20 (75)
Q Consensus         1 ~dp~~~s~~~~~r~~~~~~e   20 (75)
                      +||++.|..++++..+-..|
T Consensus        58 yD~~~is~~~Ll~~f~~~~d   77 (155)
T PF01625_consen   58 YDPSVISYEELLDVFFRIHD   77 (155)
T ss_dssp             EETTTS-HHHHHHHHHHHS-
T ss_pred             ECCCcccHHHHHHHHHHhcC
Confidence            58999999999999877654


No 22 
>PF04009 DUF356:  Protein of unknown function (DUF356);  InterPro: IPR007154 Members of this family are around 120 amino acids in length and are found in some archaebacteria. The function of this family is unknown. However it contains a conserved motif IHPPAH that may be involved in its function.
Probab=28.59  E-value=25  Score=20.69  Aligned_cols=36  Identities=25%  Similarity=0.384  Sum_probs=25.0

Q ss_pred             ccceEEEEeCChhHHHHHH--HHHhhhhHHHhccceec
Q psy2054          39 RVKAIHIVNQPFYFNALYA--IFKPFLKQKLRRRWCLD   74 (75)
Q Consensus        39 R~k~ih~iN~P~~~~~~~~--~~k~fl~~Kl~~Ri~~h   74 (75)
                      |..++-|.-.|+.+..-++  ++...|++++|+|...+
T Consensus        21 Rh~~l~i~gkPrii~p~~AD~i~~~ilg~~lr~~~k~A   58 (107)
T PF04009_consen   21 RHGGLKIRGKPRIIPPEYADWILEKILGEPLRKKCKAA   58 (107)
T ss_pred             HhcCCeEecCCcccChHHHHHHHHHHhCCccccccchh
Confidence            4455666666776655443  78888999999887654


No 23 
>PF13972 TetR:  Bacterial transcriptional repressor; PDB: 3RH2_A 3NNR_A.
Probab=28.33  E-value=50  Score=19.48  Aligned_cols=20  Identities=15%  Similarity=0.398  Sum_probs=15.7

Q ss_pred             hHHHHHHHHHhhhhHHHhcc
Q psy2054          51 YFNALYAIFKPFLKQKLRRR   70 (75)
Q Consensus        51 ~~~~~~~~~k~fl~~Kl~~R   70 (75)
                      .+..++++++|++++|=++.
T Consensus       125 gv~qv~~L~~PyLt~~~~~~  144 (146)
T PF13972_consen  125 GVYQVLSLLRPYLTPEGREE  144 (146)
T ss_dssp             HHHHHHHHHHCCB-HHHHHH
T ss_pred             HHHHHHHHHHHhCCHHHHhh
Confidence            56789999999999987654


No 24 
>PF15156 CLN6:  Ceroid-lipofuscinosis neuronal protein 6
Probab=26.68  E-value=55  Score=22.00  Aligned_cols=25  Identities=44%  Similarity=0.833  Sum_probs=20.8

Q ss_pred             EeCCh---hHHHHHHHHHhhhhHHHhcc
Q psy2054          46 VNQPF---YFNALYAIFKPFLKQKLRRR   70 (75)
Q Consensus        46 iN~P~---~~~~~~~~~k~fl~~Kl~~R   70 (75)
                      +|-|+   +|.+++|++.||+=-|+.+|
T Consensus        50 lNkPS~gdYfHmaYnviTPfllLKliER   77 (284)
T PF15156_consen   50 LNKPSVGDYFHMAYNVITPFLLLKLIER   77 (284)
T ss_pred             CCCCchHHHHHHHHHhhhHHHHHHHHhh
Confidence            36665   67789999999999999887


No 25 
>PRK00058 methionine sulfoxide reductase A; Provisional
Probab=23.46  E-value=58  Score=21.38  Aligned_cols=55  Identities=16%  Similarity=0.017  Sum_probs=31.4

