RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy2059
(126 letters)
>gnl|CDD|239343 cd03045, GST_N_Delta_Epsilon, GST_N family, Class Delta and
Epsilon subfamily; GSTs are cytosolic dimeric proteins
involved in cellular detoxification by catalyzing the
conjugation of glutathione (GSH) with a wide range of
endogenous and xenobiotic alkylating agents, including
carcinogens, therapeutic drugs, environmental toxins
and products of oxidative stress. GSTs also show GSH
peroxidase activity and are involved in the synthesis
of prostaglandins and leukotrienes. The GST fold
contains an N-terminal TRX-fold domain and a C-terminal
alpha helical domain, with an active site located in a
cleft between the two domains. The class Delta and
Epsilon subfamily is made up primarily of insect GSTs,
which play major roles in insecticide resistance by
facilitating reductive dehydrochlorination of
insecticides or conjugating them with GSH to produce
water-soluble metabolites that are easily excreted.
They are also implicated in protection against cellular
damage by oxidative stress.
Length = 74
Score = 103 bits (259), Expect = 2e-30
Identities = 46/77 (59%), Positives = 52/77 (67%), Gaps = 3/77 (3%)
Query: 3 IDFYYVPGSAPCRAVQLAAAQIGVPLNLKHTDLMKGEHLTPEFLKLNPQHTVPYSQQTNS 62
ID YY+PGS PCRAV L A +G+ LNLK +LMKGEHL PEFLKLNPQHTVP
Sbjct: 1 IDLYYLPGSPPCRAVLLTAKALGLELNLKEVNLMKGEHLKPEFLKLNPQHTVP---TLVD 57
Query: 63 QEYRREESRAIIAYLAE 79
+ ES AI+ YL E
Sbjct: 58 NGFVLWESHAILIYLVE 74
>gnl|CDD|239348 cd03050, GST_N_Theta, GST_N family, Class Theta subfamily;
composed of eukaryotic class Theta GSTs and bacterial
dichloromethane (DCM) dehalogenase. GSTs are cytosolic
dimeric proteins involved in cellular detoxification by
catalyzing the conjugation of glutathione (GSH) with a
wide range of endogenous and xenobiotic alkylating
agents, including carcinogens, therapeutic drugs,
environmental toxins and products of oxidative stress.
The GST fold contains an N-terminal TRX-fold domain and
a C-terminal alpha helical domain, with an active site
located in a cleft between the two domains. Mammalian
class Theta GSTs show poor GSH conjugating activity
towards the standard substrates, CDNB and ethacrynic
acid, differentiating them from other mammalian GSTs.
GSTT1-1 shows similar cataytic activity as bacterial
DCM dehalogenase, catalyzing the GSH-dependent
hydrolytic dehalogenation of dihalomethanes. This is an
essential process in methylotrophic bacteria to enable
them to use chloromethane and DCM as sole carbon and
energy sources. The presence of polymorphisms in human
GSTT1-1 and its relationship to the onset of diseases
including cancer is subject of many studies. Human
GSTT2-2 exhibits a highly specific sulfatase activity,
catalyzing the cleavage of sulfate ions from aralkyl
sufate esters, but not from aryl or alkyl sulfate
esters.
Length = 76
Score = 63.0 bits (154), Expect = 2e-14
Identities = 30/79 (37%), Positives = 39/79 (49%), Gaps = 3/79 (3%)
Query: 3 IDFYYVPGSAPCRAVQLAAAQIGVPLNLKHTDLMKGEHLTPEFLKLNPQHTVPYSQQTNS 62
+ YY S P RAV + +P DL KGE LTPEF K+NP VP
Sbjct: 1 LKLYYDLMSQPSRAVYIFLKLNKIPFEECPIDLRKGEQLTPEFKKINPFGKVPAIVD--- 57
Query: 63 QEYRREESRAIIAYLAEQY 81
++ ES AI+ YLA ++
Sbjct: 58 GDFTLAESVAILRYLARKF 76
>gnl|CDD|239346 cd03048, GST_N_Ure2p_like, GST_N family, Ure2p-like subfamily;
composed of the Saccharomyces cerevisiae Ure2p and
related GSTs. Ure2p is a regulator for nitrogen
catabolism in yeast. It represses the expression of
several gene products involved in the use of poor
nitrogen sources when rich sources are available. A
transmissible conformational change of Ure2p results in
a prion called [Ure3], an inactive, self-propagating
and infectious amyloid. Ure2p displays a GST fold
containing an N-terminal TRX-fold domain and a
C-terminal alpha helical domain, with an active site
located in a cleft between the two domains. The
N-terminal TRX-fold domain is sufficient to induce the
[Ure3] phenotype and is also called the prion domain of
Ure2p. In addition to its role in nitrogen regulation,
Ure2p confers protection to cells against heavy metal
ion and oxidant toxicity, and shows glutathione (GSH)
peroxidase activity. Characterized GSTs in this
subfamily include Aspergillus fumigatus GSTs 1 and 2,
and Schizosaccharomyces pombe GST-I. GSTs are cytosolic
dimeric proteins involved in cellular detoxification by
catalyzing the conjugation of GSH with a wide range of
endogenous and xenobiotic alkylating agents, including
carcinogens, therapeutic drugs, environmental toxins
and products of oxidative stress. GSTs also show GSH
peroxidase activity and are involved in the synthesis
of prostaglandins and leukotrienes.
Length = 81
Score = 59.1 bits (144), Expect = 6e-13
Identities = 28/81 (34%), Positives = 38/81 (46%), Gaps = 1/81 (1%)
Query: 3 IDFYYVPGSAPCRAVQLAAAQIGVPLNLKHTDLMKGEHLTPEFLKLNPQHTVPYSQQTNS 62
I Y V + ++G+P + D+ KGE PEFLK+NP +P N
Sbjct: 2 ITLYTHGTPNG-FKVSIMLEELGLPYEIHPVDISKGEQKKPEFLKINPNGRIPAIVDHNG 60
Query: 63 QEYRREESRAIIAYLAEQYGK 83
ES AI+ YLAE+Y K
Sbjct: 61 TPLTVFESGAILLYLAEKYDK 81
>gnl|CDD|223698 COG0625, Gst, Glutathione S-transferase [Posttranslational
modification, protein turnover, chaperones].
