Query psy206
Match_columns 78
No_of_seqs 113 out of 588
Neff 5.0
Searched_HMMs 46136
Date Fri Aug 16 23:10:59 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy206.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/206hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3659|consensus 99.3 4.2E-13 9.1E-18 109.1 0.6 59 1-59 123-190 (629)
2 KOG3660|consensus 99.3 7.3E-13 1.6E-17 107.8 1.7 58 2-59 80-146 (629)
3 PF00209 SNF: Sodium:neurotran 98.8 8.8E-10 1.9E-14 86.4 -0.9 60 2-61 47-115 (523)
4 COG0733 Na+-dependent transpor 95.9 0.0057 1.2E-07 48.9 2.4 61 2-62 51-122 (439)
5 KOG3415|consensus 36.2 36 0.00077 23.4 2.3 19 38-56 107-125 (129)
6 PF07436 Curto_V3: Curtovirus 24.2 61 0.0013 20.8 1.7 28 46-73 3-30 (87)
7 PF11511 RhodobacterPufX: Intr 23.8 55 0.0012 20.2 1.4 32 25-58 16-47 (67)
8 PF10384 Scm3: Centromere prot 20.4 36 0.00077 20.2 0.1 7 71-77 45-51 (58)
9 PF03817 MadL: Malonate transp 19.5 77 0.0017 21.8 1.6 49 3-51 2-50 (125)
10 PF11346 DUF3149: Protein of u 19.1 12 0.00026 21.0 -2.0 33 35-74 9-41 (42)
No 1
>KOG3659|consensus
Probab=99.30 E-value=4.2e-13 Score=109.14 Aligned_cols=59 Identities=27% Similarity=0.576 Sum_probs=50.9
Q ss_pred CeeeechhHHHHHHHhhhccCCCccccc-eeccccccchhhhhHHHHH--------HHHHHHhhhHhh
Q psy206 1 MLVLAGKPMYFLELAVGQFGGVGPLGLW-NCCPIAKDGAISGVLYFIT--------PTWEKLLDIQAV 59 (78)
Q Consensus 1 ~L~l~GiPlf~LE~slGQ~~~~g~i~~w-~i~Pl~kGIGyAsivi~~i--------~~w~~~~~i~~~ 59 (78)
++++.|+|+++||+++|||.++|++++| |+||.++||||+++++++. .+|+..+-+.+.
T Consensus 123 mli~~GvPLfymELaLGQ~~r~g~~gvw~ri~P~l~Gigy~i~~i~~~~~~yyn~i~aWA~~yl~~sf 190 (629)
T KOG3659|consen 123 MLIVGGVPLFYMELALGQYHRQGCIGVWRRIAPALKGIGYAICLIAFFVGLYYNVIIAWALYYLFTSF 190 (629)
T ss_pred HHHHhccHHHHHHHHHHHHhcccchhHHHHhCHHhcCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3567899999999999999999999999 8999999999999998764 567766666543
No 2
>KOG3660|consensus
Probab=99.30 E-value=7.3e-13 Score=107.84 Aligned_cols=58 Identities=33% Similarity=0.745 Sum_probs=50.0
Q ss_pred eeeechhHHHHHHHhhhccCCCccccce-eccccccchhhhhHH--------HHHHHHHHHhhhHhh
Q psy206 2 LVLAGKPMYFLELAVGQFGGVGPLGLWN-CCPIAKDGAISGVLY--------FITPTWEKLLDIQAV 59 (78)
Q Consensus 2 L~l~GiPlf~LE~slGQ~~~~g~i~~w~-i~Pl~kGIGyAsivi--------~~i~~w~~~~~i~~~ 59 (78)
++++|+|+++||+++|||+++|++.+|| +||++||+|+|++++ +++++|++++-+.+.