Q ss_pred             CCCCCCCHHHHHHHHHHHHHHHhcCCcccccCc-CccccccceEEEEeCChhHHHHHHHHHh
Q psy2054           1 MDFSKISLEEAFQLGTSVFEIALLDPRLQISGA-EKIPLRVKAIHIVNQPFYFNALYAIFKP   61 (75)
Q Consensus         1 ~dp~~~s~~~~~r~~~~~~e~~l~~~~~q~~G~-~~~P~R~k~ih~iN~P~~~~~~~~~~k~   61 (75)
                      |||++.|..++++..+-..|      .++.+|- .-.--.-+...+...+.=-+.+-....-
T Consensus       103 YDp~~ISy~~LL~~Ff~~hD------Pt~~n~QG~D~G~QYRS~Ify~~~eQ~~~a~~~~~~  158 (213)
T PRK00058        103 YDPAVISYEQLLQVFWENHD------PTQGMRQGNDVGTQYRSAIYTLTPEQLAAAEASREA  158 (213)
T ss_pred             ECCccCCHHHHHHHHHHhcC------CcccCCCCCCCCcCceEEEEeCCHHHHHHHHHHHHH
Confidence            69999999999999976654      2333322 1112233455555555555555444443


No 26 
>COG1250 FadB 3-hydroxyacyl-CoA dehydrogenase [Lipid metabolism]
Probab=22.52  E-value=36  Score=23.46  Aligned_cols=20  Identities=25%  Similarity=0.245  Sum_probs=16.9

Q ss_pred             CccccccceEEEEeCChhHH
Q psy2054          34 EKIPLRVKAIHIVNQPFYFN   53 (75)
Q Consensus        34 ~~~P~R~k~ih~iN~P~~~~   53 (75)
                      -..|.|+=++|+.|.|..+.
T Consensus       130 ~~rper~iG~HFfNP~~~m~  149 (307)
T COG1250         130 LKRPERFIGLHFFNPVPLMP  149 (307)
T ss_pred             hCCchhEEEEeccCCCCcce
Confidence            56799999999999987653


No 27 
>TIGR00679 hpr-ser Hpr(Ser) kinase/phosphatase. The hprK gene of Enterococcus faecalis encodes a bifunctional enzyme: the HPr kinase/phosphatase
Probab=22.36  E-value=94  Score=21.50  Aligned_cols=35  Identities=11%  Similarity=0.299  Sum_probs=30.2

Q ss_pred             ceEEEEeCChhHHHHHHHHHhhhhHHHhccceecC
Q psy2054          41 KAIHIVNQPFYFNALYAIFKPFLKQKLRRRWCLDG   75 (75)
Q Consensus        41 k~ih~iN~P~~~~~~~~~~k~fl~~Kl~~Ri~~h~   75 (75)
                      .++-++..+.....+.+.+..||+++++.+..+|+
T Consensus       105 ~~ip~l~t~~~~~~~~~~l~~~L~~~la~~~~~hg  139 (304)
T TIGR00679       105 YQVPILKTDLFSTELSFRLETYLNEQFAPTAAIHG  139 (304)
T ss_pred             hCCcEEEeCCcHHHHHHHHHHHHHHhhccceeeee
Confidence            34567778888899999999999999999999885


No 28 
>COG4860 Uncharacterized protein conserved in archaea [Function unknown]
Probab=21.85  E-value=1.2e+02  Score=18.93  Aligned_cols=28  Identities=29%  Similarity=0.393  Sum_probs=20.5

Q ss_pred             cceEEEEeCChhHHHHHHHHHhhhhHHH
Q psy2054          40 VKAIHIVNQPFYFNALYAIFKPFLKQKL   67 (75)
Q Consensus        40 ~k~ih~iN~P~~~~~~~~~~k~fl~~Kl   67 (75)
                      +|++-+||.|...-.+|-.+-.=...|+
T Consensus         2 vkR~kviNDp~eLvpifh~~~set~rKl   29 (170)
T COG4860           2 VKRIKVINDPGELVPIFHAADSETKRKL   29 (170)
T ss_pred             CceeEEecChHHHHHHHHHcccHHHHHH
Confidence            5789999999998877766655444443


No 29 
>PLN02824 hydrolase, alpha/beta fold family protein
Probab=21.50  E-value=1.6e+02  Score=18.97  Aligned_cols=44  Identities=14%  Similarity=0.067  Sum_probs=32.9

