Query psy2054
Match_columns 75
No_of_seqs 133 out of 725
Neff 8.0
Searched_HMMs 29240
Date Fri Aug 16 23:04:00 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy2054.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/2054hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1r5l_A Alpha-TTP, protein (alp 99.8 4.8E-20 1.7E-24 118.7 7.0 75 1-75 106-210 (262)
2 3hx3_A Retinaldehyde-binding p 99.8 3.4E-20 1.2E-24 123.4 6.5 75 1-75 165-269 (316)
3 1olm_A SEC14-like protein 2; l 99.7 2.1E-17 7.2E-22 112.4 4.9 71 5-75 114-221 (403)
4 1aua_A Phosphatidylinositol tr 99.6 2.5E-16 8.4E-21 103.4 5.5 70 6-75 135-241 (296)
5 3q8g_A CRAL-TRIO domain-contai 99.6 4E-16 1.4E-20 104.2 2.6 69 7-75 151-256 (320)
6 3pg7_A Neurofibromin; SEC lipi 91.8 0.26 8.9E-06 31.7 4.4 72 2-73 34-128 (256)
7 3peg_A Neurofibromin; SEC14 do 88.6 0.42 1.4E-05 31.4 3.4 72 2-73 53-147 (290)
8 3c0w_A Intron-encoded endonucl 74.5 14 0.00047 23.5 6.4 63 2-72 163-225 (235)
9 2oo3_A Protein involved in cat 62.6 7.2 0.00025 25.6 3.2 33 36-68 233-265 (283)
10 1jvr_A HTLV-II MA, MA, human T 59.3 6.7 0.00023 22.8 2.3 41 3-43 39-84 (137)
11 4gwb_A Peptide methionine sulf 39.8 11 0.00038 22.9 1.2 20 1-20 56-75 (168)
12 2q3l_A Uncharacterized protein 37.9 18 0.0006 20.3 1.8 32 37-68 82-113 (126)
13 1ehy_A Protein (soluble epoxid 35.6 36 0.0012 20.7 3.1 44 5-49 79-133 (294)
14 1nwa_A Peptide methionine sulf 33.3 16 0.00056 22.9 1.2 20 1-20 79-98 (203)
15 3sc0_A Methylmalonic aciduria 31.3 23 0.00079 22.8 1.7 24 40-66 50-73 (241)
16 1fvg_A Peptide methionine sulf 28.8 17 0.00057 22.7 0.7 19 1-19 101-119 (199)
17 1ff3_A Peptide methionine sulf 28.2 33 0.0011 21.5 2.0 20 1-20 100-119 (211)
18 3pim_A Peptide methionine sulf 27.6 27 0.00093 21.5 1.5 19 1-19 85-103 (187)
19 1b6g_A Haloalkane dehalogenase 27.5 1.1E+02 0.0038 18.8 4.5 44 5-49 96-150 (310)
20 2cjp_A Epoxide hydrolase; HET: 27.2 61 0.0021 19.8 3.1 46 4-49 81-138 (328)
21 3bqh_A PILB, peptide methionin 26.3 20 0.00067 22.3 0.7 20 1-20 60-79 (193)
22 2qzg_A Conserved uncharacteriz 25.3 92 0.0032 17.1 3.7 28 1-28 5-32 (94)
23 3som_A Methylmalonic aciduria 24.7 35 0.0012 22.5 1.7 24 40-66 51-74 (286)
24 3r40_A Fluoroacetate dehalogen 23.1 1.2E+02 0.004 17.7 3.8 48 5-53 84-142 (306)
25 3kda_A CFTR inhibitory factor 22.7 1.2E+02 0.0041 17.8 3.8 46 4-49 75-131 (301)
26 2cs3_A Protein C14ORF4, MY039 22.6 12 0.00041 20.3 -0.7 18 34-51 19-36 (93)
27 2j89_A Methionine sulfoxide re 22.2 34 0.0012 22.3 1.2 20 1-20 152-171 (261)
28 2qvb_A Haloalkane dehalogenase 22.1 1.1E+02 0.0039 17.7 3.6 46 5-50 78-134 (297)
29 3fsg_A Alpha/beta superfamily 21.9 1.1E+02 0.0038 17.5 3.5 45 6-50 69-124 (272)
30 3om8_A Probable hydrolase; str 21.3 1.3E+02 0.0044 17.9 3.8 46 4-50 72-128 (266)
31 2xua_A PCAD, 3-oxoadipate ENOL 21.2 1.4E+02 0.0047 17.6 3.9 46 4-50 71-127 (266)
32 3hss_A Putative bromoperoxidas 20.4 1.4E+02 0.0048 17.4 4.9 50 3-53 88-148 (293)
No 1
>1r5l_A Alpha-TTP, protein (alpha-tocopherol transfer protein); ataxia with vitamin E deficiency, transport protein; HET: MSE VIV; 1.50A {Homo sapiens} SCOP: a.5.3.1 c.13.1.1 PDB: 1oiz_A* 1oip_A*
Probab=99.81 E-value=4.8e-20 Score=118.72 Aligned_cols=75 Identities=28% Similarity=0.608 Sum_probs=70.3
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHhcCCcccccCc------------------------------CccccccceEEEEeCCh
Q psy2054 1 MDFSKISLEEAFQLGTSVFEIALLDPRLQISGA------------------------------EKIPLRVKAIHIVNQPF 50 (75)
Q Consensus 1 ~dp~~~s~~~~~r~~~~~~e~~l~~~~~q~~G~------------------------------~~~P~R~k~ih~iN~P~ 50 (75)
+||+.++..+++|+..+++|.++.+++.|+.|. ++||.|++++|+||+|+
T Consensus 106 ~d~~~~~~~~~~r~~~~~~E~~~~~~~~~~~g~~~I~D~~g~s~~~~~~~~~~~~k~~~~~~q~~yPerl~~i~ivN~P~ 185 (262)
T 1r5l_A 106 WDPKVFTAYDVFRVSLITSELIVQEVETQRNGIKAIFDLEGWQFSHAFQITPSVAKKIAAVLTDSFPLKVRGIHLINEPV 185 (262)
T ss_dssp CCTTTSCHHHHHHHHHHHHHHHTTSHHHHHHCEEEEEECTTCCHHHHHHCCHHHHHHHHHHHHTSSSSCEEEEEEESCCG
T ss_pred cCcccCCHHHHHHHHHHHHHHHHhChhhcccceEEEEECCCCCHHHHhccCHHHHHHHHHHHHhhCChhhceEEEEeCCH
Confidence 689999999999999999999998887776665 99999999999999999
Q ss_pred hHHHHHHHHHhhhhHHHhccceecC
Q psy2054 51 YFNALYAIFKPFLKQKLRRRWCLDG 75 (75)
Q Consensus 51 ~~~~~~~~~k~fl~~Kl~~Ri~~h~ 75 (75)
+|+.+|+++||||++|+++||++|+
