Query         psy2055
Match_columns 86
No_of_seqs    115 out of 702
Neff          6.5 
Searched_HMMs 46136
Date          Fri Aug 16 23:04:41 2013
Command       hhsearch -i /work/01045/syshi/Psyhhblits/psy2055.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/2055hhsearch_cdd -cpu 12 -v 0 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 PF00650 CRAL_TRIO:  CRAL/TRIO   99.7 3.2E-18 6.9E-23  112.4   6.1   71    2-76     85-156 (159)
  2 KOG1471|consensus               99.7 1.8E-18 3.9E-23  126.0   4.0   73    2-79    183-259 (317)
  3 smart00516 SEC14 Domain in hom  99.7 3.4E-17 7.4E-22  107.3   4.2   71    2-76     83-153 (158)
  4 cd00170 SEC14 Sec14p-like lipi  99.7 4.3E-17 9.3E-22  104.9   4.6   70    2-76     85-154 (157)
  5 KOG1470|consensus               99.3 1.4E-12   3E-17   97.6   2.9   69    2-76    171-239 (324)
  6 PF13716 CRAL_TRIO_2:  Divergen  98.3 3.1E-07 6.6E-12   60.3   1.3   68    2-75     70-139 (149)
  7 KOG4406|consensus               95.7  0.0052 1.1E-07   48.1   1.5   59   13-77    162-222 (467)
  8 PF04378 RsmJ:  Ribosomal RNA s  52.1      21 0.00046   26.0   3.4   30   18-47    206-235 (245)
  9 COG2961 ComJ Protein involved   40.3      43 0.00094   25.1   3.5   29   18-46    237-265 (279)
 10 PRK05428 HPr kinase/phosphoryl  29.1      58  0.0013   24.6   2.7   37   18-54    105-141 (308)
 11 PF03641 Lysine_decarbox:  Poss  27.3      31 0.00066   22.3   0.8   36   19-54     86-126 (133)
 12 KOG1120|consensus               25.6      35 0.00076   22.9   0.9   38   17-54     84-121 (134)
 13 PHA02677 hypothetical protein;  24.8      70  0.0015   20.7   2.1   19   28-46     10-28  (108)
 14 TIGR00679 hpr-ser Hpr(Ser) kin  21.7   1E+02  0.0022   23.3   2.7   37   18-54    105-141 (304)
 15 PF15156 CLN6:  Ceroid-lipofusc  20.3      89  0.0019   23.1   2.1   25   23-47     50-77  (284)

No 1  
>PF00650 CRAL_TRIO:  CRAL/TRIO domain;  InterPro: IPR001251 This entry defines the C-terminal of various retinaldehyde/retinal-binding proteins that may be functional components of the visual cycle. Cellular retinaldehyde-binding protein (CRALBP) carries 11-cis-retinol or 11-cis-retinaldehyde as endogenous ligands and may function as a substrate carrier protein that modulates interaction of these retinoids with visual cycle enzymes []. The multidomain protein Trio binds the LAR transmembrane tyrosine phosphatase, contains a protein kinase domain, and has separate rac-specific and rho-specific guanine nucleotide exchange factor domains []. Trio is a multifunctional protein that integrates and amplifies signals involved in coordinating actin remodeling, which is necessary for cell migration and growth. Other members of the family are transfer proteins that include, guanine nucleotide exchange factor that may function as an effector of RAC1, phosphatidylinositol/phosphatidylcholine transfer protein that is required for the transport of secretory proteins from the golgi complex and alpha-tocopherol transfer protein that enhances the transfer of the ligand between separate membranes.; PDB: 1OIZ_A 1R5L_A 1OIP_A 3HX3_A 3HY5_A 1OLM_E 1O6U_E 3Q8G_A 3B7Q_B 3B7Z_A ....
Probab=99.74  E-value=3.2e-18  Score=112.35  Aligned_cols=71  Identities=27%  Similarity=0.405  Sum_probs=62.5

