Query psy2056
Match_columns 220
No_of_seqs 229 out of 1176
Neff 4.7
Searched_HMMs 46136
Date Fri Aug 16 23:06:07 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy2056.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/2056hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK09201 amidase; Provisional 99.7 4.4E-16 9.6E-21 147.2 10.7 84 125-215 4-87 (465)
2 PRK07487 amidase; Provisional 99.6 6.2E-16 1.4E-20 146.3 10.6 85 124-215 4-88 (469)
3 PRK07042 amidase; Provisional 99.6 7E-16 1.5E-20 145.7 10.5 84 125-215 4-87 (464)
4 TIGR02715 amido_AtzE amidohydr 99.6 7.7E-16 1.7E-20 145.0 10.6 80 129-215 1-80 (452)
5 PRK06169 putative amidase; Pro 99.6 8.2E-16 1.8E-20 145.3 10.5 85 124-215 3-87 (466)
6 PRK06170 amidase; Provisional 99.6 9.5E-16 2.1E-20 145.5 10.2 85 123-215 7-91 (490)
7 PRK07486 amidase; Provisional 99.6 1.8E-15 3.9E-20 143.6 10.4 87 122-215 6-93 (484)
8 PRK08137 amidase; Provisional 99.6 2.1E-15 4.6E-20 143.5 10.0 87 124-218 2-91 (497)
9 PRK07056 amidase; Provisional 99.6 5E-15 1.1E-19 139.7 10.4 80 129-215 7-87 (454)
10 PRK06102 hypothetical protein; 99.6 5.8E-15 1.3E-19 139.2 10.6 82 126-215 4-85 (452)
11 PRK06061 amidase; Provisional 99.6 6E-15 1.3E-19 140.3 10.6 84 124-215 14-97 (483)
12 PRK12470 amidase; Provisional 99.6 5.7E-15 1.2E-19 139.7 10.3 83 125-215 6-88 (462)
13 KOG1212|consensus 99.6 9.4E-15 2E-19 142.1 10.2 123 85-214 5-134 (560)
14 PRK07869 amidase; Provisional 99.5 1.1E-14 2.4E-19 137.5 7.8 80 123-215 10-89 (468)
15 PRK06828 amidase; Provisional 99.5 2.3E-14 4.9E-19 137.3 9.9 81 127-215 12-95 (491)
16 PRK07488 indole acetimide hydr 99.5 2.4E-14 5.2E-19 135.5 10.0 84 123-215 6-89 (472)
17 PRK06707 amidase; Provisional 99.5 5.7E-14 1.2E-18 136.1 10.2 85 125-218 68-155 (536)
18 PRK06565 amidase; Validated 99.5 6.3E-14 1.4E-18 136.9 10.1 84 124-215 3-91 (566)
19 COG0154 GatA Asp-tRNAAsn/Glu-t 99.5 1E-13 2.2E-18 132.7 9.3 85 124-215 3-89 (475)
20 PRK06529 amidase; Provisional 99.5 8.7E-14 1.9E-18 132.1 8.4 76 127-215 3-79 (482)
21 PRK11910 amidase; Provisional 99.5 1.3E-13 2.9E-18 135.7 9.8 82 124-215 161-245 (615)
22 TIGR00132 gatA glutamyl-tRNA(G 99.5 9.7E-14 2.1E-18 130.8 7.6 71 133-215 1-71 (460)
23 PRK00012 gatA aspartyl/glutamy 99.5 1.5E-13 3.2E-18 129.5 8.0 71 137-215 1-71 (459)
24 PF01425 Amidase: Amidase; In 99.4 2.8E-13 6E-18 121.5 5.4 62 146-214 1-62 (441)
25 PRK08186 allophanate hydrolase 99.4 1.2E-12 2.5E-17 128.5 9.3 78 127-215 6-84 (600)
26 PRK05962 amidase; Validated 99.2 4.4E-11 9.5E-16 112.2 7.0 60 149-215 2-61 (424)
27 PRK07235 amidase; Provisional 98.9 1.4E-09 3E-14 104.6 4.8 84 123-215 20-103 (502)
28 KOG1211|consensus 98.4 4.7E-07 1E-11 88.0 5.4 71 137-215 27-97 (506)
29 PF09301 DUF1970: Domain of un 45.0 10 0.00023 29.8 0.9 22 28-49 5-26 (117)
30 PRK12333 nucleoside triphospha 27.5 1.2E+02 0.0026 26.9 4.8 25 138-162 71-95 (204)
31 TIGR00444 mazG MazG family pro 23.6 2.5E+02 0.0054 25.4 6.2 36 129-164 56-92 (248)
32 PRK09562 mazG nucleoside triph 23.5 1.7E+02 0.0038 26.5 5.2 32 132-163 73-105 (262)
33 PF15176 LRR19-TM: Leucine-ric 22.4 1.1E+02 0.0025 24.4 3.3 18 44-61 41-58 (102)
No 1
>PRK09201 amidase; Provisional
Probab=99.66 E-value=4.4e-16 Score=147.23 Aligned_cols=84 Identities=36% Similarity=0.390 Sum_probs=78.4
Q ss_pred ccccCHHHHHHHHHcCCCCHHHHHHHHHHHHHhhCCCcceEEeeChhHHHHHHHHHHHHHHcCCccccccCCCCCcccce
Q psy2056 125 LLLNSAQKTALLIRTKQVSCVKVVEAFITRIRQVNPMLNAVVDERFNLALEEAKQVDILLAASTKSVEEIGRDTPLLGVP 204 (220)
Q Consensus 125 Ll~lSateLa~~IRsgelTs~EVVeAyIeRIeevNp~LNA~V~~rfE~AL~eAr~lD~r~a~g~~~~~~l~~~gPLlGVP 204 (220)
+..+++.++++.+++|++|++|+++++++||++.|+.+|||++.++|+|+++|++.|+++++|.. .|||+|||
T Consensus 4 ~~~~~~~~l~~~~~~g~~t~~ev~~~~l~ri~~~~~~lna~~~~~~d~al~~A~~~d~~~~~g~~-------~gpL~GvP 76 (465)
T PRK09201 4 LSSLSAAEIAAAVRAGELSARAVAQATLARIARANPQLNAFTAVTAERALAEAARIDAARAAGEP-------LGPLAGVP 76 (465)
T ss_pred cccCCHHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCCceEEEEcCHHHHHHHHHHHHHHHHcCCC-------CCCcCCce
Confidence 55679999999999999999999999999999999999999999999999999999998887753 69999999
Q ss_pred eeeeecccccC
Q psy2056 205 LTVKESVAVKV 215 (220)
Q Consensus 205 ftIKDnIdVk~ 215 (220)
|+|||||+++.
T Consensus 77 i~vKD~~~v~G 87 (465)
T PRK09201 77 FAVKNLFDVAG 87 (465)
T ss_pred EEEEeccccCC
Confidence 99999999984
No 2
>PRK07487 amidase; Provisional
Probab=99.65 E-value=6.2e-16 Score=146.35 Aligned_cols=85 Identities=40% Similarity=0.479 Sum_probs=78.9
Q ss_pred cccccCHHHHHHHHHcCCCCHHHHHHHHHHHHHhhCCCcceEEeeChhHHHHHHHHHHHHHHcCCccccccCCCCCcccc
Q psy2056 124 QLLLNSAQKTALLIRTKQVSCVKVVEAFITRIRQVNPMLNAVVDERFNLALEEAKQVDILLAASTKSVEEIGRDTPLLGV 203 (220)
Q Consensus 124 ~Ll~lSateLa~~IRsgelTs~EVVeAyIeRIeevNp~LNA~V~~rfE~AL~eAr~lD~r~a~g~~~~~~l~~~gPLlGV 203 (220)
++...++.++++.+++|++|++|+++++++||++.|+.+|||++.++|+|+++|++.|+++++|.. .+||+||
T Consensus 4 ~~~~~~~~~l~~~l~~g~~t~~ev~~~~l~ri~~~~~~lna~~~~~~e~al~~A~~~d~~~~~g~~-------~gpL~Gv 76 (469)
T PRK07487 4 ELWRLSAAELAAAVRSRDVSAREAAEAALARLDAVNPAINAVVDHRPEEALAQADAVDAARARGDD-------PGPLAGV 76 (469)
T ss_pred hhhhCCHHHHHHHHHcCCCCHHHHHHHHHHHHHHHCCCccEEEEeCHHHHHHHHHHhHHHHhcCCC-------CCCcCCC
Confidence 356779999999999999999999999999999999999999999999999999999998877753 6899999
Q ss_pred eeeeeecccccC
Q psy2056 204 PLTVKESVAVKV 215 (220)
Q Consensus 204 PftIKDnIdVk~ 215 (220)
||+|||+|+|+.
