RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy206
(78 letters)
>gnl|CDD|212069 cd11500, SLC6sbd_PROT, Na(+)- and Cl(-)-dependent L-proline
transporter PROT; solute-binding domain. PROT is a
high-affinity L-proline transporter that transports
L-proline, and may have a role in excitatory
neurotransmission. Human PROT is encoded by the SLC6A7
gene, a potential susceptible gene for asthma. PROT is
expressed in the brain. This subgroup belongs to the
solute carrier 6 (SLC6) transporter family.
Length = 544
Score = 55.1 bits (133), Expect = 1e-10
Identities = 19/35 (54%), Positives = 27/35 (77%)
Query: 1 MLVLAGKPMYFLELAVGQFGGVGPLGLWNCCPIAK 35
ML G P++F+EL++GQ+G +GPL +W CCPI K
Sbjct: 46 MLAFCGIPLFFMELSLGQYGSLGPLTVWKCCPIFK 80
Score = 29.3 bits (66), Expect = 0.16
Identities = 7/21 (33%), Positives = 14/21 (66%)
Query: 37 GAISGVLYFITPTWEKLLDIQ 57
GA+ G+ +++TP + +L Q
Sbjct: 229 GALKGIQFYLTPDFHRLASSQ 249
>gnl|CDD|212034 cd10324, SLC6sbd, Solute carrier 6 family, neurotransmitter
transporters; solute-binding domain. This family
represents the solute-binding domain of SLC6 proteins
(also called the sodium- and chloride-dependent
neurotransmitter transporter family or
Na+/Cl--dependent transporter family). These use sodium
and chloride electrochemical gradients to catalyze the
thermodynamically uphill movement of a variety of
substrates, and include neurotransmitter transporters
(NTTs). The latter are Na+/Cl--dependent plasma
membrane transporters for the monoamine
neurotransmitters serotonin (5-hydroxytryptamine),
dopamine, and norepinephrine, and the amino acid
neurotransmitters GABA and glycine. NTTs are widely
expressed in the mammalian brain, and are involved in
regulating neurotransmitter signaling and homeostasis,
through facilitating the uptake of released
neurotransmitters from the extracellular space into
neurons and glial cells. NTTs are the target of a range
of therapeutic drugs for the treatment of psychiatric
diseases, such as major depression, anxiety disorders,
attention deficit hyperactivity disorder and epilepsy.
In addition, they are the primary targets of cocaine,
amphetamines and other psychostimulants. This family
also includes Drosophila Blot which is expressed
primarily in epithelial tissues of ectodermal origin
and in the nervous system of the embryo and larvae, but
in addition found in the developing oocyte and the
freshly laid egg. A lack or reduction of Blot function
during oogenesis results in early arrest of embryonic
development. 12 transmembrane helices (TMs) appears to
be common for eukaryotic and some prokaryotic and
archaeal SLC6s, (a core inverted topology repeat, TM1-5
and TM6-10, plus TMs11-12; TMs numbered to conform to
the SLC6 Aquifex aeolicus LeuT), although a majority of
bacterial, and some archaeal SLC6s lack TM12, for
example the functional Fusobacterium nucleatum tyrosine
transporter Tyt1.
Length = 417
Score = 49.8 bits (120), Expect = 7e-09
Identities = 19/36 (52%), Positives = 26/36 (72%), Gaps = 1/36 (2%)
Query: 1 MLVLAGKPMYFLELAVGQFGGVGPLG-LWNCCPIAK 35
ML+L G P++FLELA+GQ+ GP+G W CP+ K
Sbjct: 45 MLLLVGIPLFFLELALGQYTSRGPVGAFWRICPLFK 80
Score = 35.9 bits (84), Expect = 6e-04
Identities = 13/22 (59%), Positives = 16/22 (72%)
Query: 36 DGAISGVLYFITPTWEKLLDIQ 57
GA G+LYF+TP W KLLD +
Sbjct: 165 PGAGDGILYFLTPDWSKLLDPK 186
>gnl|CDD|212070 cd11501, SLC6sbd_ATB0, Na(+)- and Cl(-)-dependent beta-alanine
transporter ATB0+; solute-binding domain. ATB0+ (also
known as the beta-alanine carrier) is a transmembrane
transporter with a broad substrate specificity; it can
transport non-alpha-amino acids such as beta-alanine
with low affinity, and can transport dipolar and
cationic amino acids such as leucine and lysine, with a
higher affinity. It may have a role in the absorption
of essential nutrients and drugs in the distal regions
of the human gastrointestinal tract. Human ATB0+ is
encoded by the SLC6A14 gene. ATB0+ is expressed in the
lung, trachea, salivary gland, mammary gland, stomach,
and pituitary gland. ATB0+ may play a role in obesity,
and its upregulation may have a pathogenic role in
colorectal cancer. This subgroup belongs to the solute
carrier 6 (SLC6) transporter family.