Q ss_pred             HhHHHHHhhcccccccceEEEEcCChhHHHHHHHHHHHhhHHhhCCeEEecCC-cccccCCcccccCCcCCCCCcc
Q psy2055           2 FYRASVVSLEKIPLRVKAIHIVNQPFYFNALYAIFKPFLKQKLRRRNVVRLQT-HYCCIGDGKKVFIKKGFLIKGN   76 (86)
Q Consensus         2 lkk~~~~~q~~~P~R~k~ihiIN~P~~~~~i~~l~k~fl~~Klr~RI~vh~~~-~~~~~~~~l~~~id~~~Lpk~~   76 (86)
                      +|.+++.+|++||+|++++|++|+|++++.+|+++++|+++++++||+++++. +.    +++.++||++.||.++
T Consensus        85 ~k~~~~~~~~~yP~rl~~i~iin~p~~~~~~~~~~~~~l~~~~~~ki~~~~~~~~~----~~l~~~i~~~~lP~~~  156 (159)
T PF00650_consen   85 LKKIIQLLQDHYPERLGKIYIINAPWFFRVLWKIVKPFLSPKTREKIVFHSGSDWK----AKLKEYIDPEQLPVEY  156 (159)
T ss_dssp             HHHHHHHHHHHSTTTEEEEEEES--TTHHHHHHHHGGGS-HHHHCTEEEECTTCHC----HHHCCCSTGGGSBGGG
T ss_pred             hhhhhhhhcccCCccceeEEEEecChhhhhhHhHHHhhcCHhhheeEEEECCcccH----HHHHhhCCHhHCchhc
Confidence            67899999999999999999999999999999999999999999999999654 32    4799999999999875


No 2  
>KOG1471|consensus
Probab=99.73  E-value=1.8e-18  Score=126.05  Aligned_cols=73  Identities=29%  Similarity=0.548  Sum_probs=65.6

Q ss_pred             HhHHHHHhhcccccccceEEEEcCChhHHHHHHHHHHHhhHHhhCCeE-EecCCcccccCCcccccCCcCCCCC---ccc
Q psy2055           2 FYRASVVSLEKIPLRVKAIHIVNQPFYFNALYAIFKPFLKQKLRRRNV-VRLQTHYCCIGDGKKVFIKKGFLIK---GNC   77 (86)
Q Consensus         2 lkk~~~~~q~~~P~R~k~ihiIN~P~~~~~i~~l~k~fl~~Klr~RI~-vh~~~~~~~~~~~l~~~id~~~Lpk---~~~   77 (86)
                      +++++...|++||+|++++||||+|++|+++|++++|||++|+++||+ +|+++ .    ++|+++||++.||.   |+|
T Consensus       183 ~~~~~~~~q~~yPe~l~~~~iIN~P~~f~~~~~~ikpfL~~kt~~ki~~~~~~~-~----~~L~k~i~~~~LP~~yGG~~  257 (317)
T KOG1471|consen  183 LKKILKILQDNYPERLKRIHIINAPTIFSALWKVVKPFLDEKTRKKIHVLHSKD-K----ESLLKYIPPEVLPEEYGGTC  257 (317)
T ss_pred             HHHHHHHHHHhCHHhhceEEEEcCchhHHHHHHHHhccCCHHHHhhheecCCCc-h----hhhhhhCCHhhCccccCCCc
Confidence            688999999999999999999999999999999999999999999999 45544 4    89999999999975   455


Q ss_pred             cC
Q psy2055          78 NN   79 (86)
Q Consensus        78 ~~   79 (86)
                      .+
T Consensus       258 ~~  259 (317)
T KOG1471|consen  258 GD  259 (317)
T ss_pred             cc
Confidence            55


No 3  
>smart00516 SEC14 Domain in homologues of a S. cerevisiae phosphatidylinositol transfer protein (Sec14p). Domain in homologues of a S. cerevisiae phosphatidylinositol transfer protein (Sec14p) and in RhoGAPs, RhoGEFs and the RasGAP, neurofibromin (NF1). Lipid-binding domain. The SEC14 domain of Dbl is known to associate with G protein beta/gamma subunits.
Probab=99.68  E-value=3.4e-17  Score=107.32  Aligned_cols=71  Identities=23%  Similarity=0.375  Sum_probs=66.4

