RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy2056
(220 letters)
>gnl|CDD|236029 PRK07487, PRK07487, amidase; Provisional.
Length = 469
Score = 76.2 bits (188), Expect = 4e-16
Identities = 34/83 (40%), Positives = 47/83 (56%), Gaps = 7/83 (8%)
Query: 129 SAQKTALLIRTKQVSCVKVVEAFITRIRQVNPMLNAVVDERFNLALEEAKQVDILLAAST 188
SA + A +R++ VS + EA + R+ VNP +NAVVD R AL +A VD A
Sbjct: 9 SAAELAAAVRSRDVSAREAAEAALARLDAVNPAINAVVDHRPEEALAQADAVDAARARG- 67
Query: 189 KSVEEIGRDTPLLGVPLTVKESV 211
++ G PL GVP+TVK +V
Sbjct: 68 ---DDPG---PLAGVPVTVKVNV 84
>gnl|CDD|223232 COG0154, GatA, Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit
and related amidases [Translation, ribosomal structure
and biogenesis].
Length = 475
Score = 64.2 bits (157), Expect = 4e-12
Identities = 38/92 (41%), Positives = 53/92 (57%), Gaps = 9/92 (9%)
Query: 125 LLLNSAQKTALLIRTKQVSCVKVVEAFITRIRQVNPMLNAVV--DERFNLALEEAKQVDI 182
L +A + A L+R K++S V++VEA++ RI +NP LNA V D LAL EA D
Sbjct: 4 LTELTAAELAALLRAKELSAVELVEAYLARIEALNPDLNAFVAVDPEAALALAEAAAADA 63
Query: 183 LLAASTKSVEEIGRDTPLLGVPLTVKESVAVK 214
LAA E +G PL GVP+ VK+++
Sbjct: 64 RLAAG----EPLG---PLAGVPIAVKDNIDTA 88
>gnl|CDD|235723 PRK06170, PRK06170, amidase; Provisional.
Length = 490
Score = 62.4 bits (152), Expect = 2e-11
Identities = 27/82 (32%), Positives = 41/82 (50%), Gaps = 8/82 (9%)
Query: 129 SAQKTALLIRTKQVSCVKVVEAFITRIRQVNPMLNAVVDERFNLALEEAKQVDILLAAST 188
A + A + +VS V++ + I RI + + +NA+V F+ A A+ D A
Sbjct: 13 PATELAAALAAGEVSSVELTDLAIARIERHDGKINAIVVRDFDRARAAARAADAARAR-- 70
Query: 189 KSVEEIGRDTPLLGVPLTVKES 210
G PLLG+P+TVKES
Sbjct: 71 ------GERGPLLGIPVTVKES 86
>gnl|CDD|234572 PRK00012, gatA, aspartyl/glutamyl-tRNA amidotransferase subunit A;
Reviewed.
Length = 459
Score = 59.4 bits (145), Expect = 2e-10
Identities = 26/78 (33%), Positives = 45/78 (57%), Gaps = 8/78 (10%)
Query: 137 IRTKQVSCVKVVEAFITRIRQVNPMLNAVVDERFNLALEEAKQVDILLAASTKSVEEIGR 196
++ K++S V++ +A++ RI +V+P LNA + AL +AK D LAA G
Sbjct: 1 LKNKEISAVELTQAYLDRIEEVDPKLNAFITVTEEEALAQAKAADAKLAA--------GE 52
Query: 197 DTPLLGVPLTVKESVAVK 214
PL G+P+ +K+++ K
Sbjct: 53 AGPLAGIPIAIKDNICTK 70
>gnl|CDD|216494 pfam01425, Amidase, Amidase.
Length = 431
Score = 56.9 bits (138), Expect = 1e-09
Identities = 26/68 (38%), Positives = 36/68 (52%), Gaps = 8/68 (11%)
Query: 147 VVEAFITRIRQVNPMLNAVVDERFNLALEEAKQVDILLAASTKSVEEIGRDTPLLGVPLT 206
+VEA++ R NP LNA V F AL +AK D A K PL GVP++
Sbjct: 2 LVEAYLDRAEAANPKLNAFVTVFFEEALAQAKAADKRRARKEKG--------PLHGVPIS 53
Query: 207 VKESVAVK 214
+K+++ VK
Sbjct: 54 LKDNIDVK 61
>gnl|CDD|236028 PRK07486, PRK07486, amidase; Provisional.