T Consensus 186 ~f~~~~~~vkpfl~~~t~~Ki~~~~ 210 (262)
T 1r5l_A 186 IFHAVFSMIKPFLTEKIKERIHMHG 210 (262)
T ss_dssp GGHHHHHHHGGGSCHHHHTTEEECC
T ss_pred HHHHHHHHHHHhcCHHHHhheEEeC
Confidence 9999999999999999999999985
No 2
>3hx3_A Retinaldehyde-binding protein 1; lipid transfer protein, 11-CIS-retinal, bothnia dystrophy, acetylation, cytoplasm, disease mutation; HET: RET; 1.69A {Homo sapiens} PDB: 3hy5_A*
Probab=99.81 E-value=3.4e-20 Score=123.42 Aligned_cols=75 Identities=36% Similarity=0.607 Sum_probs=70.8
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHhcCCcccccCc------------------------------CccccccceEEEEeCCh
Q psy2054 1 MDFSKISLEEAFQLGTSVFEIALLDPRLQISGA------------------------------EKIPLRVKAIHIVNQPF 50 (75)
Q Consensus 1 ~dp~~~s~~~~~r~~~~~~e~~l~~~~~q~~G~------------------------------~~~P~R~k~ih~iN~P~ 50 (75)
|||++++.++++|+..+++|.++.+++.|+.|+ ++||.|++++|+||+|+
T Consensus 165 ~d~~~~~~~~~~r~~~~~lE~~l~~~~~~v~g~v~IiD~~g~sl~~~~~~~~~~~k~~~~~lq~~YPerL~~i~iiN~P~ 244 (316)
T 3hx3_A 165 WQSQEITFDEILQAYCFILEKLLENEETQINGFCIIENFKGFTMQQAASLRTSDLRKMVDMLQDSFPAWFKAIHFIHQPW 244 (316)
T ss_dssp CCTTTSCHHHHHHHHHHHHHHHTTSHHHHHHCEEEEEECTTCCHHHHHHCCHHHHHHHHHHHHTTSTTTEEEEEEESCCT
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHhcccCCcceEEEEEECCCCCHHHhccCChHHHHHHHHHHHHhhhhhhceEEEEeCCH
Confidence 689999999999999999999998887777776 99999999999999999
Q ss_pred hHHHHHHHHHhhhhHHHhccceecC
Q psy2054 51 YFNALYAIFKPFLKQKLRRRWCLDG 75 (75)
Q Consensus 51 ~~~~~~~~~k~fl~~Kl~~Ri~~h~ 75 (75)
+|+.+|+++||||++|+++||++||
T Consensus 245 ~f~~i~~ivkpfl~~kt~~KI~~~~ 269 (316)
T 3hx3_A 245 YFTTTYNVVKPFLKSKLLERVFVHG 269 (316)
T ss_dssp THHHHHHHHGGGCCHHHHTTEEEEE
T ss_pred HHHHHHHHHHHhCCHHhhhheEEeC
Confidence 9999999999999999999999984
No 3
>1olm_A SEC14-like protein 2; lipid-binding protein, cholesterol biosynthesis, oxidized vitamin E, lipid-binding, transport, transcription regulation; HET: VTQ; 1.95A {Homo sapiens} SCOP: a.5.3.1 b.132.1.1 c.13.1.1 PDB: 1o6u_A* 1olm_E*
Probab=99.68 E-value=2.1e-17 Score=112.42 Aligned_cols=71 Identities=24% Similarity=0.408 Sum_probs=63.9
Q ss_pred CCCHHHHHHHHHHHHHHHhcCCccc-------ccCc------------------------------CccccccceEEEEe
Q psy2054 5 KISLEEAFQLGTSVFEIALLDPRLQ-------ISGA------------------------------EKIPLRVKAIHIVN 47 (75)
Q Consensus 5 ~~s~~~~~r~~~~~~e~~l~~~~~q-------~~G~------------------------------~~~P~R~k~ih~iN 47 (75)
.++.++++|+..+++|.++.+...| +.|+ ++||.|++++|+||
T Consensus 114 ~~~~~~~~r~~~~~~E~~~~~~~~~s~~~g~~v~~~~~I~D~~g~sl~~~~~~~~~~~k~~~~~lq~~YPerl~~i~iiN 193 (403)
T 1olm_A 114 SASKQDLLRTKMRECELLLQECAHQTTKLGRKVETITIIYDCEGLGLKHLWKPAVEAYGEFLCMFEENYPETLKRLFVVK 193 (403)
T ss_dssp TSCHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCCCEEEEEECTTCCGGGGCHHHHHHHHHHHHHHHHHSTTCEEEEEEES
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHhhHHhhCCcccceEEEEECCCCCHHHHhhHHHHHHHHHHHHHHhhCcHhhCeEEEEe
Confidence 5899999999999999998876543 3343 99999999999999
Q ss_pred CChhHHHHHHHHHhhhhHHHhccceecC
Q psy2054 48 QPFYFNALYAIFKPFLKQKLRRRWCLDG 75 (75)
Q Consensus 48 ~P~~~~~~~~~~k~fl~~Kl~~Ri~~h~ 75 (75)
+|++|+.+|+++||||++|+++||++|+
T Consensus 194 ~P~~f~~i~~~ikpfl~~~t~~KI~~~~ 221 (403)
T 1olm_A 194 APKLFPVAYNLIKPFLSEDTRKKIMVLG 221 (403)
T ss_dssp CCTTHHHHHHHHGGGSCHHHHHTEEECC
T ss_pred CCHHHHHHHHHHHhhcCHhhhceEEEEC
Confidence 9999999999999999999999999985
No 4
>1aua_A Phosphatidylinositol transfer protein SEC14P; phospholipid-binding protein, peripheral golgi membrane protein, phospholipid exchange; HET: BOG; 2.50A {Saccharomyces cerevisiae} SCOP: a.5.3.1 c.13.1.1
Probab=99.63 E-value=2.5e-16 Score=103.35 Aligned_cols=70 Identities=24% Similarity=0.342 Sum_probs=59.9
Q ss_pred CCHHHHHHHHHHHHHHHhcCCc--------ccc---------cCc--------------------CccccccceEEEEeC
Q psy2054 6 ISLEEAFQLGTSVFEIALLDPR--------LQI---------SGA--------------------EKIPLRVKAIHIVNQ 48 (75)
Q Consensus 6 ~s~~~~~r~~~~~~e~~l~~~~--------~q~---------~G~--------------------~~~P~R~k~ih~iN~ 48 (75)
.+.++++|...+.+|.+++... .++ .|. ++||.|++++|+||+
T Consensus 135 ~~~~~~~~~~~~~~E~~~~~~~~~~s~~~g~~v~~~~~I~D~~g~s~~~~~~~~~~~k~~~~~~q~~YPerl~~i~iiN~ 214 (296)
T 1aua_A 135 TSEERMLKNLVWEYESVVQYRLPACSRAAGHLVETSCTIMDLKGISISSAYSVMSYVREASYISQNYYPERMGKFYIINA 214 (296)