Q ss_pred             HhHHHHHhhcccccccceEEEEcCChhHHHHHHHHHHHhhHHhhCCeEEecCCcccccCCcccccCCcCCCCCcc
Q psy2055           2 FYRASVVSLEKIPLRVKAIHIVNQPFYFNALYAIFKPFLKQKLRRRNVVRLQTHYCCIGDGKKVFIKKGFLIKGN   76 (86)
Q Consensus         2 lkk~~~~~q~~~P~R~k~ihiIN~P~~~~~i~~l~k~fl~~Klr~RI~vh~~~~~~~~~~~l~~~id~~~Lpk~~   76 (86)
                      +|+++..+|++||.|++++|++|+|+++.++++++++|+++++++||+++++++.    ++|.++||++.||+++
T Consensus        83 lk~~~~~~~~~yp~~l~~i~ivn~p~~~~~~~~~~~~~l~~~~~~ki~~~~~~~~----~~L~~~i~~~~lP~~~  153 (158)
T smart00516       83 LRKILKILQDHYPERLGKVLIINPPWFFRVLWKIIKPFLDEKTREKIRFVGNDSK----EELLEYIDPEQLPEEL  153 (158)
T ss_pred             HHHHHHHHHHHhHHHhCeEEEECCCHHHHHHHHHHHhhcChhhhccEEEeCCCCH----HHHHhhCCHhhCcHhh
Confidence            6889999999999999999999999999999999999999999999999998544    7899999999999764


No 4  
>cd00170 SEC14 Sec14p-like lipid-binding domain. Found in secretory proteins, such as S. cerevisiae phosphatidylinositol transfer protein (Sec14p), and in lipid regulated proteins such as RhoGAPs, RhoGEFs and neurofibromin (NF1). SEC14 domain of Dbl is known to associate with G protein beta/gamma subunits.
Probab=99.68  E-value=4.3e-17  Score=104.91  Aligned_cols=70  Identities=29%  Similarity=0.469  Sum_probs=66.2

Q ss_pred             HhHHHHHhhcccccccceEEEEcCChhHHHHHHHHHHHhhHHhhCCeEEecCCcccccCCcccccCCcCCCCCcc
Q psy2055           2 FYRASVVSLEKIPLRVKAIHIVNQPFYFNALYAIFKPFLKQKLRRRNVVRLQTHYCCIGDGKKVFIKKGFLIKGN   76 (86)
Q Consensus         2 lkk~~~~~q~~~P~R~k~ihiIN~P~~~~~i~~l~k~fl~~Klr~RI~vh~~~~~~~~~~~l~~~id~~~Lpk~~   76 (86)
                      +|+++..+|++||.|++.+|++|+|+++..+++++++|+++++++||++++++ .    ++|.+++|++.||+++
T Consensus        85 ~k~~~~~~~~~yp~~l~~v~ivn~p~~~~~~~~~~~~~l~~~~~~ki~~~~~~-~----~~L~~~i~~~~Lp~~~  154 (157)
T cd00170          85 LKKILKILQDNYPERLKAVYIINPPWFFKVLWKIVKPFLSEKTRKKIVFLGSD-K----EELLKYIDKEQLPEEY  154 (157)
T ss_pred             HHHHHHHHHHhChHhhCeEEEECCCHhHHHHHHHHHHhcCHhhhhhEEEecCC-H----HHHHhhCChhhCcHhh
Confidence            68899999999999999999999999999999999999999999999999984 2    7999999999999875


No 5  
>KOG1470|consensus
Probab=99.29  E-value=1.4e-12  Score=97.55  Aligned_cols=69  Identities=20%  Similarity=0.295  Sum_probs=64.2

Q ss_pred             HhHHHHHhhcccccccceEEEEcCChhHHHHHHHHHHHhhHHhhCCeEEecCCcccccCCcccccCCcCCCCCcc
Q psy2055           2 FYRASVVSLEKIPLRVKAIHIVNQPFYFNALYAIFKPFLKQKLRRRNVVRLQTHYCCIGDGKKVFIKKGFLIKGN   76 (86)
Q Consensus         2 lkk~~~~~q~~~P~R~k~ihiIN~P~~~~~i~~l~k~fl~~Klr~RI~vh~~~~~~~~~~~l~~~id~~~Lpk~~   76 (86)
                      +|-+++++|++||.|+....++|+|++|+.+|++++||++++++++|.+..+.      +++.+|||++.||...
T Consensus       171 ~k~~~~~lq~hYPErLg~a~l~~~P~iF~~~wkiikpflDp~t~~Kv~F~~~~------~~l~~~~d~~~l~s~~  239 (324)
T KOG1470|consen  171 LKELLHILQDHYPERLGKALLVNAPWIFQPFWKIIKPFLDPKTASKVKFVEPK------DDLSEYFDESQLPSLF  239 (324)
T ss_pred             HHHHHHHHHHhChHHhhhhhhcCChHHHHHHHHHhhhccChhhhceeEEecCh------hHHHhhCCccccchhh
Confidence            46789999999999999999999999999999999999999999999999887      6799999999997643