Length = 211
Score = 60.2 bits (146), Expect = 3e-12
Identities = 37/103 (35%), Positives = 50/103 (48%), Gaps = 7/103 (6%)
Query: 5 FYYVPGSAPCRAVQLAAAQIGVPLNLKHTDLMKGEHLTPEFLKLNPQHTVPYSQQTNSQE 64
Y P S R V+LA + G+P + DL E P+FL LNP VP + +
Sbjct: 3 LYGSPTSPYSRKVRLALEEKGLPYEIVLVDLDA-EQKPPDFLALNPLGKVPALVDDDGEV 61
Query: 65 YRREESRAIIAYLAEQYGKDDSLYPKDP---KARGIVNQRLYF 104
ES AI+ YLAE+Y L P DP +AR ++ L+F
Sbjct: 62 LT--ESGAILEYLAERYP-GPPLLPADPLARRARALLLWWLFF 101
>gnl|CDD|238319 cd00570, GST_N_family, Glutathione S-transferase (GST) family,
N-terminal domain; a large, diverse group of cytosolic
dimeric proteins involved in cellular detoxification by
catalyzing the conjugation of glutathione (GSH) with a
wide range of endogenous and xenobiotic alkylating
agents, including carcinogens, therapeutic drugs,
environmental toxins and products of oxidative stress.
In addition, GSTs also show GSH peroxidase activity and
are involved in the synthesis of prostaglandins and
leukotrienes. This family, also referred to as soluble
GSTs, is the largest family of GSH transferases and is
only distantly related to the mitochondrial GSTs (GSTK
subfamily, a member of the DsbA family). Soluble GSTs
bear no structural similarity to microsomal GSTs (MAPEG
family) and display additional activities unique to
their group, such as catalyzing thiolysis, reduction
and isomerization of certain compounds. The GST fold
contains an N-terminal TRX-fold domain and a C-terminal
alpha helical domain, with an active site located in a
cleft between the two domains. Based on sequence
similarity, different classes of GSTs have been
identified, which display varying tissue distribution,
substrate specificities and additional specific
activities. In humans, GSTs display polymorphisms which
may influence individual susceptibility to diseases
such as cancer, arthritis, allergy and sclerosis. Some
GST family members with non-GST functions include
glutaredoxin 2, the CLIC subfamily of anion channels,
prion protein Ure2p, crystallins, metaxin 2 and
stringent starvation protein A.
Length = 71
Score = 55.3 bits (134), Expect = 2e-11
Identities = 30/81 (37%), Positives = 36/81 (44%), Gaps = 15/81 (18%)
Query: 3 IDFYYVPGSAPCRAVQLAAAQIGVPLNLKHTDLMKGEHLTPEFLKLNPQHTVPYSQQTNS 62
+ YY PGS V+LA + G+P L DL +GE EFL LNP VP
Sbjct: 1 LKLYYFPGSPRSLRVRLALEEKGLPYELVPVDLGEGEQE--EFLALNPLGKVPV------ 52
Query: 63 QEYRRE-----ESRAIIAYLA 78
ES AI+ YLA
Sbjct: 53 --LEDGGLVLTESLAILEYLA 71
>gnl|CDD|239354 cd03056, GST_N_4, GST_N family, unknown subfamily 4; composed of
uncharacterized bacterial proteins with similarity to
GSTs. GSTs are cytosolic dimeric proteins involved in
cellular detoxification by catalyzing the conjugation
of glutathione (GSH) with a wide range of endogenous
and xenobiotic alkylating agents, including
carcinogens, therapeutic drugs, environmental toxins
and products of oxidative stress. GSTs also show GSH
peroxidase activity and are involved in the synthesis
of prostaglandins and leukotrienes. The GST fold
contains an N-terminal TRX-fold domain and a C-terminal
alpha helical domain, with an active site located in a
cleft between the two domains.
Length = 73
Score = 54.9 bits (133), Expect = 3e-11
Identities = 29/70 (41%), Positives = 36/70 (51%), Gaps = 3/70 (4%)
Query: 9 PGSAPCRAVQLAAAQIGVPLNLKHTDLMKGEHLTPEFLKLNPQHTVPYSQQTNSQEYRRE 68
P S C V+L A +G+P D++KGE TPEFL LNP VP +
Sbjct: 7 PLSGNCYKVRLLLALLGIPYEWVEVDILKGETRTPEFLALNPNGEVPVLEL---DGRVLA 63
Query: 69 ESRAIIAYLA 78
ES AI+ YLA
Sbjct: 64 ESNAILVYLA 73
>gnl|CDD|239351 cd03053, GST_N_Phi, GST_N family, Class Phi subfamily; composed
of plant-specific class Phi GSTs and related fungal and
bacterial proteins. GSTs are cytosolic dimeric proteins
involved in cellular detoxification by catalyzing the
conjugation of glutathione (GSH) with a wide range of
endogenous and xenobiotic alkylating agents, including
carcinogens, therapeutic drugs, environmental toxins
and products of oxidative stress. The GST fold contains
an N-terminal TRX-fold domain and a C-terminal alpha
helical domain, with an active site located in a cleft
between the two domains. The class Phi GST subfamily
has experience extensive gene duplication. The
Arabidopsis and Oryza genomes contain 13 and 16 Phi
GSTs, respectively. They are primarily responsible for
herbicide detoxification together with class Tau GSTs,
showing class specificity in substrate preference. Phi
enzymes are highly reactive toward chloroacetanilide
and thiocarbamate herbicides. Some Phi GSTs have other
functions including transport of flavonoid pigments to
the vacuole, shoot regeneration and GSH peroxidase
activity.
Length = 76
Score = 55.0 bits (133), Expect = 3e-11
Identities = 29/75 (38%), Positives = 36/75 (48%), Gaps = 3/75 (4%)
Query: 6 YYVPGSAPCRAVQLAAAQIGVPLNLKHTDLMKGEHLTPEFLKLNPQHTVPYSQQTNSQEY 65
Y S R V L + GV L DL KGEH +PE L NP +P + +
Sbjct: 5 YGAAMSTCVRRVLLCLEEKGVDYELVPVDLTKGEHKSPEHLARNPFGQIPALED---GDL 61
Query: 66 RREESRAIIAYLAEQ 80
+ ESRAI YLAE+
Sbjct: 62 KLFESRAITRYLAEK 76
>gnl|CDD|166036 PLN02395, PLN02395, glutathione S-transferase.
Length = 215
Score = 57.6 bits (139), Expect = 4e-11
Identities = 38/99 (38%), Positives = 47/99 (47%), Gaps = 8/99 (8%)
Query: 7 YVPGSAPCRAVQLAAAQIGVPLNLKHTDLMKGEHLTPEFLKLNPQHTVPYSQQTNSQEYR 66
Y P A + + + GV DLMKGEH PE+L L P VP +Y+
Sbjct: 6 YGPAFASPKRALVTLIEKGVEFETVPVDLMKGEHKQPEYLALQPFGVVPVIVDG---DYK 62
Query: 67 REESRAIIAYLAEQY---GKDDSLYPKDPKARGIVNQRL 102
ESRAI+ Y AE+Y G D L K + RG V Q L
Sbjct: 63 IFESRAIMRYYAEKYRSQGPD--LLGKTIEERGQVEQWL 99
>gnl|CDD|198287 cd03177, GST_C_Delta_Epsilon, C-terminal, alpha helical domain of
Class Delta and Epsilon Glutathione S-transferases.