Length = 484
Score = 56.9 bits (138), Expect = 1e-09
Identities = 35/99 (35%), Positives = 50/99 (50%), Gaps = 8/99 (8%)
Query: 117 PLPPITNQLLLNSAQKTALLIRTKQVSCVKVVEAFITRIRQVNPMLNAVVDERFNLAL-E 175
P P + ++ SA + IR +QVSCV+V+ A++ I +VNP +NA+V R AL
Sbjct: 1 PASPPPDPIVRLSAHALSRAIRRRQVSCVEVMRAYLAHIERVNPAVNAIVALRDRDALLA 60
Query: 176 EAKQVDILLAASTKSVEEIGRDTPLLGVPLTVKESVAVK 214
EA + D LA E G L G+P K+ K
Sbjct: 61 EAAEKDAALARG----EYRG---WLHGMPQAPKDLAPTK 92
>gnl|CDD|180608 PRK06529, PRK06529, amidase; Provisional.
Length = 482
Score = 54.4 bits (131), Expect = 8e-09
Identities = 27/80 (33%), Positives = 42/80 (52%), Gaps = 13/80 (16%)
Query: 130 AQKTALLIRTKQVSCVKVVEAFITRIRQVNPMLNAVVDERFNLALEEAKQVDILLAASTK 189
A A ++ QV+ +++V I + +++NP LNA+V ER+ ALEEAKQ D
Sbjct: 6 ATAMAQAVQQGQVTPLELVTQAIYKAKKLNPTLNAIVSERYEEALEEAKQRDFS------ 59
Query: 190 SVEEIGRDTPLLGVPLTVKE 209
P GVP+ +K+
Sbjct: 60 -------GKPFAGVPIFLKD 72
>gnl|CDD|181154 PRK07869, PRK07869, amidase; Provisional.
Length = 468
Score = 52.3 bits (126), Expect = 4e-08
Identities = 25/78 (32%), Positives = 35/78 (44%), Gaps = 13/78 (16%)
Query: 137 IRTKQVSCVKVVEAFITRIRQVNPMLNAVVDERFNLALEEAKQVDILLAASTKSVEEIGR 196
IR +VS +VVEA I R VNP LNA+ F+ A + A + +
Sbjct: 24 IRAGRVSAAEVVEAAIARAEAVNPALNALAYAAFDRARDRAARPG-------------SQ 70
Query: 197 DTPLLGVPLTVKESVAVK 214
GVP +K++V V
Sbjct: 71 GGFFSGVPTFIKDNVDVA 88
>gnl|CDD|236030 PRK07488, PRK07488, indole acetimide hydrolase; Validated.
Length = 472
Score = 48.8 bits (117), Expect = 6e-07
Identities = 25/85 (29%), Positives = 43/85 (50%), Gaps = 9/85 (10%)
Query: 129 SAQKTALLIRTKQVSCVKVVEAFITRIRQVNPMLNAVVDERFNLALEEAKQVDILLAAST 188
S + A +R+ ++SC+++VEA + R + P LNA AL A+++D AA
Sbjct: 12 SLTEAAAALRSGRLSCLELVEALLARAAALAP-LNAFTTVDAEGALAAARRIDAQRAA-- 68
Query: 189 KSVEEIGRDTPLLGVPLTVKESVAV 213
G L GVP+ +K+++
Sbjct: 69 ------GAALLLAGVPIVIKDNINT 87
>gnl|CDD|236409 PRK09201, PRK09201, amidase; Provisional.
Length = 465
Score = 48.8 bits (117), Expect = 6e-07
Identities = 32/84 (38%), Positives = 41/84 (48%), Gaps = 15/84 (17%)
Query: 129 SAQKTALLIRTKQVSCVKVVEAFITRIRQVNPMLNA---VVDERFNLALEEAKQVDILLA 185
SA + A +R ++S V +A + RI + NP LNA V ER AL EA ++D A
Sbjct: 8 SAAEIAAAVRAGELSARAVAQATLARIARANPQLNAFTAVTAER---ALAEAARIDAARA 64
Query: 186 ASTKSVEEIGRDT-PLLGVPLTVK 208
A G PL GVP VK
Sbjct: 65 A--------GEPLGPLAGVPFAVK 80
>gnl|CDD|171524 PRK12470, PRK12470, amidase; Provisional.
