RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy2055
(86 letters)
>3hx3_A Retinaldehyde-binding protein 1; lipid transfer protein,
11-CIS-retinal, bothnia dystrophy, acetylation,
cytoplasm, disease mutation; HET: RET; 1.69A {Homo
sapiens} PDB: 3hy5_A*
Length = 316
Score = 60.9 bits (148), Expect = 6e-13
Identities = 21/48 (43%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
Query: 1 MFYRASVVSLEK-IPLRVKAIHIVNQPFYFNALYAIFKPFLKQKLRRR 47
R V L+ P KAIH ++QP+YF Y + KPFLK KL R
Sbjct: 217 SDLRKMVDMLQDSFPAWFKAIHFIHQPWYFTTTYNVVKPFLKSKLLER 264
>1r5l_A Alpha-TTP, protein (alpha-tocopherol transfer protein); ataxia with
vitamin E deficiency, transport protein; HET: MSE VIV;
1.50A {Homo sapiens} SCOP: a.5.3.1 c.13.1.1 PDB: 1oiz_A*
1oip_A*
Length = 262
Score = 60.4 bits (147), Expect = 7e-13
Identities = 16/56 (28%), Positives = 30/56 (53%), Gaps = 4/56 (7%)
Query: 14 PLRVKAIHIVNQPFYFNALYAIFKPFLKQKLRRRNVVRLQTHYCCIGDGKKVFIKK 69
PL+V+ IH++N+P F+A++++ KPFL +K++ R+ H
Sbjct: 172 PLKVRGIHLINEPVIFHAVFSMIKPFLTEKIKE----RIHMHGNNYKQSLLQHFPD 223
>1olm_A SEC14-like protein 2; lipid-binding protein, cholesterol
biosynthesis, oxidized vitamin E, lipid-binding,
transport, transcription regulation; HET: VTQ; 1.95A
{Homo sapiens} SCOP: a.5.3.1 b.132.1.1 c.13.1.1 PDB:
1o6u_A* 1olm_E*
Length = 403
Score = 49.2 bits (117), Expect = 1e-08
Identities = 11/34 (32%), Positives = 18/34 (52%)
Query: 14 PLRVKAIHIVNQPFYFNALYAIFKPFLKQKLRRR 47
P +K + +V P F Y + KPFL + R++
Sbjct: 183 PETLKRLFVVKAPKLFPVAYNLIKPFLSEDTRKK 216
>3q8g_A CRAL-TRIO domain-containing protein YKL091C; string motif,
signaling protein, directed evoluti SEC14, phospholipid
transporter, lipid; HET: PEE; 1.80A {Saccharomyces
cerevisiae} PDB: 3b7n_A* 3b74_A* 3b7q_A* 3b7z_A*
Length = 320
Score = 39.8 bits (93), Expect = 2e-05
Identities = 10/37 (27%), Positives = 20/37 (54%)
Query: 14 PLRVKAIHIVNQPFYFNALYAIFKPFLKQKLRRRNVV 50
P R+ +I++ PF F+ ++ + KPFL + +
Sbjct: 218 PERMGKFYIIHSPFGFSTMFKMVKPFLDPVTVSKIFI 254
>1aua_A Phosphatidylinositol transfer protein SEC14P; phospholipid-binding
protein, peripheral golgi membrane protein, phospholipid
exchange; HET: BOG; 2.50A {Saccharomyces cerevisiae}
SCOP: a.5.3.1 c.13.1.1
Length = 296
Score = 39.3 bits (92), Expect = 3e-05
Identities = 12/33 (36%), Positives = 18/33 (54%)
Query: 14 PLRVKAIHIVNQPFYFNALYAIFKPFLKQKLRR 46
P R+ +I+N PF F+ + +FKPFL
Sbjct: 203 PERMGKFYIINAPFGFSTAFRLFKPFLDPVTVS 235
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 30.0 bits (67), Expect = 0.074
Identities = 15/91 (16%), Positives = 26/91 (28%), Gaps = 24/91 (26%)
Query: 2 FYRASVVSLEKIP-------LRV---KAIHIVNQPF--------YFN---ALYAIFKPFL 40
+ A +++ R +V F YF LY + +
Sbjct: 126 YITARIMAKRPFDKKSNSALFRAVGEGNAQLVAI-FGGQGNTDDYFEELRDLYQTYHVLV 184