Length = 601
Score = 45.2 bits (107), Expect = 3e-07
Identities = 19/43 (44%), Positives = 29/43 (67%)
Query: 1 MLVLAGKPMYFLELAVGQFGGVGPLGLWNCCPIAKDGAISGVL 43
ML LAG P++FLE ++GQF +GP+ +W P+ + I+ VL
Sbjct: 46 MLALAGLPLFFLECSLGQFASLGPISVWRAVPLLQGVGITMVL 88
>gnl|CDD|212065 cd11496, SLC6sbd-TauT-like, Na(+)- and Cl(-)-dependent taurine
transporter TauT, and related proteins; solute-binding
domain. This subgroup represents the solute-binding
domain of TauT-like Na(+)- and Cl(-)-dependent
transporters. Family members include: human TauT which
transports taurine, human GAT1, GAT2, and GAT3, and
BGT1, which transport gamma-aminobutyric acid (GABA),
and human CT1 which transports creatine. This subgroup
belongs to the solute carrier 6 (SLC6) transporter
family.
Length = 543
Score = 44.9 bits (107), Expect = 5e-07
Identities = 16/34 (47%), Positives = 23/34 (67%)
Query: 2 LVLAGKPMYFLELAVGQFGGVGPLGLWNCCPIAK 35
LVL G P++FLE+A+GQ+ G + W CP+ K
Sbjct: 47 LVLCGIPIFFLEVALGQYTSQGGITAWKICPLFK 80
Score = 31.0 bits (71), Expect = 0.037
Identities = 9/22 (40%), Positives = 13/22 (59%)
Query: 36 DGAISGVLYFITPTWEKLLDIQ 57
GA G+ +++ P KLLD Q
Sbjct: 229 PGASDGIYFYLKPDLTKLLDPQ 250
>gnl|CDD|212083 cd11514, SLC6sbd_DAT1, Na(+)- and Cl(-)-dependent dopamine
transporter 1; solute-binding domain. DAT1 (also
called DAT), is a plasma membrane transport protein
that functions at the dopaminergic synapses to
transport dopamine from the extracellular space back
into the presynaptic nerve terminal. Human DAT1 is
encoded by the SLC6A3 gene, and is expressed in the
brain. DAT1 may play a role in diseases or disorders
related to dopaminergic neurons, including
attention-deficit hyperactivity disorder (ADHD),
Tourette syndrome, Parkinson's disease, alcoholism,
drug abuse, schizophrenia, extraversion, and risky
behavior. This subgroup belongs to the solute carrier 6
(SLC6) transporter family.
Length = 555
Score = 43.4 bits (102), Expect = 1e-06
Identities = 17/34 (50%), Positives = 25/34 (73%)
Query: 2 LVLAGKPMYFLELAVGQFGGVGPLGLWNCCPIAK 35
+V+AG P++++ELA+GQF G G+W CPI K
Sbjct: 47 MVIAGMPLFYMELALGQFNREGAAGVWKICPIFK 80
>gnl|CDD|212067 cd11498, SLC6sbd_GlyT1, Na(+)- and Cl(-)-dependent glycine
transporter GlyT1; solute-binding domain. GlyT1 is a
membrane-bound transporter that re-uptakes glycine from
the synaptic cleft. Human GlyT1 is encoded by the
SLC6A9 gene. GlyT1 is expressed in brain, pancreas,
uterus, stomach, spleen, liver, and retina. GlyT1 may
play a role in schizophrenia. This subgroup belongs to
the solute carrier 6 (SLC6) transporter family.