T ss_dssp CCHHHHHHHHHHHHHHHHHTHHHHHHHHHTSCCCCEEEEEECTTCCHHHHHHHHHHHHHHHHHHHHHSTTCEEEEEEESC
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCceeEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHhHHHhhCeEEEECc
Confidence 5889999999999998775421 112 222 899999999999999
Q ss_pred ChhHHHHHHHHHhhhhHHHhccceecC
Q psy2054 49 PFYFNALYAIFKPFLKQKLRRRWCLDG 75 (75)
Q Consensus 49 P~~~~~~~~~~k~fl~~Kl~~Ri~~h~ 75 (75)
|++|+.+|+++||||++|+++||++|+
T Consensus 215 P~~f~~~~~iikpfl~~~t~~KI~~~~ 241 (296)
T 1aua_A 215 PFGFSTAFRLFKPFLDPVTVSKIFILG 241 (296)
T ss_dssp CHHHHHHHHHHGGGSCHHHHTTEEECC
T ss_pred hHHHHHHHHHHHhhcCHhhcceEEEeC
Confidence 999999999999999999999999985
No 5
>3q8g_A CRAL-TRIO domain-containing protein YKL091C; string motif, signaling protein, directed evoluti SEC14, phospholipid transporter, lipid; HET: PEE; 1.80A {Saccharomyces cerevisiae} PDB: 3b7n_A* 3b74_A* 3b7q_A* 3b7z_A*
Probab=99.58 E-value=4e-16 Score=104.15 Aligned_cols=69 Identities=19% Similarity=0.328 Sum_probs=59.5
Q ss_pred CHHHHHHHHHHHHHHHhcC---CcccccC--------------c--------------------CccccccceEEEEeCC
Q psy2054 7 SLEEAFQLGTSVFEIALLD---PRLQISG--------------A--------------------EKIPLRVKAIHIVNQP 49 (75)
Q Consensus 7 s~~~~~r~~~~~~e~~l~~---~~~q~~G--------------~--------------------~~~P~R~k~ih~iN~P 49 (75)
+.++++|...+.+|.+++. +..|..| . ++||.|++++|+||+|
T Consensus 151 ~~~~~lr~lv~~~E~~~~~~l~~~s~~~G~~ve~~~~IiD~~g~sl~~~~~~~~~~k~~~~~lq~~YPerl~~i~iiN~P 230 (320)
T 3q8g_A 151 TEKQMLRNLVKEYELFATYRVPACSRRAGYLIETSCTVLDLKGISLSNAYHVLSYIKDVADISQNYYPERMGKFYIIHSP 230 (320)
T ss_dssp CHHHHHHHHHHHHHHHHHTHHHHHHHHHTSCCCCEEEEEECTTCCHHHHHHTHHHHHHHHHHHHHHSTTCEEEEEEESCC
T ss_pred CHHHHHHHHHHHHHHHHHHhhhHHHHhcCCCcceeEEEEECCCCCHHHHHHHHHHHHHHHHHHHhhCchhhceEEEECCC
Confidence 7788999999999988754 1223333 2 8999999999999999
Q ss_pred hhHHHHHHHHHhhhhHHHhccceecC
Q psy2054 50 FYFNALYAIFKPFLKQKLRRRWCLDG 75 (75)
Q Consensus 50 ~~~~~~~~~~k~fl~~Kl~~Ri~~h~ 75 (75)
++|+.+|+++||||++|+++||++|+
T Consensus 231 ~~f~~~~~~ikpfl~~~t~~KI~~~~ 256 (320)
T 3q8g_A 231 FGFSTMFKMVKPFLDPVTVSKIFILG 256 (320)
T ss_dssp TTHHHHHTTTGGGSCHHHHHTEEECC
T ss_pred HHHHHHHHHHHHhCCHHHhhhEEEeC
Confidence 99999999999999999999999985
No 6
>3pg7_A Neurofibromin; SEC lipid binding domain, PH domain, lipid binding protein; HET: PTY; 2.19A {Homo sapiens} PDB: 2e2x_A* 3p7z_A* 2d4q_A*
Probab=91.82 E-value=0.26 Score=31.70 Aligned_cols=72 Identities=11% Similarity=-0.037 Sum_probs=47.6
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhcCCccc---ccCc-------------------CccccccceEEEEeCChhHHHHHHH-
Q psy2054 2 DFSKISLEEAFQLGTSVFEIALLDPRLQ---ISGA-------------------EKIPLRVKAIHIVNQPFYFNALYAI- 58 (75)
Q Consensus 2 dp~~~s~~~~~r~~~~~~e~~l~~~~~q---~~G~-------------------~~~P~R~k~ih~iN~P~~~~~~~~~- 58 (75)
+++..+.+.++.....++|.+...+-.- ..|. ..+.-.+++++++|++.++...+..
T Consensus 34 ~~~~~D~e~Ll~~vl~tl~~~~~~~y~lV~d~T~~~~~n~p~~~wl~~~~~llp~~~~kNlk~~Yivnpt~~~k~~~~~~ 113 (256)
T 3pg7_A 34 KTGQINGDLLIYHVLLTLKPYYAKPYEIVVDLTHTGPSNRFKTDFLSKWFVVFPGFAYDNVSAVYIYNCNSWVREYTKYH 113 (256)
T ss_dssp CBTTBCHHHHHHHHHHHHTTTTTSCEEEEEECTTCCGGGCCCHHHHHHTTTSSCHHHHHTEEEEEEESCCHHHHHHHHHT
T ss_pred CCCCCCHHHHHHHHHHHHHHhcCCCeEEEEECCCCCcccCCcHHHHHHHHHHcCHHHHhcccEEEEECCCHHHHHHHHHH
Confidence 4455667777777777777655433221 1333 5566788999999999999976654
Q ss_pred HHhhhhHHHhcccee
Q psy2054 59 FKPFLKQKLRRRWCL 73 (75)
Q Consensus 59 ~k~fl~~Kl~~Ri~~ 73 (75)
.++|.+.|..+++++
T Consensus 114 ~~~~~~~k~~~Ki~f 128 (256)
T 3pg7_A 114 ERLLTGLKGSKRLVF 128 (256)
T ss_dssp HHHHTTTTTCTTEEE
T ss_pred hccccccccCCcEEE
Confidence 566666566666654
No 7
>3peg_A Neurofibromin; SEC14 domain, pleckstrin homology domain, PH domain, phosphatidylethanolamin binding, lipid binding, lipid bindi protein; HET: PEV; 2.52A {Homo sapiens}
Probab=88.64 E-value=0.42 Score=31.41 Aligned_cols=72 Identities=11% Similarity=-0.052 Sum_probs=48.7
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhcCCccc---ccCc-------------------CccccccceEEEEeCChhHHHHH-HH
Q psy2054 2 DFSKISLEEAFQLGTSVFEIALLDPRLQ---ISGA-------------------EKIPLRVKAIHIVNQPFYFNALY-AI 58 (75)
Q Consensus 2 dp~~~s~~~~~r~~~~~~e~~l~~~~~q---~~G~-------------------~~~P~R~k~ih~iN~P~~~~~~~-~~ 58 (75)
+++..+.+.++-..+.++|.....+-.- ..|. .-++-++++++++|++.++.... ..
