Query psy2059
Match_columns 126
No_of_seqs 138 out of 1157
Neff 9.1
Searched_HMMs 46136
Date Fri Aug 16 23:09:57 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy2059.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/2059hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02473 glutathione S-transfe 100.0 4.6E-27 1E-31 163.2 13.5 110 1-113 1-111 (214)
2 PRK15113 glutathione S-transfe 99.9 8.8E-27 1.9E-31 162.1 12.2 106 3-111 6-115 (214)
3 PLN02395 glutathione S-transfe 99.9 2.5E-26 5.5E-31 159.5 13.6 115 1-119 1-116 (215)
4 PRK09481 sspA stringent starva 99.9 3.5E-26 7.7E-31 158.8 12.0 101 3-110 11-111 (211)
5 KOG0867|consensus 99.9 2.6E-26 5.7E-31 161.2 9.8 116 1-119 1-119 (226)
6 PRK13972 GSH-dependent disulfi 99.9 1.2E-25 2.5E-30 156.4 11.5 107 3-113 2-112 (215)
7 COG0625 Gst Glutathione S-tran 99.9 2.2E-25 4.8E-30 154.6 12.0 113 3-120 1-117 (211)
8 KOG0868|consensus 99.9 1.3E-25 2.9E-30 149.1 8.0 107 3-113 6-113 (217)
9 PRK10542 glutathionine S-trans 99.9 1.6E-24 3.4E-29 149.0 10.0 109 3-115 1-111 (201)
10 KOG0406|consensus 99.9 4.1E-24 8.9E-29 148.6 11.0 108 3-116 10-118 (231)
11 TIGR01262 maiA maleylacetoacet 99.9 1.2E-23 2.6E-28 145.5 12.3 105 4-112 1-106 (210)
12 PRK11752 putative S-transferas 99.9 3.6E-23 7.8E-28 148.3 12.8 101 2-109 44-154 (264)
13 PRK10357 putative glutathione 99.9 6.4E-23 1.4E-27 141.2 11.8 105 3-113 1-105 (202)
14 cd03052 GST_N_GDAP1 GST_N fami 99.9 2.9E-23 6.3E-28 122.0 8.0 73 3-78 1-73 (73)
15 cd03045 GST_N_Delta_Epsilon GS 99.9 9E-23 2E-27 119.8 8.0 74 3-79 1-74 (74)
16 cd03048 GST_N_Ure2p_like GST_N 99.9 3.1E-22 6.6E-27 119.6 9.1 76 3-82 2-80 (81)
17 cd03050 GST_N_Theta GST_N fami 99.9 2.9E-22 6.3E-27 118.4 8.8 76 3-81 1-76 (76)
18 PF13417 GST_N_3: Glutathione 99.9 4.5E-22 9.7E-27 117.4 7.3 74 5-84 1-74 (75)
19 cd03053 GST_N_Phi GST_N family 99.9 8.2E-22 1.8E-26 116.3 8.4 74 3-79 2-75 (76)
20 cd03057 GST_N_Beta GST_N famil 99.9 1.7E-21 3.7E-26 115.3 8.4 76 3-82 1-77 (77)
21 cd03041 GST_N_2GST_N GST_N fam 99.9 1.1E-21 2.4E-26 116.3 7.4 74 3-81 2-77 (77)
22 cd03056 GST_N_4 GST_N family, 99.9 1.6E-21 3.4E-26 114.0 7.9 73 3-78 1-73 (73)
23 cd03047 GST_N_2 GST_N family, 99.9 1.5E-21 3.4E-26 114.4 7.9 73 3-78 1-73 (73)
24 cd03051 GST_N_GTT2_like GST_N 99.9 1.8E-21 3.9E-26 113.8 8.0 74 3-78 1-74 (74)
25 cd03059 GST_N_SspA GST_N famil 99.9 2.4E-21 5.2E-26 113.3 8.4 73 3-81 1-73 (73)
26 cd03044 GST_N_EF1Bgamma GST_N 99.9 3E-21 6.4E-26 113.9 8.6 73 3-79 1-74 (75)
27 PF02798 GST_N: Glutathione S- 99.9 2.6E-21 5.7E-26 114.5 7.3 74 1-79 1-76 (76)
28 cd03046 GST_N_GTT1_like GST_N 99.9 5.7E-21 1.2E-25 112.5 8.6 76 3-82 1-76 (76)
29 cd03058 GST_N_Tau GST_N family 99.8 7E-21 1.5E-25 111.9 8.3 73 3-81 1-74 (74)
30 PRK10387 glutaredoxin 2; Provi 99.8 6E-21 1.3E-25 132.0 9.3 101 3-113 1-101 (210)
31 cd03042 GST_N_Zeta GST_N famil 99.8 7.8E-21 1.7E-25 111.1 7.9 73 3-78 1-73 (73)
32 cd03076 GST_N_Pi GST_N family, 99.8 5.5E-21 1.2E-25 112.2 5.9 72 2-79 1-72 (73)
33 cd03060 GST_N_Omega_like GST_N 99.8 4.5E-20 9.8E-25 107.7 8.3 68 4-77 2-70 (71)
34 cd03061 GST_N_CLIC GST_N famil 99.8 7.6E-20 1.6E-24 111.2 8.0 70 9-84 20-89 (91)
35 cd03049 GST_N_3 GST_N family, 99.8 7.7E-20 1.7E-24 107.1 7.8 71 3-78 1-73 (73)
36 PLN02378 glutathione S-transfe 99.8 1.7E-19 3.8E-24 125.5 10.3 87 8-103 17-103 (213)
37 cd03039 GST_N_Sigma_like GST_N 99.8 3.2E-20 6.9E-25 108.5 5.6 72 3-79 1-72 (72)
38 cd03075 GST_N_Mu GST_N family, 99.8 8.9E-20 1.9E-24 109.4 7.2 75 4-81 2-82 (82)
39 TIGR02182 GRXB Glutaredoxin, G 99.8 2.1E-19 4.5E-24 124.8 9.4 96 4-110 1-97 (209)
40 cd03055 GST_N_Omega GST_N fami 99.8 2.8E-19 6.1E-24 108.7 7.7 71 2-78 18-89 (89)
41 cd03037 GST_N_GRX2 GST_N famil 99.8 2.2E-19 4.8E-24 104.6 6.9 70 3-79 1-71 (71)
42 PF13409 GST_N_2: Glutathione 99.8 6.8E-19 1.5E-23 102.5 7.7 69 10-80 1-70 (70)
43 cd03038 GST_N_etherase_LigE GS 99.8 5.3E-19 1.2E-23 106.3 7.3 70 9-82 14-84 (84)
44 PLN02817 glutathione dehydroge 99.8 1.8E-18 3.9E-23 124.1 10.4 86 9-103 71-156 (265)
45 TIGR00862 O-ClC intracellular 99.8 4.5E-18 9.7E-23 120.0 10.8 83 9-97 17-101 (236)
46 cd03077 GST_N_Alpha GST_N fami 99.8 2.3E-18 4.9E-23 102.6 7.8 71 3-82 2-77 (79)
47 cd03080 GST_N_Metaxin_like GST 99.8 2.6E-18 5.6E-23 101.3 7.6 67 3-82 2-75 (75)
48 cd03040 GST_N_mPGES2 GST_N fam 99.8 3.5E-18 7.6E-23 101.0 7.2 72 3-81 2-76 (77)
49 PTZ00057 glutathione s-transfe 99.8 1.1E-17 2.5E-22 115.6 10.5 89 3-105 5-101 (205)
50 cd03043 GST_N_1 GST_N family, 99.8 5.7E-18 1.2E-22 99.4 7.4 68 7-78 6-73 (73)
51 cd00570 GST_N_family Glutathio 99.7 3.9E-17 8.4E-22 93.5 7.5 71 3-78 1-71 (71)
52 KOG4420|consensus 99.7 1.3E-17 2.9E-22 116.9 5.7 85 3-90 27-111 (325)
53 KOG1695|consensus 99.7 1.2E-16 2.6E-21 110.3 10.2 98 1-108 1-99 (206)
54 cd03054 GST_N_Metaxin GST_N fa 99.7 4.1E-16 9E-21 91.0 6.7 65 3-80 1-72 (72)
55 PLN02907 glutamate-tRNA ligase 99.6 5.5E-15 1.2E-19 117.9 10.8 88 1-107 1-88 (722)
56 COG2999 GrxB Glutaredoxin 2 [P 99.5 2.4E-14 5.2E-19 95.5 5.8 93 3-105 1-93 (215)
57 cd03079 GST_N_Metaxin2 GST_N f 99.5 2.9E-13 6.2E-18 79.4 6.5 60 9-80 15-74 (74)
58 TIGR02190 GlrX-dom Glutaredoxi 99.3 2.3E-11 4.9E-16 72.2 6.4 71 2-78 9-79 (79)
59 PRK10638 glutaredoxin 3; Provi 99.2 1.4E-10 3E-15 69.4 6.5 73 1-78 1-74 (83)
60 KOG1422|consensus 99.1 8.6E-10 1.9E-14 75.6 8.7 71 9-85 19-89 (221)
61 cd03078 GST_N_Metaxin1_like GS 99.1 8.2E-10 1.8E-14 64.6 6.6 58 10-80 15-72 (73)
62 cd03029 GRX_hybridPRX5 Glutare 99.1 1.1E-09 2.5E-14 63.6 7.0 71 2-78 2-72 (72)
63 KOG3029|consensus 99.0 3.5E-09 7.5E-14 75.7 7.6 69 3-79 91-159 (370)
64 cd03027 GRX_DEP Glutaredoxin ( 98.9 4.2E-09 9.1E-14 61.4 5.7 68 3-75 3-70 (73)
65 PRK10329 glutaredoxin-like pro 98.9 8.6E-09 1.9E-13 61.5 5.9 60 1-66 1-60 (81)
66 cd02066 GRX_family Glutaredoxi 98.8 1.3E-08 2.8E-13 58.1 5.8 70 2-76 1-70 (72)
67 TIGR02196 GlrX_YruB Glutaredox 98.8 1.3E-08 2.8E-13 58.5 5.8 70 3-77 2-73 (74)
68 cd02976 NrdH NrdH-redoxin (Nrd 98.8 1.2E-08 2.6E-13 58.6 5.1 62 3-69 2-63 (73)
69 COG0695 GrxC Glutaredoxin and 98.7 3.5E-08 7.6E-13 58.7 5.8 72 1-76 1-73 (80)
70 TIGR02200 GlrX_actino Glutared 98.7 2.8E-08 6.2E-13 57.9 4.6 65 3-71 2-67 (77)
71 PRK11200 grxA glutaredoxin 1; 98.7 1.3E-07 2.8E-12 56.7 7.0 77 1-82 1-84 (85)
72 cd03418 GRX_GRXb_1_3_like Glut 98.7 9.6E-08 2.1E-12 55.6 5.8 71 3-78 2-73 (75)
73 TIGR02194 GlrX_NrdH Glutaredox 98.6 1.6E-07 3.5E-12 54.5 5.7 53 3-58 1-53 (72)
74 TIGR02181 GRX_bact Glutaredoxi 98.6 1.9E-07 4.2E-12 55.0 5.7 72 3-79 1-72 (79)
75 TIGR02183 GRXA Glutaredoxin, G 98.5 5.4E-07 1.2E-11 54.2 6.6 75 3-82 2-83 (86)
76 KOG4244|consensus 98.5 9.2E-07 2E-11 62.9 8.3 87 10-112 60-146 (281)
77 cd03419 GRX_GRXh_1_2_like Glut 98.5 6.5E-07 1.4E-11 52.8 5.9 74 3-79 2-76 (82)
78 PF00462 Glutaredoxin: Glutare 98.4 2.3E-07 4.9E-12 51.9 2.7 60 3-67 1-60 (60)
79 TIGR02189 GlrX-like_plant Glut 98.4 1.2E-06 2.6E-11 54.1 6.0 72 2-76 9-81 (99)
80 PHA03050 glutaredoxin; Provisi 98.3 4.4E-06 9.6E-11 52.4 6.3 70 3-75 15-88 (108)
81 TIGR02180 GRX_euk Glutaredoxin 98.2 7.7E-06 1.7E-10 48.2 6.4 74 3-79 1-77 (84)
82 PF10568 Tom37: Outer mitochon 98.1 2E-05 4.4E-10 45.8 6.1 55 10-77 13-71 (72)
83 TIGR00365 monothiol glutaredox 98.1 1.7E-05 3.7E-10 48.8 5.9 70 3-77 14-88 (97)
84 cd03028 GRX_PICOT_like Glutare 98.0 2.8E-05 6.1E-10 47.0 6.1 70 3-77 10-84 (90)
85 PRK12759 bifunctional gluaredo 97.6 0.00018 3.9E-09 55.0 6.6 69 1-75 1-79 (410)
86 KOG3027|consensus 97.5 0.00057 1.2E-08 47.4 6.7 87 10-110 33-119 (257)
87 COG1393 ArsC Arsenate reductas 97.4 0.00031 6.8E-09 44.6 4.3 34 1-34 1-34 (117)
88 cd03031 GRX_GRX_like Glutaredo 97.4 0.00065 1.4E-08 44.9 6.0 69 3-76 2-80 (147)
89 PRK10824 glutaredoxin-4; Provi 97.3 0.00088 1.9E-08 42.5 5.7 64 9-77 28-91 (115)
90 PRK01655 spxA transcriptional 97.3 0.00042 9.2E-09 44.9 4.2 32 3-34 2-33 (131)
91 cd03032 ArsC_Spx Arsenate Redu 97.3 0.00044 9.6E-09 43.7 4.2 32 3-34 2-33 (115)
92 KOG2903|consensus 97.3 0.0018 3.8E-08 46.5 7.5 107 3-111 38-187 (319)
93 cd03036 ArsC_like Arsenate Red 97.3 0.00036 7.8E-09 43.8 3.7 33 3-35 1-33 (111)
94 COG4545 Glutaredoxin-related p 97.3 0.00089 1.9E-08 39.0 4.8 66 1-68 1-77 (85)
95 PRK10026 arsenate reductase; P 97.2 0.00054 1.2E-08 45.0 4.1 34 1-34 1-35 (141)
96 cd02977 ArsC_family Arsenate R 97.2 0.00061 1.3E-08 42.2 3.9 32 3-34 1-32 (105)
97 KOG3028|consensus 97.1 0.012 2.7E-07 43.1 10.7 94 10-116 16-110 (313)
98 PRK13344 spxA transcriptional 97.1 0.0011 2.3E-08 43.1 4.3 32 3-34 2-33 (132)
99 PRK10853 putative reductase; P 97.1 0.0011 2.5E-08 42.1 4.2 32 3-34 2-33 (118)
100 PRK12559 transcriptional regul 97.0 0.0012 2.6E-08 42.7 4.1 33 3-35 2-34 (131)
101 PTZ00062 glutaredoxin; Provisi 96.9 0.0031 6.7E-08 43.9 5.9 62 9-75 126-187 (204)
102 TIGR01617 arsC_related transcr 96.9 0.0016 3.4E-08 41.2 4.0 32 3-34 1-32 (117)
103 cd03033 ArsC_15kD Arsenate Red 96.9 0.0016 3.4E-08 41.2 3.9 32 3-34 2-33 (113)
104 cd03035 ArsC_Yffb Arsenate Red 96.8 0.002 4.3E-08 40.1 3.9 32 3-34 1-32 (105)
105 cd02973 TRX_GRX_like Thioredox 96.8 0.006 1.3E-07 34.2 5.4 58 2-68 2-64 (67)
106 TIGR01616 nitro_assoc nitrogen 96.7 0.003 6.4E-08 40.7 4.1 32 3-34 3-34 (126)
107 KOG1752|consensus 96.5 0.018 3.9E-07 35.8 6.6 73 3-78 16-89 (104)
108 cd03030 GRX_SH3BGR Glutaredoxi 96.4 0.015 3.2E-07 35.4 5.7 68 3-75 2-79 (92)
109 COG0435 ECM4 Predicted glutath 96.4 0.044 9.5E-07 39.8 8.7 106 3-110 52-188 (324)
110 cd03034 ArsC_ArsC Arsenate Red 96.3 0.0066 1.4E-07 38.1 3.8 31 3-33 1-31 (112)
111 TIGR00014 arsC arsenate reduct 96.3 0.0072 1.6E-07 38.1 3.8 32 3-34 1-32 (114)
112 COG0278 Glutaredoxin-related p 96.0 0.018 4E-07 35.4 4.4 65 8-76 27-91 (105)
113 TIGR00412 redox_disulf_2 small 95.9 0.07 1.5E-06 30.9 6.7 56 1-67 1-60 (76)
114 PF05768 DUF836: Glutaredoxin- 95.4 0.065 1.4E-06 31.5 5.3 54 3-64 2-57 (81)
115 PF11287 DUF3088: Protein of u 95.3 0.049 1.1E-06 34.2 4.6 69 10-83 23-109 (112)
116 PF04908 SH3BGR: SH3-binding, 94.4 0.058 1.2E-06 33.3 3.2 68 1-73 1-83 (99)
117 PF13192 Thioredoxin_3: Thiore 94.3 0.2 4.3E-06 29.0 5.3 57 1-68 1-61 (76)
118 TIGR00411 redox_disulf_1 small 94.3 0.26 5.5E-06 28.3 5.8 52 3-58 3-58 (82)
119 PHA02125 thioredoxin-like prot 93.7 0.32 6.9E-06 27.9 5.3 49 3-57 2-50 (75)
120 PF03960 ArsC: ArsC family; I 93.6 0.09 2E-06 32.7 3.1 29 6-34 1-29 (110)
121 cd01659 TRX_superfamily Thiore 93.6 0.21 4.6E-06 26.0 4.2 55 3-58 1-58 (69)
122 cd03200 GST_C_JTV1 GST_C famil 92.7 0.096 2.1E-06 31.8 2.1 32 74-109 1-32 (96)
123 cd03026 AhpF_NTD_C TRX-GRX-lik 92.7 0.54 1.2E-05 28.2 5.4 57 3-68 16-77 (89)
124 PF09635 MetRS-N: MetRS-N bind 91.2 0.1 2.2E-06 33.3 1.0 31 53-84 35-65 (122)
125 KOG0911|consensus 78.0 4.2 9.2E-05 28.8 3.9 65 8-77 151-215 (227)
126 KOG1147|consensus 77.5 5.4 0.00012 32.1 4.6 46 61-107 42-87 (712)
127 PRK15317 alkyl hydroperoxide r 74.2 3 6.6E-05 32.9 2.6 70 3-79 120-196 (517)
128 TIGR03140 AhpF alkyl hydropero 72.0 3.2 6.8E-05 32.8 2.3 60 3-69 121-183 (515)
129 cd02953 DsbDgamma DsbD gamma f 71.9 11 0.00023 22.6 4.3 56 3-58 15-77 (104)
130 TIGR03143 AhpF_homolog putativ 71.0 13 0.00028 29.7 5.5 55 3-66 480-539 (555)
131 cd02975 PfPDO_like_N Pyrococcu 69.6 18 0.00038 22.4 4.9 51 4-58 26-80 (113)
132 PRK09266 hypothetical protein; 66.4 7.1 0.00015 28.0 2.9 62 20-84 200-261 (266)
133 TIGR02187 GlrX_arch Glutaredox 65.2 42 0.0009 23.2 6.6 52 3-58 137-191 (215)
134 PF04134 DUF393: Protein of un 65.1 29 0.00063 21.2 6.1 72 5-79 1-76 (114)
135 COG3019 Predicted metal-bindin 63.2 15 0.00032 24.3 3.6 70 3-81 28-104 (149)
136 PF01323 DSBA: DSBA-like thior 62.4 13 0.00029 24.7 3.6 35 3-37 2-41 (193)
137 cd02947 TRX_family TRX family; 61.7 26 0.00056 19.4 5.3 50 3-58 14-68 (93)
138 PHA03075 glutaredoxin-like pro 60.9 18 0.00038 23.1 3.6 34 3-36 5-38 (123)
139 cd03025 DsbA_FrnE_like DsbA fa 59.9 25 0.00054 23.4 4.6 36 1-36 1-42 (193)
140 PF04564 U-box: U-box domain; 59.4 9.6 0.00021 21.7 2.1 46 53-103 15-69 (73)
141 COG5515 Uncharacterized conser 58.5 7.6 0.00016 21.8 1.5 23 1-23 1-27 (70)
142 cd08540 SAM_PNT-ERG Sterile al 57.3 10 0.00022 22.1 2.0 22 89-110 2-25 (75)
143 cd08531 SAM_PNT-ERG_FLI-1 Ster 56.6 11 0.00024 21.9 2.0 22 89-110 2-25 (75)
144 cd08533 SAM_PNT-ETS-1,2 Steril 55.0 12 0.00026 21.6 2.0 16 95-110 9-24 (71)
145 cd02989 Phd_like_TxnDC9 Phosdu 53.3 51 0.0011 20.3 5.9 62 3-70 26-91 (113)
146 cd08542 SAM_PNT-ETS-1 Sterile 51.8 15 0.00033 22.1 2.1 24 87-110 14-39 (88)
147 cd02978 KaiB_like KaiB-like fa 51.5 46 0.001 19.2 4.1 51 3-57 4-59 (72)
148 KOG3425|consensus 51.2 64 0.0014 20.8 5.3 69 9-80 43-122 (128)
149 TIGR01295 PedC_BrcD bacterioci 50.0 62 0.0014 20.3 6.8 32 3-34 27-62 (122)
150 PF11823 DUF3343: Protein of u 49.5 29 0.00063 19.6 3.1 33 1-33 1-33 (73)
151 PF06934 CTI: Fatty acid cis/t 48.2 1.1E+02 0.0023 25.6 6.9 76 43-123 81-158 (694)
152 cd08541 SAM_PNT-FLI-1 Sterile 47.9 19 0.0004 21.9 2.1 24 87-110 12-37 (91)
153 TIGR02681 phage_pRha phage reg 47.0 19 0.00042 22.4 2.2 27 54-82 2-28 (108)
154 PF15608 PELOTA_1: PELOTA RNA 46.8 49 0.0011 20.4 3.9 29 4-32 59-87 (100)
155 cd08534 SAM_PNT-GABP-alpha Ste 46.1 22 0.00047 21.5 2.2 24 87-110 14-39 (89)
156 KOG2501|consensus 45.4 45 0.00099 22.3 3.8 67 4-70 37-132 (157)
157 COG2761 FrnE Predicted dithiol 45.2 76 0.0016 22.6 5.1 26 3-28 8-37 (225)
158 PF09314 DUF1972: Domain of un 45.0 20 0.00044 24.6 2.2 21 62-82 153-173 (185)
159 cd03021 DsbA_GSTK DsbA family, 44.7 35 0.00076 23.4 3.4 33 3-35 3-39 (209)
160 PRK10877 protein disulfide iso 44.7 76 0.0016 22.4 5.2 33 3-35 111-144 (232)
161 cd02972 DsbA_family DsbA famil 43.4 37 0.0008 19.2 3.0 22 3-24 1-22 (98)
162 cd03022 DsbA_HCCA_Iso DsbA fam 43.3 40 0.00086 22.3 3.5 32 3-34 1-36 (192)
163 cd04911 ACT_AKiii-YclM-BS_1 AC 43.1 31 0.00066 20.1 2.5 24 10-33 14-37 (76)
164 COG1102 Cmk Cytidylate kinase 42.8 39 0.00085 23.0 3.2 29 1-29 1-29 (179)
165 PF00085 Thioredoxin: Thioredo 42.4 67 0.0015 18.5 7.6 52 3-58 21-76 (103)
166 cd08532 SAM_PNT-PDEF-like Ster 42.4 25 0.00053 20.5 2.0 23 88-110 6-30 (76)
167 cd08543 SAM_PNT-ETS-2 Sterile 41.7 27 0.00058 21.1 2.1 24 87-110 14-39 (89)
168 KOG2824|consensus 41.6 35 0.00076 25.0 3.0 58 13-75 149-210 (281)
169 cd03020 DsbA_DsbC_DsbG DsbA fa 41.4 52 0.0011 22.3 3.8 31 3-33 81-113 (197)
170 cd03024 DsbA_FrnE DsbA family, 40.5 53 0.0012 22.0 3.8 34 3-36 1-42 (201)
171 COG5494 Predicted thioredoxin/ 39.1 92 0.002 22.2 4.7 58 1-66 11-69 (265)
172 cd01557 BCAT_beta_family BCAT_ 38.5 17 0.00037 26.3 1.1 60 19-81 210-273 (279)
173 PF09413 DUF2007: Domain of un 38.3 26 0.00056 19.3 1.6 30 4-33 2-31 (67)
174 cd00449 PLPDE_IV PyridoxaL 5'- 38.1 20 0.00043 25.3 1.4 57 20-79 196-254 (256)
175 TIGR01162 purE phosphoribosyla 37.9 34 0.00074 22.9 2.4 36 11-46 11-46 (156)
176 cd02949 TRX_NTR TRX domain, no 37.9 85 0.0018 18.3 5.4 52 3-58 17-72 (97)
177 PRK00625 shikimate kinase; Pro 37.9 59 0.0013 21.8 3.6 28 1-28 1-28 (173)
178 PF13728 TraF: F plasmid trans 37.8 1.4E+02 0.003 20.8 6.0 32 3-34 124-159 (215)
179 PF07511 DUF1525: Protein of u 37.8 43 0.00094 21.2 2.7 27 51-79 81-107 (114)
180 cd02984 TRX_PICOT TRX domain, 36.7 85 0.0018 18.0 5.6 52 3-58 18-73 (97)
181 cd02963 TRX_DnaJ TRX domain, D 35.7 1E+02 0.0022 18.7 5.2 52 3-58 28-84 (111)
182 COG0424 Maf Nucleotide-binding 35.2 68 0.0015 22.3 3.6 34 1-37 1-34 (193)
183 PRK06606 branched-chain amino 35.0 31 0.00067 25.3 2.0 59 20-81 228-288 (306)
184 PRK11657 dsbG disulfide isomer 34.8 58 0.0012 23.3 3.3 20 3-22 121-140 (251)
185 PRK06092 4-amino-4-deoxychoris 34.2 42 0.00092 23.9 2.6 58 20-81 208-265 (268)
186 COG2256 MGS1 ATPase related to 33.2 76 0.0017 24.8 3.8 31 2-32 50-80 (436)
187 PRK13947 shikimate kinase; Pro 33.0 73 0.0016 20.7 3.4 28 1-28 1-29 (171)
188 PRK13356 aminotransferase; Pro 32.7 35 0.00077 24.7 2.0 57 20-80 221-277 (286)
189 TIGR01764 excise DNA binding d 32.7 59 0.0013 16.0 2.4 25 51-78 24-48 (49)
190 smart00251 SAM_PNT SAM / Point 32.4 50 0.0011 19.4 2.3 24 87-110 12-37 (82)
191 PF00731 AIRC: AIR carboxylase 32.1 27 0.00059 23.2 1.2 27 11-37 13-39 (150)
192 PRK03839 putative kinase; Prov 31.4 81 0.0018 20.8 3.5 28 1-28 1-28 (180)
193 TIGR01122 ilvE_I branched-chai 30.2 41 0.00088 24.5 2.0 58 20-80 220-279 (298)
194 PF09868 DUF2095: Uncharacteri 29.8 32 0.0007 21.9 1.2 64 16-80 27-90 (128)
195 TIGR01121 D_amino_aminoT D-ami 28.2 47 0.001 23.9 2.0 62 17-81 208-271 (276)
196 PF12728 HTH_17: Helix-turn-he 28.0 94 0.002 15.8 2.9 26 51-79 24-49 (51)
197 KOG0733|consensus 28.0 90 0.002 26.1 3.6 27 3-29 548-574 (802)
198 PRK07544 branched-chain amino 27.5 50 0.0011 24.0 2.1 57 20-80 225-281 (292)
199 PF10189 DUF2356: Conserved pr 27.2 1E+02 0.0023 22.0 3.5 37 71-107 79-115 (230)
200 PF13098 Thioredoxin_2: Thiore 27.0 75 0.0016 18.9 2.5 35 3-37 9-50 (112)
201 PRK03600 nrdI ribonucleotide r 26.9 1.1E+02 0.0024 19.7 3.4 24 1-27 1-24 (134)
202 PRK07650 4-amino-4-deoxychoris 26.8 60 0.0013 23.4 2.3 57 20-79 212-269 (283)
203 PRK14532 adenylate kinase; Pro 26.8 1E+02 0.0022 20.4 3.4 28 1-28 1-28 (188)
204 PF00004 AAA: ATPase family as 26.6 1.5E+02 0.0033 17.8 3.9 28 3-30 1-28 (132)
205 COG3011 Predicted thiol-disulf 26.6 1.9E+02 0.0042 18.9 7.5 77 3-81 10-87 (137)
206 PF02198 SAM_PNT: Sterile alph 26.5 61 0.0013 19.0 1.9 24 87-110 12-37 (84)
207 TIGR03759 conj_TIGR03759 integ 26.4 1.4E+02 0.003 20.9 3.9 14 45-58 179-192 (200)
208 PRK13949 shikimate kinase; Pro 26.0 1.1E+02 0.0025 20.2 3.4 29 1-29 1-30 (169)
209 cd03004 PDI_a_ERdj5_C PDIa fam 25.6 1.5E+02 0.0032 17.3 4.2 52 3-58 23-78 (104)
210 COG3384 Aromatic ring-opening 25.3 1.8E+02 0.0038 21.4 4.4 38 44-81 123-160 (268)
211 KOG0190|consensus 25.0 3E+02 0.0065 22.1 5.9 75 3-84 46-135 (493)
212 cd02997 PDI_a_PDIR PDIa family 24.7 1.1E+02 0.0023 17.7 2.9 54 3-58 21-80 (104)
213 PRK08227 autoinducer 2 aldolas 24.3 2.2E+02 0.0049 20.7 4.8 56 16-83 163-218 (264)
214 PRK09301 circadian clock prote 24.0 1.9E+02 0.0041 18.0 4.0 51 3-57 9-64 (103)
215 PHA00159 endonuclease I 23.8 2.3E+02 0.0049 18.8 4.5 66 11-83 17-87 (148)
216 PHA02278 thioredoxin-like prot 23.8 1.8E+02 0.0039 17.6 6.6 63 3-67 18-85 (103)
217 PF09098 Dehyd-heme_bind: Quin 23.7 60 0.0013 22.0 1.7 20 63-82 47-68 (167)
218 COG0041 PurE Phosphoribosylcar 23.6 1.5E+02 0.0034 19.9 3.5 25 13-37 17-41 (162)
219 PRK06217 hypothetical protein; 23.5 1.3E+02 0.0029 19.9 3.4 28 1-28 1-29 (183)
220 TIGR02654 circ_KaiB circadian 23.2 1.8E+02 0.0039 17.4 4.0 51 3-57 6-61 (87)
221 TIGR03757 conj_TIGR03757 integ 23.2 93 0.002 19.7 2.4 28 50-79 81-108 (113)
222 PRK04182 cytidylate kinase; Pr 23.1 1.4E+02 0.0031 19.3 3.5 28 1-28 1-28 (180)
223 KOG2263|consensus 23.0 2.2E+02 0.0048 23.1 4.8 86 23-110 256-360 (765)
224 COG0703 AroK Shikimate kinase 22.7 1.4E+02 0.003 20.3 3.3 29 1-29 3-31 (172)
225 PRK07849 4-amino-4-deoxychoris 22.6 84 0.0018 22.9 2.4 58 20-81 227-284 (292)
226 TIGR02173 cyt_kin_arch cytidyl 22.5 1.5E+02 0.0032 19.0 3.5 28 1-28 1-28 (171)
227 PF05496 RuvB_N: Holliday junc 22.3 1.6E+02 0.0034 21.2 3.6 29 3-31 53-81 (233)
228 cd08535 SAM_PNT-Tel_Yan Steril 22.2 65 0.0014 18.3 1.4 17 94-110 7-23 (68)
229 PRK03731 aroL shikimate kinase 22.2 1.5E+02 0.0033 19.2 3.5 26 3-28 5-30 (171)
230 KOG0730|consensus 21.3 98 0.0021 25.8 2.7 29 3-31 471-499 (693)
231 PRK12400 D-amino acid aminotra 21.2 92 0.002 22.6 2.4 57 20-79 218-276 (290)
232 PRK09381 trxA thioredoxin; Pro 21.2 1.9E+02 0.0042 17.0 5.7 52 3-58 25-80 (109)
233 PF07728 AAA_5: AAA domain (dy 20.8 2.1E+02 0.0046 17.7 3.9 33 3-35 2-34 (139)
234 cd01558 D-AAT_like D-Alanine a 20.8 65 0.0014 22.9 1.5 44 20-66 210-253 (270)
235 COG3150 Predicted esterase [Ge 20.6 1.8E+02 0.0039 20.1 3.5 33 4-36 4-36 (191)
236 COG0462 PrsA Phosphoribosylpyr 20.5 2.5E+02 0.0054 21.1 4.5 69 7-75 168-238 (314)
237 TIGR02739 TraF type-F conjugat 20.3 1.9E+02 0.0042 21.0 3.8 33 3-35 154-190 (256)
238 PRK08118 topology modulation p 20.2 1.8E+02 0.004 19.1 3.5 28 1-28 1-29 (167)
No 1
>PLN02473 glutathione S-transferase
Probab=99.95 E-value=4.6e-27 Score=163.16 Aligned_cols=110 Identities=29% Similarity=0.353 Sum_probs=100.7
Q ss_pred CeeEEecCCCCchHHHHHHHHHHhCCCceEEEccCCCCCCCChhHhhhCCCCccceeeeecCCCeeeechHHHHHHHHHH
Q psy2059 1 MTIDFYYVPGSAPCRAVQLAAAQIGVPLNLKHTDLMKGEHLTPEFLKLNPQHTVPYSQQTNSQEYRREESRAIIAYLAEQ 80 (126)
Q Consensus 1 M~~~Ly~~~~s~~~~~v~~~l~~~gi~~~~~~v~~~~~~~~~~~~~~~~p~~~vP~L~~~~~~~~~l~eS~aI~~yL~~~ 80 (126)
|.||||+++.|++++||+++|+++|++|+.+.++..++++..++|+++||+|+||+| ++||.+|+||.||++||+++
T Consensus 1 ~~~kLy~~~~s~~~~rv~~~L~e~gi~ye~~~v~~~~~~~~~~~~~~~nP~g~vP~L---~~~g~~l~ES~aI~~YL~~~ 77 (214)
T PLN02473 1 MVVKVYGQIKAANPQRVLLCFLEKGIEFEVIHVDLDKLEQKKPEHLLRQPFGQVPAI---EDGDLKLFESRAIARYYATK 77 (214)
T ss_pred CceEEecCCCCCchHHHHHHHHHcCCCceEEEecCcccccCCHHHHhhCCCCCCCeE---EECCEEEEehHHHHHHHHHH
Confidence 678999999999999999999999999999999998888899999999999999999 88999999999999999999
Q ss_pred hCCCC-CCCCCCHHHHHHHHHHHhhhccccchhh
Q psy2059 81 YGKDD-SLYPKDPKARGIVNQRLYFDIGTLYQRF 113 (126)
Q Consensus 81 ~~~~~-~l~p~~~~~~~~~~~wl~~~~~~~~~~~ 113 (126)
+++.+ .|+|.++.+|+++++|+.+..+.+.+..
T Consensus 78 ~~~~~~~l~p~~~~~ra~~~~~~~~~~~~~~~~~ 111 (214)
T PLN02473 78 YADQGTDLLGKTLEHRAIVDQWVEVENNYFYAVA 111 (214)
T ss_pred cCCcCCCCCCCCHHHHHHHHHHHHHHHhcccHHH
Confidence 97532 4999999999999999999888776544
No 2
>PRK15113 glutathione S-transferase; Provisional
Probab=99.95 E-value=8.8e-27 Score=162.10 Aligned_cols=106 Identities=29% Similarity=0.424 Sum_probs=97.6
Q ss_pred eEEecCC--CCchHHHHHHHHHHhCCCceEEEccCCCCCCCChhHhhhCCCCccceeeeecCCCeeeechHHHHHHHHHH
Q psy2059 3 IDFYYVP--GSAPCRAVQLAAAQIGVPLNLKHTDLMKGEHLTPEFLKLNPQHTVPYSQQTNSQEYRREESRAIIAYLAEQ 80 (126)
Q Consensus 3 ~~Ly~~~--~s~~~~~v~~~l~~~gi~~~~~~v~~~~~~~~~~~~~~~~p~~~vP~L~~~~~~~~~l~eS~aI~~yL~~~ 80 (126)
++||+.+ .|++|++|+++|+++|++|+.+.+++.++++..++|+++||.|+||+| ++||..|+||.||++||+++
T Consensus 6 ~~Ly~~~~~~s~~~~rv~~~l~e~gi~~e~~~v~~~~~~~~~~~~~~~nP~g~VP~L---~~~~~~l~ES~aI~~YL~~~ 82 (214)
T PRK15113 6 ITLYSDAHFFSPYVMSAFVALQEKGLPFELKTVDLDAGEHLQPTYQGYSLTRRVPTL---QHDDFELSESSAIAEYLEER 82 (214)
T ss_pred EEEEeCCCCCCchHHHHHHHHHHcCCCCeEEEeCCCCccccCHHHHhcCCCCCCCEE---EECCEEEecHHHHHHHHHHH
Confidence 8999976 699999999999999999999999999888888999999999999999 88999999999999999999
Q ss_pred hCCCC--CCCCCCHHHHHHHHHHHhhhccccch
Q psy2059 81 YGKDD--SLYPKDPKARGIVNQRLYFDIGTLYQ 111 (126)
Q Consensus 81 ~~~~~--~l~p~~~~~~~~~~~wl~~~~~~~~~ 111 (126)
++++. .++|.++.+|+++++|+.|.++++.+
T Consensus 83 ~~~~~~~~l~p~~~~~ra~~~~~~~~~~~~~~~ 115 (214)
T PRK15113 83 FAPPAWERIYPADLQARARARQIQAWLRSDLMP 115 (214)
T ss_pred cCCCCccccCCCCHHHHHHHHHHHHHHHhhhHH
Confidence 98642 28999999999999999999877754
No 3
>PLN02395 glutathione S-transferase
Probab=99.94 E-value=2.5e-26 Score=159.46 Aligned_cols=115 Identities=30% Similarity=0.425 Sum_probs=102.5
Q ss_pred CeeEEecCCCCchHHHHHHHHHHhCCCceEEEccCCCCCCCChhHhhhCCCCccceeeeecCCCeeeechHHHHHHHHHH
Q psy2059 1 MTIDFYYVPGSAPCRAVQLAAAQIGVPLNLKHTDLMKGEHLTPEFLKLNPQHTVPYSQQTNSQEYRREESRAIIAYLAEQ 80 (126)
Q Consensus 1 M~~~Ly~~~~s~~~~~v~~~l~~~gi~~~~~~v~~~~~~~~~~~~~~~~p~~~vP~L~~~~~~~~~l~eS~aI~~yL~~~ 80 (126)
|+++||+.+.+ +++||+++|+++|++|+.+.+++..++++.++|+++||.|+||+| +++|.+|+||.||++||+++
T Consensus 1 ~~~~ly~~~~~-~~~rv~~~L~e~gl~~e~~~v~~~~~~~~~~~~~~~nP~g~vP~L---~~~~~~l~ES~aI~~YL~~~ 76 (215)
T PLN02395 1 MVLKVYGPAFA-SPKRALVTLIEKGVEFETVPVDLMKGEHKQPEYLALQPFGVVPVI---VDGDYKIFESRAIMRYYAEK 76 (215)
T ss_pred CeEEEEcCCcC-cHHHHHHHHHHcCCCceEEEeccccCCcCCHHHHhhCCCCCCCEE---EECCEEEEcHHHHHHHHHHH
Confidence 88999998776 589999999999999999999998777888999999999999999 88899999999999999999
Q ss_pred hCCC-CCCCCCCHHHHHHHHHHHhhhccccchhhHHHHHH
Q psy2059 81 YGKD-DSLYPKDPKARGIVNQRLYFDIGTLYQRFADYFVS 119 (126)
Q Consensus 81 ~~~~-~~l~p~~~~~~~~~~~wl~~~~~~~~~~~~~~~~~ 119 (126)
++.. ..|+|.++.+++++++|+.+.++.+.+.+......
T Consensus 77 ~~~~~~~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 116 (215)
T PLN02395 77 YRSQGPDLLGKTIEERGQVEQWLDVEATSYHPPLLNLTLH 116 (215)
T ss_pred cCCCCcCcCCCChhHHHHHHHHHHHHHHhcCchHHHHHHH
Confidence 9753 24999999999999999999988888776555443
No 4
>PRK09481 sspA stringent starvation protein A; Provisional
Probab=99.94 E-value=3.5e-26 Score=158.77 Aligned_cols=101 Identities=26% Similarity=0.396 Sum_probs=92.5
Q ss_pred eEEecCCCCchHHHHHHHHHHhCCCceEEEccCCCCCCCChhHhhhCCCCccceeeeecCCCeeeechHHHHHHHHHHhC
Q psy2059 3 IDFYYVPGSAPCRAVQLAAAQIGVPLNLKHTDLMKGEHLTPEFLKLNPQHTVPYSQQTNSQEYRREESRAIIAYLAEQYG 82 (126)
Q Consensus 3 ~~Ly~~~~s~~~~~v~~~l~~~gi~~~~~~v~~~~~~~~~~~~~~~~p~~~vP~L~~~~~~~~~l~eS~aI~~yL~~~~~ 82 (126)
|+||+++.|++|++|+++|+++|++|+.+.++.. ++.++|+++||.|+||+| ++||.+|+||.||++||+++++
T Consensus 11 ~~Ly~~~~s~~~~rv~~~L~e~gl~~e~~~v~~~---~~~~~~~~~nP~g~VPvL---~~~g~~l~ES~AIl~YL~~~~~ 84 (211)
T PRK09481 11 MTLFSGPTDIYSHQVRIVLAEKGVSVEIEQVEKD---NLPQDLIDLNPYQSVPTL---VDRELTLYESRIIMEYLDERFP 84 (211)
T ss_pred eEEeCCCCChhHHHHHHHHHHCCCCCEEEeCCcc---cCCHHHHHhCCCCCCCEE---EECCEEeeCHHHHHHHHHHhCC
Confidence 7999999999999999999999999999999874 467899999999999999 8999999999999999999998
Q ss_pred CCCCCCCCCHHHHHHHHHHHhhhccccc
Q psy2059 83 KDDSLYPKDPKARGIVNQRLYFDIGTLY 110 (126)
Q Consensus 83 ~~~~l~p~~~~~~~~~~~wl~~~~~~~~ 110 (126)
... |+|.++.+|+++++|+.+..+.+.
T Consensus 85 ~~~-l~p~~~~~ra~~~~~~~~~~~~~~ 111 (211)
T PRK09481 85 HPP-LMPVYPVARGESRLMMHRIEKDWY 111 (211)
T ss_pred CCC-CCCCCHHHHHHHHHHHHHHHHHHH
Confidence 765 999999999999999988765543
No 5
>KOG0867|consensus
Probab=99.94 E-value=2.6e-26 Score=161.19 Aligned_cols=116 Identities=44% Similarity=0.617 Sum_probs=107.2
Q ss_pred CeeEEecCCCCchHHHHHHHHHHhCCCceEEEccCCCCCCCChhHhhhCCCCccceeeeecCCCeeeechHHHHHHHHHH
Q psy2059 1 MTIDFYYVPGSAPCRAVQLAAAQIGVPLNLKHTDLMKGEHLTPEFLKLNPQHTVPYSQQTNSQEYRREESRAIIAYLAEQ 80 (126)
Q Consensus 1 M~~~Ly~~~~s~~~~~v~~~l~~~gi~~~~~~v~~~~~~~~~~~~~~~~p~~~vP~L~~~~~~~~~l~eS~aI~~yL~~~ 80 (126)
|.++||+++.+++|++|.++++++|++++.+.++...+++.+++|+++||.|+||+| +++|..++||.||+.||+++
T Consensus 1 ~~~~ly~~~~s~~~r~vl~~~~~~~l~~e~~~v~~~~ge~~~pefl~~nP~~kVP~l---~d~~~~l~eS~AI~~Yl~~k 77 (226)
T KOG0867|consen 1 MKLKLYGHLGSPPARAVLIAAKELGLEVELKPVDLVKGEQKSPEFLKLNPLGKVPAL---EDGGLTLWESHAILRYLAEK 77 (226)
T ss_pred CCceEeecCCCcchHHHHHHHHHcCCceeEEEeeccccccCCHHHHhcCcCCCCCeE---ecCCeEEeeHHHHHHHHHHH
Confidence 679999999999999999999999999999999999999999999999999999999 99999999999999999999
Q ss_pred hCCCC-CCCCCCHHHHHHHHHHHhhhccccchh--hHHHHHH
Q psy2059 81 YGKDD-SLYPKDPKARGIVNQRLYFDIGTLYQR--FADYFVS 119 (126)
Q Consensus 81 ~~~~~-~l~p~~~~~~~~~~~wl~~~~~~~~~~--~~~~~~~ 119 (126)
|...+ .++|.+..+|+.+++|+.|.++.+.+. ...++.+
T Consensus 78 y~~~~~~l~p~~~~~ra~v~~~l~~~~~~l~~~~~~~~~~~p 119 (226)
T KOG0867|consen 78 YGPLGGILLPKDLKERAIVDQWLEFENGVLDPVTFERPILAP 119 (226)
T ss_pred cCCCCcccCCcCHHHHHHHHHHHHhhhcccccccccceeeec
Confidence 97222 399999999999999999999999988 4455555
No 6
>PRK13972 GSH-dependent disulfide bond oxidoreductase; Provisional
Probab=99.93 E-value=1.2e-25 Score=156.43 Aligned_cols=107 Identities=28% Similarity=0.501 Sum_probs=92.9
Q ss_pred eEEecCCCCchHHHHHHHHHHhCCCceEEEccCCCCCCCChhHhhhCCCCccceeeeec--CCC--eeeechHHHHHHHH
Q psy2059 3 IDFYYVPGSAPCRAVQLAAAQIGVPLNLKHTDLMKGEHLTPEFLKLNPQHTVPYSQQTN--SQE--YRREESRAIIAYLA 78 (126)
Q Consensus 3 ~~Ly~~~~s~~~~~v~~~l~~~gi~~~~~~v~~~~~~~~~~~~~~~~p~~~vP~L~~~~--~~~--~~l~eS~aI~~yL~ 78 (126)
++||+.+ +++|++|+++|+++|++|+.+.+++..++++.++|+++||.|+||+|+++. +|| .+|+||.||++||+
T Consensus 2 ~~Ly~~~-~~~~~~v~~~L~e~gl~~e~~~v~~~~~~~~~~~~~~iNP~gkVP~L~~~~~~d~g~~~~L~ES~AI~~YL~ 80 (215)
T PRK13972 2 IDLYFAP-TPNGHKITLFLEEAELDYRLIKVDLGKGGQFRPEFLRISPNNKIPAIVDHSPADGGEPLSLFESGAILLYLA 80 (215)
T ss_pred eEEEECC-CCChHHHHHHHHHcCCCcEEEEecCcccccCCHHHHhhCcCCCCCEEEeCCCCCCCCceeEEcHHHHHHHHH
Confidence 6999988 678999999999999999999999988888899999999999999994110 245 57999999999999
Q ss_pred HHhCCCCCCCCCCHHHHHHHHHHHhhhccccchhh
Q psy2059 79 EQYGKDDSLYPKDPKARGIVNQRLYFDIGTLYQRF 113 (126)
Q Consensus 79 ~~~~~~~~l~p~~~~~~~~~~~wl~~~~~~~~~~~ 113 (126)
++++ .+.|.++.+|+++++|+.|..+.+.+.+
T Consensus 81 ~~~~---~l~p~~~~~ra~~~~~~~~~~~~~~~~~ 112 (215)
T PRK13972 81 EKTG---LFLSHETRERAATLQWLFWQVGGLGPML 112 (215)
T ss_pred HhcC---CCCCCCHHHHHHHHHHHHHHhhccCcce
Confidence 9985 2778889999999999999888777654
No 7
>COG0625 Gst Glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]
Probab=99.93 E-value=2.2e-25 Score=154.58 Aligned_cols=113 Identities=34% Similarity=0.471 Sum_probs=102.7
Q ss_pred eEEecCCCCchHHHHHHHHHHhCCCceEEEccCCCCCCCChhHhhhCCCCccceeeeecCCCe-eeechHHHHHHHHHHh
Q psy2059 3 IDFYYVPGSAPCRAVQLAAAQIGVPLNLKHTDLMKGEHLTPEFLKLNPQHTVPYSQQTNSQEY-RREESRAIIAYLAEQY 81 (126)
Q Consensus 3 ~~Ly~~~~s~~~~~v~~~l~~~gi~~~~~~v~~~~~~~~~~~~~~~~p~~~vP~L~~~~~~~~-~l~eS~aI~~yL~~~~ 81 (126)
++||+.+.||+|+||++++.++|++|+.+.+++.. ++..++|+++||.|+||+| +++|. +|+||.||++||+++|
T Consensus 1 ~~L~~~~~sp~~~kv~l~l~e~g~~ye~~~v~~~~-~~~~~~~~~~nP~gkVPvL---~~~~~~~l~ES~AI~~YL~~~~ 76 (211)
T COG0625 1 MKLYGSPTSPYSRKVRLALEEKGLPYEIVLVDLDA-EQKPPDFLALNPLGKVPAL---VDDDGEVLTESGAILEYLAERY 76 (211)
T ss_pred CeeecCCCCcchHHHHHHHHHcCCCceEEEeCccc-ccCCHHHHhcCCCCCCCEE---eeCCCCeeecHHHHHHHHHhhC
Confidence 58999999999999999999999999999999987 7788999999999999999 76554 9999999999999999
Q ss_pred CCCCCCCCCCHH---HHHHHHHHHhhhccccchhhHHHHHHH
Q psy2059 82 GKDDSLYPKDPK---ARGIVNQRLYFDIGTLYQRFADYFVST 120 (126)
Q Consensus 82 ~~~~~l~p~~~~---~~~~~~~wl~~~~~~~~~~~~~~~~~~ 120 (126)
+++. ++|.++. +|+++.+|+.+..+.+.+.+.......
T Consensus 77 ~~~~-l~p~~~~~r~~r~~~~~~~~~~~~~~~~~~~~~~~~~ 117 (211)
T COG0625 77 PGPP-LLPADPLARRARALLLWWLFFAASDLHPVIGQRRRAL 117 (211)
T ss_pred CCCC-cCCCCchhHHHHHHHHHHHHHHHhcccHHHHHHHhhh
Confidence 9877 9998774 889999999999999999887776654
No 8
>KOG0868|consensus
Probab=99.93 E-value=1.3e-25 Score=149.11 Aligned_cols=107 Identities=28% Similarity=0.323 Sum_probs=100.1
Q ss_pred eEEecCCCCchHHHHHHHHHHhCCCceEEEccCCCC-CCCChhHhhhCCCCccceeeeecCCCeeeechHHHHHHHHHHh
Q psy2059 3 IDFYYVPGSAPCRAVQLAAAQIGVPLNLKHTDLMKG-EHLTPEFLKLNPQHTVPYSQQTNSQEYRREESRAIIAYLAEQY 81 (126)
Q Consensus 3 ~~Ly~~~~s~~~~~v~~~l~~~gi~~~~~~v~~~~~-~~~~~~~~~~~p~~~vP~L~~~~~~~~~l~eS~aI~~yL~~~~ 81 (126)
.+||.+..|.+++|||++|+.+|++|+.+.|++.++ .+...+|.++||+++||+| +.||.+|+||.||+.||++.|
T Consensus 6 piLYSYWrSSCswRVRiALaLK~iDYey~PvnLlk~~~q~~~ef~~iNPm~kVP~L---~i~g~tl~eS~AII~YLeEt~ 82 (217)
T KOG0868|consen 6 PILYSYWRSSCSWRVRIALALKGIDYEYKPVNLLKEEDQSDSEFKEINPMEKVPTL---VIDGLTLTESLAIIEYLEETY 82 (217)
T ss_pred chhhhhhcccchHHHHHHHHHcCCCcceeehhhhcchhhhhhHHhhcCchhhCCeE---EECCEEeehHHHHHHHHHhcC
Confidence 679999989999999999999999999999999887 5556899999999999999 999999999999999999999
Q ss_pred CCCCCCCCCCHHHHHHHHHHHhhhccccchhh
Q psy2059 82 GKDDSLYPKDPKARGIVNQRLYFDIGTLYQRF 113 (126)
Q Consensus 82 ~~~~~l~p~~~~~~~~~~~wl~~~~~~~~~~~ 113 (126)
++++ |+|.|+..|+.+++......+.+.|.-
T Consensus 83 P~pp-LLP~d~~KRA~~r~i~~~i~sgIQPlQ 113 (217)
T KOG0868|consen 83 PDPP-LLPKDPHKRAKARAISLLIASGIQPLQ 113 (217)
T ss_pred CCCC-CCCcCHHHHHHHHHHHHHHHhCCCcch
Confidence 9988 999999999999999999988888754
No 9
>PRK10542 glutathionine S-transferase; Provisional
Probab=99.92 E-value=1.6e-24 Score=149.01 Aligned_cols=109 Identities=24% Similarity=0.348 Sum_probs=94.0
Q ss_pred eEEecCCCCchHHHHHHHHHHhCCCceEEEccCCCCC-CCChhHhhhCCCCccceeeeecCCCeeeechHHHHHHHHHHh
Q psy2059 3 IDFYYVPGSAPCRAVQLAAAQIGVPLNLKHTDLMKGE-HLTPEFLKLNPQHTVPYSQQTNSQEYRREESRAIIAYLAEQY 81 (126)
Q Consensus 3 ~~Ly~~~~s~~~~~v~~~l~~~gi~~~~~~v~~~~~~-~~~~~~~~~~p~~~vP~L~~~~~~~~~l~eS~aI~~yL~~~~ 81 (126)
|+||+.+.+ ++++++++|+++|++|+.+.+++..++ ...++|+++||.|+||+|+ .+||.+|+||.||++||++++
T Consensus 1 m~l~~~~~s-~~~~~~~~L~~~gi~~e~~~v~~~~~~~~~~~~~~~~nP~g~vPvL~--~~~g~~l~eS~aI~~YL~~~~ 77 (201)
T PRK10542 1 MKLFYKPGA-CSLASHITLRESGLDFTLVSVDLAKKRLENGDDYLAINPKGQVPALL--LDDGTLLTEGVAIMQYLADSV 77 (201)
T ss_pred CceeecccH-HHHHHHHHHHHcCCCceEEEeecccccccCChHHHHhCcCCCCCeEE--eCCCcEeecHHHHHHHHHHhC
Confidence 589999877 699999999999999999999987654 4568999999999999993 368899999999999999999
Q ss_pred CCCCCCC-CCCHHHHHHHHHHHhhhccccchhhHH
Q psy2059 82 GKDDSLY-PKDPKARGIVNQRLYFDIGTLYQRFAD 115 (126)
Q Consensus 82 ~~~~~l~-p~~~~~~~~~~~wl~~~~~~~~~~~~~ 115 (126)
+++. ++ |.++.+|+++++|+.+..+.+.+.+..