Q ss_pred             CCCHHHHHHHHHHHHHHHhcCCcccccCc-----------CccccccceEEEEeCC
Q psy2054           5 KISLEEAFQLGTSVFEIALLDPRLQISGA-----------EKIPLRVKAIHIVNQP   49 (75)
Q Consensus         5 ~~s~~~~~r~~~~~~e~~l~~~~~q~~G~-----------~~~P~R~k~ih~iN~P   49 (75)
                      .++.+++.....-.+|.+..+. ..+-|.           ..+|.|++++.++|.+
T Consensus        82 ~~~~~~~a~~l~~~l~~l~~~~-~~lvGhS~Gg~va~~~a~~~p~~v~~lili~~~  136 (294)
T PLN02824         82 FYTFETWGEQLNDFCSDVVGDP-AFVICNSVGGVVGLQAAVDAPELVRGVMLINIS  136 (294)
T ss_pred             cCCHHHHHHHHHHHHHHhcCCC-eEEEEeCHHHHHHHHHHHhChhheeEEEEECCC
Confidence            4788888888888887665433 334554           6689999999999974


No 30 
>PRK08269 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=21.14  E-value=19  Score=24.47  Aligned_cols=16  Identities=25%  Similarity=0.393  Sum_probs=14.1

Q ss_pred             ccccccceEEEEeCCh
Q psy2054          35 KIPLRVKAIHIVNQPF   50 (75)
Q Consensus        35 ~~P~R~k~ih~iN~P~   50 (75)
                      ..|.|+-++|+.|+|.
T Consensus       128 ~~p~r~~g~Hf~~Pp~  143 (314)
T PRK08269        128 AHPERFLNAHWLNPAY  143 (314)
T ss_pred             CCcccEEEEecCCccc
Confidence            4688999999999994


No 31 
>PRK00175 metX homoserine O-acetyltransferase; Provisional
Probab=20.82  E-value=1.7e+02  Score=20.12  Aligned_cols=47  Identities=11%  Similarity=0.185  Sum_probs=35.8

Q ss_pred             CCCHHHHHHHHHHHHHHHhcCCcccccCc-----------CccccccceEEEEeCChh
Q psy2054           5 KISLEEAFQLGTSVFEIALLDPRLQISGA-----------EKIPLRVKAIHIVNQPFY   51 (75)
Q Consensus         5 ~~s~~~~~r~~~~~~e~~l~~~~~q~~G~-----------~~~P~R~k~ih~iN~P~~   51 (75)
                      .+|..++.+...-++|.+-.+...-+-|.           ..+|.|++++-++|.+..
T Consensus       126 ~~~~~~~~~~~~~~l~~l~~~~~~~lvG~S~Gg~ia~~~a~~~p~~v~~lvl~~~~~~  183 (379)
T PRK00175        126 VITIRDWVRAQARLLDALGITRLAAVVGGSMGGMQALEWAIDYPDRVRSALVIASSAR  183 (379)
T ss_pred             cCCHHHHHHHHHHHHHHhCCCCceEEEEECHHHHHHHHHHHhChHhhhEEEEECCCcc
Confidence            57899999988888887655542234555           668999999999998754


No 32 
>PF08152 GUCT:  GUCT (NUC152) domain;  InterPro: IPR012562 This is the C-terminal domain found in the RNA helicase II / Gu protein family [].; GO: 0003723 RNA binding, 0004386 helicase activity, 0005524 ATP binding, 0005634 nucleus; PDB: 2E29_A.
Probab=20.17  E-value=1.1e+02  Score=17.25  Aligned_cols=20  Identities=10%  Similarity=0.200  Sum_probs=15.0

Q ss_pred             HHHHHHHHhhhhHHHhccce
Q psy2054          53 NALYAIFKPFLKQKLRRRWC   72 (75)
Q Consensus        53 ~~~~~~~k~fl~~Kl~~Ri~   72 (75)
                      ..+|+.++-+|+++..++|.
T Consensus        32 ~y~~~~L~~~L~e~~~~~v~   51 (97)
T PF08152_consen   32 GYAWRILRRQLSEEIADKVK   51 (97)
T ss_dssp             HHHHHHHHHHS-HHHHTT-E
T ss_pred             hhHHHHHHHhcCHHHHHhhC
Confidence            36788999999999888764


Done!