Query psy2056
Match_columns 220
No_of_seqs 229 out of 1176
Neff 4.7
Searched_HMMs 29240
Date Fri Aug 16 23:06:27 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy2056.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/2056hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ip4_A Glutamyl-tRNA(Gln) amid 99.7 2.6E-17 8.7E-22 154.8 8.4 84 124-215 2-86 (485)
2 2dc0_A Probable amidase; struc 99.7 8.4E-17 2.9E-21 149.6 10.0 80 128-215 1-80 (434)
3 1m22_A Peptide amidase, PAM; e 99.7 2.8E-16 9.6E-21 148.4 10.8 84 124-215 7-93 (503)
4 3h0l_A Glutamyl-tRNA(Gln) amid 99.6 8.2E-16 2.8E-20 144.8 4.6 78 125-215 2-79 (478)
5 3a2q_A 6-aminohexanoate-cyclic 99.5 1.7E-14 5.9E-19 135.7 6.3 75 124-215 5-80 (493)
6 3kfu_E Glutamyl-tRNA(Gln) amid 99.5 1.2E-14 4.1E-19 136.8 4.0 73 128-215 1-73 (471)
7 3ppm_A Fatty-acid amide hydrol 99.4 7.3E-14 2.5E-18 134.8 4.7 83 118-215 60-143 (573)
8 1o9p_A Malonamidase E2; malona 99.4 3.1E-13 1E-17 125.1 4.3 68 128-215 2-69 (414)
9 2gi3_A Glutamyl-tRNA(Gln) amid 99.2 1.2E-12 4.1E-17 122.7 -1.4 72 121-215 3-74 (476)
10 3a1k_A Amidase; AS family enzy 98.4 1.1E-09 3.7E-14 104.3 -11.2 89 119-215 4-103 (521)
11 1w8x_P Protein P16, protein S, 45.0 6.6 0.00023 29.8 0.9 23 28-50 5-27 (117)
12 3shg_B VBHA; ampylation, adeny 39.1 41 0.0014 23.6 4.1 28 130-157 32-59 (61)
No 1
>3ip4_A Glutamyl-tRNA(Gln) amidotransferase subunit A; multi protein complex, ligase, ATP-binding, nucleotide-bindi protein biosynthesis; 1.90A {Staphylococcus aureus subsp} SCOP: c.117.1.1 PDB: 2df4_A 2dqn_A* 2g5h_A 2g5i_A* 2f2a_A
Probab=99.69 E-value=2.6e-17 Score=154.83 Aligned_cols=84 Identities=19% Similarity=0.355 Sum_probs=78.2
Q ss_pred cccccCHHHHHHHHHcCCCCHHHHHHHHHHHHHhhCCCcceEEeeChhHHHHHHHHHHHHH-HcCCccccccCCCCCccc
Q psy2056 124 QLLLNSAQKTALLIRTKQVSCVKVVEAFITRIRQVNPMLNAVVDERFNLALEEAKQVDILL-AASTKSVEEIGRDTPLLG 202 (220)
Q Consensus 124 ~Ll~lSateLa~~IRsgelTs~EVVeAyIeRIeevNp~LNA~V~~rfE~AL~eAr~lD~r~-a~g~~~~~~l~~~gPLlG 202 (220)
++..+|++++++++++|++|++|++++|++||++.|+.+|||++.++|+|+++|+++|+++ ++|. . |||+|
T Consensus 2 ~l~~~~~~~l~~~i~~g~~s~~el~~a~l~ri~~~~~~lna~~~~~~~~Al~~A~~~d~~~~~~g~-------~-gpL~G 73 (485)
T 3ip4_A 2 SIRYESVENLLTLIKDKKIKPSDVVKDIYDAIEETDPTIKSFLALDKENAIKKAQELDELQAKDQM-------D-GKLFG 73 (485)
T ss_dssp CGGGCCHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHCCEEEECHHHHHHHHHHHHHHHHTTCC-------C-STTTT
T ss_pred CcccCCHHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCCceEEEEECHHHHHHHHHHHHHHHHhcCC-------C-CCcCC
Confidence 4677899999999999999999999999999999999999999999999999999999988 6663 3 99999
Q ss_pred ceeeeeecccccC
Q psy2056 203 VPLTVKESVAVKV 215 (220)
Q Consensus 203 VPftIKDnIdVk~ 215 (220)
|||+|||||+++.
