Query psy206
Match_columns 78
No_of_seqs 113 out of 588
Neff 5.0
Searched_HMMs 29240
Date Fri Aug 16 23:11:16 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy206.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/206hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2a65_A Leutaa, Na(+):neurotran 98.4 3.9E-08 1.3E-12 77.3 0.7 61 2-62 51-126 (519)
2 2dw3_A Intrinsic membrane prot 27.8 26 0.00089 21.3 1.4 32 25-58 18-49 (77)
3 2l5q_A Uncharacterized protein 25.2 28 0.00096 23.3 1.3 22 55-76 4-25 (142)
4 2nrg_A Intrinsic membrane prot 18.7 57 0.0019 20.0 1.7 32 25-58 19-50 (82)
5 4h6u_A Alpha-tubulin N-acetylt 11.6 39 0.0013 23.8 -0.6 12 65-76 122-133 (200)
6 4b5o_A Alpha-tubulin N-acetylt 8.7 57 0.002 22.9 -0.6 12 65-76 128-139 (200)
7 4hkr_A Calcium release-activat 8.3 1.7E+02 0.0059 20.7 1.8 31 5-44 122-153 (214)
8 1jdm_A Sarcolipin; helix, memb 7.8 2.5E+02 0.0085 14.0 1.8 17 37-53 10-26 (31)
9 4e0a_A BH1408 protein; structu 7.7 3E+02 0.01 15.2 2.5 24 29-52 95-118 (164)
10 3mgd_A Predicted acetyltransfe 7.1 3.3E+02 0.011 15.1 2.4 25 29-53 91-115 (157)
No 1
>2a65_A Leutaa, Na(+):neurotransmitter symporter (SNF family); membrane protein, transport protein; HET: BOG; 1.65A {Aquifex aeolicus} SCOP: f.54.1.1 PDB: 2q6h_A* 2q72_A* 2qb4_A* 2qei_A* 3f3a_A* 3f3c_A* 3f3d_A* 3f3e_A* 3f48_A* 3f4i_A* 3f4j_A* 3usg_A* 3usi_A 3usj_A 3usk_A 3usl_A* 3usm_A* 3uso_A 3usp_A* 3qs5_A* ...
Probab=98.41 E-value=3.9e-08 Score=77.30 Aligned_cols=61 Identities=20% Similarity=0.295 Sum_probs=51.4
Q ss_pred eeeechhHHHHHHHhhh----ccCCCccccc-eeccc--cccchhhhhHH--------HHHHHHHHHhhhHhhcCc
Q psy206 2 LVLAGKPMYFLELAVGQ----FGGVGPLGLW-NCCPI--AKDGAISGVLY--------FITPTWEKLLDIQAVCPQ 62 (78)
Q Consensus 2 L~l~GiPlf~LE~slGQ----~~~~g~i~~w-~i~Pl--~kGIGyAsivi--------~~i~~w~~~~~i~~~~~~ 62 (78)
+++.|+|++++|+++|| +++++++++| +++|. ++|+|+++++. +.+.+|.+.+...+.-+.