T Consensus 78 ~~~~-l~~p~~~~~ra~~~~~~~~~~~~~~~~~~~ 111 (201)
T PRK10542 78 PDRQ-LLAPVGSLSRYHTIEWLNYIATELHKGFTP 111 (201)
T ss_pred cccc-cCCCCCcHHHHHHHHHHHHHHhhhhhhhhh
Confidence 8765 55 667889999999999988877765443
No 10
>KOG0406|consensus
Probab=99.91 E-value=4.1e-24 Score=148.56 Aligned_cols=108 Identities=19% Similarity=0.178 Sum_probs=98.4
Q ss_pred eEEecCCCCchHHHHHHHHHHhCCCceEEEccCCCCCCCChhHhhhC-CCCccceeeeecCCCeeeechHHHHHHHHHHh
Q psy2059 3 IDFYYVPGSAPCRAVQLAAAQIGVPLNLKHTDLMKGEHLTPEFLKLN-PQHTVPYSQQTNSQEYRREESRAIIAYLAEQY 81 (126)
Q Consensus 3 ~~Ly~~~~s~~~~~v~~~l~~~gi~~~~~~v~~~~~~~~~~~~~~~~-p~~~vP~L~~~~~~~~~l~eS~aI~~yL~~~~ 81 (126)
.+||+...||+++|++++|++|||+|+.+..|+.. +++++++.| +.++|||| +.+|..|+||..|++||++.+
T Consensus 10 vrL~~~w~sPfa~R~~iaL~~KgI~yE~veedl~~---Ks~~ll~~np~hkKVPvL---~Hn~k~i~ESliiveYiDe~w 83 (231)
T KOG0406|consen 10 VKLLGMWFSPFAQRVRIALKLKGIPYEYVEEDLTN---KSEWLLEKNPVHKKVPVL---EHNGKPICESLIIVEYIDETW 83 (231)
T ss_pred EEEEEeecChHHHHHHHHHHhcCCceEEEecCCCC---CCHHHHHhccccccCCEE---EECCceehhhHHHHHHHHhhc
Confidence 78999999999999999999999999999999975 789999999 68999999 999999999999999999999
Q ss_pred CCCCCCCCCCHHHHHHHHHHHhhhccccchhhHHH
Q psy2059 82 GKDDSLYPKDPKARGIVNQRLYFDIGTLYQRFADY 116 (126)
Q Consensus 82 ~~~~~l~p~~~~~~~~~~~wl~~~~~~~~~~~~~~ 116 (126)
++++.++|+||.+|++++.|+++.+..+......+
T Consensus 84 ~~~~~iLP~DPy~Ra~arfwa~~id~~~~~~~~~~ 118 (231)
T KOG0406|consen 84 PSGPPILPSDPYERAQARFWAEYIDKKVFFVGRFV 118 (231)
T ss_pred cCCCCCCCCCHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 96555999999999999999999997766554443
No 11
>TIGR01262 maiA maleylacetoacetate isomerase. Maleylacetoacetate isomerase is an enzyme of tyrosine and phenylalanine catabolism. It requires glutathione and belongs by homology to the zeta family of glutathione S-transferases. The enzyme (EC 5.2.1.2) is described as active also on maleylpyruvate, and the example from a Ralstonia sp. catabolic plasmid is described as a maleylpyruvate isomerase involved in gentisate catabolism.
Probab=99.91 E-value=1.2e-23 Score=145.48 Aligned_cols=105 Identities=31% Similarity=0.396 Sum_probs=94.2
Q ss_pred EEecCCCCchHHHHHHHHHHhCCCceEEEccCCC-CCCCChhHhhhCCCCccceeeeecCCCeeeechHHHHHHHHHHhC
Q psy2059 4 DFYYVPGSAPCRAVQLAAAQIGVPLNLKHTDLMK-GEHLTPEFLKLNPQHTVPYSQQTNSQEYRREESRAIIAYLAEQYG 82 (126)
Q Consensus 4 ~Ly~~~~s~~~~~v~~~l~~~gi~~~~~~v~~~~-~~~~~~~~~~~~p~~~vP~L~~~~~~~~~l~eS~aI~~yL~~~~~ 82 (126)
+||++..|+++++||++|+++|++|+.+.++... ++++.++|+++||+|++|+| ++||.+|+||.||++||+++++
T Consensus 1 ~Ly~~~~s~~~~~v~~~l~~~gi~~~~~~v~~~~~~~~~~~~~~~~nP~g~vP~L---~~~g~~l~ES~aI~~yl~~~~~ 77 (210)
T TIGR01262 1 KLYSYWRSSCSYRVRIALALKGIDYEYVPVNLLRDGEQRSPEFLALNPQGLVPTL---DIDGEVLTQSLAIIEYLEETYP 77 (210)
T ss_pred CcccCCCCCchHHHHHHHHHCCCCceEEecccccccccCChhhhhcCCCCcCCEE---EECCEEeecHHHHHHHHHHhCC
Confidence 5899999999999999999999999999998733 45667899999999999999 8899999999999999999998
Q ss_pred CCCCCCCCCHHHHHHHHHHHhhhccccchh
Q psy2059 83 KDDSLYPKDPKARGIVNQRLYFDIGTLYQR 112 (126)
Q Consensus 83 ~~~~l~p~~~~~~~~~~~wl~~~~~~~~~~ 112 (126)
... ++|.++.+++++++|+.+.++.+.+.
T Consensus 78 ~~~-l~p~~~~~~a~~~~~~~~~~~~~~~~ 106 (210)
T TIGR01262 78 DPP-LLPADPIKRARVRALALLIACDIHPL 106 (210)
T ss_pred CCC-CCCCCHHHHHHHHHHHHHHhcccChh
Confidence 755 99999999999999999988777653
No 12
>PRK11752 putative S-transferase; Provisional
Probab=99.90 E-value=3.6e-23 Score=148.29 Aligned_cols=101 Identities=25% Similarity=0.462 Sum_probs=90.6
Q ss_pred eeEEecCCCCchHHHHHHHHHHh------CCCceEEEccCCCCCCCChhHhhhCCCCccceeeeecCC----CeeeechH
Q psy2059 2 TIDFYYVPGSAPCRAVQLAAAQI------GVPLNLKHTDLMKGEHLTPEFLKLNPQHTVPYSQQTNSQ----EYRREESR 71 (126)
Q Consensus 2 ~~~Ly~~~~s~~~~~v~~~l~~~------gi~~~~~~v~~~~~~~~~~~~~~~~p~~~vP~L~~~~~~----~~~l~eS~ 71 (126)
+|+||+.+ |++|++|+++|+|+ |++|+.+.+++..+++..++|+++||.|+||+| +++ |.+|+||.
T Consensus 44 ~~~Ly~~~-s~~~~rV~i~L~e~~~~~~~gl~ye~~~v~~~~~~~~~~e~~~iNP~GkVP~L---v~~dg~~~~~L~ES~ 119 (264)
T PRK11752 44 PLQLYSLG-TPNGQKVTIMLEELLALGVKGAEYDAWLIRIGEGDQFSSGFVEINPNSKIPAL---LDRSGNPPIRVFESG 119 (264)
T ss_pred CeEEecCC-CCchHHHHHHHHHHHhccCCCCceEEEEecCccccccCHHHHhhCCCCCCCEE---EeCCCCCCeEEEcHH
Confidence 48999976 88999999999997 999999999998888889999999999999999 543 47999999
Q ss_pred HHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHhhhcccc
Q psy2059 72 AIIAYLAEQYGKDDSLYPKDPKARGIVNQRLYFDIGTL 109 (126)
Q Consensus 72 aI~~yL~~~~~~~~~l~p~~~~~~~~~~~wl~~~~~~~ 109 (126)
||++||++++++ |+|.++.+|+++++|+.|..+.+
T Consensus 120 AIl~YL~~~~~~---L~P~~~~era~v~~wl~~~~~~~ 154 (264)
T PRK11752 120 AILLYLAEKFGA---FLPKDLAARTETLNWLFWQQGSA 154 (264)
T ss_pred HHHHHHHHhcCC---cCCCCHHHHHHHHHHHHHHhhhh
Confidence 999999999862 99999999999999999986653
No 13
>PRK10357 putative glutathione S-transferase; Provisional
Probab=99.90 E-value=6.4e-23 Score=141.22 Aligned_cols=105 Identities=16% Similarity=0.129 Sum_probs=90.5
Q ss_pred eEEecCCCCchHHHHHHHHHHhCCCceEEEccCCCCCCCChhHhhhCCCCccceeeeecCCCeeeechHHHHHHHHHHhC
Q psy2059 3 IDFYYVPGSAPCRAVQLAAAQIGVPLNLKHTDLMKGEHLTPEFLKLNPQHTVPYSQQTNSQEYRREESRAIIAYLAEQYG 82 (126)
Q Consensus 3 ~~Ly~~~~s~~~~~v~~~l~~~gi~~~~~~v~~~~~~~~~~~~~~~~p~~~vP~L~~~~~~~~~l~eS~aI~~yL~~~~~ 82 (126)
++||+.+.|+++++|+++|+++|++|+.+.++... ..+++.+.||.|+||+|+ .+||.+|+||.||++||+++++
T Consensus 1 ~~Ly~~~~s~~~~~v~~~L~~~gv~ye~~~~~~~~---~~~~~~~~nP~g~vP~L~--~~~g~~l~eS~aI~~yL~~~~~ 75 (202)
T PRK10357 1 MKLIGSYTSPFVRKISILLLEKGITFEFVNELPYN---ADNGVAQYNPLGKVPALV--TEEGECWFDSPIIAEYIELLNV 75 (202)
T ss_pred CeeecCCCCchHHHHHHHHHHcCCCCeEEecCCCC---CchhhhhcCCccCCCeEE--eCCCCeeecHHHHHHHHHHhCC
Confidence 58999999999999999999999999998887754 345677889999999993 3789999999999999999987
Q ss_pred CCCCCCCCCHHHHHHHHHHHhhhccccchhh
Q psy2059 83 KDDSLYPKDPKARGIVNQRLYFDIGTLYQRF 113 (126)
Q Consensus 83 ~~~~l~p~~~~~~~~~~~wl~~~~~~~~~~~ 113 (126)
++. |+|.++.+++++++|+.|..+.+...+
T Consensus 76 ~~~-l~p~~~~~~a~~~~~~~~~~~~~~~~~ 105 (202)
T PRK10357 76 APA-MLPRDPLAALRVRQLEALADGIMDAAL 105 (202)
T ss_pred CCC-CCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 654 999999999999999988776665443
No 14
>cd03052 GST_N_GDAP1 GST_N family, Ganglioside-induced differentiation-associated protein 1 (GDAP1) subfamily; GDAP1 was originally identified as a highly expressed gene at the differentiated stage of GD3 synthase-transfected cells. More recently, mutations in GDAP1 have been reported to cause both axonal and demyelinating autosomal-recessive Charcot-Marie-Tooth (CMT) type 4A neuropathy. CMT is characterized by slow and progressive weakness and atrophy of muscles. Sequence analysis of GDAP1 shows similarities and differences with GSTs; it appears to contain both N-terminal TRX-fold and C-terminal alpha helical domains of GSTs, however, it also contains additional C-terminal transmembrane domains unlike GSTs. GDAP1 is mainly expressed in neuronal cells and is localized in the mitochondria through its transmembrane domains. It does not exhibit GST activity using standard substrates.
Probab=99.90 E-value=2.9e-23 Score=122.03 Aligned_cols=73 Identities=27% Similarity=0.340 Sum_probs=69.1
Q ss_pred eEEecCCCCchHHHHHHHHHHhCCCceEEEccCCCCCCCChhHhhhCCCCccceeeeecCCCeeeechHHHHHHHH
Q psy2059 3 IDFYYVPGSAPCRAVQLAAAQIGVPLNLKHTDLMKGEHLTPEFLKLNPQHTVPYSQQTNSQEYRREESRAIIAYLA 78 (126)
Q Consensus 3 ~~Ly~~~~s~~~~~v~~~l~~~gi~~~~~~v~~~~~~~~~~~~~~~~p~~~vP~L~~~~~~~~~l~eS~aI~~yL~ 78 (126)
.+||+++.|++|++|+++|+++|++|+.+.++...++++.++|+++||.|+||+| ++||.+|+||.||++||+
T Consensus 1 ~~ly~~~~s~~s~rv~~~L~e~gl~~e~~~v~~~~~~~~~~~~~~inP~g~vP~L---~~~g~~l~Es~aI~~yLe 73 (73)
T cd03052 1 LVLYHWTQSFSSQKVRLVIAEKGLRCEEYDVSLPLSEHNEPWFMRLNPTGEVPVL---IHGDNIICDPTQIIDYLE 73 (73)
T ss_pred CEEecCCCCccHHHHHHHHHHcCCCCEEEEecCCcCccCCHHHHHhCcCCCCCEE---EECCEEEEcHHHHHHHhC
Confidence 4799999999999999999999999999999998877888999999999999999 889999999999999985
No 15
>cd03045 GST_N_Delta_Epsilon GST_N family, Class Delta and Epsilon subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Delta and Epsilon subfamily is made up primarily of insect GSTs, which play major roles in insecticide resistance by facilitating reductive dehydrochlorination of insecticides or conjugating them with GSH to produce water-soluble metabolites that are easily excreted. They are also implicated in protection against cellular damage by oxidative stress.
Probab=99.89 E-value=9e-23 Score=119.77 Aligned_cols=74 Identities=62% Similarity=1.005 Sum_probs=69.9
Q ss_pred eEEecCCCCchHHHHHHHHHHhCCCceEEEccCCCCCCCChhHhhhCCCCccceeeeecCCCeeeechHHHHHHHHH
Q psy2059 3 IDFYYVPGSAPCRAVQLAAAQIGVPLNLKHTDLMKGEHLTPEFLKLNPQHTVPYSQQTNSQEYRREESRAIIAYLAE 79 (126)
Q Consensus 3 ~~Ly~~~~s~~~~~v~~~l~~~gi~~~~~~v~~~~~~~~~~~~~~~~p~~~vP~L~~~~~~~~~l~eS~aI~~yL~~ 79 (126)
++||+++.|++|++++++|+++|++|+.+.+++..+++..++|++.||.|++|+| +++|..|+||.||++||++
T Consensus 1 ~~Ly~~~~~~~~~~v~~~l~~~gi~~e~~~i~~~~~~~~~~~~~~~~p~~~vP~l---~~~~~~l~es~aI~~yL~~ 74 (74)
T cd03045 1 IDLYYLPGSPPCRAVLLTAKALGLELNLKEVNLMKGEHLKPEFLKLNPQHTVPTL---VDNGFVLWESHAILIYLVE 74 (74)
T ss_pred CEEEeCCCCCcHHHHHHHHHHcCCCCEEEEecCccCCcCCHHHHhhCcCCCCCEE---EECCEEEEcHHHHHHHHhC
Confidence 5899999999999999999999999999999988777788999999999999999 8889999999999999974
No 16
>cd03048 GST_N_Ure2p_like GST_N family, Ure2p-like subfamily; composed of the Saccharomyces cerevisiae Ure2p and related GSTs. Ure2p is a regulator for nitrogen catabolism in yeast. It represses the expression of several gene products involved in the use of poor nitrogen sources when rich sources are available. A transmissible conformational change of Ure2p results in a prion called [Ure3], an inactive, self-propagating and infectious amyloid. Ure2p displays a GST fold containing an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The N-terminal TRX-fold domain is sufficient to induce the [Ure3] phenotype and is also called the prion domain of Ure2p. In addition to its role in nitrogen regulation, Ure2p confers protection to cells against heavy metal ion and oxidant toxicity, and shows glutathione (GSH) peroxidase activity. Characterized GSTs in this subfamily include Aspergillus fumigatus GSTs 1 and 2, and
Probab=99.88 E-value=3.1e-22 Score=119.62 Aligned_cols=76 Identities=34% Similarity=0.554 Sum_probs=70.4
Q ss_pred eEEecCCCCchHHHHHHHHHHhCCCceEEEccCCCCCCCChhHhhhCCCCccceeeeecCC---CeeeechHHHHHHHHH
Q psy2059 3 IDFYYVPGSAPCRAVQLAAAQIGVPLNLKHTDLMKGEHLTPEFLKLNPQHTVPYSQQTNSQ---EYRREESRAIIAYLAE 79 (126)
Q Consensus 3 ~~Ly~~~~s~~~~~v~~~l~~~gi~~~~~~v~~~~~~~~~~~~~~~~p~~~vP~L~~~~~~---~~~l~eS~aI~~yL~~ 79 (126)
++||+++. ++|++++++|+++|++|+.+.+++..++++.++|+++||.|++|+| +++ |..|+||.||++||++
T Consensus 2 ~~Ly~~~~-~~~~~v~~~l~~~gl~~~~~~~~~~~~~~~~~~~~~~~p~~~vP~l---~~~~~~g~~l~eS~aI~~yL~~ 77 (81)
T cd03048 2 ITLYTHGT-PNGFKVSIMLEELGLPYEIHPVDISKGEQKKPEFLKINPNGRIPAI---VDHNGTPLTVFESGAILLYLAE 77 (81)
T ss_pred eEEEeCCC-CChHHHHHHHHHcCCCcEEEEecCcCCcccCHHHHHhCcCCCCCEE---EeCCCCceEEEcHHHHHHHHHH
Confidence 69999996 8999999999999999999999987777788999999999999999 665 8999999999999999
Q ss_pred HhC
Q psy2059 80 QYG 82 (126)
Q Consensus 80 ~~~ 82 (126)
+++
T Consensus 78 ~~~ 80 (81)
T cd03048 78 KYD 80 (81)
T ss_pred HhC
Confidence 886
No 17
>cd03050 GST_N_Theta GST_N family, Class Theta subfamily; composed of eukaryotic class Theta GSTs and bacterial dichloromethane (DCM) dehalogenase. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Mammalian class Theta GSTs show poor GSH conjugating activity towards the standard substrates, CDNB and ethacrynic acid, differentiating them from other mammalian GSTs. GSTT1-1 shows similar cataytic activity as bacterial DCM dehalogenase, catalyzing the GSH-dependent hydrolytic dehalogenation of dihalomethanes. This is an essential process in methylotrophic bacteria to enable them to use chloromethane and DC
Probab=99.88 E-value=2.9e-22 Score=118.36 Aligned_cols=76 Identities=39% Similarity=0.577 Sum_probs=71.0
Q ss_pred eEEecCCCCchHHHHHHHHHHhCCCceEEEccCCCCCCCChhHhhhCCCCccceeeeecCCCeeeechHHHHHHHHHHh
Q psy2059 3 IDFYYVPGSAPCRAVQLAAAQIGVPLNLKHTDLMKGEHLTPEFLKLNPQHTVPYSQQTNSQEYRREESRAIIAYLAEQY 81 (126)
Q Consensus 3 ~~Ly~~~~s~~~~~v~~~l~~~gi~~~~~~v~~~~~~~~~~~~~~~~p~~~vP~L~~~~~~~~~l~eS~aI~~yL~~~~ 81 (126)
++||+++.|++|++++++|+++|++|+.+.++...+++..++|.+.||.|++|+| +++|..++||.||++||+++|
T Consensus 1 ~~ly~~~~s~~~~~v~~~l~~~g~~~~~~~v~~~~~~~~~~~~~~~~p~~~vP~L---~~~~~~l~eS~aI~~Yl~~~~ 76 (76)
T cd03050 1 LKLYYDLMSQPSRAVYIFLKLNKIPFEECPIDLRKGEQLTPEFKKINPFGKVPAI---VDGDFTLAESVAILRYLARKF 76 (76)
T ss_pred CEEeeCCCChhHHHHHHHHHHcCCCcEEEEecCCCCCcCCHHHHHhCcCCCCCEE---EECCEEEEcHHHHHHHHHhhC
Confidence 5899999999999999999999999999999988777777899999999999999 888999999999999999864
No 18
>PF13417 GST_N_3: Glutathione S-transferase, N-terminal domain; PDB: 3ERG_B 3IBH_A 3ERF_A 3UBL_A 3UBK_A 3IR4_A 3M8N_B 2R4V_A 2PER_A 2R5G_A ....
Probab=99.87 E-value=4.5e-22 Score=117.43 Aligned_cols=74 Identities=39% Similarity=0.565 Sum_probs=69.2
Q ss_pred EecCCCCchHHHHHHHHHHhCCCceEEEccCCCCCCCChhHhhhCCCCccceeeeecCCCeeeechHHHHHHHHHHhCCC
Q psy2059 5 FYYVPGSAPCRAVQLAAAQIGVPLNLKHTDLMKGEHLTPEFLKLNPQHTVPYSQQTNSQEYRREESRAIIAYLAEQYGKD 84 (126)
Q Consensus 5 Ly~~~~s~~~~~v~~~l~~~gi~~~~~~v~~~~~~~~~~~~~~~~p~~~vP~L~~~~~~~~~l~eS~aI~~yL~~~~~~~ 84 (126)
||+++.||+|+|+|++|+++|++|+.+.++... +.+++.+.||.|+||+| ++||..++||.+|++||+++|+++
T Consensus 1 Ly~~~~Sp~~~kv~~~l~~~~i~~~~~~v~~~~---~~~~~~~~~p~~~vPvL---~~~g~~l~dS~~I~~yL~~~~~~~ 74 (75)
T PF13417_consen 1 LYGFPGSPYSQKVRLALEEKGIPYELVPVDPEE---KRPEFLKLNPKGKVPVL---VDDGEVLTDSAAIIEYLEERYPGP 74 (75)
T ss_dssp EEEETTSHHHHHHHHHHHHHTEEEEEEEEBTTS---TSHHHHHHSTTSBSSEE---EETTEEEESHHHHHHHHHHHSTSS
T ss_pred CCCcCCChHHHHHHHHHHHcCCeEEEeccCccc---chhHHHhhcccccceEE---EECCEEEeCHHHHHHHHHHHcCCC
Confidence 799999999999999999999999999998764 47899999999999999 888999999999999999999864
No 19
>cd03053 GST_N_Phi GST_N family, Class Phi subfamily; composed of plant-specific class Phi GSTs and related fungal and bacterial proteins. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Phi GST subfamily has experience extensive gene duplication. The Arabidopsis and Oryza genomes contain 13 and 16 Phi GSTs, respectively. They are primarily responsible for herbicide detoxification together with class Tau GSTs, showing class specificity in substrate preference. Phi enzymes are highly reactive toward chloroacetanilide and thiocarbamate herbicides. Some Phi GSTs have other functions including t
Probab=99.87 E-value=8.2e-22 Score=116.27 Aligned_cols=74 Identities=39% Similarity=0.507 Sum_probs=69.5
Q ss_pred eEEecCCCCchHHHHHHHHHHhCCCceEEEccCCCCCCCChhHhhhCCCCccceeeeecCCCeeeechHHHHHHHHH
Q psy2059 3 IDFYYVPGSAPCRAVQLAAAQIGVPLNLKHTDLMKGEHLTPEFLKLNPQHTVPYSQQTNSQEYRREESRAIIAYLAE 79 (126)
Q Consensus 3 ~~Ly~~~~s~~~~~v~~~l~~~gi~~~~~~v~~~~~~~~~~~~~~~~p~~~vP~L~~~~~~~~~l~eS~aI~~yL~~ 79 (126)
++||+++.|++|+++|++|+++|++|+.+.++...++++.++|.++||.|++|+| +++|..++||.||++||++
T Consensus 2 ~~Ly~~~~s~~s~~v~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~P~~~vP~l---~~~g~~l~es~aI~~yL~~ 75 (76)
T cd03053 2 LKLYGAAMSTCVRRVLLCLEEKGVDYELVPVDLTKGEHKSPEHLARNPFGQIPAL---EDGDLKLFESRAITRYLAE 75 (76)
T ss_pred eEEEeCCCChhHHHHHHHHHHcCCCcEEEEeCccccccCCHHHHhhCCCCCCCEE---EECCEEEEcHHHHHHHHhh
Confidence 6899999999999999999999999999999987666778899999999999999 8889999999999999986
No 20
>cd03057 GST_N_Beta GST_N family, Class Beta subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Unlike mammalian GSTs which detoxify a broad range of compounds, the bacterial class Beta GSTs exhibit limited GSH conjugating activity with a narrow range of substrates. In addition to GSH conjugation, they also bind antibiotics and reduce the antimicrobial activity of beta-lactam drugs. The structure of the Proteus mirabilis enzyme reveals that the cysteine in the active site forms a covalent bond with GSH.
Probab=99.86 E-value=1.7e-21 Score=115.26 Aligned_cols=76 Identities=30% Similarity=0.496 Sum_probs=69.3
Q ss_pred eEEecCCCCchHHHHHHHHHHhCCCceEEEccCCCCCCCChhHhhhCCCCccceeeeecCC-CeeeechHHHHHHHHHHh
Q psy2059 3 IDFYYVPGSAPCRAVQLAAAQIGVPLNLKHTDLMKGEHLTPEFLKLNPQHTVPYSQQTNSQ-EYRREESRAIIAYLAEQY 81 (126)
Q Consensus 3 ~~Ly~~~~s~~~~~v~~~l~~~gi~~~~~~v~~~~~~~~~~~~~~~~p~~~vP~L~~~~~~-~~~l~eS~aI~~yL~~~~ 81 (126)
++||+++.+ ++++||++|+++|++|+.+.++..+++++.++|+++||.|++|+| +++ |..++||.||++||+++|
T Consensus 1 ~~Ly~~~~~-~~~~v~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~np~~~vP~l---~~~~g~~l~eS~aI~~yL~~~~ 76 (77)
T cd03057 1 MKLYYSPGA-CSLAPHIALEELGLPFELVRVDLRTKTQKGADYLAINPKGQVPAL---VLDDGEVLTESAAILQYLADLH 76 (77)
T ss_pred CEEEeCCCC-chHHHHHHHHHcCCCceEEEEecccCccCCHhHHHhCCCCCCCEE---EECCCcEEEcHHHHHHHHHHhC
Confidence 589999976 589999999999999999999988777888999999999999999 654 899999999999999987
Q ss_pred C
Q psy2059 82 G 82 (126)
Q Consensus 82 ~ 82 (126)
+
T Consensus 77 p 77 (77)
T cd03057 77 P 77 (77)
T ss_pred c
Confidence 4
No 21
>cd03041 GST_N_2GST_N GST_N family, 2 repeats of the N-terminal domain of soluble GSTs (2 GST_N) subfamily; composed of uncharacterized proteins. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=99.86 E-value=1.1e-21 Score=116.35 Aligned_cols=74 Identities=27% Similarity=0.416 Sum_probs=65.6
Q ss_pred eEEecCCCCchHHHHHHHHHHhCCCceEEEccCCCCCCCChhHhhhCCCCccceeeeecC--CCeeeechHHHHHHHHHH
Q psy2059 3 IDFYYVPGSAPCRAVQLAAAQIGVPLNLKHTDLMKGEHLTPEFLKLNPQHTVPYSQQTNS--QEYRREESRAIIAYLAEQ 80 (126)
Q Consensus 3 ~~Ly~~~~s~~~~~v~~~l~~~gi~~~~~~v~~~~~~~~~~~~~~~~p~~~vP~L~~~~~--~~~~l~eS~aI~~yL~~~ 80 (126)
++||+++.||+|+||+++|+++|++|+.+.++ .+++..+++++.||.|+||+| ++ +|..++||.+|++||+++
T Consensus 2 ~~Ly~~~~sp~~~kv~~~L~~~gi~y~~~~v~--~~~~~~~~~~~~~p~~~vP~l---~~~~~~~~l~es~~I~~yL~~~ 76 (77)
T cd03041 2 LELYEFEGSPFCRLVREVLTELELDVILYPCP--KGSPKRDKFLEKGGKVQVPYL---VDPNTGVQMFESADIVKYLFKT 76 (77)
T ss_pred ceEecCCCCchHHHHHHHHHHcCCcEEEEECC--CChHHHHHHHHhCCCCcccEE---EeCCCCeEEEcHHHHHHHHHHh
Confidence 79999999999999999999999999998774 334456889999999999999 54 478999999999999987
Q ss_pred h
Q psy2059 81 Y 81 (126)
Q Consensus 81 ~ 81 (126)
|
T Consensus 77 ~ 77 (77)
T cd03041 77 Y 77 (77)
T ss_pred C
Confidence 4
No 22
>cd03056 GST_N_4 GST_N family, unknown subfamily 4; composed of uncharacterized bacterial proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=99.86 E-value=1.6e-21 Score=113.98 Aligned_cols=73 Identities=41% Similarity=0.639 Sum_probs=68.5
Q ss_pred eEEecCCCCchHHHHHHHHHHhCCCceEEEccCCCCCCCChhHhhhCCCCccceeeeecCCCeeeechHHHHHHHH
Q psy2059 3 IDFYYVPGSAPCRAVQLAAAQIGVPLNLKHTDLMKGEHLTPEFLKLNPQHTVPYSQQTNSQEYRREESRAIIAYLA 78 (126)
Q Consensus 3 ~~Ly~~~~s~~~~~v~~~l~~~gi~~~~~~v~~~~~~~~~~~~~~~~p~~~vP~L~~~~~~~~~l~eS~aI~~yL~ 78 (126)
++||+++.|++|++++++|+++|++|+.+.++...++++.++|.++||.|++|+| +++|..++||.||++||+
T Consensus 1 ~~Ly~~~~~~~~~~v~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~p~~~vP~l---~~~~~~i~es~aI~~yl~ 73 (73)
T cd03056 1 MKLYGFPLSGNCYKVRLLLALLGIPYEWVEVDILKGETRTPEFLALNPNGEVPVL---ELDGRVLAESNAILVYLA 73 (73)
T ss_pred CEEEeCCCCccHHHHHHHHHHcCCCcEEEEecCCCcccCCHHHHHhCCCCCCCEE---EECCEEEEcHHHHHHHhC
Confidence 5899999999999999999999999999999987777788999999999999999 888999999999999984
No 23
>cd03047 GST_N_2 GST_N family, unknown subfamily 2; composed of uncharacterized bacterial proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The sequence from Burkholderia cepacia was identified as part of a gene cluster involved in the degradation of 2,4,5-trichlorophenoxyacetic acid. Some GSTs (e.g. Class Zeta and Delta) are known to catalyze dechlorination reactions.
Probab=99.86 E-value=1.5e-21 Score=114.45 Aligned_cols=73 Identities=29% Similarity=0.388 Sum_probs=67.8
Q ss_pred eEEecCCCCchHHHHHHHHHHhCCCceEEEccCCCCCCCChhHhhhCCCCccceeeeecCCCeeeechHHHHHHHH
Q psy2059 3 IDFYYVPGSAPCRAVQLAAAQIGVPLNLKHTDLMKGEHLTPEFLKLNPQHTVPYSQQTNSQEYRREESRAIIAYLA 78 (126)
Q Consensus 3 ~~Ly~~~~s~~~~~v~~~l~~~gi~~~~~~v~~~~~~~~~~~~~~~~p~~~vP~L~~~~~~~~~l~eS~aI~~yL~ 78 (126)
++||+++.|+++++++++|+++|++|+.+.++...+++..++|+++||.|++|+| +++|..|+||.||++||+
T Consensus 1 ~~l~~~~~s~~~~~v~~~L~~~~l~~~~~~~~~~~~~~~~~~~~~~nP~~~vP~L---~~~~~~l~eS~aI~~YL~ 73 (73)
T cd03047 1 LTIWGRRSSINVQKVLWLLDELGLPYERIDAGGQFGGLDTPEFLAMNPNGRVPVL---EDGDFVLWESNAILRYLA 73 (73)
T ss_pred CEEEecCCCcchHHHHHHHHHcCCCCEEEEeccccccccCHHHHhhCCCCCCCEE---EECCEEEECHHHHHHHhC
Confidence 5899999999999999999999999999998876666778999999999999999 889999999999999984
No 24
>cd03051 GST_N_GTT2_like GST_N family, Saccharomyces cerevisiae GTT2-like subfamily; composed of predominantly uncharacterized proteins with similarity to the S. cerevisiae GST protein, GTT2. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GTT2, a homodimer, exhibits GST activity with standard substrates. Strains with deleted GTT2 genes are viable but exhibit increased sensitivity to heat shock.
Probab=99.86 E-value=1.8e-21 Score=113.85 Aligned_cols=74 Identities=35% Similarity=0.480 Sum_probs=67.7
Q ss_pred eEEecCCCCchHHHHHHHHHHhCCCceEEEccCCCCCCCChhHhhhCCCCccceeeeecCCCeeeechHHHHHHHH
Q psy2059 3 IDFYYVPGSAPCRAVQLAAAQIGVPLNLKHTDLMKGEHLTPEFLKLNPQHTVPYSQQTNSQEYRREESRAIIAYLA 78 (126)
Q Consensus 3 ~~Ly~~~~s~~~~~v~~~l~~~gi~~~~~~v~~~~~~~~~~~~~~~~p~~~vP~L~~~~~~~~~l~eS~aI~~yL~ 78 (126)
++||+.+.|++|+++|++|+++|++|+.+.++...+++..++|.+.||.+++|+|+ .+||..++||.||++||+
T Consensus 1 ~~Ly~~~~s~~~~~~~~~L~~~~l~~~~~~v~~~~~~~~~~~~~~~~p~~~vP~l~--~~~~~~l~es~aI~~yLe 74 (74)
T cd03051 1 MKLYDSPTAPNPRRVRIFLAEKGIDVPLVTVDLAAGEQRSPEFLAKNPAGTVPVLE--LDDGTVITESVAICRYLE 74 (74)
T ss_pred CEEEeCCCCcchHHHHHHHHHcCCCceEEEeecccCccCCHHHHhhCCCCCCCEEE--eCCCCEEecHHHHHHHhC
Confidence 58999999999999999999999999999999876666788999999999999993 368899999999999985
No 25
>cd03059 GST_N_SspA GST_N family, Stringent starvation protein A (SspA) subfamily; SspA is a RNA polymerase (RNAP)-associated protein required for the lytic development of phage P1 and for stationary phase-induced acid tolerance of E. coli. It is implicated in survival during nutrient starvation. SspA adopts the GST fold with an N-terminal TRX-fold domain and a C-terminal alpha helical domain, but it does not bind glutathione (GSH) and lacks GST activity. SspA is highly conserved among gram-negative bacteria. Related proteins found in Neisseria (called RegF), Francisella and Vibrio regulate the expression of virulence factors necessary for pathogenesis.
Probab=99.86 E-value=2.4e-21 Score=113.33 Aligned_cols=73 Identities=27% Similarity=0.426 Sum_probs=67.6
Q ss_pred eEEecCCCCchHHHHHHHHHHhCCCceEEEccCCCCCCCChhHhhhCCCCccceeeeecCCCeeeechHHHHHHHHHHh
Q psy2059 3 IDFYYVPGSAPCRAVQLAAAQIGVPLNLKHTDLMKGEHLTPEFLKLNPQHTVPYSQQTNSQEYRREESRAIIAYLAEQY 81 (126)
Q Consensus 3 ~~Ly~~~~s~~~~~v~~~l~~~gi~~~~~~v~~~~~~~~~~~~~~~~p~~~vP~L~~~~~~~~~l~eS~aI~~yL~~~~ 81 (126)
|+||+.+.|++|++++++|+++|++|+.+.++.. ++.++|++.||.|++|+| +++|..++||.||++||+++|
T Consensus 1 ~~ly~~~~~~~~~~v~~~l~~~gi~~~~~~v~~~---~~~~~~~~~~p~~~vP~l---~~~~~~l~es~aI~~yL~~~~ 73 (73)
T cd03059 1 MTLYSGPDDVYSHRVRIVLAEKGVSVEIIDVDPD---NPPEDLAELNPYGTVPTL---VDRDLVLYESRIIMEYLDERF 73 (73)
T ss_pred CEEEECCCChhHHHHHHHHHHcCCccEEEEcCCC---CCCHHHHhhCCCCCCCEE---EECCEEEEcHHHHHHHHHhhC
Confidence 6899999999999999999999999999998865 467899999999999999 888899999999999999864
No 26
>cd03044 GST_N_EF1Bgamma GST_N family, Gamma subunit of Elongation Factor 1B (EFB1gamma) subfamily; EF1Bgamma is part of the eukaryotic translation elongation factor-1 (EF1) complex which plays a central role in the elongation cycle during protein biosynthesis. EF1 consists of two functionally distinct units, EF1A and EF1B. EF1A catalyzes the GTP-dependent binding of aminoacyl-tRNA to the ribosomal A site concomitant with the hydrolysis of GTP. The resulting inactive EF1A:GDP complex is recycled to the active GTP form by the guanine-nucleotide exchange factor EF1B, a complex composed of at least two subunits, alpha and gamma. Metazoan EFB1 contain a third subunit, beta. The EF1B gamma subunit contains a GST fold consisting of an N-terminal TRX-fold domain and a C-terminal alpha helical domain. The GST-like domain of EF1Bgamma is believed to mediate the dimerization of the EF1 complex, which in yeast is a dimer of the heterotrimer EF1A:EF1Balpha:EF1Bgamma. In addition to its role in prot
Probab=99.86 E-value=3e-21 Score=113.87 Aligned_cols=73 Identities=30% Similarity=0.343 Sum_probs=67.3
Q ss_pred eEEecCCCCchHHHHHHHHHHhCCCceEEEccCCCCCCCChhHhhhCCCCccceeeeecC-CCeeeechHHHHHHHHH
Q psy2059 3 IDFYYVPGSAPCRAVQLAAAQIGVPLNLKHTDLMKGEHLTPEFLKLNPQHTVPYSQQTNS-QEYRREESRAIIAYLAE 79 (126)
Q Consensus 3 ~~Ly~~~~s~~~~~v~~~l~~~gi~~~~~~v~~~~~~~~~~~~~~~~p~~~vP~L~~~~~-~~~~l~eS~aI~~yL~~ 79 (126)
.+||+++.|++|++++++|+++|++|+.+.++..++ ++.++|+++||.|++|+| +. +|..|+||.||++||++
T Consensus 1 ~~Ly~~~~~~~~~~~~~~l~~~gi~~~~~~v~~~~~-~~~~~~~~~nP~~~vP~L---~~~~g~~l~es~aI~~yL~~ 74 (75)
T cd03044 1 GTLYTYPGNPRSLKILAAAKYNGLDVEIVDFQPGKE-NKTPEFLKKFPLGKVPAF---EGADGFCLFESNAIAYYVAN 74 (75)
T ss_pred CeEecCCCCccHHHHHHHHHHcCCceEEEecccccc-cCCHHHHHhCCCCCCCEE---EcCCCCEEeeHHHHHHHHhh
Confidence 379999999999999999999999999999998754 778999999999999999 64 68999999999999986
No 27
>PF02798 GST_N: Glutathione S-transferase, N-terminal domain; InterPro: IPR004045 In eukaryotes, glutathione S-transferases (GSTs) participate in the detoxification of reactive electrophillic compounds by catalysing their conjugation to glutathione. The GST domain is also found in S-crystallins from squid, and proteins with no known GST activity, such as eukaryotic elongation factors 1-gamma and the HSP26 family of stress-related proteins, which include auxin-regulated proteins in plants and stringent starvation proteins in Escherichia coli. The major lens polypeptide of Cephalopoda is also a GST [, , , ]. Bacterial GSTs of known function often have a specific, growth-supporting role in biodegradative metabolism: epoxide ring opening and tetrachlorohydroquinone reductive dehalogenation are two examples of the reactions catalysed by these bacterial GSTs. Some regulatory proteins, like the stringent starvation proteins, also belong to the GST family [, ]. GST seems to be absent from Archaea in which gamma-glutamylcysteine substitute to glutathione as major thiol. Soluble GSTs activate glutathione (GSH) to GS-. In many GSTs, this is accomplished by a Tyr at H-bonding distance from the sulphur of GSH. These enzymes catalyse nucleophilic attack by reduced glutathione (GSH) on nonpolar compounds that contain an electrophillic carbon, nitrogen, or sulphur atom []. Glutathione S-transferases form homodimers, but in eukaryotes can also form heterodimers of the A1 and A2 or YC1 and YC2 subunits. The homodimeric enzymes display a conserved structural fold, with each monomer composed of two distinct domains []. The N-terminal domain forms a thioredoxin-like fold that binds the glutathione moiety, while the C-terminal domain contains several hydrophobic alpha-helices that specifically bind hydrophobic substrates. This entry represents the N-terminal domain of GST.; GO: 0005515 protein binding; PDB: 2VCT_H 2WJU_B 4ACS_A 1BYE_D 1AXD_B 2VCV_P 1TDI_A 1JLV_D 1Y6E_A 1U88_B ....
Probab=99.85 E-value=2.6e-21 Score=114.50 Aligned_cols=74 Identities=38% Similarity=0.570 Sum_probs=66.2
Q ss_pred CeeEEecCCCCchHHHHHHHHHHhCCCceEEEccCCCCCCCChhHhhhCCC-CccceeeeecCC-CeeeechHHHHHHHH
Q psy2059 1 MTIDFYYVPGSAPCRAVQLAAAQIGVPLNLKHTDLMKGEHLTPEFLKLNPQ-HTVPYSQQTNSQ-EYRREESRAIIAYLA 78 (126)
Q Consensus 1 M~~~Ly~~~~s~~~~~v~~~l~~~gi~~~~~~v~~~~~~~~~~~~~~~~p~-~~vP~L~~~~~~-~~~l~eS~aI~~yL~ 78 (126)
|++++|+.+. +++++|++|+++|++|+.+.+++..++++.++|.+.||. |++|+| +++ |..++||.||++||+
T Consensus 1 ~~l~l~~~~~--~~~~~r~~l~~~gv~~e~~~v~~~~~~~~~~e~~~~~p~~g~vP~l---~~~~~~~l~es~AI~~YLa 75 (76)
T PF02798_consen 1 MTLTLYNGRG--RSERIRLLLAEKGVEYEDVRVDFEKGEHKSPEFLAINPMFGKVPAL---EDGDGFVLTESNAILRYLA 75 (76)
T ss_dssp EEEEEESSST--TTHHHHHHHHHTT--EEEEEEETTTTGGGSHHHHHHTTTSSSSSEE---EETTTEEEESHHHHHHHHH
T ss_pred CEEEEECCCC--chHHHHHHHHHhcccCceEEEecccccccchhhhhcccccceeeEE---EECCCCEEEcHHHHHHHhC
Confidence 5677777776 799999999999999999999998888888999999999 999999 777 999999999999998
Q ss_pred H
Q psy2059 79 E 79 (126)
Q Consensus 79 ~ 79 (126)
+
T Consensus 76 ~ 76 (76)
T PF02798_consen 76 R 76 (76)
T ss_dssp H
T ss_pred C
Confidence 5
No 28
>cd03046 GST_N_GTT1_like GST_N family, Saccharomyces cerevisiae GTT1-like subfamily; composed of predominantly uncharacterized proteins with similarity to the S. cerevisiae GST protein, GTT1, and the Schizosaccharomyces pombe GST-III. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GTT1, a homodimer, exhibits GST activity with standard substrates and associates with the endoplasmic reticulum. Its expression is induced after diauxic shift and remains high throughout the stationary phase. S. pomb
Probab=99.85 E-value=5.7e-21 Score=112.54 Aligned_cols=76 Identities=37% Similarity=0.559 Sum_probs=69.7
Q ss_pred eEEecCCCCchHHHHHHHHHHhCCCceEEEccCCCCCCCChhHhhhCCCCccceeeeecCCCeeeechHHHHHHHHHHhC
Q psy2059 3 IDFYYVPGSAPCRAVQLAAAQIGVPLNLKHTDLMKGEHLTPEFLKLNPQHTVPYSQQTNSQEYRREESRAIIAYLAEQYG 82 (126)
Q Consensus 3 ~~Ly~~~~s~~~~~v~~~l~~~gi~~~~~~v~~~~~~~~~~~~~~~~p~~~vP~L~~~~~~~~~l~eS~aI~~yL~~~~~ 82 (126)
++||+++.+ ++++++++|+++|++|+.+.++...+.++.++|++.||.+++|+| +++|..++||.||++||+++|+
T Consensus 1 ~~l~~~~~~-~~~~v~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~p~~~vP~l---~~~g~~l~es~aI~~yL~~~~~ 76 (76)
T cd03046 1 ITLYHLPRS-RSFRILWLLEELGLPYELVLYDRGPGEQAPPEYLAINPLGKVPVL---VDGDLVLTESAAIILYLAEKYG 76 (76)
T ss_pred CEEEeCCCC-ChHHHHHHHHHcCCCcEEEEeCCCCCccCCHHHHhcCCCCCCCEE---EECCEEEEcHHHHHHHHHHhCc
Confidence 589999864 799999999999999999999987667788999999999999999 8899999999999999999864
No 29
>cd03058 GST_N_Tau GST_N family, Class Tau subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The plant-specific class Tau GST subfamily has undergone extensive gene duplication. The Arabidopsis and Oryza genomes contain 28 and 40 Tau GSTs, respectively. They are primarily responsible for herbicide detoxification together with class Phi GSTs, showing class specificity in substrate preference. Tau enzymes are highly efficient in detoxifying diphenylether and aryloxyphenoxypropionate herbicides. In addition, Tau GSTs play important roles in intracellular signalling, biosynthesis of anthocyanin,
Probab=99.85 E-value=7e-21 Score=111.87 Aligned_cols=73 Identities=25% Similarity=0.266 Sum_probs=66.6
Q ss_pred eEEecCCCCchHHHHHHHHHHhCCCceEEEccCCCCCCCChhHhhhCCC-CccceeeeecCCCeeeechHHHHHHHHHHh
Q psy2059 3 IDFYYVPGSAPCRAVQLAAAQIGVPLNLKHTDLMKGEHLTPEFLKLNPQ-HTVPYSQQTNSQEYRREESRAIIAYLAEQY 81 (126)
Q Consensus 3 ~~Ly~~~~s~~~~~v~~~l~~~gi~~~~~~v~~~~~~~~~~~~~~~~p~-~~vP~L~~~~~~~~~l~eS~aI~~yL~~~~ 81 (126)
|+||+++.|++|+|+|++|+++|++|+.+.++.. ++.++|.+.||. |++|+| +++|..++||.||++||++++
T Consensus 1 ~~Ly~~~~sp~~~~v~~~l~~~gl~~~~~~~~~~---~~~~~~~~~~p~~~~vP~l---~~~~~~l~eS~aI~~yL~~~~ 74 (74)
T cd03058 1 VKLLGAWASPFVLRVRIALALKGVPYEYVEEDLG---NKSELLLASNPVHKKIPVL---LHNGKPICESLIIVEYIDEAW 74 (74)
T ss_pred CEEEECCCCchHHHHHHHHHHcCCCCEEEEeCcc---cCCHHHHHhCCCCCCCCEE---EECCEEeehHHHHHHHHHhhC
Confidence 6899999999999999999999999999988775 467899999995 999999 888999999999999999863
No 30
>PRK10387 glutaredoxin 2; Provisional
Probab=99.85 E-value=6e-21 Score=131.97 Aligned_cols=101 Identities=22% Similarity=0.280 Sum_probs=81.8
Q ss_pred eEEecCCCCchHHHHHHHHHHhCCCceEEEccCCCCCCCChhHhhhCCCCccceeeeecCCCeeeechHHHHHHHHHHhC
Q psy2059 3 IDFYYVPGSAPCRAVQLAAAQIGVPLNLKHTDLMKGEHLTPEFLKLNPQHTVPYSQQTNSQEYRREESRAIIAYLAEQYG 82 (126)
Q Consensus 3 ~~Ly~~~~s~~~~~v~~~l~~~gi~~~~~~v~~~~~~~~~~~~~~~~p~~~vP~L~~~~~~~~~l~eS~aI~~yL~~~~~ 82 (126)
|+||+++.||+|+||+++|+++|++|+.+.++... +..+ .+.||.|+||+|+ .+||..|+||.||++||+++|+
T Consensus 1 ~~Ly~~~~sp~~~kv~~~L~~~gi~y~~~~~~~~~--~~~~--~~~~p~~~VPvL~--~~~g~~l~eS~aI~~yL~~~~~ 74 (210)
T PRK10387 1 MKLYIYDHCPFCVKARMIFGLKNIPVELIVLANDD--EATP--IRMIGQKQVPILQ--KDDGSYMPESLDIVHYIDELDG 74 (210)
T ss_pred CEEEeCCCCchHHHHHHHHHHcCCCeEEEEcCCCc--hhhH--HHhcCCcccceEE--ecCCeEecCHHHHHHHHHHhCC
Confidence 68999999999999999999999999998876432 2222 5789999999994 4789999999999999999998
Q ss_pred CCCCCCCCCHHHHHHHHHHHhhhccccchhh
Q psy2059 83 KDDSLYPKDPKARGIVNQRLYFDIGTLYQRF 113 (126)
Q Consensus 83 ~~~~l~p~~~~~~~~~~~wl~~~~~~~~~~~ 113 (126)
++ +++ + .+++.+++|+.+....+...+
T Consensus 75 ~~--~l~-~-~~~~~~~~~~~~~~~~~~~~~ 101 (210)
T PRK10387 75 KP--LLT-G-KRSPAIEEWLRKVFGYLNKLL 101 (210)
T ss_pred Cc--cCC-C-cccHHHHHHHHHHHHHhhcch
Confidence 64 343 2 367889999988766555443
No 31
>cd03042 GST_N_Zeta GST_N family, Class Zeta subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Zeta GSTs, also known as maleylacetoacetate (MAA) isomerases, catalyze the isomerization of MAA to fumarylacetoacetate, the penultimate step in tyrosine/phenylalanine catabolism, using GSH as a cofactor. They show little GSH-conjugating activity towards traditional GST substrates but display modest GSH peroxidase activity. They are also implicated in the detoxification of the carcinogen dichloroacetic acid by catalyzing its dechlorination to glyoxylic acid.
Probab=99.85 E-value=7.8e-21 Score=111.07 Aligned_cols=73 Identities=32% Similarity=0.411 Sum_probs=68.6
Q ss_pred eEEecCCCCchHHHHHHHHHHhCCCceEEEccCCCCCCCChhHhhhCCCCccceeeeecCCCeeeechHHHHHHHH
Q psy2059 3 IDFYYVPGSAPCRAVQLAAAQIGVPLNLKHTDLMKGEHLTPEFLKLNPQHTVPYSQQTNSQEYRREESRAIIAYLA 78 (126)
Q Consensus 3 ~~Ly~~~~s~~~~~v~~~l~~~gi~~~~~~v~~~~~~~~~~~~~~~~p~~~vP~L~~~~~~~~~l~eS~aI~~yL~ 78 (126)
|+||+++.|++|+++|++|+++|++|+.+.++...+.++.++|++.||.|++|+| +++|..++||.||++||+
T Consensus 1 ~~L~~~~~~~~~~~~~~~l~~~gi~~~~~~~~~~~~~~~~~~~~~~~p~~~vP~l---~~~~~~l~es~aI~~yL~ 73 (73)
T cd03042 1 MILYSYFRSSASYRVRIALNLKGLDYEYVPVNLLKGEQLSPAYRALNPQGLVPTL---VIDGLVLTQSLAIIEYLD 73 (73)
T ss_pred CEEecCCCCcchHHHHHHHHHcCCCCeEEEecCccCCcCChHHHHhCCCCCCCEE---EECCEEEEcHHHHHHHhC
Confidence 5899999999999999999999999999999987777788999999999999999 888999999999999984
No 32
>cd03076 GST_N_Pi GST_N family, Class Pi subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Pi GST is a homodimeric eukaryotic protein. The human GSTP1 is mainly found in erythrocytes, kidney, placenta and fetal liver. It is involved in stress responses and in cellular proliferation pathways as an inhibitor of JNK (c-Jun N-terminal kinase). Following oxidative stress, monomeric GSTP1 dissociates from JNK and dimerizes, losing its ability to bind JNK and causing an increase in JNK activity, thereby promoting apoptosis. GSTP1 is expressed in various tumors and is the predominant GST in a w
Probab=99.84 E-value=5.5e-21 Score=112.21 Aligned_cols=72 Identities=15% Similarity=0.176 Sum_probs=65.7
Q ss_pred eeEEecCCCCchHHHHHHHHHHhCCCceEEEccCCCCCCCChhHhhhCCCCccceeeeecCCCeeeechHHHHHHHHH
Q psy2059 2 TIDFYYVPGSAPCRAVQLAAAQIGVPLNLKHTDLMKGEHLTPEFLKLNPQHTVPYSQQTNSQEYRREESRAIIAYLAE 79 (126)
Q Consensus 2 ~~~Ly~~~~s~~~~~v~~~l~~~gi~~~~~~v~~~~~~~~~~~~~~~~p~~~vP~L~~~~~~~~~l~eS~aI~~yL~~ 79 (126)
+++||+++.+++|+++|++|+++|++|+.+.++.. ++.++++++||.|++|+| ++||..++||.||++||++
T Consensus 1 ~~~Ly~~~~~~~~~~v~~~L~~~~i~~e~~~v~~~---~~~~~~~~~~p~~~vP~l---~~~~~~l~es~aI~~yL~~ 72 (73)
T cd03076 1 PYTLTYFPVRGRAEAIRLLLADQGISWEEERVTYE---EWQESLKPKMLFGQLPCF---KDGDLTLVQSNAILRHLGR 72 (73)
T ss_pred CcEEEEeCCcchHHHHHHHHHHcCCCCEEEEecHH---HhhhhhhccCCCCCCCEE---EECCEEEEcHHHHHHHHhc
Confidence 47999999999999999999999999999998763 345689999999999999 8899999999999999985
No 33
>cd03060 GST_N_Omega_like GST_N family, Omega-like subfamily; composed of uncharacterized proteins with similarity to class Omega GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Omega GSTs show little or no GSH-conjugating activity towards standard GST substrates. Instead, they catalyze the GSH dependent reduction of protein disulfides, dehydroascorbate and monomethylarsonate, activities which are more characteristic of glutaredoxins. Like Omega enzymes, proteins in this subfamily contain a conserved cysteine equivalent to the first cysteine in the CXXC motif of glutaredoxins, which is a r
Probab=99.83 E-value=4.5e-20 Score=107.66 Aligned_cols=68 Identities=22% Similarity=0.273 Sum_probs=62.8
Q ss_pred EEecCCCCchHHHHHHHHHHhCCCceEEEccCCCCCCCChhHhhhCCCCccceeeeecC-CCeeeechHHHHHHH
Q psy2059 4 DFYYVPGSAPCRAVQLAAAQIGVPLNLKHTDLMKGEHLTPEFLKLNPQHTVPYSQQTNS-QEYRREESRAIIAYL 77 (126)
Q Consensus 4 ~Ly~~~~s~~~~~v~~~l~~~gi~~~~~~v~~~~~~~~~~~~~~~~p~~~vP~L~~~~~-~~~~l~eS~aI~~yL 77 (126)
+||+++.||+|++++++|+++|++|+.+.++... +.++|+++||.|+||+| .+ ||..|+||.||++|+
T Consensus 2 ~ly~~~~~p~~~rv~~~L~~~gl~~e~~~v~~~~---~~~~~~~~np~~~vP~L---~~~~g~~l~eS~aI~~y~ 70 (71)
T cd03060 2 ILYSFRRCPYAMRARMALLLAGITVELREVELKN---KPAEMLAASPKGTVPVL---VLGNGTVIEESLDIMRWA 70 (71)
T ss_pred EEEecCCCcHHHHHHHHHHHcCCCcEEEEeCCCC---CCHHHHHHCCCCCCCEE---EECCCcEEecHHHHHHhh
Confidence 7999999999999999999999999999998863 46899999999999999 65 699999999999996
No 34
>cd03061 GST_N_CLIC GST_N family, Chloride Intracellular Channel (CLIC) subfamily; composed of CLIC1-5, p64, parchorin and similar proteins. They are auto-inserting, self-assembling intracellular anion channels involved in a wide variety of functions including regulated secretion, cell division and apoptosis. They can exist in both water-soluble and membrane-bound states, and are found in various vesicles and membranes. Biochemical studies of the C. elegans homolog, EXC-4, show that the membrane localization domain is present in the N-terminal part of the protein. The structure of soluble human CLIC1 reveals that it is monomeric and it adopts a fold similar to GSTs, containing an N-terminal domain with a TRX fold and a C-terminal alpha helical domain. Upon oxidation, the N-terminal domain of CLIC1 undergoes a structural change to form a non-covalent dimer stabilized by the formation of an intramolecular disulfide bond between two cysteines that are far apart in the reduced form. The CLI
Probab=99.82 E-value=7.6e-20 Score=111.24 Aligned_cols=70 Identities=16% Similarity=0.251 Sum_probs=64.5
Q ss_pred CCCchHHHHHHHHHHhCCCceEEEccCCCCCCCChhHhhhCCCCccceeeeecCCCeeeechHHHHHHHHHHhCCC
Q psy2059 9 PGSAPCRAVQLAAAQIGVPLNLKHTDLMKGEHLTPEFLKLNPQHTVPYSQQTNSQEYRREESRAIIAYLAEQYGKD 84 (126)
Q Consensus 9 ~~s~~~~~v~~~l~~~gi~~~~~~v~~~~~~~~~~~~~~~~p~~~vP~L~~~~~~~~~l~eS~aI~~yL~~~~~~~ 84 (126)
..|++|+++|++|+++|++|+.+.+++.. +.++|+++||.|++|+| .++|.+|+||.+|++||++++..+
T Consensus 20 g~cpf~~rvrl~L~eKgi~ye~~~vd~~~---~p~~~~~~nP~g~vPvL---~~~~~~i~eS~~I~eYLde~~~~~ 89 (91)
T cd03061 20 GNCPFCQRLFMVLWLKGVVFNVTTVDMKR---KPEDLKDLAPGTQPPFL---LYNGEVKTDNNKIEEFLEETLCPP 89 (91)
T ss_pred CCChhHHHHHHHHHHCCCceEEEEeCCCC---CCHHHHHhCCCCCCCEE---EECCEEecCHHHHHHHHHHHccCC
Confidence 46899999999999999999999999864 56899999999999999 889999999999999999998754
No 35
>cd03049 GST_N_3 GST_N family, unknown subfamily 3; composed of uncharacterized bacterial proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=99.82 E-value=7.7e-20 Score=107.11 Aligned_cols=71 Identities=25% Similarity=0.334 Sum_probs=63.8
Q ss_pred eEEecCCCCchHHHHHHHHHH--hCCCceEEEccCCCCCCCChhHhhhCCCCccceeeeecCCCeeeechHHHHHHHH
Q psy2059 3 IDFYYVPGSAPCRAVQLAAAQ--IGVPLNLKHTDLMKGEHLTPEFLKLNPQHTVPYSQQTNSQEYRREESRAIIAYLA 78 (126)
Q Consensus 3 ~~Ly~~~~s~~~~~v~~~l~~--~gi~~~~~~v~~~~~~~~~~~~~~~~p~~~vP~L~~~~~~~~~l~eS~aI~~yL~ 78 (126)
++||+++.|++|+++|++|++ +|++|+.+.++.. .+.++|++.||.+++|+|+ .+||..++||.||++||+
T Consensus 1 ~~Ly~~~~s~~~~~~~~~l~~~~~~i~~~~~~~~~~---~~~~~~~~~~p~~~vP~l~--~~~g~~l~es~aI~~yLe 73 (73)
T cd03049 1 MKLLYSPTSPYVRKVRVAAHETGLGDDVELVLVNPW---SDDESLLAVNPLGKIPALV--LDDGEALFDSRVICEYLD 73 (73)
T ss_pred CEEecCCCCcHHHHHHHHHHHhCCCCCcEEEEcCcc---cCChHHHHhCCCCCCCEEE--ECCCCEEECHHHHHhhhC
Confidence 589999999999999999999 8899999988753 3678999999999999993 368899999999999985
No 36
>PLN02378 glutathione S-transferase DHAR1
Probab=99.81 E-value=1.7e-19 Score=125.48 Aligned_cols=87 Identities=20% Similarity=0.305 Sum_probs=75.2
Q ss_pred CCCCchHHHHHHHHHHhCCCceEEEccCCCCCCCChhHhhhCCCCccceeeeecCCCeeeechHHHHHHHHHHhCCCCCC
Q psy2059 8 VPGSAPCRAVQLAAAQIGVPLNLKHTDLMKGEHLTPEFLKLNPQHTVPYSQQTNSQEYRREESRAIIAYLAEQYGKDDSL 87 (126)
Q Consensus 8 ~~~s~~~~~v~~~l~~~gi~~~~~~v~~~~~~~~~~~~~~~~p~~~vP~L~~~~~~~~~l~eS~aI~~yL~~~~~~~~~l 87 (126)
...||+|+||+++|+++|++|+.+.+++.. +.++|+++||.|+||+| ++||.+|+||.||++||+++++... +
T Consensus 17 ~~~~p~~~rv~~~L~e~gl~~e~~~v~~~~---~~~~~l~inP~G~VPvL---~~~~~~l~ES~aI~~YL~~~~~~~~-l 89 (213)
T PLN02378 17 LGDCPFSQRALLTLEEKSLTYKIHLINLSD---KPQWFLDISPQGKVPVL---KIDDKWVTDSDVIVGILEEKYPDPP-L 89 (213)
T ss_pred CCCCcchHHHHHHHHHcCCCCeEEEeCccc---CCHHHHHhCCCCCCCEE---EECCEEecCHHHHHHHHHHhCCCCC-C
Confidence 456999999999999999999999999864 56799999999999999 8889999999999999999998653 4
Q ss_pred CCCCHHHHHHHHHHHh
Q psy2059 88 YPKDPKARGIVNQRLY 103 (126)
Q Consensus 88 ~p~~~~~~~~~~~wl~ 103 (126)
.++.++++++.++.