Length = 462
Score = 47.6 bits (113), Expect = 2e-06
Identities = 24/91 (26%), Positives = 41/91 (45%), Gaps = 8/91 (8%)
Query: 123 NQLLLNSAQKTALLIRTKQVSCVKVVEAFITRIRQVNPMLNAVVDERFNLALEEAKQVDI 182
L A A ++ +++ ++E ++ RI +++ L A F+ A EA+
Sbjct: 4 TDLAFAGAAAQARMLADGELTAPMLLEVYLQRIERLDSHLRAYRVVLFDRARAEAEAAQQ 63
Query: 183 LLAASTKSVEEIGRDTPLLGVPLTVKESVAV 213
L A G PLLGVP+ +K+ V V
Sbjct: 64 RLDA--------GERLPLLGVPIAIKDDVDV 86
>gnl|CDD|235686 PRK06061, PRK06061, amidase; Provisional.
Length = 483
Score = 46.2 bits (110), Expect = 5e-06
Identities = 33/100 (33%), Positives = 45/100 (45%), Gaps = 17/100 (17%)
Query: 114 RHKPLPPITNQLLLNSAQKTALLIRTKQVSCVKVVEAFITRIRQVNPMLNAVVDERFNLA 173
+ LP +T+Q A + + V+ V++V + RI P LNA R A
Sbjct: 13 GNDRLPGLTDQ---------AYQLASGAVTSVELVRRSLRRIEASQPTLNAFRVVRAEAA 63
Query: 174 LEEAKQVDILLAASTKSVEEIGRDTPLLGVPLTVKESVAV 213
L EA + D AA G PLLGVP+ VK+ V V
Sbjct: 64 LAEAAEADRRRAA--------GDRLPLLGVPIAVKDDVDV 95
>gnl|CDD|233982 TIGR02715, amido_AtzE, amidohydrolase, AtzE family. Members of
this protein family are aminohydrolases related to, but
distinct from, glutamyl-tRNA(Gln) amidotransferase
subunit A. The best characterized member is the biuret
hydrolase of Pseudomonas sp. ADP, which hydrolyzes
ammonia from the three-nitrogen compound biuret to yield
allophanate. Allophanate is also an intermediate in urea
degradation by the urea carboxylase/allophanate
hydrolase pathway, an alternative to urease [Unknown
function, Enzymes of unknown specificity].
Length = 452
Score = 44.8 bits (106), Expect = 1e-05
Identities = 29/81 (35%), Positives = 37/81 (45%), Gaps = 9/81 (11%)
Query: 129 SAQKTALLIRTKQVSCVKVVEAFITRIRQVNPMLNAVVDERFNLALEEAKQVDILLAAST 188
S + A IR+ +VS V EA + RI Q + LNA AL +A ++D LAA
Sbjct: 1 SIVEIAGAIRSGRVSARAVAEATLARINQADGGLNAFTAVTAERALADAARIDADLAA-- 58
Query: 189 KSVEEIGRDTPLL-GVPLTVK 208
G L GVP VK
Sbjct: 59 ------GSPLGPLAGVPFAVK 73
>gnl|CDD|235915 PRK07042, PRK07042, amidase; Provisional.
Length = 464
Score = 43.8 bits (104), Expect = 3e-05
Identities = 30/85 (35%), Positives = 43/85 (50%), Gaps = 14/85 (16%)
Query: 138 RTKQVSCVKVVEAFITRIRQVNPMLNAVVDERFNLALEEAKQVDILLAASTK---SVEEI 194
R + +S V+V EA + I + P LNA+ A A+ AST E +
Sbjct: 17 RARSLSPVEVTEAVLAHIARWEPHLNALYAFDPEAARAAAR-------ASTARWAKGEPL 69
Query: 195 GRDTPLLGVPLTVKESVAVK-VPAP 218
G PL GVP+T+KE++A + VP P
Sbjct: 70 G---PLDGVPVTIKENIATRGVPVP 91
>gnl|CDD|232842 TIGR00132, gatA, aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase,
A subunit. In many species, Gln--tRNA ligase is
missing. tRNA(Gln) is misacylated with Glu after which a
heterotrimeric amidotransferase converts Glu to Gln.