Length = 585
Score = 41.8 bits (98), Expect = 6e-06
Identities = 17/35 (48%), Positives = 23/35 (65%)
Query: 1 MLVLAGKPMYFLELAVGQFGGVGPLGLWNCCPIAK 35
MLV G P++F+EL+ GQF G LG+W P+ K
Sbjct: 62 MLVFCGIPLFFMELSFGQFASQGCLGVWRVSPMFK 96
Score = 35.3 bits (81), Expect = 0.001
Identities = 13/23 (56%), Positives = 20/23 (86%)
Query: 33 IAKDGAISGVLYFITPTWEKLLD 55
I +GAISG++Y++TP W+K+LD
Sbjct: 253 ITLEGAISGIMYYLTPQWDKILD 275
>gnl|CDD|212068 cd11499, SLC6sbd_GlyT2, Na(+)- and Cl(-)-dependent glycine
transporter GlyT2; solute-binding domain. GlyT2 (also
called NET1) is a membrane-bound transporter that
re-uptakes glycine from the synaptic cleft. Human GlyT2
is encoded by the SLC6A5 gene. GlyT2 is expressed in
brain and spinal cord. GlyT2 may play a role in pain,
and in spasticity. This subgroup belongs to the solute
carrier 6 (SLC6) transporter family.
Length = 606
Score = 41.1 bits (96), Expect = 1e-05
Identities = 16/32 (50%), Positives = 23/32 (71%)
Query: 1 MLVLAGKPMYFLELAVGQFGGVGPLGLWNCCP 32
ML LAG P++FLE+++GQF GP+ +W P
Sbjct: 46 MLALAGIPIFFLEVSLGQFASQGPVSVWKAIP 77
Score = 34.2 bits (78), Expect = 0.003
Identities = 13/19 (68%), Positives = 15/19 (78%)
Query: 37 GAISGVLYFITPTWEKLLD 55
GA +G+ YFITP WEKL D
Sbjct: 255 GAGAGIWYFITPKWEKLND 273
>gnl|CDD|212075 cd11506, SLC6sbd_GAT1, Na(+)- and Cl(-)-dependent GABA transporter
1; solute-binding domain. GAT1 transports
gamma-aminobutyric acid (GABA). GABA is the main
inhibitory neurotransmitter within the mammalian CNS.
Human GAT1 is encoded by the SLC6A1 gene. GAT1 is
expressed in brain and peripheral nervous system. The
antiepileptic drug, Tiagabine, inhibits GAT1. This
subgroup belongs to the solute carrier 6 (SLC6)
transporter family.
Length = 598
Score = 39.6 bits (92), Expect = 3e-05
Identities = 18/45 (40%), Positives = 28/45 (62%), Gaps = 1/45 (2%)
Query: 2 LVLAGKPMYFLELAVGQFGGVGPLGLWNCCPIAKD-GAISGVLYF 45
L+ AG P++ LE ++GQ+ +G LG+W P+ K G + VL F
Sbjct: 89 LIFAGVPLFLLECSLGQYTSIGGLGVWKLAPMFKGVGLAAAVLSF 133
Score = 25.3 bits (55), Expect = 3.4
Identities = 10/19 (52%), Positives = 14/19 (73%)
Query: 37 GAISGVLYFITPTWEKLLD 55
GA G+L++ITP + KL D
Sbjct: 262 GAKEGILFYITPNFSKLSD 280
>gnl|CDD|212040 cd10332, SLC6sbd-B0AT-like, System B(0) neutral amino acid
transporter AT1, 2 and 3, and related proteins;
solute-binding domain. This subgroup includes the
solute-binding domain of transmembrane transporters,
which transport, i) neutral amino acids: NTT4 (also
called XT1), SBAT1 (also called B0AT2, v7-3, NTT7-3),
and B0AT1 (also called HND); the human genes encoding
these are SLC6A17, SLC6A15, and SLC6A19 respectively,
ii) glycine: B0AT3 (also called Xtrp2, XT2), iii) imino
acids, such as proline, pipecolate, MeAIB, and
sarcosine: SIT1 (also called XTRP3, XT3, IMINO). The
human genes encoding B0AT3 and SIT1 are SLC6A18 and
SLC6A20 respectively. Transporters in this subgroup may
play a role in disorders including major depression,
Hartnup disorder, increased susceptibility to
myocardial infarction, and iminoglycinuria. This
subgroup belongs to the solute carrier 6 (SLC6)
transporter family.