T Consensus 90 --~~~~~~a~i~~~~~ 103 (213)
T PLN02378 90 --KTPAEFASVGSNIF 103 (213)
T ss_pred --CCHHHHHHHHHHHH
Confidence 35777887766543
No 37
>cd03039 GST_N_Sigma_like GST_N family, Class Sigma_like; composed of GSTs belonging to class Sigma and similar proteins, including GSTs from class Mu, Pi and Alpha. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Vertebrate class Sigma GSTs are characterized as GSH-dependent hematopoietic prostaglandin (PG) D synthases and are responsible for the production of PGD2 by catalyzing the isomerization of PGH2. The functions of PGD2 include the maintenance of body temperature, inhibition of platelet aggregation, bronchoconstriction, vasodilation and mediation of allergy and inflammation. Other class Sigma
Probab=99.81 E-value=3.2e-20 Score=108.51 Aligned_cols=72 Identities=18% Similarity=0.187 Sum_probs=64.2
Q ss_pred eEEecCCCCchHHHHHHHHHHhCCCceEEEccCCCCCCCChhHhhhCCCCccceeeeecCCCeeeechHHHHHHHHH
Q psy2059 3 IDFYYVPGSAPCRAVQLAAAQIGVPLNLKHTDLMKGEHLTPEFLKLNPQHTVPYSQQTNSQEYRREESRAIIAYLAE 79 (126)
Q Consensus 3 ~~Ly~~~~s~~~~~v~~~l~~~gi~~~~~~v~~~~~~~~~~~~~~~~p~~~vP~L~~~~~~~~~l~eS~aI~~yL~~ 79 (126)
++||+++.+++|+++|++|+++|++|+.+.++... ...++|.++||.|++|+| +++|..++||.||++||++
T Consensus 1 ~~Ly~~~~~~~~~~v~~~l~~~gi~~e~~~~~~~~--~~~~~~~~~~p~~~vP~L---~~~~~~l~es~aI~~yL~~ 72 (72)
T cd03039 1 YKLTYFNIRGRGEPIRLLLADAGVEYEDVRITYEE--WPELDLKPTLPFGQLPVL---EIDGKKLTQSNAILRYLAR 72 (72)
T ss_pred CEEEEEcCcchHHHHHHHHHHCCCCcEEEEeCHHH--hhhhhhccCCcCCCCCEE---EECCEEEEecHHHHHHhhC
Confidence 58999999999999999999999999999988653 233568899999999999 8889999999999999973
No 38
>cd03075 GST_N_Mu GST_N family, Class Mu subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Mu subfamily is composed of eukaryotic GSTs. In rats, at least six distinct class Mu subunits have been identified, with homologous genes in humans for five of these subunits. Class Mu GSTs can form homodimers and heterodimers, giving a large number of possible isoenzymes that can be formed, all with overlapping activities but different substrate specificities. They are the most abundant GSTs in human liver, skeletal muscle and brain, and are believed to provide protection against diseases inc
Probab=99.81 E-value=8.9e-20 Score=109.41 Aligned_cols=75 Identities=17% Similarity=0.219 Sum_probs=65.0
Q ss_pred EEecCCCCchHHHHHHHHHHhCCCceEEEccCCCCCCC-ChhHhh-----hCCCCccceeeeecCCCeeeechHHHHHHH
Q psy2059 4 DFYYVPGSAPCRAVQLAAAQIGVPLNLKHTDLMKGEHL-TPEFLK-----LNPQHTVPYSQQTNSQEYRREESRAIIAYL 77 (126)
Q Consensus 4 ~Ly~~~~s~~~~~v~~~l~~~gi~~~~~~v~~~~~~~~-~~~~~~-----~~p~~~vP~L~~~~~~~~~l~eS~aI~~yL 77 (126)
+||++..+++|+++|++|+++|++|+.+.+++..+++. .+++.+ .+|+|+||+| ++||..|+||.||++||
T Consensus 2 ~l~y~~~~~~~~~~~~~l~~~gi~~e~~~v~~~~~~~~~~~~~~~~~~~~~~P~g~vP~L---~~~g~~l~ES~AIl~YL 78 (82)
T cd03075 2 TLGYWDIRGLAQPIRLLLEYTGEKYEEKRYELGDAPDYDRSQWLNEKFKLGLDFPNLPYY---IDGDVKLTQSNAILRYI 78 (82)
T ss_pred EEEEeCCccccHHHHHHHHHcCCCcEEEEeccCCccccchHhhhccchhcCCcCCCCCEE---EECCEEEeehHHHHHHH
Confidence 79999999999999999999999999999998776553 355542 2399999999 88999999999999999
Q ss_pred HHHh
Q psy2059 78 AEQY 81 (126)
Q Consensus 78 ~~~~ 81 (126)
++++
T Consensus 79 a~~~ 82 (82)
T cd03075 79 ARKH 82 (82)
T ss_pred hhcC
Confidence 9864
No 39
>TIGR02182 GRXB Glutaredoxin, GrxB family. This model includes the highly abundant E. coli GrxB (Grx2) glutaredoxin which is notably longer than either GrxA or GrxC. Unlike the other two E. coli glutaredoxins, GrxB appears to be unable to reduce ribonucleotide reductase, and may have more to do with resistance to redox stress.
Probab=99.81 E-value=2.1e-19 Score=124.79 Aligned_cols=96 Identities=16% Similarity=0.147 Sum_probs=76.8
Q ss_pred EEecCCCCchHHHHHHHHHHhCCCceEEEccCCCCCCCChhHhhhCCCCccceeeeec-CCCeeeechHHHHHHHHHHhC
Q psy2059 4 DFYYVPGSAPCRAVQLAAAQIGVPLNLKHTDLMKGEHLTPEFLKLNPQHTVPYSQQTN-SQEYRREESRAIIAYLAEQYG 82 (126)
Q Consensus 4 ~Ly~~~~s~~~~~v~~~l~~~gi~~~~~~v~~~~~~~~~~~~~~~~p~~~vP~L~~~~-~~~~~l~eS~aI~~yL~~~~~ 82 (126)
+||++..||+|+|||++|+++|++|+.+.++.. ++. ...+.||.|+||+| + +||..|+||.+|++||+++|+
T Consensus 1 ~Ly~~~~sp~~~kvr~~L~~~gl~~e~~~~~~~--~~~--~~~~~np~g~vP~l---~~~~g~~l~es~~I~~yL~~~~~ 73 (209)
T TIGR02182 1 KLYIYDHCPFCVRARMIFGLKNIPVEKHVLLND--DEE--TPIRMIGAKQVPIL---QKDDGRAMPESLDIVAYFDKLDG 73 (209)
T ss_pred CeecCCCCChHHHHHHHHHHcCCCeEEEECCCC--cch--hHHHhcCCCCcceE---EeeCCeEeccHHHHHHHHHHhCC
Confidence 689999999999999999999999998766443 222 34789999999999 6 889999999999999999997
Q ss_pred CCCCCCCCCHHHHHHHHHHHhhhccccc
Q psy2059 83 KDDSLYPKDPKARGIVNQRLYFDIGTLY 110 (126)
Q Consensus 83 ~~~~l~p~~~~~~~~~~~wl~~~~~~~~ 110 (126)
.+ +++ +.+++++++|+.+....+.
T Consensus 74 ~~--~~~--~~~~~~~~~~~~~~~~~~~ 97 (209)
T TIGR02182 74 EP--LLT--GKVSPEIEAWLRKVTGYAN 97 (209)
T ss_pred Cc--cCC--CCChHHHHHHHHHHHHHhh
Confidence 64 333 2256677888876554443
No 40
>cd03055 GST_N_Omega GST_N family, Class Omega subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Omega GSTs show little or no GSH-conjugating activity towards standard GST substrates. Instead, they catalyze the GSH dependent reduction of protein disulfides, dehydroascorbate and monomethylarsonate, activities which are more characteristic of glutaredoxins. They contain a conserved cysteine equivalent to the first cysteine in the CXXC motif of glutaredoxins, which is a redox active residue capable of reducing GSH mixed disulfides in a monothiol mechanism. Polymorphisms of the class Omega
Probab=99.80 E-value=2.8e-19 Score=108.74 Aligned_cols=71 Identities=25% Similarity=0.267 Sum_probs=64.2
Q ss_pred eeEEecCCCCchHHHHHHHHHHhCCCceEEEccCCCCCCCChhHhhhCCCCccceeeeecC-CCeeeechHHHHHHHH
Q psy2059 2 TIDFYYVPGSAPCRAVQLAAAQIGVPLNLKHTDLMKGEHLTPEFLKLNPQHTVPYSQQTNS-QEYRREESRAIIAYLA 78 (126)
Q Consensus 2 ~~~Ly~~~~s~~~~~v~~~l~~~gi~~~~~~v~~~~~~~~~~~~~~~~p~~~vP~L~~~~~-~~~~l~eS~aI~~yL~ 78 (126)
.++||+.+.||+|++++++|+++|++|+.+.++... ..++|.+.||.+++|+| ++ +|..++||.||++||+
T Consensus 18 ~~~Ly~~~~sp~~~kv~~~L~~~gl~~~~~~v~~~~---~~~~~~~~np~~~vPvL---~~~~g~~l~eS~aI~~yLe 89 (89)
T cd03055 18 IIRLYSMRFCPYAQRARLVLAAKNIPHEVININLKD---KPDWFLEKNPQGKVPAL---EIDEGKVVYESLIICEYLD 89 (89)
T ss_pred cEEEEeCCCCchHHHHHHHHHHcCCCCeEEEeCCCC---CcHHHHhhCCCCCcCEE---EECCCCEEECHHHHHHhhC
Confidence 489999999999999999999999999999988753 45779999999999999 65 4899999999999985
No 41
>cd03037 GST_N_GRX2 GST_N family, Glutaredoxin 2 (GRX2) subfamily; composed of bacterial proteins similar to E. coli GRX2, an atypical GRX with a molecular mass of about 24kD, compared with other GRXs which are 9-12kD in size. GRX2 adopts a GST fold containing an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain. It contains a redox active CXXC motif located in the N-terminal domain but is not able to reduce ribonucleotide reductase like other GRXs. However, it catalyzes GSH-dependent protein disulfide reduction of other substrates efficiently. GRX2 is thought to function primarily in catalyzing the reversible glutathionylation of proteins in cellular redox regulation including stress responses.
Probab=99.80 E-value=2.2e-19 Score=104.63 Aligned_cols=70 Identities=16% Similarity=0.224 Sum_probs=60.6
Q ss_pred eEEecCCCCchHHHHHHHHHHhCCCceEEEccCCCCCCCChhHhhhCCCCccceeeeecC-CCeeeechHHHHHHHHH
Q psy2059 3 IDFYYVPGSAPCRAVQLAAAQIGVPLNLKHTDLMKGEHLTPEFLKLNPQHTVPYSQQTNS-QEYRREESRAIIAYLAE 79 (126)
Q Consensus 3 ~~Ly~~~~s~~~~~v~~~l~~~gi~~~~~~v~~~~~~~~~~~~~~~~p~~~vP~L~~~~~-~~~~l~eS~aI~~yL~~ 79 (126)
|+||+++.||+|+|+|++|+++|++|+.+.++... .....+.+|.+++|+| ++ ||..++||.+|++||++
T Consensus 1 ~~Ly~~~~~p~~~rvr~~L~~~gl~~~~~~~~~~~----~~~~~~~~~~~~vP~L---~~~~~~~l~es~aI~~yL~~ 71 (71)
T cd03037 1 MKLYIYEHCPFCVKARMIAGLKNIPVEQIILQNDD----EATPIRMIGAKQVPIL---EKDDGSFMAESLDIVAFIDE 71 (71)
T ss_pred CceEecCCCcHhHHHHHHHHHcCCCeEEEECCCCc----hHHHHHhcCCCccCEE---EeCCCeEeehHHHHHHHHhC
Confidence 58999999999999999999999999998877432 2344678999999999 65 58999999999999974
No 42
>PF13409 GST_N_2: Glutathione S-transferase, N-terminal domain; PDB: 3C8E_B 3M1G_A 3R3E_A 3O3T_A 1RK4_A 1K0O_B 1K0N_A 3QR6_A 3SWL_A 3TGZ_B ....
Probab=99.79 E-value=6.8e-19 Score=102.54 Aligned_cols=69 Identities=39% Similarity=0.526 Sum_probs=58.2
Q ss_pred CCchHHHHHHHHHHhCCCceEEEccC-CCCCCCChhHhhhCCCCccceeeeecCCCeeeechHHHHHHHHHH
Q psy2059 10 GSAPCRAVQLAAAQIGVPLNLKHTDL-MKGEHLTPEFLKLNPQHTVPYSQQTNSQEYRREESRAIIAYLAEQ 80 (126)
Q Consensus 10 ~s~~~~~v~~~l~~~gi~~~~~~v~~-~~~~~~~~~~~~~~p~~~vP~L~~~~~~~~~l~eS~aI~~yL~~~ 80 (126)
.||+|+|++++|+++|++++...+.. .++..+.++|.+.||.|+||+|+ .++|.+++||.+|++||+++
T Consensus 1 ~sP~a~Rv~i~l~~~gl~~~~~~v~~~~~~~~~~~~~~~~~p~~~VP~L~--~~~g~vi~eS~~I~~yL~~~ 70 (70)
T PF13409_consen 1 FSPFAHRVRIALEEKGLPYEIKVVPLIPKGEQKPPEFLALNPRGKVPVLV--DPDGTVINESLAILEYLEEQ 70 (70)
T ss_dssp T-HHHHHHHHHHHHHTGTCEEEEEETTTTBCTTCHBHHHHSTT-SSSEEE--ETTTEEEESHHHHHHHHHHT
T ss_pred CchHhHHHHHHHHHhCCCCEEEEEeeecCccccChhhhccCcCeEEEEEE--ECCCCEeeCHHHHHHHHhcC
Confidence 48999999999999999999988854 34455678999999999999994 34899999999999999974
No 43
>cd03038 GST_N_etherase_LigE GST_N family, Beta etherase LigE subfamily; composed of proteins similar to Sphingomonas paucimobilis beta etherase, LigE, a GST-like protein that catalyzes the cleavage of the beta-aryl ether linkages present in low-moleculer weight lignins using GSH as the hydrogen donor. This reaction is an essential step in the degradation of lignin, a complex phenolic polymer that is the most abundant aromatic material in the biosphere. The beta etherase activity of LigE is enantioselective and it complements the activity of the other GST family beta etherase, LigF.
Probab=99.79 E-value=5.3e-19 Score=106.29 Aligned_cols=70 Identities=21% Similarity=0.130 Sum_probs=61.3
Q ss_pred CCCchHHHHHHHHHHhCCCceEEEccCCCCCCCChhHhhhCCCCccceeeeecCC-CeeeechHHHHHHHHHHhC
Q psy2059 9 PGSAPCRAVQLAAAQIGVPLNLKHTDLMKGEHLTPEFLKLNPQHTVPYSQQTNSQ-EYRREESRAIIAYLAEQYG 82 (126)
Q Consensus 9 ~~s~~~~~v~~~l~~~gi~~~~~~v~~~~~~~~~~~~~~~~p~~~vP~L~~~~~~-~~~l~eS~aI~~yL~~~~~ 82 (126)
..|++|+|+|++|+++|++|+.+.++....++..+++ +.||.|++|+| +++ |..++||.+|++||+++|+
T Consensus 14 ~~Sp~~~kv~~~L~~~~i~~~~~~~~~~~~~~~~~~~-~~~p~~~vP~L---~~~~~~~l~eS~aI~~yL~~~~p 84 (84)
T cd03038 14 AFSPNVWKTRLALNHKGLEYKTVPVEFPDIPPILGEL-TSGGFYTVPVI---VDGSGEVIGDSFAIAEYLEEAYP 84 (84)
T ss_pred CcCChhHHHHHHHHhCCCCCeEEEecCCCcccccccc-cCCCCceeCeE---EECCCCEEeCHHHHHHHHHHhCc
Confidence 5689999999999999999999999876554445555 89999999999 777 8999999999999999864
No 44
>PLN02817 glutathione dehydrogenase (ascorbate)
Probab=99.78 E-value=1.8e-18 Score=124.06 Aligned_cols=86 Identities=26% Similarity=0.412 Sum_probs=76.0
Q ss_pred CCCchHHHHHHHHHHhCCCceEEEccCCCCCCCChhHhhhCCCCccceeeeecCCCeeeechHHHHHHHHHHhCCCCCCC
Q psy2059 9 PGSAPCRAVQLAAAQIGVPLNLKHTDLMKGEHLTPEFLKLNPQHTVPYSQQTNSQEYRREESRAIIAYLAEQYGKDDSLY 88 (126)
Q Consensus 9 ~~s~~~~~v~~~l~~~gi~~~~~~v~~~~~~~~~~~~~~~~p~~~vP~L~~~~~~~~~l~eS~aI~~yL~~~~~~~~~l~ 88 (126)
..||+|++++++|+++|++|+.+.+++.. +.++|+++||.|+||+| +++|.+|+||.+|++||+++++++. +.
T Consensus 71 g~cp~s~rV~i~L~ekgi~ye~~~vdl~~---~~~~fl~iNP~GkVPvL---~~d~~~L~ES~aI~~YL~e~~p~~~-L~ 143 (265)
T PLN02817 71 GDCPFCQRVLLTLEEKHLPYDMKLVDLTN---KPEWFLKISPEGKVPVV---KLDEKWVADSDVITQALEEKYPDPP-LA 143 (265)
T ss_pred CCCcHHHHHHHHHHHcCCCCEEEEeCcCc---CCHHHHhhCCCCCCCEE---EECCEEEecHHHHHHHHHHHCCCCC-CC
Confidence 44899999999999999999999998853 67899999999999999 8888899999999999999998754 53
Q ss_pred CCCHHHHHHHHHHHh
Q psy2059 89 PKDPKARGIVNQRLY 103 (126)
Q Consensus 89 p~~~~~~~~~~~wl~ 103 (126)
++.+++++++|+.
T Consensus 144 --~~~era~i~~~l~ 156 (265)
T PLN02817 144 --TPPEKASVGSKIF 156 (265)
T ss_pred --CHHHHHHHHHHHH
Confidence 5788999988764
No 45
>TIGR00862 O-ClC intracellular chloride channel protein. These proteins are thought to function in the regulation of the membrane potential and in transepithelial ion absorption and secretion in the kidney.
Probab=99.77 E-value=4.5e-18 Score=120.05 Aligned_cols=83 Identities=18% Similarity=0.263 Sum_probs=72.2
Q ss_pred CCCchHHHHHHHHHHhCCCceEEEccCCCCCCCChhHhhhCCCCccceeeeecCCCeeeechHHHHHHHHHHhCCC--CC
Q psy2059 9 PGSAPCRAVQLAAAQIGVPLNLKHTDLMKGEHLTPEFLKLNPQHTVPYSQQTNSQEYRREESRAIIAYLAEQYGKD--DS 86 (126)
Q Consensus 9 ~~s~~~~~v~~~l~~~gi~~~~~~v~~~~~~~~~~~~~~~~p~~~vP~L~~~~~~~~~l~eS~aI~~yL~~~~~~~--~~ 86 (126)
+.||+|++|+++|+++|++|+.+.+|+.. +.++|+++||.|+||+| +++|.+|+||.+|++||+++|+.+ +.
T Consensus 17 ~~cp~~~rv~i~L~ekgi~~e~~~vd~~~---~~~~fl~inP~g~vPvL---~~~g~~l~ES~aI~eYL~e~~~~~~~p~ 90 (236)
T TIGR00862 17 GNCPFSQRLFMILWLKGVVFNVTTVDLKR---KPEDLQNLAPGTHPPFL---TYNTEVKTDVNKIEEFLEETLCPPRYPK 90 (236)
T ss_pred CCCHhHHHHHHHHHHcCCCcEEEEECCCC---CCHHHHHHCcCCCCCEE---EECCEEeecHHHHHHHHHHHcCCCCCCC
Confidence 57999999999999999999999999874 57999999999999999 889999999999999999999753 23
Q ss_pred CCCCCHHHHHH
Q psy2059 87 LYPKDPKARGI 97 (126)
Q Consensus 87 l~p~~~~~~~~ 97 (126)
+.|.++..++.
T Consensus 91 l~p~~~~~~~~ 101 (236)
T TIGR00862 91 LSPKHPESNTA 101 (236)
T ss_pred CCCCCHHHHHH
Confidence 66666665554
No 46
>cd03077 GST_N_Alpha GST_N family, Class Alpha subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Alpha subfamily is composed of eukaryotic GSTs which can form homodimer and heterodimers. There are at least six types of class Alpha GST subunits in rats, four of which have human counterparts, resulting in many possible isoenzymes with different activities, tissue distribution and substrate specificities. Human GSTA1-1 and GSTA2-2 show high GSH peroxidase activity. GSTA3-3 catalyzes the isomerization of intermediates in steroid hormone biosynthesis. GSTA4-4 preferentially catalyzes the
Probab=99.77 E-value=2.3e-18 Score=102.57 Aligned_cols=71 Identities=23% Similarity=0.333 Sum_probs=61.4
Q ss_pred eEEecCCCCchHHHHHHHHHHhCCCceEEEccCCCCCCCChhHhhh-----CCCCccceeeeecCCCeeeechHHHHHHH
Q psy2059 3 IDFYYVPGSAPCRAVQLAAAQIGVPLNLKHTDLMKGEHLTPEFLKL-----NPQHTVPYSQQTNSQEYRREESRAIIAYL 77 (126)
Q Consensus 3 ~~Ly~~~~s~~~~~v~~~l~~~gi~~~~~~v~~~~~~~~~~~~~~~-----~p~~~vP~L~~~~~~~~~l~eS~aI~~yL 77 (126)
++||+++.++++++++++|+++|++|+.+.++.. ++|.+. .|+|++|+| ++||..|+||.||++||
T Consensus 2 ~~Ly~~~~~~~~~~v~~~l~~~gi~~e~~~v~~~------~~~~~~~~~~~~~~g~vP~L---~~~g~~l~ES~AI~~YL 72 (79)
T cd03077 2 PVLHYFNGRGRMESIRWLLAAAGVEFEEKFIESA------EDLEKLKKDGSLMFQQVPMV---EIDGMKLVQTRAILNYI 72 (79)
T ss_pred CEEEEeCCCChHHHHHHHHHHcCCCcEEEEeccH------HHHHhhccccCCCCCCCCEE---EECCEEEeeHHHHHHHH
Confidence 5899999999999999999999999999988753 233333 369999999 88899999999999999
Q ss_pred HHHhC
Q psy2059 78 AEQYG 82 (126)
Q Consensus 78 ~~~~~ 82 (126)
+++++
T Consensus 73 ~~~~~ 77 (79)
T cd03077 73 AGKYN 77 (79)
T ss_pred HHHcC
Confidence 99876
No 47
>cd03080 GST_N_Metaxin_like GST_N family, Metaxin subfamily, Metaxin-like proteins; a heterogenous group of proteins, predominantly uncharacterized, with similarity to metaxins and GSTs. Metaxin 1 is a component of a preprotein import complex of the mitochondrial outer membrane. It extends to the cytosol and is anchored to the mitochondrial membrane through its C-terminal domain. In mice, metaxin is required for embryonic development. In humans, alterations in the metaxin gene may be associated with Gaucher disease. One characterized member of this subgroup is a novel GST from Rhodococcus with toluene o-monooxygenase and gamma-glutamylcysteine synthetase activities. Also members are the cadmium-inducible lysosomal protein CDR-1 and its homologs from C. elegans, and the failed axon connections (fax) protein from Drosophila. CDR-1 is an integral membrane protein that functions to protect against cadmium toxicity and may also have a role in osmoregulation to maintain salt balance in C. ele
Probab=99.77 E-value=2.6e-18 Score=101.28 Aligned_cols=67 Identities=30% Similarity=0.463 Sum_probs=60.3
Q ss_pred eEEecCC-------CCchHHHHHHHHHHhCCCceEEEccCCCCCCCChhHhhhCCCCccceeeeecCCCeeeechHHHHH
Q psy2059 3 IDFYYVP-------GSAPCRAVQLAAAQIGVPLNLKHTDLMKGEHLTPEFLKLNPQHTVPYSQQTNSQEYRREESRAIIA 75 (126)
Q Consensus 3 ~~Ly~~~-------~s~~~~~v~~~l~~~gi~~~~~~v~~~~~~~~~~~~~~~~p~~~vP~L~~~~~~~~~l~eS~aI~~ 75 (126)
++||.++ .|++|+|++++|+++|++|+.+.++. .+.||.|++|+| +++|..++||.+|++
T Consensus 2 ~~L~~~~~~~~~~~~sp~~~~v~~~L~~~gi~~~~~~~~~----------~~~~p~g~vPvl---~~~g~~l~eS~~I~~ 68 (75)
T cd03080 2 ITLYQFPRAFGVPSLSPFCLKVETFLRMAGIPYENKFGGL----------AKRSPKGKLPFI---ELNGEKIADSELIID 68 (75)
T ss_pred EEEEecCCCCCCCCCCHHHHHHHHHHHHCCCCcEEeecCc----------ccCCCCCCCCEE---EECCEEEcCHHHHHH
Confidence 5899998 58999999999999999999887753 268999999999 888999999999999
Q ss_pred HHHHHhC
Q psy2059 76 YLAEQYG 82 (126)
Q Consensus 76 yL~~~~~ 82 (126)
||+++|+
T Consensus 69 yL~~~~~ 75 (75)
T cd03080 69 HLEEKYG 75 (75)
T ss_pred HHHHHcC
Confidence 9999874
No 48
>cd03040 GST_N_mPGES2 GST_N family; microsomal Prostaglandin E synthase Type 2 (mPGES2) subfamily; mPGES2 is a membrane-anchored dimeric protein containing a CXXC motif which catalyzes the isomerization of PGH2 to PGE2. Unlike cytosolic PGE synthase (cPGES) and microsomal PGES Type 1 (mPGES1), mPGES2 does not require glutathione (GSH) for its activity, although its catalytic rate is increased two- to four-fold in the presence of DTT, GSH or other thiol compounds. PGE2 is widely distributed in various tissues and is implicated in the sleep/wake cycle, relaxation/contraction of smooth muscle, excretion of sodium ions, maintenance of body temperature and mediation of inflammation. mPGES2 contains an N-terminal hydrophobic domain which is membrane associated, and a C-terminal soluble domain with a GST-like structure.
Probab=99.76 E-value=3.5e-18 Score=100.98 Aligned_cols=72 Identities=19% Similarity=0.265 Sum_probs=61.4
Q ss_pred eEEecCCCCchHHHHHHHHHHhCCCceEEEccCCCCCCCChhHhhhCCCCccceeeeecC---CCeeeechHHHHHHHHH
Q psy2059 3 IDFYYVPGSAPCRAVQLAAAQIGVPLNLKHTDLMKGEHLTPEFLKLNPQHTVPYSQQTNS---QEYRREESRAIIAYLAE 79 (126)
Q Consensus 3 ~~Ly~~~~s~~~~~v~~~l~~~gi~~~~~~v~~~~~~~~~~~~~~~~p~~~vP~L~~~~~---~~~~l~eS~aI~~yL~~ 79 (126)
++||+++.||+|+|++++|+++|++|+.+.++... .++ ++.||.+++|+|+ .+ +|.+|+||.+|++||++
T Consensus 2 i~Ly~~~~~p~c~kv~~~L~~~gi~y~~~~~~~~~----~~~-~~~~~~~~vP~l~--~~~~~~~~~l~eS~~I~~yL~~ 74 (77)
T cd03040 2 ITLYQYKTCPFCCKVRAFLDYHGIPYEVVEVNPVS----RKE-IKWSSYKKVPILR--VESGGDGQQLVDSSVIISTLKT 74 (77)
T ss_pred EEEEEcCCCHHHHHHHHHHHHCCCceEEEECCchh----HHH-HHHhCCCccCEEE--ECCCCCccEEEcHHHHHHHHHH
Confidence 68999999999999999999999999998886532 233 4679999999994 23 47899999999999998
Q ss_pred Hh
Q psy2059 80 QY 81 (126)
Q Consensus 80 ~~ 81 (126)
..
T Consensus 75 ~~ 76 (77)
T cd03040 75 YL 76 (77)
T ss_pred Hc
Confidence 64
No 49
>PTZ00057 glutathione s-transferase; Provisional
Probab=99.75 E-value=1.1e-17 Score=115.64 Aligned_cols=89 Identities=21% Similarity=0.316 Sum_probs=70.6
Q ss_pred eEEecCCCCchHHHHHHHHHHhCCCceEEEccCCCCCCCChhHh--------hhCCCCccceeeeecCCCeeeechHHHH
Q psy2059 3 IDFYYVPGSAPCRAVQLAAAQIGVPLNLKHTDLMKGEHLTPEFL--------KLNPQHTVPYSQQTNSQEYRREESRAII 74 (126)
Q Consensus 3 ~~Ly~~~~s~~~~~v~~~l~~~gi~~~~~~v~~~~~~~~~~~~~--------~~~p~~~vP~L~~~~~~~~~l~eS~aI~ 74 (126)
++||+++.++++++||++|+++|++|+.+.++. +. ++|+ +.||+|+||+| ++||.+|+||.||+
T Consensus 5 ~~L~y~~~~~~~~~vrl~L~~~gi~ye~~~~~~----~~-~~~~~~~~~~~~~~nP~g~vP~L---~~~~~~l~eS~AI~ 76 (205)
T PTZ00057 5 IVLYYFDARGKAELIRLIFAYLGIEYTDKRFGE----NG-DAFIEFKNFKKEKDTPFEQVPIL---EMDNIIFAQSQAIV 76 (205)
T ss_pred eEEEecCCCcchHHHHHHHHHcCCCeEEEeccc----cc-hHHHHHHhccccCCCCCCCCCEE---EECCEEEecHHHHH
Confidence 899999999999999999999999999986632 12 2332 48999999999 88999999999999
Q ss_pred HHHHHHhCCCCCCCCCCHHHHHHHHHHHhhh
Q psy2059 75 AYLAEQYGKDDSLYPKDPKARGIVNQRLYFD 105 (126)
Q Consensus 75 ~yL~~~~~~~~~l~p~~~~~~~~~~~wl~~~ 105 (126)
+||+++++ +.+.+. ++++..|+.+.
T Consensus 77 ~YLa~~~~----~~~~~~--~~~~~~~~~~~ 101 (205)
T PTZ00057 77 RYLSKKYK----ICGESE--LNEFYADMIFC 101 (205)
T ss_pred HHHHHHcC----CCCCCH--HHHHHHHHHHH
Confidence 99999986 334343 44444555444
No 50
>cd03043 GST_N_1 GST_N family, unknown subfamily 1; composed of uncharacterized proteins, predominantly from bacteria, with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=99.75 E-value=5.7e-18 Score=99.38 Aligned_cols=68 Identities=22% Similarity=0.153 Sum_probs=61.2
Q ss_pred cCCCCchHHHHHHHHHHhCCCceEEEccCCCCCCCChhHhhhCCCCccceeeeecCCCeeeechHHHHHHHH
Q psy2059 7 YVPGSAPCRAVQLAAAQIGVPLNLKHTDLMKGEHLTPEFLKLNPQHTVPYSQQTNSQEYRREESRAIIAYLA 78 (126)
Q Consensus 7 ~~~~s~~~~~v~~~l~~~gi~~~~~~v~~~~~~~~~~~~~~~~p~~~vP~L~~~~~~~~~l~eS~aI~~yL~ 78 (126)
+...|+++++++++|+++|++|+.+.++...+ ...++|.++||.|++|+| +++|..++||.||++||+
T Consensus 6 ~~~~s~~s~~v~~~L~~~gl~~e~~~v~~~~~-~~~~~~~~~nP~g~vP~L---~~~g~~l~eS~aI~~YL~ 73 (73)
T cd03043 6 NKNYSSWSLRPWLLLKAAGIPFEEILVPLYTP-DTRARILEFSPTGKVPVL---VDGGIVVWDSLAICEYLA 73 (73)
T ss_pred CCCCCHHHHHHHHHHHHcCCCCEEEEeCCCCc-cccHHHHhhCCCCcCCEE---EECCEEEEcHHHHHHHhC
Confidence 45678999999999999999999999988653 356899999999999999 888999999999999984
No 51
>cd00570 GST_N_family Glutathione S-transferase (GST) family, N-terminal domain; a large, diverse group of cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. In addition, GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. This family, also referred to as soluble GSTs, is the largest family of GSH transferases and is only distantly related to the mitochondrial GSTs (GSTK subfamily, a member of the DsbA family). Soluble GSTs bear no structural similarity to microsomal GSTs (MAPEG family) and display additional activities unique to their group, such as catalyzing thiolysis, reduction and isomerization of certain compounds. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical doma
Probab=99.72 E-value=3.9e-17 Score=93.48 Aligned_cols=71 Identities=42% Similarity=0.639 Sum_probs=62.9
Q ss_pred eEEecCCCCchHHHHHHHHHHhCCCceEEEccCCCCCCCChhHhhhCCCCccceeeeecCCCeeeechHHHHHHHH
Q psy2059 3 IDFYYVPGSAPCRAVQLAAAQIGVPLNLKHTDLMKGEHLTPEFLKLNPQHTVPYSQQTNSQEYRREESRAIIAYLA 78 (126)
Q Consensus 3 ~~Ly~~~~s~~~~~v~~~l~~~gi~~~~~~v~~~~~~~~~~~~~~~~p~~~vP~L~~~~~~~~~l~eS~aI~~yL~ 78 (126)
++||+++.||+|++++++|+++|++|+.+.++...... .++.+.+|.+++|+| ..+|..++||.+|++||+
T Consensus 1 ~~ly~~~~~~~~~~~~~~l~~~~i~~~~~~~~~~~~~~--~~~~~~~~~~~~P~l---~~~~~~~~es~~I~~yl~ 71 (71)
T cd00570 1 LKLYYFPGSPRSLRVRLALEEKGLPYELVPVDLGEGEQ--EEFLALNPLGKVPVL---EDGGLVLTESLAILEYLA 71 (71)
T ss_pred CEEEeCCCCccHHHHHHHHHHcCCCcEEEEeCCCCCCC--HHHHhcCCCCCCCEE---EECCEEEEcHHHHHHHhC
Confidence 58999999999999999999999999999888654322 268899999999999 888999999999999984
No 52
>KOG4420|consensus
Probab=99.71 E-value=1.3e-17 Score=116.85 Aligned_cols=85 Identities=27% Similarity=0.419 Sum_probs=81.8
Q ss_pred eEEecCCCCchHHHHHHHHHHhCCCceEEEccCCCCCCCChhHhhhCCCCccceeeeecCCCeeeechHHHHHHHHHHhC
Q psy2059 3 IDFYYVPGSAPCRAVQLAAAQIGVPLNLKHTDLMKGEHLTPEFLKLNPQHTVPYSQQTNSQEYRREESRAIIAYLAEQYG 82 (126)
Q Consensus 3 ~~Ly~~~~s~~~~~v~~~l~~~gi~~~~~~v~~~~~~~~~~~~~~~~p~~~vP~L~~~~~~~~~l~eS~aI~~yL~~~~~ 82 (126)
+.||+++.|-.++|||++++|+||+++...|++..+++..++|.++||.|.|||| ++++.+|.++.-|++|+++.+.
T Consensus 27 ~vLyhhpysf~sQkVrlvi~EK~id~~~y~V~l~~geh~epwFmrlNp~gevPVl---~~g~~II~d~tqIIdYvErtf~ 103 (325)
T KOG4420|consen 27 LVLYHHPYSFSSQKVRLVIAEKGIDCEEYDVSLPQGEHKEPWFMRLNPGGEVPVL---IHGDNIISDYTQIIDYVERTFT 103 (325)
T ss_pred ceeeecCcccccceeeeehhhcccccceeeccCccccccCchheecCCCCCCceE---ecCCeecccHHHHHHHHHHhhc
Confidence 7899999999999999999999999999999999999999999999999999999 9999999999999999999998
Q ss_pred CCCCCCCC
Q psy2059 83 KDDSLYPK 90 (126)
Q Consensus 83 ~~~~l~p~ 90 (126)
++..|.|+
T Consensus 104 ger~l~pe 111 (325)
T KOG4420|consen 104 GERVLMPE 111 (325)
T ss_pred cccccccc
Confidence 87778885
No 53
>KOG1695|consensus
Probab=99.71 E-value=1.2e-16 Score=110.26 Aligned_cols=98 Identities=21% Similarity=0.224 Sum_probs=85.8
Q ss_pred Ce-eEEecCCCCchHHHHHHHHHHhCCCceEEEccCCCCCCCChhHhhhCCCCccceeeeecCCCeeeechHHHHHHHHH
Q psy2059 1 MT-IDFYYVPGSAPCRAVQLAAAQIGVPLNLKHTDLMKGEHLTPEFLKLNPQHTVPYSQQTNSQEYRREESRAIIAYLAE 79 (126)
Q Consensus 1 M~-~~Ly~~~~s~~~~~v~~~l~~~gi~~~~~~v~~~~~~~~~~~~~~~~p~~~vP~L~~~~~~~~~l~eS~aI~~yL~~ 79 (126)
|+ ++|+++...+.+..+|++++..|++||.+.+..... .++.....|+|++|+| ..||..|.+|.||++||++
T Consensus 1 m~~ykL~Yf~~RG~ae~iR~lf~~a~v~fEd~r~~~~~~---w~~~K~~~pfgqlP~l---~vDg~~i~QS~AI~RyLAr 74 (206)
T KOG1695|consen 1 MPPYKLTYFNIRGLAEPIRLLFAYAGVSFEDKRITMEDA---WEELKDKMPFGQLPVL---EVDGKKLVQSRAILRYLAR 74 (206)
T ss_pred CCceEEEecCcchhHHHHHHHHHhcCCCcceeeeccccc---hhhhcccCCCCCCCEE---eECCEeeccHHHHHHHHHH
Confidence 55 899999999999999999999999999988876542 4455556899999999 9999999999999999999
Q ss_pred HhCCCCCCCCCCHHHHHHHHHHHhhhccc
Q psy2059 80 QYGKDDSLYPKDPKARGIVNQRLYFDIGT 108 (126)
Q Consensus 80 ~~~~~~~l~p~~~~~~~~~~~wl~~~~~~ 108 (126)
+++ +.+.++.++++++...+....-
T Consensus 75 k~g----l~Gkt~~E~a~vD~i~d~~~D~ 99 (206)
T KOG1695|consen 75 KFG----LAGKTEEEEAWVDMIVDQFKDF 99 (206)
T ss_pred HhC----cCCCCHHHHHHHHHHHHhhhhH
Confidence 998 8889999999998877765543
No 54
>cd03054 GST_N_Metaxin GST_N family, Metaxin subfamily; composed of metaxins and related proteins. Metaxin 1 is a component of a preprotein import complex of the mitochondrial outer membrane. It extends to the cytosol and is anchored to the mitochondrial membrane through its C-terminal domain. In mice, metaxin is required for embryonic development. In humans, alterations in the metaxin gene may be associated with Gaucher disease. Metaxin 2 binds to metaxin 1 and may also play a role in protein translocation into the mitochondria. Genome sequencing shows that a third metaxin gene also exists in zebrafish, Xenopus, chicken and mammals. Sequence analysis suggests that all three metaxins share a common ancestry and that they possess similarity to GSTs. Also included in the subfamily are uncharacterized proteins with similarity to metaxins, including a novel GST from Rhodococcus with toluene o-monooxygenase and glutamylcysteine synthetase activities.
Probab=99.66 E-value=4.1e-16 Score=91.00 Aligned_cols=65 Identities=20% Similarity=0.339 Sum_probs=57.2
Q ss_pred eEEecCC-------CCchHHHHHHHHHHhCCCceEEEccCCCCCCCChhHhhhCCCCccceeeeecCCCeeeechHHHHH
Q psy2059 3 IDFYYVP-------GSAPCRAVQLAAAQIGVPLNLKHTDLMKGEHLTPEFLKLNPQHTVPYSQQTNSQEYRREESRAIIA 75 (126)
Q Consensus 3 ~~Ly~~~-------~s~~~~~v~~~l~~~gi~~~~~~v~~~~~~~~~~~~~~~~p~~~vP~L~~~~~~~~~l~eS~aI~~ 75 (126)
+.||.++ .||+|++++++|+++|++|+.+.++.. ..||.|++|+| +++|..++||.+|++
T Consensus 1 ~~L~~~~~~~~~~s~sp~~~~v~~~L~~~~i~~~~~~~~~~----------~~~p~g~vP~l---~~~g~~l~es~~I~~ 67 (72)
T cd03054 1 LELYQWGRAFGLPSLSPECLKVETYLRMAGIPYEVVFSSNP----------WRSPTGKLPFL---ELNGEKIADSEKIIE 67 (72)
T ss_pred CEEEEeCCCCCCCCCCHHHHHHHHHHHhCCCceEEEecCCc----------ccCCCcccCEE---EECCEEEcCHHHHHH
Confidence 3577776 799999999999999999999888652 27899999999 888999999999999
Q ss_pred HHHHH
Q psy2059 76 YLAEQ 80 (126)
Q Consensus 76 yL~~~ 80 (126)
||+++
T Consensus 68 yL~~~ 72 (72)
T cd03054 68 YLKKK 72 (72)
T ss_pred HHhhC
Confidence 99873
No 55
>PLN02907 glutamate-tRNA ligase
Probab=99.61 E-value=5.5e-15 Score=117.91 Aligned_cols=88 Identities=22% Similarity=0.256 Sum_probs=77.9
Q ss_pred CeeEEecCCCCchHHHHHHHHHHhCCCceEEEccCCCCCCCChhHhhhCCCCccceeeeecCCCeeeechHHHHHHHHHH
Q psy2059 1 MTIDFYYVPGSAPCRAVQLAAAQIGVPLNLKHTDLMKGEHLTPEFLKLNPQHTVPYSQQTNSQEYRREESRAIIAYLAEQ 80 (126)
Q Consensus 1 M~~~Ly~~~~s~~~~~v~~~l~~~gi~~~~~~v~~~~~~~~~~~~~~~~p~~~vP~L~~~~~~~~~l~eS~aI~~yL~~~ 80 (126)
|+++||+.+.++ +.++.++|++.|++|+.+. .+|.|+||+|+ .+||..|+||.||++||++.
T Consensus 1 ~~~kLy~~~~S~-~~~v~~~L~~lgv~~e~~~---------------~~p~GkVPvLv--~ddG~~L~ES~AIl~YLa~~ 62 (722)
T PLN02907 1 MEAKLSFPPDSP-PLAVIAAAKVAGVPLTIDP---------------SLKSGSAPTLL--FSSGEKLTGTNVLLRYIARS 62 (722)
T ss_pred CeEEEEECCCCC-hHHHHHHHHHcCCCcEEee---------------cCCCCCCcEEE--ECCCCEEECHHHHHHHHHHh
Confidence 789999999886 7789999999999998753 25899999993 36899999999999999999
Q ss_pred hCCCCCCCCCCHHHHHHHHHHHhhhcc
Q psy2059 81 YGKDDSLYPKDPKARGIVNQRLYFDIG 107 (126)
Q Consensus 81 ~~~~~~l~p~~~~~~~~~~~wl~~~~~ 107 (126)
++... |+|.++.+++++++|+.|..+
T Consensus 63 ~p~~~-L~p~d~~erAqV~qWL~~~~~ 88 (722)
T PLN02907 63 ASLPG-FYGQDAFESSQVDEWLDYAPT 88 (722)
T ss_pred CCCcC-CCCCCHHHHHHHHHHHHHHhh
Confidence 97665 999999999999999999765
No 56
>COG2999 GrxB Glutaredoxin 2 [Posttranslational modification, protein turnover, chaperones]
Probab=99.52 E-value=2.4e-14 Score=95.54 Aligned_cols=93 Identities=23% Similarity=0.275 Sum_probs=72.7
Q ss_pred eEEecCCCCchHHHHHHHHHHhCCCceEEEccCCCCCCCChhHhhhCCCCccceeeeecCCCeeeechHHHHHHHHHHhC
Q psy2059 3 IDFYYVPGSAPCRAVQLAAAQIGVPLNLKHTDLMKGEHLTPEFLKLNPQHTVPYSQQTNSQEYRREESRAIIAYLAEQYG 82 (126)
Q Consensus 3 ~~Ly~~~~s~~~~~v~~~l~~~gi~~~~~~v~~~~~~~~~~~~~~~~p~~~vP~L~~~~~~~~~l~eS~aI~~yL~~~~~ 82 (126)
|+||-+.+||+|.|+|+++..+|||++.+.....+.+. + .++-...+||+|| .+||..+.||..|++|+++.++
T Consensus 1 MkLYIYdHCPfcvrarmi~Gl~nipve~~vL~nDDe~T--p--~rmiG~KqVPiL~--Kedg~~m~ESlDIV~y~d~~~~ 74 (215)
T COG2999 1 MKLYIYDHCPFCVRARMIFGLKNIPVELHVLLNDDEET--P--IRMIGQKQVPILQ--KEDGRAMPESLDIVHYVDELDG 74 (215)
T ss_pred CceeEeccChHHHHHHHHhhccCCChhhheeccCcccC--h--hhhhcccccceEE--ccccccchhhhHHHHHHHHhcC
Confidence 68999999999999999999999999988776654222 1 2444567899998 8999999999999999999988
Q ss_pred CCCCCCCCCHHHHHHHHHHHhhh
Q psy2059 83 KDDSLYPKDPKARGIVNQRLYFD 105 (126)
Q Consensus 83 ~~~~l~p~~~~~~~~~~~wl~~~ 105 (126)
++ +. +..-+..++.|+.-.
T Consensus 75 ~~--~l--t~~~~pai~~wlrkv 93 (215)
T COG2999 75 KP--LL--TGKVRPAIEAWLRKV 93 (215)
T ss_pred ch--hh--ccCcCHHHHHHHHHh
Confidence 65 22 223345666776653
No 57
>cd03079 GST_N_Metaxin2 GST_N family, Metaxin subfamily, Metaxin 2; a metaxin 1 binding protein identified through a yeast two-hybrid system using metaxin 1 as the bait. Metaxin 2 shares sequence similarity with metaxin 1 but does not contain a C-terminal mitochondrial outer membrane signal-anchor domain. It associates with mitochondrial membranes through its interaction with metaxin 1, which is a component of the mitochondrial preprotein import complex of the outer membrane. The biological function of metaxin 2 is unknown. It is likely that it also plays a role in protein translocation into the mitochondria. However, this has not been experimentally validated. In a recent proteomics study, it has been shown that metaxin 2 is overexpressed in response to lipopolysaccharide-induced liver injury.
Probab=99.46 E-value=2.9e-13 Score=79.35 Aligned_cols=60 Identities=23% Similarity=0.414 Sum_probs=49.0
Q ss_pred CCCchHHHHHHHHHHhCCCceEEEccCCCCCCCChhHhhhCCCCccceeeeecCCCeeeechHHHHHHHHHH
Q psy2059 9 PGSAPCRAVQLAAAQIGVPLNLKHTDLMKGEHLTPEFLKLNPQHTVPYSQQTNSQEYRREESRAIIAYLAEQ 80 (126)
Q Consensus 9 ~~s~~~~~v~~~l~~~gi~~~~~~v~~~~~~~~~~~~~~~~p~~~vP~L~~~~~~~~~l~eS~aI~~yL~~~ 80 (126)
+.+++|.|++++|++.|+||+.+.. .. .+ ..+|.|+||+| ++||.+|+||.||+.||+++
T Consensus 15 ~~~~~~~kv~~~L~elglpye~~~~--~~-----~~--~~~P~GkVP~L---~~dg~vI~eS~aIl~yL~~~ 74 (74)
T cd03079 15 PDNASCLAVQTFLKMCNLPFNVRCR--AN-----AE--FMSPSGKVPFI---RVGNQIVSEFGPIVQFVEAK 74 (74)
T ss_pred CCCCCHHHHHHHHHHcCCCcEEEec--CC-----cc--ccCCCCcccEE---EECCEEEeCHHHHHHHHhcC
Confidence 3566899999999999999998732 21 11 25678999999 88999999999999999863
No 58
>TIGR02190 GlrX-dom Glutaredoxin-family domain. This C-terminal domain with homology to glutaredoxin is fused to an N-terminal peroxiredoxin-like domain.
Probab=99.26 E-value=2.3e-11 Score=72.23 Aligned_cols=71 Identities=17% Similarity=0.132 Sum_probs=61.2
Q ss_pred eeEEecCCCCchHHHHHHHHHHhCCCceEEEccCCCCCCCChhHhhhCCCCccceeeeecCCCeeeechHHHHHHHH
Q psy2059 2 TIDFYYVPGSAPCRAVQLAAAQIGVPLNLKHTDLMKGEHLTPEFLKLNPQHTVPYSQQTNSQEYRREESRAIIAYLA 78 (126)
Q Consensus 2 ~~~Ly~~~~s~~~~~v~~~l~~~gi~~~~~~v~~~~~~~~~~~~~~~~p~~~vP~L~~~~~~~~~l~eS~aI~~yL~ 78 (126)
.++||+.+.||+|.+++.+|+.+|++|+.+.++-.. ...++...++..++|++ ..+|..+.++..|.+||+
T Consensus 9 ~V~ly~~~~Cp~C~~ak~~L~~~gi~y~~idi~~~~---~~~~~~~~~g~~~vP~i---~i~g~~igG~~~l~~~l~ 79 (79)
T TIGR02190 9 SVVVFTKPGCPFCAKAKATLKEKGYDFEEIPLGNDA---RGRSLRAVTGATTVPQV---FIGGKLIGGSDELEAYLA 79 (79)
T ss_pred CEEEEECCCCHhHHHHHHHHHHcCCCcEEEECCCCh---HHHHHHHHHCCCCcCeE---EECCEEEcCHHHHHHHhC
Confidence 489999999999999999999999999987775431 23566677888999999 889999999999999984
No 59
>PRK10638 glutaredoxin 3; Provisional
Probab=99.16 E-value=1.4e-10 Score=69.39 Aligned_cols=73 Identities=18% Similarity=0.146 Sum_probs=62.6
Q ss_pred Ce-eEEecCCCCchHHHHHHHHHHhCCCceEEEccCCCCCCCChhHhhhCCCCccceeeeecCCCeeeechHHHHHHHH
Q psy2059 1 MT-IDFYYVPGSAPCRAVQLAAAQIGVPLNLKHTDLMKGEHLTPEFLKLNPQHTVPYSQQTNSQEYRREESRAIIAYLA 78 (126)
Q Consensus 1 M~-~~Ly~~~~s~~~~~v~~~l~~~gi~~~~~~v~~~~~~~~~~~~~~~~p~~~vP~L~~~~~~~~~l~eS~aI~~yL~ 78 (126)
|+ +++|..+.||+|.+++.+|+++|++|+.+.++... ...+++.+.++..++|++ ..||..+.....+..+-.