This model represents the amidase chain of that
heterotrimer, encoded by the gatA gene. In the Archaea,
Asn--tRNA ligase is also missing. This amidase subunit
may also function in the conversion of Asp-tRNA(Asn) to
Asn-tRNA(Asn), presumably with a different recognition
unit to replace gatB. Both Methanococcus jannaschii and
Methanobacterium thermoautotrophicum have both authentic
gatB and a gatB-related gene, but only one gene like
gatA. It has been shown that gatA can be expressed only
when gatC is also expressed. In most species expressing
the amidotransferase, the gatC ortholog is about 90
residues in length, but in Mycoplasma genitalium and
Mycoplasma pneumoniae the gatC equivalent is as the
C-terminal domain of a much longer protein. Not
surprisingly, the Mycoplasmas also represent the most
atypical lineage of gatA orthology. This orthology group
is more narrowly defined here than in Proc Natl Acad Aci
USA 94, 11819-11826 (1997). In particular, a Rhodococcus
homolog found in association with nitrile hydratase
genes and described as an enantiomer-selective amidase
active on several 2-aryl propionamides, is excluded
here. It is likely, however, that the amidase subunit
GatA is not exclusively a part of the Glu-tRNA(Gln)
amidotransferase heterotrimer and restricted to that
function in all species [Protein synthesis, tRNA
aminoacylation].
Length = 460
Score = 38.1 bits (89), Expect = 0.002
Identities = 24/79 (30%), Positives = 45/79 (56%), Gaps = 12/79 (15%)
Query: 136 LIRTKQVSCVKVVEAFITRIRQVNPMLNAVVDERFNLALEEAKQVDILLAASTKSVEEIG 195
L++ K++S +V+EA + RI +NA ++ AL++AK++D + I
Sbjct: 4 LLKKKEISIKEVLEASLDRIEANKDKINAFLEVTVEKALKQAKKLD----------KAI- 52
Query: 196 RDTPLLGVPLTVKESVAVK 214
TPL G+P+ VK++++ K
Sbjct: 53 -LTPLAGIPIAVKDNISTK 70
>gnl|CDD|180437 PRK06169, PRK06169, putative amidase; Provisional.
Length = 466
Score = 36.5 bits (85), Expect = 0.007
Identities = 21/75 (28%), Positives = 35/75 (46%), Gaps = 13/75 (17%)
Query: 138 RTKQVSCVKVVEAFITRIRQVNPMLNAVVDERFNLALEEAKQVDILLAASTK---SVEEI 194
R ++S V+ +A + RI + +P +NA AL A+ AS + E
Sbjct: 17 RRGELSPVEATQAVLDRIDRRDPAVNAFCLVDAEGALAAAR-------ASEERWRRGEPC 69
Query: 195 GRDTPLLGVPLTVKE 209
G L GVP+++K+
Sbjct: 70 G---LLDGVPVSIKD 81
>gnl|CDD|235855 PRK06707, PRK06707, amidase; Provisional.
Length = 536
Score = 33.7 bits (77), Expect = 0.058
Identities = 28/116 (24%), Positives = 53/116 (45%), Gaps = 27/116 (23%)
Query: 114 RHKPLPPITNQL----LLNSAQKTALL-----------IRTKQVSCVKVVEAFITRIRQV 158
+ + L PI NQL + N K + I ++S ++ ++ RI++
Sbjct: 42 KERVLQPIHNQLKGINIENVKIKEKEVVNATVDELQKMIDDGKLSYEELTSIYLFRIQEH 101
Query: 159 --NPM-LNAVVDERFNLALEEAKQVDILLAASTKSVEEIGRDTPLLGVPLTVKESV 211
N + LN+V + N A+EEA+++D + + L G+P+ VK++V
Sbjct: 102 DQNGITLNSVTEINPN-AMEEARKLD--------QERSRNKKSNLYGIPVVVKDNV 148
>gnl|CDD|180626 PRK06565, PRK06565, amidase; Validated.