Glutathione S-transferase (GST) C-terminal domain
family, Class Delta and Epsilon subfamily; GSTs are
cytosolic dimeric proteins involved in cellular
detoxification by catalyzing the conjugation of
glutathione (GSH) with a wide range of endogenous and
xenobiotic alkylating agents, including carcinogens,
therapeutic drugs, environmental toxins and products of
oxidative stress. GSTs also show GSH peroxidase activity
and are involved in the synthesis of prostaglandins and
leukotrienes. The GST fold contains an N-terminal
thioredoxin-fold domain and a C-terminal alpha helical
domain, with an active site located in a cleft between
the two domains. GSH binds to the N-terminal domain
while the hydrophobic substrate occupies a pocket in the
C-terminal domain. The class Delta and Epsilon subfamily
is made up primarily of insect GSTs, which play major
roles in insecticide resistance by facilitating
reductive dehydrochlorination of insecticides or
conjugating them with GSH to produce water-soluble
metabolites that are easily excreted. They are also
implicated in protection against cellular damage by
oxidative stress.
Length = 117
Score = 53.3 bits (129), Expect = 3e-10
Identities = 20/30 (66%), Positives = 22/30 (73%)
Query: 93 KARGIVNQRLYFDIGTLYQRFADYFVSTLF 122
K R IVNQRL+FD GTLYQR DY+ LF
Sbjct: 1 KKRAIVNQRLFFDSGTLYQRLRDYYYPILF 30
>gnl|CDD|233333 TIGR01262, maiA, maleylacetoacetate isomerase.
Maleylacetoacetate isomerase is an enzyme of tyrosine
and phenylalanine catabolism. It requires glutathione
and belongs by homology to the zeta family of
glutathione S-transferases. The enzyme (EC 5.2.1.2) is
described as active also on maleylpyruvate, and the
example from a Ralstonia sp. catabolic plasmid is
described as a maleylpyruvate isomerase involved in
gentisate catabolism [Energy metabolism, Amino acids
and amines].
Length = 210
Score = 52.7 bits (127), Expect = 2e-09
Identities = 33/76 (43%), Positives = 37/76 (48%), Gaps = 14/76 (18%)
Query: 26 VPLNLKHTDLMKGEHLTPEFLKLNPQHTVP---YSQQTNSQEYRREESRAIIAYLAEQYG 82
VP+NL L GE +PEFL LNPQ VP + +Q S AII YL E Y
Sbjct: 28 VPVNL----LRDGEQRSPEFLALNPQGLVPTLDIDGEVLTQ------SLAIIEYLEETY- 76
Query: 83 KDDSLYPKDPKARGIV 98
D L P DP R V
Sbjct: 77 PDPPLLPADPIKRARV 92
>gnl|CDD|239355 cd03057, GST_N_Beta, GST_N family, Class Beta subfamily; GSTs are
cytosolic dimeric proteins involved in cellular
detoxification by catalyzing the conjugation of
glutathione (GSH) with a wide range of endogenous and
xenobiotic alkylating agents, including carcinogens,
therapeutic drugs, environmental toxins and products of
oxidative stress. The GST fold contains an N-terminal
TRX-fold domain and a C-terminal alpha helical domain,
with an active site located in a cleft between the two
domains. Unlike mammalian GSTs which detoxify a broad
range of compounds, the bacterial class Beta GSTs
exhibit limited GSH conjugating activity with a narrow
range of substrates. In addition to GSH conjugation,
they also bind antibiotics and reduce the antimicrobial
activity of beta-lactam drugs. The structure of the
Proteus mirabilis enzyme reveals that the cysteine in
the active site forms a covalent bond with GSH.
Length = 77
Score = 47.1 bits (113), Expect = 2e-08
Identities = 23/77 (29%), Positives = 37/77 (48%), Gaps = 3/77 (3%)
Query: 5 FYYVPGSAPCRAVQLAAAQIGVPLNLKHTDLMKGEHLTPEFLKLNPQHTVPYSQQTNSQE 64
YY PG+ A +A ++G+P L DL ++L +NP+ VP + +
Sbjct: 3 LYYSPGACS-LAPHIALEELGLPFELVRVDLRTKTQKGADYLAINPKGQVPALVLDDGE- 60
Query: 65 YRREESRAIIAYLAEQY 81
ES AI+ YLA+ +
Sbjct: 61 -VLTESAAILQYLADLH 76
>gnl|CDD|172475 PRK13972, PRK13972, GSH-dependent disulfide bond oxidoreductase;
Provisional.
Length = 215
Score = 46.6 bits (110), Expect = 4e-07
Identities = 31/111 (27%), Positives = 50/111 (45%), Gaps = 8/111 (7%)
Query: 3 IDFYYVPGSAPCRAVQLAAAQIGVPLNLKHTDLMKGEHLTPEFLKLNPQHTVP----YSQ 58
ID Y+ P + + L + + L DL KG PEFL+++P + +P +S
Sbjct: 2 IDLYFAP-TPNGHKITLFLEEAELDYRLIKVDLGKGGQFRPEFLRISPNNKIPAIVDHSP 60
Query: 59 QTNSQEYRREESRAIIAYLAEQYGKDDSLYPKDPKARGIVNQRLYFDIGTL 109
+ ES AI+ YLAE+ G + + R Q L++ +G L
Sbjct: 61 ADGGEPLSLFESGAILLYLAEKTG---LFLSHETRERAATLQWLFWQVGGL 108
>gnl|CDD|205595 pfam13417, GST_N_3, Glutathione S-transferase, N-terminal domain.
Length = 75
Score = 42.9 bits (102), Expect = 1e-06
Identities = 24/78 (30%), Positives = 31/78 (39%), Gaps = 6/78 (7%)
Query: 5 FYYVPGSAPCRAVQLAAAQIGVPLNLKHTDLMKGEHLTPEFLKLNPQHTVPYSQQTNSQE 64
Y P S R V+LA + G+P PE L LNP VP + +
Sbjct: 1 LYGSPTSPYARKVRLALREKGLPYEEVEVPPGDKP---PELLALNPLGKVPV-LVDDGEV 56
Query: 65 YRREESRAIIAYLAEQYG 82
+S AII YL E +
Sbjct: 57 LT--DSLAIIEYLEELFP 72
>gnl|CDD|239344 cd03046, GST_N_GTT1_like, GST_N family, Saccharomyces cerevisiae
GTT1-like subfamily; composed of predominantly
uncharacterized proteins with similarity to the S.
cerevisiae GST protein, GTT1, and the
Schizosaccharomyces pombe GST-III. GSTs are cytosolic
dimeric proteins involved in cellular detoxification by
catalyzing the conjugation of glutathione (GSH) with a
wide range of endogenous and xenobiotic alkylating
agents, including carcinogens, therapeutic drugs,
environmental toxins and products of oxidative stress.