T Consensus 53 ~~~~~D~e~Lly~il~tl~~~~~~~y~lV~D~T~~~~~n~p~~~~l~~~~~llp~~~~kNl~~~Yi~np~~~f~~~~k~~ 132 (290)
T 3peg_A 53 KTGQINGDLLIYHVLLTLKPYYAKPYEIVVDLTHTGPSNRFKTDFLSKWFVVFPGFAYDNVSAVYIYNCNSWVREYTKYH 132 (290)
T ss_dssp CBTTBCHHHHHHHHHHHHTTTTTSCEEEEEECTTCCGGGCCCHHHHGGGGTSSCHHHHHTEEEEEEESCCHHHHHHHHHT
T ss_pred CccCCCHHHHHHHHHHHHHHhcCCCeEEEEEcCCCCccCCChHHHHHHHHHHCCHHHHhhccEEEEECCCHHHHHHHHHH
Confidence 4455666667766666666554332221 1332 66778899999999999998865 46
Q ss_pred HHhhhhHHHhcccee
Q psy2054 59 FKPFLKQKLRRRWCL 73 (75)
Q Consensus 59 ~k~fl~~Kl~~Ri~~ 73 (75)
.++|-+.|..+++.+
T Consensus 133 ~~~~~~~k~~~k~v~ 147 (290)
T 3peg_A 133 ERLLTGLKGSKRLVF 147 (290)
T ss_dssp TTTGGGGTTCTTEEE
T ss_pred HhhhhhhhcCceEEE
Confidence 678887787777654
No 8
>3c0w_A Intron-encoded endonuclease I-SCEI; endonuclease, homing, ladlidadg, catalytic mechanism, metal binding; HET: DNA; 2.20A {Saccharomyces cerevisiae} PDB: 1r7m_A* 3c0x_A* 3ool_A 3oor_A
Probab=74.54 E-value=14 Score=23.45 Aligned_cols=63 Identities=17% Similarity=0.272 Sum_probs=46.8
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhcCCcccccCcCccccccceEEEEeCChhHHHHHHHHHhhhhHHHhccce
Q psy2054 2 DFSKISLEEAFQLGTSVFEIALLDPRLQISGAEKIPLRVKAIHIVNQPFYFNALYAIFKPFLKQKLRRRWC 72 (75)
Q Consensus 2 dp~~~s~~~~~r~~~~~~e~~l~~~~~q~~G~~~~P~R~k~ih~iN~P~~~~~~~~~~k~fl~~Kl~~Ri~ 72 (75)
..+.||.+|..+...++.+..-.+...+..| + +-...+ ...-++.+.++++|++.+.+.-++.
T Consensus 163 ~T~sFt~~ev~~L~~~L~~kf~L~~~i~~~~-~------~y~Iyi-~~~s~~~f~~lI~PYi~psM~YKl~ 225 (235)
T 3c0w_A 163 NTQSFTFEEVEYLVKGLRNKFQLNCYVKINK-N------KPIIYI-DSMSYLIFYNLIKPYLIPQMMYKLP 225 (235)
T ss_dssp CCTTSCHHHHHHHHHHHHHHHCCCEEEEEET-T------EEEEEE-CGGGHHHHHHHHGGGCCGGGGGGCC
T ss_pred EeCCCCHHHHHHHHHHHHHhcCeEEEEEecC-C------EEEEEE-eHHHHHHHHHHhhhhccHhHHhhcC
Confidence 4678999999999988888776676666555 1 112233 3556899999999999998887764
No 9
>2oo3_A Protein involved in catabolism of external DNA; structural genomics, unknown function, PSI-2, protein structure initiative; 2.00A {Legionella pneumophila subsp} SCOP: c.66.1.59
Probab=62.60 E-value=7.2 Score=25.57 Aligned_cols=33 Identities=15% Similarity=0.223 Sum_probs=28.1
Q ss_pred cccccceEEEEeCChhHHHHHHHHHhhhhHHHh
Q psy2054 36 IPLRVKAIHIVNQPFYFNALYAIFKPFLKQKLR 68 (75)
Q Consensus 36 ~P~R~k~ih~iN~P~~~~~~~~~~k~fl~~Kl~ 68 (75)
..+.=.|+.+||.|+-++-.+.-+.|+|.+.+.
T Consensus 233 ~gm~gsGm~viNpP~~l~~~~~~~l~~l~~~l~ 265 (283)
T 2oo3_A 233 EGMTGCGLWIINPPYTFPSEIKLVLETLTTYFN 265 (283)
T ss_dssp CSCCEEEEEEESCCTTHHHHHHHHHHHHHHHSS
T ss_pred CCcCceeEEEECCchhHHHHHHHHHHHHHHHhC
Confidence 455557899999999999999999999988765
No 10
>1jvr_A HTLV-II MA, MA, human T-cell leukemia virus type II matrix protein; HTLV-II matrix protein, retroviral matrix protein; NMR {Human t-lymphotropic virus 2} SCOP: a.61.1.2
Probab=59.33 E-value=6.7 Score=22.78 Aligned_cols=41 Identities=12% Similarity=0.116 Sum_probs=27.0
Q ss_pred CCCCCHHHHHHHHHHHHHHHh--cCCccc-ccCc--CccccccceE
Q psy2054 3 FSKISLEEAFQLGTSVFEIAL--LDPRLQ-ISGA--EKIPLRVKAI 43 (75)
Q Consensus 3 p~~~s~~~~~r~~~~~~e~~l--~~~~~q-~~G~--~~~P~R~k~i 43 (75)
|+.|++.++-|+.-+.++.=. .--+.. ..|. ++||.|+.+|
T Consensus 39 PS~fDFhqLr~fLklAl~TPvWlnPI~YSlLA~LiPkgyPGRv~eI 84 (137)
T 1jvr_A 39 PSDFDFQQLRRFLKLALKTPIWLNPIDYSLLASLIPKGYPGRVVEI 84 (137)
T ss_dssp CSTTTHHHHHHHHHHHHTCTTSTTTTCTTTHHHHSCSSCSTTHHHH
T ss_pred CCcccHHHHHHHHHHHhcCcccccchhHHHHHhhccCCCCchHHHH
Confidence 788999999999888776411 111111 1232 9999998775
No 11
>4gwb_A Peptide methionine sulfoxide reductase MSRA 3; structural genomics, protein structure initiative, nysgrc, R PSI-biology; 1.20A {Sinorhizobium meliloti}
Probab=39.82 E-value=11 Score=22.87 Aligned_cols=20 Identities=20% Similarity=0.298 Sum_probs=17.1
Q ss_pred CCCCCCCHHHHHHHHHHHHH
Q psy2054 1 MDFSKISLEEAFQLGTSVFE 20 (75)
Q Consensus 1 ~dp~~~s~~~~~r~~~~~~e 20 (75)
|||++.|..++++..+-+.|
T Consensus 56 yDp~~isy~~LL~~F~~~hD 75 (168)
T 4gwb_A 56 FDPERISYRRILELFFQIHD 75 (168)
T ss_dssp ECTTTCCHHHHHHHHHHHSC
T ss_pred ECCCCCCHHHHHHHHHhhcC
Confidence 69999999999999876544
No 12
>2q3l_A Uncharacterized protein; SPOIIAA-like fold, structural genomics, joint center for STR genomics, JCSG, protein structure initiative; HET: MSE; 2.25A {Shewanella loihica pv-4} SCOP: c.13.2.2
