RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy2055
         (86 letters)



>d1r5la2 c.13.1.1 (A:91-275) Alpha-tocopherol transfer protein
           {Human (Homo sapiens) [TaxId: 9606]}
          Length = 185

 Score = 40.8 bits (95), Expect = 3e-06
 Identities = 17/69 (24%), Positives = 35/69 (50%), Gaps = 4/69 (5%)

Query: 1   MFYRASVVSLEKIPLRVKAIHIVNQPFYFNALYAIFKPFLKQKLRRRNVVRLQTHYCCIG 60
           +  + + V  +  PL+V+ IH++N+P  F+A++++ KPFL +K++     R+  H     
Sbjct: 85  VAKKIAAVLTDSFPLKVRGIHLINEPVIFHAVFSMIKPFLTEKIKE----RIHMHGNNYK 140

Query: 61  DGKKVFIKK 69
                    
Sbjct: 141 QSLLQHFPD 149


>d1olma3 c.13.1.1 (A:76-274) Supernatant protein factor (SPF),
           middle domain {Human (Homo sapiens) [TaxId: 9606]}
          Length = 199

 Score = 37.4 bits (86), Expect = 4e-05
 Identities = 13/50 (26%), Positives = 23/50 (46%)

Query: 1   MFYRASVVSLEKIPLRVKAIHIVNQPFYFNALYAIFKPFLKQKLRRRNVV 50
            +     +  E  P  +K + +V  P  F   Y + KPFL +  R++ +V
Sbjct: 95  AYGEFLCMFEENYPETLKRLFVVKAPKLFPVAYNLIKPFLSEDTRKKIMV 144


>d1auaa2 c.13.1.1 (A:97-299) C-terminal domain of
           phosphatidylinositol transfer protein sec14p {Baker's
           yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
          Length = 203

 Score = 37.4 bits (86), Expect = 6e-05
 Identities = 12/37 (32%), Positives = 20/37 (54%)

Query: 14  PLRVKAIHIVNQPFYFNALYAIFKPFLKQKLRRRNVV 50
           P R+   +I+N PF F+  + +FKPFL      +  +
Sbjct: 110 PERMGKFYIINAPFGFSTAFRLFKPFLDPVTVSKIFI 146


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.332    0.147    0.456 

Gapped
Lambda     K      H
   0.267   0.0521    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 343,666
Number of extensions: 13914
Number of successful extensions: 41
Number of sequences better than 10.0: 1
Number of HSP's gapped: 41
Number of HSP's successfully gapped: 6
Length of query: 86
Length of database: 2,407,596
Length adjustment: 51
Effective length of query: 35
Effective length of database: 1,707,366
Effective search space: 59757810
Effective search space used: 59757810
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 47 (22.4 bits)