T Consensus 1 m~~v~ly~~~~Cp~C~~a~~~L~~~gi~y~~~dv~~~~--~~~~~l~~~~g~~~vP~i---~~~g~~igG~~~~~~~~~ 74 (83)
T PRK10638 1 MANVEIYTKATCPFCHRAKALLNSKGVSFQEIPIDGDA--AKREEMIKRSGRTTVPQI---FIDAQHIGGCDDLYALDA 74 (83)
T ss_pred CCcEEEEECCCChhHHHHHHHHHHcCCCcEEEECCCCH--HHHHHHHHHhCCCCcCEE---EECCEEEeCHHHHHHHHH
Confidence 65 89999999999999999999999999998886432 234678899999999999 889999999988877654
No 60
>KOG1422|consensus
Probab=99.10 E-value=8.6e-10 Score=75.58 Aligned_cols=71 Identities=21% Similarity=0.318 Sum_probs=66.5
Q ss_pred CCCchHHHHHHHHHHhCCCceEEEccCCCCCCCChhHhhhCCCCccceeeeecCCCeeeechHHHHHHHHHHhCCCC
Q psy2059 9 PGSAPCRAVQLAAAQIGVPLNLKHTDLMKGEHLTPEFLKLNPQHTVPYSQQTNSQEYRREESRAIIAYLAEQYGKDD 85 (126)
Q Consensus 9 ~~s~~~~~v~~~l~~~gi~~~~~~v~~~~~~~~~~~~~~~~p~~~vP~L~~~~~~~~~l~eS~aI~~yL~~~~~~~~ 85 (126)
..||+|+++.+.|.++|++|....||+.+ +.++|+++.|.|++|+| ..|+.+.+||..|-++|++.++.+.
T Consensus 19 Gdcpf~qr~~m~L~~k~~~f~vttVd~~~---kp~~f~~~sp~~~~P~l---~~d~~~~tDs~~Ie~~Lee~l~~p~ 89 (221)
T KOG1422|consen 19 GDCPFCQRLFMTLELKGVPFKVTTVDLSR---KPEWFLDISPGGKPPVL---KFDEKWVTDSDKIEEFLEEKLPPPK 89 (221)
T ss_pred CCChhHHHHHHHHHHcCCCceEEEeecCC---CcHHHHhhCCCCCCCeE---EeCCceeccHHHHHHHHHHhcCCCC
Confidence 46999999999999999999999999976 77899999999999999 9999999999999999999999774
No 61
>cd03078 GST_N_Metaxin1_like GST_N family, Metaxin subfamily, Metaxin 1-like proteins; composed of metaxins 1 and 3, and similar proteins including Tom37 from fungi. Mammalian metaxin (or metaxin 1) and the fungal protein Tom37 are components of preprotein import complexes of the mitochondrial outer membrane. Metaxin extends to the cytosol and is anchored to the mitochondrial membrane through its C-terminal domain. In mice, metaxin is required for embryonic development. Like the murine gene, the human metaxin gene is located downstream to the glucocerebrosidase (GBA) pseudogene and is convergently transcribed. Inherited deficiency of GBA results in Gaucher disease, which presents many diverse clinical phenotypes. Alterations in the metaxin gene, in addition to GBA mutations, may be associated with Gaucher disease. Genome sequencing shows that a third metaxin gene also exists in zebrafish, Xenopus, chicken and mammals.
Probab=99.06 E-value=8.2e-10 Score=64.64 Aligned_cols=58 Identities=22% Similarity=0.277 Sum_probs=49.6
Q ss_pred CCchHHHHHHHHHHhCCCceEEEccCCCCCCCChhHhhhCCCCccceeeeecCCCeeeechHHHHHHHHHH
Q psy2059 10 GSAPCRAVQLAAAQIGVPLNLKHTDLMKGEHLTPEFLKLNPQHTVPYSQQTNSQEYRREESRAIIAYLAEQ 80 (126)
Q Consensus 10 ~s~~~~~v~~~l~~~gi~~~~~~v~~~~~~~~~~~~~~~~p~~~vP~L~~~~~~~~~l~eS~aI~~yL~~~ 80 (126)
.||+|.|+.+.|+..|++|+.+... + -..+|.|++|+| +++|..+.+|..|++||.++
T Consensus 15 ~sp~clk~~~~Lr~~~~~~~v~~~~-------n---~~~sp~gkLP~l---~~~~~~i~d~~~Ii~~L~~~ 72 (73)
T cd03078 15 VDPECLAVLAYLKFAGAPLKVVPSN-------N---PWRSPTGKLPAL---LTSGTKISGPEKIIEYLRKQ 72 (73)
T ss_pred CCHHHHHHHHHHHcCCCCEEEEecC-------C---CCCCCCCccCEE---EECCEEecChHHHHHHHHHc
Confidence 4789999999999999999876431 1 145789999999 89999999999999999864
No 62
>cd03029 GRX_hybridPRX5 Glutaredoxin (GRX) family, PRX5 hybrid subfamily; composed of hybrid proteins containing peroxiredoxin (PRX) and GRX domains, which is found in some pathogenic bacteria and cyanobacteria. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins. PRX-GRX hybrid proteins from Haemophilus influenza and Neisseria meningitis exhibit GSH-dependent peroxidase activity. The flow of reducing equivalents in the catalytic cycle of the hybrid protein goes from NADPH - GSH reductase - GSH - GRX domain of hybrid - PRX domain of hybrid - peroxide substrate.
Probab=99.05 E-value=1.1e-09 Score=63.60 Aligned_cols=71 Identities=15% Similarity=0.155 Sum_probs=59.7
Q ss_pred eeEEecCCCCchHHHHHHHHHHhCCCceEEEccCCCCCCCChhHhhhCCCCccceeeeecCCCeeeechHHHHHHHH
Q psy2059 2 TIDFYYVPGSAPCRAVQLAAAQIGVPLNLKHTDLMKGEHLTPEFLKLNPQHTVPYSQQTNSQEYRREESRAIIAYLA 78 (126)
Q Consensus 2 ~~~Ly~~~~s~~~~~v~~~l~~~gi~~~~~~v~~~~~~~~~~~~~~~~p~~~vP~L~~~~~~~~~l~eS~aI~~yL~ 78 (126)
++++|..+.||+|.+++.+|+..|++|+.+.++-.. ...++...+...++|++ ..||..+.++..|.+||+
T Consensus 2 ~v~lys~~~Cp~C~~ak~~L~~~~i~~~~~~v~~~~---~~~~~~~~~g~~~vP~i---fi~g~~igg~~~l~~~l~ 72 (72)
T cd03029 2 SVSLFTKPGCPFCARAKAALQENGISYEEIPLGKDI---TGRSLRAVTGAMTVPQV---FIDGELIGGSDDLEKYFA 72 (72)
T ss_pred eEEEEECCCCHHHHHHHHHHHHcCCCcEEEECCCCh---hHHHHHHHhCCCCcCeE---EECCEEEeCHHHHHHHhC
Confidence 378999999999999999999999999988776432 23445566778899999 888999999999999974
No 63
>KOG3029|consensus
Probab=98.96 E-value=3.5e-09 Score=75.72 Aligned_cols=69 Identities=17% Similarity=0.188 Sum_probs=57.7
Q ss_pred eEEecCCCCchHHHHHHHHHHhCCCceEEEccCCCCCCCChhHhhhCCCCccceeeeecCCCeeeechHHHHHHHHH
Q psy2059 3 IDFYYVPGSAPCRAVQLAAAQIGVPLNLKHTDLMKGEHLTPEFLKLNPQHTVPYSQQTNSQEYRREESRAIIAYLAE 79 (126)
Q Consensus 3 ~~Ly~~~~s~~~~~v~~~l~~~gi~~~~~~v~~~~~~~~~~~~~~~~p~~~vP~L~~~~~~~~~l~eS~aI~~yL~~ 79 (126)
++||.+..||+|.|||..|.+.|++|++++|++-. ..-++-+...|||+| ..+|..+.||.+|+.-|+.
T Consensus 91 l~LyQyetCPFCcKVrAFLDyhgisY~VVEVnpV~-----r~eIk~SsykKVPil---~~~Geqm~dSsvIIs~laT 159 (370)
T KOG3029|consen 91 LVLYQYETCPFCCKVRAFLDYHGISYAVVEVNPVL-----RQEIKWSSYKKVPIL---LIRGEQMVDSSVIISLLAT 159 (370)
T ss_pred EEEEeeccCchHHHHHHHHhhcCCceEEEEecchh-----hhhccccccccccEE---EeccceechhHHHHHHHHH
Confidence 78999999999999999999999999999998753 122455678899999 6656669999999988754
No 64
>cd03027 GRX_DEP Glutaredoxin (GRX) family, Dishevelled, Egl-10, and Pleckstrin (DEP) subfamily; composed of uncharacterized proteins containing a GRX domain and additional domains DEP and DUF547, both of which have unknown functions. GRX is a glutathione (GSH) dependent reductase containing a redox active CXXC motif in a TRX fold. It has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. By altering the redox state of target proteins, GRX is involved in many cellular functions.
Probab=98.92 E-value=4.2e-09 Score=61.37 Aligned_cols=68 Identities=19% Similarity=0.219 Sum_probs=56.1
Q ss_pred eEEecCCCCchHHHHHHHHHHhCCCceEEEccCCCCCCCChhHhhhCCCCccceeeeecCCCeeeechHHHHH
Q psy2059 3 IDFYYVPGSAPCRAVQLAAAQIGVPLNLKHTDLMKGEHLTPEFLKLNPQHTVPYSQQTNSQEYRREESRAIIA 75 (126)
Q Consensus 3 ~~Ly~~~~s~~~~~v~~~l~~~gi~~~~~~v~~~~~~~~~~~~~~~~p~~~vP~L~~~~~~~~~l~eS~aI~~ 75 (126)
++||+.+.||+|++++.+|+++|++|+.+.++-. ....+++.+.++..++|++ ..+|..+..-..+.+
T Consensus 3 v~ly~~~~C~~C~ka~~~L~~~gi~~~~~di~~~--~~~~~el~~~~g~~~vP~v---~i~~~~iGg~~~~~~ 70 (73)
T cd03027 3 VTIYSRLGCEDCTAVRLFLREKGLPYVEINIDIF--PERKAELEERTGSSVVPQI---FFNEKLVGGLTDLKS 70 (73)
T ss_pred EEEEecCCChhHHHHHHHHHHCCCceEEEECCCC--HHHHHHHHHHhCCCCcCEE---EECCEEEeCHHHHHh
Confidence 6899999999999999999999999998776532 3345678899999999999 888888876655443
No 65
>PRK10329 glutaredoxin-like protein; Provisional
Probab=98.87 E-value=8.6e-09 Score=61.47 Aligned_cols=60 Identities=18% Similarity=0.274 Sum_probs=46.7
Q ss_pred CeeEEecCCCCchHHHHHHHHHHhCCCceEEEccCCCCCCCChhHhhhCCCCccceeeeecCCCee
Q psy2059 1 MTIDFYYVPGSAPCRAVQLAAAQIGVPLNLKHTDLMKGEHLTPEFLKLNPQHTVPYSQQTNSQEYR 66 (126)
Q Consensus 1 M~~~Ly~~~~s~~~~~v~~~l~~~gi~~~~~~v~~~~~~~~~~~~~~~~p~~~vP~L~~~~~~~~~ 66 (126)
|.+++|..+.||+|.+++.+|+++|++|+.+.++-.. ...+.+..++..++|++ ..+|..
T Consensus 1 ~~v~lYt~~~Cp~C~~ak~~L~~~gI~~~~idi~~~~---~~~~~~~~~g~~~vPvv---~i~~~~ 60 (81)
T PRK10329 1 MRITIYTRNDCVQCHATKRAMESRGFDFEMINVDRVP---EAAETLRAQGFRQLPVV---IAGDLS 60 (81)
T ss_pred CEEEEEeCCCCHhHHHHHHHHHHCCCceEEEECCCCH---HHHHHHHHcCCCCcCEE---EECCEE
Confidence 6789999999999999999999999999988776321 11223345688899999 655543
No 66
>cd02066 GRX_family Glutaredoxin (GRX) family; composed of GRX, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known including human GRX1 and GRX2, as well as E. coli GRX1 and GRX3, which
Probab=98.83 E-value=1.3e-08 Score=58.14 Aligned_cols=70 Identities=13% Similarity=0.060 Sum_probs=57.9
Q ss_pred eeEEecCCCCchHHHHHHHHHHhCCCceEEEccCCCCCCCChhHhhhCCCCccceeeeecCCCeeeechHHHHHH
Q psy2059 2 TIDFYYVPGSAPCRAVQLAAAQIGVPLNLKHTDLMKGEHLTPEFLKLNPQHTVPYSQQTNSQEYRREESRAIIAY 76 (126)
Q Consensus 2 ~~~Ly~~~~s~~~~~v~~~l~~~gi~~~~~~v~~~~~~~~~~~~~~~~p~~~vP~L~~~~~~~~~l~eS~aI~~y 76 (126)
++++|+.+.||+|++++.+|+.+|++|+.+.++-. .....++.+.++..++|++ ..+|..+.++..|.+.
T Consensus 1 ~v~ly~~~~Cp~C~~~~~~L~~~~i~~~~~di~~~--~~~~~~l~~~~~~~~~P~~---~~~~~~igg~~~~~~~ 70 (72)
T cd02066 1 KVVVFSKSTCPYCKRAKRLLESLGIEFEEIDILED--GELREELKELSGWPTVPQI---FINGEFIGGYDDLKAL 70 (72)
T ss_pred CEEEEECCCCHHHHHHHHHHHHcCCcEEEEECCCC--HHHHHHHHHHhCCCCcCEE---EECCEEEecHHHHHHh
Confidence 36899999999999999999999999987666432 2244667788999999999 8899999999887653
No 67
>TIGR02196 GlrX_YruB Glutaredoxin-like protein, YruB-family. This glutaredoxin-like protein family contains the conserved CxxC motif and includes the Clostridium pasteurianum protein YruB which has been cloned from a rubredoxin operon. Somewhat related to NrdH, it is unknown whether this protein actually interacts with glutathione/glutathione reducatase, or, like NrdH, some other reductant system.
Probab=98.83 E-value=1.3e-08 Score=58.49 Aligned_cols=70 Identities=17% Similarity=0.199 Sum_probs=54.2
Q ss_pred eEEecCCCCchHHHHHHHHHHhCCCceEEEccCCCCCCCChhHhhhCCCCccceeeeecCCCeee--echHHHHHHH
Q psy2059 3 IDFYYVPGSAPCRAVQLAAAQIGVPLNLKHTDLMKGEHLTPEFLKLNPQHTVPYSQQTNSQEYRR--EESRAIIAYL 77 (126)
Q Consensus 3 ~~Ly~~~~s~~~~~v~~~l~~~gi~~~~~~v~~~~~~~~~~~~~~~~p~~~vP~L~~~~~~~~~l--~eS~aI~~yL 77 (126)
++||+.+.|++|++++.+|++.|++|+.+.++-. ....+++.+.++...+|++ ..+|..+ .++.+|.++|
T Consensus 2 i~lf~~~~C~~C~~~~~~l~~~~i~~~~vdi~~~--~~~~~~~~~~~~~~~vP~~---~~~~~~~~g~~~~~i~~~i 73 (74)
T TIGR02196 2 VKVYTTPWCPPCKKAKEYLTSKGIAFEEIDVEKD--SAAREEVLKVLGQRGVPVI---VIGHKIIVGFDPEKLDQLL 73 (74)
T ss_pred EEEEcCCCChhHHHHHHHHHHCCCeEEEEeccCC--HHHHHHHHHHhCCCcccEE---EECCEEEeeCCHHHHHHHh
Confidence 6899999999999999999999999987665432 2234567788999999999 6667766 4555665554
No 68
>cd02976 NrdH NrdH-redoxin (NrdH) family; NrdH is a small monomeric protein with a conserved redox active CXXC motif within a TRX fold, characterized by a glutaredoxin (GRX)-like sequence and TRX-like activity profile. In vitro, it displays protein disulfide reductase activity that is dependent on TRX reductase, not glutathione (GSH). It is part of the NrdHIEF operon, where NrdEF codes for class Ib ribonucleotide reductase (RNR-Ib), an efficient enzyme at low oxygen levels. Under these conditions when GSH is mostly conjugated to spermidine, NrdH can still function and act as a hydrogen donor for RNR-Ib. It has been suggested that the NrdHEF system may be the oldest RNR reducing system, capable of functioning in a microaerophilic environment, where GSH was not yet available. NrdH from Corynebacterium ammoniagenes can form domain-swapped dimers, although it is unknown if this happens in vivo. Domain-swapped dimerization, which results in the blocking of the TRX reductase binding site, cou
Probab=98.81 E-value=1.2e-08 Score=58.59 Aligned_cols=62 Identities=21% Similarity=0.274 Sum_probs=51.0
Q ss_pred eEEecCCCCchHHHHHHHHHHhCCCceEEEccCCCCCCCChhHhhhCCCCccceeeeecCCCeeeec
Q psy2059 3 IDFYYVPGSAPCRAVQLAAAQIGVPLNLKHTDLMKGEHLTPEFLKLNPQHTVPYSQQTNSQEYRREE 69 (126)
Q Consensus 3 ~~Ly~~~~s~~~~~v~~~l~~~gi~~~~~~v~~~~~~~~~~~~~~~~p~~~vP~L~~~~~~~~~l~e 69 (126)
+++|+.+.|++|.+++.+|+++|++|+.+.++.. ....+++.+.||.+++|++ ..+|..+.+
T Consensus 2 v~l~~~~~c~~c~~~~~~l~~~~i~~~~~~i~~~--~~~~~~~~~~~~~~~vP~i---~~~~~~i~g 63 (73)
T cd02976 2 VTVYTKPDCPYCKATKRFLDERGIPFEEVDVDED--PEALEELKKLNGYRSVPVV---VIGDEHLSG 63 (73)
T ss_pred EEEEeCCCChhHHHHHHHHHHCCCCeEEEeCCCC--HHHHHHHHHHcCCcccCEE---EECCEEEec
Confidence 6899999999999999999999999988777542 2345678888999999999 767766554
No 69
>COG0695 GrxC Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]
Probab=98.75 E-value=3.5e-08 Score=58.70 Aligned_cols=72 Identities=19% Similarity=0.186 Sum_probs=55.1
Q ss_pred CeeEEecCCCCchHHHHHHHHHHhCCCceEEEccCCCCCCCChhHh-hhCCCCccceeeeecCCCeeeechHHHHHH
Q psy2059 1 MTIDFYYVPGSAPCRAVQLAAAQIGVPLNLKHTDLMKGEHLTPEFL-KLNPQHTVPYSQQTNSQEYRREESRAIIAY 76 (126)
Q Consensus 1 M~~~Ly~~~~s~~~~~v~~~l~~~gi~~~~~~v~~~~~~~~~~~~~-~~~p~~~vP~L~~~~~~~~~l~eS~aI~~y 76 (126)
|++++|..+.||+|.+++-+|..+|++|+.+.++....+ ...++. ..++..++|++ ..||..+.....+-++
T Consensus 1 ~~v~iyt~~~CPyC~~ak~~L~~~g~~~~~i~~~~~~~~-~~~~~~~~~~g~~tvP~I---~i~~~~igg~~d~~~~ 73 (80)
T COG0695 1 ANVTIYTKPGCPYCKRAKRLLDRKGVDYEEIDVDDDEPE-EAREMVKRGKGQRTVPQI---FIGGKHVGGCDDLDAL 73 (80)
T ss_pred CCEEEEECCCCchHHHHHHHHHHcCCCcEEEEecCCcHH-HHHHHHHHhCCCCCcCEE---EECCEEEeCcccHHHH
Confidence 568999999999999999999999999999888765431 223444 55589999999 8888777655444443
No 70
>TIGR02200 GlrX_actino Glutaredoxin-like protein. This family of glutaredoxin-like proteins is limited to the Actinobacteria and contains the conserved CxxC motif.
Probab=98.71 E-value=2.8e-08 Score=57.87 Aligned_cols=65 Identities=14% Similarity=0.177 Sum_probs=51.2
Q ss_pred eEEecCCCCchHHHHHHHHHHhCCCceEEEccCCCCCCCChhHhhhC-CCCccceeeeecCCCeeeechH
Q psy2059 3 IDFYYVPGSAPCRAVQLAAAQIGVPLNLKHTDLMKGEHLTPEFLKLN-PQHTVPYSQQTNSQEYRREESR 71 (126)
Q Consensus 3 ~~Ly~~~~s~~~~~v~~~l~~~gi~~~~~~v~~~~~~~~~~~~~~~~-p~~~vP~L~~~~~~~~~l~eS~ 71 (126)
++||+.+.|++|++++..|++.|++|+.+.++ ......+.+.++| +...+|+++ .++|..+.+..
T Consensus 2 v~ly~~~~C~~C~~~~~~L~~~~~~~~~idi~--~~~~~~~~~~~~~~~~~~vP~i~--~~~g~~l~~~~ 67 (77)
T TIGR02200 2 ITVYGTTWCGYCAQLMRTLDKLGAAYEWVDIE--EDEGAADRVVSVNNGNMTVPTVK--FADGSFLTNPS 67 (77)
T ss_pred EEEEECCCChhHHHHHHHHHHcCCceEEEeCc--CCHhHHHHHHHHhCCCceeCEEE--ECCCeEecCCC
Confidence 68999999999999999999999999876554 3333345666777 899999995 56787777553
No 71
>PRK11200 grxA glutaredoxin 1; Provisional
Probab=98.68 E-value=1.3e-07 Score=56.66 Aligned_cols=77 Identities=17% Similarity=0.157 Sum_probs=61.5
Q ss_pred CeeEEecCCCCchHHHHHHHHHH-----hCCCceEEEccCCCCCCCChhHhhhCCC--CccceeeeecCCCeeeechHHH
Q psy2059 1 MTIDFYYVPGSAPCRAVQLAAAQ-----IGVPLNLKHTDLMKGEHLTPEFLKLNPQ--HTVPYSQQTNSQEYRREESRAI 73 (126)
Q Consensus 1 M~~~Ly~~~~s~~~~~v~~~l~~-----~gi~~~~~~v~~~~~~~~~~~~~~~~p~--~~vP~L~~~~~~~~~l~eS~aI 73 (126)
|.+++|+.+.||+|.+++-+|+. .|++|+.+.++-.. ...+++...... ..+|++ ..||..+.+...|
T Consensus 1 m~v~iy~~~~C~~C~~a~~~L~~l~~~~~~i~~~~idi~~~~--~~~~el~~~~~~~~~~vP~i---fi~g~~igg~~~~ 75 (85)
T PRK11200 1 MFVVIFGRPGCPYCVRAKELAEKLSEERDDFDYRYVDIHAEG--ISKADLEKTVGKPVETVPQI---FVDQKHIGGCTDF 75 (85)
T ss_pred CEEEEEeCCCChhHHHHHHHHHhhcccccCCcEEEEECCCCh--HHHHHHHHHHCCCCCcCCEE---EECCEEEcCHHHH
Confidence 77999999999999999999999 89999887775421 112344444333 579999 8899999999999
Q ss_pred HHHHHHHhC
Q psy2059 74 IAYLAEQYG 82 (126)
Q Consensus 74 ~~yL~~~~~ 82 (126)
.+++.+.++
T Consensus 76 ~~~~~~~~~ 84 (85)
T PRK11200 76 EAYVKENLG 84 (85)
T ss_pred HHHHHHhcc
Confidence 999988764
No 72
>cd03418 GRX_GRXb_1_3_like Glutaredoxin (GRX) family, GRX bacterial class 1 and 3 (b_1_3)-like subfamily; composed of bacterial GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known i
Probab=98.66 E-value=9.6e-08 Score=55.56 Aligned_cols=71 Identities=17% Similarity=0.170 Sum_probs=55.8
Q ss_pred eEEecCCCCchHHHHHHHHHHhCCCceEEEccCCCCCCCChhHhhhCCCC-ccceeeeecCCCeeeechHHHHHHHH
Q psy2059 3 IDFYYVPGSAPCRAVQLAAAQIGVPLNLKHTDLMKGEHLTPEFLKLNPQH-TVPYSQQTNSQEYRREESRAIIAYLA 78 (126)
Q Consensus 3 ~~Ly~~~~s~~~~~v~~~l~~~gi~~~~~~v~~~~~~~~~~~~~~~~p~~-~vP~L~~~~~~~~~l~eS~aI~~yL~ 78 (126)
++||+.+.||+|.+++.+|+.+|++|+.+.++.. .....++....... .+|++ ..+|..+.+...+.++-.
T Consensus 2 i~ly~~~~Cp~C~~ak~~L~~~~i~~~~i~i~~~--~~~~~~~~~~~~~~~~vP~v---~i~g~~igg~~~~~~~~~ 73 (75)
T cd03418 2 VEIYTKPNCPYCVRAKALLDKKGVDYEEIDVDGD--PALREEMINRSGGRRTVPQI---FIGDVHIGGCDDLYALER 73 (75)
T ss_pred EEEEeCCCChHHHHHHHHHHHCCCcEEEEECCCC--HHHHHHHHHHhCCCCccCEE---EECCEEEeChHHHHHHHh
Confidence 6899999999999999999999999998877643 11234444555544 89999 888899998888877643
No 73
>TIGR02194 GlrX_NrdH Glutaredoxin-like protein NrdH. NrdH-redoxin is a representative of a class of small redox proteins that contain a conserved CXXC motif and are characterized by a glutaredoxin-like amino acid sequence and thioredoxin-like activity profile. Unlike other the glutaredoxins to which it is most closely related, NrdH aparrently does not interact with glutathione/glutathione reductase, but rather with thioredoxin reductase to catalyze the reduction of ribonucleotide reductase.
Probab=98.61 E-value=1.6e-07 Score=54.50 Aligned_cols=53 Identities=17% Similarity=0.258 Sum_probs=41.4
Q ss_pred eEEecCCCCchHHHHHHHHHHhCCCceEEEccCCCCCCCChhHhhhCCCCccceee
Q psy2059 3 IDFYYVPGSAPCRAVQLAAAQIGVPLNLKHTDLMKGEHLTPEFLKLNPQHTVPYSQ 58 (126)
Q Consensus 3 ~~Ly~~~~s~~~~~v~~~l~~~gi~~~~~~v~~~~~~~~~~~~~~~~p~~~vP~L~ 58 (126)
+++|+.+.||+|++++-+|+++|++|+.+.++-.. ...+.++.++...+|+++
T Consensus 1 v~ly~~~~Cp~C~~ak~~L~~~~i~~~~~di~~~~---~~~~~~~~~g~~~vP~v~ 53 (72)
T TIGR02194 1 ITVYSKNNCVQCKMTKKALEEHGIAFEEINIDEQP---EAIDYVKAQGFRQVPVIV 53 (72)
T ss_pred CEEEeCCCCHHHHHHHHHHHHCCCceEEEECCCCH---HHHHHHHHcCCcccCEEE
Confidence 58999999999999999999999999988775321 122333445777899993
No 74
>TIGR02181 GRX_bact Glutaredoxin, GrxC family. This family of glutaredoxins includes the E. coli protein GrxC (Grx3) which appears to have a secondary role in reducing ribonucleotide reductase (in the absence of GrxA) possibly indicating a role in the reduction of other protein disulfides.
Probab=98.58 E-value=1.9e-07 Score=54.98 Aligned_cols=72 Identities=18% Similarity=0.182 Sum_probs=58.5
Q ss_pred eEEecCCCCchHHHHHHHHHHhCCCceEEEccCCCCCCCChhHhhhCCCCccceeeeecCCCeeeechHHHHHHHHH
Q psy2059 3 IDFYYVPGSAPCRAVQLAAAQIGVPLNLKHTDLMKGEHLTPEFLKLNPQHTVPYSQQTNSQEYRREESRAIIAYLAE 79 (126)
Q Consensus 3 ~~Ly~~~~s~~~~~v~~~l~~~gi~~~~~~v~~~~~~~~~~~~~~~~p~~~vP~L~~~~~~~~~l~eS~aI~~yL~~ 79 (126)
+++|+.+.||+|.+++-+|+++|++|+.+.++.. .....++.+.+....+|++ ..+|..+.....+.++..+
T Consensus 1 v~ly~~~~Cp~C~~a~~~L~~~~i~~~~~di~~~--~~~~~~~~~~~g~~~vP~i---~i~g~~igg~~~~~~~~~~ 72 (79)
T TIGR02181 1 VTIYTKPYCPYCTRAKALLSSKGVTFTEIRVDGD--PALRDEMMQRSGRRTVPQI---FIGDVHVGGCDDLYALDRE 72 (79)
T ss_pred CEEEecCCChhHHHHHHHHHHcCCCcEEEEecCC--HHHHHHHHHHhCCCCcCEE---EECCEEEcChHHHHHHHHc
Confidence 4799999999999999999999999999887643 2234566677778899999 8888888888887776543
No 75
>TIGR02183 GRXA Glutaredoxin, GrxA family. This model includes the E. coli glyutaredoxin GrxA which appears to have primary responsibility for the reduction of ribonucleotide reductase.
Probab=98.52 E-value=5.4e-07 Score=54.17 Aligned_cols=75 Identities=13% Similarity=0.156 Sum_probs=56.6
Q ss_pred eEEecCCCCchHHHHHHHHHHhC-----CCceEEEccCCCCCCCChhHhhhCCC--CccceeeeecCCCeeeechHHHHH
Q psy2059 3 IDFYYVPGSAPCRAVQLAAAQIG-----VPLNLKHTDLMKGEHLTPEFLKLNPQ--HTVPYSQQTNSQEYRREESRAIIA 75 (126)
Q Consensus 3 ~~Ly~~~~s~~~~~v~~~l~~~g-----i~~~~~~v~~~~~~~~~~~~~~~~p~--~~vP~L~~~~~~~~~l~eS~aI~~ 75 (126)
+++|+.+.||+|.+++-+|+.++ ++|+.+.++-. .....++...... ..||++ ..||..+.++..|.+
T Consensus 2 V~vys~~~Cp~C~~ak~~L~~~~~~~~~i~~~~idi~~~--~~~~~~l~~~~g~~~~tVP~i---fi~g~~igG~~dl~~ 76 (86)
T TIGR02183 2 VVIFGRPGCPYCVRAKQLAEKLAIERADFEFRYIDIHAE--GISKADLEKTVGKPVETVPQI---FVDEKHVGGCTDFEQ 76 (86)
T ss_pred EEEEeCCCCccHHHHHHHHHHhCcccCCCcEEEEECCCC--HHHHHHHHHHhCCCCCCcCeE---EECCEEecCHHHHHH
Confidence 47999999999999999999985 45665555421 1113345444443 689999 889999999999999
Q ss_pred HHHHHhC
Q psy2059 76 YLAEQYG 82 (126)
Q Consensus 76 yL~~~~~ 82 (126)
++.+.++
T Consensus 77 ~~~~~~~ 83 (86)
T TIGR02183 77 LVKENFD 83 (86)
T ss_pred HHHhccc
Confidence 9988654
No 76
>KOG4244|consensus
Probab=98.50 E-value=9.2e-07 Score=62.88 Aligned_cols=87 Identities=15% Similarity=0.158 Sum_probs=68.6
Q ss_pred CCchHHHHHHHHHHhCCCceEEEccCCCCCCCChhHhhhCCCCccceeeeecCCCeeeechHHHHHHHHHHhCCCCCCCC
Q psy2059 10 GSAPCRAVQLAAAQIGVPLNLKHTDLMKGEHLTPEFLKLNPQHTVPYSQQTNSQEYRREESRAIIAYLAEQYGKDDSLYP 89 (126)
Q Consensus 10 ~s~~~~~v~~~l~~~gi~~~~~~v~~~~~~~~~~~~~~~~p~~~vP~L~~~~~~~~~l~eS~aI~~yL~~~~~~~~~l~p 89 (126)
.||+|.|+...|...+||||.+...+ ...+..|++|.+ +-+|..+.+|.-|...|.+.++-+.. +
T Consensus 60 LSPfClKvEt~lR~~~IpYE~~~~~~----------~~rSr~G~lPFI---ELNGe~iaDS~~I~~~L~~hf~~~~~-L- 124 (281)
T KOG4244|consen 60 LSPFCLKVETFLRAYDIPYEIVDCSL----------KRRSRNGTLPFI---ELNGEHIADSDLIEDRLRKHFKIPDD-L- 124 (281)
T ss_pred CChHHHHHHHHHHHhCCCceeccccc----------eeeccCCCcceE---EeCCeeccccHHHHHHHHHHcCCCCC-C-
Confidence 59999999999999999999765422 256789999999 99999999999999999999876542 3
Q ss_pred CCHHHHHHHHHHHhhhccccchh
Q psy2059 90 KDPKARGIVNQRLYFDIGTLYQR 112 (126)
Q Consensus 90 ~~~~~~~~~~~wl~~~~~~~~~~ 112 (126)
+++++++..+....+++++.-.
T Consensus 125 -~~e~~a~s~Al~rm~dnhL~~~ 146 (281)
T KOG4244|consen 125 -SAEQRAQSRALSRMADNHLFWI 146 (281)
T ss_pred -CHHHHHHHHHHHHHHHHHHHHH
Confidence 3667777766666665555433
No 77
>cd03419 GRX_GRXh_1_2_like Glutaredoxin (GRX) family, GRX human class 1 and 2 (h_1_2)-like subfamily; composed of proteins similar to human GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes
Probab=98.47 E-value=6.5e-07 Score=52.80 Aligned_cols=74 Identities=14% Similarity=0.121 Sum_probs=59.9
Q ss_pred eEEecCCCCchHHHHHHHHHHhCCCceEEEccCCCCC-CCChhHhhhCCCCccceeeeecCCCeeeechHHHHHHHHH
Q psy2059 3 IDFYYVPGSAPCRAVQLAAAQIGVPLNLKHTDLMKGE-HLTPEFLKLNPQHTVPYSQQTNSQEYRREESRAIIAYLAE 79 (126)
Q Consensus 3 ~~Ly~~~~s~~~~~v~~~l~~~gi~~~~~~v~~~~~~-~~~~~~~~~~p~~~vP~L~~~~~~~~~l~eS~aI~~yL~~ 79 (126)
+++|+.+.||+|.+++-+|++.+++|+...++..... ....++.+.+...++|++ ..+|..+.+...+.++..+
T Consensus 2 v~~y~~~~Cp~C~~~~~~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~~~P~v---~~~g~~igg~~~~~~~~~~ 76 (82)
T cd03419 2 VVVFSKSYCPYCKRAKSLLKELGVKPAVVELDQHEDGSEIQDYLQELTGQRTVPNV---FIGGKFIGGCDDLMALHKS 76 (82)
T ss_pred EEEEEcCCCHHHHHHHHHHHHcCCCcEEEEEeCCCChHHHHHHHHHHhCCCCCCeE---EECCEEEcCHHHHHHHHHc
Confidence 6899999999999999999999999998888765421 112344567777899999 8889999999998887664
No 78
>PF00462 Glutaredoxin: Glutaredoxin; InterPro: IPR002109 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This entry represents Glutaredoxin.; GO: 0009055 electron carrier activity, 0015035 protein disulfide oxidoreductase activity, 0045454 cell redox homeostasis; PDB: 1QFN_A 1GRX_A 1EGO_A 1EGR_A 3RHC_A 3RHB_A 3IPZ_A 1NHO_A 3GX8_A 3D5J_A ....
Probab=98.41 E-value=2.3e-07 Score=51.91 Aligned_cols=60 Identities=20% Similarity=0.238 Sum_probs=48.2
Q ss_pred eEEecCCCCchHHHHHHHHHHhCCCceEEEccCCCCCCCChhHhhhCCCCccceeeeecCCCeee
Q psy2059 3 IDFYYVPGSAPCRAVQLAAAQIGVPLNLKHTDLMKGEHLTPEFLKLNPQHTVPYSQQTNSQEYRR 67 (126)
Q Consensus 3 ~~Ly~~~~s~~~~~v~~~l~~~gi~~~~~~v~~~~~~~~~~~~~~~~p~~~vP~L~~~~~~~~~l 67 (126)
+++|+.+.||+|.+++-+|+.+|++|+.+.++-.. ...+++.+.+...++|++ ..||..|
T Consensus 1 V~vy~~~~C~~C~~~~~~L~~~~i~y~~~dv~~~~--~~~~~l~~~~g~~~~P~v---~i~g~~I 60 (60)
T PF00462_consen 1 VVVYTKPGCPYCKKAKEFLDEKGIPYEEVDVDEDE--EAREELKELSGVRTVPQV---FIDGKFI 60 (60)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTTBEEEEEEGGGSH--HHHHHHHHHHSSSSSSEE---EETTEEE
T ss_pred cEEEEcCCCcCHHHHHHHHHHcCCeeeEcccccch--hHHHHHHHHcCCCccCEE---EECCEEC
Confidence 47999999999999999999999999988886642 234555666678899999 6677643
No 79
>TIGR02189 GlrX-like_plant Glutaredoxin-like family. This family of glutaredoxin-like proteins is aparrently limited to plants. Multiple isoforms are found in A. thaliana and O.sativa.
Probab=98.40 E-value=1.2e-06 Score=54.12 Aligned_cols=72 Identities=13% Similarity=0.143 Sum_probs=56.5
Q ss_pred eeEEecCCCCchHHHHHHHHHHhCCCceEEEccCCCCCC-CChhHhhhCCCCccceeeeecCCCeeeechHHHHHH
Q psy2059 2 TIDFYYVPGSAPCRAVQLAAAQIGVPLNLKHTDLMKGEH-LTPEFLKLNPQHTVPYSQQTNSQEYRREESRAIIAY 76 (126)
Q Consensus 2 ~~~Ly~~~~s~~~~~v~~~l~~~gi~~~~~~v~~~~~~~-~~~~~~~~~p~~~vP~L~~~~~~~~~l~eS~aI~~y 76 (126)
++++|..+.||+|.+++-+|+..|++|+.+.++-..... ..+++.+.+...++|.+ ..+|..+.....+...
T Consensus 9 ~Vvvysk~~Cp~C~~ak~~L~~~~i~~~~vdid~~~~~~~~~~~l~~~tg~~tvP~V---fi~g~~iGG~ddl~~l 81 (99)
T TIGR02189 9 AVVIFSRSSCCMCHVVKRLLLTLGVNPAVHEIDKEPAGKDIENALSRLGCSPAVPAV---FVGGKLVGGLENVMAL 81 (99)
T ss_pred CEEEEECCCCHHHHHHHHHHHHcCCCCEEEEcCCCccHHHHHHHHHHhcCCCCcCeE---EECCEEEcCHHHHHHH
Confidence 478999999999999999999999999988887432111 11234566778899999 8888888888777663
No 80
>PHA03050 glutaredoxin; Provisional
Probab=98.25 E-value=4.4e-06 Score=52.39 Aligned_cols=70 Identities=11% Similarity=0.112 Sum_probs=56.1
Q ss_pred eEEecCCCCchHHHHHHHHHHhCC---CceEEEccCCC-CCCCChhHhhhCCCCccceeeeecCCCeeeechHHHHH
Q psy2059 3 IDFYYVPGSAPCRAVQLAAAQIGV---PLNLKHTDLMK-GEHLTPEFLKLNPQHTVPYSQQTNSQEYRREESRAIIA 75 (126)
Q Consensus 3 ~~Ly~~~~s~~~~~v~~~l~~~gi---~~~~~~v~~~~-~~~~~~~~~~~~p~~~vP~L~~~~~~~~~l~eS~aI~~ 75 (126)
+++|..+.||+|.+++-+|+..|+ +|+.+.++-.. +.....++.+.+...+||.+ ..+|..|.....+..
T Consensus 15 V~vys~~~CPyC~~ak~~L~~~~i~~~~~~~i~i~~~~~~~~~~~~l~~~tG~~tVP~I---fI~g~~iGG~ddl~~ 88 (108)
T PHA03050 15 VTIFVKFTCPFCRNALDILNKFSFKRGAYEIVDIKEFKPENELRDYFEQITGGRTVPRI---FFGKTSIGGYSDLLE 88 (108)
T ss_pred EEEEECCCChHHHHHHHHHHHcCCCcCCcEEEECCCCCCCHHHHHHHHHHcCCCCcCEE---EECCEEEeChHHHHH
Confidence 789999999999999999999999 78887776421 11224566788888899999 888988888877766
No 81
>TIGR02180 GRX_euk Glutaredoxin. This model represents eukaryotic glutaredoxins and includes sequences from fungi, plants and metazoans as well as viruses.
Probab=98.21 E-value=7.7e-06 Score=48.23 Aligned_cols=74 Identities=12% Similarity=0.111 Sum_probs=57.1
Q ss_pred eEEecCCCCchHHHHHHHHHHhCCC--ceEEEccCCCCCCC-ChhHhhhCCCCccceeeeecCCCeeeechHHHHHHHHH
Q psy2059 3 IDFYYVPGSAPCRAVQLAAAQIGVP--LNLKHTDLMKGEHL-TPEFLKLNPQHTVPYSQQTNSQEYRREESRAIIAYLAE 79 (126)
Q Consensus 3 ~~Ly~~~~s~~~~~v~~~l~~~gi~--~~~~~v~~~~~~~~-~~~~~~~~p~~~vP~L~~~~~~~~~l~eS~aI~~yL~~ 79 (126)
+++|+.+.||+|.+++-+|+..+++ |+...++....... .+.+.+.....++|.+ ..+|..+.++..+.+...+
T Consensus 1 V~~f~~~~Cp~C~~~~~~L~~~~i~~~~~~~~v~~~~~~~~~~~~l~~~~g~~~vP~v---~i~g~~igg~~~~~~~~~~ 77 (84)
T TIGR02180 1 VVVFSKSYCPYCKKAKEILAKLNVKPAYEVVELDQLSNGSEIQDYLEEITGQRTVPNI---FINGKFIGGCSDLLALYKS 77 (84)
T ss_pred CEEEECCCChhHHHHHHHHHHcCCCCCCEEEEeeCCCChHHHHHHHHHHhCCCCCCeE---EECCEEEcCHHHHHHHHHc
Confidence 4689999999999999999999999 88877766431111 1224466677789999 8899999999888776653
No 82
>PF10568 Tom37: Outer mitochondrial membrane transport complex protein; InterPro: IPR019564 Tom37 is one of the outer membrane proteins that make up the TOM complex for guiding cytosolic mitochondrial beta-barrel proteins from the cytosol across the outer mitochondrial membrane into the intramembrane space. In conjunction with Tom70, it guides peptides without an mitochondrial targeting sequence (MTS) into Tom40, the protein that forms the passage through the outer membrane []. It has homology with metaxin, also part of the outer mitochondrial membrane beta-barrel protein transport complex []. This entry represents outer mitochondrial membrane transport complex proteins Tom37 and metaxin.; GO: 0006626 protein targeting to mitochondrion, 0005741 mitochondrial outer membrane
Probab=98.07 E-value=2e-05 Score=45.84 Aligned_cols=55 Identities=24% Similarity=0.313 Sum_probs=47.0
Q ss_pred CCchHHHHHHHHHHhCCC---ceEEEccCCCCCCCChhHhhhCCCCccceeeeecC-CCeeeechHHHHHHH
Q psy2059 10 GSAPCRAVQLAAAQIGVP---LNLKHTDLMKGEHLTPEFLKLNPQHTVPYSQQTNS-QEYRREESRAIIAYL 77 (126)
Q Consensus 10 ~s~~~~~v~~~l~~~gi~---~~~~~v~~~~~~~~~~~~~~~~p~~~vP~L~~~~~-~~~~l~eS~aI~~yL 77 (126)
.++.|.++.+.|+..+.+ ++.+..+ ++ .++|.|++|+| .+ ++..+.+-..|++||
T Consensus 13 id~ecLa~~~yl~~~~~~~~~~~vv~s~-------n~---~~Sptg~LP~L---~~~~~~~vsg~~~Iv~yL 71 (72)
T PF10568_consen 13 IDPECLAVIAYLKFAGAPEQQFKVVPSN-------NP---WLSPTGELPAL---IDSGGTWVSGFRNIVEYL 71 (72)
T ss_pred cCHHHHHHHHHHHhCCCCCceEEEEEcC-------CC---CcCCCCCCCEE---EECCCcEEECHHHHHHhh
Confidence 578899999999999999 7766542 12 47899999999 76 999999999999998
No 83
>TIGR00365 monothiol glutaredoxin, Grx4 family. The gene for the member of this glutaredoxin family in E. coli, originally designated ydhD, is now designated grxD. Its protein, Grx4, is a monothiol glutaredoxin similar to Grx5 of yeast, which is involved in iron-sulfur cluster formation.
Probab=98.06 E-value=1.7e-05 Score=48.77 Aligned_cols=70 Identities=11% Similarity=0.103 Sum_probs=53.0
Q ss_pred eEEecC-----CCCchHHHHHHHHHHhCCCceEEEccCCCCCCCChhHhhhCCCCccceeeeecCCCeeeechHHHHHHH
Q psy2059 3 IDFYYV-----PGSAPCRAVQLAAAQIGVPLNLKHTDLMKGEHLTPEFLKLNPQHTVPYSQQTNSQEYRREESRAIIAYL 77 (126)
Q Consensus 3 ~~Ly~~-----~~s~~~~~v~~~l~~~gi~~~~~~v~~~~~~~~~~~~~~~~p~~~vP~L~~~~~~~~~l~eS~aI~~yL 77 (126)
+.+|.. +.||+|.+++-+|..+|++|+.+.++ .......+..+.+...++|.+ ..+|..+.....+.+..
T Consensus 14 Vvvf~kg~~~~~~Cp~C~~ak~lL~~~~i~~~~~di~--~~~~~~~~l~~~tg~~tvP~v---fi~g~~iGG~ddl~~l~ 88 (97)
T TIGR00365 14 VVLYMKGTPQFPQCGFSARAVQILKACGVPFAYVNVL--EDPEIRQGIKEYSNWPTIPQL---YVKGEFVGGCDIIMEMY 88 (97)
T ss_pred EEEEEccCCCCCCCchHHHHHHHHHHcCCCEEEEECC--CCHHHHHHHHHHhCCCCCCEE---EECCEEEeChHHHHHHH
Confidence 456754 88999999999999999999877664 222223444567778899999 88898888887776643
No 84
>cd03028 GRX_PICOT_like Glutaredoxin (GRX) family, PKC-interacting cousin of TRX (PICOT)-like subfamily; composed of PICOT and GRX-PICOT-like proteins. The non-PICOT members of this family contain only the GRX-like domain, whereas PICOT contains an N-terminal TRX-like domain followed by one to three GRX-like domains. It is interesting to note that PICOT from plants contain three repeats of the GRX-like domain, metazoan proteins (except for insect) have two repeats, while fungal sequences contain only one copy of the domain. PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli. Both GRX and TRX domains of PICOT are required for its activity. Characterized non-PICOT members of this family include CXIP1, a CAX-interacting protein
Probab=98.01 E-value=2.8e-05 Score=47.03 Aligned_cols=70 Identities=13% Similarity=0.045 Sum_probs=54.1
Q ss_pred eEEecC-----CCCchHHHHHHHHHHhCCCceEEEccCCCCCCCChhHhhhCCCCccceeeeecCCCeeeechHHHHHHH
Q psy2059 3 IDFYYV-----PGSAPCRAVQLAAAQIGVPLNLKHTDLMKGEHLTPEFLKLNPQHTVPYSQQTNSQEYRREESRAIIAYL 77 (126)
Q Consensus 3 ~~Ly~~-----~~s~~~~~v~~~l~~~gi~~~~~~v~~~~~~~~~~~~~~~~p~~~vP~L~~~~~~~~~l~eS~aI~~yL 77 (126)
..+|.. +.||+|.+++-+|+..|++|+.+.++-. .....+..+.+...++|.+ ..+|..+.....+.+..
T Consensus 10 vvvf~k~~~~~~~Cp~C~~ak~~L~~~~i~y~~idv~~~--~~~~~~l~~~~g~~tvP~v---fi~g~~iGG~~~l~~l~ 84 (90)
T cd03028 10 VVLFMKGTPEEPRCGFSRKVVQILNQLGVDFGTFDILED--EEVRQGLKEYSNWPTFPQL---YVNGELVGGCDIVKEMH 84 (90)
T ss_pred EEEEEcCCCCCCCCcHHHHHHHHHHHcCCCeEEEEcCCC--HHHHHHHHHHhCCCCCCEE---EECCEEEeCHHHHHHHH
Confidence 566654 6899999999999999999998877532 2223455577778899999 88899898888877643
No 85
>PRK12759 bifunctional gluaredoxin/ribonucleoside-diphosphate reductase subunit beta; Provisional
Probab=97.64 E-value=0.00018 Score=54.95 Aligned_cols=69 Identities=16% Similarity=0.124 Sum_probs=52.2
Q ss_pred Ce-eEEecCCCCchHHHHHHHHHHhCCCceEEEccCCCCCCCChhHh---------hhCCCCccceeeeecCCCeeeech
Q psy2059 1 MT-IDFYYVPGSAPCRAVQLAAAQIGVPLNLKHTDLMKGEHLTPEFL---------KLNPQHTVPYSQQTNSQEYRREES 70 (126)
Q Consensus 1 M~-~~Ly~~~~s~~~~~v~~~l~~~gi~~~~~~v~~~~~~~~~~~~~---------~~~p~~~vP~L~~~~~~~~~l~eS 70 (126)
|+ +++|..+.||+|.++.-+|..+|++|+.+.++-. . ...++. ..+...+||++ .-||..+..-
T Consensus 1 m~~V~vys~~~Cp~C~~aK~~L~~~gi~~~~idi~~~--~-~~~~~~~~~~~~~~~~~~g~~tvP~i---fi~~~~igGf 74 (410)
T PRK12759 1 MVEVRIYTKTNCPFCDLAKSWFGANDIPFTQISLDDD--V-KRAEFYAEVNKNILLVEEHIRTVPQI---FVGDVHIGGY 74 (410)
T ss_pred CCcEEEEeCCCCHHHHHHHHHHHHCCCCeEEEECCCC--h-hHHHHHHHHhhccccccCCCCccCeE---EECCEEEeCc
Confidence 65 8999999999999999999999999998888622 1 122322 22466789999 7788888777
Q ss_pred HHHHH
Q psy2059 71 RAIIA 75 (126)
Q Consensus 71 ~aI~~ 75 (126)
..+..
T Consensus 75 ~~l~~ 79 (410)
T PRK12759 75 DNLMA 79 (410)
T ss_pred hHHHH
Confidence 66654
No 86
>KOG3027|consensus
Probab=97.49 E-value=0.00057 Score=47.38 Aligned_cols=87 Identities=18% Similarity=0.227 Sum_probs=67.1
Q ss_pred CCchHHHHHHHHHHhCCCceEEEccCCCCCCCChhHhhhCCCCccceeeeecCCCeeeechHHHHHHHHHHhCCCCCCCC
Q psy2059 10 GSAPCRAVQLAAAQIGVPLNLKHTDLMKGEHLTPEFLKLNPQHTVPYSQQTNSQEYRREESRAIIAYLAEQYGKDDSLYP 89 (126)
Q Consensus 10 ~s~~~~~v~~~l~~~gi~~~~~~v~~~~~~~~~~~~~~~~p~~~vP~L~~~~~~~~~l~eS~aI~~yL~~~~~~~~~l~p 89 (126)
....|..|...|..+++||..+.. .+.+| ++|.|++|.| ..|.+.++|=.+|..+...+--.-.++.
T Consensus 33 d~ascLAVqtfLrMcnLPf~v~~~-------~Naef--mSP~G~vPll---r~g~~~~aef~pIV~fVeak~~~l~s~l- 99 (257)
T KOG3027|consen 33 DNASCLAVQTFLRMCNLPFNVRQR-------ANAEF--MSPGGKVPLL---RIGKTLFAEFEPIVDFVEAKGVTLTSWL- 99 (257)
T ss_pred cchhHHHHHHHHHHcCCCceeeec-------CCccc--cCCCCCCcee---eecchhhhhhhHHHHHHHHhccchhhhh-
Confidence 344689999999999999997654 34455 6899999999 8899999999999999998742211122
Q ss_pred CCHHHHHHHHHHHhhhccccc
Q psy2059 90 KDPKARGIVNQRLYFDIGTLY 110 (126)
Q Consensus 90 ~~~~~~~~~~~wl~~~~~~~~ 110 (126)
+..+++.++..+++.++-+.
T Consensus 100 -sE~qkadmra~vslVen~~t 119 (257)
T KOG3027|consen 100 -SEDQKADMRAYVSLVENLLT 119 (257)
T ss_pred -hhHHHHHHHHHHHHHHHHHH
Confidence 45678888888888776554
No 87
>COG1393 ArsC Arsenate reductase and related proteins, glutaredoxin family [Inorganic ion transport and metabolism]
Probab=97.40 E-value=0.00031 Score=44.65 Aligned_cols=34 Identities=21% Similarity=0.310 Sum_probs=31.2
Q ss_pred CeeEEecCCCCchHHHHHHHHHHhCCCceEEEcc
Q psy2059 1 MTIDFYYVPGSAPCRAVQLAAAQIGVPLNLKHTD 34 (126)
Q Consensus 1 M~~~Ly~~~~s~~~~~v~~~l~~~gi~~~~~~v~ 34 (126)
|++++|+.+.|..|++++-.|++.|++|+.+.+.
T Consensus 1 ~~itiy~~p~C~t~rka~~~L~~~gi~~~~~~y~ 34 (117)
T COG1393 1 MMITIYGNPNCSTCRKALAWLEEHGIEYTFIDYL 34 (117)
T ss_pred CeEEEEeCCCChHHHHHHHHHHHcCCCcEEEEee
Confidence 7899999999999999999999999999876554
No 88
>cd03031 GRX_GRX_like Glutaredoxin (GRX) family, GRX-like domain containing protein subfamily; composed of uncharacterized eukaryotic proteins containing a GRX-like domain having only one conserved cysteine, aligning to the C-terminal cysteine of the CXXC motif of GRXs. This subfamily is predominantly composed of plant proteins. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins via a redox active CXXC motif using a similar dithiol mechanism employed by TRXs. GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. Proteins containing only the C-terminal cysteine are generally redox inactive.
Probab=97.40 E-value=0.00065 Score=44.89 Aligned_cols=69 Identities=10% Similarity=0.148 Sum_probs=53.2
Q ss_pred eEEecCC------CCchHHHHHHHHHHhCCCceEEEccCCCCCCCChhHhhhCC----CCccceeeeecCCCeeeechHH
Q psy2059 3 IDFYYVP------GSAPCRAVQLAAAQIGVPLNLKHTDLMKGEHLTPEFLKLNP----QHTVPYSQQTNSQEYRREESRA 72 (126)
Q Consensus 3 ~~Ly~~~------~s~~~~~v~~~l~~~gi~~~~~~v~~~~~~~~~~~~~~~~p----~~~vP~L~~~~~~~~~l~eS~a 72 (126)
++||... ..++|.+++.+|+.+|++|+.+.++... ...++..+... ..++|.+ .-+|..|.....
T Consensus 2 VvlYttsl~giR~t~~~C~~ak~iL~~~~V~~~e~DVs~~~--~~~~EL~~~~g~~~~~~tvPqV---FI~G~~IGG~de 76 (147)
T cd03031 2 VVLYTTSLRGVRKTFEDCNNVRAILESFRVKFDERDVSMDS--GFREELRELLGAELKAVSLPRV---FVDGRYLGGAEE 76 (147)
T ss_pred EEEEEcCCcCCCCcChhHHHHHHHHHHCCCcEEEEECCCCH--HHHHHHHHHhCCCCCCCCCCEE---EECCEEEecHHH
Confidence 5788888 7999999999999999999988876532 22345555443 3689999 888998888877
Q ss_pred HHHH
Q psy2059 73 IIAY 76 (126)
Q Consensus 73 I~~y 76 (126)
+.+.
T Consensus 77 l~~L 80 (147)
T cd03031 77 VLRL 80 (147)
T ss_pred HHHH
Confidence 7663
No 89
>PRK10824 glutaredoxin-4; Provisional
Probab=97.33 E-value=0.00088 Score=42.45 Aligned_cols=64 Identities=13% Similarity=0.010 Sum_probs=50.6
Q ss_pred CCCchHHHHHHHHHHhCCCceEEEccCCCCCCCChhHhhhCCCCccceeeeecCCCeeeechHHHHHHH
Q psy2059 9 PGSAPCRAVQLAAAQIGVPLNLKHTDLMKGEHLTPEFLKLNPQHTVPYSQQTNSQEYRREESRAIIAYL 77 (126)
Q Consensus 9 ~~s~~~~~v~~~l~~~gi~~~~~~v~~~~~~~~~~~~~~~~p~~~vP~L~~~~~~~~~l~eS~aI~~yL 77 (126)
+.||+|.++.-+|...|++|+.+.++-. ......+...+...+||-+ .-+|..|.....+....