Length = 566
Score = 33.6 bits (77), Expect = 0.066
Identities = 28/81 (34%), Positives = 42/81 (51%), Gaps = 13/81 (16%)
Query: 139 TKQVSCVKVVEAFITRIRQVN-----PMLNAVVDERFNLALEEAKQVDILLAASTKSVEE 193
+ + + V++V+A++ RI + LNAVV R AL+EA+ D A E
Sbjct: 18 SGRTTAVELVKAYLARIDAYDGPATGTALNAVV-VRNPDALKEAEASD----ARRARGET 72
Query: 194 IGRDTPLLGVPLTVKESVAVK 214
+G PL G+P T K+S VK
Sbjct: 73 LG---PLDGIPYTAKDSYLVK 90
>gnl|CDD|236161 PRK08137, PRK08137, amidase; Provisional.
Length = 497
Score = 31.7 bits (72), Expect = 0.26
Identities = 21/90 (23%), Positives = 38/90 (42%), Gaps = 13/90 (14%)
Query: 133 TALLIRTKQVSCVKVVEAF---ITRIRQVNPMLNAVVDERFNLALEEAKQVDILLAASTK 189
+ ++ A+ I RI + P LNAV++ + A +A +D A
Sbjct: 11 LQAAMPAGAAPASQLTRAYLQRIARIDRDGPRLNAVIELNPD-AEADAAALDAERKA--- 66
Query: 190 SVEEIGR-DTPLLGVPLTVKESVAVKVPAP 218
G+ PL G+P+ +K+++ P P
Sbjct: 67 -----GKVRGPLHGIPVLLKDNIDAADPMP 91
>gnl|CDD|223881 COG0811, TolQ, Biopolymer transport proteins [Intracellular
trafficking and secretion].
Length = 216
Score = 29.6 bits (67), Expect = 1.1
Identities = 28/128 (21%), Positives = 43/128 (33%), Gaps = 20/128 (15%)
Query: 90 LMWFGVRLLLILIWPLT------------RIRSLSYRHKPLPPITNQLLLNSAQKTALLI 137
L+ + L ++ WPL R+ R + + L ++ K A
Sbjct: 11 LVMILLLLGSVVSWPLLLLKILALALAGERLSLFEKRF-----WSGRSLEDAVLKLAESR 65
Query: 138 RTKQVSCVKVVEAF--ITRIRQVNPMLNAVVDERFNLALEEAKQ-VDILLAASTKSVEEI 194
+ A + RI + L A + ER ALEEA + L + I
Sbjct: 66 DPLSALELIFASAINELRRIERAGLKLGAPLKERARRALEEAIAREERRLERGLTLLATI 125
Query: 195 GRDTPLLG 202
G P LG
Sbjct: 126 GSIAPFLG 133
>gnl|CDD|183428 PRK12311, rpsB, 30S ribosomal protein S2/unknown domain fusion
protein; Provisional.
Length = 326
Score = 28.2 bits (63), Expect = 3.5
Identities = 19/75 (25%), Positives = 35/75 (46%), Gaps = 11/75 (14%)
Query: 146 KVVEAFITRIRQVNPMLNA------VVDERFNLALEEAKQVDILLAASTKSVEEIGRDTP 199
K + I R+R+++ +L++ ER L E K L + ++++G
Sbjct: 100 KTISGSIQRLRKLDEVLSSGEANGYTKKERLTLQRERDK-----LDRALGGIKDMGGLPD 154
Query: 200 LLGVPLTVKESVAVK 214
LL V T KE +A++
Sbjct: 155 LLFVIDTNKEDIAIQ 169
>gnl|CDD|239495 cd03401, Band_7_prohibitin, Band_7_prohibitin. A subgroup of the
band 7 domain of flotillin (reggie) like proteins. This
subgroup group includes proteins similar to prohibitin
(a lipid raft-associated integral membrane protein).
Individual proteins of this band 7 domain family may
cluster to form membrane microdomains which may in turn
recruit multiprotein complexes. These microdomains in
addition to being stable scaffolds may also be also
dynamic units with their own regulatory functions.
Prohibitin is a mitochondrial inner-membrane protein
which may act as a chaperone for the stabilization of
mitochondrial proteins. Human prohibitin forms a
heter-oligomeric complex with Bap-37 (prohibitin 2, a
band 7 domain carrying homologue). This complex may
protect non-assembled membrane proteins against
proteolysis by the m-AAA protease. Prohibitin and Bap-37
yeast homologues have been implicated in yeast longevity
and, in the maintenance of mitochondrial morphology.