Length = 565
Score = 39.2 bits (92), Expect = 5e-05
Identities = 17/29 (58%), Positives = 22/29 (75%)
Query: 1 MLVLAGKPMYFLELAVGQFGGVGPLGLWN 29
MLVL G P++FLELA+GQ G +G+WN
Sbjct: 46 MLVLEGIPLFFLELAIGQRLRKGSIGVWN 74
Score = 28.4 bits (64), Expect = 0.33
Identities = 11/22 (50%), Positives = 14/22 (63%)
Query: 36 DGAISGVLYFITPTWEKLLDIQ 57
GA G+ + TP +EKLLD Q
Sbjct: 214 KGAGDGLKHMFTPKFEKLLDPQ 235
>gnl|CDD|215790 pfam00209, SNF, Sodium:neurotransmitter symporter family.
Length = 506
Score = 38.8 bits (91), Expect = 6e-05
Identities = 17/36 (47%), Positives = 25/36 (69%), Gaps = 1/36 (2%)
Query: 1 MLVLAGKPMYFLELAVGQFGGVGPLGLWN-CCPIAK 35
L+ AG P++FLELA+GQ+ G +G+W CP+ K
Sbjct: 46 FLITAGIPLFFLELALGQYTREGAIGVWRKICPLFK 81
Score = 28.4 bits (64), Expect = 0.30
Identities = 11/21 (52%), Positives = 15/21 (71%)
Query: 37 GAISGVLYFITPTWEKLLDIQ 57
GA G+ +++TP W KLLD Q
Sbjct: 211 GAADGIDFYLTPDWSKLLDPQ 231
>gnl|CDD|212066 cd11497, SLC6sbd_SERT-like, Na(+)- and Cl(-)-dependent monoamine
transporters, SERT, NET, DAT1 and related proteins;
solute binding domain. This subgroup represents the
solute-binding domain of transmembrane transporters
that transport monoamine neurotransmitters from
synaptic spaces into presynaptic neurons. Members
include: NET which transports norepinephrine, SERT
which transports serotonin, and DAT1 which transports
dopamine. These transporters may play a role in
diseases including depression, anxiety disorders,
attention-deficit hyperactivity disorder, and in the
control of human behavior and emotional states. This
subgroup belongs to the solute carrier 6 (SLC6)
transporter family.
Length = 539
Score = 38.4 bits (90), Expect = 7e-05
Identities = 15/36 (41%), Positives = 24/36 (66%), Gaps = 1/36 (2%)
Query: 1 MLVLAGKPMYFLELAVGQFGGVGPLGLWN-CCPIAK 35
ML+ G P++++ELA+GQ+ G + +W CPI K
Sbjct: 46 MLIFGGLPLFYMELALGQYHRSGCITVWRKICPIFK 81
Score = 31.9 bits (73), Expect = 0.016
Identities = 10/21 (47%), Positives = 14/21 (66%)
Query: 37 GAISGVLYFITPTWEKLLDIQ 57
GA G+ Y++TP W KL D +
Sbjct: 229 GASDGIKYYLTPNWSKLKDPK 249
>gnl|CDD|212078 cd11509, SLC6sbd_CT1, Na(+)- and Cl(-)-dependent creatine
transporter 1; solute-binding domain. CT1 (also called
CRTR, CRT) transports creatine. Human CT1 is encoded by
the SLC6A8 gene. CT1 is ubiquitously expressed, with
highest levels found in skeletal muscle and kidney.
Creatine is absorbed from food or synthesized from
arginine and plays an important role in energy
metabolism. Deficiency in human CT1 leads to X-linked
cerebral creatine transporter deficiency. In males,
this disorder is characterized by language and speech
delays, autistic-like behavior, seizures in about 50%
of cases, and can also involve midfacial hypoplasia,
and short stature. In females, it is characterized by
mild cognitive impairment with behavior and learning
problems. This subgroup belongs to the solute carrier 6
(SLC6) transporter family.