GSTs also show GSH peroxidase activity and are involved
in the synthesis of prostaglandins and leukotrienes.
The GST fold contains an N-terminal TRX-fold domain and
a C-terminal alpha helical domain, with an active site
located in a cleft between the two domains. GTT1, a
homodimer, exhibits GST activity with standard
substrates and associates with the endoplasmic
reticulum. Its expression is induced after diauxic
shift and remains high throughout the stationary phase.
S. pombe GST-III is implicated in the detoxification of
various metals.
Length = 76
Score = 42.5 bits (101), Expect = 2e-06
Identities = 24/58 (41%), Positives = 29/58 (50%), Gaps = 3/58 (5%)
Query: 25 GVPLNLKHTDLMKGEHLTPEFLKLNPQHTVPYSQQTNSQEYRREESRAIIAYLAEQYG 82
G+P L D GE PE+L +NP VP + ES AII YLAE+YG
Sbjct: 22 GLPYELVLYDRGPGEQAPPEYLAINPLGKVPVLVD---GDLVLTESAAIILYLAEKYG 76
>gnl|CDD|185068 PRK15113, PRK15113, glutathione S-transferase; Provisional.
Length = 214
Score = 43.4 bits (103), Expect = 5e-06
Identities = 27/78 (34%), Positives = 36/78 (46%), Gaps = 5/78 (6%)
Query: 25 GVPLNLKHTDLMKGEHLTPEFLKLNPQHTVPYSQQTNSQEYRREESRAIIAYLAEQYGKD 84
G+P LK DL GEHL P + + VP Q + + ES AI YL E++
Sbjct: 30 GLPFELKTVDLDAGEHLQPTYQGYSLTRRVPTLQHDD---FELSESSAIAEYLEERFAPP 86
Query: 85 D--SLYPKDPKARGIVNQ 100
+YP D +AR Q
Sbjct: 87 AWERIYPADLQARARARQ 104
>gnl|CDD|239340 cd03042, GST_N_Zeta, GST_N family, Class Zeta subfamily; GSTs are
cytosolic dimeric proteins involved in cellular
detoxification by catalyzing the conjugation of
glutathione (GSH) with a wide range of endogenous and
xenobiotic alkylating agents, including carcinogens,
therapeutic drugs, environmental toxins and products of
oxidative stress. The GST fold contains an N-terminal
TRX-fold domain and a C-terminal alpha helical domain,
with an active site located in a cleft between the two
domains. Class Zeta GSTs, also known as
maleylacetoacetate (MAA) isomerases, catalyze the
isomerization of MAA to fumarylacetoacetate, the
penultimate step in tyrosine/phenylalanine catabolism,
using GSH as a cofactor. They show little
GSH-conjugating activity towards traditional GST
substrates but display modest GSH peroxidase activity.
They are also implicated in the detoxification of the
carcinogen dichloroacetic acid by catalyzing its
dechlorination to glyoxylic acid.
Length = 73
Score = 40.6 bits (96), Expect = 8e-06
Identities = 26/74 (35%), Positives = 34/74 (45%), Gaps = 10/74 (13%)
Query: 7 YVPGSAPCRAVQLAAAQIGVPLNLKHTDLMKGEHLTPEFLKLNPQHTVPY---SQQTNSQ 63
Y SA R V++A G+ +L+KGE L+P + LNPQ VP +Q
Sbjct: 6 YFRSSASYR-VRIALNLKGLDYEYVPVNLLKGEQLSPAYRALNPQGLVPTLVIDGLVLTQ 64
Query: 64 EYRREESRAIIAYL 77
S AII YL
Sbjct: 65 ------SLAIIEYL 72
>gnl|CDD|239342 cd03044, GST_N_EF1Bgamma, GST_N family, Gamma subunit of
Elongation Factor 1B (EFB1gamma) subfamily; EF1Bgamma
is part of the eukaryotic translation elongation
factor-1 (EF1) complex which plays a central role in
the elongation cycle during protein biosynthesis. EF1
consists of two functionally distinct units, EF1A and
EF1B. EF1A catalyzes the GTP-dependent binding of
aminoacyl-tRNA to the ribosomal A site concomitant with
the hydrolysis of GTP. The resulting inactive EF1A:GDP
complex is recycled to the active GTP form by the
guanine-nucleotide exchange factor EF1B, a complex
composed of at least two subunits, alpha and gamma.
Metazoan EFB1 contain a third subunit, beta. The EF1B
gamma subunit contains a GST fold consisting of an
N-terminal TRX-fold domain and a C-terminal alpha
helical domain. The GST-like domain of EF1Bgamma is
believed to mediate the dimerization of the EF1
complex, which in yeast is a dimer of the heterotrimer
EF1A:EF1Balpha:EF1Bgamma. In addition to its role in
protein biosynthesis, EF1Bgamma may also display other
functions. The recombinant rice protein has been shown
to possess GSH conjugating activity. The yeast
EF1Bgamma binds membranes in a calcium dependent manner
and is also part of a complex that binds to the msrA
(methionine sulfoxide reductase) promoter suggesting a
function in the regulation of its gene expression.
Length = 75
Score = 40.3 bits (95), Expect = 1e-05
Identities = 23/75 (30%), Positives = 33/75 (44%), Gaps = 3/75 (4%)
Query: 6 YYVPGSAPCRAVQLAAAQIGVPLNLKHTDLMKGEHLTPEFLKLNPQHTVPYSQQTNSQEY 65
Y PG+ + AA G+ + + K E+ TPEFLK P VP + + +
Sbjct: 4 YTYPGNPRSLKILAAAKYNGLDVEIVDFQPGK-ENKTPEFLKKFPLGKVPAFEGAD--GF 60
Query: 66 RREESRAIIAYLAEQ 80
ES AI Y+A
Sbjct: 61 CLFESNAIAYYVANL 75
>gnl|CDD|239349 cd03051, GST_N_GTT2_like, GST_N family, Saccharomyces cerevisiae
GTT2-like subfamily; composed of predominantly
uncharacterized proteins with similarity to the S.
cerevisiae GST protein, GTT2. GSTs are cytosolic
dimeric proteins involved in cellular detoxification by
catalyzing the conjugation of glutathione (GSH) with a
wide range of endogenous and xenobiotic alkylating
agents, including carcinogens, therapeutic drugs,
environmental toxins and products of oxidative stress.
GSTs also show GSH peroxidase activity and are involved
in the synthesis of prostaglandins and leukotrienes.
The GST fold contains an N-terminal TRX-fold domain and
a C-terminal alpha helical domain, with an active site
located in a cleft between the two domains. GTT2, a
homodimer, exhibits GST activity with standard
substrates. Strains with deleted GTT2 genes are viable
but exhibit increased sensitivity to heat shock.