Query: 41 KQKLRRRNVVRLQTHYCCIGDGKKVFIKKGF 71
L + + L D +KVF +G
Sbjct: 185 GD-LIKFSAETLSELIRTTLDAEKVF-TQGL 213
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 28.3 bits (62), Expect = 0.29
Identities = 7/18 (38%), Positives = 12/18 (66%), Gaps = 1/18 (5%)
Query: 29 FNALYAIFKPFLKQKLRR 46
F ++ F+ FL+QK+R
Sbjct: 493 FRMVFLDFR-FLEQKIRH 509
Score = 26.4 bits (57), Expect = 1.4
Identities = 7/42 (16%), Positives = 16/42 (38%), Gaps = 9/42 (21%)
Query: 21 HIVNQPFYFNALYAIFKPFLKQKLRRRNVVR------LQTHY 56
HI+ + +F L + + +V+ L+ +Y
Sbjct: 53 HIIMSKDAVSGTLRLFWTLLSK---QEEMVQKFVEEVLRINY 91
>2a67_A Isochorismatase family protein; structural genomics, PSI, protein
structure initiative, MIDW center for structural
genomics, MCSG; 2.00A {Enterococcus faecalis}
Length = 167
Score = 26.4 bits (59), Expect = 0.84
Identities = 7/24 (29%), Positives = 9/24 (37%), Gaps = 5/24 (20%)
Query: 40 LKQKLRRRNVVRL-----QTHYCC 58
L L + V L QT +C
Sbjct: 92 LNDLLTEQAVQTLEIAGVQTEFCV 115
>3k1f_M Transcription initiation factor IIB; RNA polymerase II, TFIIB,
transcription factor, DNA-binding, DNA-directed RNA
polymerase; 4.30A {Saccharomyces cerevisiae}
Length = 197
Score = 24.2 bits (52), Expect = 5.7
Identities = 6/35 (17%), Positives = 13/35 (37%), Gaps = 9/35 (25%)
Query: 57 C--CIGDGKKVFI---KKGFLIKGNCNNRGLIVPE 86
C C + +G ++ C GL++ +
Sbjct: 24 CPEC-KVYPPKIVERFSEGDVV---CALCGLVLSD 54
>1ukc_A ESTA, esterase; fungi, A/B hydrolase fold, acetylcholinesterase, H;
HET: NAG MAN; 2.10A {Aspergillus niger} SCOP: c.69.1.17
Length = 522
Score = 24.2 bits (53), Expect = 6.3
Identities = 7/32 (21%), Positives = 11/32 (34%)
Query: 3 YRASVVSLEKIPLRVKAIHIVNQPFYFNALYA 34
YR +++ I + H P F A
Sbjct: 406 YRVNIIDESNIAGGIGVPHTFELPAIFGAGST 437
>2h1v_A Ferrochelatase; rossman fold, PI-helix, lyase; 1.20A {Bacillus
subtilis} PDB: 2hk6_A 1c1h_A* 1ld3_A 1n0i_A 1ak1_A
3goq_A 1doz_A 2q2n_A* 3m4z_A 2h1w_A 2ac2_A 2q3j_A*
2ac4_A 2q2o_A* 1c9e_A* 2c8j_A
Length = 310
Score = 23.6 bits (52), Expect = 9.1
Identities = 6/31 (19%), Positives = 9/31 (29%), Gaps = 5/31 (16%)
Query: 37 KPFLKQKLRRRNVVR-----LQTHYCCIGDG 62
+ + R R L+ Y IG
Sbjct: 23 ERYYTHIRRGRKPEPEMLQDLKDRYEAIGGI 53
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.332 0.147 0.456
Gapped
Lambda K H
0.267 0.0629 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,338,681
Number of extensions: 66077
Number of successful extensions: 128
Number of sequences better than 10.0: 1
Number of HSP's gapped: 126
Number of HSP's successfully gapped: 12
Length of query: 86
Length of database: 6,701,793
Length adjustment: 54
Effective length of query: 32
Effective length of database: 5,194,059
Effective search space: 166209888
Effective search space used: 166209888
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 51 (23.6 bits)