Probab=37.92 E-value=18 Score=20.35 Aligned_cols=32 Identities=13% Similarity=0.044 Sum_probs=27.7
Q ss_pred ccccceEEEEeCChhHHHHHHHHHhhhhHHHh
Q psy2054 37 PLRVKAIHIVNQPFYFNALYAIFKPFLKQKLR 68 (75)
Q Consensus 37 P~R~k~ih~iN~P~~~~~~~~~~k~fl~~Kl~ 68 (75)
--.+.++-+|-.+.+...+..+..+|++.++|
T Consensus 82 ~~~~~RiAvV~d~~W~~~~~~~~~~~~~~evk 113 (126)
T 2q3l_A 82 GKEFKRVAIIGQGELQEWATRVANWFTPGEFK 113 (126)
T ss_dssp GGGEEEEEEECCSHHHHHHHHHHHHHCSSEEE
T ss_pred HhcCCEEEEEcChHHHHHHHHHHhhccCCcee
Confidence 36689999999999999999999999876543
No 13
>1ehy_A Protein (soluble epoxide hydrolase); alpha/beta hydrolase fold, epoxide degradation, epichlorohydrin; 2.10A {Agrobacterium tumefaciens} SCOP: c.69.1.11
Probab=35.56 E-value=36 Score=20.71 Aligned_cols=44 Identities=20% Similarity=0.207 Sum_probs=32.2
Q ss_pred CCCHHHHHHHHHHHHHHHhcCCcccccCc-----------CccccccceEEEEeCC
Q psy2054 5 KISLEEAFQLGTSVFEIALLDPRLQISGA-----------EKIPLRVKAIHIVNQP 49 (75)
Q Consensus 5 ~~s~~~~~r~~~~~~e~~l~~~~~q~~G~-----------~~~P~R~k~ih~iN~P 49 (75)
.++..++..-..-++|.+-.+. .-+-|. ..+|.|++++.+++.|
T Consensus 79 ~~~~~~~a~dl~~ll~~l~~~~-~~lvGhS~Gg~va~~~A~~~P~~v~~lvl~~~~ 133 (294)
T 1ehy_A 79 KYSLDKAADDQAALLDALGIEK-AYVVGHDFAAIVLHKFIRKYSDRVIKAAIFDPI 133 (294)
T ss_dssp GGCHHHHHHHHHHHHHHTTCCC-EEEEEETHHHHHHHHHHHHTGGGEEEEEEECCS
T ss_pred CcCHHHHHHHHHHHHHHcCCCC-EEEEEeChhHHHHHHHHHhChhheeEEEEecCC
Confidence 5888888888777777654333 324454 6689999999999963
No 14
>1nwa_A Peptide methionine sulfoxide reductase MSRA; oxidoreductase, product complex, structural genomics, PSI, protein structure initiative; 1.50A {Mycobacterium tuberculosis} SCOP: d.58.28.1
Probab=33.29 E-value=16 Score=22.86 Aligned_cols=20 Identities=5% Similarity=0.094 Sum_probs=16.9
Q ss_pred CCCCCCCHHHHHHHHHHHHH
Q psy2054 1 MDFSKISLEEAFQLGTSVFE 20 (75)
Q Consensus 1 ~dp~~~s~~~~~r~~~~~~e 20 (75)
|||++.|..++++..+-..|
T Consensus 79 yDp~~iSy~~LL~~Ff~~hD 98 (203)
T 1nwa_A 79 FDPTVTDYRTLLEFFFQIHD 98 (203)
T ss_dssp ECTTTCCHHHHHHHHHHHSC
T ss_pred ECCCcCCHHHHHHHHHHhcC
Confidence 69999999999999876544
No 15
>3sc0_A Methylmalonic aciduria and homocystinuria type C; mmachc, CBLC, cobalamin, flavin, glutathione, flavin reducta oxidoreductase, maturase; HET: COB; 1.95A {Homo sapiens} PDB: 3sbz_A 3sby_A
Probab=31.29 E-value=23 Score=22.78 Aligned_cols=24 Identities=29% Similarity=0.562 Sum_probs=18.3
Q ss_pred cceEEEEeCChhHHHHHHHHHhhhhHH
Q psy2054 40 VKAIHIVNQPFYFNALYAIFKPFLKQK 66 (75)
Q Consensus 40 ~k~ih~iN~P~~~~~~~~~~k~fl~~K 66 (75)
-=++-++|.|.+|+.+ ++||+..+
T Consensus 50 tLA~lVlsTp~mfe~a---f~p~l~~~ 73 (241)
T 3sc0_A 50 TLAFLVLSTPAMFDRA---LKPFLQSC 73 (241)
T ss_dssp EEEEEEEECTTHHHHT---HHHHTTST
T ss_pred cEEEEEecCHHHHHHH---HHHHHHhh
Confidence 3478999999999866 47777543
No 16
>1fvg_A Peptide methionine sulfoxide reductase; oxidoreductase; 1.60A {Bos taurus} SCOP: d.58.28.1 PDB: 1fva_A 2l90_A*
Probab=28.81 E-value=17 Score=22.71 Aligned_cols=19 Identities=21% Similarity=0.146 Sum_probs=16.1
Q ss_pred CCCCCCCHHHHHHHHHHHH
Q psy2054 1 MDFSKISLEEAFQLGTSVF 19 (75)
Q Consensus 1 ~dp~~~s~~~~~r~~~~~~ 19 (75)
|||++.|..++++..+-..
T Consensus 101 yDp~~isy~~LL~~F~~~h 119 (199)
T 1fvg_A 101 FQPEHISFEELLKVFWENH 119 (199)
T ss_dssp ECTTTSCHHHHHHHHHHTS
T ss_pred ECCCcCCHHHHHHHHHHhc
Confidence 6999999999999886543
No 17
>1ff3_A Peptide methionine sulfoxide reductase; alpha beta roll, PMSR, MSRA, oxidoreductase; 1.90A {Escherichia coli} SCOP: d.58.28.1 PDB: 2gt3_A 2iem_A
Probab=28.23 E-value=33 Score=21.55 Aligned_cols=20 Identities=30% Similarity=0.167 Sum_probs=16.4
Q ss_pred CCCCCCCHHHHHHHHHHHHH
Q psy2054 1 MDFSKISLEEAFQLGTSVFE 20 (75)
Q Consensus 1 ~dp~~~s~~~~~r~~~~~~e 20 (75)
|||++.|..++++..+-..|
T Consensus 100 yDp~~isy~~LL~~F~~~hD 119 (211)
T 1ff3_A 100 YDPSVISYEQLLQVFWENHD 119 (211)
T ss_dssp ECTTTSCHHHHHHHHHHSSC
T ss_pred ECCCcCCHHHHHHHHHHhcC
Confidence 69999999999998765443
No 18
>3pim_A Peptide methionine sulfoxide reductase; methionine-S-sulfoxide reductase, oxidoreductase; 1.90A {Saccharomyces cerevisiae} PDB: 3pil_A 3pin_B
Probab=27.58 E-value=27 Score=21.55 Aligned_cols=19 Identities=16% Similarity=0.090 Sum_probs=15.8
Q ss_pred CCCCCCCHHHHHHHHHHHH
Q psy2054 1 MDFSKISLEEAFQLGTSVF 19 (75)
Q Consensus 1 ~dp~~~s~~~~~r~~~~~~ 19 (75)
|||++.|..++++..+-..