Length = 74
Score = 40.0 bits (94), Expect = 2e-05
Identities = 21/50 (42%), Positives = 28/50 (56%), Gaps = 1/50 (2%)
Query: 7 YVPGSAPC-RAVQLAAAQIGVPLNLKHTDLMKGEHLTPEFLKLNPQHTVP 55
Y +AP R V++ A+ G+ + L DL GE +PEFL NP TVP
Sbjct: 4 YDSPTAPNPRRVRIFLAEKGIDVPLVTVDLAAGEQRSPEFLAKNPAGTVP 53
>gnl|CDD|217234 pfam02798, GST_N, Glutathione S-transferase, N-terminal domain.
Function: conjugation of reduced glutathione to a
variety of targets. Also included in the alignment, but
are not GSTs: * S-crystallins from squid. Similarity to
GST previously noted. * Eukaryotic elongation factors
1-gamma. Not known to have GST activity; similarity not
previously recognised. * HSP26 family of stress-related
proteins. including auxin-regulated proteins in plants
and stringent starvation proteins in E. coli. Not known
to have GST activity. Similarity not previously
recognised. The glutathione molecule binds in a cleft
between N and C-terminal domains - the catalytically
important residues are proposed to reside in the
N-terminal domain.
Length = 74
Score = 39.2 bits (92), Expect = 3e-05
Identities = 24/77 (31%), Positives = 30/77 (38%), Gaps = 5/77 (6%)
Query: 4 DFYYVPGSAPCRAVQLAAAQIGVPLNLKHTDLMKGEHLTPEFLKLNPQH-TVPYSQQTNS 62
G ++ A GV D GEH +PE+LKLNP VP +
Sbjct: 2 TLTLFNGRGRAERCRILLAAKGVEYEDVRVD-FSGEHKSPEWLKLNPLMGQVPALEDGGK 60
Query: 63 QEYRREESRAIIAYLAE 79
+ ES AI YLA
Sbjct: 61 KLT---ESLAIARYLAR 74
>gnl|CDD|222110 pfam13409, GST_N_2, Glutathione S-transferase, N-terminal domain.
This family is closely related to pfam02798.
Length = 68
Score = 37.2 bits (87), Expect = 2e-04
Identities = 20/67 (29%), Positives = 29/67 (43%), Gaps = 3/67 (4%)
Query: 14 CRAVQLAAAQIGVPLNLKHTDLMKGEHLTPEFLKLNPQHTVPYSQQTNSQEYRREESRAI 73
R V+LA G+P ++ + PE L LNP VP + + +S AI
Sbjct: 5 ARRVRLALELKGLPYEIEEVP-LDPWDKPPELLALNPLGKVPVLVLDDGEVIT--DSLAI 61
Query: 74 IAYLAEQ 80
+ YL E
Sbjct: 62 LEYLEEL 68
>gnl|CDD|183298 PRK11752, PRK11752, putative S-transferase; Provisional.
Length = 264
Score = 37.6 bits (88), Expect = 6e-04
Identities = 20/63 (31%), Positives = 34/63 (53%), Gaps = 4/63 (6%)
Query: 34 DLMKGEHLTPEFLKLNPQHTVP-YSQQTNSQEYRREESRAIIAYLAEQYGKDDSLYPKDP 92
+ +G+ + F+++NP +P ++ + R ES AI+ YLAE++G PKD
Sbjct: 81 RIGEGDQFSSGFVEINPNSKIPALLDRSGNPPIRVFESGAILLYLAEKFGA---FLPKDL 137
Query: 93 KAR 95
AR
Sbjct: 138 AAR 140
>gnl|CDD|166114 PLN02473, PLN02473, glutathione S-transferase.
Length = 214
Score = 33.8 bits (77), Expect = 0.012
Identities = 32/111 (28%), Positives = 49/111 (44%), Gaps = 6/111 (5%)
Query: 1 MTIDFYYVPGSAPCRAVQLAAAQIGVPLNLKHTDLMKGEHLTPEFLKLNPQHTVPYSQQT 60
M + Y +A + V L + G+ + H DL K E PE L P VP +
Sbjct: 1 MVVKVYGQIKAANPQRVLLCFLEKGIEFEVIHVDLDKLEQKKPEHLLRQPFGQVPAIEDG 60
Query: 61 NSQEYRREESRAIIAYLAEQYG-KDDSLYPKDPKARGIVNQRLYFDIGTLY 110
+ + + ESRAI Y A +Y + L K + R IV+Q + ++ Y
Sbjct: 61 DLKLF---ESRAIARYYATKYADQGTDLLGKTLEHRAIVDQ--WVEVENNY 106
>gnl|CDD|239345 cd03047, GST_N_2, GST_N family, unknown subfamily 2; composed of
uncharacterized bacterial proteins with similarity to
GSTs. GSTs are cytosolic dimeric proteins involved in
cellular detoxification by catalyzing the conjugation
of glutathione (GSH) with a wide range of endogenous
and xenobiotic alkylating agents, including
carcinogens, therapeutic drugs, environmental toxins
and products of oxidative stress. GSTs also show GSH
peroxidase activity and are involved in the synthesis
of prostaglandins and leukotrienes. The GST fold
contains an N-terminal TRX-fold domain and a C-terminal
alpha helical domain, with an active site located in a
cleft between the two domains. The sequence from
Burkholderia cepacia was identified as part of a gene
cluster involved in the degradation of
2,4,5-trichlorophenoxyacetic acid. Some GSTs (e.g.
Class Zeta and Delta) are known to catalyze
dechlorination reactions.
Length = 73
Score = 30.4 bits (69), Expect = 0.061
Identities = 16/37 (43%), Positives = 21/37 (56%), Gaps = 3/37 (8%)
Query: 42 TPEFLKLNPQHTVPYSQQTNSQEYRREESRAIIAYLA 78
TPEFL +NP VP + + + ES AI+ YLA
Sbjct: 40 TPEFLAMNPNGRVPVLEDGDFVLW---ESNAILRYLA 73
>gnl|CDD|236537 PRK09481, sspA, stringent starvation protein A; Provisional.