T Consensus 77 Pi~vKD~~~v~G 88 (469)
T PRK07487 77 PVTVKVNVDQAG 88 (469)
T ss_pred EEEEecccccCC
Confidence 999999999983
No 3
>PRK07042 amidase; Provisional
Probab=99.64 E-value=7e-16 Score=145.67 Aligned_cols=84 Identities=31% Similarity=0.286 Sum_probs=78.2
Q ss_pred ccccCHHHHHHHHHcCCCCHHHHHHHHHHHHHhhCCCcceEEeeChhHHHHHHHHHHHHHHcCCccccccCCCCCcccce
Q psy2056 125 LLLNSAQKTALLIRTKQVSCVKVVEAFITRIRQVNPMLNAVVDERFNLALEEAKQVDILLAASTKSVEEIGRDTPLLGVP 204 (220)
Q Consensus 125 Ll~lSateLa~~IRsgelTs~EVVeAyIeRIeevNp~LNA~V~~rfE~AL~eAr~lD~r~a~g~~~~~~l~~~gPLlGVP 204 (220)
+...++.++++.+++|++|++|++++|++||++.|+.+|||++.++|+|+++|++.|+++++|.. .|||+|||
T Consensus 4 ~~~~~~~~l~~~~~~g~~s~~el~~~~l~ri~~~~~~lna~~~~~~d~al~~A~~~d~~~~~g~~-------~gpL~GvP 76 (464)
T PRK07042 4 LHDLSAVELLAGYRARSLSPVEVTEAVLAHIARWEPHLNALYAFDPEAARAAARASTARWAKGEP-------LGPLDGVP 76 (464)
T ss_pred hhhCCHHHHHHHHHcCCCCHHHHHHHHHHHHHHHCCCccEEEEcCHHHHHHHHHHHHHHHHcCCC-------CCCcCCCE
Confidence 45679999999999999999999999999999999999999999999999999999998887753 68999999
Q ss_pred eeeeecccccC
Q psy2056 205 LTVKESVAVKV 215 (220)
Q Consensus 205 ftIKDnIdVk~ 215 (220)
|+|||||+|+.
T Consensus 77 i~vKD~~~v~G 87 (464)
T PRK07042 77 VTIKENIATRG 87 (464)
T ss_pred EEEEcccccCC
Confidence 99999999984
No 4
>TIGR02715 amido_AtzE amidohydrolase, AtzE family. Members of this protein family are aminohydrolases related to, but distinct from, glutamyl-tRNA(Gln) amidotransferase subunit A. The best characterized member is the biuret hydrolase of Pseudomonas sp. ADP, which hydrolyzes ammonia from the three-nitrogen compound biuret to yield allophanate. Allophanate is also an intermediate in urea degradation by the urea carboxylase/allophanate hydrolase pathway, an alternative to urease.
Probab=99.64 E-value=7.7e-16 Score=144.96 Aligned_cols=80 Identities=38% Similarity=0.383 Sum_probs=75.1
Q ss_pred CHHHHHHHHHcCCCCHHHHHHHHHHHHHhhCCCcceEEeeChhHHHHHHHHHHHHHHcCCccccccCCCCCcccceeeee
Q psy2056 129 SAQKTALLIRTKQVSCVKVVEAFITRIRQVNPMLNAVVDERFNLALEEAKQVDILLAASTKSVEEIGRDTPLLGVPLTVK 208 (220)
Q Consensus 129 SateLa~~IRsgelTs~EVVeAyIeRIeevNp~LNA~V~~rfE~AL~eAr~lD~r~a~g~~~~~~l~~~gPLlGVPftIK 208 (220)
|+.++++.+++|++|++|+++++++||++.|+.+||+++.++|+|+++|++.|+++++|.. .|||+||||+||
T Consensus 1 ~~~~l~~~l~~g~~s~~ev~~~~l~ri~~~~~~lna~~~~~~~~al~~A~~~d~~~~~g~~-------~gpL~GvPv~vK 73 (452)
T TIGR02715 1 SIVEIAGAIRSGRVSARAVAEATLARINQADGGLNAFTAVTAERALADAARIDADLAAGSP-------LGPLAGVPFAVK 73 (452)
T ss_pred CHHHHHHHHHcCCCCHHHHHHHHHHHHHHHCCCccEEEEeCHHHHHHHHHHHHHHHHCCCC-------CCCcCCCeEEEE
Confidence 5789999999999999999999999999999999999999999999999999998887753 699999999999
Q ss_pred ecccccC
Q psy2056 209 ESVAVKV 215 (220)
Q Consensus 209 DnIdVk~ 215 (220)
|||+++.
T Consensus 74 D~~~v~G 80 (452)
T TIGR02715 74 NLFDVAG 80 (452)
T ss_pred eccccCC
Confidence 9999983
No 5
>PRK06169 putative amidase; Provisional
Probab=99.64 E-value=8.2e-16 Score=145.27 Aligned_cols=85 Identities=22% Similarity=0.203 Sum_probs=78.6
Q ss_pred cccccCHHHHHHHHHcCCCCHHHHHHHHHHHHHhhCCCcceEEeeChhHHHHHHHHHHHHHHcCCccccccCCCCCcccc
Q psy2056 124 QLLLNSAQKTALLIRTKQVSCVKVVEAFITRIRQVNPMLNAVVDERFNLALEEAKQVDILLAASTKSVEEIGRDTPLLGV 203 (220)
Q Consensus 124 ~Ll~lSateLa~~IRsgelTs~EVVeAyIeRIeevNp~LNA~V~~rfE~AL~eAr~lD~r~a~g~~~~~~l~~~gPLlGV 203 (220)
.+...++.++++.+++|++|++|+++++++||++.|+.+|||++.++|+|+++|+++|+++++|.. .|||+||
T Consensus 3 ~~~~~~~~~l~~~l~~g~~t~~ev~~~~l~ri~~~~~~lna~~~~~~~~al~~A~~~d~~~~~g~~-------~gpL~Gv 75 (466)
T PRK06169 3 DLADLTAVELLAAYRRGELSPVEATQAVLDRIDRRDPAVNAFCLVDAEGALAAARASEERWRRGEP-------CGLLDGV 75 (466)
T ss_pred chhhCCHHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCCCCEEEEeCHHHHHHHHHHHHHHHhcCCC-------CCCcCCc
Confidence 355678999999999999999999999999999999999999999999999999999998887752 6899999
Q ss_pred eeeeeecccccC
Q psy2056 204 PLTVKESVAVKV 215 (220)
Q Consensus 204 PftIKDnIdVk~ 215 (220)
||+|||||+|+.
T Consensus 76 Pi~vKD~~~v~G 87 (466)
T PRK06169 76 PVSIKDIFLTRG 87 (466)
T ss_pred eEEEecccccCC
Confidence 999999999983
No 6
>PRK06170 amidase; Provisional
Probab=99.63 E-value=9.5e-16 Score=145.50 Aligned_cols=85 Identities=32% Similarity=0.413 Sum_probs=79.0
Q ss_pred ccccccCHHHHHHHHHcCCCCHHHHHHHHHHHHHhhCCCcceEEeeChhHHHHHHHHHHHHHHcCCccccccCCCCCccc
Q psy2056 123 NQLLLNSAQKTALLIRTKQVSCVKVVEAFITRIRQVNPMLNAVVDERFNLALEEAKQVDILLAASTKSVEEIGRDTPLLG 202 (220)
Q Consensus 123 ~~Ll~lSateLa~~IRsgelTs~EVVeAyIeRIeevNp~LNA~V~~rfE~AL~eAr~lD~r~a~g~~~~~~l~~~gPLlG 202 (220)
+++...|+.++++.+++|++|++|+++++++||++.|+.+|||++.++|+|+++|++.|++++.|. .|||+|
T Consensus 7 ~~~~~~s~~~l~~~~~~g~~t~~ev~~~~l~ri~~~~~~lna~~~~~~e~al~~A~~~d~~~~~g~--------~gpL~G 78 (490)
T PRK06170 7 DEWSFLPATELAAALAAGEVSSVELTDLAIARIERHDGKINAIVVRDFDRARAAARAADAARARGE--------RGPLLG 78 (490)
T ss_pred chhhhcCHHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCCcCEEEECCHHHHHHHHHHHHHHHhcCC--------CCCcCC
Confidence 456778999999999999999999999999999999999999999999999999999999887763 489999
Q ss_pred ceeeeeecccccC
Q psy2056 203 VPLTVKESVAVKV 215 (220)
Q Consensus 203 VPftIKDnIdVk~ 215 (220)
|||+|||+|+|+.