T Consensus 85 yDp~~isy~~LL~~Ff~~h 103 (187)
T 3pim_A 85 YNPKVITLRELTDFFFRIH 103 (187)
T ss_dssp ECTTTSCHHHHHHHHTTSS
T ss_pred ECCccCCHHHHHHHHHHhc
Confidence 6999999999998876543
No 19
>1b6g_A Haloalkane dehalogenase; hydrolase, alpha/beta-hydrolase; 1.15A {Xanthobacter autotrophicus} SCOP: c.69.1.8 PDB: 1be0_A 1cij_A 2yxp_X 1edd_A 1edb_A 2dhc_A 2dhe_A 2eda_A 2edc_A 2had_A 1ede_A 2pky_X 1bez_A 1bee_A 2dhd_A* 1hde_A
Probab=27.50 E-value=1.1e+02 Score=18.80 Aligned_cols=44 Identities=18% Similarity=0.134 Sum_probs=33.5
Q ss_pred CCCHHHHHHHHHHHHHHHhcCCcccccCc-----------CccccccceEEEEeCC
Q psy2054 5 KISLEEAFQLGTSVFEIALLDPRLQISGA-----------EKIPLRVKAIHIVNQP 49 (75)
Q Consensus 5 ~~s~~~~~r~~~~~~e~~l~~~~~q~~G~-----------~~~P~R~k~ih~iN~P 49 (75)
.|+.+++..-..-++|.+-.+. .-+-|. ..+|.|++++.++|.+
T Consensus 96 ~y~~~~~a~dl~~ll~~l~~~~-~~lvGhS~Gg~va~~~A~~~P~rv~~Lvl~~~~ 150 (310)
T 1b6g_A 96 DYTFEFHRNFLLALIERLDLRN-ITLVVQDWGGFLGLTLPMADPSRFKRLIIMNAX 150 (310)
T ss_dssp GCCHHHHHHHHHHHHHHHTCCS-EEEEECTHHHHHHTTSGGGSGGGEEEEEEESCC
T ss_pred CcCHHHHHHHHHHHHHHcCCCC-EEEEEcChHHHHHHHHHHhChHhheEEEEeccc
Confidence 5888888888888888765443 334554 6789999999999974
No 20
>2cjp_A Epoxide hydrolase; HET: PG4 VPR; 1.95A {Solanum tuberosum} PDB: 3cxu_A*
Probab=27.15 E-value=61 Score=19.84 Aligned_cols=46 Identities=17% Similarity=0.102 Sum_probs=32.1
Q ss_pred CCCCHHHHHHHHHHHHHHHhc-CCcccccCc-----------CccccccceEEEEeCC
Q psy2054 4 SKISLEEAFQLGTSVFEIALL-DPRLQISGA-----------EKIPLRVKAIHIVNQP 49 (75)
Q Consensus 4 ~~~s~~~~~r~~~~~~e~~l~-~~~~q~~G~-----------~~~P~R~k~ih~iN~P 49 (75)
..++..++..-..-++|.+-. .+..-+-|. ..+|.|++++.+++.|
T Consensus 81 ~~~~~~~~a~dl~~~l~~l~~~~~~~~lvGhS~Gg~ia~~~A~~~p~~v~~lvl~~~~ 138 (328)
T 2cjp_A 81 SKFSILHLVGDVVALLEAIAPNEEKVFVVAHDWGALIAWHLCLFRPDKVKALVNLSVH 138 (328)
T ss_dssp GGGSHHHHHHHHHHHHHHHCTTCSSEEEEEETHHHHHHHHHHHHCGGGEEEEEEESCC
T ss_pred ccccHHHHHHHHHHHHHHhcCCCCCeEEEEECHHHHHHHHHHHhChhheeEEEEEccC
Confidence 357888888777777777641 222334444 6789999999999975
No 21
>3bqh_A PILB, peptide methionine sulfoxide reductase MSRA/MSRB; methionine sulfoxide reductase A, oxidized form, elect transport; 1.95A {Neisseria meningitidis} PDB: 3bqe_A 3bqf_A* 3bqg_A
Probab=26.26 E-value=20 Score=22.28 Aligned_cols=20 Identities=30% Similarity=0.381 Sum_probs=16.8
Q ss_pred CCCCCCCHHHHHHHHHHHHH
Q psy2054 1 MDFSKISLEEAFQLGTSVFE 20 (75)
Q Consensus 1 ~dp~~~s~~~~~r~~~~~~e 20 (75)
|||++.|..++++..+-..|
T Consensus 60 yDp~~isy~~LL~~f~~~hD 79 (193)
T 3bqh_A 60 YDADKLSLDDILQYFFRVVD 79 (193)
T ss_dssp EETTTCCHHHHHHHHHHHSC
T ss_pred ECCCcCCHHHHHHHHHHhcC
Confidence 69999999999998876554
No 22
>2qzg_A Conserved uncharacterized archaeal protein; unknown function protein, structu genomics, PSI-2, protein structure initiative; 2.09A {Methanococcus maripaludis S2} SCOP: a.29.14.1
Probab=25.28 E-value=92 Score=17.09 Aligned_cols=28 Identities=18% Similarity=0.203 Sum_probs=22.3
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHhcCCcc
Q psy2054 1 MDFSKISLEEAFQLGTSVFEIALLDPRL 28 (75)
Q Consensus 1 ~dp~~~s~~~~~r~~~~~~e~~l~~~~~ 28 (75)
|..++...++.++-+..++|....|..+
T Consensus 5 ~~~~~~e~e~~ik~~~~~L~~I~~D~sV 32 (94)
T 2qzg_A 5 FSAKKLSPADKLKNISSMLEEIVEDTTV 32 (94)
T ss_dssp --CCCCCHHHHHHHHHHHHHHHHTCTTS
T ss_pred hhhhhcchHHHHHHHHHHHHHHHcCCCC
Confidence 4567888999999999999988888654
No 23
>3som_A Methylmalonic aciduria and homocystinuria type C; structural genomics, structural genomics consortium, SGC, CB organic aciduria; HET: MSE B12 FLC 5AD; 2.40A {Homo sapiens}
Probab=24.67 E-value=35 Score=22.49 Aligned_cols=24 Identities=29% Similarity=0.562 Sum_probs=18.3
Q ss_pred cceEEEEeCChhHHHHHHHHHhhhhHH
Q psy2054 40 VKAIHIVNQPFYFNALYAIFKPFLKQK 66 (75)
Q Consensus 40 ~k~ih~iN~P~~~~~~~~~~k~fl~~K 66 (75)
-=++-+.|.|.+|+.+ +|||+..+
T Consensus 51 TLA~lVlsTP~mFe~a---Fkpfl~~~ 74 (286)
T 3som_A 51 TLAFLVLSTPAMFDRA---LKPFLQSC 74 (286)
T ss_dssp EEEEEEEECTTHHHHT---HHHHTTST
T ss_pred cEEEEEecCHHHHHHH---HHHHHHhh
Confidence 3478999999999866 47777543
No 24
>3r40_A Fluoroacetate dehalogenase; FACD, defluorinase, alpha/beta hydrolase, hydrolase; 1.05A {Rhodopseudomonas palustris} PDB: 3r3w_A 3r3x_A 3r3v_A 3r3u_A 3r3z_A 3r41_A 3r3y_A
Probab=23.09 E-value=1.2e+02 Score=17.73 Aligned_cols=48 Identities=8% Similarity=0.045 Sum_probs=34.8
Q ss_pred CCCHHHHHHHHHHHHHHHhcCCcccccCc-----------CccccccceEEEEeCChhHH
Q psy2054 5 KISLEEAFQLGTSVFEIALLDPRLQISGA-----------EKIPLRVKAIHIVNQPFYFN 53 (75)
Q Consensus 5 ~~s~~~~~r~~~~~~e~~l~~~~~q~~G~-----------~~~P~R~k~ih~iN~P~~~~ 53 (75)
.++..++.+...-+++.+-.+ ..-+-|. ..+|.|++++.+++.+....
