BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy2056
(220 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3H0L|A Chain A, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0L|D Chain D, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0L|G Chain G, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0L|J Chain J, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0L|M Chain M, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0L|P Chain P, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0L|S Chain S, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0L|V Chain V, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0M|A Chain A, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0M|D Chain D, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0M|G Chain G, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0M|J Chain J, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0M|M Chain M, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0M|P Chain P, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0M|S Chain S, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0M|V Chain V, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0R|A Chain A, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0R|D Chain D, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0R|G Chain G, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0R|J Chain J, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0R|M Chain M, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0R|P Chain P, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0R|S Chain S, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0R|V Chain V, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
Length = 478
Score = 36.6 bits (83), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 43/79 (54%), Gaps = 13/79 (16%)
Query: 136 LIRTKQVSCVKVVEAFITRIRQVNPMLNAVVDERFNLALEEAKQVDILLAASTKSVEEIG 195
L++ +VS +VVE+F R Q + A + + AL++A+ S++E
Sbjct: 13 LLKRGEVSPKEVVESFYDRYNQTEEKVKAYITPLYGKALKQAE-----------SLKE-- 59
Query: 196 RDTPLLGVPLTVKESVAVK 214
R+ PL G+P+ VK+++ V+
Sbjct: 60 RELPLFGIPIAVKDNILVE 78
>pdb|3A2Q|A Chain A, Structure Of 6-Aminohexanoate Cyclic Dimer Hydrolase
Complexed With Substrate
Length = 493
Score = 35.0 bits (79), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 31/53 (58%)
Query: 126 LLNSAQKTALLIRTKQVSCVKVVEAFITRIRQVNPMLNAVVDERFNLALEEAK 178
L A A L+R+ ++S +++EA I ++ VNP +NAV+ F A E++
Sbjct: 6 LWQDATAQAELVRSGEISRTELLEATIAHVQAVNPEINAVIIPLFEKARRESE 58
>pdb|3A2P|A Chain A, Structure Of 6-Aminohexanoate Cyclic Dimer Hydrolase
Length = 493
Score = 35.0 bits (79), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 31/53 (58%)
Query: 126 LLNSAQKTALLIRTKQVSCVKVVEAFITRIRQVNPMLNAVVDERFNLALEEAK 178
L A A L+R+ ++S +++EA I ++ VNP +NAV+ F A E++
Sbjct: 6 LWQDATAQAELVRSGEISRTELLEATIAHVQAVNPEINAVIIPLFEKARRESE 58
>pdb|4GPT|C Chain C, Crystal Structure Of Kpt251 In Complex With
Crm1-ran-ranbp1
pdb|4GMX|C Chain C, Crystal Structure Of Kpt185 In Complex With
Crm1-Ran-Ranbp1
Length = 1060
Score = 29.6 bits (65), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 40/71 (56%), Gaps = 10/71 (14%)
Query: 137 IRTKQVSCVKVVEAFITRIRQ--------VNPMLNAVVDERFNLALEEAKQVDILLAAST 188
+RT + +K+VE +I++ R V P+LNAV+++ N + +A+ ++L +T
Sbjct: 761 LRTIKKEILKLVETYISKARNLDDVVKVLVEPLLNAVLEDYMN-NVPDARDAEVLNCMTT 819
Query: 189 KSVEEIGRDTP 199
VE++G P
Sbjct: 820 -VVEKVGHMIP 829