Length = 196
Score = 27.9 bits (63), Expect = 3.6
Identities = 24/79 (30%), Positives = 39/79 (49%), Gaps = 11/79 (13%)
Query: 111 LSYRHKPLPPITNQLL-LNSAQKTA--LLIRTKQVSCVKVVEAFITRIRQVNPMLN--AV 165
Y + LP I N++L AQ TA L+ + ++VS + EA R + +L+ ++
Sbjct: 87 EDYDERVLPSIINEVLKAVVAQFTAEELITQREEVS-ALIREALTERAKDFGIILDDVSI 145
Query: 166 VD----ERFNLALEEAKQV 180
+ F A+ EAKQV
Sbjct: 146 THLTFSKEFTKAV-EAKQV 163
>gnl|CDD|152844 pfam12410, rpo30_N, Poxvirus DNA dependent RNA polymerase 30kDa
subunit. This family of proteins is found in viruses.
Proteins in this family are typically between 193 and
259 amino acids in length. The family is found in
association with pfam01096. There are two conserved
sequence motifs: GIEYSKD and LRY. This family is N
terminal of the 30 kDa subunit of poxvirus
DNA-d-RNA-pol. It has structural similarity to the
eukaryotic transcriptional elongation factor SII.
Length = 136
Score = 27.3 bits (61), Expect = 4.3
Identities = 22/72 (30%), Positives = 34/72 (47%), Gaps = 12/72 (16%)
Query: 111 LSYRHKPLPP-------ITNQL-LLNSAQKTALLIRTKQVSCVKV-VEAFITRIRQVN-- 159
LSYR+KPL + + + N +K L + CVK VE I ++R +
Sbjct: 66 LSYRNKPLIETNKEYADLCDMIRSTNGTEKEILRYLLFGIKCVKKGVEYDIDKLRDYDYD 125
Query: 160 PMLNAVVDERFN 171
N V+DE++N
Sbjct: 126 EYFN-VLDEKYN 136
>gnl|CDD|222958 PHA02998, PHA02998, RNA polymerase subunit; Provisional.
Length = 195
Score = 27.0 bits (60), Expect = 6.6
Identities = 20/72 (27%), Positives = 32/72 (44%), Gaps = 10/72 (13%)
Query: 111 LSYRHKPLPP-------ITNQL-LLNSAQKTALLIRTKQVSCVKV-VEAFITRIRQVN-P 160
LSYR+KP + + + N +K L + C+K VE I +I V+
Sbjct: 73 LSYRNKPSIETNLEYKDLCDMIRGTNGTEKEILRYLLFGIKCIKKGVEYDIDKIPDVDYD 132
Query: 161 MLNAVVDERFNL 172
V+DE++N
Sbjct: 133 DYFNVLDEKYNT 144
>gnl|CDD|216486 pfam01415, IL7, Interleukin 7/9 family. IL-7 is a cytokine that
acts as a growth factor for early lymphoid cells of both
B- and T-cell lineages. IL-9 is a multi-functional
cytokine that, although originally described as a T-cell
growth factor, its function in T-cell response remains
unclear.
Length = 125
Score = 26.4 bits (58), Expect = 7.4
Identities = 12/47 (25%), Positives = 17/47 (36%), Gaps = 4/47 (8%)
Query: 148 VEAFITRIRQVNPMLNAVVDERFNLALEEAKQ-VDILLAASTKSVEE 193
F ++ Q N RFNL KQ V++L + S
Sbjct: 49 EPCFAEKLSQ---FTNMTQSTRFNLHFSRVKQGVEVLKNCTCPSFSC 92
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.326 0.138 0.404
Gapped
Lambda K H
0.267 0.0721 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 11,062,376
Number of extensions: 1062474
Number of successful extensions: 1393
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1377
Number of HSP's successfully gapped: 43
Length of query: 220
Length of database: 10,937,602
Length adjustment: 93
Effective length of query: 127
Effective length of database: 6,812,680
Effective search space: 865210360
Effective search space used: 865210360
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 57 (25.8 bits)