No 6  
>PF13716 CRAL_TRIO_2:  Divergent CRAL/TRIO domain; PDB: 2D4Q_B 3PG7_B 2E2X_B 3P7Z_B 3PEG_A.
Probab=98.27  E-value=3.1e-07  Score=60.34  Aligned_cols=68  Identities=15%  Similarity=0.271  Sum_probs=52.2

Q ss_pred             HhHHHHHhhcccccccceEEEEcCChhHHHHH-HHHHHHhhHHh-hCCeEEecCCcccccCCcccccCCcCCCCCc
Q psy2055           2 FYRASVVSLEKIPLRVKAIHIVNQPFYFNALY-AIFKPFLKQKL-RRRNVVRLQTHYCCIGDGKKVFIKKGFLIKG   75 (86)
Q Consensus         2 lkk~~~~~q~~~P~R~k~ihiIN~P~~~~~i~-~l~k~fl~~Kl-r~RI~vh~~~~~~~~~~~l~~~id~~~Lpk~   75 (86)
                      ++++...++..++-+++.++++|+.+++..++ .+.+++.+.|. ..++....+-      ++|.++||++.||+.
T Consensus        70 l~~~~~~l~~~~~~nl~~vyiv~p~~~~k~~~~~~~~~~~~~~~~~~kv~~~~sl------~~L~~~i~~~qL~~~  139 (149)
T PF13716_consen   70 LKQLYKLLPRKYKKNLKKVYIVHPNWFLKKILATLLRPFVSSKFWKKKVVYVSSL------SELSKHIDPSQLPES  139 (149)
T ss_dssp             HHHTTTSS-HHHHHTEEEEEEES--HHHHHHHHHTTTTGGGGTT--TTEEEESST------CGGGGTSGGGG----
T ss_pred             HHHHHHHHHHHHhhceEEEEEECCCHHHHHHHHHHhcccccccccceEEEEECCH------HHHHhhCCHHHhccc
Confidence            35555667778888999999999999999999 66678889998 8999999888      899999999999653


No 7  
>KOG4406|consensus
Probab=95.70  E-value=0.0052  Score=48.07  Aligned_cols=59  Identities=17%  Similarity=0.268  Sum_probs=46.4

Q ss_pred             cccccceEEEEcCChhHHHHHHHHHHHhhHHhhCCeEEecCCcccccCCcccccCCcCCC--CCccc
Q psy2055          13 IPLRVKAIHIVNQPFYFNALYAIFKPFLKQKLRRRNVVRLQTHYCCIGDGKKVFIKKGFL--IKGNC   77 (86)
Q Consensus        13 ~P~R~k~ihiIN~P~~~~~i~~l~k~fl~~Klr~RI~vh~~~~~~~~~~~l~~~id~~~L--pk~~~   77 (86)
                      |=--+|.+|+|+.-|+..++|++++||++.|..+||+-...-      ++|.++|.-+.|  |.+-|
T Consensus       162 ~~KNlKalYvvHptwfikvi~n~~kplIS~KF~rKi~Y~n~l------seL~~~l~l~rL~lP~~v~  222 (467)
T KOG4406|consen  162 FKKNLKALYVVHPTWFIKVIWNLFKPLISLKFTRKIIYFNSL------SELFEALKLNRLKLPPEVL  222 (467)
T ss_pred             HhhhhhheEEecHHHHHHHHHHHHhhhcchhhhceeEEeehH------HHHHHhhhhhhhcCChhhh
Confidence            445689999999999999999999999999999998876554      567666654433  55544


No 8  
>PF04378 RsmJ:  Ribosomal RNA small subunit methyltransferase D, RsmJ;  InterPro: IPR007473 This is a bacterial protein of unknown function, possibly secreted.; PDB: 2OO3_A.
Probab=52.05  E-value=21  Score=26.01  Aligned_cols=30  Identities=20%  Similarity=0.445  Sum_probs=24.6