T Consensus 74 vPi~vKD~~~v~G 86 (485)
T 3ip4_A 74 IPMGIKDNIITNG 86 (485)
T ss_dssp CEEEEETTBCBTT
T ss_pred CEEEEEcCcccCC
Confidence 9999999999983
No 2
>2dc0_A Probable amidase; structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Thermus thermophilus}
Probab=99.68 E-value=8.4e-17 Score=149.60 Aligned_cols=80 Identities=25% Similarity=0.248 Sum_probs=75.3
Q ss_pred cCHHHHHHHHHcCCCCHHHHHHHHHHHHHhhCCCcceEEeeChhHHHHHHHHHHHHHHcCCccccccCCCCCcccceeee
Q psy2056 128 NSAQKTALLIRTKQVSCVKVVEAFITRIRQVNPMLNAVVDERFNLALEEAKQVDILLAASTKSVEEIGRDTPLLGVPLTV 207 (220)
Q Consensus 128 lSateLa~~IRsgelTs~EVVeAyIeRIeevNp~LNA~V~~rfE~AL~eAr~lD~r~a~g~~~~~~l~~~gPLlGVPftI 207 (220)
+++.++++++++|++|++|++++|++||++.|+ +|||++.++|+|+++|+++|+++++|.. .|||+||||+|
T Consensus 1 ~~~~~l~~~~~~g~~s~~el~~a~l~ri~~~~~-lna~~~~~~~~Al~~A~~~d~~~~~g~~-------~gpL~GvPi~v 72 (434)
T 2dc0_A 1 MDLLEAKRLLETGRTTPLALLEEALERAKAFQD-RNALAYLDEEAARKEALALTEELRRGQV-------RGPLHGLPLTV 72 (434)
T ss_dssp CCHHHHHHHHHTTSCCHHHHHHHHHHHHHHTGG-GCCEEEECHHHHHHHHHHHHHHHHTTCC-------CSTTTTCEEEE
T ss_pred CCHHHHHHHHHcCCCCHHHHHHHHHHHHHHhCC-CcEEEEcCHHHHHHHHHHHHHHHhcCCC-------CCCcCCeeEEE
Confidence 478999999999999999999999999999999 9999999999999999999999888753 68999999999
Q ss_pred eecccccC
Q psy2056 208 KESVAVKV 215 (220)
Q Consensus 208 KDnIdVk~ 215 (220)
||||+++.
T Consensus 73 KD~~~v~G 80 (434)
T 2dc0_A 73 KDLFPVKG 80 (434)
T ss_dssp ETTSCBTT
T ss_pred EeccccCC
Confidence 99999983
No 3
>1m22_A Peptide amidase, PAM; eleven-stranded beta sheet, covered double layers of alpha helices on TOP and bottom, hydrolase; HET: EPE; 1.40A {Stenotrophomonas maltophilia} SCOP: c.117.1.1 PDB: 1m21_A*
Probab=99.66 E-value=2.8e-16 Score=148.36 Aligned_cols=84 Identities=21% Similarity=0.345 Sum_probs=77.6
Q ss_pred cccccCHHHHHHHHHcCCCCHHHHHHHHHHHHHhhC---CCcceEEeeChhHHHHHHHHHHHHHHcCCccccccCCCCCc
Q psy2056 124 QLLLNSAQKTALLIRTKQVSCVKVVEAFITRIRQVN---PMLNAVVDERFNLALEEAKQVDILLAASTKSVEEIGRDTPL 200 (220)
Q Consensus 124 ~Ll~lSateLa~~IRsgelTs~EVVeAyIeRIeevN---p~LNA~V~~rfE~AL~eAr~lD~r~a~g~~~~~~l~~~gPL 200 (220)
++..+++.++++++++|++|++|++++|++||++.| |.+|||++.++| |+++|+++|+++++|.. .|||
T Consensus 7 ~~~~~~~~~l~~~l~~g~~s~~el~~a~l~ri~~~~~~~~~lna~~~~~~~-Al~~A~~~d~~~~~g~~-------~gpL 78 (503)
T 1m22_A 7 PYAETDVADLQARMTAGELDSTTLTQAYLQRIAALDRTGPRLRAVIELNPD-ALKEAAERDRERRDGRL-------RGPL 78 (503)
T ss_dssp TTTTCCHHHHHHHHHTTSCCHHHHHHHHHHHHHHHTTSTTCCCCEEEECTT-HHHHHHHHHHHHHTTCC-------CSTT
T ss_pred CcccCCHHHHHHHHHcCCCCHHHHHHHHHHHHHHhcCCCCceEEEEECCHH-HHHHHHHHHHHHHcCCC-------CCCc
Confidence 456679999999999999999999999999999999 999999999988 99999999998887753 6999
Q ss_pred ccceeeeeecccccC
Q psy2056 201 LGVPLTVKESVAVKV 215 (220)
Q Consensus 201 lGVPftIKDnIdVk~ 215 (220)
+||||+|||||+++.