T Consensus 84 ~~~~~~~~~~~~~~l~~l~~~-~~~lvGhS~Gg~ia~~~a~~~p~~v~~lvl~~~~~~~~ 142 (306)
T 3r40_A 84 PYTKRAMAKQLIEAMEQLGHV-HFALAGHNRGARVSYRLALDSPGRLSKLAVLDILPTYE 142 (306)
T ss_dssp GGSHHHHHHHHHHHHHHTTCS-SEEEEEETHHHHHHHHHHHHCGGGEEEEEEESCCCHHH
T ss_pred CCCHHHHHHHHHHHHHHhCCC-CEEEEEecchHHHHHHHHHhChhhccEEEEecCCCCcc
Confidence 578888888888888775333 3334444 67899999999999865543
No 25
>3kda_A CFTR inhibitory factor (CIF); alpha/beta hydrolase, hydrolase; 1.50A {Pseudomonas aeruginosa ucbpp-pa14} PDB: 3kd2_A 3pi6_A
Probab=22.73 E-value=1.2e+02 Score=17.78 Aligned_cols=46 Identities=11% Similarity=0.017 Sum_probs=34.0
Q ss_pred CCCCHHHHHHHHHHHHHHHhcCCcccccCc-----------CccccccceEEEEeCC
Q psy2054 4 SKISLEEAFQLGTSVFEIALLDPRLQISGA-----------EKIPLRVKAIHIVNQP 49 (75)
Q Consensus 4 ~~~s~~~~~r~~~~~~e~~l~~~~~q~~G~-----------~~~P~R~k~ih~iN~P 49 (75)
..++..+..+...-+++.+-.+...-+-|. ..+|.|++++.+++.+
T Consensus 75 ~~~~~~~~~~~l~~~l~~l~~~~p~~lvGhS~Gg~ia~~~a~~~p~~v~~lvl~~~~ 131 (301)
T 3kda_A 75 TGYSGEQVAVYLHKLARQFSPDRPFDLVAHDIGIWNTYPMVVKNQADIARLVYMEAP 131 (301)
T ss_dssp SCSSHHHHHHHHHHHHHHHCSSSCEEEEEETHHHHTTHHHHHHCGGGEEEEEEESSC
T ss_pred CCccHHHHHHHHHHHHHHcCCCccEEEEEeCccHHHHHHHHHhChhhccEEEEEccC
Confidence 567888888888888887644431333444 6689999999999985
No 26
>2cs3_A Protein C14ORF4, MY039 protein; ZF-C3HC4 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.3
Probab=22.56 E-value=12 Score=20.35 Aligned_cols=18 Identities=22% Similarity=0.224 Sum_probs=14.8
Q ss_pred CccccccceEEEEeCChh
Q psy2054 34 EKIPLRVKAIHIVNQPFY 51 (75)
Q Consensus 34 ~~~P~R~k~ih~iN~P~~ 51 (75)
.--+.|+...|||.+|+.
T Consensus 19 tlC~erLEdtHFVQCPsv 36 (93)
T 2cs3_A 19 TICHERLEDTHFVQCPSV 36 (93)
T ss_dssp SSSCSCCSSTTSEECSSC
T ss_pred ecchhhhccCceeeCCCc
Confidence 345679999999999985
No 27
>2j89_A Methionine sulfoxide reductase A; MSRA, poplar, oxidoreductase; 1.7A {Populus trichocarpa}
Probab=22.17 E-value=34 Score=22.28 Aligned_cols=20 Identities=10% Similarity=0.069 Sum_probs=16.9
Q ss_pred CCCCCCCHHHHHHHHHHHHH
Q psy2054 1 MDFSKISLEEAFQLGTSVFE 20 (75)
Q Consensus 1 ~dp~~~s~~~~~r~~~~~~e 20 (75)
|||++.|..++++..+-..|
T Consensus 152 YDP~~ISy~~LL~~Fw~~hD 171 (261)
T 2j89_A 152 YDPKECSFDTLIDVLWARHD 171 (261)
T ss_dssp ECTTTSCHHHHHHHHHHHSC
T ss_pred ECCCcCCHHHHHHHHHHhcC
Confidence 69999999999998876544
No 28
>2qvb_A Haloalkane dehalogenase 3; RV2579, alpha-beta hydrolase protei structural genomics consortium, TBSGC, hydrolase; 1.19A {Mycobacterium tuberculosis} PDB: 2o2i_A 2o2h_A
Probab=22.07 E-value=1.1e+02 Score=17.74 Aligned_cols=46 Identities=13% Similarity=0.099 Sum_probs=32.9
Q ss_pred CCCHHHHHHHHHHHHHHHhcCCcccccCc-----------CccccccceEEEEeCCh
Q psy2054 5 KISLEEAFQLGTSVFEIALLDPRLQISGA-----------EKIPLRVKAIHIVNQPF 50 (75)
Q Consensus 5 ~~s~~~~~r~~~~~~e~~l~~~~~q~~G~-----------~~~P~R~k~ih~iN~P~ 50 (75)
.++..+..+...-+++.+-.+...-+-|. ..+|.|++++.+++.+.