Length = 211
Score = 30.4 bits (69), Expect = 0.16
Identities = 26/87 (29%), Positives = 42/87 (48%), Gaps = 9/87 (10%)
Query: 17 VQLAAAQIGVPLNLKHTDLMKGEHLTPEFLKLNPQHTVPYSQQTNSQEYRREESRAIIAY 76
V++ A+ GV + ++ + ++L + + LNP +VP +E ESR I+ Y
Sbjct: 25 VRIVLAEKGVSVEIEQVEK---DNLPQDLIDLNPYQSVP---TLVDRELTLYESRIIMEY 78
Query: 77 LAEQYGKDDSLYPKDPKARGIVNQRLY 103
L E++ L P P ARG RL
Sbjct: 79 LDERF-PHPPLMPVYPVARG--ESRLM 102
>gnl|CDD|130176 TIGR01106, ATPase-IIC_X-K, sodium or proton efflux -- potassium
uptake antiporter, P-type ATPase, alpha subunit. This
model describes the P-type ATPases responsible for the
exchange of either protons or sodium ions for potassium
ions across the plasma membranes of eukaryotes. Unlike
most other P-type ATPases, members of this subfamily
require a beta subunit for activity. This model
encompasses eukaryotes and consists of two functional
types, a Na/K antiporter found widely distributed in
eukaryotes and a H/K antiporter found only in
vertebrates. The Na+ or H+/K+ antiporter P-type ATPases
have been characterized as Type IIC based on a published
phylogenetic analysis. Sequences from Blastocladiella
emersonii (GP|6636502, GP|6636502 and PIR|T43025), C.
elegans (GP|2315419, GP|6671808 and PIR|T31763) and
Drosophila melanogaster (GP|7291424) score below trusted
cutoff, apparently due to long branch length (excessive
divergence from the last common ancestor) as evidenced
by a phylogenetic tree. Experimental evidence is needed
to determine whether these sequences represent ATPases
with conserved function. Aside from fragments, other
sequences between trusted and noise appear to be
bacterial ATPases of unclear lineage, but most likely
calcium pumps [Energy metabolism, ATP-proton motive
force interconversion].
Length = 997
Score = 29.4 bits (66), Expect = 0.45
Identities = 16/41 (39%), Positives = 23/41 (56%), Gaps = 7/41 (17%)
Query: 89 PKDPKARGIVNQRL----YFDIGTLYQRFADYFVSTLFIIL 125
P++PK +VN+RL Y IG + Q +F T F+IL
Sbjct: 810 PRNPKTDKLVNERLISMAYGQIG-MIQALGGFF--TYFVIL 847
>gnl|CDD|237752 PRK14551, rnhB, ribonuclease HII; Provisional.
Length = 212
Score = 27.8 bits (62), Expect = 1.3
Identities = 11/22 (50%), Positives = 13/22 (59%)
Query: 74 IAYLAEQYGKDDSLYPKDPKAR 95
+A LA +YG S YP DP R
Sbjct: 152 VAALAAEYGDVGSGYPSDPTTR 173
>gnl|CDD|187693 cd07180, RNase_HII_Archaea_like, Archaeal ribonuclease HII.
Ribonuclease (RNase) H is classified into two families,
type I (prokaryotic RNase HI, eukaryotic RNase H1 and
viral RNase H) and type II (prokaryotic RNase HII and
HIII, archaeal RNase HII and eukaryotic RNase H2/HII).
RNase H endonucleolytically hydrolyzes an RNA strand
when it is annealed to a complementary DNA strand in the
presence of divalent cations, in DNA replication or
repair. Some archaeal RNase HII show broad divalent
cation specificity. It is proposed that three of the
four acidic residues at the active site are involved in
metal binding and the fourth one involved in the
catalytic process in archaea. Most archaeal genomes
contain multiple RNase H genes. Despite a lack of
evidence for homology from sequence comparisons, type I
and type II RNase H share a common fold and similar
steric configurations of the four acidic active-site
residues, suggesting identical or very similar catalytic
mechanisms. It appears that type I and type II RNases H
also have overlapping functions in cells, as
over-expression of Escherichia coli RNase HII can
complement an RNase HI deletion phenotype in E. coli.
Length = 204
Score = 27.6 bits (62), Expect = 1.8
Identities = 9/24 (37%), Positives = 12/24 (50%)
Query: 72 AIIAYLAEQYGKDDSLYPKDPKAR 95
I L ++YG S YP DP+
Sbjct: 153 REIEELKKEYGDFGSGYPSDPRTI 176
>gnl|CDD|166458 PLN02817, PLN02817, glutathione dehydrogenase (ascorbate).
Length = 265
Score = 27.3 bits (60), Expect = 2.0
Identities = 17/48 (35%), Positives = 25/48 (52%), Gaps = 6/48 (12%)
Query: 10 GSAP-CRAVQLAAAQIGVPLNLKHTDLMKGEHLTPE-FLKLNPQHTVP 55
G P C+ V L + +P ++K DL PE FLK++P+ VP
Sbjct: 71 GDCPFCQRVLLTLEEKHLPYDMKLVDLTN----KPEWFLKISPEGKVP 114
>gnl|CDD|239339 cd03041, GST_N_2GST_N, GST_N family, 2 repeats of the N-terminal
domain of soluble GSTs (2 GST_N) subfamily; composed of
uncharacterized proteins. GSTs are cytosolic dimeric
proteins involved in cellular detoxification by
catalyzing the conjugation of glutathione (GSH) with a
wide range of endogenous and xenobiotic alkylating
agents, including carcinogens, therapeutic drugs,
environmental toxins, and products of oxidative stress.
GSTs also show GSH peroxidase activity and are involved
in the synthesis of prostaglandins and leukotrienes.
The GST fold contains an N-terminal TRX-fold domain and
a C-terminal alpha helical domain, with an active site
located in a cleft between the two domains.
Length = 77
Score = 26.2 bits (58), Expect = 2.1
Identities = 23/83 (27%), Positives = 34/83 (40%), Gaps = 11/83 (13%)
Query: 3 IDFYYVPGSAPCRAVQLAAAQIGVPLNLKHT--DLMKGEHLTPEFLKLNPQHTVPY--SQ 58
++ Y GS CR V+ ++ L L KG +FL+ + VPY
Sbjct: 2 LELYEFEGSPFCRLVR----EVLTELELDVILYPCPKGSPKRDKFLEKGGKVQVPYLVDP 57
Query: 59 QTNSQEYRREESRAIIAYLAEQY 81
T Q + ES I+ YL + Y
Sbjct: 58 NTGVQMF---ESADIVKYLFKTY 77
>gnl|CDD|193452 pfam12979, DUF3863, Domain of Unknown Function with PDB structure
(DUF3863). Domain based on 1-364 domain of PDB:3LM3
which is encoded by the BDI_3119 gene from
Parabacteroides distasonis atcc 8503.
Length = 352
Score = 27.3 bits (60), Expect = 2.3
Identities = 16/52 (30%), Positives = 24/52 (46%), Gaps = 3/52 (5%)
Query: 41 LTPEFLKLNPQHTVPYSQQTNSQEYRREESRAIIAYLAE---QYGKDDSLYP 89
L F K NP + + N+ E R+ R I Y+ E +YG + S +P
Sbjct: 47 LREAFAKNNPNGRLTWGFTLNALEDGRKNYRQIRDYVVECQKKYGDEVSYFP 98
>gnl|CDD|235609 PRK05787, PRK05787, cobalt-precorrin-6Y C(5)-methyltransferase;
Validated.