Length = 592
Score = 38.3 bits (89), Expect = 1e-04
Identities = 19/48 (39%), Positives = 28/48 (58%), Gaps = 1/48 (2%)
Query: 4 LAGKPMYFLELAVGQFGGVGPLGLWNCCPIAKD-GAISGVLYFITPTW 50
+ G P++FLE+A+GQF G + WN P+ K G S V+ F T+
Sbjct: 49 VGGIPVFFLEIALGQFMKQGGINAWNIAPLFKGLGYASMVIVFFCNTY 96
Score = 26.8 bits (59), Expect = 0.99
Identities = 9/21 (42%), Positives = 15/21 (71%)
Query: 37 GAISGVLYFITPTWEKLLDIQ 57
GA+ G++Y++ P W KL + Q
Sbjct: 241 GALDGIIYYLKPDWSKLGEAQ 261
>gnl|CDD|212081 cd11512, SLC6sbd_NET, Na(+)- and Cl(-)-dependent norepinephrine
transporter NET; solute-binding domain. NET (also
called NAT1, NET1), is a transmembrane transporter that
transports the neurotransmitter norepinephrine from
synaptic spaces into presynaptic neurons. Human NET is
encoded by the SLC6A2 gene. NET is expressed in brain,
peripheral nervous system, adrenal gland, and placenta.
NET may play a role in diseases or disorders including
depression, orthostatic intolerance, anorexia nervosa,
cardiovascular diseases, alcoholism, and
attention-deficit hyperactivity disorder. This subgroup
belongs to the solute carrier 6 (SLC6) transporter
family.
Length = 560
Score = 38.0 bits (88), Expect = 1e-04
Identities = 14/34 (41%), Positives = 23/34 (67%)
Query: 2 LVLAGKPMYFLELAVGQFGGVGPLGLWNCCPIAK 35
L++AG P++++ELA+GQ+ G +W CP K
Sbjct: 47 LIIAGMPLFYMELALGQYNREGAATVWKICPCFK 80
>gnl|CDD|212090 cd11521, SLC6sbd_NTT4, Na(+)-dependent neurotransmitter
transporter 4; solute-binding domain. NTT4 (also
called XT1) transports the neutral amino acids,
proline, glycine, leucine, and alanine, and may play an
important role in synaptic transmission. Human NTT4 is
encoded by the SLC6A17 gene. NTT4 is specifically
expressed in the nervous system, in synaptic vesicles
of glutamatergic and GABAergic neurons. This subgroup
belongs to the solute carrier 6 (SLC6) transporter
family.
Length = 589
Score = 37.6 bits (87), Expect = 2e-04
Identities = 17/33 (51%), Positives = 24/33 (72%), Gaps = 1/33 (3%)
Query: 1 MLVLAGKPMYFLELAVGQFGGVGPLGLWN-CCP 32
+L++ G P++FLELAVGQ G +G+WN CP
Sbjct: 46 LLIIIGIPLFFLELAVGQRIRRGSIGVWNYICP 78
Score = 26.0 bits (57), Expect = 2.1
Identities = 10/21 (47%), Positives = 15/21 (71%)
Query: 37 GAISGVLYFITPTWEKLLDIQ 57
GA+ G+L+ TP +K+LD Q
Sbjct: 217 GAVDGILHMFTPKLDKMLDPQ 237
>gnl|CDD|212071 cd11502, SLC6sbd_NTT5, Neurotransmitter transporter 5;
solute-binding domain. Human NTT5 is encoded by the
SLC6A16 gene. NTT5 is expressed in testis, pancreas,
and prostate; its expression is predominantly
intracellular, indicative of a vesicular location. Its
substrates are unknown. This subgroup belongs to the
solute carrier 6 (SLC6) transporter family.
Length = 543
Score = 36.6 bits (85), Expect = 4e-04
Identities = 14/30 (46%), Positives = 18/30 (60%)
Query: 1 MLVLAGKPMYFLELAVGQFGGVGPLGLWNC 30
ML L G P+ FLE+AVGQ G + +W
Sbjct: 46 MLFLVGIPLLFLEMAVGQRLQQGSIRVWKA 75
>gnl|CDD|212094 cd11556, SLC6sbd_SERT-like_u1, uncharacterized subgroup of the
SERT-like Na(+)- and Cl(-)-dependent monoamine
transporter subfamily; solute binding domain.
SERT-like Na(+)- and Cl(-)-dependent monoamine
transporters, transport monoamine neurotransmitters
from synaptic spaces into presynaptic neurons. Members
include: the norepinephrine transporter NET, the
serotonin transporter SERT , and the dopamine
transporter DAT1. These latter may play a role in
diseases or disorders including depression, anxiety
disorders, and attention-deficit hyperactivity
disorder, and in the control of human behavior and
emotional states. They belongs to the solute carrier 6
(SLC6) transporter family. Members of this subgroup are
uncharacterized.