T Consensus 28 p~Cpyc~~ak~lL~~~~i~~~~idi~~d--~~~~~~l~~~sg~~TVPQI---FI~G~~IGG~ddl~~l~ 91 (115)
T PRK10824 28 PSCGFSAQAVQALSACGERFAYVDILQN--PDIRAELPKYANWPTFPQL---WVDGELVGGCDIVIEMY 91 (115)
T ss_pred CCCchHHHHHHHHHHcCCCceEEEecCC--HHHHHHHHHHhCCCCCCeE---EECCEEEcChHHHHHHH
Confidence 5899999999999999999988766432 2223455577788899999 99999999888777643
No 90
>PRK01655 spxA transcriptional regulator Spx; Reviewed
Probab=97.31 E-value=0.00042 Score=44.85 Aligned_cols=32 Identities=13% Similarity=0.382 Sum_probs=29.9
Q ss_pred eEEecCCCCchHHHHHHHHHHhCCCceEEEcc
Q psy2059 3 IDFYYVPGSAPCRAVQLAAAQIGVPLNLKHTD 34 (126)
Q Consensus 3 ~~Ly~~~~s~~~~~v~~~l~~~gi~~~~~~v~ 34 (126)
+++|+.+.|++|++++-.|+.+|++|+.+.+.
T Consensus 2 i~iY~~~~C~~C~ka~~~L~~~gi~~~~idi~ 33 (131)
T PRK01655 2 VTLFTSPSCTSCRKAKAWLEEHDIPFTERNIF 33 (131)
T ss_pred EEEEeCCCChHHHHHHHHHHHcCCCcEEeecc
Confidence 79999999999999999999999999987764
No 91
>cd03032 ArsC_Spx Arsenate Reductase (ArsC) family, Spx subfamily; Spx is a unique RNA polymerase (RNAP)-binding protein present in bacilli and some mollicutes. It inhibits transcription by binding to the C-terminal domain of the alpha subunit of RNAP, disrupting complex formation between RNAP and certain transcriptional activator proteins like ResD and ComA. In response to oxidative stress, Spx can also activate transcription, making it a general regulator that exerts both positive and negative control over transcription initiation. Spx has been shown to exert redox-sensitive transcriptional control over genes like trxA (TRX) and trxB (TRX reductase), genes that function in thiol homeostasis. This redox-sensitive activity is dependent on the presence of a CXXC motif, present in some members of the Spx subfamily, that acts as a thiol/disulfide switch. Spx has also been shown to repress genes in a sulfate-dependent manner independent of the presence of the CXXC motif.
Probab=97.31 E-value=0.00044 Score=43.67 Aligned_cols=32 Identities=19% Similarity=0.412 Sum_probs=29.8
Q ss_pred eEEecCCCCchHHHHHHHHHHhCCCceEEEcc
Q psy2059 3 IDFYYVPGSAPCRAVQLAAAQIGVPLNLKHTD 34 (126)
Q Consensus 3 ~~Ly~~~~s~~~~~v~~~l~~~gi~~~~~~v~ 34 (126)
+++|+.+.|+.|++++-.|+.+|++|+.+.+.
T Consensus 2 i~iY~~~~C~~c~ka~~~L~~~gi~~~~idi~ 33 (115)
T cd03032 2 IKLYTSPSCSSCRKAKQWLEEHQIPFEERNLF 33 (115)
T ss_pred EEEEeCCCCHHHHHHHHHHHHCCCceEEEecC
Confidence 79999999999999999999999999987764
No 92
>KOG2903|consensus
Probab=97.30 E-value=0.0018 Score=46.48 Aligned_cols=107 Identities=18% Similarity=0.253 Sum_probs=67.8
Q ss_pred eEEecCCCCchHHHHHHHHHHhCCC----ceEEEc-cCCCC-------------------------CC-CChhHhhhCC-
Q psy2059 3 IDFYYVPGSAPCRAVQLAAAQIGVP----LNLKHT-DLMKG-------------------------EH-LTPEFLKLNP- 50 (126)
Q Consensus 3 ~~Ly~~~~s~~~~~v~~~l~~~gi~----~~~~~v-~~~~~-------------------------~~-~~~~~~~~~p- 50 (126)
+.||..-.||++.++.++.+.||++ +..+.- .-.+| .. .++-|...+|
T Consensus 38 yhLYvslaCPWAhRtLi~r~LKGL~~~i~~s~v~~~~d~~gW~F~~~~~~~nDs~~l~~~~d~~~g~k~l~elY~~~~p~ 117 (319)
T KOG2903|consen 38 YHLYVSLACPWAHRTLIVRALKGLEPAIGVSVVHWHLDDKGWRFLDEHIIINDSERLGVTPDPLNGAKRLRELYYIASPN 117 (319)
T ss_pred EEEEEeccCcHHHHHHHHHHHcCccccceeEEeccccCCCcccCCCcccCCCchhcccCCCcccccchhHHHHHhhcCCC
Confidence 5689999999999999999999973 222221 10000 00 0112223334
Q ss_pred ---CCccceeeeecCCCeeeechHHHHHHHH---HHhCC-C----CCCCCCCHHHHHHHHHHHhhhccccch
Q psy2059 51 ---QHTVPYSQQTNSQEYRREESRAIIAYLA---EQYGK-D----DSLYPKDPKARGIVNQRLYFDIGTLYQ 111 (126)
Q Consensus 51 ---~~~vP~L~~~~~~~~~l~eS~aI~~yL~---~~~~~-~----~~l~p~~~~~~~~~~~wl~~~~~~~~~ 111 (126)
..+||||+|......+-.||..|++.+. ..+.+ + -.|+| +.-+++++.|-+|.-..+-.
T Consensus 118 Y~grfTVPVLWD~k~ktIVnNES~eIIr~fNs~f~ef~~~~e~~~lDL~P--~~L~~~Ide~N~wvy~~INN 187 (319)
T KOG2903|consen 118 YTGRFTVPVLWDLKTKTIVNNESSEIIRMFNSAFDEFNGIAENPVLDLYP--SSLRAQIDETNSWVYDKINN 187 (319)
T ss_pred CCceEEEEEEEccccceeecCchHHHHHHHhhhhhhhhccccCCccccCC--HHHHHHHhhhhceecccccC
Confidence 3359999544446677789999999998 33322 1 12777 55688999999886555443
No 93
>cd03036 ArsC_like Arsenate Reductase (ArsC) family, unknown subfamily; uncharacterized proteins containing a CXXC motif with similarity to thioredoxin (TRX)-fold arsenic reductases, ArsC. Proteins containing a redox active CXXC motif like TRX and glutaredoxin (GRX) function as protein disulfide oxidoreductases, altering the redox state of target proteins via the reversible oxidation of the active site dithiol. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via GRX, through a single catalytic cysteine.
Probab=97.30 E-value=0.00036 Score=43.83 Aligned_cols=33 Identities=21% Similarity=0.329 Sum_probs=29.9
Q ss_pred eEEecCCCCchHHHHHHHHHHhCCCceEEEccC
Q psy2059 3 IDFYYVPGSAPCRAVQLAAAQIGVPLNLKHTDL 35 (126)
Q Consensus 3 ~~Ly~~~~s~~~~~v~~~l~~~gi~~~~~~v~~ 35 (126)
+++|+.+.|++|++++-.|+++|++|+.+.+.-
T Consensus 1 i~iY~~~~C~~c~ka~~~L~~~~i~~~~idi~~ 33 (111)
T cd03036 1 LKFYEYPKCSTCRKAKKWLDEHGVDYTAIDIVE 33 (111)
T ss_pred CEEEECCCCHHHHHHHHHHHHcCCceEEecccC
Confidence 589999999999999999999999998877653
No 94
>COG4545 Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.28 E-value=0.00089 Score=38.96 Aligned_cols=66 Identities=14% Similarity=0.060 Sum_probs=48.2
Q ss_pred Ce-eEEecCCCCchHHHHHHHHHHhCCCceEEEccCCC--------CCCCChhHh--hhCCCCccceeeeecCCCeeee
Q psy2059 1 MT-IDFYYVPGSAPCRAVQLAAAQIGVPLNLKHTDLMK--------GEHLTPEFL--KLNPQHTVPYSQQTNSQEYRRE 68 (126)
Q Consensus 1 M~-~~Ly~~~~s~~~~~v~~~l~~~gi~~~~~~v~~~~--------~~~~~~~~~--~~~p~~~vP~L~~~~~~~~~l~ 68 (126)
|+ .+||+...||-|....-.|+..+++|+.+.+.-.. -....++|- +.|..--||+|- .+||.++.
T Consensus 1 mskp~lfgsn~Cpdca~a~eyl~rl~v~yd~VeIt~Sm~NlKrFl~lRDs~~~Fd~vk~~gyiGIPall--~~d~~vVl 77 (85)
T COG4545 1 MSKPKLFGSNLCPDCAPAVEYLERLNVDYDFVEITESMANLKRFLHLRDSRPEFDEVKSNGYIGIPALL--TDDGKVVL 77 (85)
T ss_pred CCCceeeccccCcchHHHHHHHHHcCCCceeeehhhhhhhHHHHHhhhccchhHHhhhhcCcccceEEE--eCCCcEEE
Confidence 54 69999999999999999999999999998875321 123456664 344455599994 56666554
No 95
>PRK10026 arsenate reductase; Provisional
Probab=97.23 E-value=0.00054 Score=44.95 Aligned_cols=34 Identities=21% Similarity=0.247 Sum_probs=30.9
Q ss_pred Ce-eEEecCCCCchHHHHHHHHHHhCCCceEEEcc
Q psy2059 1 MT-IDFYYVPGSAPCRAVQLAAAQIGVPLNLKHTD 34 (126)
Q Consensus 1 M~-~~Ly~~~~s~~~~~v~~~l~~~gi~~~~~~v~ 34 (126)
|+ +++|+.+.|..|++++-.|+++|++|+++.+-
T Consensus 1 m~~i~iY~~p~Cst~RKA~~wL~~~gi~~~~~d~~ 35 (141)
T PRK10026 1 MSNITIYHNPACGTSRNTLEMIRNSGTEPTIIHYL 35 (141)
T ss_pred CCEEEEEeCCCCHHHHHHHHHHHHCCCCcEEEeee
Confidence 64 99999999999999999999999999887753
No 96
>cd02977 ArsC_family Arsenate Reductase (ArsC) family; composed of TRX-fold arsenic reductases and similar proteins including the transcriptional regulator, Spx. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX), through a single catalytic cysteine. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases. Spx is a general regulator that exerts negative and positive control over transcription initiation by binding to the C-terminal domain of the alpha subunit of RNA polymerase.
Probab=97.20 E-value=0.00061 Score=42.21 Aligned_cols=32 Identities=16% Similarity=0.177 Sum_probs=29.6
Q ss_pred eEEecCCCCchHHHHHHHHHHhCCCceEEEcc
Q psy2059 3 IDFYYVPGSAPCRAVQLAAAQIGVPLNLKHTD 34 (126)
Q Consensus 3 ~~Ly~~~~s~~~~~v~~~l~~~gi~~~~~~v~ 34 (126)
+++|+.+.|++|++++-.|+++|++|+.+.+.
T Consensus 1 i~iY~~~~C~~c~ka~~~L~~~~i~~~~idi~ 32 (105)
T cd02977 1 ITIYGNPNCSTSRKALAWLEEHGIEYEFIDYL 32 (105)
T ss_pred CEEEECCCCHHHHHHHHHHHHcCCCcEEEeec
Confidence 57999999999999999999999999987774
No 97
>KOG3028|consensus
Probab=97.15 E-value=0.012 Score=43.06 Aligned_cols=94 Identities=15% Similarity=0.109 Sum_probs=69.2
Q ss_pred CCchHHHHHHHHHHhCCCceEEEccCCCCCCCChhHhhhCCCCccceeeeecCCCeeeechHHHHHHHHHHhCCCCCCCC
Q psy2059 10 GSAPCRAVQLAAAQIGVPLNLKHTDLMKGEHLTPEFLKLNPQHTVPYSQQTNSQEYRREESRAIIAYLAEQYGKDDSLYP 89 (126)
Q Consensus 10 ~s~~~~~v~~~l~~~gi~~~~~~v~~~~~~~~~~~~~~~~p~~~vP~L~~~~~~~~~l~eS~aI~~yL~~~~~~~~~l~p 89 (126)
.++.|.++.+.++..+.|.+++..+- + -.+|.|++|+|+ .++|..+..-.-|..+|...-.+-. +-+
T Consensus 16 id~~sL~~l~y~kl~~~~l~v~~ssN-------~---~~s~sg~LP~l~--~~ng~~va~~~~iv~~L~k~~~ky~-~d~ 82 (313)
T KOG3028|consen 16 IDPDSLAALIYLKLAGAPLKVVVSSN-------P---WRSPSGKLPYLI--TDNGTKVAGPVKIVQFLKKNTKKYN-LDA 82 (313)
T ss_pred cChhHHHHHHHHHHhCCCceeEeecC-------C---CCCCCCCCCeEE--ecCCceeccHHHHHHHHHHhcccCC-cCc
Confidence 37789999999999997776554422 1 257899999996 6678999999999999998522211 222
Q ss_pred C-CHHHHHHHHHHHhhhccccchhhHHH
Q psy2059 90 K-DPKARGIVNQRLYFDIGTLYQRFADY 116 (126)
Q Consensus 90 ~-~~~~~~~~~~wl~~~~~~~~~~~~~~ 116 (126)
. ...+++....|+++..+.+.+++..-
T Consensus 83 dl~~kq~a~~~a~~sll~~~l~~a~~~t 110 (313)
T KOG3028|consen 83 DLSAKQLADTLAFMSLLEENLEPALLYT 110 (313)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2 25678889999999888888776443
No 98
>PRK13344 spxA transcriptional regulator Spx; Reviewed
Probab=97.09 E-value=0.0011 Score=43.09 Aligned_cols=32 Identities=9% Similarity=0.249 Sum_probs=30.1
Q ss_pred eEEecCCCCchHHHHHHHHHHhCCCceEEEcc
Q psy2059 3 IDFYYVPGSAPCRAVQLAAAQIGVPLNLKHTD 34 (126)
Q Consensus 3 ~~Ly~~~~s~~~~~v~~~l~~~gi~~~~~~v~ 34 (126)
+++|+.+.|+.|++++-.|+.+|++|+.+.+.
T Consensus 2 i~iY~~~~C~~crkA~~~L~~~~i~~~~~d~~ 33 (132)
T PRK13344 2 IKIYTISSCTSCKKAKTWLNAHQLSYKEQNLG 33 (132)
T ss_pred EEEEeCCCCHHHHHHHHHHHHcCCCeEEEECC
Confidence 79999999999999999999999999988775
No 99
>PRK10853 putative reductase; Provisional
Probab=97.05 E-value=0.0011 Score=42.10 Aligned_cols=32 Identities=6% Similarity=0.163 Sum_probs=29.4
Q ss_pred eEEecCCCCchHHHHHHHHHHhCCCceEEEcc
Q psy2059 3 IDFYYVPGSAPCRAVQLAAAQIGVPLNLKHTD 34 (126)
Q Consensus 3 ~~Ly~~~~s~~~~~v~~~l~~~gi~~~~~~v~ 34 (126)
+++|+.+.|..|++++-.|+++|++|+.+.+.
T Consensus 2 i~iy~~~~C~t~rkA~~~L~~~~i~~~~~d~~ 33 (118)
T PRK10853 2 VTLYGIKNCDTIKKARRWLEAQGIDYRFHDYR 33 (118)
T ss_pred EEEEcCCCCHHHHHHHHHHHHcCCCcEEeehc
Confidence 79999999999999999999999999886653
No 100
>PRK12559 transcriptional regulator Spx; Provisional
Probab=97.02 E-value=0.0012 Score=42.74 Aligned_cols=33 Identities=15% Similarity=0.203 Sum_probs=30.3
Q ss_pred eEEecCCCCchHHHHHHHHHHhCCCceEEEccC
Q psy2059 3 IDFYYVPGSAPCRAVQLAAAQIGVPLNLKHTDL 35 (126)
Q Consensus 3 ~~Ly~~~~s~~~~~v~~~l~~~gi~~~~~~v~~ 35 (126)
+++|+.+.|+.|++++-.|+++|++|+.+.+.-
T Consensus 2 i~iY~~~~C~~crkA~~~L~~~gi~~~~~di~~ 34 (131)
T PRK12559 2 VVLYTTASCASCRKAKAWLEENQIDYTEKNIVS 34 (131)
T ss_pred EEEEeCCCChHHHHHHHHHHHcCCCeEEEEeeC
Confidence 789999999999999999999999998877653
No 101
>PTZ00062 glutaredoxin; Provisional
Probab=96.95 E-value=0.0031 Score=43.87 Aligned_cols=62 Identities=16% Similarity=-0.019 Sum_probs=48.4
Q ss_pred CCCchHHHHHHHHHHhCCCceEEEccCCCCCCCChhHhhhCCCCccceeeeecCCCeeeechHHHHH
Q psy2059 9 PGSAPCRAVQLAAAQIGVPLNLKHTDLMKGEHLTPEFLKLNPQHTVPYSQQTNSQEYRREESRAIIA 75 (126)
Q Consensus 9 ~~s~~~~~v~~~l~~~gi~~~~~~v~~~~~~~~~~~~~~~~p~~~vP~L~~~~~~~~~l~eS~aI~~ 75 (126)
|.||+|.++.-+|+..|++|+...++ ..........+.+...++|.+ .-+|..|.....+.+
T Consensus 126 p~C~~C~~~k~~L~~~~i~y~~~DI~--~d~~~~~~l~~~sg~~TvPqV---fI~G~~IGG~d~l~~ 187 (204)
T PTZ00062 126 PFCRFSNAVVNMLNSSGVKYETYNIF--EDPDLREELKVYSNWPTYPQL---YVNGELIGGHDIIKE 187 (204)
T ss_pred CCChhHHHHHHHHHHcCCCEEEEEcC--CCHHHHHHHHHHhCCCCCCeE---EECCEEEcChHHHHH
Confidence 68999999999999999999876664 322233445566777899999 888988888777766
No 102
>TIGR01617 arsC_related transcriptional regulator, Spx/MgsR family. This model represents a portion of the proteins within the larger set covered by Pfam model pfam03960. That larger family includes a glutaredoxin-dependent arsenate reductase (TIGR00014). Characterized members of this family include Spx and MgsR from Bacillus subtili. Spx is a global regulator for response to thiol-specific oxidative stress. It interacts with RNA polymerase. MgsR (modulator of the general stress response, also called YqgZ) provides a second level of regulation for more than a third of the proteins in the B. subtilis general stress regulon controlled by Sigma-B.
Probab=96.92 E-value=0.0016 Score=41.23 Aligned_cols=32 Identities=16% Similarity=0.327 Sum_probs=29.3
Q ss_pred eEEecCCCCchHHHHHHHHHHhCCCceEEEcc
Q psy2059 3 IDFYYVPGSAPCRAVQLAAAQIGVPLNLKHTD 34 (126)
Q Consensus 3 ~~Ly~~~~s~~~~~v~~~l~~~gi~~~~~~v~ 34 (126)
+++|+.+.|++|++++-.|++.|++|+.+.+.
T Consensus 1 i~iY~~~~C~~c~ka~~~L~~~~i~~~~idi~ 32 (117)
T TIGR01617 1 IKVYGSPNCTTCKKARRWLEANGIEYQFIDIG 32 (117)
T ss_pred CEEEeCCCCHHHHHHHHHHHHcCCceEEEecC
Confidence 58999999999999999999999999887764
No 103
>cd03033 ArsC_15kD Arsenate Reductase (ArsC) family, 15kD protein subfamily; composed of proteins of unknown function with similarity to thioredoxin-fold arsenic reductases, ArsC. It is encoded by an ORF present in a gene cluster associated with nitrogen fixation that also encodes dinitrogenase reductase ADP-ribosyltransferase (DRAT) and dinitrogenase reductase activating glycohydrolase (DRAG). ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via glutaredoxin, through a single catalytic cysteine.
Probab=96.92 E-value=0.0016 Score=41.15 Aligned_cols=32 Identities=22% Similarity=0.264 Sum_probs=29.3
Q ss_pred eEEecCCCCchHHHHHHHHHHhCCCceEEEcc
Q psy2059 3 IDFYYVPGSAPCRAVQLAAAQIGVPLNLKHTD 34 (126)
Q Consensus 3 ~~Ly~~~~s~~~~~v~~~l~~~gi~~~~~~v~ 34 (126)
+++|+.+.|..|++++-.|+++|++|+.+.+.
T Consensus 2 i~iy~~p~C~~crkA~~~L~~~gi~~~~~d~~ 33 (113)
T cd03033 2 IIFYEKPGCANNARQKALLEAAGHEVEVRDLL 33 (113)
T ss_pred EEEEECCCCHHHHHHHHHHHHcCCCcEEeehh
Confidence 68999999999999999999999999887664
No 104
>cd03035 ArsC_Yffb Arsenate Reductase (ArsC) family, Yffb subfamily; Yffb is an uncharacterized bacterial protein encoded by the yffb gene, related to the thioredoxin-fold arsenic reductases, ArsC. The structure of Yffb and the conservation of the catalytic cysteine suggest that it is likely to function as a glutathione (GSH)-dependent thiol reductase. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from GSH via glutaredoxin, through a single catalytic cysteine.
Probab=96.84 E-value=0.002 Score=40.13 Aligned_cols=32 Identities=13% Similarity=0.196 Sum_probs=29.4
Q ss_pred eEEecCCCCchHHHHHHHHHHhCCCceEEEcc
Q psy2059 3 IDFYYVPGSAPCRAVQLAAAQIGVPLNLKHTD 34 (126)
Q Consensus 3 ~~Ly~~~~s~~~~~v~~~l~~~gi~~~~~~v~ 34 (126)
+++|+.+.|+.|++++-.|+++|++|+.+.+.
T Consensus 1 i~iy~~~~C~~crka~~~L~~~~i~~~~~di~ 32 (105)
T cd03035 1 ITLYGIKNCDTVKKARKWLEARGVAYTFHDYR 32 (105)
T ss_pred CEEEeCCCCHHHHHHHHHHHHcCCCeEEEecc
Confidence 58999999999999999999999999987764
No 105
>cd02973 TRX_GRX_like Thioredoxin (TRX)-Glutaredoxin (GRX)-like family; composed of archaeal and bacterial proteins that show similarity to both TRX and GRX, including the C-terminal TRX-fold subdomain of Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). All members contain a redox-active CXXC motif and may function as PDOs. The archaeal proteins Mj0307 and Mt807 show structures more similar to GRX, but activities more similar to TRX. Some members of the family are similar to PfPDO in that they contain a second CXXC motif located in a second TRX-fold subdomain at the N-terminus; the superimposable N- and C-terminal TRX subdomains form a compact structure. PfPDO is postulated to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI). The C-terminal CXXC motif of PfPDO is required for its oxidase, reductase and isomerase activities. Also included in the family is the C-terminal TRX-fold subdomain of the N-terminal domain (NTD) of bacteri
Probab=96.80 E-value=0.006 Score=34.23 Aligned_cols=58 Identities=17% Similarity=0.202 Sum_probs=39.3
Q ss_pred eeEEecCCCCchHHHHHHHHHHh-----CCCceEEEccCCCCCCCChhHhhhCCCCccceeeeecCCCeeee
Q psy2059 2 TIDFYYVPGSAPCRAVQLAAAQI-----GVPLNLKHTDLMKGEHLTPEFLKLNPQHTVPYSQQTNSQEYRRE 68 (126)
Q Consensus 2 ~~~Ly~~~~s~~~~~v~~~l~~~-----gi~~~~~~v~~~~~~~~~~~~~~~~p~~~vP~L~~~~~~~~~l~ 68 (126)
.+++|+.+.|++|.++.-++++. ++++.. +|.. ..++..+......+|++ .-+|..++
T Consensus 2 ~v~~f~~~~C~~C~~~~~~l~~l~~~~~~i~~~~--id~~----~~~~l~~~~~i~~vPti---~i~~~~~~ 64 (67)
T cd02973 2 NIEVFVSPTCPYCPDAVQAANRIAALNPNISAEM--IDAA----EFPDLADEYGVMSVPAI---VINGKVEF 64 (67)
T ss_pred EEEEEECCCCCCcHHHHHHHHHHHHhCCceEEEE--EEcc----cCHhHHHHcCCcccCEE---EECCEEEE
Confidence 36899999999999998888875 455544 4433 23444455555679999 66665544
No 106
>TIGR01616 nitro_assoc nitrogenase-associated protein. This model describes a small family of uncharacterized proteins found so far in alpha and gamma proteobacteria and in Nostoc sp. PCC 7120, a cyanobacterium. The gene for this protein is associated with nitrogenase genes. This family shows sequence similarity to TIGR00014, a glutaredoxin-dependent arsenate reductase that converts arsentate to arsenite for disposal. This family is one of several included in Pfam model pfam03960.
Probab=96.71 E-value=0.003 Score=40.70 Aligned_cols=32 Identities=25% Similarity=0.280 Sum_probs=29.6
Q ss_pred eEEecCCCCchHHHHHHHHHHhCCCceEEEcc
Q psy2059 3 IDFYYVPGSAPCRAVQLAAAQIGVPLNLKHTD 34 (126)
Q Consensus 3 ~~Ly~~~~s~~~~~v~~~l~~~gi~~~~~~v~ 34 (126)
+++|+.+.|..|++++-.|+++|++|+.+.+.
T Consensus 3 i~iY~~p~Cst~RKA~~~L~~~gi~~~~~d~~ 34 (126)
T TIGR01616 3 IIFYEKPGCANNARQKAALKASGHDVEVQDIL 34 (126)
T ss_pred EEEEeCCCCHHHHHHHHHHHHCCCCcEEEecc
Confidence 78999999999999999999999999887654
No 107
>KOG1752|consensus
Probab=96.54 E-value=0.018 Score=35.84 Aligned_cols=73 Identities=15% Similarity=0.151 Sum_probs=55.9
Q ss_pred eEEecCCCCchHHHHHHHHHHhCCCceEEEccCCCCC-CCChhHhhhCCCCccceeeeecCCCeeeechHHHHHHHH
Q psy2059 3 IDFYYVPGSAPCRAVQLAAAQIGVPLNLKHTDLMKGE-HLTPEFLKLNPQHTVPYSQQTNSQEYRREESRAIIAYLA 78 (126)
Q Consensus 3 ~~Ly~~~~s~~~~~v~~~l~~~gi~~~~~~v~~~~~~-~~~~~~~~~~p~~~vP~L~~~~~~~~~l~eS~aI~~yL~ 78 (126)
..+|.-..||+|.+++-+|...|+++..+++|-.... .-...+.+..-..++|.+ .-+|..+.....+..+-.
T Consensus 16 VVifSKs~C~~c~~~k~ll~~~~v~~~vvELD~~~~g~eiq~~l~~~tg~~tvP~v---FI~Gk~iGG~~dl~~lh~ 89 (104)
T KOG1752|consen 16 VVIFSKSSCPYCHRAKELLSDLGVNPKVVELDEDEDGSEIQKALKKLTGQRTVPNV---FIGGKFIGGASDLMALHK 89 (104)
T ss_pred EEEEECCcCchHHHHHHHHHhCCCCCEEEEccCCCCcHHHHHHHHHhcCCCCCCEE---EECCEEEcCHHHHHHHHH
Confidence 5678889999999999999999999999888865321 111223355666799999 999999988888776544
No 108
>cd03030 GRX_SH3BGR Glutaredoxin (GRX) family, SH3BGR (SH3 domain binding glutamic acid-rich protein) subfamily; a recently-identified subfamily composed of SH3BGR and similar proteins possessing significant sequence similarity to GRX, but without a redox active CXXC motif. The SH3BGR gene was cloned in an effort to identify genes mapping to chromosome 21, which could be involved in the pathogenesis of congenital heart disease affecting Down syndrome newborns. Several human SH3BGR-like (SH3BGRL) genes have been identified since, mapping to different locations in the chromosome. Of these, SH3BGRL3 was identified as a tumor necrosis factor (TNF) alpha inhibitory protein and was also named TIP-B1. Upregulation of expression of SH3BGRL3 is associated with differentiation. It has been suggested that it functions as a regulator of differentiation-related signal transduction pathways.
Probab=96.44 E-value=0.015 Score=35.40 Aligned_cols=68 Identities=10% Similarity=0.011 Sum_probs=48.6
Q ss_pred eEEecCCCCc------hHHHHHHHHHHhCCCceEEEccCCCCCCCChhHhhhCC----CCccceeeeecCCCeeeechHH
Q psy2059 3 IDFYYVPGSA------PCRAVQLAAAQIGVPLNLKHTDLMKGEHLTPEFLKLNP----QHTVPYSQQTNSQEYRREESRA 72 (126)
Q Consensus 3 ~~Ly~~~~s~------~~~~v~~~l~~~gi~~~~~~v~~~~~~~~~~~~~~~~p----~~~vP~L~~~~~~~~~l~eS~a 72 (126)
+++|....+. .|+.++.+|+.+||+|+.+.++... ....+..+..+ ...+|-+ ..+|..+.+...
T Consensus 2 i~vY~ts~~g~~~~k~~~~~v~~lL~~k~I~f~eiDI~~d~--~~r~em~~~~~~~~g~~tvPQI---Fi~~~~iGg~dd 76 (92)
T cd03030 2 IKVYIASSSGSTEIKKRQQEVLGFLEAKKIEFEEVDISMNE--ENRQWMRENVPNENGKPLPPQI---FNGDEYCGDYEA 76 (92)
T ss_pred EEEEEecccccHHHHHHHHHHHHHHHHCCCceEEEecCCCH--HHHHHHHHhcCCCCCCCCCCEE---EECCEEeeCHHH
Confidence 5677776655 4567889999999999998887542 23445555543 3679988 888888888766
Q ss_pred HHH
Q psy2059 73 IIA 75 (126)
Q Consensus 73 I~~ 75 (126)
+..
T Consensus 77 l~~ 79 (92)
T cd03030 77 FFE 79 (92)
T ss_pred HHH
Confidence 655
No 109
>COG0435 ECM4 Predicted glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]
Probab=96.41 E-value=0.044 Score=39.85 Aligned_cols=106 Identities=17% Similarity=0.219 Sum_probs=67.6
Q ss_pred eEEecCCCCchHHHHHHHHHHhCCCc--eEEEccCCC------------CCCC---------ChhHhhhCC----CCccc
Q psy2059 3 IDFYYVPGSAPCRAVQLAAAQIGVPL--NLKHTDLMK------------GEHL---------TPEFLKLNP----QHTVP 55 (126)
Q Consensus 3 ~~Ly~~~~s~~~~~v~~~l~~~gi~~--~~~~v~~~~------------~~~~---------~~~~~~~~p----~~~vP 55 (126)
+.||.+-.||++.+..++=++||++- ....++... |... .+-|.+..| .-+||
T Consensus 52 YhLYvslaCPWAHRTLI~R~LkgLE~~Isvsvv~~~m~~~GW~F~~~~~g~t~dpl~g~~~L~~~Y~~adP~YsgRvTVP 131 (324)
T COG0435 52 YHLYVSLACPWAHRTLIFRALKGLEPVISVSVVHPLMDENGWTFDPEFPGATGDPLYGIERLSQLYTRADPDYSGRVTVP 131 (324)
T ss_pred EEEEEEecCchHHHHHHHHHHhcccccceEEEecccccCCCceEcCCCCCCCCCcccchhHHHHHHhhcCCCCCCceeEE
Confidence 67999999999999999999999743 112222211 1000 112223344 34599
Q ss_pred eeeeecCCCeeeechHHHHHHHHHHhCC----CCCCCCCCHHHHHHHHHHHhhhccccc
Q psy2059 56 YSQQTNSQEYRREESRAIIAYLAEQYGK----DDSLYPKDPKARGIVNQRLYFDIGTLY 110 (126)
Q Consensus 56 ~L~~~~~~~~~l~eS~aI~~yL~~~~~~----~~~l~p~~~~~~~~~~~wl~~~~~~~~ 110 (126)
+|+|.+..-.+-.||..|++-+...+.+ ...|+| ..-|.+++.|.+|+-..+-
T Consensus 132 VLwDk~~~tIVnNES~eIirm~N~aFde~~~~~~dlyP--~~Lr~eId~~n~~Iy~~vN 188 (324)
T COG0435 132 VLWDKKTQTIVNNESAEIIRMFNSAFDEFGASAVDLYP--EALRTEIDELNKWIYDTVN 188 (324)
T ss_pred EEEecCCCeeecCCcHHHHHHHHHHHHHHhhhccccCC--HHHHHHHHHHHhhhccccc
Confidence 9954334455666999999988876642 234888 4557889998888554443
No 110
>cd03034 ArsC_ArsC Arsenate Reductase (ArsC) family, ArsC subfamily; arsenic reductases similar to that encoded by arsC on the R733 plasmid of Escherichia coli. E. coli ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], the first step in the detoxification of arsenic, using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX). ArsC contains a single catalytic cysteine, within a thioredoxin fold, that forms a covalent thiolate-As(V) intermediate, which is reduced by GRX through a mixed GSH-arsenate intermediate. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases.
Probab=96.33 E-value=0.0066 Score=38.14 Aligned_cols=31 Identities=16% Similarity=0.252 Sum_probs=28.5
Q ss_pred eEEecCCCCchHHHHHHHHHHhCCCceEEEc
Q psy2059 3 IDFYYVPGSAPCRAVQLAAAQIGVPLNLKHT 33 (126)
Q Consensus 3 ~~Ly~~~~s~~~~~v~~~l~~~gi~~~~~~v 33 (126)
+++|+.+.|..|++++-.|++.|++|+.+.+
T Consensus 1 i~iy~~~~C~t~rkA~~~L~~~~i~~~~~di 31 (112)
T cd03034 1 ITIYHNPRCSKSRNALALLEEAGIEPEIVEY 31 (112)
T ss_pred CEEEECCCCHHHHHHHHHHHHCCCCeEEEec
Confidence 5899999999999999999999999988665
No 111
>TIGR00014 arsC arsenate reductase (glutaredoxin). composed of two polypeptides, the products of the arsA and arsB genes. The pump alone produces resistance to arsenite and antimonite. This protein, ArsC, catalyzes the reduction of arsenate to arsenite, and thus extends resistance to include arsenate.
Probab=96.28 E-value=0.0072 Score=38.12 Aligned_cols=32 Identities=13% Similarity=0.162 Sum_probs=28.9
Q ss_pred eEEecCCCCchHHHHHHHHHHhCCCceEEEcc
Q psy2059 3 IDFYYVPGSAPCRAVQLAAAQIGVPLNLKHTD 34 (126)
Q Consensus 3 ~~Ly~~~~s~~~~~v~~~l~~~gi~~~~~~v~ 34 (126)
+++|+.+.|..|++++-.|++.|++|+.+.+.
T Consensus 1 i~iy~~~~C~t~rkA~~~L~~~~i~~~~~di~ 32 (114)
T TIGR00014 1 VTIYHNPRCSKSRNTLALLEDKGIEPEVVKYL 32 (114)
T ss_pred CEEEECCCCHHHHHHHHHHHHCCCCeEEEecc
Confidence 58999999999999999999999999876653
No 112
>COG0278 Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=95.98 E-value=0.018 Score=35.41 Aligned_cols=65 Identities=9% Similarity=0.077 Sum_probs=47.3
Q ss_pred CCCCchHHHHHHHHHHhCCCceEEEccCCCCCCCChhHhhhCCCCccceeeeecCCCeeeechHHHHHH
Q psy2059 8 VPGSAPCRAVQLAAAQIGVPLNLKHTDLMKGEHLTPEFLKLNPQHTVPYSQQTNSQEYRREESRAIIAY 76 (126)
Q Consensus 8 ~~~s~~~~~v~~~l~~~gi~~~~~~v~~~~~~~~~~~~~~~~p~~~vP~L~~~~~~~~~l~eS~aI~~y 76 (126)
.|.|+++.++--+|...|. ++...+|......-+....+-+-..++|-| --+|..+..|..|.+-
T Consensus 27 ~P~CGFS~~~vqiL~~~g~-v~~~~vnVL~d~eiR~~lk~~s~WPT~PQL---yi~GEfvGG~DIv~Em 91 (105)
T COG0278 27 FPQCGFSAQAVQILSACGV-VDFAYVDVLQDPEIRQGLKEYSNWPTFPQL---YVNGEFVGGCDIVREM 91 (105)
T ss_pred CCCCCccHHHHHHHHHcCC-cceeEEeeccCHHHHhccHhhcCCCCCcee---eECCEEeccHHHHHHH
Confidence 5789999999999999995 555666666422222333345667899999 8899999998877653
No 113
>TIGR00412 redox_disulf_2 small redox-active disulfide protein 2. This small protein is found in three archaeal species so far (Methanococcus jannaschii, Archeoglobus fulgidus, and Methanobacterium thermoautotrophicum) as well as in Anabaena PCC7120. It is homologous to thioredoxins, glutaredoxins, and protein disulfide isomerases, and shares with them a redox-active disulfide. The redox active disulfide region CXXC motif resembles neither thioredoxin nor glutaredoxin. A closely related protein found in the same three Archaea, described by redox_disulf_1, has a glutaredoxin-like CP[YH]C sequence; it has been characterized in functional assays as redox-active but unlikely to be a thioredoxin or glutaredoxin.
Probab=95.94 E-value=0.07 Score=30.93 Aligned_cols=56 Identities=18% Similarity=0.246 Sum_probs=39.2
Q ss_pred CeeEEecCCCCchHHHH----HHHHHHhCCCceEEEccCCCCCCCChhHhhhCCCCccceeeeecCCCeee
Q psy2059 1 MTIDFYYVPGSAPCRAV----QLAAAQIGVPLNLKHTDLMKGEHLTPEFLKLNPQHTVPYSQQTNSQEYRR 67 (126)
Q Consensus 1 M~~~Ly~~~~s~~~~~v----~~~l~~~gi~~~~~~v~~~~~~~~~~~~~~~~p~~~vP~L~~~~~~~~~l 67 (126)
|.+++|. ++|++|..+ .-++++.|.+++...++- .++ ....-...+|++ .-+|..+
T Consensus 1 m~i~~~a-~~C~~C~~~~~~~~~~~~e~~~~~~~~~v~~------~~~-a~~~~v~~vPti---~i~G~~~ 60 (76)
T TIGR00412 1 MKIQIYG-TGCANCQMTEKNVKKAVEELGIDAEFEKVTD------MNE-ILEAGVTATPGV---AVDGELV 60 (76)
T ss_pred CEEEEEC-CCCcCHHHHHHHHHHHHHHcCCCeEEEEeCC------HHH-HHHcCCCcCCEE---EECCEEE
Confidence 6678887 999999988 668888898888887761 112 222345679999 4466544
No 114
>PF05768 DUF836: Glutaredoxin-like domain (DUF836); InterPro: IPR008554 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This family contains several viral glutaredoxins, and many related bacterial and eukaryotic proteins of unknown function. The best characterised member of this family is G4L (P68460 from SWISSPROT) from Vaccinia virus (strain Western Reserve/WR) (VACV), which is necessary for virion morphogenesis and virus replication []. This is a cytomplasmic protein which functions as a shuttle in a redox pathway between membrane-associated E10R and L1R or F9L []. ; PDB: 1TTZ_A 1XPV_A 2FGX_A 2G2Q_C 1WJK_A.
Probab=95.43 E-value=0.065 Score=31.51 Aligned_cols=54 Identities=19% Similarity=0.416 Sum_probs=38.9
Q ss_pred eEEecCCCCchHHHHHHHHHHhC--CCceEEEccCCCCCCCChhHhhhCCCCccceeeeecCCC
Q psy2059 3 IDFYYVPGSAPCRAVQLAAAQIG--VPLNLKHTDLMKGEHLTPEFLKLNPQHTVPYSQQTNSQE 64 (126)
Q Consensus 3 ~~Ly~~~~s~~~~~v~~~l~~~g--i~~~~~~v~~~~~~~~~~~~~~~~p~~~vP~L~~~~~~~ 64 (126)
++||+.++|+-|..+.-+|+... .+++...+|.. ..+++...-- -.|||| ..+|
T Consensus 2 l~l~~k~~C~LC~~a~~~L~~~~~~~~~~l~~vDI~----~d~~l~~~Y~-~~IPVl---~~~~ 57 (81)
T PF05768_consen 2 LTLYTKPGCHLCDEAKEILEEVAAEFPFELEEVDID----EDPELFEKYG-YRIPVL---HIDG 57 (81)
T ss_dssp EEEEE-SSSHHHHHHHHHHHHCCTTSTCEEEEEETT----TTHHHHHHSC-TSTSEE---EETT
T ss_pred EEEEcCCCCChHHHHHHHHHHHHhhcCceEEEEECC----CCHHHHHHhc-CCCCEE---EEcC
Confidence 68999999999999999999654 56677778776 3444444333 489999 5544
No 115
>PF11287 DUF3088: Protein of unknown function (DUF3088); InterPro: IPR021439 This family of proteins with unknown function appears to be restricted to Proteobacteria.
Probab=95.34 E-value=0.049 Score=34.20 Aligned_cols=69 Identities=20% Similarity=0.308 Sum_probs=44.5
Q ss_pred CCchHHHHHHHHHH---hCCCceEEEccCCCCCCCChhHh-hhCC-CCccceeeeecCCCe-------------eeechH
Q psy2059 10 GSAPCRAVQLAAAQ---IGVPLNLKHTDLMKGEHLTPEFL-KLNP-QHTVPYSQQTNSQEY-------------RREESR 71 (126)
Q Consensus 10 ~s~~~~~v~~~l~~---~gi~~~~~~v~~~~~~~~~~~~~-~~~p-~~~vP~L~~~~~~~~-------------~l~eS~ 71 (126)
.|+.|..+.=+|.. ..-..+++.|++.+ -..+.. .+.. +..+|+|| ..+|. .|.++.
T Consensus 23 ~Cp~c~~iEGlLa~~P~l~~~ldV~rV~f~R---PR~~vi~llGE~~QslPvLV--L~~~~~~~~~~~~~~~~rfi~d~~ 97 (112)
T PF11287_consen 23 YCPHCAAIEGLLASFPDLRERLDVRRVDFPR---PRQAVIALLGEANQSLPVLV--LADGAPSPDDAGSHGGRRFIDDPR 97 (112)
T ss_pred ECCchHHHHhHHhhChhhhhcccEEEeCCCC---chHHHHHHhChhccCCCEEE--eCCCCCCcccccccCCeEEeCCHH
Confidence 36666666655543 33345666777765 223333 2232 56799997 44444 799999
Q ss_pred HHHHHHHHHhCC
Q psy2059 72 AIIAYLAEQYGK 83 (126)
Q Consensus 72 aI~~yL~~~~~~ 83 (126)
.|++||+++|+-
T Consensus 98 ~I~~~La~r~g~ 109 (112)
T PF11287_consen 98 RILRYLAERHGF 109 (112)
T ss_pred HHHHHHHHHcCC
Confidence 999999999974
No 116
>PF04908 SH3BGR: SH3-binding, glutamic acid-rich protein; InterPro: IPR006993 This family of proteins, which contains SH3BGRL3, is functionally uncharacterised. SH3BGRL3 is a highly conserved small protein, which is widely expressed and shows a significant similarity to glutaredoxin 1 (GRX1) of Escherichia coli which is predicted to belong to the thioredoxin superfamily. However, SH3BGRL3 lacks both conserved cysteine residues, which characterise the enzymatic active site of GRX. This structural feature raises the possibility that SH3BGRL3 and its homologues could function as endogenous modulators of GRX activity []. ; PDB: 1SJ6_A 1U6T_A 1WRY_A 1T1V_B 1J0F_A 2CT6_A.
Probab=94.40 E-value=0.058 Score=33.28 Aligned_cols=68 Identities=12% Similarity=0.048 Sum_probs=38.4
Q ss_pred CeeEEecCCCCch------HHHHHHHHHHhCCCceEEEccCCCCCCCChhHhhhC---------CCCccceeeeecCCCe
Q psy2059 1 MTIDFYYVPGSAP------CRAVQLAAAQIGVPLNLKHTDLMKGEHLTPEFLKLN---------PQHTVPYSQQTNSQEY 65 (126)
Q Consensus 1 M~~~Ly~~~~s~~------~~~v~~~l~~~gi~~~~~~v~~~~~~~~~~~~~~~~---------p~~~vP~L~~~~~~~~ 65 (126)
|.+++|....+++ .+++..+|+.++|+|+.+.+... +......++.. +..-.|-+ ..||.
T Consensus 1 m~I~vy~ss~sg~~~ikk~q~~v~~iL~a~kI~fe~vDIa~~--e~~r~~mr~~~g~~~~~~~~~~~lpPqi---F~~~~ 75 (99)
T PF04908_consen 1 MVIKVYISSISGSREIKKRQQRVLMILEAKKIPFEEVDIAMD--EEARQWMRENAGPEEKDPGNGKPLPPQI---FNGDE 75 (99)
T ss_dssp -SEEEEE-SS-SSHHHHHHHHHHHHHHHHTT--EEEEETTT---HHHHHHHHHHT--CCCS-TSTT--S-EE---EETTE
T ss_pred CEEEEEEecccCCHHHHHHHHHHHHHHHHcCCCcEEEeCcCC--HHHHHHHHHhccccccCCCCCCCCCCEE---EeCCE
Confidence 7789999887764 44888999999999998777552 22333444333 12224677 67777
Q ss_pred eeechHHH
Q psy2059 66 RREESRAI 73 (126)
Q Consensus 66 ~l~eS~aI 73 (126)
.+.+=-.+
T Consensus 76 Y~Gdye~f 83 (99)
T PF04908_consen 76 YCGDYEDF 83 (99)
T ss_dssp EEEEHHHH
T ss_pred EEeeHHHH
Confidence 66654433
No 117
>PF13192 Thioredoxin_3: Thioredoxin domain; PDB: 1ZYP_B 1ZYN_A 1HYU_A 1ILO_A 1J08_F 2YWM_B 2AYT_B 2HLS_B 1A8L_A 2K8S_B ....
Probab=94.35 E-value=0.2 Score=28.99 Aligned_cols=57 Identities=19% Similarity=0.229 Sum_probs=35.0
Q ss_pred CeeEEecCCCCchHHHHHH----HHHHhCCCceEEEccCCCCCCCChhHhhhCCCCccceeeeecCCCeeee
Q psy2059 1 MTIDFYYVPGSAPCRAVQL----AAAQIGVPLNLKHTDLMKGEHLTPEFLKLNPQHTVPYSQQTNSQEYRRE 68 (126)
Q Consensus 1 M~~~Ly~~~~s~~~~~v~~----~l~~~gi~~~~~~v~~~~~~~~~~~~~~~~p~~~vP~L~~~~~~~~~l~ 68 (126)
|.+++ ..+.|++|.++.- ++...|+.++...+ . ..++. .......+|++ .-||...+
T Consensus 1 m~I~v-~~~~C~~C~~~~~~~~~~~~~~~i~~ei~~~--~----~~~~~-~~ygv~~vPal---vIng~~~~ 61 (76)
T PF13192_consen 1 MKIKV-FSPGCPYCPELVQLLKEAAEELGIEVEIIDI--E----DFEEI-EKYGVMSVPAL---VINGKVVF 61 (76)
T ss_dssp EEEEE-ECSSCTTHHHHHHHHHHHHHHTTEEEEEEET--T----THHHH-HHTT-SSSSEE---EETTEEEE
T ss_pred CEEEE-eCCCCCCcHHHHHHHHHHHHhcCCeEEEEEc--c----CHHHH-HHcCCCCCCEE---EECCEEEE
Confidence 56778 5666999996654 55556766655543 1 22333 55567789999 55555443
No 118
>TIGR00411 redox_disulf_1 small redox-active disulfide protein 1. This protein is homologous to a family of proteins that includes thioredoxins, glutaredoxins, protein-disulfide isomerases, and others, some of which have several such domains. The sequence of this protein at the redox-active disufide site, CPYC, matches glutaredoxins rather than thioredoxins, although its overall sequence seems closer to thioredoxins. It is suggested to be a ribonucleotide-reducing system component distinct from thioredoxin or glutaredoxin.
Probab=94.29 E-value=0.26 Score=28.32 Aligned_cols=52 Identities=17% Similarity=0.315 Sum_probs=36.2
Q ss_pred eEEecCCCCchHHHHHHHHHH----hCCCceEEEccCCCCCCCChhHhhhCCCCccceee
Q psy2059 3 IDFYYVPGSAPCRAVQLAAAQ----IGVPLNLKHTDLMKGEHLTPEFLKLNPQHTVPYSQ 58 (126)
Q Consensus 3 ~~Ly~~~~s~~~~~v~~~l~~----~gi~~~~~~v~~~~~~~~~~~~~~~~p~~~vP~L~ 58 (126)
+++|+.+.|++|..+.-.++. .+..++...+|... .++..+......+|+++
T Consensus 3 v~~f~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~vd~~~----~~~~~~~~~v~~vPt~~ 58 (82)
T TIGR00411 3 IELFTSPTCPYCPAAKRVVEEVAKEMGDAVEVEYINVME----NPQKAMEYGIMAVPAIV 58 (82)
T ss_pred EEEEECCCCcchHHHHHHHHHHHHHhcCceEEEEEeCcc----CHHHHHHcCCccCCEEE
Confidence 679999999999988777653 45456667777642 33444445566799994
No 119
>PHA02125 thioredoxin-like protein
Probab=93.67 E-value=0.32 Score=27.94 Aligned_cols=49 Identities=18% Similarity=0.159 Sum_probs=36.2
Q ss_pred eEEecCCCCchHHHHHHHHHHhCCCceEEEccCCCCCCCChhHhhhCCCCcccee
Q psy2059 3 IDFYYVPGSAPCRAVQLAAAQIGVPLNLKHTDLMKGEHLTPEFLKLNPQHTVPYS 57 (126)
Q Consensus 3 ~~Ly~~~~s~~~~~v~~~l~~~gi~~~~~~v~~~~~~~~~~~~~~~~p~~~vP~L 57 (126)
+.+|+.+.|+.|..+.-.|+. +.++...+|.. ..++..+...-..+|++
T Consensus 2 iv~f~a~wC~~Ck~~~~~l~~--~~~~~~~vd~~----~~~~l~~~~~v~~~PT~ 50 (75)
T PHA02125 2 IYLFGAEWCANCKMVKPMLAN--VEYTYVDVDTD----EGVELTAKHHIRSLPTL 50 (75)
T ss_pred EEEEECCCCHhHHHHHHHHHH--HhheEEeeeCC----CCHHHHHHcCCceeCeE
Confidence 688999999999988877764 45666666643 24566666667789999
No 120
>PF03960 ArsC: ArsC family; InterPro: IPR006660 Several bacterial taxon have a chromosomal resistance system, encoded by the ars operon, for the detoxification of arsenate, arsenite, and antimonite []. This system transports arsenite and antimonite out of the cell. The pump is composed of two polypeptides, the products of the arsA and arsB genes. This two-subunit enzyme produces resistance to arsenite and antimonite. Arsenate, however, must first be reduced to arsenite before it is extruded. A third gene, arsC, expands the substrate specificity to allow for arsenate pumping and resistance. ArsC is an approximately 150-residue arsenate reductase that uses reduced glutathione (GSH) to convert arsenate to arsenite with a redox active cysteine residue in the active site. ArsC forms an active quaternary complex with GSH, arsenate, and glutaredoxin 1 (Grx1). The three ligands must be present simultaneously for reduction to occur []. The arsC family also comprises the Spx proteins which are GRAM-positive bacterial transcription factors that regulate the transcription of multiple genes in response to disulphide stress []. The arsC protein structure has been solved []. It belongs to the thioredoxin superfamily fold which is defined by a beta-sheet core surrounded by alpha-helices. The active cysteine residue of ArsC is located in the loop between the first beta-strand and the first helix, which is also conserved in the Spx protein and its homologues.; PDB: 2KOK_A 1SK1_A 1SK2_A 1JZW_A 1J9B_A 1S3C_A 1SD8_A 1SD9_A 1I9D_A 1SK0_A ....
Probab=93.64 E-value=0.09 Score=32.72 Aligned_cols=29 Identities=17% Similarity=0.303 Sum_probs=22.3
Q ss_pred ecCCCCchHHHHHHHHHHhCCCceEEEcc
Q psy2059 6 YYVPGSAPCRAVQLAAAQIGVPLNLKHTD 34 (126)
Q Consensus 6 y~~~~s~~~~~v~~~l~~~gi~~~~~~v~ 34 (126)
|+.+.|..|++++-.|++.|++|+.+.+.
T Consensus 1 Y~~~~C~t~rka~~~L~~~gi~~~~~d~~ 29 (110)
T PF03960_consen 1 YGNPNCSTCRKALKWLEENGIEYEFIDYK 29 (110)
T ss_dssp EE-TT-HHHHHHHHHHHHTT--EEEEETT
T ss_pred CcCCCCHHHHHHHHHHHHcCCCeEeehhh
Confidence 78999999999999999999999886653
No 121
>cd01659 TRX_superfamily Thioredoxin (TRX) superfamily; a large, diverse group of proteins containing a TRX-fold. Many members contain a classic TRX domain with a redox active CXXC motif. They function as protein disulfide oxidoreductases (PDOs), altering the redox state of target proteins via the reversible oxidation of their active site dithiol. The PDO members of this superfamily include TRX, protein disulfide isomerase (PDI), tlpA-like, glutaredoxin, NrdH redoxin, and the bacterial Dsb (DsbA, DsbC, DsbG, DsbE, DsbDgamma) protein families. Members of the superfamily that do not function as PDOs but contain a TRX-fold domain include phosducins, peroxiredoxins and glutathione (GSH) peroxidases, SCO proteins, GSH transferases (GST, N-terminal domain), arsenic reductases, TRX-like ferredoxins and calsequestrin, among others.
Probab=93.55 E-value=0.21 Score=26.00 Aligned_cols=55 Identities=18% Similarity=0.253 Sum_probs=34.3
Q ss_pred eEEecCCCCchHHHHHHHHHH---hCCCceEEEccCCCCCCCChhHhhhCCCCccceee
Q psy2059 3 IDFYYVPGSAPCRAVQLAAAQ---IGVPLNLKHTDLMKGEHLTPEFLKLNPQHTVPYSQ 58 (126)
Q Consensus 3 ~~Ly~~~~s~~~~~v~~~l~~---~gi~~~~~~v~~~~~~~~~~~~~~~~p~~~vP~L~ 58 (126)
+.+|+...|+.|.+++..+.. .+-.++...++..... ........++...+|+++
T Consensus 1 l~~~~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~P~~~ 58 (69)
T cd01659 1 LVLFYAPWCPFCQALRPVLAELALLNKGVKFEAVDVDEDP-ALEKELKRYGVGGVPTLV 58 (69)
T ss_pred CEEEECCCChhHHhhhhHHHHHHhhCCCcEEEEEEcCCCh-HHhhHHHhCCCccccEEE
Confidence 357788889999999988883 2334444445443311 111223467888999984
No 122
>cd03200 GST_C_JTV1 GST_C family, JTV-1 subfamily; composed of uncharacterized proteins with similarity to the translation product of the human JTV-1 gene. Human JTV-1, a gene of unknown function, initiates within the human PMS2 gene promoter, but is transcribed from the opposite strand. PMS2 encodes a protein involved in DNA mismatch repair and is mutated in a subset of patients with hereditary nonpolyposis colon cancer. It is unknown whether the expression of JTV-1 affects that of PMS2, or vice versa, as a result of their juxtaposition. JTV-1 is up-regulated while PMS2 is down-regulated in tumor cell spheroids that show increased resistance to anticancer cytotoxic drugs compared with tumor cell monolayers indicating that suppressed DNA mismatch repair may be a mechanism for multicellular resistance to alkylating agents.