Length = 210
Score = 27.1 bits (61), Expect = 2.5
Identities = 10/23 (43%), Positives = 16/23 (69%), Gaps = 5/23 (21%)
Query: 8 VPG-SAPCRAVQLAAAQIGVPLN 29
+PG S+ VQ AAA++G+ +N
Sbjct: 100 IPGISS----VQYAAARLGIDMN 118
>gnl|CDD|227709 COG5422, ROM1, RhoGEF, Guanine nucleotide exchange factor for
Rho/Rac/Cdc42-like GTPases [Signal transduction
mechanisms].
Length = 1175
Score = 27.2 bits (60), Expect = 2.6
Identities = 17/85 (20%), Positives = 28/85 (32%), Gaps = 10/85 (11%)
Query: 41 LTPEFLKLNPQHTVPYSQQTNSQEYRREESRAIIAYLAEQYGKDDSLYPKDPKARGIVNQ 100
L P + P++ + N Q Y I Y G+D L + + +
Sbjct: 787 LDPAYNTKPPKNAYGFELYGNGQRY------QITLYAETHAGRDTWLEHIKNQQDILRTR 840
Query: 101 RLYFDIGTLYQRFADYFVSTLFIIL 125
L+F + D F ST +
Sbjct: 841 TLWFTSFPI----CDQFFSTTNKVN 861
>gnl|CDD|233424 TIGR01466, cobJ_cbiH, precorrin-3B C17-methyltransferase. This
model represents precorrin-3B C17-methyltransferase, one
of two methyltransferases commonly referred to as
precorrin-3 methylase (the other is precorrin-4
C11-methyltransferase, EC 2.1.1.133). This enzyme
participates in the pathway toward the biosynthesis of
cobalamin and related products. Members of this family
may appear as fusion proteins with other enzymes of
cobalamin biosynthesis [Biosynthesis of cofactors,
prosthetic groups, and carriers, Heme, porphyrin, and
cobalamin].
Length = 239
Score = 26.5 bits (59), Expect = 3.6
Identities = 12/42 (28%), Positives = 18/42 (42%), Gaps = 3/42 (7%)
Query: 2 TIDFYYVPGSAPCRAVQLAAAQIGVPLNLKHTDLMKGEHLTP 43
+D +PG A AA+ +G PL + + LTP
Sbjct: 99 EVDIEVIPG---ITAASAAASLLGAPLGHDFCVISLSDLLTP 137
>gnl|CDD|235554 PRK05673, dnaE, DNA polymerase III subunit alpha; Validated.
Length = 1135
Score = 26.6 bits (60), Expect = 3.8
Identities = 10/19 (52%), Positives = 15/19 (78%), Gaps = 3/19 (15%)
Query: 66 RREESRAIIAYLAEQYGKD 84
RR+E +I Y+AE+YG+D
Sbjct: 407 RRDE---VIRYVAEKYGRD 422
>gnl|CDD|221060 pfam11287, DUF3088, Protein of unknown function (DUF3088). This
family of proteins with unknown function appears to be
restricted to Proteobacteria.
Length = 111
Score = 26.1 bits (58), Expect = 3.9
Identities = 20/83 (24%), Positives = 26/83 (31%), Gaps = 19/83 (22%)
Query: 2 TIDFYYVPGSAPCRAV--QLAAAQIGVPLNLKHTDLMKGEHLTPEFLKLNPQHTVPYSQQ 59
+D V P AV L +P+ L L P
Sbjct: 42 RLDVERVDFPRPRAAVVALLGEENQSLPV-----------------LVLADGDPAPDDAA 84
Query: 60 TNSQEYRREESRAIIAYLAEQYG 82
T + RAI+ YLAE+YG
Sbjct: 85 TAGGRRFITDPRAILRYLAERYG 107
>gnl|CDD|217703 pfam03737, Methyltransf_6, Demethylmenaquinone methyltransferase.
Members of this family are demethylmenaquinone
methyltransferases that convert dimethylmenaquinone
(DMK) to menaquinone (MK) in the final step of
menaquinone biosynthesis. This region is also found at
the C-terminus of the DlpA protein.
Length = 154
Score = 26.1 bits (58), Expect = 3.9
Identities = 8/32 (25%), Positives = 17/32 (53%)
Query: 10 GSAPCRAVQLAAAQIGVPLNLKHTDLMKGEHL 41
G+ PC AV+ ++ VP+ + G+++
Sbjct: 114 GTTPCAAVKTGIGEVNVPVTCGGVTVRPGDYI 145
>gnl|CDD|129812 TIGR00729, TIGR00729, ribonuclease H, mammalian HI/archaeal HII
subfamily. This enzyme cleaves RNA from DNA-RNA
hybrids. Archaeal members of this subfamily of RNase H
are designated RNase HII and one has been shown to be
active as a monomer. A member from Homo sapiens was
characterized as RNase HI, large subunit [DNA
metabolism, DNA replication, recombination, and repair].
Length = 206
Score = 26.3 bits (58), Expect = 4.1
Identities = 11/27 (40%), Positives = 13/27 (48%)
Query: 69 ESRAIIAYLAEQYGKDDSLYPKDPKAR 95
E I L +YG S YP DP+ R
Sbjct: 151 ERDREIESLKRKYGDFGSGYPSDPRTR 177
>gnl|CDD|239357 cd03059, GST_N_SspA, GST_N family, Stringent starvation protein A
(SspA) subfamily; SspA is a RNA polymerase
(RNAP)-associated protein required for the lytic
development of phage P1 and for stationary
phase-induced acid tolerance of E. coli. It is
implicated in survival during nutrient starvation. SspA
adopts the GST fold with an N-terminal TRX-fold domain
and a C-terminal alpha helical domain, but it does not
bind glutathione (GSH) and lacks GST activity. SspA is
highly conserved among gram-negative bacteria. Related
proteins found in Neisseria (called RegF), Francisella
and Vibrio regulate the expression of virulence factors
necessary for pathogenesis.
Length = 73
Score = 25.0 bits (55), Expect = 5.0
Identities = 19/68 (27%), Positives = 32/68 (47%), Gaps = 6/68 (8%)
Query: 14 CRAVQLAAAQIGVPLNLKHTDLMKGEHLTPEFLKLNPQHTVPYSQQTNSQEYRREESRAI 73
V++ A+ GV + + D ++ + +LNP TVP + Y ESR I
Sbjct: 12 SHRVRIVLAEKGVSVEIIDVDP---DNPPEDLAELNPYGTVPTLVDRDLVLY---ESRII 65
Query: 74 IAYLAEQY 81
+ YL E++
Sbjct: 66 MEYLDERF 73
>gnl|CDD|223660 COG0587, DnaE, DNA polymerase III, alpha subunit [DNA replication,
recombination, and repair].