T Consensus 79 ~GvPi~vKD~~~v~G 93 (503)
T 1m22_A 79 HGIPLLLKDNINAAP 93 (503)
T ss_dssp TTCEEEEETTBCCTT
T ss_pred CCceeEeecccccCC
Confidence 999999999999984
No 4
>3h0l_A Glutamyl-tRNA(Gln) amidotransferase subunit A; multi protein complex, ligase, protein biosynthesis; HET: ADP; 2.30A {Aquifex aeolicus} PDB: 3h0m_A 3h0r_A*
Probab=99.57 E-value=8.2e-16 Score=144.78 Aligned_cols=78 Identities=28% Similarity=0.440 Sum_probs=71.4
Q ss_pred ccccCHHHHHHHHHcCCCCHHHHHHHHHHHHHhhCCCcceEEeeChhHHHHHHHHHHHHHHcCCccccccCCCCCcccce
Q psy2056 125 LLLNSAQKTALLIRTKQVSCVKVVEAFITRIRQVNPMLNAVVDERFNLALEEAKQVDILLAASTKSVEEIGRDTPLLGVP 204 (220)
Q Consensus 125 Ll~lSateLa~~IRsgelTs~EVVeAyIeRIeevNp~LNA~V~~rfE~AL~eAr~lD~r~a~g~~~~~~l~~~gPLlGVP 204 (220)
+..++++++++++++|++|++|++++|++||++.|+.+|||++.++|+|+++|++.|++ .|||+|||
T Consensus 2 l~~~sa~~l~~~i~~g~~s~~el~~a~l~ri~~~~~~lna~~~~~~~~Al~~A~~~d~~-------------~gpL~GvP 68 (478)
T 3h0l_A 2 LWKKSLSELRELLKRGEVSPKEVVESFYDRYNQTEEKVKAYITPLYGKALKQAESLKER-------------ELPLFGIP 68 (478)
T ss_dssp CTTSCHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHCCEEEECHHHHHHHHHTCCCT-------------TSTTTTCE
T ss_pred CCcCCHHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCcCcEEEEeChHHHHHHHHhhchh-------------cCCcCCce
Confidence 34679999999999999999999999999999999999999999999999999877632 48999999
Q ss_pred eeeeecccccC
Q psy2056 205 LTVKESVAVKV 215 (220)
Q Consensus 205 ftIKDnIdVk~ 215 (220)
|+|||||+++.