Length = 552
Score = 34.7 bits (80), Expect = 0.002
Identities = 15/36 (41%), Positives = 24/36 (66%), Gaps = 1/36 (2%)
Query: 1 MLVLAGKPMYFLELAVGQFGGVGPLGLWN-CCPIAK 35
MLV+ G P++++ELA+GQ+ G + W CP+ K
Sbjct: 46 MLVVGGIPLFYMELALGQYYRKGAITSWGRICPLFK 81
>gnl|CDD|212091 cd11522, SLC6sbd_SBAT1, Sodium-coupled branched-chain amino-acid
transporter 1; solute-binding domain. SBAT1 (also
called B0AT2, v7-3, NTT7-3) is a high-affinity
Na(+)-dependent transporter for large neutral amino
acids, including leucine, isoleucine, valine, proline
and methionine. Human SBAT1 is encoded by the SLC6A15
gene, a susceptibility gene for major depression. SBAT1
is expressed in brain, and may have a role in
transporting neurotransmitter precursors into neurons.
This subgroup belongs to the solute carrier 6 (SLC6)
transporter family.
Length = 580
Score = 34.5 bits (79), Expect = 0.002
Identities = 14/29 (48%), Positives = 22/29 (75%)
Query: 1 MLVLAGKPMYFLELAVGQFGGVGPLGLWN 29
+L++ G P++FLEL+VGQ G +G+WN
Sbjct: 46 LLLVIGIPLFFLELSVGQRIRRGSIGVWN 74
>gnl|CDD|212087 cd11518, SLC6sbd_SIT1, Na(+)- and Cl(-)-dependent imino acid
transporter SIT1; solute-binding domain. SIT1 (also
called XTRP3, XT3, IMINO) transports imino acids, such
as proline, pipecolate, MeAIB, and sarcosine. It has
weak affinity for neutral amino acids such as
phenylalanine. Human SIT1 is encoded by the SLC6A20
gene. SIT1 is expressed in brain, kidney, small
intestine, thymus, spleen, ovary, and lung. SLC6A20 is
a candidate gene for the rare disorder iminoglycinuria.
This subgroup belongs to the solute carrier 6 (SLC6)
transporter family.
Length = 576
Score = 34.4 bits (79), Expect = 0.002
Identities = 15/28 (53%), Positives = 19/28 (67%)
Query: 1 MLVLAGKPMYFLELAVGQFGGVGPLGLW 28
ML+L G P+ +LELAVGQ G +G W
Sbjct: 49 MLILEGMPLLYLELAVGQRMRQGSIGAW 76
>gnl|CDD|212082 cd11513, SLC6sbd_SERT, Na(+)- and Cl(-)-dependent serotonin
transporter SERT; solute-binding domain. SERT (also
called 5-HTT), is a transmembrane transporter that
transports the neurotransmitter serotonin from synaptic
spaces into presynaptic neurons. The antiport of a K+
ion is believed to follow the transport of serotonin
and promote the reorientation of SERT for another
transport cycle. Human SERT is encoded by the SLC6A4
gene. SERT is expressed in brain, peripheral nervous
system, placenta, epithelium, and platelets. SERT may
play a role in diseases or disorders including anxiety,
depression, autism, gastrointestinal disorders,
premature ejaculation, and obesity. It may also have a
role in social cognition. This subgroup belongs to the
solute carrier 6 (SLC6) transporter family.
Length = 537
Score = 34.0 bits (78), Expect = 0.003
Identities = 14/36 (38%), Positives = 23/36 (63%), Gaps = 1/36 (2%)
Query: 1 MLVLAGKPMYFLELAVGQFGGVGPLGLW-NCCPIAK 35
M + G P++++ELA+GQ+ G + +W CPI K
Sbjct: 46 MAIFGGIPLFYMELALGQYHRTGCISIWRKICPIFK 81
Score = 27.8 bits (62), Expect = 0.41
Identities = 10/19 (52%), Positives = 14/19 (73%)
Query: 37 GAISGVLYFITPTWEKLLD 55
GA GV+Y++ P W KLL+
Sbjct: 226 GAWRGVVYYLKPKWHKLLE 244
>gnl|CDD|212084 cd11515, SLC6sbd_NTT4-like, Na(+)-dependent neurotransmitter
transporter 4, and related proteins; solute-binding
domain. This subgroup includes the solute-binding
domain of NTT4 (also called XT1) and SBAT1 (also called
B0AT2, v7-3, NTT7-3); both these proteins can transport
neutral amino acids. Human SBAT1 is encoded by the
SLC6A15 gene, a susceptibility gene for major
depression. SBAT1 is expressed in brain, and may have a
role in transporting neurotransmitter precursors into
neurons. Human NTT4 is encoded by the SLC6A17 gene.