T Consensus 79 vPv~VKD~~~v~G 91 (490)
T PRK06170 79 IPVTVKESFNVAG 91 (490)
T ss_pred ceEEEecccccCC
Confidence 9999999999984
No 7
>PRK07486 amidase; Provisional
Probab=99.62 E-value=1.8e-15 Score=143.60 Aligned_cols=87 Identities=34% Similarity=0.447 Sum_probs=78.4
Q ss_pred cccccccCHHHHHHHHHcCCCCHHHHHHHHHHHHHhhCCCcceEEeeCh-hHHHHHHHHHHHHHHcCCccccccCCCCCc
Q psy2056 122 TNQLLLNSAQKTALLIRTKQVSCVKVVEAFITRIRQVNPMLNAVVDERF-NLALEEAKQVDILLAASTKSVEEIGRDTPL 200 (220)
Q Consensus 122 ~~~Ll~lSateLa~~IRsgelTs~EVVeAyIeRIeevNp~LNA~V~~rf-E~AL~eAr~lD~r~a~g~~~~~~l~~~gPL 200 (220)
.+++..+++.++++.+++|++|++|++++|++||++.|+.+|||++.+. ++|+++|+++|+++++|.. .|||
T Consensus 6 ~~~~~~~~~~~l~~~~~~g~~t~~ev~~~~l~ri~~~~~~~na~~~~~~~~~al~~A~~~d~~~~~g~~-------~gpL 78 (484)
T PRK07486 6 PDPIVRLSAHALSRAIRRRQVSCVEVMRAYLAHIERVNPAVNAIVALRDRDALLAEAAEKDAALARGEY-------RGWL 78 (484)
T ss_pred hhhhhhCCHHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCCCceEEEeCccHHHHHHHHHHHHHHhcCCC-------CCCc
Confidence 3456778999999999999999999999999999999999999999976 4569999999998888753 6899
Q ss_pred ccceeeeeecccccC
Q psy2056 201 LGVPLTVKESVAVKV 215 (220)
Q Consensus 201 lGVPftIKDnIdVk~ 215 (220)
+||||+|||||+++.
T Consensus 79 ~GvPi~vKD~~~v~G 93 (484)
T PRK07486 79 HGMPQAPKDLAPTKG 93 (484)
T ss_pred CCCeEEEecccccCC
Confidence 999999999999983
No 8
>PRK08137 amidase; Provisional
Probab=99.61 E-value=2.1e-15 Score=143.50 Aligned_cols=87 Identities=24% Similarity=0.390 Sum_probs=77.5
Q ss_pred cccccCHHHHHHHHHcCCCCHHHHHHHHHHHHHhh---CCCcceEEeeChhHHHHHHHHHHHHHHcCCccccccCCCCCc
Q psy2056 124 QLLLNSAQKTALLIRTKQVSCVKVVEAFITRIRQV---NPMLNAVVDERFNLALEEAKQVDILLAASTKSVEEIGRDTPL 200 (220)
Q Consensus 124 ~Ll~lSateLa~~IRsgelTs~EVVeAyIeRIeev---Np~LNA~V~~rfE~AL~eAr~lD~r~a~g~~~~~~l~~~gPL 200 (220)
+.+.+++.++++.+++|++|++|++++|++||++. ||.+||+++.+.+ |+++|++.|++++.|.. .|||
T Consensus 2 ~~~~~~~~~l~~~l~~g~~t~~ev~~~~l~ri~~~~~~~~~lna~~~~~~~-al~~A~~~d~~~~~g~~-------~gpL 73 (497)
T PRK08137 2 TALEERAGALQAAMPAGAAPASQLTRAYLQRIARIDRDGPRLNAVIELNPD-AEADAAALDAERKAGKV-------RGPL 73 (497)
T ss_pred chhhCCHHHHHHHHHcCCCCHHHHHHHHHHHHHHhcCCCCceeEEEEeCHH-HHHHHHHHHHHHhcCCC-------CCCc
Confidence 45678999999999999999999999999999987 6789999999875 99999999998877753 6899
Q ss_pred ccceeeeeecccccCCCC
Q psy2056 201 LGVPLTVKESVAVKVPAP 218 (220)
Q Consensus 201 lGVPftIKDnIdVk~~~~ 218 (220)
+||||+|||||+|++++|
T Consensus 74 ~GvPi~vKD~~~v~~G~~ 91 (497)
T PRK08137 74 HGIPVLLKDNIDAADPMP 91 (497)
T ss_pred CCceeeeecceeecCCCC
Confidence 999999999999994444
No 9
>PRK07056 amidase; Provisional
Probab=99.59 E-value=5e-15 Score=139.73 Aligned_cols=80 Identities=24% Similarity=0.255 Sum_probs=74.7
Q ss_pred CHHHHHHHHHcCCCCHHHHHHHHHHHHHhhCC-CcceEEeeChhHHHHHHHHHHHHHHcCCccccccCCCCCcccceeee
Q psy2056 129 SAQKTALLIRTKQVSCVKVVEAFITRIRQVNP-MLNAVVDERFNLALEEAKQVDILLAASTKSVEEIGRDTPLLGVPLTV 207 (220)
Q Consensus 129 SateLa~~IRsgelTs~EVVeAyIeRIeevNp-~LNA~V~~rfE~AL~eAr~lD~r~a~g~~~~~~l~~~gPLlGVPftI 207 (220)
++.++++++++|++|++|++++|++||++.|+ .+||+++.++|+|+++|+++|++.+.|.. .|||+||||+|
T Consensus 7 ~~~~l~~~~~~g~~s~~ev~~~~l~ri~~~~~~~lna~~~~~~~~al~~A~~~d~~~~~g~~-------~gpL~GvPi~v 79 (454)
T PRK07056 7 TLAALAADLAAGRTTSRALVEAALARIADPAGEGARVFTHVDADAARAAADAADALRAAGAA-------PSPLAGIPVSV 79 (454)
T ss_pred CHHHHHHHHHcCCCCHHHHHHHHHHHHHhhCCCCccEEEEeCHHHHHHHHHHHHHHHhCCCC-------CCCcCCCeEEE
Confidence 89999999999999999999999999999997 59999999999999999999998877753 68999999999
Q ss_pred eecccccC
Q psy2056 208 KESVAVKV 215 (220)
Q Consensus 208 KDnIdVk~ 215 (220)
||+|+++.
T Consensus 80 KD~~~v~G 87 (454)
T PRK07056 80 KDLFDVAG 87 (454)
T ss_pred EeeeccCC
Confidence 99999984
No 10
>PRK06102 hypothetical protein; Provisional
Probab=99.59 E-value=5.8e-15 Score=139.19 Aligned_cols=82 Identities=22% Similarity=0.182 Sum_probs=75.5
Q ss_pred cccCHHHHHHHHHcCCCCHHHHHHHHHHHHHhhCCCcceEEeeChhHHHHHHHHHHHHHHcCCccccccCCCCCccccee
Q psy2056 126 LLNSAQKTALLIRTKQVSCVKVVEAFITRIRQVNPMLNAVVDERFNLALEEAKQVDILLAASTKSVEEIGRDTPLLGVPL 205 (220)
Q Consensus 126 l~lSateLa~~IRsgelTs~EVVeAyIeRIeevNp~LNA~V~~rfE~AL~eAr~lD~r~a~g~~~~~~l~~~gPLlGVPf 205 (220)
..+++.++++++++|++|++|+++++++||++.|+ +|||+...+|+|+++|++.|++++.|.. .|||+||||
T Consensus 4 ~~~~~~~l~~~l~~g~~s~~ev~~~~l~ri~~~~~-~na~~~~~~~~al~~A~~~d~~~~~g~~-------~gpL~GvPi 75 (452)
T PRK06102 4 GAKSAAQLAVLIQSGALDPVQVAEQALDAIASYAD-QAVFISLTEERAMREAEASSARWRAGRS-------LGLLDGIPI 75 (452)
T ss_pred cccCHHHHHHHHHcCCCCHHHHHHHHHHHHHhhCC-CCEEEEeCHHHHHHHHHHHHHHHHCCCC-------CCCcCCCeE
Confidence 45689999999999999999999999999999886 8999999999999999999998877753 689999999
Q ss_pred eeeecccccC
Q psy2056 206 TVKESVAVKV 215 (220)
Q Consensus 206 tIKDnIdVk~ 215 (220)
+|||||+|+.