T Consensus 69 i~vKD~~~~~G 79 (478)
T 3h0l_A 69 IAVKDNILVEG 79 (478)
T ss_dssp EEEETTBCCTT
T ss_pred EEEEcCccCCC
Confidence 99999999984
No 5
>3a2q_A 6-aminohexanoate-cyclic-dimer hydrolase; alpha/beta fold, nylon degradation; 1.80A {Arthrobacter SP} PDB: 3a2p_A
Probab=99.49 E-value=1.7e-14 Score=135.71 Aligned_cols=75 Identities=31% Similarity=0.442 Sum_probs=69.2
Q ss_pred cccccCHHHHHHHHHcCCCCHHHHHHHHHHHHHhhCCCcceEEeeChhHHHHHHHHHHHHHHcCCccccccCCCCCcccc
Q psy2056 124 QLLLNSAQKTALLIRTKQVSCVKVVEAFITRIRQVNPMLNAVVDERFNLALEEAKQVDILLAASTKSVEEIGRDTPLLGV 203 (220)
Q Consensus 124 ~Ll~lSateLa~~IRsgelTs~EVVeAyIeRIeevNp~LNA~V~~rfE~AL~eAr~lD~r~a~g~~~~~~l~~~gPLlGV 203 (220)
++.. ++.++++++++|++|++|++++|++||++.|+.+|||++.++|+|+++|++ | .|||+||
T Consensus 5 ~~~~-~~~~l~~~i~~g~~s~~el~~a~l~ri~~~~~~lna~~~~~~~~Al~~A~~-d---------------~gpL~Gv 67 (493)
T 3a2q_A 5 DLWQ-DATAQAELVRSGEISRTELLEATIAHVQAVNPEINAVIIPLFEKARRESEL-A---------------SGPFAGV 67 (493)
T ss_dssp CTTS-CHHHHHHHHHHSSSCHHHHHHHHHHHHHHHHHHHCCEEEECHHHHHHHHHH-C---------------CSTTTTC
T ss_pred hhhh-hHHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCccCeEEecCHHHHHHHhhh-c---------------CCCcCCc
Confidence 4556 899999999999999999999999999999999999999999999999987 5 1799999
Q ss_pred eeeeeecc-cccC
Q psy2056 204 PLTVKESV-AVKV 215 (220)
Q Consensus 204 PftIKDnI-dVk~ 215 (220)
||+||||| +++.
T Consensus 68 Pi~vKD~~~~v~G 80 (493)
T 3a2q_A 68 PYLLKDLTVVSQG 80 (493)
T ss_dssp EEEEESSSSCCTT
T ss_pred EEEEecCCcCcCC
Confidence 99999999 9984
No 6
>3kfu_E Glutamyl-tRNA(Gln) amidotransferase subunit A; ASPRS, gatcab, ATP-binding, aminoacyl-tRNA synthetase, ligas nucleotide-binding, protein biosynthesis, ligase-RNA comple; HET: H2U 5MU PSU; 3.00A {Thermus thermophilus}
Probab=99.48 E-value=1.2e-14 Score=136.79 Aligned_cols=73 Identities=29% Similarity=0.442 Sum_probs=66.5
Q ss_pred cCHHHHHHHHHcCCCCHHHHHHHHHHHHHhhCCCcceEEeeChhHHHHHHHHHHHHHHcCCccccccCCCCCcccceeee
Q psy2056 128 NSAQKTALLIRTKQVSCVKVVEAFITRIRQVNPMLNAVVDERFNLALEEAKQVDILLAASTKSVEEIGRDTPLLGVPLTV 207 (220)
Q Consensus 128 lSateLa~~IRsgelTs~EVVeAyIeRIeevNp~LNA~V~~rfE~AL~eAr~lD~r~a~g~~~~~~l~~~gPLlGVPftI 207 (220)
|+++++++++++|++|++|++++|++||++.|+.+|||++.+ |+|+++|++.|+ ..||+||||+|
T Consensus 1 ~~a~~l~~~~~~g~~s~~el~~a~l~ri~~~~~~lna~~~~~-~~al~~A~~~d~--------------~~pL~GvPi~v 65 (471)
T 3kfu_E 1 MLAHEIRARVARGEVSPLEVAQAYLKRVQELDPGLGAFLSLN-ERLLEEAEAVDP--------------GLPLAGLVVAV 65 (471)
T ss_dssp -CHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHCCEEEEC-CTTTHHHHTSCC--------------SCTTTTCEEEE
T ss_pred CcHHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCCccEEEEeC-HHHHHHHHhcCc--------------cCCcCCCeEEE
Confidence 578999999999999999999999999999999999999999 999999987652 23999999999
Q ss_pred eecccccC
Q psy2056 208 KESVAVKV 215 (220)
Q Consensus 208 KDnIdVk~ 215 (220)
||||+++.