>pdb|4HB4|C Chain C, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1(537dltvk541/glceq)-ran-ranbp1
Length = 1023
Score = 29.6 bits (65), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 40/71 (56%), Gaps = 10/71 (14%)
Query: 137 IRTKQVSCVKVVEAFITRIRQ--------VNPMLNAVVDERFNLALEEAKQVDILLAAST 188
+RT + +K+VE +I++ R V P+LNAV+++ N + +A+ ++L +T
Sbjct: 724 LRTIKKEILKLVETYISKARNLDDVVKVLVEPLLNAVLEDYMN-NVPDARDAEVLNCMTT 782
Query: 189 KSVEEIGRDTP 199
VE++G P
Sbjct: 783 -VVEKVGHMIP 792
>pdb|4HB3|C Chain C, Crystal Structure Of Crm1(t539s)-ran-ranbp1 Soaked In
Excess Crm1 Inhibitor Leptomycin B
Length = 1023
Score = 29.6 bits (65), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 40/71 (56%), Gaps = 10/71 (14%)
Query: 137 IRTKQVSCVKVVEAFITRIRQ--------VNPMLNAVVDERFNLALEEAKQVDILLAAST 188
+RT + +K+VE +I++ R V P+LNAV+++ N + +A+ ++L +T
Sbjct: 724 LRTIKKEILKLVETYISKARNLDDVVKVLVEPLLNAVLEDYMN-NVPDARDAEVLNCMTT 782
Query: 189 KSVEEIGRDTP 199
VE++G P
Sbjct: 783 -VVEKVGHMIP 792
>pdb|3VYC|A Chain A, Crystal Structure Of Unliganded Saccharomyces Cerevisiae
Crm1 (Xpo1p)
Length = 1033
Score = 29.6 bits (65), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 40/71 (56%), Gaps = 10/71 (14%)
Query: 137 IRTKQVSCVKVVEAFITRIRQ--------VNPMLNAVVDERFNLALEEAKQVDILLAAST 188
+RT + +K+VE +I++ R V P+LNAV+++ N + +A+ ++L +T
Sbjct: 722 LRTIKKEILKLVETYISKARNLDDVVKVLVEPLLNAVLEDYMN-NVPDARDAEVLNCMTT 780
Query: 189 KSVEEIGRDTP 199
VE++G P
Sbjct: 781 -VVEKVGHMIP 790
>pdb|4HAZ|C Chain C, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1(r543s,k548e,k579q)-ran-ranbp1
Length = 1023
Score = 29.6 bits (65), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 40/71 (56%), Gaps = 10/71 (14%)
Query: 137 IRTKQVSCVKVVEAFITRIRQ--------VNPMLNAVVDERFNLALEEAKQVDILLAAST 188
+RT + +K+VE +I++ R V P+LNAV+++ N + +A+ ++L +T
Sbjct: 724 LRTIKKEILKLVETYISKARNLDDVVKVLVEPLLNAVLEDYMN-NVPDARDAEVLNCMTT 782
Query: 189 KSVEEIGRDTP 199
VE++G P
Sbjct: 783 -VVEKVGHMIP 792
>pdb|4HAY|C Chain C, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1(k548e,k579q)-ran-ranbp1
Length = 1023
Score = 29.6 bits (65), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 40/71 (56%), Gaps = 10/71 (14%)
Query: 137 IRTKQVSCVKVVEAFITRIRQ--------VNPMLNAVVDERFNLALEEAKQVDILLAAST 188
+RT + +K+VE +I++ R V P+LNAV+++ N + +A+ ++L +T
Sbjct: 724 LRTIKKEILKLVETYISKARNLDDVVKVLVEPLLNAVLEDYMN-NVPDARDAEVLNCMTT 782
Query: 189 KSVEEIGRDTP 199
VE++G P
Sbjct: 783 -VVEKVGHMIP 792
>pdb|4HB0|C Chain C, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With
Crm1(k541q,k542q,r543s,k545q,k548q,k579q)-ran-ranbp1
Length = 1023
Score = 29.6 bits (65), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 40/71 (56%), Gaps = 10/71 (14%)
Query: 137 IRTKQVSCVKVVEAFITRIRQ--------VNPMLNAVVDERFNLALEEAKQVDILLAAST 188
+RT + +K+VE +I++ R V P+LNAV+++ N + +A+ ++L +T
Sbjct: 724 LRTIKKEILKLVETYISKARNLDDVVKVLVEPLLNAVLEDYMN-NVPDARDAEVLNCMTT 782
Query: 189 KSVEEIGRDTP 199
VE++G P
Sbjct: 783 -VVEKVGHMIP 792
>pdb|4HAX|C Chain C, Crystal Structure Of Crm1 Inhibitor Ratjadone A In Complex
With Crm1(k579a)-ran-ranbp1
Length = 1023
Score = 29.6 bits (65), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 40/71 (56%), Gaps = 10/71 (14%)
Query: 137 IRTKQVSCVKVVEAFITRIRQ--------VNPMLNAVVDERFNLALEEAKQVDILLAAST 188
+RT + +K+VE +I++ R V P+LNAV+++ N + +A+ ++L +T
Sbjct: 724 LRTIKKEILKLVETYISKARNLDDVVKVLVEPLLNAVLEDYMN-NVPDARDAEVLNCMTT 782
Query: 189 KSVEEIGRDTP 199
VE++G P
Sbjct: 783 -VVEKVGHMIP 792