Probab=92.69 E-value=0.096 Score=31.79 Aligned_cols=32 Identities=19% Similarity=0.184 Sum_probs=26.2
Q ss_pred HHHHHHHhCCCCCCCCCCHHHHHHHHHHHhhhcccc
Q psy2059 74 IAYLAEQYGKDDSLYPKDPKARGIVNQRLYFDIGTL 109 (126)
Q Consensus 74 ~~yL~~~~~~~~~l~p~~~~~~~~~~~wl~~~~~~~ 109 (126)
++||++.- + ++|.++.+++++++|+++....+
T Consensus 1 ~r~~~~~~---~-~~~~~~~~~~~vd~~~d~~~~~l 32 (96)
T cd03200 1 ARFLYRLL---G-PAPNAPNAATNIDSWVDTAIFQL 32 (96)
T ss_pred CchHHHHh---c-ccCCCchHHHHHHHHHHHHHHHH
Confidence 47899882 2 99999999999999999776444
No 123
>cd03026 AhpF_NTD_C TRX-GRX-like family, Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) subfamily, C-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which then reduces hydrogen peroxide and organic hydroperoxides. AhpF contains an NTD containing two contiguous TRX-fold subdomains similar to Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). It also contains a catalytic core similar to TRX reductase containing FAD and NADH binding domains with an active site disulfide. The proposed mechanism of action of AhpF is similar to a TRX/TRX reductase system. The flow of reducing equivalents goes from NADH - catalytic core of AhpF - NTD of AhpF - AhpC - peroxide substrates. The catalytic CXXC motif of the NTD of AhpF is contained in its C-terminal TRX subdomain.
Probab=92.68 E-value=0.54 Score=28.17 Aligned_cols=57 Identities=14% Similarity=0.063 Sum_probs=37.1
Q ss_pred eEEecCCCCchHHHHHHHHHHh-----CCCceEEEccCCCCCCCChhHhhhCCCCccceeeeecCCCeeee
Q psy2059 3 IDFYYVPGSAPCRAVQLAAAQI-----GVPLNLKHTDLMKGEHLTPEFLKLNPQHTVPYSQQTNSQEYRRE 68 (126)
Q Consensus 3 ~~Ly~~~~s~~~~~v~~~l~~~-----gi~~~~~~v~~~~~~~~~~~~~~~~p~~~vP~L~~~~~~~~~l~ 68 (126)
+.+|..+.|++|..+.-++++. ++.++. +|.. ..++......-..+|++ .-||..+.
T Consensus 16 i~~F~~~~C~~C~~~~~~~~~l~~~~~~i~~~~--vd~~----~~~e~a~~~~V~~vPt~---vidG~~~~ 77 (89)
T cd03026 16 FETYVSLSCHNCPDVVQALNLMAVLNPNIEHEM--IDGA----LFQDEVEERGIMSVPAI---FLNGELFG 77 (89)
T ss_pred EEEEECCCCCCcHHHHHHHHHHHHHCCCceEEE--EEhH----hCHHHHHHcCCccCCEE---EECCEEEE
Confidence 7899999999999887766664 445544 4433 23444555556679999 44555443
No 124
>PF09635 MetRS-N: MetRS-N binding domain; InterPro: IPR018285 This entry represents the N-terminal domain of methionyl-tRNA synthetase (MetRS). This N-terminal appended domain mediates non-catalytic complex formation through its interaction with a domain in the tRNA aminoacylation cofactor Arc1p. The interacting domains of MetRS, GluRS (glutamyl-tRNA synthetase) and Arc1p form a ternary complex resembling a classical GST homo-dimer []. Domain-swapping between symmetrically related MetRS-N and Arc1p-N domains generates a 2:2 tetramer held together by van der Waals forces. This domain is necessary for formation of the aminoacyl-tRNA synthetase complex necessary for tRNA nuclear export and shuttling as part of the translational apparatus. ; PDB: 2HSN_A.
Probab=91.23 E-value=0.1 Score=33.28 Aligned_cols=31 Identities=23% Similarity=0.412 Sum_probs=14.1
Q ss_pred ccceeeeecCCCeeeechHHHHHHHHHHhCCC
Q psy2059 53 TVPYSQQTNSQEYRREESRAIIAYLAEQYGKD 84 (126)
Q Consensus 53 ~vP~L~~~~~~~~~l~eS~aI~~yL~~~~~~~ 84 (126)
.-|-|. +..+|+.+.|++||++|+.+-|.+.
T Consensus 35 ~~~~L~-~~~~gF~L~e~NAIvrYl~nDF~~~ 65 (122)
T PF09635_consen 35 SGPLLK-DKKSGFELFEPNAIVRYLANDFEGQ 65 (122)
T ss_dssp -S--EE-E-S--S----HHHHHHHHTT--TTT
T ss_pred ccceee-ecCCceEEecccHHHHHHHhhcCCc
Confidence 336661 1348899999999999999877643
No 125
>KOG0911|consensus
Probab=78.04 E-value=4.2 Score=28.78 Aligned_cols=65 Identities=11% Similarity=0.005 Sum_probs=46.5
Q ss_pred CCCCchHHHHHHHHHHhCCCceEEEccCCCCCCCChhHhhhCCCCccceeeeecCCCeeeechHHHHHHH
Q psy2059 8 VPGSAPCRAVQLAAAQIGVPLNLKHTDLMKGEHLTPEFLKLNPQHTVPYSQQTNSQEYRREESRAIIAYL 77 (126)
Q Consensus 8 ~~~s~~~~~v~~~l~~~gi~~~~~~v~~~~~~~~~~~~~~~~p~~~vP~L~~~~~~~~~l~eS~aI~~yL 77 (126)
.|.|++++++.-+|...|++|....| ...+.-+.-..+.+-..++|-| --+|..+..+..|..-+
T Consensus 151 ~P~CGFS~~~v~iL~~~nV~~~~fdI--L~DeelRqglK~fSdWPTfPQl---yI~GEFiGGlDIl~~m~ 215 (227)
T KOG0911|consen 151 EPKCGFSRQLVGILQSHNVNYTIFDV--LTDEELRQGLKEFSDWPTFPQL---YVKGEFIGGLDILKEMH 215 (227)
T ss_pred cccccccHHHHHHHHHcCCCeeEEec--cCCHHHHHHhhhhcCCCCccce---eECCEeccCcHHHHHHh
Confidence 57899999999999999999876555 3222222233355668889988 88888888777665433
No 126
>KOG1147|consensus
Probab=77.45 E-value=5.4 Score=32.09 Aligned_cols=46 Identities=15% Similarity=0.169 Sum_probs=31.8
Q ss_pred cCCCeeeechHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHhhhcc
Q psy2059 61 NSQEYRREESRAIIAYLAEQYGKDDSLYPKDPKARGIVNQRLYFDIG 107 (126)
Q Consensus 61 ~~~~~~l~eS~aI~~yL~~~~~~~~~l~p~~~~~~~~~~~wl~~~~~ 107 (126)
..+|..+..+..+..|.+........+|+.+ .++++++.|++|+.+
T Consensus 42 ~~d~~~l~~a~~~~~~~~~~~~~~~~lf~~~-~d~~~vd~w~~~s~~ 87 (712)
T KOG1147|consen 42 FLDGRKLNGATEPVVYSAALAKADPKLFGNN-IDRSQVDHWVSFSST 87 (712)
T ss_pred ccccccccCCccchhhhhhhcccCHhHcCCc-ccHHHHHHHHHHhhh
Confidence 4455556666666666664443333488866 899999999999866
No 127
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=74.24 E-value=3 Score=32.87 Aligned_cols=70 Identities=17% Similarity=0.118 Sum_probs=43.3
Q ss_pred eEEecCCCCchHHHHHHHHHHhCC---CceEEEccCCCCCCCChhHhhhCCCCccceeeeecCCCeeeec----hHHHHH
Q psy2059 3 IDFYYVPGSAPCRAVQLAAAQIGV---PLNLKHTDLMKGEHLTPEFLKLNPQHTVPYSQQTNSQEYRREE----SRAIIA 75 (126)
Q Consensus 3 ~~Ly~~~~s~~~~~v~~~l~~~gi---~~~~~~v~~~~~~~~~~~~~~~~p~~~vP~L~~~~~~~~~l~e----S~aI~~ 75 (126)
+++|..+.||+|..+.-+++..-+ .++...+|- ...+++....-...||.+ .-+|..+.+ -..++.
T Consensus 120 i~~fv~~~Cp~Cp~~v~~~~~~a~~~~~i~~~~id~----~~~~~~~~~~~v~~VP~~---~i~~~~~~~g~~~~~~~~~ 192 (517)
T PRK15317 120 FETYVSLSCHNCPDVVQALNLMAVLNPNITHTMIDG----ALFQDEVEARNIMAVPTV---FLNGEEFGQGRMTLEEILA 192 (517)
T ss_pred EEEEEcCCCCCcHHHHHHHHHHHHhCCCceEEEEEc----hhCHhHHHhcCCcccCEE---EECCcEEEecCCCHHHHHH
Confidence 789999999999987766655433 233333332 345676666667789999 555544443 234555
Q ss_pred HHHH
Q psy2059 76 YLAE 79 (126)
Q Consensus 76 yL~~ 79 (126)
.+.+
T Consensus 193 ~~~~ 196 (517)
T PRK15317 193 KLDT 196 (517)
T ss_pred HHhc
Confidence 5544
No 128
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=72.03 E-value=3.2 Score=32.77 Aligned_cols=60 Identities=15% Similarity=0.075 Sum_probs=38.6
Q ss_pred eEEecCCCCchHHHHHHHHHHhCCC---ceEEEccCCCCCCCChhHhhhCCCCccceeeeecCCCeeeec
Q psy2059 3 IDFYYVPGSAPCRAVQLAAAQIGVP---LNLKHTDLMKGEHLTPEFLKLNPQHTVPYSQQTNSQEYRREE 69 (126)
Q Consensus 3 ~~Ly~~~~s~~~~~v~~~l~~~gi~---~~~~~v~~~~~~~~~~~~~~~~p~~~vP~L~~~~~~~~~l~e 69 (126)
+++|..+.||+|..+.-+++...+. ++...+|- ...++.....-...||.+ .-+|..+.+
T Consensus 121 i~~f~~~~Cp~Cp~~v~~~~~~a~~~p~i~~~~id~----~~~~~~~~~~~v~~VP~~---~i~~~~~~~ 183 (515)
T TIGR03140 121 FETYVSLTCQNCPDVVQALNQMALLNPNISHTMIDG----ALFQDEVEALGIQGVPAV---FLNGEEFHN 183 (515)
T ss_pred EEEEEeCCCCCCHHHHHHHHHHHHhCCCceEEEEEc----hhCHHHHHhcCCcccCEE---EECCcEEEe
Confidence 7899999999999887666654432 33333332 245666666666789999 545544444
No 129
>cd02953 DsbDgamma DsbD gamma family; DsbD gamma is the C-terminal periplasmic domain of the bacterial protein DsbD. It contains a CXXC motif in a TRX fold and shuttles the reducing potential from the membrane domain (DsbD beta) to the N-terminal periplasmic domain (DsbD alpha). DsbD beta, a transmembrane domain comprising of eight helices, acquires its reducing potential from the cytoplasmic thioredoxin. DsbD alpha transfers the acquired reducing potential from DsbD gamma to target proteins such as the periplasmic protein disulphide isomerases, DsbC and DsbG. This flow of reducing potential from the cytoplasm through DsbD allows DsbC and DsbG to act as isomerases in the oxidizing environment of the bacterial periplasm. DsbD also transfers reducing potential from the cytoplasm to specific reductases in the periplasm which are involved in the maturation of cytochromes.
Probab=71.93 E-value=11 Score=22.55 Aligned_cols=56 Identities=14% Similarity=0.085 Sum_probs=33.2
Q ss_pred eEEecCCCCchHHHHHHHH-------HHhCCCceEEEccCCCCCCCChhHhhhCCCCccceee
Q psy2059 3 IDFYYVPGSAPCRAVQLAA-------AQIGVPLNLKHTDLMKGEHLTPEFLKLNPQHTVPYSQ 58 (126)
Q Consensus 3 ~~Ly~~~~s~~~~~v~~~l-------~~~gi~~~~~~v~~~~~~~~~~~~~~~~p~~~vP~L~ 58 (126)
+..|+.+.|+.|....-.+ +..+-.+....+|........+++.+......+|++.
T Consensus 15 lv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~~~~~i~~~Pti~ 77 (104)
T cd02953 15 FVDFTADWCVTCKVNEKVVFSDPEVQAALKKDVVLLRADWTKNDPEITALLKRFGVFGPPTYL 77 (104)
T ss_pred EEEEEcchhHHHHHHHHHhcCCHHHHHHHhCCeEEEEEecCCCCHHHHHHHHHcCCCCCCEEE
Confidence 4567788999999765332 2212156666666653222235566556667799774
No 130
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=70.95 E-value=13 Score=29.75 Aligned_cols=55 Identities=16% Similarity=0.131 Sum_probs=35.8
Q ss_pred eEEecCCCCchHHHHHH----HHHHh-CCCceEEEccCCCCCCCChhHhhhCCCCccceeeeecCCCee
Q psy2059 3 IDFYYVPGSAPCRAVQL----AAAQI-GVPLNLKHTDLMKGEHLTPEFLKLNPQHTVPYSQQTNSQEYR 66 (126)
Q Consensus 3 ~~Ly~~~~s~~~~~v~~----~l~~~-gi~~~~~~v~~~~~~~~~~~~~~~~p~~~vP~L~~~~~~~~~ 66 (126)
+++|..+.||+|..+.- ++.+. ++..+.+.+. ..++......-..+|.+ .-||..
T Consensus 480 i~v~~~~~C~~Cp~~~~~~~~~~~~~~~i~~~~i~~~------~~~~~~~~~~v~~vP~~---~i~~~~ 539 (555)
T TIGR03143 480 IKIGVSLSCTLCPDVVLAAQRIASLNPNVEAEMIDVS------HFPDLKDEYGIMSVPAI---VVDDQQ 539 (555)
T ss_pred EEEEECCCCCCcHHHHHHHHHHHHhCCCceEEEEECc------ccHHHHHhCCceecCEE---EECCEE
Confidence 68899999999987654 33444 5666665553 23555545556789999 544443
No 131
>cd02975 PfPDO_like_N Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO)-like family, N-terminal TRX-fold subdomain; composed of proteins with similarity to PfPDO, a redox active thermostable protein believed to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI), which are both involved in oxidative protein folding. PfPDO contains two redox active CXXC motifs in two contiguous TRX-fold subdomains. The active site in the N-terminal TRX-fold subdomain is required for isomerase but not for reductase activity of PfPDO. The exclusive presence of PfPDO-like proteins in extremophiles may suggest that they have a special role in adaptation to extreme conditions.
Probab=69.62 E-value=18 Score=22.37 Aligned_cols=51 Identities=16% Similarity=0.137 Sum_probs=33.0
Q ss_pred EEe-cCCCCchHHHHHHHHHHhCCC---ceEEEccCCCCCCCChhHhhhCCCCccceee
Q psy2059 4 DFY-YVPGSAPCRAVQLAAAQIGVP---LNLKHTDLMKGEHLTPEFLKLNPQHTVPYSQ 58 (126)
Q Consensus 4 ~Ly-~~~~s~~~~~v~~~l~~~gi~---~~~~~v~~~~~~~~~~~~~~~~p~~~vP~L~ 58 (126)
.++ +.++|++|..++-++++..-. ++...+|.. ..++......-..+|++.
T Consensus 26 vv~f~a~wC~~C~~~~~~l~~la~~~~~i~~~~vd~d----~~~~l~~~~~v~~vPt~~ 80 (113)
T cd02975 26 VVFSSKEGCQYCEVTKQLLEELSELSDKLKLEIYDFD----EDKEKAEKYGVERVPTTI 80 (113)
T ss_pred EEEeCCCCCCChHHHHHHHHHHHHhcCceEEEEEeCC----cCHHHHHHcCCCcCCEEE
Confidence 344 668999999887777654422 344555544 345666666677899884
No 132
>PRK09266 hypothetical protein; Provisional
Probab=66.37 E-value=7.1 Score=27.98 Aligned_cols=62 Identities=15% Similarity=0.205 Sum_probs=42.4
Q ss_pred HHHHhCCCceEEEccCCCCCCCChhHhhhCCCCccceeeeecCCCeeeechHHHHHHHHHHhCCC
Q psy2059 20 AAAQIGVPLNLKHTDLMKGEHLTPEFLKLNPQHTVPYSQQTNSQEYRREESRAIIAYLAEQYGKD 84 (126)
Q Consensus 20 ~l~~~gi~~~~~~v~~~~~~~~~~~~~~~~p~~~vP~L~~~~~~~~~l~eS~aI~~yL~~~~~~~ 84 (126)
.++..|++++...+....-....+-|+-.+-.|-+||- .-|+..+.....+.+.|.+.|..+
T Consensus 200 ~~~~~g~~v~e~~i~~~eL~~adevfltnSl~gi~pV~---~i~~~~~~~~~~~~~~l~~~~~~~ 261 (266)
T PRK09266 200 GLERLGIPQRTRPVTLADLGRFAGAFACNAWRGQRAVS---AIDDVALPDSHALLELLRRAYEAE 261 (266)
T ss_pred HHHHcCCeeEEEECCHHHHHHhhHhhhhcCccceEEEE---EECCEECCCCchHHHHHHHHHHhc
Confidence 45667899988888764322333455555557889998 667776655568888888877544
No 133
>TIGR02187 GlrX_arch Glutaredoxin-like domain protein. This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.
Probab=65.23 E-value=42 Score=23.18 Aligned_cols=52 Identities=15% Similarity=0.219 Sum_probs=33.9
Q ss_pred eEEecCCCCchHHHHHHHHHHhCC---CceEEEccCCCCCCCChhHhhhCCCCccceee
Q psy2059 3 IDFYYVPGSAPCRAVQLAAAQIGV---PLNLKHTDLMKGEHLTPEFLKLNPQHTVPYSQ 58 (126)
Q Consensus 3 ~~Ly~~~~s~~~~~v~~~l~~~gi---~~~~~~v~~~~~~~~~~~~~~~~p~~~vP~L~ 58 (126)
+++|+.+.|++|..+.-+++..-. .+....+|.. ..++..+...-..+|+++
T Consensus 137 I~~F~a~~C~~C~~~~~~l~~l~~~~~~i~~~~vD~~----~~~~~~~~~~V~~vPtl~ 191 (215)
T TIGR02187 137 IEVFVTPTCPYCPYAVLMAHKFALANDKILGEMIEAN----ENPDLAEKYGVMSVPKIV 191 (215)
T ss_pred EEEEECCCCCCcHHHHHHHHHHHHhcCceEEEEEeCC----CCHHHHHHhCCccCCEEE
Confidence 567889999999988777665321 2333445543 345555555666799995
No 134
>PF04134 DUF393: Protein of unknown function, DUF393; InterPro: IPR007263 The DCC family, named after the conserved N-terminal DxxCxxC motif, encompasses COG3011 from COG. Proteins in this family are predicted to have a thioredoxin-like fold which, together with the presence of an invariant catalytic cysteine residue, suggests that they are a novel group of thiol-disulphide oxidoreductases []. As some of the bacterial proteins are encoded near penicillin-binding proteins, it has been suggested that these may be involved in redox regulation of cell wall biosynthesis [].
Probab=65.12 E-value=29 Score=21.15 Aligned_cols=72 Identities=14% Similarity=0.153 Sum_probs=40.8
Q ss_pred EecCCCCchHHHHHHHHHHhCCCceEEEccCCCCCCCC-hhHhhhCC---CCccceeeeecCCCeeeechHHHHHHHHH
Q psy2059 5 FYYVPGSAPCRAVQLAAAQIGVPLNLKHTDLMKGEHLT-PEFLKLNP---QHTVPYSQQTNSQEYRREESRAIIAYLAE 79 (126)
Q Consensus 5 Ly~~~~s~~~~~v~~~l~~~gi~~~~~~v~~~~~~~~~-~~~~~~~p---~~~vP~L~~~~~~~~~l~eS~aI~~yL~~ 79 (126)
|++...||.|....-.+...+..-....++........ .+...+++ ...+-++ .+|+....++.|+.+-+..
T Consensus 1 v~YDg~C~lC~~~~~~l~~~d~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~---~~g~~~~~G~~A~~~l~~~ 76 (114)
T PF04134_consen 1 VFYDGDCPLCRREVRFLRRRDRGGRLRFVDIQSEPDQALLASYGISPEDADSRLHLI---DDGERVYRGSDAVLRLLRR 76 (114)
T ss_pred CEECCCCHhHHHHHHHHHhcCCCCCEEEEECCChhhhhHHHhcCcCHHHHcCeeEEe---cCCCEEEEcHHHHHHHHHH
Confidence 46778899999888777777754444555552211111 11122221 2233322 3444599999999987665
No 135
>COG3019 Predicted metal-binding protein [General function prediction only]
Probab=63.25 E-value=15 Score=24.25 Aligned_cols=70 Identities=21% Similarity=0.266 Sum_probs=44.8
Q ss_pred eEEecCCCCchHHHHHHHHHHhCCCceEEEccCCCCCCCChhHhh-hC-C--CCccceeeeecCCCeeeec---hHHHHH
Q psy2059 3 IDFYYVPGSAPCRAVQLAAAQIGVPLNLKHTDLMKGEHLTPEFLK-LN-P--QHTVPYSQQTNSQEYRREE---SRAIIA 75 (126)
Q Consensus 3 ~~Ly~~~~s~~~~~v~~~l~~~gi~~~~~~v~~~~~~~~~~~~~~-~~-p--~~~vP~L~~~~~~~~~l~e---S~aI~~ 75 (126)
+.+|.+|.|..|..-.-.++.+|..+..+..+-. ...++ .. | ++..-+. +.+|..+-. -.+|.+
T Consensus 28 ~~vyksPnCGCC~~w~~~mk~~Gf~Vk~~~~~d~------~alK~~~gIp~e~~SCHT~---VI~Gy~vEGHVPa~aI~~ 98 (149)
T COG3019 28 MVVYKSPNCGCCDEWAQHMKANGFEVKVVETDDF------LALKRRLGIPYEMQSCHTA---VINGYYVEGHVPAEAIAR 98 (149)
T ss_pred EEEEeCCCCccHHHHHHHHHhCCcEEEEeecCcH------HHHHHhcCCChhhccccEE---EEcCEEEeccCCHHHHHH
Confidence 7899999999998888888888888876655322 11111 10 1 2223344 446655543 468999
Q ss_pred HHHHHh
Q psy2059 76 YLAEQY 81 (126)
Q Consensus 76 yL~~~~ 81 (126)
.|++..
T Consensus 99 ll~~~p 104 (149)
T COG3019 99 LLAEKP 104 (149)
T ss_pred HHhCCC
Confidence 999875
No 136
>PF01323 DSBA: DSBA-like thioredoxin domain; InterPro: IPR001853 DSBA is a sub-family of the Thioredoxin family []. The efficient and correct folding of bacterial disulphide bonded proteins in vivo is dependent upon a class of periplasmic oxidoreductase proteins called DsbA, after the Escherichia coli enzyme. The bacterial protein-folding factor DsbA is the most oxidizing of the thioredoxin family. DsbA catalyses disulphide-bond formation during the folding of secreted proteins. The extremely oxidizing nature of DsbA has been proposed to result from either domain motion or stabilising active-site interactions in the reduced form. DsbA's highly oxidizing nature is a result of hydrogen bond, electrostatic and helix-dipole interactions that favour the thiolate over the disulphide at the active site []. In the pathogenic bacterium Vibrio cholerae, the DsbA homologue (TcpG) is responsible for the folding, maturation and secretion of virulence factors. While the overall architecture of TcpG and DsbA is similar and the surface features are retained in TcpG, there are significant differences. For example, the kinked active site helix results from a three-residue loop in DsbA, but is caused by a proline in TcpG (making TcpG more similar to thioredoxin in this respect). Furthermore, the proposed peptide binding groove of TcpG is substantially shortened compared with that of DsbA due to a six-residue deletion. Also, the hydrophobic pocket of TcpG is more shallow and the acidic patch is much less extensive than that of E. coli DsbA [].; GO: 0015035 protein disulfide oxidoreductase activity; PDB: 3GL5_A 3DKS_D 3RPP_C 3RPN_B 1YZX_A 3L9V_C 2IMD_A 2IME_A 2IMF_A 2B3S_B ....
Probab=62.45 E-value=13 Score=24.65 Aligned_cols=35 Identities=17% Similarity=0.231 Sum_probs=26.5
Q ss_pred eEEecCCCCchHHHH----HHHHHHh-CCCceEEEccCCC
Q psy2059 3 IDFYYVPGSAPCRAV----QLAAAQI-GVPLNLKHTDLMK 37 (126)
Q Consensus 3 ~~Ly~~~~s~~~~~v----~~~l~~~-gi~~~~~~v~~~~ 37 (126)
+++|+...||+|... +-+++.. ++.++.+.+.+..
T Consensus 2 i~~~~D~~Cp~cy~~~~~l~~l~~~~~~~~i~~~p~~l~~ 41 (193)
T PF01323_consen 2 IEFFFDFICPWCYLASPRLRKLRAEYPDVEIEWRPFPLRP 41 (193)
T ss_dssp EEEEEBTTBHHHHHHHHHHHHHHHHHTTCEEEEEEESSST
T ss_pred EEEEEeCCCHHHHHHHHHHHHHHHHhcCCcEEEecccccc
Confidence 689999999999843 4555556 8888888887653
No 137
>cd02947 TRX_family TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains. Group I TRX is a small ancient protein that alter the redox state of target proteins via the reversible oxidation of an active site dithiol, present in a CXXC motif, partially exposed at the protein's surface. TRX reduces protein disulfide bonds, resulting in a disulfide bond at its active site. Oxidized TRX is converted to the active form by TRX reductase, using reducing equivalents derived from either NADPH or ferredoxins. By altering their redox state, TRX regulates the functions of at least 30 target proteins, some of which are enzymes and transcription factors. It also plays an important role in the defense against oxidative stress by directly reducing hydrogen peroxide and certain radicals, and by serving as a reductant for peroxiredoxins. At least two major types of functio
Probab=61.69 E-value=26 Score=19.45 Aligned_cols=50 Identities=18% Similarity=0.349 Sum_probs=32.1
Q ss_pred eEEecCCCCchHHHHHHHHHH-----hCCCceEEEccCCCCCCCChhHhhhCCCCccceee
Q psy2059 3 IDFYYVPGSAPCRAVQLAAAQ-----IGVPLNLKHTDLMKGEHLTPEFLKLNPQHTVPYSQ 58 (126)
Q Consensus 3 ~~Ly~~~~s~~~~~v~~~l~~-----~gi~~~~~~v~~~~~~~~~~~~~~~~p~~~vP~L~ 58 (126)
+.+++.+.|+.|....-.++. .++.+ ..++... ..++........+|+++
T Consensus 14 ll~~~~~~C~~C~~~~~~~~~~~~~~~~~~~--~~i~~~~----~~~~~~~~~v~~~P~~~ 68 (93)
T cd02947 14 VVDFWAPWCGPCKAIAPVLEELAEEYPKVKF--VKVDVDE----NPELAEEYGVRSIPTFL 68 (93)
T ss_pred EEEEECCCChhHHHhhHHHHHHHHHCCCceE--EEEECCC----ChhHHHhcCcccccEEE
Confidence 567788899999988777666 44444 4444432 34455555566789873
No 138
>PHA03075 glutaredoxin-like protein; Provisional
Probab=60.94 E-value=18 Score=23.08 Aligned_cols=34 Identities=9% Similarity=0.285 Sum_probs=30.7
Q ss_pred eEEecCCCCchHHHHHHHHHHhCCCceEEEccCC
Q psy2059 3 IDFYYVPGSAPCRAVQLAAAQIGVPLNLKHTDLM 36 (126)
Q Consensus 3 ~~Ly~~~~s~~~~~v~~~l~~~gi~~~~~~v~~~ 36 (126)
+.|+|-|.|+-|+.+.-++++..=+|+...|+..
T Consensus 5 LILfGKP~C~vCe~~s~~l~~ledeY~ilrVNIl 38 (123)
T PHA03075 5 LILFGKPLCSVCESISEALKELEDEYDILRVNIL 38 (123)
T ss_pred EEEeCCcccHHHHHHHHHHHHhhccccEEEEEee
Confidence 8899999999999999999999889998888764
No 139
>cd03025 DsbA_FrnE_like DsbA family, FrnE-like subfamily; composed of uncharacterized proteins containing a CXXC motif with similarity to DsbA and FrnE. FrnE is presumed to be a thiol oxidoreductase involved in polyketide biosynthesis, specifically in the production of the aromatic antibiotics frenolicin and nanaomycins.
Probab=59.88 E-value=25 Score=23.38 Aligned_cols=36 Identities=14% Similarity=0.351 Sum_probs=24.3
Q ss_pred CeeEEecCCCCchHHHH----HHHHHHh--CCCceEEEccCC
Q psy2059 1 MTIDFYYVPGSAPCRAV----QLAAAQI--GVPLNLKHTDLM 36 (126)
Q Consensus 1 M~~~Ly~~~~s~~~~~v----~~~l~~~--gi~~~~~~v~~~ 36 (126)
|.+.+|..+.||+|+.. +-+.++. +++++.+...+.
T Consensus 1 ~~i~~~~D~~cp~c~~~~~~l~~l~~~~~~~~~v~~~~~~L~ 42 (193)
T cd03025 1 LELYYFIDPLCGWCYGFEPLLEKLKEEYGGGIEVELHLGGLL 42 (193)
T ss_pred CeEEEEECCCCchhhCchHHHHHHHHHhCCCceEEEEecccc
Confidence 56889999999999843 3344444 666666655443
No 140
>PF04564 U-box: U-box domain; InterPro: IPR003613 Quality control of intracellular proteins is essential for cellular homeostasis. Molecular chaperones recognise and contribute to the refolding of misfolded or unfolded proteins, whereas the ubiquitin-proteasome system mediates the degradation of such abnormal proteins. Ubiquitin-protein ligases (E3s) determine the substrate specificity for ubiquitylation and have been classified into HECT and RING-finger families. More recently, however, U-box proteins, which contain a domain (the U box) of about 70 amino acids that is conserved from yeast to humans, have been identified as a new type of E3 []. Members of the U-box family of proteins constitute a class of ubiquitin-protein ligases (E3s) distinct from the HECT-type and RING finger-containing E3 families []. Using yeast two-hybrid technology, all mammalian U-box proteins have been reported to interact with molecular chaperones or co-chaperones, including Hsp90, Hsp70, DnaJc7, EKN1, CRN, and VCP. This suggests that the function of U box-type E3s is to mediate the degradation of unfolded or misfolded proteins in conjunction with molecular chaperones as receptors that recognise such abnormal proteins [, ]. Unlike the RING finger domain, IPR001841 from INTERPRO, that is stabilised by Zn2+ ions coordinated by the cysteines and a histidine, the U-box scaffold is probably stabilised by a system of salt-bridges and hydrogen bonds. The charged and polar residues that participate in this network of bonds are more strongly conserved in the U-box proteins than in classic RING fingers, which supports their role in maintaining the stability of the U box. Thus, the U box appears to have evolved from a RING finger domain by appropriation of a new set of residues required to stabilise its structure, concomitant with the loss of the original, metal-chelating residues [].; GO: 0004842 ubiquitin-protein ligase activity, 0016567 protein ubiquitination, 0000151 ubiquitin ligase complex; PDB: 1T1H_A 2C2L_D 2C2V_V 1WGM_A 2KR4_A 3L1Z_B 3L1X_A 2KRE_A 3M63_A 2QIZ_A ....
Probab=59.43 E-value=9.6 Score=21.74 Aligned_cols=46 Identities=20% Similarity=0.244 Sum_probs=31.0
Q ss_pred ccceeeeecCCCeeeechHHHHHHHHHHhCCCC---------CCCCCCHHHHHHHHHHHh
Q psy2059 53 TVPYSQQTNSQEYRREESRAIIAYLAEQYGKDD---------SLYPKDPKARGIVNQRLY 103 (126)
Q Consensus 53 ~vP~L~~~~~~~~~l~eS~aI~~yL~~~~~~~~---------~l~p~~~~~~~~~~~wl~ 103 (126)
+=||+ ..+| ..+|-.+|.+||.+..+..+ .+.| +..-|..+++|..
T Consensus 15 ~dPVi---~~~G-~tyer~~I~~~l~~~~~~~P~t~~~l~~~~l~p-n~~Lk~~I~~~~~ 69 (73)
T PF04564_consen 15 RDPVI---LPSG-HTYERSAIERWLEQNGGTDPFTRQPLSESDLIP-NRALKSAIEEWCA 69 (73)
T ss_dssp SSEEE---ETTS-EEEEHHHHHHHHCTTSSB-TTT-SB-SGGGSEE--HHHHHHHHHHHH
T ss_pred hCcee---CCcC-CEEcHHHHHHHHHcCCCCCCCCCCcCCcccceE-CHHHHHHHHHHHH
Confidence 45898 8888 89999999999998332221 0222 4456778888865
No 141
>COG5515 Uncharacterized conserved small protein [Function unknown]
Probab=58.46 E-value=7.6 Score=21.75 Aligned_cols=23 Identities=26% Similarity=0.443 Sum_probs=17.1
Q ss_pred CeeEEecC----CCCchHHHHHHHHHH
Q psy2059 1 MTIDFYYV----PGSAPCRAVQLAAAQ 23 (126)
Q Consensus 1 M~~~Ly~~----~~s~~~~~v~~~l~~ 23 (126)
|.|+||-+ ..+.+|.||-.+|++
T Consensus 1 ~~mKLYRfiTGpDDssFChrvta~LN~ 27 (70)
T COG5515 1 MKMKLYRFITGPDDSSFCHRVTAALNK 27 (70)
T ss_pred CcceeeEeecCCchHHHHHHHHHHHhC
Confidence 56777764 457799999988875
No 142
>cd08540 SAM_PNT-ERG Sterile alpha motif (SAM)/Pointed domain of ERG transcription factor. SAM Pointed domain of ERG subfamily of ETS transcriptional regulators is a putative protein-protein interaction domain. It may participate in formation of homodimers or heterodimers with ETS-2, Fli-1, ER81, and Pu-1. However, dimeric forms are inactive and SAM Pointed domain is not essential for dimerization, since ER81 and Pu-1 do not have it. In mouse, a regulator of this type binds the ESET histone H3-specific methyltransferase (human homolog is SETDB1), followed by modification of local chromatin structure through histone methylation. ERG regulators are involved in endothelial cell differentiation, bone morphogenesis and neural crest development. The Erg gene is a proto-oncogene. It is a target of chromosomal translocations resulting in fusions with new neighboring genes. Chimeric proteins were found in solid tumors such as myeloid leukemia or Ewing's sarcoma. Members of this subfamily are po
Probab=57.30 E-value=10 Score=22.07 Aligned_cols=22 Identities=27% Similarity=0.356 Sum_probs=16.4
Q ss_pred CCCHHH--HHHHHHHHhhhccccc
Q psy2059 89 PKDPKA--RGIVNQRLYFDIGTLY 110 (126)
Q Consensus 89 p~~~~~--~~~~~~wl~~~~~~~~ 110 (126)
|.||.+ +.+|.+|+.|+..++.
T Consensus 2 P~DP~~Wt~~~V~~WL~Wa~~ef~ 25 (75)
T cd08540 2 PADPTLWSTDHVRQWLEWAVKEYG 25 (75)
T ss_pred CCChhhcCHHHHHHHHHHHHHHhC
Confidence 445543 7899999999887765
No 143
>cd08531 SAM_PNT-ERG_FLI-1 Sterile alpha motif (SAM)/Pointed domain of ERG (Ets related gene) and FLI-1 (Friend leukemia integration 1) transcription factors. SAM Pointed domain of ERG/FLI-1 subfamily of ETS transcriptional regulators is a putative protein-protein interaction domain. The ERG and FLI regulators are involved in endothelial cell differentiation, bone morphogenesis and neural crest development. They are proto-oncogenes implicated in cancer development such as myeloid leukemia, Ewing's sarcoma and erythroleukemia. Members of this subfamily are potential targets for cancer therapy.
Probab=56.61 E-value=11 Score=21.94 Aligned_cols=22 Identities=32% Similarity=0.416 Sum_probs=16.5
Q ss_pred CCCHHH--HHHHHHHHhhhccccc
Q psy2059 89 PKDPKA--RGIVNQRLYFDIGTLY 110 (126)
Q Consensus 89 p~~~~~--~~~~~~wl~~~~~~~~ 110 (126)
|.||.+ +.+|.+|+.|+..++.
T Consensus 2 P~DP~~Wt~~~V~~WL~Wa~~ef~ 25 (75)
T cd08531 2 PADPTLWTREHVRQWLEWAVKEYG 25 (75)
T ss_pred CCChhhcCHHHHHHHHHHHHHHcC
Confidence 445543 7899999999887765
No 144
>cd08533 SAM_PNT-ETS-1,2 Sterile alpha motif (SAM)/Pointed domain of ETS-1,2 family. SAM Pointed domain of ETS-1,2 family of transcriptional activators is a protein-protein interaction domain. It carries a kinase docking site and mediates interaction between ETS transcriptional activators and protein kinases. This group of transcriptional factors is involved in the Ras/MAP kinase signaling pathway. MAP kinases phosphorylate the transcription factors. Phosphorylated factors then recruit coactivators and enhance transactivation. Members of this group play a role in regulation of different embryonic developmental processes. ETS-1,2 transcriptional activators are proto-oncogenes involved in malignant transformation and tumor progression. They are potential molecular targets for selective cancer therapy.
Probab=54.99 E-value=12 Score=21.58 Aligned_cols=16 Identities=19% Similarity=0.266 Sum_probs=13.5
Q ss_pred HHHHHHHHhhhccccc
Q psy2059 95 RGIVNQRLYFDIGTLY 110 (126)
Q Consensus 95 ~~~~~~wl~~~~~~~~ 110 (126)
+.+|.+|+.|+..++.
T Consensus 9 ~~~V~~WL~Wa~~ef~ 24 (71)
T cd08533 9 ETHVRQWLLWAVNEFS 24 (71)
T ss_pred HHHHHHHHHHHHHHcC
Confidence 7889999999887664
No 145
>cd02989 Phd_like_TxnDC9 Phosducin (Phd)-like family, Thioredoxin (TRX) domain containing protein 9 (TxnDC9) subfamily; composed of predominantly uncharacterized eukaryotic proteins, containing a TRX-like domain without the redox active CXXC motif. The gene name for the human protein is TxnDC9. The two characterized members are described as Phd-like proteins, PLP1 of Saccharomyces cerevisiae and PhLP3 of Dictyostelium discoideum. Gene disruption experiments show that both PLP1 and PhLP3 are non-essential proteins. Unlike Phd and most Phd-like proteins, members of this group do not contain the Phd N-terminal helical domain which is implicated in binding to the G protein betagamma subunit.
Probab=53.34 E-value=51 Score=20.26 Aligned_cols=62 Identities=8% Similarity=0.128 Sum_probs=38.6
Q ss_pred eEEecCCCCchHHHHHHHHHHhC---CCceEEEccCCCCCCCChhHhhhCCCCccceeeeec-CCCeeeech
Q psy2059 3 IDFYYVPGSAPCRAVQLAAAQIG---VPLNLKHTDLMKGEHLTPEFLKLNPQHTVPYSQQTN-SQEYRREES 70 (126)
Q Consensus 3 ~~Ly~~~~s~~~~~v~~~l~~~g---i~~~~~~v~~~~~~~~~~~~~~~~p~~~vP~L~~~~-~~~~~l~eS 70 (126)
+..|+.+.|+.|+.+.-.+++.- -.+....+|.. ..++..+...-..+|++. . .+|..+...
T Consensus 26 vV~f~a~~c~~C~~~~p~l~~la~~~~~i~f~~Vd~~----~~~~l~~~~~v~~vPt~l--~fk~G~~v~~~ 91 (113)
T cd02989 26 VCHFYHPEFFRCKIMDKHLEILAKKHLETKFIKVNAE----KAPFLVEKLNIKVLPTVI--LFKNGKTVDRI 91 (113)
T ss_pred EEEEECCCCccHHHHHHHHHHHHHHcCCCEEEEEEcc----cCHHHHHHCCCccCCEEE--EEECCEEEEEE
Confidence 44677888999997765554421 12456667665 344555666677899883 2 367666543
No 146
>cd08542 SAM_PNT-ETS-1 Sterile alpha motif (SAM)/Pointed domain of ETS-1. SAM Pointed domain of ETS-1 subfamily of ETS transcriptional activators is a protein-protein interaction domain. The ETS-1 activator is regulated by phosphorylation. It contains a docking site for the ERK2 MAP (Mitogen Activated Protein) kinase, while the ERK2 phosphorylation site is located in the N-terminal disordered region upstream of the SAM Pointed domain. Mutations of the kinase docking site residues inhibit phosphorylation. ETS-1 activators play role in a number of different physiological processes, and they are expressed during embryonic development, including blood vessel formation, hematopoietic, lymphoid, neuronal and osteogenic differentiation. The Ets-1 gene is a proto-oncogene involved in progression of different tumors (including breast cancer, meningioma, and prostate cancer). Members of this subfamily are potential molecular targets for selective cancer therapy.
Probab=51.82 E-value=15 Score=22.11 Aligned_cols=24 Identities=21% Similarity=0.404 Sum_probs=18.9
Q ss_pred CCCCCHHH--HHHHHHHHhhhccccc
Q psy2059 87 LYPKDPKA--RGIVNQRLYFDIGTLY 110 (126)
Q Consensus 87 l~p~~~~~--~~~~~~wl~~~~~~~~ 110 (126)
-.|.||.+ +.+|.+|+.|+...+.
T Consensus 14 ~Ip~DP~~Wt~~~V~~WL~Wa~~ef~ 39 (88)
T cd08542 14 GIPKDPRQWTETHVRDWVMWAVNEFS 39 (88)
T ss_pred CCCCChhhCCHHHHHHHHHHHHHHcC
Confidence 46677765 7899999999887764
No 147
>cd02978 KaiB_like KaiB-like family; composed of the circadian clock proteins, KaiB and the N-terminal KaiB-like sensory domain of SasA. KaiB is an essential protein in maintaining circadian rhythm. It was originally discovered from the cyanobacterium Synechococcus as part of the circadian clock gene cluster, kaiABC. KaiB attenuates KaiA-enhanced KaiC autokinase activity by interacting with KaiA-KaiC complexes in a circadian fashion. KaiB is membrane-associated as well as cytosolic. The amount of membrane-associated protein peaks in the evening (at circadian time (CT) 12-16) while the cytosolic form peaks later (at CT 20). The rhythmic localization of KaiB may function in regulating the formation of Kai complexes. SasA is a sensory histidine kinase which associates with KaiC. Although it is not an essential oscillator component, it is important in enhancing kaiABC expression and is important in metabolic growth control under day/night cycle conditions. SasA contains an N-terminal sensor
Probab=51.51 E-value=46 Score=19.21 Aligned_cols=51 Identities=16% Similarity=0.338 Sum_probs=33.5
Q ss_pred eEEecCCCCchHHHH----H-HHHHHhCCCceEEEccCCCCCCCChhHhhhCCCCcccee
Q psy2059 3 IDFYYVPGSAPCRAV----Q-LAAAQIGVPLNLKHTDLMKGEHLTPEFLKLNPQHTVPYS 57 (126)
Q Consensus 3 ~~Ly~~~~s~~~~~v----~-~~l~~~gi~~~~~~v~~~~~~~~~~~~~~~~p~~~vP~L 57 (126)
+.||-...++.+.++ + ++=++.+-+|+...+|... .|+.......--.|+|
T Consensus 4 L~Lyv~g~tp~S~~ai~nl~~i~e~~l~~~~~LeVIDv~~----~P~lAe~~~ivAtPtL 59 (72)
T cd02978 4 LRLYVAGRTPKSERALQNLKRILEELLGGPYELEVIDVLK----QPQLAEEDKIVATPTL 59 (72)
T ss_pred EEEEECCCCchHHHHHHHHHHHHHHhcCCcEEEEEEEccc----CHhHHhhCCEEEechh
Confidence 578888887777754 2 3334457799999999874 4554444444456776
No 148
>KOG3425|consensus
Probab=51.20 E-value=64 Score=20.77 Aligned_cols=69 Identities=19% Similarity=0.185 Sum_probs=42.3
Q ss_pred CCCchHHHH----HHHHHHhCCCceEEEccCCCCCCCC-h--hHhhhCCC--Cccceeeeec-C-CCeeeechHHHHHHH
Q psy2059 9 PGSAPCRAV----QLAAAQIGVPLNLKHTDLMKGEHLT-P--EFLKLNPQ--HTVPYSQQTN-S-QEYRREESRAIIAYL 77 (126)
Q Consensus 9 ~~s~~~~~v----~~~l~~~gi~~~~~~v~~~~~~~~~-~--~~~~~~p~--~~vP~L~~~~-~-~~~~l~eS~aI~~yL 77 (126)
..||.|.++ .-+|++...+...+.++....+... + .|+ .+|. --||+|. . . .+..+.+..+-..+|
T Consensus 43 SWCPdCV~AEPvi~~alk~ap~~~~~v~v~VG~rp~Wk~p~n~FR-~d~~~lt~vPTLl--rw~~~~~rL~~~q~~~~~L 119 (128)
T KOG3425|consen 43 SWCPDCVAAEPVINEALKHAPEDVHFVHVYVGNRPYWKDPANPFR-KDPGILTAVPTLL--RWKRQPQRLDGLQCLNDHL 119 (128)
T ss_pred cCCchHHHhhHHHHHHHHhCCCceEEEEEEecCCCcccCCCCccc-cCCCceeecceee--EEcCccccchHhHhhHHHH
Confidence 468888754 5677788888888888886543322 1 222 2222 3489883 2 2 456677777766666
Q ss_pred HHH
Q psy2059 78 AEQ 80 (126)
Q Consensus 78 ~~~ 80 (126)
.+.
T Consensus 120 ve~ 122 (128)
T KOG3425|consen 120 VEM 122 (128)
T ss_pred HHH
Confidence 653
No 149
>TIGR01295 PedC_BrcD bacteriocin transport accessory protein, putative. This model describes a small family of proteins believed to aid in the export of various class II bacteriocins, which are ribosomally-synthesized, non-lantibiotic bacterial peptide antibiotics. Members of this family are found in operons for pediocin PA-1 from Pediococcus acidilactici and brochocin-C from Brochothrix campestris.
Probab=50.04 E-value=62 Score=20.28 Aligned_cols=32 Identities=19% Similarity=0.186 Sum_probs=20.5
Q ss_pred eEEecCCCCchHHHHHH----HHHHhCCCceEEEcc
Q psy2059 3 IDFYYVPGSAPCRAVQL----AAAQIGVPLNLKHTD 34 (126)
Q Consensus 3 ~~Ly~~~~s~~~~~v~~----~l~~~gi~~~~~~v~ 34 (126)
+..++.+.||+|+.+.= +.++.++++-.+.++
T Consensus 27 iv~f~~~~Cp~C~~~~P~l~~~~~~~~~~~y~vdvd 62 (122)
T TIGR01295 27 TFFIGRKTCPYCRKFSGTLSGVVAQTKAPIYYIDSE 62 (122)
T ss_pred EEEEECCCChhHHHHhHHHHHHHHhcCCcEEEEECC
Confidence 45678899999997543 344444555555554
No 150
>PF11823 DUF3343: Protein of unknown function (DUF3343); InterPro: IPR021778 This family of proteins are functionally uncharacterised. This protein is found in bacteria and archaea. Proteins in this family are typically between 78 to 102 amino acids in length.
Probab=49.48 E-value=29 Score=19.63 Aligned_cols=33 Identities=18% Similarity=0.255 Sum_probs=25.9
Q ss_pred CeeEEecCCCCchHHHHHHHHHHhCCCceEEEc
Q psy2059 1 MTIDFYYVPGSAPCRAVQLAAAQIGVPLNLKHT 33 (126)
Q Consensus 1 M~~~Ly~~~~s~~~~~v~~~l~~~gi~~~~~~v 33 (126)
|..-+..++....+.++.-+|+..|++++..++
T Consensus 1 m~~~~i~F~st~~a~~~ek~lk~~gi~~~liP~ 33 (73)
T PF11823_consen 1 MKYYLITFPSTHDAMKAEKLLKKNGIPVRLIPT 33 (73)
T ss_pred CceEEEEECCHHHHHHHHHHHHHCCCcEEEeCC
Confidence 444556667777889999999999999987665
No 151
>PF06934 CTI: Fatty acid cis/trans isomerase (CTI); InterPro: IPR010706 This family consists of several fatty acid cis/trans isomerase proteins, which appear to be found exclusively in bacteria of the orders Vibrionales and Pseudomonadales. Cis/trans isomerase (CTI) catalyses the cis-trans isomerisation of esterified fatty acids in phospholipids, mainly cis-oleic acid (C(16:1,9)) and cis-vaccenic acid (C(18:1,11)), in response to solvents. The CTI protein has been shown to be involved in solvent resistance in Pseudomonas putida [].
Probab=48.20 E-value=1.1e+02 Score=25.63 Aligned_cols=76 Identities=20% Similarity=0.291 Sum_probs=51.3
Q ss_pred hhHhhhCCCCccceeeeecCCCeeeechHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHhhhccccc--hhhHHHHHHH
Q psy2059 43 PEFLKLNPQHTVPYSQQTNSQEYRREESRAIIAYLAEQYGKDDSLYPKDPKARGIVNQRLYFDIGTLY--QRFADYFVST 120 (126)
Q Consensus 43 ~~~~~~~p~~~vP~L~~~~~~~~~l~eS~aI~~yL~~~~~~~~~l~p~~~~~~~~~~~wl~~~~~~~~--~~~~~~~~~~ 120 (126)
+.|.+.+|..-+|.= -.|..=.|=..+.+||++-.+.+. --|.++.+.++|.+|..|.|..=. .-++.++|.+
T Consensus 81 ~~y~~~~P~~GMPyg----~p~Ls~~E~~~L~~WL~~GA~~~~-~~~~~~~~~~~I~~wE~fLN~~~~K~qL~aRYiYEH 155 (694)
T PF06934_consen 81 DAYAQDHPHWGMPYG----LPGLSDEEYATLMRWLEQGAPMPD-QPPLSAAEQAQIARWEAFLNGDDLKSQLVARYIYEH 155 (694)
T ss_pred HHHHHhCCCCCCCcC----CCCCCHHHHHHHHHHHHcCCcCCC-CCCcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH
Confidence 455688887776642 233344566779999997544333 335678899999999999887543 3357777777
Q ss_pred HHH
Q psy2059 121 LFI 123 (126)
Q Consensus 121 ~~~ 123 (126)
+|-
T Consensus 156 LFL 158 (694)
T PF06934_consen 156 LFL 158 (694)
T ss_pred HHH
Confidence 664
No 152
>cd08541 SAM_PNT-FLI-1 Sterile alpha motif (SAM)/Pointed domain of friend leukemia integration 1 transcription activator. SAM Pointed domain of FLI-1 (Friend Leukemia Integration) subfamily of ETS transcriptional regulators is a putative protein-protein interaction domain. The FLI-1 protein participates in regulation of cellular differentiation, proliferation, and survival. The Fli-1 gene was initially described in Friend virus-induced erythroleukemias as a site for virus integration. It is highly expressed in hematopoietic tissues and at lower level in lungs, heart, and ovaries. Fli-1 is a proto-oncogene implicated in Ewing's sarcoma and erythroleukemia. Members of this subfamily are potential targets for cancer therapy.
Probab=47.93 E-value=19 Score=21.87 Aligned_cols=24 Identities=29% Similarity=0.374 Sum_probs=18.8
Q ss_pred CCCCCHHH--HHHHHHHHhhhccccc
Q psy2059 87 LYPKDPKA--RGIVNQRLYFDIGTLY 110 (126)
Q Consensus 87 l~p~~~~~--~~~~~~wl~~~~~~~~ 110 (126)
..|.||.+ +.+|.+|+.|+..++.
T Consensus 12 ~IP~DP~~Wt~~hV~~WL~Wa~~ef~ 37 (91)
T cd08541 12 IVPADPTLWTQEHVRQWLEWAIKEYG 37 (91)
T ss_pred eCCCChhhcCHHHHHHHHHHHHHHcC
Confidence 46677765 7899999999887765
No 153
>TIGR02681 phage_pRha phage regulatory protein, rha family. Members of this protein family are found in temperate phage and bacterial prophage regions. Members include the product of the rha gene of the lambdoid phage phi-80, a late operon gene. The presence of this gene interferes with infection of bacterial strains that lack integration host factor (IHF), which regulates the rha gene. It is suggested that pRha is a phage regulatory protein.
Probab=46.99 E-value=19 Score=22.40 Aligned_cols=27 Identities=7% Similarity=0.087 Sum_probs=21.1
Q ss_pred cceeeeecCCCeeeechHHHHHHHHHHhC
Q psy2059 54 VPYSQQTNSQEYRREESRAIIAYLAEQYG 82 (126)
Q Consensus 54 vP~L~~~~~~~~~l~eS~aI~~yL~~~~~ 82 (126)
+|.+. ..+|.+++.|..|+++...++.
T Consensus 2 ~~~v~--~~~~~~~ttS~~IAe~fgK~H~ 28 (108)
T TIGR02681 2 FPKVF--TKRNQVVTDSLTMAQMFGKRHD 28 (108)
T ss_pred CceEE--EECCEEEEeHHHHHHHHCcchH
Confidence 35552 5699999999999999887654
No 154
>PF15608 PELOTA_1: PELOTA RNA binding domain
Probab=46.80 E-value=49 Score=20.43 Aligned_cols=29 Identities=21% Similarity=0.256 Sum_probs=22.3
Q ss_pred EEecCCCCchHHHHHHHHHHhCCCceEEE
Q psy2059 4 DFYYVPGSAPCRAVQLAAAQIGVPLNLKH 32 (126)
Q Consensus 4 ~Ly~~~~s~~~~~v~~~l~~~gi~~~~~~ 32 (126)
.|-..+..|...-++.+++++|+|++...
T Consensus 59 vLVr~~~~pd~~Hl~~LA~ekgVpVe~~~ 87 (100)
T PF15608_consen 59 VLVRDPDDPDLAHLLLLAEEKGVPVEVYP 87 (100)
T ss_pred EEECCCCCccHHHHHHHHHHcCCcEEEeC
Confidence 34455667888888999999999998643
No 155
>cd08534 SAM_PNT-GABP-alpha Sterile alpha motif (SAM)/Pointed domain of GA-binding protein alpha chain. SAM Pointed domain of GABP-alpha subfamily of ETS transcriptional regulators is a putative protein-protein interaction domain. This type of transcriptional regulators forms heterotetramers containing two alpha and two beta subunits. It interacts with GA repeats (purine rich repeats). GABP transcriptional factors control gene expression in cell cycle control, apoptosis, and cellular respiration. GABP participates in regulation of transmembrane receptors and key hormones especially in myeloid cells and at the neuromuscular junction.
Probab=46.10 E-value=22 Score=21.47 Aligned_cols=24 Identities=17% Similarity=0.254 Sum_probs=19.1
Q ss_pred CCCCCHHH--HHHHHHHHhhhccccc
Q psy2059 87 LYPKDPKA--RGIVNQRLYFDIGTLY 110 (126)
Q Consensus 87 l~p~~~~~--~~~~~~wl~~~~~~~~ 110 (126)
-.|.||.+ +.+|.+|+.|+..++.