NTT4 is specifically expressed in the nervous system,
in synaptic vesicles of glutamatergic and GABAergic
neurons, and may play an important role in synaptic
transmission. This subgroup belongs to the solute
carrier 6 (SLC6) transporter family.
Length = 530
Score = 33.7 bits (77), Expect = 0.003
Identities = 15/33 (45%), Positives = 23/33 (69%), Gaps = 1/33 (3%)
Query: 1 MLVLAGKPMYFLELAVGQFGGVGPLGLWN-CCP 32
+L++ G P++FLEL+VGQ G +G+WN P
Sbjct: 46 LLIVIGIPLFFLELSVGQRIRRGSIGVWNYISP 78
>gnl|CDD|212079 cd11510, SLC6sbd_TauT, Na(+)- and Cl(-)-dependent taurine
transporter; solute-binding domain. TauT is a Na(+)-
and Cl(-)-dependent, high-affinity, low-capacity
transporter of taurine and beta-alanine. Human TauT is
encoded by the SLC6A6 gene. TauT is expressed in brain,
retina, liver, kidney, heart, spleen, and pancreas. It
may play a part in the supply of taurine to the
intestinal epithelium and in the between-meal-capture
of taurine. It may also participate in re-absorbing
taurine that has been deconjugated from bile acids in
the distal lumen. Functional TauT protects kidney cells
from nephrotoxicity caused by the chemotherapeutic
agent cisplatin; cisplatin down-regulates TauT in a
p53-dependent manner. In mice, TauT has been shown to
be important for the maintenance of skeletal muscle
function and total exercise capacity. TauT-/- mice
develop additional clinically important diseases, some
of which are characterized by apoptosis, including
vision loss, olfactory dysfunction, and chronic liver
disease. This subgroup belongs to the solute carrier 6
(SLC6) transporter family.
Length = 542
Score = 31.3 bits (71), Expect = 0.030
Identities = 14/33 (42%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
Query: 2 LVLAGKPMYFLELAVGQFGGVGPLGLWN-CCPI 33
L G P++FLE+A+GQ+ G + W CPI
Sbjct: 47 LFGGGLPVFFLEVALGQYTSEGGITCWEKLCPI 79
>gnl|CDD|212086 cd11517, SLC6sbd_B0AT3, glycine transporter, B0AT3;
solute-binding domain. B0AT3 (also called Xtrp2, XT2)
transports glycine. Human B0AT3 is encoded by the
SLC6A18 gene. B0AT3 is expressed in the kidney.
Mutations in the SLC6A18 gene may contribute to the
autosomal recessive disorder iminoglycinuria and its
related disorder hyperglycinuria. SLC6A18 or its
neighboring genes are associated with increased
susceptibility to myocardial infarction. This subgroup
belongs to the solute carrier 6 (SLC6) transporter
family.
Length = 576
Score = 29.0 bits (65), Expect = 0.16
Identities = 13/28 (46%), Positives = 18/28 (64%)
Query: 2 LVLAGKPMYFLELAVGQFGGVGPLGLWN 29
LV G P++ LELA+GQ G +G+W
Sbjct: 48 LVFEGIPLFHLELAIGQRLRKGSIGVWT 75
>gnl|CDD|201420 pfam00735, Septin, Septin. Members of this family include CDC3,
CDC10, CDC11 and CDC12/Septin. Members of this family
bind GTP. As regards the septins, these are polypeptides
of 30-65kDa with three characteristic GTPase motifs
(G-1, G-3 and G-4) that are similar to those of the Ras
family. The G-4 motif is strictly conserved with a
unique septin consensus of AKAD. Most septins are
thought to have at least one coiled-coil region, which
in some cases is necessary for intermolecular
interactions that allow septins to polymerise to form
rod-shaped complexes. In turn, these are arranged into
tandem arrays to form filaments. They are
multifunctional proteins, with roles in cytokinesis,
sporulation, germ cell development, exocytosis and
apoptosis.
