BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy2055
(86 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3HY5|A Chain A, Crystal Structure Of Cralbp
Length = 316
Score = 48.1 bits (113), Expect = 1e-06, Method: Composition-based stats.
Identities = 20/40 (50%), Positives = 25/40 (62%)
Query: 11 EKIPLRVKAIHIVNQPFYFNALYAIFKPFLKQKLRRRNVV 50
+ P R KAIH ++QP+YF Y + KPFLK KL R V
Sbjct: 228 DSFPARFKAIHFIHQPWYFTTTYNVVKPFLKSKLLERVFV 267
>pdb|1OIP|A Chain A, The Molecular Basis Of Vitamin E Retention: Structure Of
Human Alpha-tocopherol Transfer Protein
pdb|1OIZ|A Chain A, The Molecular Basis Of Vitamin E Retention: Structure Of
Human Alpha-Tocopherol Transfer Protein
pdb|1OIZ|B Chain B, The Molecular Basis Of Vitamin E Retention: Structure Of
Human Alpha-Tocopherol Transfer Protein
Length = 278
Score = 48.1 bits (113), Expect = 1e-06, Method: Composition-based stats.
Identities = 16/44 (36%), Positives = 32/44 (72%)
Query: 4 RASVVSLEKIPLRVKAIHIVNQPFYFNALYAIFKPFLKQKLRRR 47
+ + V + PL+V+ IH++N+P F+A++++ KPFL +K++ R
Sbjct: 178 KIAAVLTDSFPLKVRGIHLINEPVIFHAVFSMIKPFLTEKIKER 221
>pdb|1R5L|A Chain A, Crystal Structure Of Human Alpha-tocopherol Transfer
Protein Bound To Its Ligand
Length = 262
Score = 47.0 bits (110), Expect = 3e-06, Method: Composition-based stats.
Identities = 16/44 (36%), Positives = 31/44 (70%)
Query: 4 RASVVSLEKIPLRVKAIHIVNQPFYFNALYAIFKPFLKQKLRRR 47
+ + V + PL+V+ IH++N+P F+A+++ KPFL +K++ R
Sbjct: 162 KIAAVLTDSFPLKVRGIHLINEPVIFHAVFSXIKPFLTEKIKER 205
>pdb|3HX3|A Chain A, Crystal Structure Of Cralbp Mutant R234w
Length = 316
Score = 44.7 bits (104), Expect = 1e-05, Method: Composition-based stats.
Identities = 19/40 (47%), Positives = 24/40 (60%)
Query: 11 EKIPLRVKAIHIVNQPFYFNALYAIFKPFLKQKLRRRNVV 50
+ P KAIH ++QP+YF Y + KPFLK KL R V
Sbjct: 228 DSFPAWFKAIHFIHQPWYFTTTYNVVKPFLKSKLLERVFV 267
>pdb|1AUA|A Chain A, Phosphatidylinositol Transfer Protein Sec14p From
Saccharomyces Cerevisiae
Length = 296
Score = 36.2 bits (82), Expect = 0.005, Method: Composition-based stats.
Identities = 15/36 (41%), Positives = 22/36 (61%)
Query: 5 ASVVSLEKIPLRVKAIHIVNQPFYFNALYAIFKPFL 40
AS +S P R+ +I+N PF F+ + +FKPFL
Sbjct: 194 ASYISQNYYPERMGKFYIINAPFGFSTAFRLFKPFL 229
>pdb|3Q8G|A Chain A, Resurrection Of A Functional Phosphatidylinositol Transfer
Protein From A Pseudo-Sec14 Scaffold By Directed
Evolution
Length = 320
Score = 29.6 bits (65), Expect = 0.47, Method: Composition-based stats.
Identities = 11/33 (33%), Positives = 20/33 (60%)
Query: 8 VSLEKIPLRVKAIHIVNQPFYFNALYAIFKPFL 40
+S P R+ +I++ PF F+ ++ + KPFL
Sbjct: 212 ISQNYYPERMGKFYIIHSPFGFSTMFKMVKPFL 244
>pdb|3B74|A Chain A, Crystal Structure Of Yeast Sec14 Homolog Sfh1 In Complex
With Phosphatidylethanolamine
pdb|3B7N|A Chain A, Crystal Structure Of Yeast Sec14 Homolog Sfh1 In Complex
With Phosphatidylinositol
pdb|3B7Q|A Chain A, Crystal Structure Of Yeast Sec14 Homolog Sfh1 In Complex
With Phosphatidylcholine
pdb|3B7Q|B Chain B, Crystal Structure Of Yeast Sec14 Homolog Sfh1 In Complex
With Phosphatidylcholine
pdb|3B7Z|A Chain A, Crystal Structure Of Yeast Sec14 Homolog Sfh1 In Complex
With Phosphatidylcholine Or Phosphatidylinositol
Length = 320
Score = 29.6 bits (65), Expect = 0.47, Method: Composition-based stats.
Identities = 11/33 (33%), Positives = 20/33 (60%)
Query: 8 VSLEKIPLRVKAIHIVNQPFYFNALYAIFKPFL 40
+S P R+ +I++ PF F+ ++ + KPFL
Sbjct: 212 ISQNYYPERMGKFYIIHSPFGFSTMFKMVKPFL 244
>pdb|3BQW|A Chain A, Crystal Structure Of The Putative Capsid Protein Of
Prophage (e.coli Cft073)
Length = 351
Score = 25.8 bits (55), Expect = 6.3, Method: Composition-based stats.
Identities = 11/24 (45%), Positives = 17/24 (70%), Gaps = 1/24 (4%)
Query: 61 DG-KKVFIKKGFLIKGNCNNRGLI 83
DG +K F++ L+ GN NN+GL+
Sbjct: 270 DGTEKYFLEPDLLVLGNTNNKGLV 293
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.332 0.147 0.456
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,416,478
Number of Sequences: 62578
Number of extensions: 79232
Number of successful extensions: 195
Number of sequences better than 100.0: 8
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 187
Number of HSP's gapped (non-prelim): 8
length of query: 86
length of database: 14,973,337
effective HSP length: 54
effective length of query: 32
effective length of database: 11,594,125
effective search space: 371012000
effective search space used: 371012000
T: 11
A: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 45 (21.9 bits)