RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= psy2054
         (75 letters)



>1r5l_A Alpha-TTP, protein (alpha-tocopherol transfer protein); ataxia with
           vitamin E deficiency, transport protein; HET: MSE VIV;
           1.50A {Homo sapiens} SCOP: a.5.3.1 c.13.1.1 PDB: 1oiz_A*
           1oip_A*
          Length = 262

 Score = 67.7 bits (166), Expect = 1e-15
 Identities = 20/100 (20%), Positives = 42/100 (42%), Gaps = 30/100 (30%)

Query: 1   MDFSKISLEEAFQLGTSVFEIALLDPRLQISGA--------------------------- 33
            D    +  + F++     E+ + +   Q +G                            
Sbjct: 106 WDPKVFTAYDVFRVSLITSELIVQEVETQRNGIKAIFDLEGWQFSHAFQITPSVAKKIAA 165

Query: 34  ---EKIPLRVKAIHIVNQPFYFNALYAIFKPFLKQKLRRR 70
              +  PL+V+ IH++N+P  F+A++++ KPFL +K++ R
Sbjct: 166 VLTDSFPLKVRGIHLINEPVIFHAVFSMIKPFLTEKIKER 205


>3hx3_A Retinaldehyde-binding protein 1; lipid transfer protein,
           11-CIS-retinal, bothnia dystrophy, acetylation,
           cytoplasm, disease mutation; HET: RET; 1.69A {Homo
           sapiens} PDB: 3hy5_A*
          Length = 316

 Score = 68.2 bits (167), Expect = 1e-15
 Identities = 27/100 (27%), Positives = 37/100 (37%), Gaps = 30/100 (30%)

Query: 1   MDFSKISLEEAFQLGTSVFEIALLDPRLQISGAEKI------------------------ 36
               +I+ +E  Q    + E  L +   QI+G   I                        
Sbjct: 165 WQSQEITFDEILQAYCFILEKLLENEETQINGFCIIENFKGFTMQQAASLRTSDLRKMVD 224

Query: 37  ------PLRVKAIHIVNQPFYFNALYAIFKPFLKQKLRRR 70
                 P   KAIH ++QP+YF   Y + KPFLK KL  R
Sbjct: 225 MLQDSFPAWFKAIHFIHQPWYFTTTYNVVKPFLKSKLLER 264


>1olm_A SEC14-like protein 2; lipid-binding protein, cholesterol
           biosynthesis, oxidized vitamin E, lipid-binding,
           transport, transcription regulation; HET: VTQ; 1.95A
           {Homo sapiens} SCOP: a.5.3.1 b.132.1.1 c.13.1.1 PDB:
           1o6u_A* 1olm_E*
          Length = 403

 Score = 49.2 bits (117), Expect = 8e-09
 Identities = 11/34 (32%), Positives = 18/34 (52%)

Query: 37  PLRVKAIHIVNQPFYFNALYAIFKPFLKQKLRRR 70
           P  +K + +V  P  F   Y + KPFL +  R++
Sbjct: 183 PETLKRLFVVKAPKLFPVAYNLIKPFLSEDTRKK 216


>3q8g_A CRAL-TRIO domain-containing protein YKL091C; string motif,
           signaling protein, directed evoluti SEC14, phospholipid
           transporter, lipid; HET: PEE; 1.80A {Saccharomyces
           cerevisiae} PDB: 3b7n_A* 3b74_A* 3b7q_A* 3b7z_A*
          Length = 320

 Score = 39.0 bits (91), Expect = 3e-05
 Identities = 10/33 (30%), Positives = 18/33 (54%)

Query: 37  PLRVKAIHIVNQPFYFNALYAIFKPFLKQKLRR 69
           P R+   +I++ PF F+ ++ + KPFL      
Sbjct: 218 PERMGKFYIIHSPFGFSTMFKMVKPFLDPVTVS 250


>1aua_A Phosphatidylinositol transfer protein SEC14P; phospholipid-binding
           protein, peripheral golgi membrane protein, phospholipid
           exchange; HET: BOG; 2.50A {Saccharomyces cerevisiae}
           SCOP: a.5.3.1 c.13.1.1
          Length = 296

 Score = 38.6 bits (90), Expect = 4e-05
 Identities = 12/33 (36%), Positives = 18/33 (54%)

Query: 37  PLRVKAIHIVNQPFYFNALYAIFKPFLKQKLRR 69
           P R+   +I+N PF F+  + +FKPFL      
Sbjct: 203 PERMGKFYIINAPFGFSTAFRLFKPFLDPVTVS 235


>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
           acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
           synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
          Length = 2006

 Score = 28.9 bits (64), Expect = 0.14
 Identities = 15/76 (19%), Positives = 23/76 (30%), Gaps = 21/76 (27%)

Query: 5   KISL---EEAFQLGTSV--FEIALLDPRLQISGAEKIPLR--VKAIHIVNQPFY------ 51
            + L   E  +  G  +      LL          K  ++  + A  +  +PF       
Sbjct: 85  NLCLTEFENCYLEGNDIHALAAKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSA 144

Query: 52  -FNA-------LYAIF 59
            F A       L AIF
Sbjct: 145 LFRAVGEGNAQLVAIF 160


>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
           programmed cell death; HET: DTP; 6.90A {Drosophila
           melanogaster} PDB: 3iz8_A*
          Length = 1221

 Score = 28.3 bits (62), Expect = 0.17
 Identities = 9/27 (33%), Positives = 14/27 (51%), Gaps = 4/27 (14%)

Query: 52  FNALYAIFKPFLKQKLRRR---WCLDG 75
           F  ++  F+ FL+QK+R     W   G
Sbjct: 493 FRMVFLDFR-FLEQKIRHDSTAWNASG 518



 Score = 26.7 bits (58), Expect = 0.69
 Identities = 15/69 (21%), Positives = 26/69 (37%), Gaps = 5/69 (7%)

Query: 1  MDFSKISLEEAFQLGTSVFE---IALLDPRLQISGAEKIPLRVKAI-HIVNQPFYFNALY 56
          MDF     +  ++   SVFE   +   D +  +    K  L  + I HI+      +   
Sbjct: 7  MDFETGEHQYQYKDILSVFEDAFVDNFDCK-DVQDMPKSILSKEEIDHIIMSKDAVSGTL 65

Query: 57 AIFKPFLKQ 65
           +F   L +
Sbjct: 66 RLFWTLLSK 74


>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
          photosynthetic reaction center, peripheral antenna;
          HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
          Length = 154

 Score = 27.6 bits (60), Expect = 0.29
 Identities = 6/24 (25%), Positives = 11/24 (45%), Gaps = 1/24 (4%)

Query: 20 EIALLDPRLQISGAEKIP-LRVKA 42
           +  L   L++   +  P L +KA
Sbjct: 21 ALKKLQASLKLYADDSAPALAIKA 44


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.329    0.144    0.435 

Gapped
Lambda     K      H
   0.267   0.0629    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,187,065
Number of extensions: 57925
Number of successful extensions: 115
Number of sequences better than 10.0: 1
Number of HSP's gapped: 114
Number of HSP's successfully gapped: 10
Length of query: 75
Length of database: 6,701,793
Length adjustment: 44
Effective length of query: 31
Effective length of database: 5,473,269
Effective search space: 169671339
Effective search space used: 169671339
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 51 (23.6 bits)