T Consensus 66 KD~~~~~G 73 (471)
T 3kfu_E 66 KDNIATRG 73 (471)
T ss_dssp ETTBCCTT
T ss_pred ECCcccCC
Confidence 99999984
No 7
>3ppm_A Fatty-acid amide hydrolase 1; protein-inhibitor complex, FAAH, oxazole, oxadiazole, endoca degradation, membrane protein; HET: JG1 1DO; 1.78A {Rattus norvegicus} PDB: 2wj2_A* 3k7f_A* 3k83_A* 3k84_A* 3lj6_A* 3lj7_A 3oj8_A* 2wj1_A* 3pr0_A* 2wap_A* 1mt5_A* 2vya_A* 3qk5_A* 3qj8_A* 3qj9_A* 3qkv_A*
Probab=99.42 E-value=7.3e-14 Score=134.81 Aligned_cols=83 Identities=22% Similarity=0.245 Sum_probs=70.5
Q ss_pred CCccc-ccccccCHHHHHHHHHcCCCCHHHHHHHHHHHHHhhCCCcceEEeeChhHHHHHHHHHHHHHHcCCccccccCC
Q psy2056 118 LPPIT-NQLLLNSAQKTALLIRTKQVSCVKVVEAFITRIRQVNPMLNAVVDERFNLALEEAKQVDILLAASTKSVEEIGR 196 (220)
Q Consensus 118 ~Ppi~-~~Ll~lSateLa~~IRsgelTs~EVVeAyIeRIeevNp~LNA~V~~rfE~AL~eAr~lD~r~a~g~~~~~~l~~ 196 (220)
.|+.+ +++..++++++++++++|++|++|++++|++||++.|+.+||+++..+| +.++|++.+ .
T Consensus 60 ~~~~~~~~i~~~~~~~l~~~l~~g~~s~~ev~~a~l~ri~~~~~~~na~~~~~~~-a~~~a~~~~--------------~ 124 (573)
T 3ppm_A 60 NPDLDSEALLTLPLLQLVQKLQSGELSPEAVFFTYLGKAWEVNKGTNCVTSYLTD-CETQLSQAP--------------R 124 (573)
T ss_dssp CTTCCHHHHHHSCHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHHCCEEEECTT-HHHHHHHCC--------------T
T ss_pred CCCCChhhhhhCCHHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCccCEEEEECHH-HHHHHHhhh--------------h
Confidence 56654 7788999999999999999999999999999999999999999998865 544443321 1
Q ss_pred CCCcccceeeeeecccccC
Q psy2056 197 DTPLLGVPLTVKESVAVKV 215 (220)
Q Consensus 197 ~gPLlGVPftIKDnIdVk~ 215 (220)
.|||+||||+|||||+++.
T Consensus 125 ~gpL~GvPi~vKD~~~~~G 143 (573)
T 3ppm_A 125 QGLLYGVPVSLKECFSYKG 143 (573)
T ss_dssp TCTTTTCEEEEETTBCCBT
T ss_pred cCCcCCCeEEEEcccCCCC
Confidence 4899999999999999983
No 8
>1o9p_A Malonamidase E2; malonate; 1.8A {Bradyrhizobium japonicum} SCOP: c.117.1.1 PDB: 1o9o_A 1obl_A 1och_A 1obk_A 1obi_A 1o9q_A* 1obj_A 1o9n_A 1ock_A 1ocl_A 1ocm_A
Probab=99.35 E-value=3.1e-13 Score=125.10 Aligned_cols=68 Identities=16% Similarity=0.139 Sum_probs=61.9
Q ss_pred cCHHHHHHHHHcCCCCHHHHHHHHHHHHHhhCCCcceEEeeChhHHHHHHHHHHHHHHcCCccccccCCCCCcccceeee
Q psy2056 128 NSAQKTALLIRTKQVSCVKVVEAFITRIRQVNPMLNAVVDERFNLALEEAKQVDILLAASTKSVEEIGRDTPLLGVPLTV 207 (220)
Q Consensus 128 lSateLa~~IRsgelTs~EVVeAyIeRIeevNp~LNA~V~~rfE~AL~eAr~lD~r~a~g~~~~~~l~~~gPLlGVPftI 207 (220)
+++.++++++++|++|++|++++|++||++.|+.+|||++.++|+| + . ..+||+||||+|
T Consensus 2 ~~~~~l~~~i~~g~~s~~el~~a~l~ri~~~~~~lna~~~~~~~~a-~-----------~--------~~gpL~GvPi~v 61 (414)
T 1o9p_A 2 ISLADLQRRIETGELSPNAAIAQSHAAIEAREKEVHAFVRHDKSAR-A-----------Q--------ASGPLRGIAVGI 61 (414)
T ss_dssp CCHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHCCEEEECTTCC-C-----------C--------SSSTTTTCEEEE
T ss_pred CCHHHHHHHHHcCCCCHHHHHHHHHHHHHHhCccccEEEEeCHHHh-c-----------c--------cCCCcCCCEEEE
Confidence 5899999999999999999999999999999999999999998876 2 1 158999999999
Q ss_pred eecccccC
Q psy2056 208 KESVAVKV 215 (220)
Q Consensus 208 KDnIdVk~ 215 (220)
||||+++.