Q ss_pred             ceEEEEcCChhHHHHHHHHHHHhhHHhhCC
Q psy2055          18 KAIHIVNQPFYFNALYAIFKPFLKQKLRRR   47 (86)
Q Consensus        18 k~ihiIN~P~~~~~i~~l~k~fl~~Klr~R   47 (86)
                      .++.+||.|+-++..+.-+.++|.+.+.+-
T Consensus       206 SGm~iiNPPw~l~~~l~~~l~~L~~~L~~~  235 (245)
T PF04378_consen  206 SGMLIINPPWTLDEELEEILPWLAETLAQD  235 (245)
T ss_dssp             EEEEEES--TTHHHHHHHHHHHHHHHSSTT
T ss_pred             ceEEEEcCCccHHHHHHHHHHHHHHHhCcC
Confidence            467999999999999999999999888765


No 9  
>COG2961 ComJ Protein involved in catabolism of external DNA [General function prediction only]
Probab=40.27  E-value=43  Score=25.06  Aligned_cols=29  Identities=17%  Similarity=0.385  Sum_probs=25.3

Q ss_pred             ceEEEEcCChhHHHHHHHHHHHhhHHhhC
Q psy2055          18 KAIHIVNQPFYFNALYAIFKPFLKQKLRR   46 (86)
Q Consensus        18 k~ihiIN~P~~~~~i~~l~k~fl~~Klr~   46 (86)
                      .+..+||.|+.++.-+.-+.|+|...+-+
T Consensus       237 SGMivINPPwtle~ql~~~LP~L~~~L~~  265 (279)
T COG2961         237 SGMIVINPPWTLEQQLRAALPWLTTLLAQ  265 (279)
T ss_pred             eeEEEECCCccHHHHHHHHHHHHHHHhcc
Confidence            35689999999999999999999887654


No 10 
>PRK05428 HPr kinase/phosphorylase; Provisional
Probab=29.10  E-value=58  Score=24.60  Aligned_cols=37  Identities=22%  Similarity=0.313  Sum_probs=31.5

Q ss_pred             ceEEEEcCChhHHHHHHHHHHHhhHHhhCCeEEecCC
Q psy2055          18 KAIHIVNQPFYFNALYAIFKPFLKQKLRRRNVVRLQT   54 (86)
Q Consensus        18 k~ihiIN~P~~~~~i~~l~k~fl~~Klr~RI~vh~~~   54 (86)
                      ..+-++..|.....+++.+..||++++..+..+||+-
T Consensus       105 ~~ipll~t~~~t~~~i~~l~~~L~~~la~~~~iHg~~  141 (308)
T PRK05428        105 AGIPLLRTPLSTTRLISKLTNYLDRKLAPRTSVHGVL  141 (308)
T ss_pred             cCCcEEEeCCcHHHHHHHHHHHHHHHhhhcceeeeEE
Confidence            3456677788889999999999999999999999853


No 11 
>PF03641 Lysine_decarbox:  Possible lysine decarboxylase;  InterPro: IPR005269 This entry represents a cytokinin-activating enzyme working in the direct activation pathway. It is a phosphoribohydrolase that converts inactive cytokinin nucleotides to the biologically active free-base forms [, ]. The proteins in this entry belong to the LOG family of proteins.; PDB: 1YDH_B 2Q4D_A 1RCU_C 1WEH_B 3SBX_F 3BQ9_B 2PMB_D 3GH1_D 1WEK_C 3QUA_A ....
Probab=27.26  E-value=31  Score=22.30  Aligned_cols=36  Identities=11%  Similarity=0.114  Sum_probs=28.9

Q ss_pred             eEEEEcCChhHHHHHHHH-----HHHhhHHhhCCeEEecCC
Q psy2055          19 AIHIVNQPFYFNALYAIF-----KPFLKQKLRRRNVVRLQT   54 (86)
Q Consensus        19 ~ihiIN~P~~~~~i~~l~-----k~fl~~Klr~RI~vh~~~   54 (86)
                      -+.++|..-+.+-+++++     ..|+++...+.+++..+.
T Consensus        86 Piil~~~~g~w~~l~~~l~~~~~~g~i~~~~~~~~~~~d~~  126 (133)
T PF03641_consen   86 PIILLNIDGFWDPLLEFLDRMIEEGFISPDDLDLLHFVDDP  126 (133)
T ss_dssp             EEEEEECGGCCHHHHHHHHHHHHTTSSSHHHHCCEEEESSH
T ss_pred             CEEEeCCcchHHHHHHHHHHHHHCCCCCHHHCCeEEEeCCH
Confidence            689999887778777876     567788888888888776