T Consensus 76 ~vKD~~~v~G 85 (452)
T PRK06102 76 AWKDLFDVAG 85 (452)
T ss_pred EEEeccccCC
Confidence 9999999983
No 11
>PRK06061 amidase; Provisional
Probab=99.59 E-value=6e-15 Score=140.28 Aligned_cols=84 Identities=35% Similarity=0.400 Sum_probs=77.3
Q ss_pred cccccCHHHHHHHHHcCCCCHHHHHHHHHHHHHhhCCCcceEEeeChhHHHHHHHHHHHHHHcCCccccccCCCCCcccc
Q psy2056 124 QLLLNSAQKTALLIRTKQVSCVKVVEAFITRIRQVNPMLNAVVDERFNLALEEAKQVDILLAASTKSVEEIGRDTPLLGV 203 (220)
Q Consensus 124 ~Ll~lSateLa~~IRsgelTs~EVVeAyIeRIeevNp~LNA~V~~rfE~AL~eAr~lD~r~a~g~~~~~~l~~~gPLlGV 203 (220)
.....++.++++.+++|++|++|+++++++||++.|+.+||+++.++|+|+++|+++|++++.+. .+||+||
T Consensus 14 ~~~~~s~~~l~~~l~~g~~s~~el~~~~l~ri~~~~~~lna~~~~~~~~al~~A~~~d~~~~~g~--------~~pL~Gv 85 (483)
T PRK06061 14 NDRLPGLTDQAYQLASGAVTSVELVRRSLRRIEASQPTLNAFRVVRAEAALAEAAEADRRRAAGD--------RLPLLGV 85 (483)
T ss_pred CcccCCHHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCcCCEEEEeChHHHHHHHHHHHHHHhcCC--------CCCcCCC
Confidence 34567899999999999999999999999999999999999999999999999999999888774 2599999
Q ss_pred eeeeeecccccC
Q psy2056 204 PLTVKESVAVKV 215 (220)
Q Consensus 204 PftIKDnIdVk~ 215 (220)
||+|||||+|+.
T Consensus 86 Pv~vKD~~~v~G 97 (483)
T PRK06061 86 PIAVKDDVDVAG 97 (483)
T ss_pred eEEEEcccccCC
Confidence 999999999984
No 12
>PRK12470 amidase; Provisional
Probab=99.58 E-value=5.7e-15 Score=139.73 Aligned_cols=83 Identities=28% Similarity=0.418 Sum_probs=77.0
Q ss_pred ccccCHHHHHHHHHcCCCCHHHHHHHHHHHHHhhCCCcceEEeeChhHHHHHHHHHHHHHHcCCccccccCCCCCcccce
Q psy2056 125 LLLNSAQKTALLIRTKQVSCVKVVEAFITRIRQVNPMLNAVVDERFNLALEEAKQVDILLAASTKSVEEIGRDTPLLGVP 204 (220)
Q Consensus 125 Ll~lSateLa~~IRsgelTs~EVVeAyIeRIeevNp~LNA~V~~rfE~AL~eAr~lD~r~a~g~~~~~~l~~~gPLlGVP 204 (220)
+...|+.++++.+++|++|++|+++++++||++.|+.+|||+..++|+|+++|++.|++++.|.. . ||+|||
T Consensus 6 ~~~~s~~~l~~~~~~g~~s~~e~~~~~l~ri~~~~~~lna~~~~~~~~a~~~A~~~d~~~~~g~~-------~-pL~GvP 77 (462)
T PRK12470 6 LAFAGAAAQARMLADGELTAPMLLEVYLQRIERLDSHLRAYRVVLFDRARAEAEAAQQRLDAGER-------L-PLLGVP 77 (462)
T ss_pred hhhCCHHHHHHHHHcCCCCHHHHHHHHHHHHHHHCCCcCEEEEeCHHHHHHHHHHhHHHHhcCCC-------C-CcCCCe
Confidence 45679999999999999999999999999999999999999999999999999999998887752 4 999999
Q ss_pred eeeeecccccC
Q psy2056 205 LTVKESVAVKV 215 (220)
Q Consensus 205 ftIKDnIdVk~ 215 (220)
|+|||||+++.
T Consensus 78 i~vKD~~~v~G 88 (462)
T PRK12470 78 IAIKDDVDVAG 88 (462)
T ss_pred EEEecCcccCC
Confidence 99999999984
No 13
>KOG1212|consensus
Probab=99.57 E-value=9.4e-15 Score=142.12 Aligned_cols=123 Identities=31% Similarity=0.326 Sum_probs=98.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhccCC---C-CCc---ccccccccCHHHHHHHHHcCCCCHHHHHHHHHHHHHh
Q psy2056 85 TLIKYLMWFGVRLLLILIWPLTRIRSLSYRHK---P-LPP---ITNQLLLNSAQKTALLIRTKQVSCVKVVEAFITRIRQ 157 (220)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~-~Pp---i~~~Ll~lSateLa~~IRsgelTs~EVVeAyIeRIee 157 (220)
..++++.+....+....+..+.+.+.+..... + .|. ..+.++.+++++|++++++|++||+|++++|+.|+.+
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ld~~~~~il~~~~~~L~~~L~~~e~~~~~vl~Ay~~Ra~~ 84 (560)
T KOG1212|consen 5 FVMKFLLRQLALIEDAENRLIKFRLLLSLRVKKAKSTAPKLDTTRNAILKLDATELAQALQSGELTSVEVLCAYCHRAIE 84 (560)
T ss_pred hHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhcccCcccchHHHHHhhcCHHHHHHHHHhCcCcHHHHHHHHHHHHHH
Confidence 46677777777777777776665554421111 1 333 3468999999999999999999999999999999999
Q ss_pred hCCCcceEEeeChhHHHHHHHHHHHHHHcCCccccccCCCCCcccceeeeeeccccc
Q psy2056 158 VNPMLNAVVDERFNLALEEAKQVDILLAASTKSVEEIGRDTPLLGVPLTVKESVAVK 214 (220)
Q Consensus 158 vNp~LNA~V~~rfE~AL~eAr~lD~r~a~g~~~~~~l~~~gPLlGVPftIKDnIdVk 214 (220)
+|+.+||+++..+|+++++|+..|+..+.+ ...+||+||||++||+|.++
T Consensus 85 vn~~lNcV~~~i~e~~~~~a~~~d~~~~~~-------~~k~PL~GvP~SvKe~~~vk 134 (560)
T KOG1212|consen 85 VNQKLNCVVEFIFEAALQAAALDDEYTAPL-------YEKPPLYGVPFSVKESISVK 134 (560)
T ss_pred hccCcceeeeehhhHHHHHhhchhhhhchh-------cccCCceecceehhhheeec
Confidence 999999999999999999998888765533 23689999999999999988
No 14
>PRK07869 amidase; Provisional
Probab=99.54 E-value=1.1e-14 Score=137.49 Aligned_cols=80 Identities=36% Similarity=0.371 Sum_probs=72.2
Q ss_pred ccccccCHHHHHHHHHcCCCCHHHHHHHHHHHHHhhCCCcceEEeeChhHHHHHHHHHHHHHHcCCccccccCCCCCccc
Q psy2056 123 NQLLLNSAQKTALLIRTKQVSCVKVVEAFITRIRQVNPMLNAVVDERFNLALEEAKQVDILLAASTKSVEEIGRDTPLLG 202 (220)
Q Consensus 123 ~~Ll~lSateLa~~IRsgelTs~EVVeAyIeRIeevNp~LNA~V~~rfE~AL~eAr~lD~r~a~g~~~~~~l~~~gPLlG 202 (220)
+++..+++.++++++++|++|++|+++++++||++.|+.+|||++.++|+|+++|++.| + ..|||+|
T Consensus 10 ~~~~~~~~~~l~~~~~~g~~s~~el~~~~l~ri~~~~~~lna~~~~~~e~a~~~A~~~d-----~--------~~gpL~G 76 (468)
T PRK07869 10 DALGDLDAVGLAEAIRAGRVSAAEVVEAAIARAEAVNPALNALAYAAFDRARDRAARPG-----S--------QGGFFSG 76 (468)
T ss_pred hhhhcCCHHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCCcCEEEEcCHHHHHHHHHhcC-----C--------CCCCcCC
Confidence 34566799999999999999999999999999999999999999999999999998765 1 2589999
Q ss_pred ceeeeeecccccC
Q psy2056 203 VPLTVKESVAVKV 215 (220)
Q Consensus 203 VPftIKDnIdVk~ 215 (220)
|||+|||||+++.