T Consensus 62 KD~~~v~G 69 (414)
T 1o9p_A 62 KDIIDTAN 69 (414)
T ss_dssp ETTBCCSS
T ss_pred EcccccCC
Confidence 99999984
No 9
>2gi3_A Glutamyl-tRNA(Gln) amidotransferase subunit A; TM1272, structural genomics, joint center for structura genomics, JCSG; HET: MSE MPD; 1.80A {Thermotoga maritima} SCOP: c.117.1.1 PDB: 3al0_A*
Probab=99.18 E-value=1.2e-12 Score=122.66 Aligned_cols=72 Identities=14% Similarity=0.311 Sum_probs=63.2
Q ss_pred ccccccccCHHHHHHHHHcCCCCHHHHHHHHHHHHHhhCCCcceEEeeChhHHHHHHHHHHHHHHcCCccccccCCCCCc
Q psy2056 121 ITNQLLLNSAQKTALLIRTKQVSCVKVVEAFITRIRQVNPMLNAVVDERFNLALEEAKQVDILLAASTKSVEEIGRDTPL 200 (220)
Q Consensus 121 i~~~Ll~lSateLa~~IRsgelTs~EVVeAyIeRIeevNp~LNA~V~~rfE~AL~eAr~lD~r~a~g~~~~~~l~~~gPL 200 (220)
++.++..+++.++ +++|++|++|++++|++||++.|+.+|||++.++|+|+ |+ . +||
T Consensus 3 ~~~~~~~~s~~~l---i~~g~~s~~el~~a~l~ri~~~~~~lna~~~~~~~~al------d~-------------~-gpL 59 (476)
T 2gi3_A 3 IDLDFRKLTIEEC---LKLSEEEREKLPQLSLETIKRLDPHVKAFISVRENVSV------EK-------------K-GKF 59 (476)
T ss_dssp SCSCGGGCCHHHH---TTSCHHHHTTHHHHHHHHHHHHHHHHCCEEEECCCCCC------CC-------------C-STT
T ss_pred CccccccCCHHHH---HHcCCCCHHHHHHHHHHHHHHhCCceeEEEecChhhhh------hc-------------c-CCc
Confidence 3456677899999 99999999999999999999999999999999988765 10 2 799
Q ss_pred ccceeeeeecccccC
Q psy2056 201 LGVPLTVKESVAVKV 215 (220)
Q Consensus 201 lGVPftIKDnIdVk~ 215 (220)
+||||+|||||+++.
