RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy2056
         (220 letters)



>d2f2aa1 c.117.1.1 (A:1-485) Glutamyl-tRNA(Gln) amidotransferase
           subunit A {Staphylococcus aureus [TaxId: 1280]}
          Length = 485

 Score = 82.5 bits (203), Expect = 5e-19
 Identities = 18/86 (20%), Positives = 40/86 (46%), Gaps = 7/86 (8%)

Query: 129 SAQKTALLIRTKQVSCVKVVEAFITRIRQVNPMLNAVVDERFNLALEEAKQVDILLAAST 188
           S +    LI+ K++    VV+     I + +P + + +      A+++A+++D L A   
Sbjct: 7   SVENLLTLIKDKKIKPSDVVKDIYDAIEETDPTIKSFLALDKENAIKKAQELDELQAKDQ 66

Query: 189 KSVEEIGRDTPLLGVPLTVKESVAVK 214
                   D  L G+P+ +K+++   
Sbjct: 67  -------MDGKLFGIPMGIKDNIITN 85


>d1mt5a_ c.117.1.1 (A:) Fatty acid amide hydrolase (oleamide
           hydrolase) {Rat (Rattus norvegicus) [TaxId: 10116]}
          Length = 537

 Score = 73.2 bits (178), Expect = 9e-16
 Identities = 17/107 (15%), Positives = 41/107 (38%), Gaps = 16/107 (14%)

Query: 109 RSLSYRHKPLPPITNQLLLN-SAQKTALLIRTKQVSCVKVVEAFITRIRQVNPMLNAVVD 167
           +++       P + ++ LL     +    +++ ++S   V   ++ +  +VN   N V  
Sbjct: 21  KAVQRFRLQNPDLDSEALLTLPLLQLVQKLQSGELSPEAVFFTYLGKAWEVNKGTNCVTS 80

Query: 168 ERFNLALEEAKQVDILLAASTKSVEEIGRDTPLLGVPLTVKESVAVK 214
              +   + ++                 R   L GVP+++KE  + K
Sbjct: 81  YLTDCETQLSQA---------------PRQGLLYGVPVSLKECFSYK 112


>d1m22a_ c.117.1.1 (A:) Peptide amidase Pam {Stenotrophomonas
           maltophilia [TaxId: 40324]}
          Length = 490

 Score = 69.8 bits (169), Expect = 1e-14
 Identities = 19/89 (21%), Positives = 37/89 (41%), Gaps = 11/89 (12%)

Query: 129 SAQKTALLIRTKQVSCVKVVEAFITRIR---QVNPMLNAVVDERFNLALEEAKQVDILLA 185
                   +   ++    + +A++ RI    +  P L AV++   + AL+EA + D    
Sbjct: 8   DVADLQARMTAGELDSTTLTQAYLQRIAALDRTGPRLRAVIELNPD-ALKEAAERDRERR 66

Query: 186 ASTKSVEEIGRDTPLLGVPLTVKESVAVK 214
                    G   PL G+PL +K+++   
Sbjct: 67  DG----RLRG---PLHGIPLLLKDNINAA 88


>d2gi3a1 c.117.1.1 (A:1-475) Glutamyl-tRNA(Gln) amidotransferase
           subunit A {Thermotoga maritima [TaxId: 2336]}
          Length = 475

 Score = 64.1 bits (155), Expect = 1e-12
 Identities = 10/79 (12%), Positives = 32/79 (40%), Gaps = 20/79 (25%)

Query: 136 LIRTKQVSCVKVVEAFITRIRQVNPMLNAVVDERFNLALEEAKQVDILLAASTKSVEEIG 195
            ++  +    K+ +  +  I++++P + A +  R N+++E+                   
Sbjct: 14  CLKLSEEEREKLPQLSLETIKRLDPHVKAFISVRENVSVEKKG----------------- 56

Query: 196 RDTPLLGVPLTVKESVAVK 214
                 G+P+ +K+++   
Sbjct: 57  ---KFWGIPVAIKDNILTL 72


>d1ocka_ c.117.1.1 (A:) Malonamidase E2 {Bradyrhizobium japonicum
           [TaxId: 375]}
          Length = 412

 Score = 60.1 bits (144), Expect = 2e-11
 Identities = 11/86 (12%), Positives = 24/86 (27%), Gaps = 20/86 (23%)

Query: 129 SAQKTALLIRTKQVSCVKVVEAFITRIRQVNPMLNAVVDERFNLALEEAKQVDILLAAST 188
           S       I T ++S    +      I      ++A V    +   + +           
Sbjct: 3   SLADLQRRIETGELSPNAAIAQSHAAIEAREKEVHAFVRHDKSARAQASG---------- 52

Query: 189 KSVEEIGRDTPLLGVPLTVKESVAVK 214
                     PL G+ + +K+ +   
Sbjct: 53  ----------PLRGIAVGIKDIIDTA 68


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.326    0.138    0.404 

Gapped
Lambda     K      H
   0.267   0.0637    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 745,811
Number of extensions: 31548
Number of successful extensions: 80
Number of sequences better than 10.0: 1
Number of HSP's gapped: 73
Number of HSP's successfully gapped: 8
Length of query: 220
Length of database: 2,407,596
Length adjustment: 82
Effective length of query: 138
Effective length of database: 1,281,736
Effective search space: 176879568
Effective search space used: 176879568
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 51 (23.6 bits)