RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy2054
         (75 letters)



>d1r5la2 c.13.1.1 (A:91-275) Alpha-tocopherol transfer protein
           {Human (Homo sapiens) [TaxId: 9606]}
          Length = 185

 Score = 45.8 bits (108), Expect = 3e-08
 Identities = 20/100 (20%), Positives = 42/100 (42%), Gaps = 30/100 (30%)

Query: 1   MDFSKISLEEAFQLGTSVFEIALLDPRLQISG---------------------------- 32
            D    +  + F++     E+ + +   Q +G                            
Sbjct: 32  WDPKVFTAYDVFRVSLITSELIVQEVETQRNGIKAIFDLEGWQFSHAFQITPSVAKKIAA 91

Query: 33  --AEKIPLRVKAIHIVNQPFYFNALYAIFKPFLKQKLRRR 70
              +  PL+V+ IH++N+P  F+A++++ KPFL +K++ R
Sbjct: 92  VLTDSFPLKVRGIHLINEPVIFHAVFSMIKPFLTEKIKER 131


>d1olma3 c.13.1.1 (A:76-274) Supernatant protein factor (SPF),
           middle domain {Human (Homo sapiens) [TaxId: 9606]}
          Length = 199

 Score = 38.1 bits (88), Expect = 2e-05
 Identities = 12/37 (32%), Positives = 19/37 (51%)

Query: 34  EKIPLRVKAIHIVNQPFYFNALYAIFKPFLKQKLRRR 70
           E  P  +K + +V  P  F   Y + KPFL +  R++
Sbjct: 105 ENYPETLKRLFVVKAPKLFPVAYNLIKPFLSEDTRKK 141


>d1auaa2 c.13.1.1 (A:97-299) C-terminal domain of
           phosphatidylinositol transfer protein sec14p {Baker's
           yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
          Length = 203

 Score = 37.0 bits (85), Expect = 5e-05
 Identities = 19/70 (27%), Positives = 32/70 (45%), Gaps = 7/70 (10%)

Query: 1   MDFSKISLEEAFQLGTSVFEIALLDPRLQISGAEKIPLRVKAIHIVNQPFYFNALYAIFK 60
           MD   IS+  A+ + + V E + +            P R+   +I+N PF F+  + +FK
Sbjct: 81  MDLKGISISSAYSVMSYVREASYISQN-------YYPERMGKFYIINAPFGFSTAFRLFK 133

Query: 61  PFLKQKLRRR 70
           PFL      +
Sbjct: 134 PFLDPVTVSK 143


>d1s6la2 d.357.1.2 (A:81-212) Alkylmercury lyase MerB {Escherichia
           coli [TaxId: 562]}
          Length = 132

 Score = 24.4 bits (53), Expect = 1.2
 Identities = 8/20 (40%), Positives = 10/20 (50%), Gaps = 1/20 (5%)

Query: 6   ISLEEAFQLGTSVFEIALLD 25
           +S+ EAF LG       LL 
Sbjct: 107 VSVHEAFGLGQEFNR-HLLQ 125


>d2gi3a1 c.117.1.1 (A:1-475) Glutamyl-tRNA(Gln) amidotransferase
          subunit A {Thermotoga maritima [TaxId: 2336]}
          Length = 475

 Score = 24.4 bits (52), Expect = 1.7
 Identities = 10/37 (27%), Positives = 20/37 (54%), Gaps = 9/37 (24%)

Query: 1  MDFSKISLEEAFQLG----TSVFEIAL-----LDPRL 28
          +DF K+++EE  +L       + +++L     LDP +
Sbjct: 4  LDFRKLTIEECLKLSEEEREKLPQLSLETIKRLDPHV 40


>d2o3aa1 c.116.1.8 (A:1-167) Uncharacterized protein AF0751
           {Archaeoglobus fulgidus [TaxId: 2234]}
          Length = 167

 Score = 23.5 bits (51), Expect = 2.5
 Identities = 17/45 (37%), Positives = 20/45 (44%), Gaps = 5/45 (11%)

Query: 20  EIALLDPRLQISGAEKIPLRVKA-----IHIVNQPFYFNALYAIF 59
           EI   D  L + GAEK+P  V       I I  QP    A  A+F
Sbjct: 92  EIKRADKVLVVVGAEKVPPEVYELCDLNISIGTQPHSEVAALAVF 136


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.329    0.144    0.435 

Gapped
Lambda     K      H
   0.267   0.0695    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 292,337
Number of extensions: 11308
Number of successful extensions: 33
Number of sequences better than 10.0: 1
Number of HSP's gapped: 33
Number of HSP's successfully gapped: 6
Length of query: 75
Length of database: 2,407,596
Length adjustment: 42
Effective length of query: 33
Effective length of database: 1,830,936
Effective search space: 60420888
Effective search space used: 60420888
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 47 (22.0 bits)