T Consensus 77 vPi~vKD~~~v~G 89 (468)
T PRK07869 77 VPTFIKDNVDVAG 89 (468)
T ss_pred CeEEEecCcccCC
Confidence 9999999999983
No 15
>PRK06828 amidase; Provisional
Probab=99.54 E-value=2.3e-14 Score=137.27 Aligned_cols=81 Identities=16% Similarity=0.287 Sum_probs=73.9
Q ss_pred ccCHHHHHHHHHcCCCCHHHHHHHHHHHHHhhC---CCcceEEeeChhHHHHHHHHHHHHHHcCCccccccCCCCCcccc
Q psy2056 127 LNSAQKTALLIRTKQVSCVKVVEAFITRIRQVN---PMLNAVVDERFNLALEEAKQVDILLAASTKSVEEIGRDTPLLGV 203 (220)
Q Consensus 127 ~lSateLa~~IRsgelTs~EVVeAyIeRIeevN---p~LNA~V~~rfE~AL~eAr~lD~r~a~g~~~~~~l~~~gPLlGV 203 (220)
..++.++++++++|++||+|++++|++||++.| +.+|||+..+.+ |+++|++.|++++.|.. .|||+||
T Consensus 12 ~~~~~~l~~~l~~g~~t~~el~~~~l~ri~~~~~~~~~lna~~~~~~~-al~~A~~~d~~~~~g~~-------~gpL~Gv 83 (491)
T PRK06828 12 ELTIHDIQTAMEDGKLTSKELVMYYLHRIAKYDQDGPKINSILEINPD-AIFIAEALDHERKIKGV-------RGPLHGI 83 (491)
T ss_pred cCCHHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCCCCeeEEEEecCHH-HHHHHHHHHHHHhcCCC-------CCCccCc
Confidence 358999999999999999999999999999998 589999999887 89999999988877752 6899999
Q ss_pred eeeeeecccccC
Q psy2056 204 PLTVKESVAVKV 215 (220)
Q Consensus 204 PftIKDnIdVk~ 215 (220)
||+|||||+|+.
T Consensus 84 Pv~vKD~~~v~g 95 (491)
T PRK06828 84 PVLLKDNIETND 95 (491)
T ss_pred eeeeeeeEEecC
Confidence 999999999995
No 16
>PRK07488 indole acetimide hydrolase; Validated
Probab=99.54 E-value=2.4e-14 Score=135.55 Aligned_cols=84 Identities=27% Similarity=0.381 Sum_probs=75.9
Q ss_pred ccccccCHHHHHHHHHcCCCCHHHHHHHHHHHHHhhCCCcceEEeeChhHHHHHHHHHHHHHHcCCccccccCCCCCccc
Q psy2056 123 NQLLLNSAQKTALLIRTKQVSCVKVVEAFITRIRQVNPMLNAVVDERFNLALEEAKQVDILLAASTKSVEEIGRDTPLLG 202 (220)
Q Consensus 123 ~~Ll~lSateLa~~IRsgelTs~EVVeAyIeRIeevNp~LNA~V~~rfE~AL~eAr~lD~r~a~g~~~~~~l~~~gPLlG 202 (220)
+++..+++.++++.+++|++|++|++++|++||++.+ .+|||++.++|+|+++|++.|++++.|.. .+ |+|
T Consensus 6 ~~~~~~~~~~l~~~l~~g~~s~~ev~~~~l~ri~~~~-~lna~~~~~~~~al~~A~~~d~~~~~g~~-------~g-L~G 76 (472)
T PRK07488 6 PDVASLSLTEAAAALRSGRLSCLELVEALLARAAALA-PLNAFTTVDAEGALAAARRIDAQRAAGAA-------LL-LAG 76 (472)
T ss_pred hhhhhCCHHHHHHHHHcCCCCHHHHHHHHHHHHHHhC-cCCEEEEcCHHHHHHHHHHHHHHHhcCCC-------CC-cCc
Confidence 4467789999999999999999999999999999976 59999999999999999999998877642 45 999
Q ss_pred ceeeeeecccccC
Q psy2056 203 VPLTVKESVAVKV 215 (220)
Q Consensus 203 VPftIKDnIdVk~ 215 (220)
|||+|||||+|+.
T Consensus 77 vPi~vKD~~~v~G 89 (472)
T PRK07488 77 VPIVIKDNINTAG 89 (472)
T ss_pred eEEEEEcccccCC
Confidence 9999999999984
No 17
>PRK06707 amidase; Provisional
Probab=99.51 E-value=5.7e-14 Score=136.11 Aligned_cols=85 Identities=24% Similarity=0.390 Sum_probs=74.7
Q ss_pred ccccCHHHHHHHHHcCCCCHHHHHHHHHHHHHhhC---CCcceEEeeChhHHHHHHHHHHHHHHcCCccccccCCCCCcc
Q psy2056 125 LLLNSAQKTALLIRTKQVSCVKVVEAFITRIRQVN---PMLNAVVDERFNLALEEAKQVDILLAASTKSVEEIGRDTPLL 201 (220)
Q Consensus 125 Ll~lSateLa~~IRsgelTs~EVVeAyIeRIeevN---p~LNA~V~~rfE~AL~eAr~lD~r~a~g~~~~~~l~~~gPLl 201 (220)
+...++.++++.+++|++|++|++++|++||++.| +.+||+++.+.+ |+++|++.|++++.+. .+||+
T Consensus 68 i~~~~i~~l~~~~~~g~lt~~el~~~~l~ri~~~~~~~~~lna~~~~~~~-al~~A~~~d~~~~~~~--------~~pL~ 138 (536)
T PRK06707 68 VVNATVDELQKMIDDGKLSYEELTSIYLFRIQEHDQNGITLNSVTEINPN-AMEEARKLDQERSRNK--------KSNLY 138 (536)
T ss_pred hhhCCHHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCCCCceEEEEECCHH-HHHHHHHHHHHHhcCC--------CCCcC
Confidence 44578999999999999999999999999999998 479999999875 9999999998876663 48999
Q ss_pred cceeeeeecccccCCCC
Q psy2056 202 GVPLTVKESVAVKVPAP 218 (220)
Q Consensus 202 GVPftIKDnIdVk~~~~ 218 (220)
||||+|||||+++.++|
T Consensus 139 GiPi~vKD~i~~~~g~~ 155 (536)
T PRK06707 139 GIPVVVKDNVQTAKVMP 155 (536)
T ss_pred CCeEEEecccccCCCCc
Confidence 99999999999954454
No 18
>PRK06565 amidase; Validated
Probab=99.50 E-value=6.3e-14 Score=136.88 Aligned_cols=84 Identities=31% Similarity=0.370 Sum_probs=75.6
Q ss_pred cccccCHHHHHHHHHcCCCCHHHHHHHHHHHHHhhC-----CCcceEEeeChhHHHHHHHHHHHHHHcCCccccccCCCC
Q psy2056 124 QLLLNSAQKTALLIRTKQVSCVKVVEAFITRIRQVN-----PMLNAVVDERFNLALEEAKQVDILLAASTKSVEEIGRDT 198 (220)
Q Consensus 124 ~Ll~lSateLa~~IRsgelTs~EVVeAyIeRIeevN-----p~LNA~V~~rfE~AL~eAr~lD~r~a~g~~~~~~l~~~g 198 (220)
.+...++.++++++++|++|++|++++|++||++.| +.+||++..+.+ |+++|++.|++++.|.. .+
T Consensus 3 ~i~~~si~~L~~~l~~g~~t~~elv~a~l~ri~~~~~~~~~~~lna~~~~~~~-Al~~A~~~D~~~~~g~~-------~g 74 (566)
T PRK06565 3 EVTEVSIAELRAALESGRTTAVELVKAYLARIDAYDGPATGTALNAVVVRNPD-ALKEAEASDARRARGET-------LG 74 (566)
T ss_pred ccccCCHHHHHHHHHcCCCCHHHHHHHHHHHHHHhCccccCcceEEEEecCHH-HHHHHHHHHHHHhcCCC-------CC
Confidence 356779999999999999999999999999999999 689999987765 99999999998877752 58
Q ss_pred CcccceeeeeecccccC
Q psy2056 199 PLLGVPLTVKESVAVKV 215 (220)
Q Consensus 199 PLlGVPftIKDnIdVk~ 215 (220)
||+||||+|||||+++.