T Consensus 78 ~~~~~~~~~~~~~~l~~~~~~~~~~lvG~S~Gg~~a~~~a~~~p~~v~~lvl~~~~~ 134 (297)
T 2qvb_A 78 RYSYGEQRDFLFALWDALDLGDHVVLVLHDWGSALGFDWANQHRDRVQGIAFMEAIV 134 (297)
T ss_dssp SSCHHHHHHHHHHHHHHTTCCSCEEEEEEEHHHHHHHHHHHHSGGGEEEEEEEEECC
T ss_pred CcCHHHHHHHHHHHHHHcCCCCceEEEEeCchHHHHHHHHHhChHhhheeeEecccc
Confidence 38888888888877777543133334444 66899999999999754
No 29
>3fsg_A Alpha/beta superfamily hydrolase; PF00561, MCSG, PSI, PSI-2, structural genomics, protein structure initiative, midwest for structural genomics; 2.00A {Oenococcus oeni}
Probab=21.89 E-value=1.1e+02 Score=17.46 Aligned_cols=45 Identities=7% Similarity=0.051 Sum_probs=33.5
Q ss_pred CCHHHHHHHHHHHHHHHhcCCcccccCc-----------CccccccceEEEEeCCh
Q psy2054 6 ISLEEAFQLGTSVFEIALLDPRLQISGA-----------EKIPLRVKAIHIVNQPF 50 (75)
Q Consensus 6 ~s~~~~~r~~~~~~e~~l~~~~~q~~G~-----------~~~P~R~k~ih~iN~P~ 50 (75)
++..+..+...-.++..+.....-+-|. ..+|.+++++.+++.+.
T Consensus 69 ~~~~~~~~~~~~~l~~~~~~~~~~l~G~S~Gg~~a~~~a~~~p~~v~~lvl~~~~~ 124 (272)
T 3fsg_A 69 STSDNVLETLIEAIEEIIGARRFILYGHSYGGYLAQAIAFHLKDQTLGVFLTCPVI 124 (272)
T ss_dssp CSHHHHHHHHHHHHHHHHTTCCEEEEEEEHHHHHHHHHHHHSGGGEEEEEEEEECS
T ss_pred CCHHHHHHHHHHHHHHHhCCCcEEEEEeCchHHHHHHHHHhChHhhheeEEECccc
Confidence 7888888888888887554444444554 67899999999999763
No 30
>3om8_A Probable hydrolase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MES; 2.25A {Pseudomonas aeruginosa} SCOP: c.69.1.0
Probab=21.34 E-value=1.3e+02 Score=17.91 Aligned_cols=46 Identities=11% Similarity=0.114 Sum_probs=33.1
Q ss_pred CCCCHHHHHHHHHHHHHHHhcCCcccccCc-----------CccccccceEEEEeCCh
Q psy2054 4 SKISLEEAFQLGTSVFEIALLDPRLQISGA-----------EKIPLRVKAIHIVNQPF 50 (75)
Q Consensus 4 ~~~s~~~~~r~~~~~~e~~l~~~~~q~~G~-----------~~~P~R~k~ih~iN~P~ 50 (75)
..++..++..-..-++|.+-.+. .-+-|. ..+|.|++++-++|.+.
T Consensus 72 ~~~~~~~~a~dl~~~l~~l~~~~-~~lvGhS~Gg~va~~~A~~~P~rv~~lvl~~~~~ 128 (266)
T 3om8_A 72 GPYTLARLGEDVLELLDALEVRR-AHFLGLSLGGIVGQWLALHAPQRIERLVLANTSA 128 (266)
T ss_dssp SCCCHHHHHHHHHHHHHHTTCSC-EEEEEETHHHHHHHHHHHHCGGGEEEEEEESCCS
T ss_pred CCCCHHHHHHHHHHHHHHhCCCc-eEEEEEChHHHHHHHHHHhChHhhheeeEecCcc
Confidence 45788888887777777654443 334454 67899999999998753
No 31
>2xua_A PCAD, 3-oxoadipate ENOL-lactonase; hydrolase, catechol metabolism; 1.90A {Burkholderia xenovorans}
Probab=21.18 E-value=1.4e+02 Score=17.64 Aligned_cols=46 Identities=9% Similarity=0.133 Sum_probs=33.1
Q ss_pred CCCCHHHHHHHHHHHHHHHhcCCcccccCc-----------CccccccceEEEEeCCh
Q psy2054 4 SKISLEEAFQLGTSVFEIALLDPRLQISGA-----------EKIPLRVKAIHIVNQPF 50 (75)
Q Consensus 4 ~~~s~~~~~r~~~~~~e~~l~~~~~q~~G~-----------~~~P~R~k~ih~iN~P~ 50 (75)
..++..++.+-..-++|.+-.+. .-+-|. ..+|.|++++.+++.+.
T Consensus 71 ~~~~~~~~~~dl~~~l~~l~~~~-~~lvGhS~Gg~va~~~A~~~p~~v~~lvl~~~~~ 127 (266)
T 2xua_A 71 GPYTIEQLTGDVLGLMDTLKIAR-ANFCGLSMGGLTGVALAARHADRIERVALCNTAA 127 (266)
T ss_dssp SCCCHHHHHHHHHHHHHHTTCCS-EEEEEETHHHHHHHHHHHHCGGGEEEEEEESCCS
T ss_pred CCCCHHHHHHHHHHHHHhcCCCc-eEEEEECHHHHHHHHHHHhChhhhheeEEecCCC
Confidence 45788888888777777754443 324444 66899999999998753
No 32
>3hss_A Putative bromoperoxidase; alpha beta hydrolase, oxidoreductase, hydrolase; 1.90A {Mycobacterium tuberculosis} PDB: 3e3a_A 3hys_A 3hzo_A
Probab=20.43 E-value=1.4e+02 Score=17.43 Aligned_cols=50 Identities=8% Similarity=0.050 Sum_probs=35.7
Q ss_pred CCCCCHHHHHHHHHHHHHHHhcCCcccccCc-----------CccccccceEEEEeCChhHH
Q psy2054 3 FSKISLEEAFQLGTSVFEIALLDPRLQISGA-----------EKIPLRVKAIHIVNQPFYFN 53 (75)
Q Consensus 3 p~~~s~~~~~r~~~~~~e~~l~~~~~q~~G~-----------~~~P~R~k~ih~iN~P~~~~ 53 (75)
+..++..+..+...-+++.+-.+ ..-+-|. ..+|-+++++.+++.+....
T Consensus 88 ~~~~~~~~~~~~~~~~l~~l~~~-~~~lvGhS~Gg~ia~~~a~~~p~~v~~lvl~~~~~~~~ 148 (293)
T 3hss_A 88 AEGFTTQTMVADTAALIETLDIA-PARVVGVSMGAFIAQELMVVAPELVSSAVLMATRGRLD 148 (293)
T ss_dssp CCSCCHHHHHHHHHHHHHHHTCC-SEEEEEETHHHHHHHHHHHHCGGGEEEEEEESCCSSCC
T ss_pred cccCCHHHHHHHHHHHHHhcCCC-cEEEEeeCccHHHHHHHHHHChHHHHhhheecccccCC
Confidence 45678888888888888876333 3333444 66899999999999875443
Done!