Length = 1139
Score = 26.5 bits (59), Expect = 5.4
Identities = 10/19 (52%), Positives = 14/19 (73%), Gaps = 3/19 (15%)
Query: 66 RREESRAIIAYLAEQYGKD 84
RREE +I Y+ E+YG+D
Sbjct: 409 RREE---VIQYVYEKYGRD 424
>gnl|CDD|239350 cd03052, GST_N_GDAP1, GST_N family, Ganglioside-induced
differentiation-associated protein 1 (GDAP1) subfamily;
GDAP1 was originally identified as a highly expressed
gene at the differentiated stage of GD3
synthase-transfected cells. More recently, mutations in
GDAP1 have been reported to cause both axonal and
demyelinating autosomal-recessive Charcot-Marie-Tooth
(CMT) type 4A neuropathy. CMT is characterized by slow
and progressive weakness and atrophy of muscles.
Sequence analysis of GDAP1 shows similarities and
differences with GSTs; it appears to contain both
N-terminal TRX-fold and C-terminal alpha helical
domains of GSTs, however, it also contains additional
C-terminal transmembrane domains unlike GSTs. GDAP1 is
mainly expressed in neuronal cells and is localized in
the mitochondria through its transmembrane domains. It
does not exhibit GST activity using standard
substrates.
Length = 73
Score = 25.2 bits (55), Expect = 5.5
Identities = 14/39 (35%), Positives = 19/39 (48%)
Query: 17 VQLAAAQIGVPLNLKHTDLMKGEHLTPEFLKLNPQHTVP 55
V+L A+ G+ L EH P F++LNP VP
Sbjct: 15 VRLVIAEKGLRCEEYDVSLPLSEHNEPWFMRLNPTGEVP 53
>gnl|CDD|182838 PRK10919, PRK10919, ATP-dependent DNA helicase Rep; Provisional.
Length = 672
Score = 26.3 bits (58), Expect = 5.5
Identities = 15/51 (29%), Positives = 24/51 (47%)
Query: 35 LMKGEHLTPEFLKLNPQHTVPYSQQTNSQEYRREESRAIIAYLAEQYGKDD 85
L +G H + F K Q+ +PY + + R E + ++AYL DD
Sbjct: 348 LYRGNHQSRVFEKFLMQNRIPYKISGGTSFFSRPEIKDLLAYLRVLTNPDD 398
>gnl|CDD|143452 cd07134, ALDH_AlkH-like, Pseudomonas putida Aldehyde dehydrogenase
AlkH-like. Aldehyde dehydrogenase AlkH (locus name
P12693, EC=1.2.1.3) of the alkBFGHJKL operon that allows
Pseudomonas putida to metabolize alkanes and the
aldehyde dehydrogenase AldX of Bacillus subtilis (locus
P46329, EC=1.2.1.3), and similar sequences, are present
in this CD.
Length = 433
Score = 26.0 bits (58), Expect = 6.3
Identities = 11/30 (36%), Positives = 15/30 (50%), Gaps = 1/30 (3%)
Query: 72 AIIAYLAEQYGKDDSLYPKDPKARGIVNQR 101
+ A + + YGKD + AR IVN R
Sbjct: 259 HLKAEIEKFYGKDAARKASPDLAR-IVNDR 287
>gnl|CDD|225629 COG3087, FtsN, Cell division protein [Cell division and chromosome
partitioning].
Length = 264
Score = 26.0 bits (57), Expect = 6.9
Identities = 21/82 (25%), Positives = 27/82 (32%), Gaps = 5/82 (6%)
Query: 19 LAAAQIGVPLNLKHTDLMKGEHLTPE-----FLKLNPQHTVPYSQQTNSQEYRREESRAI 73
L QIGVP + + E LTPE Q P ++ R EE
Sbjct: 70 LEDRQIGVPQPTEPAAVKDAERLTPEQRQLLEQMEVDQKAQPTQLGEQPEQARIEEQPRT 129
Query: 74 IAYLAEQYGKDDSLYPKDPKAR 95
+ A+ P PK R
Sbjct: 130 QSQKAQSQATTVQTQPVKPKPR 151
>gnl|CDD|237227 PRK12846, PRK12846, peptide deformylase; Reviewed.
Length = 165
Score = 25.5 bits (57), Expect = 8.2
Identities = 15/37 (40%), Positives = 20/37 (54%), Gaps = 2/37 (5%)
Query: 15 RAVQLAAAQIGVPLNLKHTDLMKGEHLTPEFLKLNPQ 51
V LAA QIGV L + DL G+ P + +NP+
Sbjct: 44 DGVGLAAPQIGVSLRVVVIDL--GDDRVPPTVLINPE 78
>gnl|CDD|181320 PRK08247, PRK08247, cystathionine gamma-synthase; Reviewed.
Length = 366
Score = 25.4 bits (56), Expect = 8.7
Identities = 12/22 (54%), Positives = 15/22 (68%)
Query: 68 EESRAIIAYLAEQYGKDDSLYP 89
E ++AI A+L EQ G D LYP
Sbjct: 256 ENAKAIAAFLNEQPGVTDVLYP 277
>gnl|CDD|135648 PRK05898, dnaE, DNA polymerase III DnaE; Validated.
Length = 971
Score = 25.6 bits (56), Expect = 9.1
Identities = 13/41 (31%), Positives = 20/41 (48%), Gaps = 3/41 (7%)
Query: 48 LNPQHTVPYSQQTNSQEYRREESRAIIAYLAEQYGKDDSLY 88
LNP T+ + RR+E ++ YL E+YG D +
Sbjct: 325 LNPTRKSMPDIDTDIMDERRDE---VVEYLFEKYGNDHVAH 362
>gnl|CDD|188424 TIGR03909, pyrrolys_PylC, pyrrolysine biosynthesis protein PylC.
This protein is PylC, part of a three-gene cassette that
is sufficient to direct the biosynthesis of pyrrolysine,
the twenty-second amino acid, incorporated in some
species at a UAG canonical stop codon [Amino acid
biosynthesis, Other].
Length = 374
Score = 25.6 bits (56), Expect = 9.2
Identities = 12/52 (23%), Positives = 24/52 (46%), Gaps = 2/52 (3%)
Query: 75 AYLAEQYGKDDSLYPKDPKA--RGIVNQRLYFDIGTLYQRFADYFVSTLFII 124
AYL+++ G L ++ KA + ++ + FDI ++ + II
Sbjct: 15 AYLSKKAGWKVVLIDRNRKALIANMADEFICFDITEEPEKLVAISKNVDLII 66
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.322 0.138 0.406
Gapped
Lambda K H
0.267 0.0779 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 6,590,412
Number of extensions: 566644
Number of successful extensions: 657
Number of sequences better than 10.0: 1
Number of HSP's gapped: 634
Number of HSP's successfully gapped: 65
Length of query: 126
Length of database: 10,937,602
Length adjustment: 85
Effective length of query: 41
Effective length of database: 7,167,512
Effective search space: 293867992
Effective search space used: 293867992
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 53 (24.1 bits)