No 12 
>KOG1120|consensus
Probab=25.64  E-value=35  Score=22.91  Aligned_cols=38  Identities=16%  Similarity=0.161  Sum_probs=29.9

Q ss_pred             cceEEEEcCChhHHHHHHHHHHHhhHHhhCCeEEecCC
Q psy2055          17 VKAIHIVNQPFYFNALYAIFKPFLKQKLRRRNVVRLQT   54 (86)
Q Consensus        17 ~k~ihiIN~P~~~~~i~~l~k~fl~~Klr~RI~vh~~~   54 (86)
                      .+++-|+=.|+..-+++..-.-|.++|+.+++.+...+
T Consensus        84 qdGv~I~ie~KA~l~liGteMDyvddkL~Sefvf~npn  121 (134)
T KOG1120|consen   84 QDGVRIFIEPKALLTLIGTEMDYVDDKLSSEFVFSNPN  121 (134)
T ss_pred             ecCcEEEEcccceeeeccceehhhhhhhcCceEeeCCC
Confidence            35677888888888888888888899998888875433


No 13 
>PHA02677 hypothetical protein; Provisional
Probab=24.81  E-value=70  Score=20.71  Aligned_cols=19  Identities=37%  Similarity=0.707  Sum_probs=16.8

Q ss_pred             hHHHHHHHHHHHhhHHhhC
Q psy2055          28 YFNALYAIFKPFLKQKLRR   46 (86)
Q Consensus        28 ~~~~i~~l~k~fl~~Klr~   46 (86)
                      +|-.++|++-|=+.||+|+
T Consensus        10 YFILIFNIiVP~I~EKlR~   28 (108)
T PHA02677         10 YFVLIFNILVPGIFEKLRQ   28 (108)
T ss_pred             HHHHHHHHHHHHHHHHHHH
Confidence            5778999999999999985


No 14 
>TIGR00679 hpr-ser Hpr(Ser) kinase/phosphatase. The hprK gene of Enterococcus faecalis encodes a bifunctional enzyme: the HPr kinase/phosphatase
Probab=21.66  E-value=1e+02  Score=23.34  Aligned_cols=37  Identities=8%  Similarity=0.189  Sum_probs=31.2

Q ss_pred             ceEEEEcCChhHHHHHHHHHHHhhHHhhCCeEEecCC
Q psy2055          18 KAIHIVNQPFYFNALYAIFKPFLKQKLRRRNVVRLQT   54 (86)
Q Consensus        18 k~ihiIN~P~~~~~i~~l~k~fl~~Klr~RI~vh~~~   54 (86)
                      ..+-++..+.....+.+.+..||+++++.+..+|++.
T Consensus       105 ~~ip~l~t~~~~~~~~~~l~~~L~~~la~~~~~hg~~  141 (304)
T TIGR00679       105 YQVPILKTDLFSTELSFRLETYLNEQFAPTAAIHGVL  141 (304)
T ss_pred             hCCcEEEeCCcHHHHHHHHHHHHHHhhccceeeeeEE
Confidence            3455677778888899999999999999999999854


No 15 
>PF15156 CLN6:  Ceroid-lipofuscinosis neuronal protein 6
Probab=20.29  E-value=89  Score=23.12  Aligned_cols=25  Identities=44%  Similarity=0.833  Sum_probs=21.1

Q ss_pred             EcCCh---hHHHHHHHHHHHhhHHhhCC
Q psy2055          23 VNQPF---YFNALYAIFKPFLKQKLRRR   47 (86)
Q Consensus        23 IN~P~---~~~~i~~l~k~fl~~Klr~R   47 (86)
                      +|-|+   +|.+++|++.||+=-|+.||
T Consensus        50 lNkPS~gdYfHmaYnviTPfllLKliER   77 (284)
T PF15156_consen   50 LNKPSVGDYFHMAYNVITPFLLLKLIER   77 (284)
T ss_pred             CCCCchHHHHHHHHHhhhHHHHHHHHhh
Confidence            46666   46689999999999999988


Done!