T Consensus 14 ~IP~DP~~Wt~~~V~~WL~Wa~~ef~ 39 (89)
T cd08534 14 KIPYDPMEWTEDQVLHWVVWAVKEFS 39 (89)
T ss_pred CCCCChHHcCHHHHHHHHHHHHHHcC
Confidence 46677765 7899999999887765
No 156
>KOG2501|consensus
Probab=45.44 E-value=45 Score=22.34 Aligned_cols=67 Identities=15% Similarity=0.238 Sum_probs=38.9
Q ss_pred EEecC-CCCchHH-------HHHHHHHHhCCCceEEEccCCCCCCCChhHhhhC-------CC--------------Ccc
Q psy2059 4 DFYYV-PGSAPCR-------AVQLAAAQIGVPLNLKHTDLMKGEHLTPEFLKLN-------PQ--------------HTV 54 (126)
Q Consensus 4 ~Ly~~-~~s~~~~-------~v~~~l~~~gi~~~~~~v~~~~~~~~~~~~~~~~-------p~--------------~~v 54 (126)
.||++ ..||.|+ ++.-.+...+-+++.+.|+-.+.+..-.+|...+ |+ ..+
T Consensus 37 ~lyFsA~wC~pCR~FTP~Lk~fYe~l~~~~~~fEVvfVS~D~~~~~~~~y~~~~~~~W~~iPf~d~~~~~l~~ky~v~~i 116 (157)
T KOG2501|consen 37 GLYFSAHWCPPCRDFTPILKDFYEELKDNAAPFEVVFVSSDRDEESLDEYMLEHHGDWLAIPFGDDLIQKLSEKYEVKGI 116 (157)
T ss_pred EEEEEEEECCchhhCCchHHHHHHHHHhcCCceEEEEEecCCCHHHHHHHHHhcCCCeEEecCCCHHHHHHHHhcccCcC
Confidence 34443 3466666 3445566667789999998876554445555432 22 347
Q ss_pred ceeeeecCCCeeeech
Q psy2059 55 PYSQQTNSQEYRREES 70 (126)
Q Consensus 55 P~L~~~~~~~~~l~eS 70 (126)
|+|+.-..+|.+|++-
T Consensus 117 P~l~i~~~dG~~v~~d 132 (157)
T KOG2501|consen 117 PALVILKPDGTVVTED 132 (157)
T ss_pred ceeEEecCCCCEehHh
Confidence 8774223577666653
No 157
>COG2761 FrnE Predicted dithiol-disulfide isomerase involved in polyketide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=45.20 E-value=76 Score=22.62 Aligned_cols=26 Identities=19% Similarity=0.165 Sum_probs=17.9
Q ss_pred eEEecCCCCchHH----HHHHHHHHhCCCc
Q psy2059 3 IDFYYVPGSAPCR----AVQLAAAQIGVPL 28 (126)
Q Consensus 3 ~~Ly~~~~s~~~~----~v~~~l~~~gi~~ 28 (126)
+.+|....||+|+ +..-++.+.+-.+
T Consensus 8 I~v~sD~vCPwC~ig~~rL~ka~~~~~~~~ 37 (225)
T COG2761 8 IDVFSDVVCPWCYIGKRRLEKALAEYPQEV 37 (225)
T ss_pred EEEEeCCcCchhhcCHHHHHHHHHhcCcce
Confidence 7889999999998 3344555555333
No 158
>PF09314 DUF1972: Domain of unknown function (DUF1972); InterPro: IPR015393 This domain is functionally uncharacterised and found in bacterial glycosyltransferases and rhamnosyltransferases.
Probab=44.95 E-value=20 Score=24.58 Aligned_cols=21 Identities=29% Similarity=0.537 Sum_probs=18.8
Q ss_pred CCCeeeechHHHHHHHHHHhC
Q psy2059 62 SQEYRREESRAIIAYLAEQYG 82 (126)
Q Consensus 62 ~~~~~l~eS~aI~~yL~~~~~ 82 (126)
-.+..|++|..|-+|+.++|+
T Consensus 153 ~ad~lIaDs~~I~~y~~~~y~ 173 (185)
T PF09314_consen 153 YADRLIADSKGIQDYIKERYG 173 (185)
T ss_pred hCCEEEEcCHHHHHHHHHHcC
Confidence 456779999999999999998
No 159
>cd03021 DsbA_GSTK DsbA family, Glutathione (GSH) S-transferase Kappa (GSTK) subfamily; GSTK is a member of the GST family of enzymes which catalyzes the transfer of the thiol of GSH to electrophilic substrates. It is specifically located in the mitochondria and peroxisomes, unlike other members of the canonical GST family, which are mainly cytosolic. The biological substrates of GSTK are not yet known. It is presumed to have a protective role during respiration when large amounts of reactive oxygen species are generated. GSTK has the same general fold as DsbA, consisting of a thioredoxin domain interrupted by an alpha-helical domain and its biological unit is a homodimer. GSTK is closely related to the bacterial enzyme, 2-hydroxychromene-2-carboxylate (HCCA) isomerase. It shows little sequence similarity to the other members of the GST family.
Probab=44.74 E-value=35 Score=23.38 Aligned_cols=33 Identities=18% Similarity=0.079 Sum_probs=24.2
Q ss_pred eEEecCCCCchHHHH----HHHHHHhCCCceEEEccC
Q psy2059 3 IDFYYVPGSAPCRAV----QLAAAQIGVPLNLKHTDL 35 (126)
Q Consensus 3 ~~Ly~~~~s~~~~~v----~~~l~~~gi~~~~~~v~~ 35 (126)
+.+|....||+|.-. +-++...+++++.+.+.+
T Consensus 3 Id~~~D~vcPwcylg~~~l~~~~~~~~v~i~~~P~~L 39 (209)
T cd03021 3 IELYYDVVSPYSYLAFEVLCRYQTAWNVDITYVPVFL 39 (209)
T ss_pred eEEEEeCCChHHHHHHHHHHHHHHHhCCeEEEEeeeh
Confidence 679999999999843 445556777777777654
No 160
>PRK10877 protein disulfide isomerase II DsbC; Provisional
Probab=44.66 E-value=76 Score=22.42 Aligned_cols=33 Identities=6% Similarity=0.160 Sum_probs=22.1
Q ss_pred eEEecCCCCchHHHHHHHHHHh-CCCceEEEccC
Q psy2059 3 IDFYYVPGSAPCRAVQLAAAQI-GVPLNLKHTDL 35 (126)
Q Consensus 3 ~~Ly~~~~s~~~~~v~~~l~~~-gi~~~~~~v~~ 35 (126)
+.+|..+.||||++..--+... ...++.+.+.+
T Consensus 111 I~vFtDp~CpyCkkl~~~l~~~~~~~v~v~~~~~ 144 (232)
T PRK10877 111 ITVFTDITCGYCHKLHEQMKDYNALGITVRYLAF 144 (232)
T ss_pred EEEEECCCChHHHHHHHHHHHHhcCCeEEEEEec
Confidence 5688999999999987666553 23344444433
No 161
>cd02972 DsbA_family DsbA family; consists of DsbA and DsbA-like proteins, including DsbC, DsbG, glutathione (GSH) S-transferase kappa (GSTK), 2-hydroxychromene-2-carboxylate (HCCA) isomerase, an oxidoreductase (FrnE) presumed to be involved in frenolicin biosynthesis, a 27-kDa outer membrane protein, and similar proteins. Members of this family contain a redox active CXXC motif (except GSTK and HCCA isomerase) imbedded in a TRX fold, and an alpha helical insert of about 75 residues (shorter in DsbC and DsbG) relative to TRX. DsbA is involved in the oxidative protein folding pathway in prokaryotes, catalyzing disulfide bond formation of proteins secreted into the bacterial periplasm. DsbC and DsbG function as protein disulfide isomerases and chaperones to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins.
Probab=43.44 E-value=37 Score=19.15 Aligned_cols=22 Identities=14% Similarity=0.245 Sum_probs=16.9
Q ss_pred eEEecCCCCchHHHHHHHHHHh
Q psy2059 3 IDFYYVPGSAPCRAVQLAAAQI 24 (126)
Q Consensus 3 ~~Ly~~~~s~~~~~v~~~l~~~ 24 (126)
+.+|..+.||+|+...-.+...
T Consensus 1 i~~f~d~~Cp~C~~~~~~l~~~ 22 (98)
T cd02972 1 IVEFFDPLCPYCYLFEPELEKL 22 (98)
T ss_pred CeEEECCCCHhHHhhhHHHHHH
Confidence 4678899999999876666553
No 162
>cd03022 DsbA_HCCA_Iso DsbA family, 2-hydroxychromene-2-carboxylate (HCCA) isomerase subfamily; HCCA isomerase is a glutathione (GSH) dependent enzyme involved in the naphthalene catabolic pathway. It converts HCCA, a hemiketal formed spontaneously after ring cleavage of 1,2-dihydroxynapthalene by a dioxygenase, into cis-o-hydroxybenzylidenepyruvate (cHBPA). This is the fourth reaction in a six-step pathway that converts napthalene into salicylate. HCCA isomerase is unique to bacteria that degrade polycyclic aromatic compounds. It is closely related to the eukaryotic protein, GSH transferase kappa (GSTK).
Probab=43.25 E-value=40 Score=22.34 Aligned_cols=32 Identities=25% Similarity=0.275 Sum_probs=21.8
Q ss_pred eEEecCCCCchHHHH----HHHHHHhCCCceEEEcc
Q psy2059 3 IDFYYVPGSAPCRAV----QLAAAQIGVPLNLKHTD 34 (126)
Q Consensus 3 ~~Ly~~~~s~~~~~v----~~~l~~~gi~~~~~~v~ 34 (126)
+++|....||+|+.. +-+..+.++.++.+.+.
T Consensus 1 i~~~~D~~cP~cy~~~~~l~~~~~~~~~~i~~~p~~ 36 (192)
T cd03022 1 IDFYFDFSSPYSYLAHERLPALAARHGATVRYRPIL 36 (192)
T ss_pred CeEEEeCCChHHHHHHHHHHHHHHHhCCeeEEeeee
Confidence 468899999999854 34444556666666553
No 163
>cd04911 ACT_AKiii-YclM-BS_1 ACT domains located C-terminal to the catalytic domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII. This CD includes the first of two ACT domains located C-terminal to the catalytic domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in Bacilli (Bacillus subtilis (BS) YclM) and Clostridia species. Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. Bacillus subtilis YclM is reported to be a single polypeptide of 50 kD. AKIII from Bacillus subtilis strain 168 is induced by lysine and repressed by threonine and it is synergistically inhibited by lysine and threonine. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=43.06 E-value=31 Score=20.15 Aligned_cols=24 Identities=8% Similarity=-0.004 Sum_probs=19.9
Q ss_pred CCchHHHHHHHHHHhCCCceEEEc
Q psy2059 10 GSAPCRAVQLAAAQIGVPLNLKHT 33 (126)
Q Consensus 10 ~s~~~~~v~~~l~~~gi~~~~~~v 33 (126)
--++++|+.-+++..|++|+..+-
T Consensus 14 evGF~rk~L~I~E~~~is~Eh~PS 37 (76)
T cd04911 14 EVGFGRKLLSILEDNGISYEHMPS 37 (76)
T ss_pred hhcHHHHHHHHHHHcCCCEeeecC
Confidence 356899999999999999986543
No 164
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=42.79 E-value=39 Score=23.05 Aligned_cols=29 Identities=28% Similarity=0.398 Sum_probs=25.8
Q ss_pred CeeEEecCCCCchHHHHHHHHHHhCCCce
Q psy2059 1 MTIDFYYVPGSAPCRAVQLAAAQIGVPLN 29 (126)
Q Consensus 1 M~~~Ly~~~~s~~~~~v~~~l~~~gi~~~ 29 (126)
|-+++-|.|+|+.+-..+.++++.|+++-
T Consensus 1 m~ItIsG~pGsG~TTva~~lAe~~gl~~v 29 (179)
T COG1102 1 MVITISGLPGSGKTTVARELAEHLGLKLV 29 (179)
T ss_pred CEEEeccCCCCChhHHHHHHHHHhCCcee
Confidence 55788899999999999999999999874
No 165
>PF00085 Thioredoxin: Thioredoxin; InterPro: IPR013766 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms. Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of two cysteine thiol groups to a disulphide, accompanied by the transfer of two electrons and two protons. The net result is the covalent interconversion of a disulphide and a dithiol. In the NADPH-dependent protein disulphide reduction, thioredoxin reductase (TR) catalyses the reduction of oxidised thioredoxin (trx) by NADPH using FAD and its redox-active disulphide; reduced thioredoxin then directly reduces the disulphide in the substrate protein []. Thioredoxin is present in prokaryotes and eukaryotes and the sequence around the redox-active disulphide bond is well conserved. All thioredoxins contain a cis-proline located in a loop preceding beta-strand 4, which makes contact with the active site cysteines, and is important for stability and function []. Thioredoxin belongs to a structural family that includes glutaredoxin, glutathione peroxidase, bacterial protein disulphide isomerase DsbA, and the N-terminal domain of glutathione transferase []. Thioredoxins have a beta-alpha unit preceding the motif common to all these proteins. A number of eukaryotic proteins contain domains evolutionary related to thioredoxin, most of them are protein disulphide isomerases (PDI). PDI (5.3.4.1 from EC) [, , ] is an endoplasmic reticulum multi-functional enzyme that catalyses the formation and rearrangement of disulphide bonds during protein folding []. All PDI contains two or three (ERp72) copies of the thioredoxin domain, each of which contributes to disulphide isomerase activity, but which are functionally non-equivalent []. Moreover, PDI exhibits chaperone-like activity towards proteins that contain no disulphide bonds, i.e. behaving independently of its disulphide isomerase activity []. The various forms of PDI which are currently known are: PDI major isozyme; a multifunctional protein that also function as the beta subunit of prolyl 4-hydroxylase (1.14.11.2 from EC), as a component of oligosaccharyl transferase (2.4.1.119 from EC), as thyroxine deiodinase (3.8.1.4 from EC), as glutathione-insulin transhydrogenase (1.8.4.2 from EC) and as a thyroid hormone-binding protein ERp60 (ER-60; 58 Kd microsomal protein). ERp60 was originally thought to be a phosphoinositide-specific phospholipase C isozyme and later to be a protease. ERp72. ERp5. Bacterial proteins that act as thiol:disulphide interchange proteins that allows disulphide bond formation in some periplasmic proteins also contain a thioredoxin domain. These proteins include: Escherichia coli DsbA (or PrfA) and its orthologs in Vibrio cholerae (TtcpG) and Haemophilus influenzae (Por). E. coli DsbC (or XpRA) and its orthologues in Erwinia chrysanthemi and H. influenzae. E. coli DsbD (or DipZ) and its H. influenzae orthologue. E. coli DsbE (or CcmG) and orthologues in H. influenzae. Rhodobacter capsulatus (Rhodopseudomonas capsulata) (HelX), Rhiziobiacae (CycY and TlpA). This entry represents the thioredoxin domain.; GO: 0045454 cell redox homeostasis; PDB: 3ED3_B 1EP7_A 1EP8_B 1TOF_A 2OE3_B 2OE1_B 2OE0_B 1V98_A 3H79_A 3CXG_A ....
Probab=42.43 E-value=67 Score=18.47 Aligned_cols=52 Identities=19% Similarity=0.323 Sum_probs=35.0
Q ss_pred eEEecCCCCchHHHHHHHHH----HhCCCceEEEccCCCCCCCChhHhhhCCCCccceee
Q psy2059 3 IDFYYVPGSAPCRAVQLAAA----QIGVPLNLKHTDLMKGEHLTPEFLKLNPQHTVPYSQ 58 (126)
Q Consensus 3 ~~Ly~~~~s~~~~~v~~~l~----~~gi~~~~~~v~~~~~~~~~~~~~~~~p~~~vP~L~ 58 (126)
+..++.+.|+.|....-.++ ..+-++....+|.. ..+++.+..-...+|+++
T Consensus 21 vv~f~~~~C~~C~~~~~~~~~~~~~~~~~v~~~~vd~~----~~~~l~~~~~v~~~Pt~~ 76 (103)
T PF00085_consen 21 VVYFYAPWCPPCKAFKPILEKLAKEYKDNVKFAKVDCD----ENKELCKKYGVKSVPTII 76 (103)
T ss_dssp EEEEESTTSHHHHHHHHHHHHHHHHTTTTSEEEEEETT----TSHHHHHHTTCSSSSEEE
T ss_pred EEEEeCCCCCccccccceecccccccccccccchhhhh----ccchhhhccCCCCCCEEE
Confidence 55778889999997763332 22226777777765 346666666678899884
No 166
>cd08532 SAM_PNT-PDEF-like Sterile alpha motif (SAM)/Pointed domain of prostate-derived ETS factor. SAM Pointed domain of PDEF-like (Prostate-Derived ETS Factor) subfamily of ETS transcriptional regulators is a putative protein-protein interaction domain. In human males this activator is highly expressed in the prostate gland and enhances androgen-mediated activation of the PSA promoter though interaction with the DNA binding domain of androgen receptor. PDEF may play a role in prostate cancer development as well as in goblet cell formation and mucus production in the epithelial lining of respiratory and intestinal tracts.
Probab=42.38 E-value=25 Score=20.53 Aligned_cols=23 Identities=17% Similarity=0.170 Sum_probs=17.1
Q ss_pred CCCCHHH--HHHHHHHHhhhccccc
Q psy2059 88 YPKDPKA--RGIVNQRLYFDIGTLY 110 (126)
Q Consensus 88 ~p~~~~~--~~~~~~wl~~~~~~~~ 110 (126)
.|.||.+ +.+|.+|+.|+...+.
T Consensus 6 ip~DP~~Ws~~~V~~WL~w~~~ef~ 30 (76)
T cd08532 6 ISPDPYQWSPANVQKWLLWTEHQYR 30 (76)
T ss_pred CCCChhhcCHHHHHHHHHHHHHHhC
Confidence 3456654 7899999999877664
No 167
>cd08543 SAM_PNT-ETS-2 Sterile alpha motif (SAM)/Pointed domain of ETS-2. SAM Pointed domain of ETS-2 subfamily of ETS transcriptional regulators is a protein-protein interaction domain. It contains a docking site for Cdk10 (cyclin-dependent kinase 10), a member of the Cdc2 kinase family. The interaction between ETS-2 and Cdk10 kinase inhibits ETS-2 transactivation activity in mammals. ETS-2 is also regulated by ERK2 MAP kinase. ETS-2, which is phosphorylated by ERK2, can interact with coactivators and enhance transactivation. ETS-2 transcriptional activators are involved in embryonic development and cell cycle control. The Ets-2 gene is a proto-oncogene. It is overexpressed in breast and prostate cancer cells and its overexpression is necessary for transformation of such cells. Members of ETS-2 subfamily are potential molecular targets for selective cancer therapy.
Probab=41.68 E-value=27 Score=21.11 Aligned_cols=24 Identities=25% Similarity=0.253 Sum_probs=18.4
Q ss_pred CCCCCHHH--HHHHHHHHhhhccccc
Q psy2059 87 LYPKDPKA--RGIVNQRLYFDIGTLY 110 (126)
Q Consensus 87 l~p~~~~~--~~~~~~wl~~~~~~~~ 110 (126)
-.|.||.. +.+|.+|+.|+...+.
T Consensus 14 ~Ip~DP~~Wt~~~V~~WL~Wa~~ef~ 39 (89)
T cd08543 14 GIPKNPWLWTEQQVCQWLLWATNEFS 39 (89)
T ss_pred CCCCChhhCCHHHHHHHHHHHHHHcC
Confidence 45667765 7899999999877664
No 168
>KOG2824|consensus
Probab=41.58 E-value=35 Score=25.05 Aligned_cols=58 Identities=12% Similarity=0.180 Sum_probs=41.9
Q ss_pred hHHHHHHHHHHhCCCceEEEccCCCCCCCChhHhhhC----CCCccceeeeecCCCeeeechHHHHH
Q psy2059 13 PCRAVQLAAAQIGVPLNLKHTDLMKGEHLTPEFLKLN----PQHTVPYSQQTNSQEYRREESRAIIA 75 (126)
Q Consensus 13 ~~~~v~~~l~~~gi~~~~~~v~~~~~~~~~~~~~~~~----p~~~vP~L~~~~~~~~~l~eS~aI~~ 75 (126)
.|..||.+|+-.++.|+.+.|.+..+ ..+|...+. -.-.+|.+ .-+|..|...--|.+
T Consensus 149 ~C~~VR~ilesf~V~v~ERDVSMd~~--fr~EL~~~lg~~~~~~~LPrV---FV~GryIGgaeeV~~ 210 (281)
T KOG2824|consen 149 DCNAVRAILESFRVKVDERDVSMDSE--FREELQELLGEDEKAVSLPRV---FVKGRYIGGAEEVVR 210 (281)
T ss_pred HHHHHHHHHHhCceEEEEecccccHH--HHHHHHHHHhcccccCccCeE---EEccEEeccHHHhhh
Confidence 47789999999999999999988642 334443322 24468977 788888877666655
No 169
>cd03020 DsbA_DsbC_DsbG DsbA family, DsbC and DsbG subfamily; V-shaped homodimeric proteins containing a redox active CXXC motif imbedded in a TRX fold. They function as protein disulfide isomerases and chaperones in the bacterial periplasm to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins. DsbC and DsbG are kept in their reduced state by the cytoplasmic membrane protein DsbD, which utilizes the TRX/TRX reductase system in the cytosol as a source of reducing equivalents. DsbG differ from DsbC in that it has a more limited substrate specificity, and it may preferentially act later in the folding process to catalyze disulfide rearrangements in folded or partially folded proteins. Also included in the alignment is the predicted protein TrbB, whose gene was sequenced from the enterohemorrhagic E. coli type IV pilus gene cluster, which is required for efficient plasmid transfer.
Probab=41.43 E-value=52 Score=22.27 Aligned_cols=31 Identities=16% Similarity=0.301 Sum_probs=21.9
Q ss_pred eEEecCCCCchHHHHHHHHHH--hCCCceEEEc
Q psy2059 3 IDFYYVPGSAPCRAVQLAAAQ--IGVPLNLKHT 33 (126)
Q Consensus 3 ~~Ly~~~~s~~~~~v~~~l~~--~gi~~~~~~v 33 (126)
+.+|..+.||+|++..-.+.. .++.+....+
T Consensus 81 i~~f~D~~Cp~C~~~~~~l~~~~~~v~v~~~~~ 113 (197)
T cd03020 81 VYVFTDPDCPYCRKLEKELKPNADGVTVRIFPV 113 (197)
T ss_pred EEEEECCCCccHHHHHHHHhhccCceEEEEEEc
Confidence 568889999999999887774 3444444443
No 170
>cd03024 DsbA_FrnE DsbA family, FrnE subfamily; FrnE is a DsbA-like protein containing a CXXC motif. It is presumed to be a thiol oxidoreductase involved in polyketide biosynthesis, specifically in the production of the aromatic antibiotics frenolicin and nanaomycins.
Probab=40.50 E-value=53 Score=21.96 Aligned_cols=34 Identities=21% Similarity=0.222 Sum_probs=22.0
Q ss_pred eEEecCCCCchHHHH----HHHHHHh----CCCceEEEccCC
Q psy2059 3 IDFYYVPGSAPCRAV----QLAAAQI----GVPLNLKHTDLM 36 (126)
Q Consensus 3 ~~Ly~~~~s~~~~~v----~~~l~~~----gi~~~~~~v~~~ 36 (126)
+++|....||+|... +-+++.. ++.++.+.+.+.
T Consensus 1 I~~~~D~~cP~cyl~~~~l~~~~~~~~~~~~~~v~~~p~~L~ 42 (201)
T cd03024 1 IDIWSDVVCPWCYIGKRRLEKALAELGDEVDVEIEWRPFELN 42 (201)
T ss_pred CeEEecCcCccHHHHHHHHHHHHHhCCCCCceEEEEeeeeeC
Confidence 468999999999944 3344454 455665555443
No 171
>COG5494 Predicted thioredoxin/glutaredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=39.14 E-value=92 Score=22.20 Aligned_cols=58 Identities=16% Similarity=0.062 Sum_probs=39.2
Q ss_pred CeeEEecCCCCchHHHHHHHHHHhCCCceEEEccCCCCCCCChhHh-hhCCCCccceeeeecCCCee
Q psy2059 1 MTIDFYYVPGSAPCRAVQLAAAQIGVPLNLKHTDLMKGEHLTPEFL-KLNPQHTVPYSQQTNSQEYR 66 (126)
Q Consensus 1 M~~~Ly~~~~s~~~~~v~~~l~~~gi~~~~~~v~~~~~~~~~~~~~-~~~p~~~vP~L~~~~~~~~~ 66 (126)
|..++|.+..|..|...--.|+.+|+-=....++.. .+-|. -.|---.+|.+ .-||..
T Consensus 11 ~~VkI~~HktC~ssy~Lf~~L~nkgll~~Vkii~a~-----~p~f~~~~~~V~SvP~V---f~DGel 69 (265)
T COG5494 11 MEVKIFTHKTCVSSYMLFEYLENKGLLGKVKIIDAE-----LPPFLAFEKGVISVPSV---FIDGEL 69 (265)
T ss_pred eEEEEEEecchHHHHHHHHHHHhcCCCCCceEEEcC-----CChHHHhhcceeecceE---EEcCeE
Confidence 568899999999999999999999986665555432 23333 22334458877 555543
No 172
>cd01557 BCAT_beta_family BCAT_beta_family: Branched-chain aminotransferase catalyses the transamination of the branched-chain amino acids leusine, isoleucine and valine to their respective alpha-keto acids, alpha-ketoisocaproate, alpha-keto-beta-methylvalerate and alpha-ketoisovalerate. The enzyme requires pyridoxal 5'-phosphate (PLP) as a cofactor to catalyze the reaction. It has been found that mammals have two foms of the enzyme - mitochondrial and cytosolic forms while bacteria contain only one form of the enzyme. The mitochondrial form plays a significant role in skeletal muscle glutamine and alanine synthesis and in interorgan nitrogen metabolism.Members of this subgroup are widely distributed in all three forms of life.
Probab=38.53 E-value=17 Score=26.28 Aligned_cols=60 Identities=10% Similarity=0.032 Sum_probs=36.8
Q ss_pred HHHHHhCCCceEEEccCCCCCCCChhHhhhCCCCccceeeeecCCCeee----echHHHHHHHHHHh
Q psy2059 19 LAAAQIGVPLNLKHTDLMKGEHLTPEFLKLNPQHTVPYSQQTNSQEYRR----EESRAIIAYLAEQY 81 (126)
Q Consensus 19 ~~l~~~gi~~~~~~v~~~~~~~~~~~~~~~~p~~~vP~L~~~~~~~~~l----~eS~aI~~yL~~~~ 81 (126)
-+++..|++++...+.+..-....+-|+--+..|-+|+- .-++..+ .....|.+.|.+.|
T Consensus 210 ~~~~~~Gi~v~e~~i~~~~l~~ade~f~~ns~~gi~pV~---~i~~~~~~~~~~~~gp~~~~l~~~~ 273 (279)
T cd01557 210 ELARDLGIKVEERPITRDELYEADEVFATGTAAVVTPVG---EIDYRGKEPGEGEVGPVTKKLYDLL 273 (279)
T ss_pred HHHHHcCCeEEEEeCCHHHHhhCCEEEEecceeEEEEEE---EEccccccCCCCCCCHHHHHHHHHH
Confidence 356778999998888764323334455555567889998 5555544 34455555555443
No 173
>PF09413 DUF2007: Domain of unknown function (DUF2007); InterPro: IPR018551 This is a family of proteins with unknown function. ; PDB: 2HFV_A.
Probab=38.30 E-value=26 Score=19.29 Aligned_cols=30 Identities=13% Similarity=0.242 Sum_probs=19.5
Q ss_pred EEecCCCCchHHHHHHHHHHhCCCceEEEc
Q psy2059 4 DFYYVPGSAPCRAVQLAAAQIGVPLNLKHT 33 (126)
Q Consensus 4 ~Ly~~~~s~~~~~v~~~l~~~gi~~~~~~v 33 (126)
++|......-+..++-+|+..||++....-
T Consensus 2 ~l~~~~~~~ea~~i~~~L~~~gI~~~v~~~ 31 (67)
T PF09413_consen 2 KLYTAGDPIEAELIKGLLEENGIPAFVKNE 31 (67)
T ss_dssp EEEEE--HHHHHHHHHHHHHTT--EE--S-
T ss_pred EEEEcCCHHHHHHHHHHHHhCCCcEEEECC
Confidence 677777777788999999999999976443
No 174
>cd00449 PLPDE_IV PyridoxaL 5'-Phosphate Dependent Enzymes class IV (PLPDE_IV). This D-amino acid superfamily, one of five classes of PLPDE, consists of branched-chain amino acid aminotransferases (BCAT), D-amino acid transferases (DAAT), and 4-amino-4-deoxychorismate lyases (ADCL). BCAT catalyzes the reversible transamination reaction between the L-branched-chain amino and alpha-keto acids. DAAT catalyzes the synthesis of D-glutamic acid and D-alanine, and ADCL converts 4-amino-4-deoxychorismate to p-aminobenzoate and pyruvate. Except for a few enzymes, i. e., Escherichia coli and Salmonella BCATs, which are homohexamers arranged as a double trimer, the class IV PLPDEs are homodimers. Homodimer formation is required for catalytic activity.
Probab=38.05 E-value=20 Score=25.25 Aligned_cols=57 Identities=14% Similarity=0.137 Sum_probs=35.8
Q ss_pred HHHHhCCCceEEEccCCCCCCCChhHhhhCCCCccceeeeecCCCeee--echHHHHHHHHH
Q psy2059 20 AAAQIGVPLNLKHTDLMKGEHLTPEFLKLNPQHTVPYSQQTNSQEYRR--EESRAIIAYLAE 79 (126)
Q Consensus 20 ~l~~~gi~~~~~~v~~~~~~~~~~~~~~~~p~~~vP~L~~~~~~~~~l--~eS~aI~~yL~~ 79 (126)
.++..|++++...+.+..-....+-|+--+..|-+|+- .-++..+ .....+.+.|.+
T Consensus 196 ~~~~~g~~v~e~~i~~~dL~~adevfl~ns~~gv~pV~---~i~~~~~~~~~~~~~~~~l~~ 254 (256)
T cd00449 196 LAKELGIKVEERPISLDELYAADEVFLTGTAAEVTPVT---EIDGRGIGDGKPGPVTRKLRE 254 (256)
T ss_pred HHHHcCCeEEEEecCHHHHhhCCEEEEccccceEEEEE---EECCeecCCCCCCHHHHHHHH
Confidence 56778999988888764433334555555557889998 5555554 344556665544
No 175
>TIGR01162 purE phosphoribosylaminoimidazole carboxylase, PurE protein. Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. This model represents PurK, an N5-CAIR mutase.
Probab=37.94 E-value=34 Score=22.89 Aligned_cols=36 Identities=14% Similarity=0.254 Sum_probs=26.5
Q ss_pred CchHHHHHHHHHHhCCCceEEEccCCCCCCCChhHh
Q psy2059 11 SAPCRAVQLAAAQIGVPLNLKHTDLMKGEHLTPEFL 46 (126)
Q Consensus 11 s~~~~~v~~~l~~~gi~~~~~~v~~~~~~~~~~~~~ 46 (126)
-+.++++...|+..|++|+.......+...+..+|.
T Consensus 11 ~~~~~~a~~~L~~~gi~~dv~V~SaHRtp~~~~~~~ 46 (156)
T TIGR01162 11 LPTMKKAADILEEFGIPYELRVVSAHRTPELMLEYA 46 (156)
T ss_pred HHHHHHHHHHHHHcCCCeEEEEECcccCHHHHHHHH
Confidence 346789999999999999998887765333334554
No 176
>cd02949 TRX_NTR TRX domain, novel NADPH thioredoxin reductase (NTR) family; composed of fusion proteins found only in oxygenic photosynthetic organisms containing both TRX and NTR domains. The TRX domain functions as a protein disulfide reductase via the reversible oxidation of an active center dithiol present in a CXXC motif, while the NTR domain functions as a reductant to oxidized TRX. The fusion protein is bifunctional, showing both TRX and NTR activities, but it is not an independent NTR/TRX system. In plants, the protein is found exclusively in shoots and mature leaves and is localized in the chloroplast. It is involved in plant protection against oxidative stress.
Probab=37.91 E-value=85 Score=18.33 Aligned_cols=52 Identities=17% Similarity=0.295 Sum_probs=32.3
Q ss_pred eEEecCCCCchHHHHHHHHHH----hCCCceEEEccCCCCCCCChhHhhhCCCCccceee
Q psy2059 3 IDFYYVPGSAPCRAVQLAAAQ----IGVPLNLKHTDLMKGEHLTPEFLKLNPQHTVPYSQ 58 (126)
Q Consensus 3 ~~Ly~~~~s~~~~~v~~~l~~----~gi~~~~~~v~~~~~~~~~~~~~~~~p~~~vP~L~ 58 (126)
+.+|+.+.|+.|....-.++. .+-.+....+|.. ..+++.+..-...+|++.
T Consensus 17 lv~f~a~~C~~C~~~~~~l~~l~~~~~~~v~~~~id~d----~~~~l~~~~~v~~vPt~~ 72 (97)
T cd02949 17 LVLYTSPTCGPCRTLKPILNKVIDEFDGAVHFVEIDID----EDQEIAEAAGIMGTPTVQ 72 (97)
T ss_pred EEEEECCCChhHHHHHHHHHHHHHHhCCceEEEEEECC----CCHHHHHHCCCeeccEEE
Confidence 567888999999977666544 2223555566654 244554444456789774
No 177
>PRK00625 shikimate kinase; Provisional
Probab=37.90 E-value=59 Score=21.82 Aligned_cols=28 Identities=18% Similarity=0.184 Sum_probs=25.6
Q ss_pred CeeEEecCCCCchHHHHHHHHHHhCCCc
Q psy2059 1 MTIDFYYVPGSAPCRAVQLAAAQIGVPL 28 (126)
Q Consensus 1 M~~~Ly~~~~s~~~~~v~~~l~~~gi~~ 28 (126)
|.+.|.|.++|+-+-..+.+.+..|.++
T Consensus 1 ~~I~LiG~pGsGKTT~~k~La~~l~~~~ 28 (173)
T PRK00625 1 MQIFLCGLPTVGKTSFGKALAKFLSLPF 28 (173)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhCCCE
Confidence 6788999999999999999999999877
No 178
>PF13728 TraF: F plasmid transfer operon protein
Probab=37.84 E-value=1.4e+02 Score=20.84 Aligned_cols=32 Identities=22% Similarity=0.366 Sum_probs=25.4
Q ss_pred eEEecCCCCchHH----HHHHHHHHhCCCceEEEcc
Q psy2059 3 IDFYYVPGSAPCR----AVQLAAAQIGVPLNLKHTD 34 (126)
Q Consensus 3 ~~Ly~~~~s~~~~----~v~~~l~~~gi~~~~~~v~ 34 (126)
+.+++...|++|. .++.+....|+.+..+.+|
T Consensus 124 L~~F~~~~C~~C~~~~pil~~~~~~yg~~v~~vs~D 159 (215)
T PF13728_consen 124 LFFFYRSDCPYCQQQAPILQQFADKYGFSVIPVSLD 159 (215)
T ss_pred EEEEEcCCCchhHHHHHHHHHHHHHhCCEEEEEecC
Confidence 4577778899997 5678888899988877776
No 179
>PF07511 DUF1525: Protein of unknown function (DUF1525); InterPro: IPR011090 This family of proteins is restricted to the Gammaproteobacteria. Members belong to extended genomic regions that appear to be spread by conjugative transfer.
Probab=37.77 E-value=43 Score=21.18 Aligned_cols=27 Identities=15% Similarity=0.060 Sum_probs=21.6
Q ss_pred CCccceeeeecCCCeeeechHHHHHHHHH
Q psy2059 51 QHTVPYSQQTNSQEYRREESRAIIAYLAE 79 (126)
Q Consensus 51 ~~~vP~L~~~~~~~~~l~eS~aI~~yL~~ 79 (126)
..|+|+++ .++..+++....+.+-+..
T Consensus 81 i~k~PAVV--fD~~~VVYG~tDV~~A~~~ 107 (114)
T PF07511_consen 81 ITKYPAVV--FDDRYVVYGETDVARALAR 107 (114)
T ss_pred ccccCEEE--EcCCeEEecccHHHHHHHH
Confidence 55899997 7888999988888776654
No 180
>cd02984 TRX_PICOT TRX domain, PICOT (for PKC-interacting cousin of TRX) subfamily; PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT contains an N-terminal TRX-like domain, which does not contain the catalytic CXXC motif, followed by one to three glutaredoxin domains. The TRX-like domain is required for interaction with PKC theta. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli.
Probab=36.73 E-value=85 Score=18.01 Aligned_cols=52 Identities=13% Similarity=0.214 Sum_probs=32.5
Q ss_pred eEEecCCCCchHHHHHHHHHHh----CCCceEEEccCCCCCCCChhHhhhCCCCccceee
Q psy2059 3 IDFYYVPGSAPCRAVQLAAAQI----GVPLNLKHTDLMKGEHLTPEFLKLNPQHTVPYSQ 58 (126)
Q Consensus 3 ~~Ly~~~~s~~~~~v~~~l~~~----gi~~~~~~v~~~~~~~~~~~~~~~~p~~~vP~L~ 58 (126)
+..|+.+.|+.|++..-.++.. +..+....+|.. ..++..+......+|++.
T Consensus 18 ~v~f~~~~C~~C~~~~~~l~~l~~~~~~~i~~~~vd~~----~~~~~~~~~~i~~~Pt~~ 73 (97)
T cd02984 18 VLHFWAPWAEPCKQMNQVFEELAKEAFPSVLFLSIEAE----ELPEISEKFEITAVPTFV 73 (97)
T ss_pred EEEEECCCCHHHHHHhHHHHHHHHHhCCceEEEEEccc----cCHHHHHhcCCccccEEE
Confidence 4567788999999886666542 335566666543 234554444456799774
No 181
>cd02963 TRX_DnaJ TRX domain, DnaJ domain containing protein family; composed of uncharacterized proteins of about 500-800 amino acids, containing an N-terminal DnaJ domain followed by one redox active TRX domain. DnaJ is a member of the 40 kDa heat-shock protein (Hsp40) family of molecular chaperones, which regulate the activity of Hsp70s. TRX is involved in the redox regulation of many protein substrates through the reduction of disulfide bonds. TRX has been implicated to catalyse the reduction of Hsp33, a chaperone holdase that binds to unfolded protein intermediates. The presence of DnaJ and TRX domains in members of this family suggests that they could be involved in a redox-regulated chaperone network.
Probab=35.72 E-value=1e+02 Score=18.65 Aligned_cols=52 Identities=8% Similarity=-0.006 Sum_probs=30.1
Q ss_pred eEEecCCCCchHHHHHHHH-----HHhCCCceEEEccCCCCCCCChhHhhhCCCCccceee
Q psy2059 3 IDFYYVPGSAPCRAVQLAA-----AQIGVPLNLKHTDLMKGEHLTPEFLKLNPQHTVPYSQ 58 (126)
Q Consensus 3 ~~Ly~~~~s~~~~~v~~~l-----~~~gi~~~~~~v~~~~~~~~~~~~~~~~p~~~vP~L~ 58 (126)
+..++.+.|+.|+...-.+ +..+..+....+|... .+.......-..+|++.
T Consensus 28 lV~F~a~wC~~C~~~~p~~~~l~~~~~~~~v~~~~vd~d~----~~~l~~~~~V~~~Pt~~ 84 (111)
T cd02963 28 LIKITSDWCFSCIHIEPVWKEVIQELEPLGVGIATVNAGH----ERRLARKLGAHSVPAIV 84 (111)
T ss_pred EEEEECCccHhHHHhhHHHHHHHHHHHhcCceEEEEeccc----cHHHHHHcCCccCCEEE
Confidence 4567888899887554222 2233345555565542 34444555567899873
No 182
>COG0424 Maf Nucleotide-binding protein implicated in inhibition of septum formation [Cell division and chromosome partitioning]
Probab=35.16 E-value=68 Score=22.26 Aligned_cols=34 Identities=21% Similarity=0.368 Sum_probs=25.2
Q ss_pred CeeEEecCCCCchHHHHHHHHHHhCCCceEEEccCCC
Q psy2059 1 MTIDFYYVPGSAPCRAVQLAAAQIGVPLNLKHTDLMK 37 (126)
Q Consensus 1 M~~~Ly~~~~s~~~~~v~~~l~~~gi~~~~~~v~~~~ 37 (126)
|++.|+-...|| +| +-+|+..|++|+...-+++.
T Consensus 1 ~~~~LiLAS~SP--rR-~elL~~~gi~f~~~~~~iDE 34 (193)
T COG0424 1 MMPRLILASSSP--RR-RELLEQLGIPFEVIPSDIDE 34 (193)
T ss_pred CCccEEEecCCH--HH-HHHHHHCCCCeEEecCCCCC
Confidence 556777777776 33 56789999999988877764
No 183
>PRK06606 branched-chain amino acid aminotransferase; Validated
Probab=34.98 E-value=31 Score=25.29 Aligned_cols=59 Identities=12% Similarity=0.103 Sum_probs=36.4
Q ss_pred HHHHhCCCceEEEccCCCCCCCChhHhhhCCCCccceeeeecCCCeeee--chHHHHHHHHHHh
Q psy2059 20 AAAQIGVPLNLKHTDLMKGEHLTPEFLKLNPQHTVPYSQQTNSQEYRRE--ESRAIIAYLAEQY 81 (126)
Q Consensus 20 ~l~~~gi~~~~~~v~~~~~~~~~~~~~~~~p~~~vP~L~~~~~~~~~l~--eS~aI~~yL~~~~ 81 (126)
+++..|++++...+.+..-....+-|+-.+..|-+|+- .-|+..+. ....+.+.|.+.+
T Consensus 228 ~~~~~g~~v~e~~i~~~eL~~AdevfltnS~~gi~PV~---~id~~~~~~g~~g~~~~~L~~~~ 288 (306)
T PRK06606 228 LAKDLGIEVIERRITRDELYIADEVFFTGTAAEVTPIR---EVDGRQIGNGKRGPITEKLQSAY 288 (306)
T ss_pred HHHHcCCcEEEEeCCHHHHhhCCEEEEcCCcceEEEEE---EECcEECCCCCCCHHHHHHHHHH
Confidence 56778999998888764323334555555667889998 55666553 2344444444333
No 184
>PRK11657 dsbG disulfide isomerase/thiol-disulfide oxidase; Provisional
Probab=34.84 E-value=58 Score=23.32 Aligned_cols=20 Identities=15% Similarity=0.286 Sum_probs=16.2
Q ss_pred eEEecCCCCchHHHHHHHHH
Q psy2059 3 IDFYYVPGSAPCRAVQLAAA 22 (126)
Q Consensus 3 ~~Ly~~~~s~~~~~v~~~l~ 22 (126)
+.+|..+.||||++..-.+.
T Consensus 121 I~vFtDp~CpyC~kl~~~l~ 140 (251)
T PRK11657 121 VYVFADPNCPYCKQFWQQAR 140 (251)
T ss_pred EEEEECCCChhHHHHHHHHH
Confidence 56788999999999876654
No 185
>PRK06092 4-amino-4-deoxychorismate lyase; Reviewed
Probab=34.18 E-value=42 Score=23.93 Aligned_cols=58 Identities=19% Similarity=0.103 Sum_probs=37.1
Q ss_pred HHHHhCCCceEEEccCCCCCCCChhHhhhCCCCccceeeeecCCCeeeechHHHHHHHHHHh
Q psy2059 20 AAAQIGVPLNLKHTDLMKGEHLTPEFLKLNPQHTVPYSQQTNSQEYRREESRAIIAYLAEQY 81 (126)
Q Consensus 20 ~l~~~gi~~~~~~v~~~~~~~~~~~~~~~~p~~~vP~L~~~~~~~~~l~eS~aI~~yL~~~~ 81 (126)
.++..|++++...+....-....+-|+--+-.|-+||. .-|+..+ ++..+.+.|.+.+
T Consensus 208 ~~~~~g~~v~e~~i~~~dL~~adevfltns~~gi~pV~---~id~~~~-~~g~~~~~l~~~~ 265 (268)
T PRK06092 208 LLAQSGYPVVEVDASLEELLQADEVFICNSLMPVWPVR---AIGETSY-SSGTLTRYLQPLC 265 (268)
T ss_pred HHHHcCCeEEEEECCHHHHhhCCEEEEeCCcceEEEEE---EECCEEc-cchHHHHHHHHHH
Confidence 45667899998888764323334455545567889998 6566655 3356766666544
No 186
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=33.20 E-value=76 Score=24.84 Aligned_cols=31 Identities=13% Similarity=0.233 Sum_probs=27.5
Q ss_pred eeEEecCCCCchHHHHHHHHHHhCCCceEEE
Q psy2059 2 TIDFYYVPGSAPCRAVQLAAAQIGVPLNLKH 32 (126)
Q Consensus 2 ~~~Ly~~~~s~~~~~v~~~l~~~gi~~~~~~ 32 (126)
+|.||+-|+++-+-.++++....+.+|+...
T Consensus 50 SmIl~GPPG~GKTTlA~liA~~~~~~f~~~s 80 (436)
T COG2256 50 SMILWGPPGTGKTTLARLIAGTTNAAFEALS 80 (436)
T ss_pred eeEEECCCCCCHHHHHHHHHHhhCCceEEec
Confidence 4899999999999999999999999986543
No 187
>PRK13947 shikimate kinase; Provisional
Probab=33.01 E-value=73 Score=20.67 Aligned_cols=28 Identities=14% Similarity=0.129 Sum_probs=25.2
Q ss_pred Ce-eEEecCCCCchHHHHHHHHHHhCCCc
Q psy2059 1 MT-IDFYYVPGSAPCRAVQLAAAQIGVPL 28 (126)
Q Consensus 1 M~-~~Ly~~~~s~~~~~v~~~l~~~gi~~ 28 (126)
|+ +.|.+.++|+-+...+.+.+..|.+|
T Consensus 1 m~~I~l~G~~GsGKst~a~~La~~lg~~~ 29 (171)
T PRK13947 1 MKNIVLIGFMGTGKTTVGKRVATTLSFGF 29 (171)
T ss_pred CCeEEEEcCCCCCHHHHHHHHHHHhCCCE
Confidence 54 88999999999999999999999887
No 188
>PRK13356 aminotransferase; Provisional
Probab=32.74 E-value=35 Score=24.68 Aligned_cols=57 Identities=12% Similarity=0.001 Sum_probs=35.7
Q ss_pred HHHHhCCCceEEEccCCCCCCCChhHhhhCCCCccceeeeecCCCeeeechHHHHHHHHHH
Q psy2059 20 AAAQIGVPLNLKHTDLMKGEHLTPEFLKLNPQHTVPYSQQTNSQEYRREESRAIIAYLAEQ 80 (126)
Q Consensus 20 ~l~~~gi~~~~~~v~~~~~~~~~~~~~~~~p~~~vP~L~~~~~~~~~l~eS~aI~~yL~~~ 80 (126)
+++..|++++...+.+..-....+-|+--+..+-+||- .-||..+. ...+.+.|.+.
T Consensus 221 ~a~~~gi~v~e~~i~~~eL~~adevfltns~~gi~PV~---~id~~~~~-~g~~~~~l~~~ 277 (286)
T PRK13356 221 LLREDGVTVVETTLTYEDFLEADEVFSTGNYSKVVPVT---RFDDRSLQ-PGPVTRRAREL 277 (286)
T ss_pred HHHHcCCeEEEEecCHHHHHhcCceEEecChheEEEEE---EECCEEec-CChHHHHHHHH
Confidence 56788999999888764322334555655667888998 55666553 23455544443
No 189
>TIGR01764 excise DNA binding domain, excisionase family. An excisionase, or Xis protein, is a small protein that binds and promotes excisive recombination; it is not enzymatically active. This model represents a number of putative excisionases and related proteins from temperate phage, plasmids, and transposons, as well as DNA binding domains of other proteins, such as a DNA modification methylase. This model identifies mostly small proteins and N-terminal regions of large proteins, but some proteins appear to have two copies. This domain appears similar, in both sequence and predicted secondary structure (PSIPRED) to the MerR family of transcriptional regulators (pfam00376).
Probab=32.66 E-value=59 Score=15.98 Aligned_cols=25 Identities=16% Similarity=0.171 Sum_probs=19.2
Q ss_pred CCccceeeeecCCCeeeechHHHHHHHH
Q psy2059 51 QHTVPYSQQTNSQEYRREESRAIIAYLA 78 (126)
Q Consensus 51 ~~~vP~L~~~~~~~~~l~eS~aI~~yL~ 78 (126)
.|.+|.. ..++..+.....|.+|+.
T Consensus 24 ~g~i~~~---~~g~~~~~~~~~l~~~~~ 48 (49)
T TIGR01764 24 EGELPAY---RVGRHYRIPREDVDEYLE 48 (49)
T ss_pred cCCCCeE---EeCCeEEEeHHHHHHHHh
Confidence 5678887 557788888888888775
No 190
>smart00251 SAM_PNT SAM / Pointed domain. A subfamily of the SAM domain
Probab=32.36 E-value=50 Score=19.44 Aligned_cols=24 Identities=21% Similarity=0.281 Sum_probs=18.0
Q ss_pred CCCCCHHH--HHHHHHHHhhhccccc
Q psy2059 87 LYPKDPKA--RGIVNQRLYFDIGTLY 110 (126)
Q Consensus 87 l~p~~~~~--~~~~~~wl~~~~~~~~ 110 (126)
..|.||.. +.+|.+|+.|+...+.
T Consensus 12 ~ip~dP~~Wt~~~V~~Wl~w~~~ef~ 37 (82)
T smart00251 12 GIPADPQLWTEDHVLEWLEWAVKEFS 37 (82)
T ss_pred CCCCChhhCCHHHHHHHHHHHHHhcC
Confidence 45667664 7889999999887654
No 191
>PF00731 AIRC: AIR carboxylase; InterPro: IPR000031 Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. PurK, N5-carboxyaminoimidazole ribonucleotide (N5_CAIR) synthetase, catalyzes the conversion of 5-aminoimidazole ribonucleotide (AIR), ATP, and bicarbonate to N5-CAIR, ADP, and Pi. PurE converts N5-CAIR to CAIR, the sixth step of de novo purine biosynthesis. In the presence of high concentrations of bicarbonate, PurE is reported able to convert AIR to CAIR directly and without ATP. Some members of this family contain two copies of this domain []. The crystal structure of PurE indicates a unique quaternary structure that confirms the octameric nature of the enzyme [].; GO: 0004638 phosphoribosylaminoimidazole carboxylase activity, 0006189 'de novo' IMP biosynthetic process; PDB: 3TRH_O 2YWX_A 2NSL_A 1D7A_A 2NSJ_A 1QCZ_A 2ATE_A 2NSH_A 3RG8_C 3RGG_D ....
Probab=32.11 E-value=27 Score=23.15 Aligned_cols=27 Identities=7% Similarity=0.229 Sum_probs=20.2
Q ss_pred CchHHHHHHHHHHhCCCceEEEccCCC
Q psy2059 11 SAPCRAVQLAAAQIGVPLNLKHTDLMK 37 (126)
Q Consensus 11 s~~~~~v~~~l~~~gi~~~~~~v~~~~ 37 (126)
-+.+.+++-.|++.|++|+.......+
T Consensus 13 ~~~~~~a~~~L~~~gi~~~~~V~saHR 39 (150)
T PF00731_consen 13 LPIAEEAAKTLEEFGIPYEVRVASAHR 39 (150)
T ss_dssp HHHHHHHHHHHHHTT-EEEEEE--TTT
T ss_pred HHHHHHHHHHHHHcCCCEEEEEEeccC
Confidence 457889999999999999988776654
No 192
>PRK03839 putative kinase; Provisional
Probab=31.39 E-value=81 Score=20.78 Aligned_cols=28 Identities=25% Similarity=0.358 Sum_probs=25.1
Q ss_pred CeeEEecCCCCchHHHHHHHHHHhCCCc
Q psy2059 1 MTIDFYYVPGSAPCRAVQLAAAQIGVPL 28 (126)
Q Consensus 1 M~~~Ly~~~~s~~~~~v~~~l~~~gi~~ 28 (126)
|.+.|.|.++|+-+-..+.+.+..|+++
T Consensus 1 m~I~l~G~pGsGKsT~~~~La~~~~~~~ 28 (180)
T PRK03839 1 MIIAITGTPGVGKTTVSKLLAEKLGYEY 28 (180)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhCCcE
Confidence 5678999999999999999999999877
No 193
>TIGR01122 ilvE_I branched-chain amino acid aminotransferase, group I. Among the class IV aminotransferases are two phylogenetically separable groups of branched-chain amino acid aminotransferase (IlvE). The last common ancestor of the two lineages appears also to have given rise to a family of D-amino acid aminotransferases (DAAT). This model represents the IlvE family more strongly similar to the DAAT family.
Probab=30.23 E-value=41 Score=24.50 Aligned_cols=58 Identities=10% Similarity=0.092 Sum_probs=35.7
Q ss_pred HHHHhCCCceEEEccCCCCCCCChhHhhhCCCCccceeeeecCCCeeee--chHHHHHHHHHH
Q psy2059 20 AAAQIGVPLNLKHTDLMKGEHLTPEFLKLNPQHTVPYSQQTNSQEYRRE--ESRAIIAYLAEQ 80 (126)
Q Consensus 20 ~l~~~gi~~~~~~v~~~~~~~~~~~~~~~~p~~~vP~L~~~~~~~~~l~--eS~aI~~yL~~~ 80 (126)
+++..|++++...+.+..-....+-|+--+..|-+|+- .-|+..+. ....+.+.|.+.
T Consensus 220 la~~~g~~v~e~~i~~~eL~~adevfltns~~gv~PV~---~id~~~~~~~~~g~~~~~l~~~ 279 (298)
T TIGR01122 220 LAKELGIEVVEQPISREELYTADEAFFTGTAAEITPIR---EVDGRKIGNGRRGPVTKKLQEA 279 (298)
T ss_pred HHHHcCCcEEEEeCCHHHHhhCCEEEEcCCcceEEEEE---EECCEECCCCCCChHHHHHHHH
Confidence 56788999999888764322334555555667889998 55565553 223444444433
No 194
>PF09868 DUF2095: Uncharacterized protein conserved in archaea (DUF2095); InterPro: IPR018662 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=29.79 E-value=32 Score=21.90 Aligned_cols=64 Identities=14% Similarity=0.031 Sum_probs=37.2
Q ss_pred HHHHHHHHhCCCceEEEccCCCCCCCChhHhhhCCCCccceeeeecCCCeeeechHHHHHHHHHH
Q psy2059 16 AVQLAAAQIGVPLNLKHTDLMKGEHLTPEFLKLNPQHTVPYSQQTNSQEYRREESRAIIAYLAEQ 80 (126)
Q Consensus 16 ~v~~~l~~~gi~~~~~~v~~~~~~~~~~~~~~~~p~~~vP~L~~~~~~~~~l~eS~aI~~yL~~~ 80 (126)
-++=+.+..|++.+...++-..+-...+. -...-.|.+|+++|+..--...-|..-|+.|+.++
T Consensus 27 LakEl~e~~g~~I~~~r~~~~~~l~~e~~-~~~~~sGy~PtViD~lrRC~T~EEALEVInylek~ 90 (128)
T PF09868_consen 27 LAKELEEEEGISIEGYRLDEEQVLEEEEE-EPDDFSGYNPTVIDYLRRCKTDEEALEVINYLEKR 90 (128)
T ss_pred HHHHHhccCCCceeeeechhhhhhhhccc-cCCCccCCCChHHHHHHHhCcHHHHHHHHHHHHHh
Confidence 34556677887776554442211000111 12333688999844334556677888899999975
No 195
>TIGR01121 D_amino_aminoT D-amino acid aminotransferase. Specificity is broad for various D-amino acids, and differs among members of the family; the family is designated equivalog, but with this caveat attached.