T Consensus 80 l~l~GlP~~~LE~slGQf~~~g~v~~wrri~Pif~GvG~a~v~~~~~~~~Yy~viiaw~l~Yl~~sf 146 (629)
T KOG3660|consen 80 LFLFGLPLFFLEMSLGQFTSQGPVSVWRRICPIFKGVGWASVVISALLAIYYIVILAWALYYLFSSF 146 (629)
T ss_pred HHHhcchHHHHHHHHhhhhcCChHHHHHHhChHhcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 5679999999999999999999999995 999999999998886 456677777766554
No 3
>PF00209 SNF: Sodium:neurotransmitter symporter family; InterPro: IPR000175 Neurotransmitter transport systems are integral to the release, re-uptake and recycling of neurotransmitters at synapses. High affinity transport proteins found in the plasma membrane of presynaptic nerve terminals and glial cells are responsible for the removal from the extracellular space of released-transmitters, thereby terminating their actions []. Plasma membrane neurotransmitter transporters fall into two structurally and mechanistically distinct families. The majority of the transporters constitute an extensive family of homologous proteins that derive energy from the co-transport of Na+ and Cl-, in order to transport neurotransmitter molecules into the cell against their concentration gradient. The family has a common structure of 12 presumed transmembrane helices and includes carriers for gamma-aminobutyric acid (GABA), noradrenaline/adrenaline, dopamine, serotonin, proline, glycine, choline, betaine and taurine. They are structurally distinct from the second more-restricted family of plasma membrane transporters, which are responsible for excitatory amino acid transport. The latter couple glutamate and aspartate uptake to the cotransport of Na+ and the counter-transport of K+, with no apparent dependence on Cl- []. In addition, both of these transporter families are distinct from the vesicular neurotransmitter transporters [, ]. Sequence analysis of the Na+/Cl- neurotransmitter superfamily reveals that it can be divided into four subfamilies, these being transporters for monoamines, the amino acids proline and glycine, GABA, and a group of orphan transporters [].; GO: 0005328 neurotransmitter:sodium symporter activity, 0006836 neurotransmitter transport, 0016021 integral to membrane; PDB: 2QEI_A 3F3C_A 3USP_A 3USK_A 3TU0_A 3GWW_A 3TT3_A 3F4J_A 3USJ_B 3GJC_B ....
Probab=98.77 E-value=8.8e-10 Score=86.43 Aligned_cols=60 Identities=37% Similarity=0.703 Sum_probs=48.1
Q ss_pred eeeechhHHHHHHHhhhccCCCccccc-eeccccccchhhhhHH--------HHHHHHHHHhhhHhhcC
Q psy206 2 LVLAGKPMYFLELAVGQFGGVGPLGLW-NCCPIAKDGAISGVLY--------FITPTWEKLLDIQAVCP 61 (78)
Q Consensus 2 L~l~GiPlf~LE~slGQ~~~~g~i~~w-~i~Pl~kGIGyAsivi--------~~i~~w~~~~~i~~~~~ 61 (78)
+++.|+|++++|+++||++++|++++| |++|.+||+|+++++. +.+++|...+..+++-+
T Consensus 47 ~~~~giP~~~lE~~lGq~~~~~~~~~~~~~~p~~~giG~~~~~~~~~~~~yy~vi~~w~l~Y~~~s~~~ 115 (523)
T PF00209_consen 47 LLLVGIPLLYLELALGQYSRSGPIGAWKRLCPIFKGIGYAMVLISFLIAIYYSVIVAWALYYFFQSFTG 115 (523)
T ss_dssp HHHTHHHHHHHHHHHHHHHHTTSHHHS-HHHHHHHTHHHH---HHHHHHHHHHHHHHHHHHHHHH----
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 356899999999999999999999999 8999999999998764 56788999998887765
No 4
>COG0733 Na+-dependent transporters of the SNF family [General function prediction only]
Probab=95.87 E-value=0.0057 Score=48.94 Aligned_cols=61 Identities=23% Similarity=0.358 Sum_probs=48.8
Q ss_pred eeeechhHHHHHHHhhhccCCCccccc-eec--cccccchhhhhH--------HHHHHHHHHHhhhHhhcCc
Q psy206 2 LVLAGKPMYFLELAVGQFGGVGPLGLW-NCC--PIAKDGAISGVL--------YFITPTWEKLLDIQAVCPQ 62 (78)
Q Consensus 2 L~l~GiPlf~LE~slGQ~~~~g~i~~w-~i~--Pl~kGIGyAsiv--------i~~i~~w~~~~~i~~~~~~ 62 (78)
+++.|+|+...|+++|++.+++++.++ +.+ +.++.+|+-.++ ++.+.-|.+-+.+.++.+.