T Consensus 75 pL~GIPi~vKD~~~v~G 91 (566)
T PRK06565 75 PLDGIPYTAKDSYLVKG 91 (566)
T ss_pred CCCCCEEEEecccccCC
Confidence 99999999999999984
No 19
>COG0154 GatA Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit and related amidases [Translation, ribosomal structure and biogenesis]
Probab=99.48 E-value=1e-13 Score=132.67 Aligned_cols=85 Identities=40% Similarity=0.514 Sum_probs=77.7
Q ss_pred cccccCHHHHHHHHHcCCCCHHHHHHHHHHHHHhhCCCcceEEeeChhHHHH--HHHHHHHHHHcCCccccccCCCCCcc
Q psy2056 124 QLLLNSAQKTALLIRTKQVSCVKVVEAFITRIRQVNPMLNAVVDERFNLALE--EAKQVDILLAASTKSVEEIGRDTPLL 201 (220)
Q Consensus 124 ~Ll~lSateLa~~IRsgelTs~EVVeAyIeRIeevNp~LNA~V~~rfE~AL~--eAr~lD~r~a~g~~~~~~l~~~gPLl 201 (220)
.+...++.++++.++++++|++|+++++++||++.|+.+||++..+.|.|+. +|++.|++.++|. ..|||+
T Consensus 3 ~~~~~~~~~l~~~~~~~~~s~~e~~~~~l~ri~~~~~~~na~~~~~~e~a~~~~~A~~~d~~~~~g~-------~~gpL~ 75 (475)
T COG0154 3 ALTELTAAELAALLRAKELSAVELVEAYLARIEALNPDLNAFVAVDPEAALALAEAAAADARLAAGE-------PLGPLA 75 (475)
T ss_pred chhhhhHHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCCCCEEEEeChhhcchHHHHHHHHHHHhcCC-------CCCCcC
Confidence 3556789999999999999999999999999999999999999999998865 9999999998884 269999
Q ss_pred cceeeeeecccccC
Q psy2056 202 GVPLTVKESVAVKV 215 (220)
Q Consensus 202 GVPftIKDnIdVk~ 215 (220)
|||++|||||+|+.
T Consensus 76 GvPiavKDn~~~~G 89 (475)
T COG0154 76 GVPIAVKDNIDTAG 89 (475)
T ss_pred CceEEEeeccccCC
Confidence 99999999999984
No 20
>PRK06529 amidase; Provisional
Probab=99.48 E-value=8.7e-14 Score=132.08 Aligned_cols=76 Identities=37% Similarity=0.534 Sum_probs=69.4
Q ss_pred ccCHHHHHHHHHcCCCCHHHHHHHHHHHHHhhCCCcceEEeeChhHHHHHHHHHHHHHHcCCccccccCCCCCcccceee
Q psy2056 127 LNSAQKTALLIRTKQVSCVKVVEAFITRIRQVNPMLNAVVDERFNLALEEAKQVDILLAASTKSVEEIGRDTPLLGVPLT 206 (220)
Q Consensus 127 ~lSateLa~~IRsgelTs~EVVeAyIeRIeevNp~LNA~V~~rfE~AL~eAr~lD~r~a~g~~~~~~l~~~gPLlGVPft 206 (220)
.+++.++++.+++|++|+.|+++++++||++.|+.+|||++.++|+|+++|++.|+. .+||+||||+
T Consensus 3 ~~~~~~l~~~~~~g~~s~~e~~~~~l~ri~~~~~~lna~~~~~~e~al~~A~~~d~~-------------~~PL~GvPi~ 69 (482)
T PRK06529 3 YKDATAMAQAVQQGQVTPLELVTQAIYKAKKLNPTLNAIVSERYEEALEEAKQRDFS-------------GKPFAGVPIF 69 (482)
T ss_pred cCCHHHHHHHHHcCCCCHHHHHHHHHHHHHHHCCcccEEEecChHHHHHHHHhcccc-------------CCCcCCCeEE
Confidence 468999999999999999999999999999999999999999999999999988731 2599999999
Q ss_pred eeec-ccccC
Q psy2056 207 VKES-VAVKV 215 (220)
Q Consensus 207 IKDn-IdVk~ 215 (220)
|||| ++|+.
T Consensus 70 vKD~~~~v~G 79 (482)
T PRK06529 70 LKDLGQELKG 79 (482)
T ss_pred EecCCcccCC
Confidence 9998 79983
No 21
>PRK11910 amidase; Provisional
Probab=99.47 E-value=1.3e-13 Score=135.73 Aligned_cols=82 Identities=26% Similarity=0.400 Sum_probs=73.2
Q ss_pred cccccCHHHHHHHHHcCCCCHHHHHHHHHHHHHhhCC---CcceEEeeChhHHHHHHHHHHHHHHcCCccccccCCCCCc
Q psy2056 124 QLLLNSAQKTALLIRTKQVSCVKVVEAFITRIRQVNP---MLNAVVDERFNLALEEAKQVDILLAASTKSVEEIGRDTPL 200 (220)
Q Consensus 124 ~Ll~lSateLa~~IRsgelTs~EVVeAyIeRIeevNp---~LNA~V~~rfE~AL~eAr~lD~r~a~g~~~~~~l~~~gPL 200 (220)
.+...++.++++.+++|++|++|++++|++||++.|+ .+|||++.+++ |+++|+++|+.++.+ .|||
T Consensus 161 ~i~~~ti~~L~~~l~~g~lT~~elv~a~L~RI~~~n~~g~~LnA~i~~~~~-Al~~A~~lD~~~~~~---------~gPL 230 (615)
T PRK11910 161 LIIGADVTKLQQLIATKQLSYKELAGIYLNRIKKYDQNGLNLNAITEINPT-IIAEAEQLDKENTTN---------KSAL 230 (615)
T ss_pred cchhCCHHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCCCCceeEEEEcCHH-HHHHHHHHHHHhccC---------CCCc
Confidence 3466789999999999999999999999999999997 79999999985 899999999865433 4899
Q ss_pred ccceeeeeecccccC
Q psy2056 201 LGVPLTVKESVAVKV 215 (220)
Q Consensus 201 lGVPftIKDnIdVk~ 215 (220)
+||||+|||||+++.
T Consensus 231 ~GIPv~VKDni~t~G 245 (615)
T PRK11910 231 YGMPVLLKDNIGTKE 245 (615)
T ss_pred CCCEEEEEcCcccCC
Confidence 999999999999983
No 22
>TIGR00132 gatA glutamyl-tRNA(Gln) and/or aspartyl-tRNA(Asn) amidotransferase, A subunit. This orthology group is more narrowly defined here than in Proc Natl Acad Aci USA 94, 11819-11826 (1997). In particular, a Rhodococcus homolog found in association with nitrile hydratase genes and described as an enantiomer-selective amidase active on several 2-aryl propionamides, is excluded here. It is likely, however, that the amidase subunit GatA is not exclusively a part of the Glu-tRNA(Gln) amidotransferase heterotrimer and restricted to that function in all species.
Probab=99.46 E-value=9.7e-14 Score=130.76 Aligned_cols=71 Identities=32% Similarity=0.508 Sum_probs=65.4
Q ss_pred HHHHHHcCCCCHHHHHHHHHHHHHhhCCCcceEEeeChhHHHHHHHHHHHHHHcCCccccccCCCCCcccceeeeeeccc
Q psy2056 133 TALLIRTKQVSCVKVVEAFITRIRQVNPMLNAVVDERFNLALEEAKQVDILLAASTKSVEEIGRDTPLLGVPLTVKESVA 212 (220)
Q Consensus 133 La~~IRsgelTs~EVVeAyIeRIeevNp~LNA~V~~rfE~AL~eAr~lD~r~a~g~~~~~~l~~~gPLlGVPftIKDnId 212 (220)
|++++++|++|++|++++|++||++.|+.+|||++.+.|+|+++|++.|+++ .|||+||||+|||||+
T Consensus 1 l~~~~~~g~~s~~ev~~~~l~ri~~~~~~~na~~~~~~~~al~~A~~~d~~~------------~gpL~GvPv~vKD~~~ 68 (460)
T TIGR00132 1 LRQLLKKKEISIKEVLEASLDRIEANKDKINAFLEVTVEKALKQAKKLDKAI------------LTPLAGIPIAVKDNIS 68 (460)
T ss_pred ChhHHhcCCCCHHHHHHHHHHHHHHhcccCCeEEEcCHHHHHHHHHHHHHhc------------cCCcCCcEEEEecccc
Confidence 4678999999999999999999999999999999999999999999999652 1799999999999999
Q ss_pred ccC
Q psy2056 213 VKV 215 (220)
Q Consensus 213 Vk~ 215 (220)
|+.