>pdb|4HAW|C Chain C, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1(k548a)-ran-ranbp1
Length = 1023
Score = 29.6 bits (65), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 40/71 (56%), Gaps = 10/71 (14%)
Query: 137 IRTKQVSCVKVVEAFITRIRQ--------VNPMLNAVVDERFNLALEEAKQVDILLAAST 188
+RT + +K+VE +I++ R V P+LNAV+++ N + +A+ ++L +T
Sbjct: 724 LRTIKKEILKLVETYISKARNLDDVVKVLVEPLLNAVLEDYMN-NVPDARDAEVLNCMTT 782
Query: 189 KSVEEIGRDTP 199
VE++G P
Sbjct: 783 -VVEKVGHMIP 792
>pdb|3M1I|C Chain C, Crystal Structure Of Yeast Crm1 (Xpo1p) In Complex With
Yeas (Yrb1p) And Yeast Rangtp (Gsp1pgtp)
Length = 1049
Score = 29.6 bits (65), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 40/71 (56%), Gaps = 10/71 (14%)
Query: 137 IRTKQVSCVKVVEAFITRIRQ--------VNPMLNAVVDERFNLALEEAKQVDILLAAST 188
+RT + +K+VE +I++ R V P+LNAV+++ N + +A+ ++L +T
Sbjct: 724 LRTIKKEILKLVETYISKARNLDDVVKVLVEPLLNAVLEDYMN-NVPDARDAEVLNCMTT 782
Query: 189 KSVEEIGRDTP 199
VE++G P
Sbjct: 783 -VVEKVGHMIP 792
>pdb|4HB2|C Chain C, Crystal Structure Of Crm1-ran-ranbp1
Length = 1023
Score = 29.6 bits (65), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 40/71 (56%), Gaps = 10/71 (14%)
Query: 137 IRTKQVSCVKVVEAFITRIRQ--------VNPMLNAVVDERFNLALEEAKQVDILLAAST 188
+RT + +K+VE +I++ R V P+LNAV+++ N + +A+ ++L +T
Sbjct: 724 LRTIKKEILKLVETYISKARNLDDVVKVLVEPLLNAVLEDYMN-NVPDARDAEVLNCMTT 782
Query: 189 KSVEEIGRDTP 199
VE++G P
Sbjct: 783 -VVEKVGHMIP 792
>pdb|4HAT|C Chain C, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1- Ran-ranbp1
pdb|4HAU|C Chain C, Crystal Structure Of Crm1 Inhibitor Ratjadone A In Complex
With Crm1- Ran-ranbp1
pdb|4HAV|C Chain C, Crystal Structure Of Crm1 Inhibitor Anguinomycin A In
Complex With Crm1-ran-ranbp1
Length = 1023
Score = 29.6 bits (65), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 40/71 (56%), Gaps = 10/71 (14%)
Query: 137 IRTKQVSCVKVVEAFITRIRQ--------VNPMLNAVVDERFNLALEEAKQVDILLAAST 188
+RT + +K+VE +I++ R V P+LNAV+++ N + +A+ ++L +T
Sbjct: 724 LRTIKKEILKLVETYISKARNLDDVVKVLVEPLLNAVLEDYMN-NVPDARDAEVLNCMTT 782
Query: 189 KSVEEIGRDTP 199
VE++G P
Sbjct: 783 -VVEKVGHMIP 792
>pdb|2CFU|A Chain A, Crystal Structure Of Sdsa1, An Alkylsulfatase From
Pseudomonas Aeruginosa, In Complex With
1-Decane-Sulfonic- Acid.
pdb|2CFZ|A Chain A, Crystal Structure Of Sdsa1, An Alkylsulfatase From
Pseudomonas Aeruginosa, In Complex With 1-Dodecanol
pdb|2CG2|A Chain A, Crystal Structure Of Sdsa1, An Alkylsulfatase From
Pseudomonas Aeruginosa, In Complex With Sulfate
Length = 658
Score = 27.3 bits (59), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 19/36 (52%)
Query: 184 LAASTKSVEEIGRDTPLLGVPLTVKESVAVKVPAPM 219
L A T+ +E G D L GVP T + + + PA M
Sbjct: 250 LLAPTRLIEGEGEDLVLDGVPFTFQNTPGTESPAEM 285
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.326 0.138 0.404
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,018,374
Number of Sequences: 62578
Number of extensions: 160796
Number of successful extensions: 781
Number of sequences better than 100.0: 16
Number of HSP's better than 100.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 754
Number of HSP's gapped (non-prelim): 16
length of query: 220
length of database: 14,973,337
effective HSP length: 95
effective length of query: 125
effective length of database: 9,028,427
effective search space: 1128553375
effective search space used: 1128553375
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 49 (23.5 bits)