T Consensus 51 ~l~~GiPlli~Ef~iGr~~~~~~~~a~~~l~~~~~~~~~G~~gv~~~~~i~sfYsvI~GWil~Y~~~s~tg~ 122 (439)
T COG0733 51 LLLVGIPLLLAEFAIGRRGRKNAVGAFRKLAPKKKWEWIGWFGVLGGFLILSFYSVIGGWILSYLVKSLTGA 122 (439)
T ss_pred HHHHhHHHHHHHHHhhhhcCCChhHHHHHhccCccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 356899999999999999999999999 677 456667776333 4667789999988888754
No 5
>KOG3415|consensus
Probab=36.16 E-value=36 Score=23.38 Aligned_cols=19 Identities=11% Similarity=0.282 Sum_probs=15.9
Q ss_pred hhhhhHHHHHHHHHHHhhh
Q psy206 38 AISGVLYFITPTWEKLLDI 56 (78)
Q Consensus 38 GyAsivi~~i~~w~~~~~i 56 (78)
|+...+..|+++|+++++.
T Consensus 107 Gf~asfa~FlvtWIi~Yt~ 125 (129)
T KOG3415|consen 107 GFMASFALFLVTWIIFYTL 125 (129)
T ss_pred HHHHHHHHHHHHHHHHHhh
Confidence 6777788899999999873
No 6
>PF07436 Curto_V3: Curtovirus V3 protein; InterPro: IPR009997 This family consists of several Curtovirus V3 proteins of around 90 residues in length. The function of this family is unknown.
Probab=24.24 E-value=61 Score=20.77 Aligned_cols=28 Identities=36% Similarity=0.409 Sum_probs=24.7
Q ss_pred HHHHHHHHhhhHhhcCccceEEEEeecC
Q psy206 46 ITPTWEKLLDIQAVCPQSGLFVYESRQD 73 (78)
Q Consensus 46 ~i~~w~~~~~i~~~~~~~~~~~~~~~~~ 73 (78)
.++.|..++-|-+.+-|+|.=+|-.-|.
T Consensus 3 ClPDWlFLlFifsillQsgtNfYGTfqS 30 (87)
T PF07436_consen 3 CLPDWLFLLFIFSILLQSGTNFYGTFQS 30 (87)
T ss_pred cchhHHHHHHHHHHHHhcCCceeeeecc
Confidence 4689999999999999999999987664
No 7
>PF11511 RhodobacterPufX: Intrinsic membrane protein PufX; InterPro: IPR020169 PufX organises RC-LH1, the photosynthesis reaction centre-light harvesting complex 1 core complex of Rhodobacter sphaeroides []. It also facilitates the exchange of quinol for quinone between the reaction centre and cytochrome bc(1) complexes. In organic solvent, PufX contains two hydrophobic helices which are flanked by unstructured regions and connected by a helical bend [].; PDB: 2DW3_A 2ITA_A 2NRG_A.
Probab=23.77 E-value=55 Score=20.20 Aligned_cols=32 Identities=19% Similarity=0.376 Sum_probs=19.9
Q ss_pred cccceeccccccchhhhhHHHHHHHHHHHhhhHh
Q psy206 25 LGLWNCCPIAKDGAISGVLYFITPTWEKLLDIQA 58 (78)
Q Consensus 25 i~~w~i~Pl~kGIGyAsivi~~i~~w~~~~~i~~ 58 (78)
+++|-.--++||-|||++++ +.+|..+.+++-
T Consensus 16 L~~~~~~qMlkGag~Aav~~--~~~~~~l~~~~~ 47 (67)
T PF11511_consen 16 LRAWILFQMLKGAGYAAVFF--LGLWFLLVALYF 47 (67)
T ss_dssp HHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcccHHHHHH--HHHHHHHHHHHH
Confidence 34453333678999998764 455666665543
No 8
>PF10384 Scm3: Centromere protein Scm3; InterPro: IPR018465 The centromere protein Scm3 is a non-histone component of centromeric chromatin that binds to CenH3-H4 histones, which are required for kinetochore assembly. Scm3 is required for Cse4 localisation and is required for its centromeric association [, ]. The histone H3 variant Cse4 replaces conventional histone H3 in centromeric chromatin and helps direct the assembly of the kinetochore. In addition, Scm3 has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for G2/M progression []. Scm3 is required to maintain kinetochore function throughout the cell cycle. Scm3 contains a nuclear export signal (NES). The N-terminal region of Scm3 is well conserved and functions as the CenH3-interacting domain, while the C-terminal region is variable in size and sometimes consists of DNA binding motifs [].; GO: 0005634 nucleus; PDB: 3R45_C 2YFV_C 2L5A_A.