T Consensus 51 l~~~GiPll~~E~alGq~~~~~~r~~~i~a~~~l~~~~~~~giG~~~v~~~~~i~~yY~vi~gW~l~Y~~~s~~~~ 126 (519)
T 2a65_A 51 FLLVGIPLMWIEWAMGRYGGAQGHGTTPAIFYLLWRNRFAKILGVFGLWIPLVVAIYYVYIESWTLGFAIKFLVGL 126 (519)
T ss_dssp HHHTHHHHHHHHHHHHHHHHTTTCCSHHHHHHHHSCSHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHhcccchhccCCCHHHHHHHhcCCcCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 45689999999999999 7778999999 78875 99999997764 567789998888887654
No 2
>2dw3_A Intrinsic membrane protein PUFX; quinone exchange, photosynthesis, light- harvesting, GXXXG motif, dimerization; NMR {Rhodobacter sphaeroides} PDB: 2ita_A
Probab=27.77 E-value=26 Score=21.29 Aligned_cols=32 Identities=19% Similarity=0.249 Sum_probs=20.3
Q ss_pred cccceeccccccchhhhhHHHHHHHHHHHhhhHh
Q psy206 25 LGLWNCCPIAKDGAISGVLYFITPTWEKLLDIQA 58 (78)
Q Consensus 25 i~~w~i~Pl~kGIGyAsivi~~i~~w~~~~~i~~ 58 (78)
+++|-.--++||-|||++++ +.+|..+.+++-
T Consensus 18 Lr~~i~~qMlkGAg~AAv~f--~~~~~~lv~l~~ 49 (77)
T 2dw3_A 18 LRLWVAFQMMKGAGWAGGVF--FGTLLLIGFFRV 49 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcccHHHHHH--HHHHHHHHHHHH
Confidence 44563334679999998764 455666665553
No 3
>2l5q_A Uncharacterized protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Bacteroides vulgatus}
Probab=25.21 E-value=28 Score=23.35 Aligned_cols=22 Identities=23% Similarity=0.309 Sum_probs=19.1
Q ss_pred hhHhhcCccceEEEEeecCCCC
Q psy206 55 DIQAVCPQSGLFVYESRQDNGH 76 (78)
Q Consensus 55 ~i~~~~~~~~~~~~~~~~~~~~ 76 (78)
+|-||-|.||+|---||..||-
T Consensus 4 ~IlsISGKPGLykLvsq~k~g~ 25 (142)
T 2l5q_A 4 TILSIAGKPGLYKLISQGKNML 25 (142)
T ss_dssp SEEEECSSSCEEEEEEECSSCE
T ss_pred eEEEEcCCCceeEEeecCCceE
Confidence 4678999999999999988873
No 4
>2nrg_A Intrinsic membrane protein PUFX; BENT transmembrane helix, photosynthesis,membrane protein; NMR {Rhodobacter sphaeroides}
Probab=18.69 E-value=57 Score=19.98 Aligned_cols=32 Identities=19% Similarity=0.249 Sum_probs=20.4
Q ss_pred cccceeccccccchhhhhHHHHHHHHHHHhhhHh
Q psy206 25 LGLWNCCPIAKDGAISGVLYFITPTWEKLLDIQA 58 (78)
Q Consensus 25 i~~w~i~Pl~kGIGyAsivi~~i~~w~~~~~i~~ 58 (78)
+++|-.--++||-|||++.+ +.+|..+.+++-
T Consensus 19 Lr~wi~~qMlKGAG~AAv~f--l~~~~~lv~l~~ 50 (82)
T 2nrg_A 19 LRLWVAFQMMKGAGWAGGVF--FGTLLLIGFFRV 50 (82)
T ss_dssp HHHHHHHHHTHHHHTHHHHH--HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcccHHHHHH--HHHHHHHHHHHH
Confidence 44563334679999998764 455666665543
No 5
>4h6u_A Alpha-tubulin N-acetyltransferase; tubulin acetyltransferase; HET: ACO; 2.45A {Danio rerio} PDB: 4h6z_A*
Probab=11.58 E-value=39 Score=23.77 Aligned_cols=12 Identities=33% Similarity=0.542 Sum_probs=8.2
Q ss_pred eEEEEeecCCCC
Q psy206 65 LFVYESRQDNGH 76 (78)
Q Consensus 65 ~~~~~~~~~~~~ 76 (78)
.||.||||..|+
T Consensus 122 FYVhEs~QR~G~ 133 (200)
T 4h6u_A 122 FYVTETLQRHGY 133 (200)
T ss_dssp EEECGGGTTSSH
T ss_pred eeeehhhcccCc
Confidence 367777777664
No 6