T Consensus 69 v~G 71 (460)
T TIGR00132 69 TKG 71 (460)
T ss_pred cCC
Confidence 984
No 23
>PRK00012 gatA aspartyl/glutamyl-tRNA amidotransferase subunit A; Reviewed
Probab=99.45 E-value=1.5e-13 Score=129.49 Aligned_cols=71 Identities=35% Similarity=0.615 Sum_probs=65.6
Q ss_pred HHcCCCCHHHHHHHHHHHHHhhCCCcceEEeeChhHHHHHHHHHHHHHHcCCccccccCCCCCcccceeeeeecccccC
Q psy2056 137 IRTKQVSCVKVVEAFITRIRQVNPMLNAVVDERFNLALEEAKQVDILLAASTKSVEEIGRDTPLLGVPLTVKESVAVKV 215 (220)
Q Consensus 137 IRsgelTs~EVVeAyIeRIeevNp~LNA~V~~rfE~AL~eAr~lD~r~a~g~~~~~~l~~~gPLlGVPftIKDnIdVk~ 215 (220)
+++|++|++|+++++++||++.|+.+||+++.++|+|+++|++.|+++++|. .+||+||||+|||||+|+.
T Consensus 1 i~~g~~t~~ev~~~~l~ri~~~~~~lna~~~~~~~~al~~A~~~d~~~~~g~--------~gpL~GvPv~vKD~~~v~G 71 (459)
T PRK00012 1 LKNKEISAVELTQAYLDRIEEVDPKLNAFITVTEEEALAQAKAADAKLAAGE--------AGPLAGIPIAIKDNICTKG 71 (459)
T ss_pred CCCCcCCHHHHHHHHHHHHHHhcccCCeEEEeCHHHHHHHHHHHHHHHhcCC--------CCccCCeEEEEecccccCC
Confidence 4689999999999999999999999999999999999999999998877653 4899999999999999984
No 24
>PF01425 Amidase: Amidase; InterPro: IPR000120 Amidase signature (AS) enzymes are a large group of hydrolytic enzymes that contain a conserved stretch of approximately 130 amino acids known as the AS sequence. They are widespread, being found in both prokaryotes and eukaryotes. AS enzymes catalyse the hydrolysis of amide bonds (CO-NH2), although the family has diverged widely with regard to substrate specificity and function. Nonetheless, these enzymes maintain a core alpha/beta/alpha structure, where the topologies of the N- and C-terminal halves are similar. AS enzymes characteristically have a highly conserved C-terminal region rich in serine and glycine residues, but devoid of aspartic acid and histidine residues, therefore they differ from classical serine hydrolases. These enzymes posses a unique, highly conserved Ser-Ser-Lys catalytic triad used for amide hydrolysis, although the catalytic mechanism for acyl-enzyme intermediate formation can differ between enzymes []. Examples of AS enzymes include: Peptide amidase (Pam) [], which catalyses the hydrolysis of the C-terminal amide bond of peptides. Fatty acid amide hydrolases [], which hydrolyse fatty acid amid substrates (e.g. cannabinoid anandamide and sleep-inducing oleamide), thereby controlling the level and duration of signalling induced by this diverse class of lipid transmitters. Malonamidase E2 [], which catalyses the hydrolysis of malonamate into malonate and ammonia, and which is involved in the transport of fixed nitrogen from bacteroids to plant cells in symbiotic nitrogen metabolism. Subunit A of Glu-tRNA(Gln) amidotransferase [],a heterotrimeric enzyme that catalyses the formation of Gln-tRNA(Gln) by the transamidation of misacylated Glu-tRNA(Gln) via amidolysis of glutamine. ; GO: 0016884 carbon-nitrogen ligase activity, with glutamine as amido-N-donor; PDB: 1OCL_B 1OBK_A 1OBL_B 1OBJ_A 1OCM_B 1OCH_A 1OCK_B 1OBI_A 1O9Q_A 1O9N_B ....
Probab=99.39 E-value=2.8e-13 Score=121.53 Aligned_cols=62 Identities=39% Similarity=0.659 Sum_probs=55.4
Q ss_pred HHHHHHHHHHHhhCCCcceEEeeChhHHHHHHHHHHHHHHcCCccccccCCCCCcccceeeeeeccccc
Q psy2056 146 KVVEAFITRIRQVNPMLNAVVDERFNLALEEAKQVDILLAASTKSVEEIGRDTPLLGVPLTVKESVAVK 214 (220)
Q Consensus 146 EVVeAyIeRIeevNp~LNA~V~~rfE~AL~eAr~lD~r~a~g~~~~~~l~~~gPLlGVPftIKDnIdVk 214 (220)
|++++|++||++.|+.+||+++..+++|+++|++.|++++.+.. .+||+||||+|||||+++
T Consensus 1 e~~~~~~~ri~~~~~~~na~~~~~~~~a~~~A~~~d~~~~~~~~-------~~pL~Gip~~vKD~~~~~ 62 (441)
T PF01425_consen 1 ELVEAYLARIEAYNPELNAFVEVDFDEALAQARELDARRARGKP-------RGPLHGIPISVKDNIDVA 62 (441)
T ss_dssp HHHHHHHHHHHHHHHHH--EEEEEHHHHHHHHHHHHHHHHTTSS-------SSTTTT-EEEEETTBSBT
T ss_pred CHHHHHHHHHHHhCcccCEEEEECcHHHHHHHHHHHHHHhhcCC-------CCCCCCCceecccccccc
Confidence 79999999999999999999999999999999999999886653 799999999999999998
No 25
>PRK08186 allophanate hydrolase; Provisional
Probab=99.38 E-value=1.2e-12 Score=128.46 Aligned_cols=78 Identities=22% Similarity=0.186 Sum_probs=69.7
Q ss_pred ccCHHHHHHHHHcCCCCHHHHHHHHHHHHHhhCCCcceEEeeCh-hHHHHHHHHHHHHHHcCCccccccCCCCCccccee
Q psy2056 127 LNSAQKTALLIRTKQVSCVKVVEAFITRIRQVNPMLNAVVDERF-NLALEEAKQVDILLAASTKSVEEIGRDTPLLGVPL 205 (220)
Q Consensus 127 ~lSateLa~~IRsgelTs~EVVeAyIeRIeevNp~LNA~V~~rf-E~AL~eAr~lD~r~a~g~~~~~~l~~~gPLlGVPf 205 (220)
.+++.++++.+++|++|++|+++++++||++ ++.+|+|+..+. ++|+++|+++|++.+ ..+||+||||
T Consensus 6 ~~t~~~l~~~~~~g~~t~~evv~a~l~ri~~-~~~~~a~i~~~~~~~a~~~A~~ld~~~~----------~~gPL~GVP~ 74 (600)
T PRK08186 6 DLTLASLRAAYRAGTLTPRAVVAALYARIAA-VDDPEVWIHLRPEADLLAQAAALEARDP----------AALPLYGVPF 74 (600)
T ss_pred cCCHHHHHHHHHcCCCCHHHHHHHHHHHHHh-cCCCCEEEEeCchHHHHHHHHHHhhhcc----------ccCCCCCCeE
Confidence 4589999999999999999999999999998 678999999987 579999999997643 1489999999
Q ss_pred eeeecccccC
Q psy2056 206 TVKESVAVKV 215 (220)
Q Consensus 206 tIKDnIdVk~ 215 (220)
+|||||||+.
T Consensus 75 aVKDnidvaG 84 (600)
T PRK08186 75 AVKDNIDVAG 84 (600)
T ss_pred EeecceecCC
Confidence 9999999983
No 26
>PRK05962 amidase; Validated
Probab=99.17 E-value=4.4e-11 Score=112.17 Aligned_cols=60 Identities=22% Similarity=0.115 Sum_probs=55.3
Q ss_pred HHHHHHHHhhCCCcceEEeeChhHHHHHHHHHHHHHHcCCccccccCCCCCcccceeeeeecccccC
Q psy2056 149 EAFITRIRQVNPMLNAVVDERFNLALEEAKQVDILLAASTKSVEEIGRDTPLLGVPLTVKESVAVKV 215 (220)
Q Consensus 149 eAyIeRIeevNp~LNA~V~~rfE~AL~eAr~lD~r~a~g~~~~~~l~~~gPLlGVPftIKDnIdVk~ 215 (220)
+++++||++.|+.+|||++.++|+|+++|++.|+++++|.. .|||+||||+|||||+|+.