Probab=28.19 E-value=47 Score=23.88 Aligned_cols=62 Identities=10% Similarity=0.100 Sum_probs=37.6
Q ss_pred HHHHHHHhCCCceEEEccCCCCCCCChhHhhhCCCCccceeeeecCCCeeee--chHHHHHHHHHHh
Q psy2059 17 VQLAAAQIGVPLNLKHTDLMKGEHLTPEFLKLNPQHTVPYSQQTNSQEYRRE--ESRAIIAYLAEQY 81 (126)
Q Consensus 17 v~~~l~~~gi~~~~~~v~~~~~~~~~~~~~~~~p~~~vP~L~~~~~~~~~l~--eS~aI~~yL~~~~ 81 (126)
+.-+++..|++++...+.+..-....+-|+--+..|-+|+- .-|+..+. ....+.+.|.+.+
T Consensus 208 vl~~a~~~g~~v~e~~i~~~el~~ade~fltns~~gi~PV~---~id~~~~~~~~~g~~~~~L~~~~ 271 (276)
T TIGR01121 208 ILACAEENGIPVKEEPFTKEELLNADEVFVSSTTAEITPVI---EIDGQQIGDGKPGPWTRQLQKAF 271 (276)
T ss_pred HHHHHHHCCCeEEEEeCCHHHHhcCCEEEEecCcccEEEEE---EECCEECCCCCCCHHHHHHHHHH
Confidence 33367788999998888764433344556655567888998 54554442 2234555555443
No 196
>PF12728 HTH_17: Helix-turn-helix domain
Probab=28.02 E-value=94 Score=15.82 Aligned_cols=26 Identities=15% Similarity=0.116 Sum_probs=20.8
Q ss_pred CCccceeeeecCCCeeeechHHHHHHHHH
Q psy2059 51 QHTVPYSQQTNSQEYRREESRAIIAYLAE 79 (126)
Q Consensus 51 ~~~vP~L~~~~~~~~~l~eS~aI~~yL~~ 79 (126)
.|.+|.. ..++.....-..|.+|+.+
T Consensus 24 ~g~i~~~---~~g~~~~~~~~~l~~~~~~ 49 (51)
T PF12728_consen 24 QGKIPPF---KIGRKWRIPKSDLDRWLER 49 (51)
T ss_pred cCCCCeE---EeCCEEEEeHHHHHHHHHh
Confidence 5688888 7777788888888888875
No 197
>KOG0733|consensus
Probab=27.99 E-value=90 Score=26.07 Aligned_cols=27 Identities=15% Similarity=0.170 Sum_probs=24.8
Q ss_pred eEEecCCCCchHHHHHHHHHHhCCCce
Q psy2059 3 IDFYYVPGSAPCRAVQLAAAQIGVPLN 29 (126)
Q Consensus 3 ~~Ly~~~~s~~~~~v~~~l~~~gi~~~ 29 (126)
+-||+-|+|+-+.-++.+++|.|+.|-
T Consensus 548 vLL~GPPGCGKTLlAKAVANEag~NFi 574 (802)
T KOG0733|consen 548 VLLCGPPGCGKTLLAKAVANEAGANFI 574 (802)
T ss_pred eEEeCCCCccHHHHHHHHhhhccCceE
Confidence 568999999999999999999999984
No 198
>PRK07544 branched-chain amino acid aminotransferase; Validated
Probab=27.53 E-value=50 Score=23.97 Aligned_cols=57 Identities=23% Similarity=0.225 Sum_probs=35.3
Q ss_pred HHHHhCCCceEEEccCCCCCCCChhHhhhCCCCccceeeeecCCCeeeechHHHHHHHHHH
Q psy2059 20 AAAQIGVPLNLKHTDLMKGEHLTPEFLKLNPQHTVPYSQQTNSQEYRREESRAIIAYLAEQ 80 (126)
Q Consensus 20 ~l~~~gi~~~~~~v~~~~~~~~~~~~~~~~p~~~vP~L~~~~~~~~~l~eS~aI~~yL~~~ 80 (126)
+++..|++++...+.+..-....+-|+--+..|-+||. .-++..+. ...+.+.|.+.
T Consensus 225 ~a~~~g~~v~e~~i~~~eL~~adevfltnS~~gi~PV~---~i~~~~~~-~g~~~~~l~~~ 281 (292)
T PRK07544 225 LAKRRGIEVVERHIMPEELAGFSECFLTGTAAEVTPVS---EIGEYRFT-PGAITRDLMDD 281 (292)
T ss_pred HHHHcCCeEEEEecCHHHHhhcCceeecCccceEEEEE---EEeeEEeC-CChHHHHHHHH
Confidence 55678999998888764423334556655667889999 55655442 23444444433
No 199
>PF10189 DUF2356: Conserved protein (DUF2356); InterPro: IPR019333 The Integrator complex is involved in small nuclear RNA (snRNA) U1 and U2 transcription, and in their 3'-box-dependent processing. This complex associates with the C-terminal domain of RNA polymerase II largest subunit and is recruited to the U1 and U2 snRNAs genes []. This entry represents subunit 3 of this complex. The function of this subunit is unknown.
Probab=27.24 E-value=1e+02 Score=22.01 Aligned_cols=37 Identities=16% Similarity=0.152 Sum_probs=28.3
Q ss_pred HHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHhhhcc
Q psy2059 71 RAIIAYLAEQYGKDDSLYPKDPKARGIVNQRLYFDIG 107 (126)
Q Consensus 71 ~aI~~yL~~~~~~~~~l~p~~~~~~~~~~~wl~~~~~ 107 (126)
..|+||+...+-..+...+++...|+.+-.|+-...+
T Consensus 79 ~DlIRfIc~~~hP~Nevl~S~i~pRwavIgwLl~~c~ 115 (230)
T PF10189_consen 79 PDLIRFICCVYHPTNEVLQSDIIPRWAVIGWLLTTCK 115 (230)
T ss_pred HHHHHHHHHhcCChhcccccchhHHHHHHHHHHHHcC
Confidence 4589999988866555787888889999888765443
No 200
>PF13098 Thioredoxin_2: Thioredoxin-like domain; PDB: 1T3B_A 2L57_A 1EEJ_B 1TJD_A 1JZD_B 1JZO_A 1G0T_B 3GV1_A 1V58_A 2H0H_A ....
Probab=27.01 E-value=75 Score=18.89 Aligned_cols=35 Identities=6% Similarity=0.156 Sum_probs=20.7
Q ss_pred eEEecCCCCchHHHHHHHHHH---h----CCCceEEEccCCC
Q psy2059 3 IDFYYVPGSAPCRAVQLAAAQ---I----GVPLNLKHTDLMK 37 (126)
Q Consensus 3 ~~Ly~~~~s~~~~~v~~~l~~---~----gi~~~~~~v~~~~ 37 (126)
+.+|+.+.||+|++..-.+.. . .-.+..+.++...
T Consensus 9 v~~F~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 50 (112)
T PF13098_consen 9 VVVFTDPWCPYCKKLEKELFPDNDVARYLKDDFQVIFVNIDD 50 (112)
T ss_dssp EEEEE-TT-HHHHHHHHHHHHHHHHHCEEHCECEEEECESHS
T ss_pred EEEEECCCCHHHHHHHHHHHHHHHHHHHhhcCeEEEEEecCC
Confidence 457789999999988655542 1 1145666666643
No 201
>PRK03600 nrdI ribonucleotide reductase stimulatory protein; Reviewed
Probab=26.94 E-value=1.1e+02 Score=19.72 Aligned_cols=24 Identities=17% Similarity=0.479 Sum_probs=17.5
Q ss_pred CeeEEecCCCCchHHHHHHHHHHhCCC
Q psy2059 1 MTIDFYYVPGSAPCRAVQLAAAQIGVP 27 (126)
Q Consensus 1 M~~~Ly~~~~s~~~~~v~~~l~~~gi~ 27 (126)
|++++|++..++++++. ++..+.+
T Consensus 1 ~~~~I~Y~S~TGNt~~f---~~kl~~~ 24 (134)
T PRK03600 1 MMMLVYFSSKTGNTHRF---VQKLGLP 24 (134)
T ss_pred CcEEEEEECCChhHHHH---HHHhCCc
Confidence 67899999999998855 3444544
No 202
>PRK07650 4-amino-4-deoxychorismate lyase; Provisional
Probab=26.81 E-value=60 Score=23.41 Aligned_cols=57 Identities=12% Similarity=0.096 Sum_probs=35.1
Q ss_pred HHHHhCCCceEEEccCCCCCCCChhHhhhCCCCccceeeeecCCCeeee-chHHHHHHHHH
Q psy2059 20 AAAQIGVPLNLKHTDLMKGEHLTPEFLKLNPQHTVPYSQQTNSQEYRRE-ESRAIIAYLAE 79 (126)
Q Consensus 20 ~l~~~gi~~~~~~v~~~~~~~~~~~~~~~~p~~~vP~L~~~~~~~~~l~-eS~aI~~yL~~ 79 (126)
.++..|++++...+.+..-....+-|+-.+..|-+|+- .-++..+. ....+.+.|.+
T Consensus 212 ~~~~~g~~v~e~~i~~~dL~~adeifl~ns~~gv~pV~---~i~~~~~~g~~g~~~~~l~~ 269 (283)
T PRK07650 212 VLEELGIEVKEGFYTKEELLSADEVFVTNSIQEIVPLT---RIEERDFPGKVGMVTKRLQN 269 (283)
T ss_pred HHHHcCCeEEEEecCHHHHhhCCEeeeecCcccEEEEE---EECCEEeCCCCCHHHHHHHH
Confidence 56778999998887764322334555655567889999 55665552 22344444443
No 203
>PRK14532 adenylate kinase; Provisional
Probab=26.77 E-value=1e+02 Score=20.43 Aligned_cols=28 Identities=11% Similarity=0.171 Sum_probs=24.3
Q ss_pred CeeEEecCCCCchHHHHHHHHHHhCCCc
Q psy2059 1 MTIDFYYVPGSAPCRAVQLAAAQIGVPL 28 (126)
Q Consensus 1 M~~~Ly~~~~s~~~~~v~~~l~~~gi~~ 28 (126)
|.+.+.|.|+|+-+-.++.+++..|+.+
T Consensus 1 ~~i~~~G~pGsGKsT~a~~la~~~g~~~ 28 (188)
T PRK14532 1 MNLILFGPPAAGKGTQAKRLVEERGMVQ 28 (188)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHcCCeE
Confidence 6688999999999999999989888655
No 204
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=26.64 E-value=1.5e+02 Score=17.81 Aligned_cols=28 Identities=21% Similarity=0.250 Sum_probs=23.9
Q ss_pred eEEecCCCCchHHHHHHHHHHhCCCceE
Q psy2059 3 IDFYYVPGSAPCRAVQLAAAQIGVPLNL 30 (126)
Q Consensus 3 ~~Ly~~~~s~~~~~v~~~l~~~gi~~~~ 30 (126)
+-|+|-++++-+.-++.+++..|.++-.
T Consensus 1 ill~G~~G~GKT~l~~~la~~l~~~~~~ 28 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYLGFPFIE 28 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHTTSEEEE
T ss_pred CEEECcCCCCeeHHHHHHHhhccccccc
Confidence 3589999999999999999999876633
No 205
>COG3011 Predicted thiol-disulfide oxidoreductase [General function prediction only]
Probab=26.61 E-value=1.9e+02 Score=18.93 Aligned_cols=77 Identities=13% Similarity=-0.064 Sum_probs=45.0
Q ss_pred eEEecCCCCchHHHHHHHHHHhCCCceEEEccCCCCCCCChhHhhhCCCCcc-ceeeeecCCCeeeechHHHHHHHHHHh
Q psy2059 3 IDFYYVPGSAPCRAVQLAAAQIGVPLNLKHTDLMKGEHLTPEFLKLNPQHTV-PYSQQTNSQEYRREESRAIIAYLAEQY 81 (126)
Q Consensus 3 ~~Ly~~~~s~~~~~v~~~l~~~gi~~~~~~v~~~~~~~~~~~~~~~~p~~~v-P~L~~~~~~~~~l~eS~aI~~yL~~~~ 81 (126)
+.+++...|+.|-.---.|..+.-.-..+..++.. + ..-..+...+...- +.++.-+++|..+.+|.|+++-+...-
T Consensus 10 ~vvlyDG~C~lC~~~vrfLi~~D~~~~i~f~~~q~-e-~g~~~l~~~~l~~~~~~s~~~~~~g~~~~~sdA~~~i~~~L~ 87 (137)
T COG3011 10 LVVLYDGVCPLCDGWVRFLIRRDQGGRIRFAALQS-E-PGQALLEAAGLDPEDVDSVLLVEAGQLLVGSDAAIRILRLLP 87 (137)
T ss_pred EEEEECCcchhHHHHHHHHHHhccCCcEEEEeccC-c-hhhhHHhhcCCChhhhheeeEecCCceEeccHHHHHHHHHCC
Confidence 67888888998886666666665544444444322 1 11222333332221 222111578999999999999888754
No 206
>PF02198 SAM_PNT: Sterile alpha motif (SAM)/Pointed domain; InterPro: IPR003118 Transcription factors are protein molecules that bind to specific DNA sequences in the genome, resulting in the induction or inhibition of gene transcription []. The ets oncogene is such a factor, possessing a region of 85-90 amino acids known as the ETS (erythroblast transformation specific) domain [, ]. This domain is rich in positively-charged and aromatic residues, and binds to purine-rich segments of DNA. The ETS domain IPR000418 from INTERPRO has been identified in other transcription factors such as PU.1, human erg, human elf-1, human elk-1, GA binding protein, and a number of others [, , ]. It is generally localized at the C terminus of the protein, with the exception of ELF-1, ELK-1, ELK-3, ELK-4 and ERF where it is found at the N terminus. This entry describes the highly conserved PNT (or Pointed) domain which is found within a subset of the ETs domain (IPR000418 from INTERPRO ), including mammalian Ets-1, Ets-2, Erg, Fli-1, GABPalpha, and Tel, as well as Drosophila Pnt-P2 and Yan. The PNT domain (IPR001660 from INTERPRO ) through a common tertiary arrangement of four alpha-helices. A role in protein-protein association has been established for the PNT domain [, ].; GO: 0043565 sequence-specific DNA binding, 0005634 nucleus; PDB: 1SXE_A 1SXD_A 2KMD_A 2JV3_A 2E8P_A 1SV4_B 1SV0_B 1LKY_F 1JI7_B 2DKX_A ....
Probab=26.47 E-value=61 Score=18.96 Aligned_cols=24 Identities=29% Similarity=0.385 Sum_probs=18.5
Q ss_pred CCCCCHHH--HHHHHHHHhhhccccc
Q psy2059 87 LYPKDPKA--RGIVNQRLYFDIGTLY 110 (126)
Q Consensus 87 l~p~~~~~--~~~~~~wl~~~~~~~~ 110 (126)
..|.||.. +.+|.+|+.|....+.
T Consensus 12 ~~p~DP~~Wt~~~V~~Wl~w~~~~f~ 37 (84)
T PF02198_consen 12 WLPKDPRLWTKEDVLQWLRWVVREFD 37 (84)
T ss_dssp TSCSSGGG--HHHHHHHHHHHHHHTT
T ss_pred CCCCChhhCCHHHHHHHHHHHHHhcC
Confidence 66777765 7889999998877654
No 207
>TIGR03759 conj_TIGR03759 integrating conjugative element protein, PFL_4693 family. Members of this protein family, such as model protein PFL_4693 from Pseudomonas fluorescens Pf-5, belong to extended genomic regions that appear to be spread by conjugative transfer. Most members have a predicted N-terminal signal sequence. The function is unknown.
Probab=26.38 E-value=1.4e+02 Score=20.89 Aligned_cols=14 Identities=29% Similarity=0.411 Sum_probs=8.0
Q ss_pred HhhhCCCCccceee
Q psy2059 45 FLKLNPQHTVPYSQ 58 (126)
Q Consensus 45 ~~~~~p~~~vP~L~ 58 (126)
+++..-.|++|+++
T Consensus 179 w~~lg~~g~lP~~l 192 (200)
T TIGR03759 179 WLQLGLQGQLPAVV 192 (200)
T ss_pred HHHccCCCCCCEEE
Confidence 34333356788774
No 208
>PRK13949 shikimate kinase; Provisional
Probab=25.98 E-value=1.1e+02 Score=20.18 Aligned_cols=29 Identities=17% Similarity=0.158 Sum_probs=25.3
Q ss_pred Ce-eEEecCCCCchHHHHHHHHHHhCCCce
Q psy2059 1 MT-IDFYYVPGSAPCRAVQLAAAQIGVPLN 29 (126)
Q Consensus 1 M~-~~Ly~~~~s~~~~~v~~~l~~~gi~~~ 29 (126)
|. +.|.+.++++-+--.+++.+..|+++-
T Consensus 1 m~~I~liG~~GsGKstl~~~La~~l~~~~i 30 (169)
T PRK13949 1 MARIFLVGYMGAGKTTLGKALARELGLSFI 30 (169)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcCCCee
Confidence 54 889999999999999999999998763
No 209
>cd03004 PDI_a_ERdj5_C PDIa family, C-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is composed of the three TRX domains located at the C-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation. Also included in the alignment is the single complete TRX domain of an uncharacterized protein from Tetraodon nigroviridis, which also contains a DnaJ domain at its N-terminus.
Probab=25.58 E-value=1.5e+02 Score=17.31 Aligned_cols=52 Identities=13% Similarity=0.214 Sum_probs=30.1
Q ss_pred eEEecCCCCchHHHHHHHHH----HhCCCceEEEccCCCCCCCChhHhhhCCCCccceee
Q psy2059 3 IDFYYVPGSAPCRAVQLAAA----QIGVPLNLKHTDLMKGEHLTPEFLKLNPQHTVPYSQ 58 (126)
Q Consensus 3 ~~Ly~~~~s~~~~~v~~~l~----~~gi~~~~~~v~~~~~~~~~~~~~~~~p~~~vP~L~ 58 (126)
+..|+.+.|+.|++..-.++ ..+-.+....+|.. ..++..+...-..+|++.
T Consensus 23 ~v~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~vd~~----~~~~~~~~~~i~~~Pt~~ 78 (104)
T cd03004 23 LVDFYAPWCGPCQALLPELRKAARALKGKVKVGSVDCQ----KYESLCQQANIRAYPTIR 78 (104)
T ss_pred EEEEECCCCHHHHHHHHHHHHHHHHhcCCcEEEEEECC----chHHHHHHcCCCcccEEE
Confidence 45677888999986643333 22223455556554 234554445566789773
No 210
>COG3384 Aromatic ring-opening dioxygenase, catalytic LigB subunit related enzyme [Amino acid transport and metabolism]
Probab=25.25 E-value=1.8e+02 Score=21.38 Aligned_cols=38 Identities=11% Similarity=0.064 Sum_probs=25.9
Q ss_pred hHhhhCCCCccceeeeecCCCeeeechHHHHHHHHHHh
Q psy2059 44 EFLKLNPQHTVPYSQQTNSQEYRREESRAIIAYLAEQY 81 (126)
Q Consensus 44 ~~~~~~p~~~vP~L~~~~~~~~~l~eS~aI~~yL~~~~ 81 (126)
-++.++|...+||+|-+.+.......+..+-+-|.+.-
T Consensus 123 pL~~M~PdadipVV~iSi~~~~~~~~h~~lG~al~~lr 160 (268)
T COG3384 123 PLRYMFPDADIPVVQISIDCTLSPADHYELGRALRKLR 160 (268)
T ss_pred eehhhCCccCCcEEEEecCCCCCHHHHHHHHHHHHHHH
Confidence 34689999999999744444445666666666666543
No 211
>KOG0190|consensus
Probab=24.99 E-value=3e+02 Score=22.14 Aligned_cols=75 Identities=17% Similarity=0.309 Sum_probs=48.0
Q ss_pred eEEecCCCCchHH-------HHHHHHHHhCCCceEEEccCCCCCCCChhHhhhCCCCccceeeeecC--CCee------e
Q psy2059 3 IDFYYVPGSAPCR-------AVQLAAAQIGVPLNLKHTDLMKGEHLTPEFLKLNPQHTVPYSQQTNS--QEYR------R 67 (126)
Q Consensus 3 ~~Ly~~~~s~~~~-------~v~~~l~~~gi~~~~~~v~~~~~~~~~~~~~~~~p~~~vP~L~~~~~--~~~~------l 67 (126)
+.-|+.|.|+.|. ++--.|.+.|-+.....||-... .++....-..-.|+| .- +|.. .
T Consensus 46 lVeFYAPWCghck~LaPey~kAA~~Lke~~s~i~LakVDat~~----~~~~~~y~v~gyPTl---kiFrnG~~~~~Y~G~ 118 (493)
T KOG0190|consen 46 LVEFYAPWCGHCKALAPEYEKAATELKEEGSPVKLAKVDATEE----SDLASKYEVRGYPTL---KIFRNGRSAQDYNGP 118 (493)
T ss_pred EEEEEchhhhhhhhhCcHHHHHHHHhhccCCCceeEEeecchh----hhhHhhhcCCCCCeE---EEEecCCcceeccCc
Confidence 4567888888776 34455666666888888886542 233333334456766 42 3332 4
Q ss_pred echHHHHHHHHHHhCCC
Q psy2059 68 EESRAIIAYLAEQYGKD 84 (126)
Q Consensus 68 ~eS~aI~~yL~~~~~~~ 84 (126)
.+...|+.||-++.+..
T Consensus 119 r~adgIv~wl~kq~gPa 135 (493)
T KOG0190|consen 119 READGIVKWLKKQSGPA 135 (493)
T ss_pred ccHHHHHHHHHhccCCC
Confidence 57889999999987654
No 212
>cd02997 PDI_a_PDIR PDIa family, PDIR subfamily; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related). PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity.
Probab=24.66 E-value=1.1e+02 Score=17.71 Aligned_cols=54 Identities=17% Similarity=0.205 Sum_probs=29.7
Q ss_pred eEEecCCCCchHHHHH----HHHHHhC--CCceEEEccCCCCCCCChhHhhhCCCCccceee
Q psy2059 3 IDFYYVPGSAPCRAVQ----LAAAQIG--VPLNLKHTDLMKGEHLTPEFLKLNPQHTVPYSQ 58 (126)
Q Consensus 3 ~~Ly~~~~s~~~~~v~----~~l~~~g--i~~~~~~v~~~~~~~~~~~~~~~~p~~~vP~L~ 58 (126)
+.+|+.+.|+.|+... -+.+..+ -.+....+|... ...+.+.+...-..+|+++
T Consensus 21 ~v~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~--~~~~~~~~~~~i~~~Pt~~ 80 (104)
T cd02997 21 LVMFYAPWCGHCKKMKPEFTKAATELKEDGKGVLAAVDCTK--PEHDALKEEYNVKGFPTFK 80 (104)
T ss_pred EEEEECCCCHHHHHhCHHHHHHHHHHhhCCceEEEEEECCC--CccHHHHHhCCCccccEEE
Confidence 4577788899998663 2222222 234444455432 1245555555556789884
No 213
>PRK08227 autoinducer 2 aldolase; Validated
Probab=24.32 E-value=2.2e+02 Score=20.72 Aligned_cols=56 Identities=16% Similarity=0.241 Sum_probs=36.1
Q ss_pred HHHHHHHHhCCCceEEEccCCCCCCCChhHhhhCCCCccceeeeecCCCeeeechHHHHHHHHHHhCC
Q psy2059 16 AVQLAAAQIGVPLNLKHTDLMKGEHLTPEFLKLNPQHTVPYSQQTNSQEYRREESRAIIAYLAEQYGK 83 (126)
Q Consensus 16 ~v~~~l~~~gi~~~~~~v~~~~~~~~~~~~~~~~p~~~vP~L~~~~~~~~~l~eS~aI~~yL~~~~~~ 83 (126)
.+|++ .|+|.++ +.+++. .+.|.+.--.+.+|++ ..+|... +...+++.+.+....
T Consensus 163 aaRia-aELGADi--VK~~y~-----~~~f~~vv~a~~vPVv---iaGG~k~-~~~~~L~~v~~ai~a 218 (264)
T PRK08227 163 ATRIA-AEMGAQI--IKTYYV-----EEGFERITAGCPVPIV---IAGGKKL-PERDALEMCYQAIDE 218 (264)
T ss_pred HHHHH-HHHcCCE--EecCCC-----HHHHHHHHHcCCCcEE---EeCCCCC-CHHHHHHHHHHHHHc
Confidence 44544 5677766 344443 1567666557889999 8888877 446677777765543
No 214
>PRK09301 circadian clock protein KaiB; Provisional
Probab=24.03 E-value=1.9e+02 Score=17.98 Aligned_cols=51 Identities=14% Similarity=0.199 Sum_probs=34.3
Q ss_pred eEEecCCCCchHHHH----HHHHH-HhCCCceEEEccCCCCCCCChhHhhhCCCCcccee
Q psy2059 3 IDFYYVPGSAPCRAV----QLAAA-QIGVPLNLKHTDLMKGEHLTPEFLKLNPQHTVPYS 57 (126)
Q Consensus 3 ~~Ly~~~~s~~~~~v----~~~l~-~~gi~~~~~~v~~~~~~~~~~~~~~~~p~~~vP~L 57 (126)
++||....+|.++++ +-+|+ +.+=.|+...+|... .|+.......--.|+|
T Consensus 9 LrLyVag~tp~S~~ai~nL~~icE~~l~g~y~LeVIDv~~----qPelAE~~~IvATPTL 64 (103)
T PRK09301 9 LKLYVAGNTPNSVRALKTLKNILETEFKGVYALKVIDVLK----NPQLAEEDKILATPTL 64 (103)
T ss_pred EEEEEeCCCchHHHHHHHHHHHHHHhcCCceEEEEEEccc----CHhHHhHCCeEEecHH
Confidence 689998888888754 23333 445569999999874 4555555555567777
No 215
>PHA00159 endonuclease I
Probab=23.79 E-value=2.3e+02 Score=18.77 Aligned_cols=66 Identities=20% Similarity=0.281 Sum_probs=47.1
Q ss_pred CchHHHHHHHHHHhCCCceEEEccCC-----CCCCCChhHhhhCCCCccceeeeecCCCeeeechHHHHHHHHHHhCC
Q psy2059 11 SAPCRAVQLAAAQIGVPLNLKHTDLM-----KGEHLTPEFLKLNPQHTVPYSQQTNSQEYRREESRAIIAYLAEQYGK 83 (126)
Q Consensus 11 s~~~~~v~~~l~~~gi~~~~~~v~~~-----~~~~~~~~~~~~~p~~~vP~L~~~~~~~~~l~eS~aI~~yL~~~~~~ 83 (126)
|..=.++--.|+.+|++|+.....+. ......|+|. -|.|.+ + +.-|....|-..=+.-+.++||.
T Consensus 17 SgLE~k~ak~Le~~gv~~~yE~~ki~y~~pA~~~~YTPDF~--LpnGii--i---EvKG~w~~ddR~K~lli~eQ~P~ 87 (148)
T PHA00159 17 SGLEDKVSKQLEKKGVKFDYELWKIPYVIPASDHKYTPDFL--LPNGII--I---ETKGLWDSDDRKKHLLIREQYPE 87 (148)
T ss_pred chHHHHHHHHHHhcCCCeEeeeeeeeeeccCCCCeeCCcee--cCCCCE--E---EecccCChHHHHHHHHHHHHCCC
Confidence 55556788889999998876554432 3345578887 566776 5 77888877777777778888875
No 216
>PHA02278 thioredoxin-like protein
Probab=23.76 E-value=1.8e+02 Score=17.61 Aligned_cols=63 Identities=10% Similarity=0.037 Sum_probs=34.0
Q ss_pred eEEecCCCCchHHHHHHHHHHh----CCCceEEEccCCCCCCCChhHhhhCCCCccceeeeec-CCCeee
Q psy2059 3 IDFYYVPGSAPCRAVQLAAAQI----GVPLNLKHTDLMKGEHLTPEFLKLNPQHTVPYSQQTN-SQEYRR 67 (126)
Q Consensus 3 ~~Ly~~~~s~~~~~v~~~l~~~----gi~~~~~~v~~~~~~~~~~~~~~~~p~~~vP~L~~~~-~~~~~l 67 (126)
+.-|+.+.|+.|+...=.++.. +...+...++........++.....--..+|++. . .+|..+
T Consensus 18 vV~F~A~WCgpCk~m~p~l~~l~~~~~~~~~~~~vdvd~~~~d~~~l~~~~~I~~iPT~i--~fk~G~~v 85 (103)
T PHA02278 18 IVMITQDNCGKCEILKSVIPMFQESGDIKKPILTLNLDAEDVDREKAVKLFDIMSTPVLI--GYKDGQLV 85 (103)
T ss_pred EEEEECCCCHHHHhHHHHHHHHHhhhcCCceEEEEECCccccccHHHHHHCCCccccEEE--EEECCEEE
Confidence 3456778899999665444332 2233455555543211124554555566789883 2 356544
No 217
>PF09098 Dehyd-heme_bind: Quinohemoprotein amine dehydrogenase A, alpha subunit, haem binding; InterPro: IPR015182 Quinohemoprotein amine dehydrogenases (QHNDH) 1.4.99 from EC) are enzymes produced in the periplasmic space of certain Gram-negative bacteria, such as Paracoccus denitrificans and Pseudomonas putida, in response to primary amines, including n-butylamine and benzylamine. QHNDH catalyses the oxidative deamination of a wide range of aliphatic and aromatic amines through formation of a Schiff-base intermediate involving one of the quinone O atoms []. Catalysis requires the presence of a novel redox cofactor, cysteine tryptophylquinone (CTQ). CTQ is derived from the post-translational modification of specific residues, which involves the oxidation of the indole ring of a tryptophan residue to form tryptophylquinone, followed by covalent cross-linking with a cysteine residue []. There is one CTQ per subunit in QHNDH. In addition to CTQ, two haem c cofactors are present in QHNDH that mediate the transfer of the substrate-derived electrons from CTQ to an external electron acceptor, cytochrome c-550 [, ]. QHNDH is a heterotrimer of alpha, beta and gamma subunits. The alpha and beta subunits contain signal peptides necessary for the translocation of QHNDH to the periplasm. The alpha subunit is composed of four domains - domain 1 forming a dihaem cytochrome, and domains 2-4 forming antiparallel beta-barrel structures; the beta subunit is a 7-bladed beta-propeller that provides part of the active site; and the small, catalytic gamma subunit contains the novel cross-linked CTQ cofactor, in addition to additional thioester cross-links between Cys and Asp/Glu residues that encage CTQ. The gamma subunit assumes a globular secondary structure with two short alpha-helices having many turns and bends []. This entry represents the dihaem cytochrome c domain of the QHNDH alpha subunit. The domain contain two cysteine residues that are involved in thioether linkages to haem []. ; PDB: 1PBY_A 1JJU_A 1JMZ_A 1JMX_A.
Probab=23.72 E-value=60 Score=21.96 Aligned_cols=20 Identities=35% Similarity=0.590 Sum_probs=12.3
Q ss_pred CCeeee--chHHHHHHHHHHhC
Q psy2059 63 QEYRRE--ESRAIIAYLAEQYG 82 (126)
Q Consensus 63 ~~~~l~--eS~aI~~yL~~~~~ 82 (126)
.|..|+ |-.+|++||++.+|
T Consensus 47 hGl~Is~eer~avVkYLAd~~G 68 (167)
T PF09098_consen 47 HGLPISPEERRAVVKYLADTQG 68 (167)
T ss_dssp C-----HHHHHHHHHHHHHHT-
T ss_pred cCCCCCHHHHHHHHHHHHHccC
Confidence 444555 66899999999987
No 218
>COG0041 PurE Phosphoribosylcarboxyaminoimidazole (NCAIR) mutase [Nucleotide transport and metabolism]
Probab=23.57 E-value=1.5e+02 Score=19.89 Aligned_cols=25 Identities=12% Similarity=0.281 Sum_probs=19.8
Q ss_pred hHHHHHHHHHHhCCCceEEEccCCC
Q psy2059 13 PCRAVQLAAAQIGVPLNLKHTDLMK 37 (126)
Q Consensus 13 ~~~~v~~~l~~~gi~~~~~~v~~~~ 37 (126)
...++.-+|++.|++|+.+.+.-.+
T Consensus 17 ~mk~Aa~~L~~fgi~ye~~VvSAHR 41 (162)
T COG0041 17 TMKKAAEILEEFGVPYEVRVVSAHR 41 (162)
T ss_pred HHHHHHHHHHHcCCCeEEEEEeccC
Confidence 3456778899999999999887543
No 219
>PRK06217 hypothetical protein; Validated
Probab=23.48 E-value=1.3e+02 Score=19.93 Aligned_cols=28 Identities=21% Similarity=0.251 Sum_probs=24.6
Q ss_pred Ce-eEEecCCCCchHHHHHHHHHHhCCCc
Q psy2059 1 MT-IDFYYVPGSAPCRAVQLAAAQIGVPL 28 (126)
Q Consensus 1 M~-~~Ly~~~~s~~~~~v~~~l~~~gi~~ 28 (126)
|+ +.+.|.++|+-+-.++.+.+..|+++
T Consensus 1 ~~~I~i~G~~GsGKSTla~~L~~~l~~~~ 29 (183)
T PRK06217 1 MMRIHITGASGSGTTTLGAALAERLDIPH 29 (183)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHcCCcE
Confidence 55 88999999999999999999999875
No 220
>TIGR02654 circ_KaiB circadian clock protein KaiB. Members of this protein family are the circadian clock protein KaiB of Cyanobacteria, encoded in the circadian clock gene cluster kaiABC. KaiB has homologs of unknown function in some Archaea and Proteobacteria, and has paralogs of unknown function in some Cyanobacteria. KaiB forms homodimers, homotetramers, and multimeric complexes with KaiA and/or KaiC.
Probab=23.21 E-value=1.8e+02 Score=17.45 Aligned_cols=51 Identities=14% Similarity=0.200 Sum_probs=33.4
Q ss_pred eEEecCCCCchHHHH----HHHHH-HhCCCceEEEccCCCCCCCChhHhhhCCCCcccee
Q psy2059 3 IDFYYVPGSAPCRAV----QLAAA-QIGVPLNLKHTDLMKGEHLTPEFLKLNPQHTVPYS 57 (126)
Q Consensus 3 ~~Ly~~~~s~~~~~v----~~~l~-~~gi~~~~~~v~~~~~~~~~~~~~~~~p~~~vP~L 57 (126)
++||....+|.++++ +-+++ +.+=.|+...+|... .|+.......--.|+|
T Consensus 6 LrLyvag~~p~S~~ai~nl~~i~e~~l~g~y~LeVIDv~~----qP~lAE~~~IvATPtL 61 (87)
T TIGR02654 6 LKLYVAGNTPNSVRALKTLKNILETEFQGVYALKVIDVLK----NPQLAEEDKILATPTL 61 (87)
T ss_pred EEEEEeCCCchHHHHHHHHHHHHHHhcCCceEEEEEEccc----CHhHHhHCCEEEecHH
Confidence 678888888887754 23333 444459999999874 4555554444556777
No 221
>TIGR03757 conj_TIGR03757 integrating conjugative element protein, PFL_4709 family. Members of this protein belong to extended genomic regions that appear to be spread by conjugative transfer.
Probab=23.21 E-value=93 Score=19.67 Aligned_cols=28 Identities=14% Similarity=0.074 Sum_probs=21.7
Q ss_pred CCCccceeeeecCCCeeeechHHHHHHHHH
Q psy2059 50 PQHTVPYSQQTNSQEYRREESRAIIAYLAE 79 (126)
Q Consensus 50 p~~~vP~L~~~~~~~~~l~eS~aI~~yL~~ 79 (126)
...|+|+++ .|+..+++....+.+-+..
T Consensus 81 Gi~k~PAVV--~D~~~VVYG~~DV~~A~~~ 108 (113)
T TIGR03757 81 GVTKIPAVV--VDRRYVVYGETDVARALAL 108 (113)
T ss_pred CCccCCEEE--EcCCeEEecCccHHHHHHH
Confidence 355899997 7888899988888776654
No 222
>PRK04182 cytidylate kinase; Provisional
Probab=23.12 E-value=1.4e+02 Score=19.26 Aligned_cols=28 Identities=29% Similarity=0.402 Sum_probs=24.0
Q ss_pred CeeEEecCCCCchHHHHHHHHHHhCCCc
Q psy2059 1 MTIDFYYVPGSAPCRAVQLAAAQIGVPL 28 (126)
Q Consensus 1 M~~~Ly~~~~s~~~~~v~~~l~~~gi~~ 28 (126)
|-+.+.+.++|+-+-..+.+.+..|+++
T Consensus 1 ~~I~i~G~~GsGKstia~~la~~lg~~~ 28 (180)
T PRK04182 1 MIITISGPPGSGKTTVARLLAEKLGLKH 28 (180)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHcCCcE
Confidence 5578899999999888999988888876
No 223
>KOG2263|consensus
Probab=23.00 E-value=2.2e+02 Score=23.14 Aligned_cols=86 Identities=17% Similarity=0.118 Sum_probs=56.2
Q ss_pred HhCCC-ceEEEccCCCCCCCChhHhhhCCCCccceeeeecCCCeeee-----chHHHHHHHHHHhCCCC-------CCCC
Q psy2059 23 QIGVP-LNLKHTDLMKGEHLTPEFLKLNPQHTVPYSQQTNSQEYRRE-----ESRAIIAYLAEQYGKDD-------SLYP 89 (126)
Q Consensus 23 ~~gi~-~~~~~v~~~~~~~~~~~~~~~~p~~~vP~L~~~~~~~~~l~-----eS~aI~~yL~~~~~~~~-------~l~p 89 (126)
.+|++ +.-..+|+-++...-+..++..|.|++=..- +-||..|| -|.+|++-+....+.+. +|+-
T Consensus 256 lk~L~~v~~~~~D~VR~~e~lD~~~a~~~~~k~l~~G--vVdGRNIW~nDf~~s~a~l~k~~~~vG~dkvvVstS~SlLH 333 (765)
T KOG2263|consen 256 LKSLKGVTAFGFDLVRGPETLDLVKAGFPEGKYLFAG--VVDGRNIWANDFAASLATLQKLEGIVGKDKVVVSTSCSLLH 333 (765)
T ss_pred HhCCcceeeeeeeeeechhhHHHHHhcCCCCceEEEE--EeccchhhhhhHHHHHHHHHHHHHhhccceEEEeechhhhc
Confidence 45565 5556666666555556667888999865443 55777665 58899999999887652 1221
Q ss_pred ------CCHHHHHHHHHHHhhhccccc
Q psy2059 90 ------KDPKARGIVNQRLYFDIGTLY 110 (126)
Q Consensus 90 ------~~~~~~~~~~~wl~~~~~~~~ 110 (126)
....--+++..|+.|+...+.
T Consensus 334 t~vdL~nE~kld~EiK~w~aFA~qK~~ 360 (765)
T KOG2263|consen 334 TAVDLINETKLDAEIKSWLAFAAQKVV 360 (765)
T ss_pred cchhhccccccCHHHHHHHHHHHHHHH
Confidence 112335778899999877654
No 224
>COG0703 AroK Shikimate kinase [Amino acid transport and metabolism]
Probab=22.74 E-value=1.4e+02 Score=20.31 Aligned_cols=29 Identities=17% Similarity=0.197 Sum_probs=26.0
Q ss_pred CeeEEecCCCCchHHHHHHHHHHhCCCce
Q psy2059 1 MTIDFYYVPGSAPCRAVQLAAAQIGVPLN 29 (126)
Q Consensus 1 M~~~Ly~~~~s~~~~~v~~~l~~~gi~~~ 29 (126)
|++.|.+..+++-+-.-+.+++.+|++|-
T Consensus 3 ~~IvLiG~mGaGKSTIGr~LAk~L~~~F~ 31 (172)
T COG0703 3 MNIVLIGFMGAGKSTIGRALAKALNLPFI 31 (172)
T ss_pred ccEEEEcCCCCCHhHHHHHHHHHcCCCcc
Confidence 35889999999999999999999999983
No 225
>PRK07849 4-amino-4-deoxychorismate lyase; Provisional
Probab=22.56 E-value=84 Score=22.90 Aligned_cols=58 Identities=9% Similarity=-0.071 Sum_probs=37.2
Q ss_pred HHHHhCCCceEEEccCCCCCCCChhHhhhCCCCccceeeeecCCCeeeechHHHHHHHHHHh
Q psy2059 20 AAAQIGVPLNLKHTDLMKGEHLTPEFLKLNPQHTVPYSQQTNSQEYRREESRAIIAYLAEQY 81 (126)
Q Consensus 20 ~l~~~gi~~~~~~v~~~~~~~~~~~~~~~~p~~~vP~L~~~~~~~~~l~eS~aI~~yL~~~~ 81 (126)
.++..|++++...+.+..-....+-|+-.+..|-+|+. .-||..+.. ..+.+-|.+.|
T Consensus 227 ~~~~~g~~v~er~i~~~eL~~Adevfltns~~gi~pV~---~id~~~~~~-~~~~~~l~~~~ 284 (292)
T PRK07849 227 VAREKGWDCEYRALRPADLFAADGVWLVSSVRLAARVH---TLDGRPLPR-DPLADELTELV 284 (292)
T ss_pred HHHHcCCceEEEECCHHHHhhCCEEEEecCcceEEEEE---EECCEECCC-ChHHHHHHHHH
Confidence 45677999999888765433344555655667889999 556655543 35555555444
No 226
>TIGR02173 cyt_kin_arch cytidylate kinase, putative. Proteins in this family are believed to be cytidylate kinase. Members of this family are found in the archaea and in spirochaetes, and differ considerably from the common bacterial form of cytidylate kinase described by TIGR00017.
Probab=22.47 E-value=1.5e+02 Score=19.00 Aligned_cols=28 Identities=25% Similarity=0.385 Sum_probs=23.6
Q ss_pred CeeEEecCCCCchHHHHHHHHHHhCCCc
Q psy2059 1 MTIDFYYVPGSAPCRAVQLAAAQIGVPL 28 (126)
Q Consensus 1 M~~~Ly~~~~s~~~~~v~~~l~~~gi~~ 28 (126)
|-+.+.+.++|+-+..++.+.+..|+++
T Consensus 1 ~iI~i~G~~GSGKstia~~la~~lg~~~ 28 (171)
T TIGR02173 1 MIITISGPPGSGKTTVAKILAEKLSLKL 28 (171)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHcCCce
Confidence 5578999999998888888888888775
No 227
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=22.30 E-value=1.6e+02 Score=21.17 Aligned_cols=29 Identities=24% Similarity=0.490 Sum_probs=24.5
Q ss_pred eEEecCCCCchHHHHHHHHHHhCCCceEE
Q psy2059 3 IDFYYVPGSAPCRAVQLAAAQIGVPLNLK 31 (126)
Q Consensus 3 ~~Ly~~~~s~~~~~v~~~l~~~gi~~~~~ 31 (126)
+-||+-|+++-+--+++++++.|.++...
T Consensus 53 ~lf~GPPG~GKTTLA~IIA~e~~~~~~~~ 81 (233)
T PF05496_consen 53 MLFYGPPGLGKTTLARIIANELGVNFKIT 81 (233)
T ss_dssp EEEESSTTSSHHHHHHHHHHHCT--EEEE
T ss_pred EEEECCCccchhHHHHHHHhccCCCeEec
Confidence 78999999999999999999999998654
No 228
>cd08535 SAM_PNT-Tel_Yan Sterile alpha motif (SAM)/Pointed domain of Tel/Yan protein. SAM Pointed domain of Tel (Translocation, Ets, Leukemia)/Yan subfamily of ETS transcriptional repressors is a protein-protein interaction domain. SAM Pointed domains of this type of regulators can interact with each other, forming head-to-tail homodimers or homooligomers, and/or interact with SAM Pointed domains of another subfamily of ETS factors forming heterodimers. The oligomeric form is able to block transcription of target genesand is involved in MAPK signaling. They participate in regulation of different processes during embryo development including hematopoietic differentiation and eye development. Tel/Yan transcriptional factors are frequent targets of chromosomal translocations resulting in fusions of SAM domain with new neighboring genes. Such chimeric proteins were found in different tumors. Members of this subfamily are potential targets for cancer therapy.
Probab=22.22 E-value=65 Score=18.30 Aligned_cols=17 Identities=24% Similarity=0.136 Sum_probs=13.8
Q ss_pred HHHHHHHHHhhhccccc
Q psy2059 94 ARGIVNQRLYFDIGTLY 110 (126)
Q Consensus 94 ~~~~~~~wl~~~~~~~~ 110 (126)
.+.+|.+|+.|+...+.
T Consensus 7 t~~~V~~WL~wa~~ef~ 23 (68)
T cd08535 7 SRDDVLQWLRWAENEFS 23 (68)
T ss_pred CHHHHHHHHHHHHHhcC
Confidence 36789999999887765
No 229
>PRK03731 aroL shikimate kinase II; Reviewed
Probab=22.18 E-value=1.5e+02 Score=19.21 Aligned_cols=26 Identities=12% Similarity=0.068 Sum_probs=23.3
Q ss_pred eEEecCCCCchHHHHHHHHHHhCCCc
Q psy2059 3 IDFYYVPGSAPCRAVQLAAAQIGVPL 28 (126)
Q Consensus 3 ~~Ly~~~~s~~~~~v~~~l~~~gi~~ 28 (126)
+.|.+.++|+-+-..+.+.+..|.++
T Consensus 5 i~~~G~~GsGKst~~~~la~~lg~~~ 30 (171)
T PRK03731 5 LFLVGARGCGKTTVGMALAQALGYRF 30 (171)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCCE
Confidence 77889999999999999999999887
No 230
>KOG0730|consensus
Probab=21.27 E-value=98 Score=25.79 Aligned_cols=29 Identities=17% Similarity=0.210 Sum_probs=26.1
Q ss_pred eEEecCCCCchHHHHHHHHHHhCCCceEE
Q psy2059 3 IDFYYVPGSAPCRAVQLAAAQIGVPLNLK 31 (126)
Q Consensus 3 ~~Ly~~~~s~~~~~v~~~l~~~gi~~~~~ 31 (126)
+-||+-|+|.-+..++.++++.+++|-.+
T Consensus 471 VLlyGPPGC~KT~lAkalAne~~~nFlsv 499 (693)
T KOG0730|consen 471 VLLYGPPGCGKTLLAKALANEAGMNFLSV 499 (693)
T ss_pred EEEECCCCcchHHHHHHHhhhhcCCeeec
Confidence 56999999999999999999999999554
No 231
>PRK12400 D-amino acid aminotransferase; Reviewed
Probab=21.22 E-value=92 Score=22.60 Aligned_cols=57 Identities=11% Similarity=0.117 Sum_probs=34.4
Q ss_pred HHHHhCCCceEEEccCCCCCCCChhHhhhCCCCccceeeeecCCCeeeec--hHHHHHHHHH
Q psy2059 20 AAAQIGVPLNLKHTDLMKGEHLTPEFLKLNPQHTVPYSQQTNSQEYRREE--SRAIIAYLAE 79 (126)
Q Consensus 20 ~l~~~gi~~~~~~v~~~~~~~~~~~~~~~~p~~~vP~L~~~~~~~~~l~e--S~aI~~yL~~ 79 (126)
.++..|++++...+.+..-....+-|+--+-.+-+|+- .-|+..+.+ ...+.+.|.+
T Consensus 218 la~~~gi~v~E~~i~~~eL~~Adevfltns~~gv~PV~---~i~~~~~~~~~~g~~t~~l~~ 276 (290)
T PRK12400 218 LAKTLRIPVQEELFSVRDVYQADECFFTGTTIEILPMT---HLDGTAIQDGQVGPITKMLQR 276 (290)
T ss_pred HHHHcCCcEEEEeCCHHHHHhCCeeeEccCcceEEEEE---EECCEECCCCCcCHHHHHHHH
Confidence 56778999999888764323334555555557889998 545554432 2344444443
No 232
>PRK09381 trxA thioredoxin; Provisional
Probab=21.21 E-value=1.9e+02 Score=17.02 Aligned_cols=52 Identities=10% Similarity=0.168 Sum_probs=30.6
Q ss_pred eEEecCCCCchHHHHHHHHH----HhCCCceEEEccCCCCCCCChhHhhhCCCCccceee
Q psy2059 3 IDFYYVPGSAPCRAVQLAAA----QIGVPLNLKHTDLMKGEHLTPEFLKLNPQHTVPYSQ 58 (126)
Q Consensus 3 ~~Ly~~~~s~~~~~v~~~l~----~~gi~~~~~~v~~~~~~~~~~~~~~~~p~~~vP~L~ 58 (126)
+..++.+.|+.|+...-.++ ..+-.+....++... .+...+...-..+|+++
T Consensus 25 vv~f~~~~C~~C~~~~p~~~~l~~~~~~~~~~~~vd~~~----~~~~~~~~~v~~~Pt~~ 80 (109)
T PRK09381 25 LVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQ----NPGTAPKYGIRGIPTLL 80 (109)
T ss_pred EEEEECCCCHHHHHHhHHHHHHHHHhCCCcEEEEEECCC----ChhHHHhCCCCcCCEEE
Confidence 34667788998986643332 333345666666653 33444444566799874
No 233
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=20.83 E-value=2.1e+02 Score=17.69 Aligned_cols=33 Identities=18% Similarity=0.179 Sum_probs=27.6
Q ss_pred eEEecCCCCchHHHHHHHHHHhCCCceEEEccC
Q psy2059 3 IDFYYVPGSAPCRAVQLAAAQIGVPLNLKHTDL 35 (126)
Q Consensus 3 ~~Ly~~~~s~~~~~v~~~l~~~gi~~~~~~v~~ 35 (126)
+-|++.++++-+.-++.+++..+.++..+.+..
T Consensus 2 vlL~G~~G~GKt~l~~~la~~~~~~~~~i~~~~ 34 (139)
T PF07728_consen 2 VLLVGPPGTGKTTLARELAALLGRPVIRINCSS 34 (139)
T ss_dssp EEEEESSSSSHHHHHHHHHHHHTCEEEEEE-TT
T ss_pred EEEECCCCCCHHHHHHHHHHHhhcceEEEEecc
Confidence 568999999999999999999988887766654
No 234
>cd01558 D-AAT_like D-Alanine aminotransferase (D-AAT_like): D-amino acid aminotransferase catalyzes transamination between D-amino acids and their respective alpha-keto acids. It plays a major role in the synthesis of bacterial cell wall components like D-alanine and D-glutamate in addition to other D-amino acids. The enzyme like other members of this superfamily requires PLP as a cofactor. Members of this subgroup are found in all three forms of life.
Probab=20.76 E-value=65 Score=22.94 Aligned_cols=44 Identities=16% Similarity=0.214 Sum_probs=28.3
Q ss_pred HHHHhCCCceEEEccCCCCCCCChhHhhhCCCCccceeeeecCCCee
Q psy2059 20 AAAQIGVPLNLKHTDLMKGEHLTPEFLKLNPQHTVPYSQQTNSQEYR 66 (126)
Q Consensus 20 ~l~~~gi~~~~~~v~~~~~~~~~~~~~~~~p~~~vP~L~~~~~~~~~ 66 (126)
.++..|++++...+....-....+-|+--+..|-+|+- .-++..
T Consensus 210 ~a~~~g~~v~e~~i~~~eL~~ade~fl~ns~~gv~PV~---~i~~~~ 253 (270)
T cd01558 210 LAKELGIPVEERPFSLEELYTADEVFLTSTTAEVMPVV---EIDGRP 253 (270)
T ss_pred HHHHcCCeEEEEeCCHHHHhhCCEEEEecCcccEEEEE---EECCeE
Confidence 45677999988887654322334455555567889998 445543
No 235
>COG3150 Predicted esterase [General function prediction only]
Probab=20.62 E-value=1.8e+02 Score=20.06 Aligned_cols=33 Identities=9% Similarity=-0.159 Sum_probs=26.3
Q ss_pred EEecCCCCchHHHHHHHHHHhCCCceEEEccCC
Q psy2059 4 DFYYVPGSAPCRAVQLAAAQIGVPLNLKHTDLM 36 (126)
Q Consensus 4 ~Ly~~~~s~~~~~v~~~l~~~gi~~~~~~v~~~ 36 (126)
=|+++..||.+.|..+.++..+-.+..+.+...
T Consensus 4 YlHGFnSSP~shka~l~~q~~~~~~~~i~y~~p 36 (191)
T COG3150 4 YLHGFNSSPGSHKAVLLLQFIDEDVRDIEYSTP 36 (191)
T ss_pred EEecCCCCcccHHHHHHHHHHhccccceeeecC
Confidence 478899999999999999998877766555443
No 236
>COG0462 PrsA Phosphoribosylpyrophosphate synthetase [Nucleotide transport and metabolism / Amino acid transport and metabolism]
Probab=20.54 E-value=2.5e+02 Score=21.14 Aligned_cols=69 Identities=9% Similarity=0.010 Sum_probs=40.5
Q ss_pred cCCCCchHHHHHHHHHHhCCCceEEEccCC-CCCCCChhHhhhCCCCccceeeeec-CCCeeeechHHHHH
Q psy2059 7 YVPGSAPCRAVQLAAAQIGVPLNLKHTDLM-KGEHLTPEFLKLNPQHTVPYSQQTN-SQEYRREESRAIIA 75 (126)
Q Consensus 7 ~~~~s~~~~~v~~~l~~~gi~~~~~~v~~~-~~~~~~~~~~~~~p~~~vP~L~~~~-~~~~~l~eS~aI~~ 75 (126)
-+|..+-..++|.+++.+|.++....-.-. ......-...-.+-.||-.+|+||. +.|..+.+..-+++
T Consensus 168 VSPD~Ggv~RAr~~A~~L~~~~a~i~K~R~~~~~~v~~~~~~gdV~gk~~iiVDDiIdTgGTi~~Aa~~Lk 238 (314)
T COG0462 168 VSPDKGGVKRARALADRLGAPLAIIDKRRDSSPNVVEVMNLIGDVEGKDVVIVDDIIDTGGTIAKAAKALK 238 (314)
T ss_pred ECCCccHHHHHHHHHHHhCCCEEEEEEeecCCCCeEEEeecccccCCCEEEEEeccccccHHHHHHHHHHH
Confidence 456667788999999999999754332211 1111111112334578889996554 34666666655544
No 237
>TIGR02739 TraF type-F conjugative transfer system pilin assembly protein TraF. This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold and has been shown to be localized to the periplasm. Unlike the related protein TrbB (TIGR02738), TraF does not contain a conserved pair of cysteines and has been shown not to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. Even more closely related than TrbB is a clade of genes (TIGR02740) which do contain the CXXC motif, but it is unclear whether these genes are involved in type-F conjugation systems per se.
Probab=20.28 E-value=1.9e+02 Score=20.96 Aligned_cols=33 Identities=21% Similarity=0.256 Sum_probs=24.5
Q ss_pred eEEecCCCCchHH----HHHHHHHHhCCCceEEEccC
Q psy2059 3 IDFYYVPGSAPCR----AVQLAAAQIGVPLNLKHTDL 35 (126)
Q Consensus 3 ~~Ly~~~~s~~~~----~v~~~l~~~gi~~~~~~v~~ 35 (126)
+.+++...|++|. .++.+.+..|+++..+.+|-
T Consensus 154 L~fFy~~~C~~C~~~apil~~fa~~ygi~v~~VS~DG 190 (256)
T TIGR02739 154 LFFFYRGKSPISQKMAPVIQAFAKEYGISVIPISVDG 190 (256)
T ss_pred EEEEECCCCchhHHHHHHHHHHHHHhCCeEEEEecCC
Confidence 4566778899998 45667788998887777664
No 238
>PRK08118 topology modulation protein; Reviewed
Probab=20.17 E-value=1.8e+02 Score=19.15 Aligned_cols=28 Identities=18% Similarity=0.278 Sum_probs=24.7
Q ss_pred Ce-eEEecCCCCchHHHHHHHHHHhCCCc
Q psy2059 1 MT-IDFYYVPGSAPCRAVQLAAAQIGVPL 28 (126)
Q Consensus 1 M~-~~Ly~~~~s~~~~~v~~~l~~~gi~~ 28 (126)
|+ +.+.|.++|+-+--++.+.+..|+++
T Consensus 1 m~rI~I~G~~GsGKSTlak~L~~~l~~~~ 29 (167)
T PRK08118 1 MKKIILIGSGGSGKSTLARQLGEKLNIPV 29 (167)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhCCCc
Confidence 54 78899999999999999999999985
Done!