>4b5o_A Alpha-tubulin N-acetyltransferase; microtubules, cilium, intraflagellar transport; HET: ACO; 1.05A {Homo sapiens} PDB: 4b5p_A*
Probab=8.66 E-value=57 Score=22.89 Aligned_cols=12 Identities=42% Similarity=0.778 Sum_probs=7.5
Q ss_pred eEEEEeecCCCC
Q psy206 65 LFVYESRQDNGH 76 (78)
Q Consensus 65 ~~~~~~~~~~~~ 76 (78)
.||.||+|..|+
T Consensus 128 FYVhEs~QR~G~ 139 (200)
T 4b5o_A 128 FYIHESVQRHGH 139 (200)
T ss_dssp EEECGGGTTSSH
T ss_pred EEechhhhhcCc
Confidence 466667766653
No 7
>4hkr_A Calcium release-activated calcium channel protein; ORAI1, eukaryotic membrane protein, membran protein, ION channel, STIM, membrane; 3.35A {Drosophila melanogaster} PDB: 4hks_A
Probab=8.31 E-value=1.7e+02 Score=20.70 Aligned_cols=31 Identities=23% Similarity=0.478 Sum_probs=16.9
Q ss_pred echhHHHHHHHhhhccCCCccccc-eeccccccchhhhhHH
Q psy206 5 AGKPMYFLELAVGQFGGVGPLGLW-NCCPIAKDGAISGVLY 44 (78)
Q Consensus 5 ~GiPlf~LE~slGQ~~~~g~i~~w-~i~Pl~kGIGyAsivi 44 (78)
.|+++|..|+++ -+| |.-|.-+.-+++...+
T Consensus 122 lGi~LFL~eval---------l~WVKF~~~~~~aa~~~t~v 153 (214)
T 4hkr_A 122 LGLILFLLEIAI---------LCWVKFYDLSRRAAWSATVV 153 (214)
T ss_dssp HHHHHHHHHHHH---------HHHHHHTTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHH---------hheEEeecCCcHHHHHHHHH
Confidence 467777777765 234 4444444445555443
No 8
>1jdm_A Sarcolipin; helix, membrane protein; NMR {Synthetic} SCOP: j.35.1.1
Probab=7.84 E-value=2.5e+02 Score=14.01 Aligned_cols=17 Identities=18% Similarity=0.169 Sum_probs=12.0
Q ss_pred chhhhhHHHHHHHHHHH
Q psy206 37 GAISGVLYFITPTWEKL 53 (78)
Q Consensus 37 IGyAsivi~~i~~w~~~ 53 (78)
+.++.++++.++-|.++
T Consensus 10 ~NFt~vLI~vlLi~llV 26 (31)
T 1jdm_A 10 LNFTIVLITVILMWLLV 26 (31)
T ss_dssp HHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 35667778888888764
No 9
>4e0a_A BH1408 protein; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG, transferase; 1.80A {Bacillus halodurans} PDB: 4f6a_A*
Probab=7.66 E-value=3e+02 Score=15.22 Aligned_cols=24 Identities=13% Similarity=0.230 Sum_probs=20.1
Q ss_pred eeccccccchhhhhHHHHHHHHHH
Q psy206 29 NCCPIAKDGAISGVLYFITPTWEK 52 (78)
Q Consensus 29 ~i~Pl~kGIGyAsivi~~i~~w~~ 52 (78)
.+.|-++|-|++..++..+..|..
T Consensus 95 ~V~p~~rg~Gig~~ll~~~~~~~~ 118 (164)
T 4e0a_A 95 CVDETRRGGGIGRLIFEAIISYGK 118 (164)
T ss_dssp EECGGGCSSSHHHHHHHHHHHHHH
T ss_pred EECHHHhcCChHHHHHHHHHHHHH
Confidence 467889999999999988888764
No 10
>3mgd_A Predicted acetyltransferase; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG; HET: ACO; 1.90A {Clostridium acetobutylicum}
Probab=7.13 E-value=3.3e+02 Score=15.05 Aligned_cols=25 Identities=12% Similarity=-0.037 Sum_probs=20.4
Q ss_pred eeccccccchhhhhHHHHHHHHHHH
Q psy206 29 NCCPIAKDGAISGVLYFITPTWEKL 53 (78)
Q Consensus 29 ~i~Pl~kGIGyAsivi~~i~~w~~~ 53 (78)
.+.|-.+|-|++..++..+..|..=
T Consensus 91 ~V~p~~rg~Gig~~Ll~~~~~~~~~ 115 (157)
T 3mgd_A 91 YTEPTSRGNGIATGMLDRLVNEAKE 115 (157)
T ss_dssp EECGGGTTSSHHHHHHHHHHHHHHH
T ss_pred EEcHHHcCCCHHHHHHHHHHHHHHH
Confidence 4678899999999999888887643
Done!