T Consensus 2 ~~~l~ri~~~~~~lna~~~~~~~~al~~A~~~d~~~~~g~~-------~gpL~GvPi~vKD~~~v~G 61 (424)
T PRK05962 2 EATLARLAARAGEEHVFSKLYAERARAEADAADARRRAGRS-------LGPLDGRIVSIKDLFDVAG 61 (424)
T ss_pred HHHHHHHHhhCCcccEEEEECHHHHHHHHHHHHHHHHcCCC-------CCCCCCCEEEEEeeeecCC
Confidence 68999999999999999999999999999999998877753 6999999999999999983
No 27
>PRK07235 amidase; Provisional
Probab=98.89 E-value=1.4e-09 Score=104.58 Aligned_cols=84 Identities=14% Similarity=0.053 Sum_probs=73.6
Q ss_pred ccccccCHHHHHHHHHcCCCCHHHHHHHHHHHHHhhCCCcceEEeeChhHHHHHHHHHHHHHHcCCccccccCCCCCccc
Q psy2056 123 NQLLLNSAQKTALLIRTKQVSCVKVVEAFITRIRQVNPMLNAVVDERFNLALEEAKQVDILLAASTKSVEEIGRDTPLLG 202 (220)
Q Consensus 123 ~~Ll~lSateLa~~IRsgelTs~EVVeAyIeRIeevNp~LNA~V~~rfE~AL~eAr~lD~r~a~g~~~~~~l~~~gPLlG 202 (220)
.++...++.++.+.++ +++++.|++++..++++.+++..|++...+.|++...|...+.+ .+|. ..|||+|
T Consensus 20 ~~l~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~-~~g~-------~~gpL~G 90 (502)
T PRK07235 20 LDLTDEELASYLSLMQ-ASLDAYDRIDELPDEIPPVKYPRTPGYRPEAEENPYGAWYVKTS-IKGA-------AEGKLAG 90 (502)
T ss_pred CCCChhhHHHHHHHHH-hccCHHHHHHHHhhcccccCCCcccccccCcccChhcChhhhhc-cCCC-------CCCCcCC
Confidence 3456788999999999 99999999999999999999999999999999998888888766 3443 3689999
Q ss_pred ceeeeeecccccC
Q psy2056 203 VPLTVKESVAVKV 215 (220)
Q Consensus 203 VPftIKDnIdVk~ 215 (220)
|||+|||||+|+.
T Consensus 91 vPiavKD~i~v~G 103 (502)
T PRK07235 91 KTVALKDNVAVAG 103 (502)
T ss_pred ceEEEecccccCC
Confidence 9999999999983
No 28
>KOG1211|consensus
Probab=98.36 E-value=4.7e-07 Score=88.04 Aligned_cols=71 Identities=24% Similarity=0.438 Sum_probs=60.6
Q ss_pred HHcCCCCHHHHHHHHHHHHHhhCCCcceEEeeChhHHHHHHHHHHHHHHcCCccccccCCCCCcccceeeeeecccccC
Q psy2056 137 IRTKQVSCVKVVEAFITRIRQVNPMLNAVVDERFNLALEEAKQVDILLAASTKSVEEIGRDTPLLGVPLTVKESVAVKV 215 (220)
Q Consensus 137 IRsgelTs~EVVeAyIeRIeevNp~LNA~V~~rfE~AL~eAr~lD~r~a~g~~~~~~l~~~gPLlGVPftIKDnIdVk~ 215 (220)
+.+|.+++.+.++.+++++...++. |+++....++++.+|+.+|++.+.+. ..+||.|+|++|||||++++
T Consensus 27 l~~~~l~~~~~ie~~l~~~~~~~~~-~~~i~~~~~~~~~~a~~~~~~~~~~~-------~~~~L~Gv~i~IKDnf~tk~ 97 (506)
T KOG1211|consen 27 LSSGLLTSKRIIESYLERINKWKPL-NAKITVINEEALKQAEEVTRRRKNGM-------EKGPLQGVPIAIKDNFDTKD 97 (506)
T ss_pred hcccccchHHHHHHHHHHHhhcccc-cceeeeccHHHHHHhhhccccccCCC-------cCCCcCCceEEEeeceecCC
Confidence 7889999999999999999988765 55556666789999999998776654 36899999999999999984
No 29
>PF09301 DUF1970: Domain of unknown function (DUF1970); InterPro: IPR015380 This entry is represented by Bacteriophage PRD1, P16; it is a family of uncharacterised viral proteins.; PDB: 1W8X_P.
Probab=44.98 E-value=10 Score=29.85 Aligned_cols=22 Identities=55% Similarity=0.924 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHHHhhccccc
Q psy2056 28 KYLMWFGVRLLLILIWPLTRIR 49 (220)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~ 49 (220)
|.|.|.|--+.+||||---|-|
T Consensus 5 kllywvggglvliliwlwfrnr 26 (117)
T PF09301_consen 5 KLLYWVGGGLVLILIWLWFRNR 26 (117)
T ss_dssp SSHHHHHHHHHHHHHHHHHHHT
T ss_pred eeEeEecCchhhHHHHHHHccC
Confidence 5788999999999999765544
No 30
>PRK12333 nucleoside triphosphate pyrophosphohydrolase; Reviewed
Probab=27.53 E-value=1.2e+02 Score=26.85 Aligned_cols=25 Identities=8% Similarity=0.252 Sum_probs=22.5
Q ss_pred HcCCCCHHHHHHHHHHHHHhhCCCc
Q psy2056 138 RTKQVSCVKVVEAFITRIRQVNPML 162 (220)
Q Consensus 138 RsgelTs~EVVeAyIeRIeevNp~L 162 (220)
.+|..+-.||+++..++.-..+|++
T Consensus 71 e~g~F~~~DV~~~i~~KlirRHPHV 95 (204)
T PRK12333 71 EEGRFTYPDVERGIVEKLIRRHPHV 95 (204)
T ss_pred HcCCCCHHHHHHHHHHHhcccCCcc
Confidence 4689999999999999999999976
No 31
>TIGR00444 mazG MazG family protein. This family of prokaryotic proteins has no known function. It includes the uncharacterized protein MazG in E. coli.
Probab=23.60 E-value=2.5e+02 Score=25.36 Aligned_cols=36 Identities=11% Similarity=0.057 Sum_probs=26.0
Q ss_pred CHHHHHHHH-HcCCCCHHHHHHHHHHHHHhhCCCcce
Q psy2056 129 SAQKTALLI-RTKQVSCVKVVEAFITRIRQVNPMLNA 164 (220)
Q Consensus 129 SateLa~~I-RsgelTs~EVVeAyIeRIeevNp~LNA 164 (220)
++.-.++.. ..|.++++++++...++....+|++-.
T Consensus 56 qvv~~a~iar~~g~f~~edvl~~~~~K~irRhphVf~ 92 (248)
T TIGR00444 56 QVVFYAQMAQEEGYFDFDDVCAGISEKLVRRHPHVFA 92 (248)
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhchhhhh
Confidence 344444433 346699999999999999988887643
No 32
>PRK09562 mazG nucleoside triphosphate pyrophosphohydrolase; Reviewed
Probab=23.48 E-value=1.7e+02 Score=26.45 Aligned_cols=32 Identities=19% Similarity=0.205 Sum_probs=24.0
Q ss_pred HHHHHH-HcCCCCHHHHHHHHHHHHHhhCCCcc
Q psy2056 132 KTALLI-RTKQVSCVKVVEAFITRIRQVNPMLN 163 (220)
Q Consensus 132 eLa~~I-RsgelTs~EVVeAyIeRIeevNp~LN 163 (220)
-+++.. ..|.++++++++...++....+|++-
T Consensus 73 ~~a~~~~e~~~~d~e~vl~~~~~K~~~R~p~vf 105 (262)
T PRK09562 73 FHAQMAEEQGAFDFADVVEAISDKLIRRHPHVF 105 (262)
T ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHhhhchhhc
Confidence 344444 35679999999999999988888654
No 33
>PF15176 LRR19-TM: Leucine-rich repeat family 19 TM domain
Probab=22.43 E-value=1.1e+02 Score=24.39 Aligned_cols=18 Identities=39% Similarity=0.516 Sum_probs=14.1
Q ss_pred hcccccccccccCCCCcc
Q psy2056 44 PLTRIRSLSYRHKPLPPI 61 (220)
Q Consensus 44 ~~~~~~~~~~~~~~~~~~ 61 (220)
|+-+---+||||.|||--
T Consensus 41 ~~~~k~~~SY~H~rL~e~ 58 (102)
T PF15176_consen 41 PVWYKYLASYRHHRLPET 58 (102)
T ss_pred HHHHHHHhccccccCCcc
Confidence 555556689999999975
Done!