Probab=20.44 E-value=36 Score=20.16 Aligned_cols=7 Identities=71% Similarity=1.028 Sum_probs=4.3
Q ss_pred ecCCCCC
Q psy206 71 RQDNGHL 77 (78)
Q Consensus 71 ~~~~~~~ 77 (78)
+.|||||
T Consensus 45 v~dnGhL 51 (58)
T PF10384_consen 45 VVDNGHL 51 (58)
T ss_dssp EETTS-E
T ss_pred EEECCEE
Confidence 4688886
No 9
>PF03817 MadL: Malonate transporter MadL subunit; InterPro: IPR004690 The MSS family includes the monobasic malonate:Na+ symporter of Malonomonas rubra. It consists of two integral membrane proteins, MadL and MadM. The transporter is believed to catalyze the electroneutral reversible uptake of H+-malonate with one Na+, and both subunits have been shown to be essential for activity.
Probab=19.47 E-value=77 Score=21.75 Aligned_cols=49 Identities=16% Similarity=0.148 Sum_probs=26.9
Q ss_pred eeechhHHHHHHHhhhccCCCccccceeccccccchhhhhHHHHHHHHH
Q psy206 3 VLAGKPMYFLELAVGQFGGVGPLGLWNCCPIAKDGAISGVLYFITPTWE 51 (78)
Q Consensus 3 ~l~GiPlf~LE~slGQ~~~~g~i~~w~i~Pl~kGIGyAsivi~~i~~w~ 51 (78)
++.|+-+..+=+-.|++.+.-==..--+..---|+|+||++..+...|.
T Consensus 2 iIYGvAlLa~C~l~G~~~GdlLG~llGV~aNVGGVGiAMlLLI~~~~~l 50 (125)
T PF03817_consen 2 IIYGVALLAICTLAGVFLGDLLGALLGVKANVGGVGIAMLLLIFARLWL 50 (125)
T ss_pred eeeHHHHHHHHHHHHHHHHHHHHHHhCCCcccccHHHHHHHHHHHHHHH
Confidence 3455555555555565543210000012223458999999998887774
No 10
>PF11346 DUF3149: Protein of unknown function (DUF3149); InterPro: IPR021494 This bacterial family of proteins has no known function.
Probab=19.06 E-value=12 Score=21.00 Aligned_cols=33 Identities=9% Similarity=0.236 Sum_probs=16.8
Q ss_pred ccchhhhhHHHHHHHHHHHhhhHhhcCccceEEEEeecCC
Q psy206 35 KDGAISGVLYFITPTWEKLLDIQAVCPQSGLFVYESRQDN 74 (78)
Q Consensus 35 kGIGyAsivi~~i~~w~~~~~i~~~~~~~~~~~~~~~~~~ 74 (78)
.-+|..|+++.+... .|-+. --++|+|.++||+
T Consensus 9 s~vGL~Sl~vI~~~i-----gm~~~--~~~~F~~k~~~~~ 41 (42)
T PF11346_consen 9 SDVGLMSLIVIVFTI-----GMGVF--FIRYFIRKMKEDE 41 (42)
T ss_pred ChHHHHHHHHHHHHH-----HHHHH--HHHHHHHHHcccC
Confidence 346777766433221 11111 1356777777775
Done!