T Consensus 60 ~GvPi~vKD~~~v~G 74 (476)
T 2gi3_A 60 WGIPVAIKDNILTLG 74 (476)
T ss_dssp TTCEEEEETTBCCSS
T ss_pred CCceEEEEcCccCCC
Confidence 999999999999984
No 10
>3a1k_A Amidase; AS family enzyme, hydrolase; 2.17A {Rhodococcus SP} PDB: 3a1i_A
Probab=98.37 E-value=1.1e-09 Score=104.26 Aligned_cols=89 Identities=11% Similarity=0.095 Sum_probs=64.5
Q ss_pred CcccccccccCHHHHHHHHHcCCCCH-HHHHHHHHHHHHhhCCCcceEE-eeChhHHHHHHHHHHHH-H--------HcC
Q psy2056 119 PPITNQLLLNSAQKTALLIRTKQVSC-VKVVEAFITRIRQVNPMLNAVV-DERFNLALEEAKQVDIL-L--------AAS 187 (220)
Q Consensus 119 Ppi~~~Ll~lSateLa~~IRsgelTs-~EVVeAyIeRIeevNp~LNA~V-~~rfE~AL~eAr~lD~r-~--------a~g 187 (220)
++++..-+..++.++...+.+++++. .+++++++++++++++..|+++ ...++++ .++.+.|+. . ..|
T Consensus 4 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~a~~~~~~~~g 82 (521)
T 3a1k_A 4 IRPDDKAIDAAARHYGITLDKTARLEWPALIDGALGSYDVVDQLYADEATPPTTSRE-HAVPSASENPLSAWYVTTSIPP 82 (521)
T ss_dssp CCCCHHHHHHHHHHTTCCCCTTHHHHHHHHHHHHTHHHHHHHHHHHHHSCCCCCCCC-EECCCTTTCTTSCEEEEEEECC
T ss_pred CCCCHHHHHHHHHHHhcccchhhHHHHHHHHHHHHHHHHHHHhhhcccccccCchhh-hhccccccchhhhhHHHHhhcC
Confidence 34444556677888888999999999 9999999999999887776666 5555555 444444321 0 011
Q ss_pred CccccccCCCCCcccceeeeeecccccC
Q psy2056 188 TKSVEEIGRDTPLLGVPLTVKESVAVKV 215 (220)
Q Consensus 188 ~~~~~~l~~~gPLlGVPftIKDnIdVk~ 215 (220)
. ..|||+||||+|||||+++.
T Consensus 83 ~-------~~gpL~GvPi~vKD~i~v~G 103 (521)
T 3a1k_A 83 T-------SDGVLTGRRVAIKDNVTVAG 103 (521)
T ss_dssp S-------SCCTTTTCEEEEETTBCCTT
T ss_pred C-------CCCCCCCCEEEEEcCcccCC
Confidence 1 25899999999999999983
No 11
>1w8x_P Protein P16, protein S, GPS; virus, P3 major capsid protein, P30 TAPE measure, P31 penton protein, P16 membrane protein; 4.20A {Enterobacteria phage PRD1} SCOP: i.6.1.1
Probab=44.98 E-value=6.6 Score=29.85 Aligned_cols=23 Identities=52% Similarity=0.889 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHhhcccccc
Q psy2056 28 KYLMWFGVRLLLILIWPLTRIRS 50 (220)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~~ 50 (220)
|.|.|.|--+.+||||---|-|.
T Consensus 5 kllywvggglvliliwlwfrnrp 27 (117)
T 1w8x_P 5 KLLYWVGGGLVLILIWLWFRNRP 27 (117)
T ss_dssp SSHHHHHHHHHHHHHHHHHHHTT
T ss_pred eeEeEecCchhhHHHHHHHccCh
Confidence 56889999999999997665553
No 12
>3shg_B VBHA; ampylation, adenylylation, toxin-antitoxin complex, FIC fold transfer, transferase-protein binding complex; HET: TLA; 1.50A {Bartonella schoenbuchensis R1}
Probab=39.12 E-value=41 Score=23.57 Aligned_cols=28 Identities=11% Similarity=0.239 Sum_probs=24.9
Q ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHh
Q psy2056 130 AQKTALLIRTKQVSCVKVVEAFITRIRQ 157 (220)
Q Consensus 130 ateLa~~IRsgelTs~EVVeAyIeRIee 157 (220)
..+..+..-.|++|..++++.|.+|+..
T Consensus 32 ~l~~~erwv~GEis~~e~i~~~~~r~~~ 59 (61)
T 3shg_B 32 VVAQMERVVVGELETSDVIKDLMERIKR 59 (61)
T ss_dssp HHHHHHHHHHTSSCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHHc
Confidence 4667888999999999999999999975
Done!