Length = 280
Score = 28.8 bits (65), Expect = 0.19
Identities = 10/26 (38%), Positives = 14/26 (53%), Gaps = 2/26 (7%)
Query: 35 KDGAISGVLYFITPTWEKL--LDIQA 58
D + LYFI+PT L LD++
Sbjct: 109 VDNRVHCCLYFISPTGHGLKPLDVEF 134
>gnl|CDD|212080 cd11511, SLC6sbd_BGT1, Na(+)- and Cl(-)-dependent betaine/GABA
transporter-1, and related proteins; solute-binding
domain. BGT1 is a relatively low-affinity transporter
of gamma-aminobutyric acid (GABA), and can also
transport betaine. GABA is the main inhibitory
neurotransmitter within the mammalian CNS. Human BGT1
is encoded by the SLC6A12 gene, and is similar to mouse
GAT2. Mouse GAT2 plays a role in transporting GABA
across the blood-brain barrier. In addition to being
expressed in cells of the central nervous system, BGT1
is expressed in peripheral tissues, including kidney,
liver, and heart. An association has been shown between
the SLC6A12 gene and the occurrence of
aspirin-intolerant asthma, and BGT1 is a drug target
for antiepileptic drugs. This subgroup belongs to the
solute carrier 6 (SLC6) transporter family.
Length = 541
Score = 28.7 bits (64), Expect = 0.20
Identities = 14/33 (42%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
Query: 2 LVLAGKPMYFLELAVGQFGGVGPLGLW-NCCPI 33
L G P++FLE A+GQ+ G + W CPI
Sbjct: 48 LFTCGIPLFFLETALGQYTSQGGVTAWRKICPI 80
>gnl|CDD|212085 cd11516, SLC6sbd_B0AT1, Na(+)-dependent neutral amino acids
transporter, B0AT1; solute-binding domain. B0AT1 (also
called HND) transports neutral amino acids. Human B0AT1
is encoded by the SLC6A19 gene. B0AT1 is expressed
primarily in the kidney and intestine; it requires
collectrin for expression in the kidney, and
angiotensin-converting enzyme 2 for expression in the
intestine. Interaction with these two proteins
implicates B0AT1 in more complex processes such as
glomerular structure, exocytosis, and blood pressure
control. The autosomal recessive disorder, Hartnup
disorder, is caused by mutations in B0AT1. This
subgroup belongs to the solute carrier 6 (SLC6)
transporter family.
Length = 581
Score = 28.7 bits (64), Expect = 0.21
Identities = 12/29 (41%), Positives = 18/29 (62%)
Query: 1 MLVLAGKPMYFLELAVGQFGGVGPLGLWN 29
+LV G P+ LE A+GQ G +G+W+
Sbjct: 46 LLVFEGIPLLHLEFAIGQRLRKGSVGVWS 74
>gnl|CDD|206649 cd01850, CDC_Septin, CDC/Septin GTPase family. Septins are a
conserved family of GTP-binding proteins associated with
diverse processes in dividing and non-dividing cells.
They were first discovered in the budding yeast S.
cerevisiae as a set of genes (CDC3, CDC10, CDC11 and
CDC12) required for normal bud morphology. Septins are
also present in metazoan cells, where they are required
for cytokinesis in some systems, and implicated in a
variety of other processes involving organization of the
cell cortex and exocytosis. In humans, 12 septin genes
generate dozens of polypeptides, many of which comprise
heterooligomeric complexes. Since septin mutants are
commonly defective in cytokinesis and formation of the
neck formation of the neck filaments/septin rings,
septins have been considered to be the primary
constituents of the neck filaments. Septins belong to
the GTPase superfamily for their conserved GTPase motifs
and enzymatic activities.
Length = 275
Score = 28.7 bits (65), Expect = 0.21
Identities = 11/26 (42%), Positives = 13/26 (50%), Gaps = 2/26 (7%)
Query: 35 KDGAISGVLYFITPT--WEKLLDIQA 58
D + LYFI PT K LDI+
Sbjct: 110 PDTRVHCCLYFIPPTGHGLKPLDIEF 135
>gnl|CDD|212042 cd10334, SLC6sbd_u1, uncharacterized bacterial and archaeal solute
carrier 6 subfamily; solute-binding domain. SLC6
proteins (also called the sodium- and chloride-dependent
neurotransmitter transporter family or Na+/Cl--dependent
transporter family) include neurotransmitter
transporters (NTTs): these are sodium- and
chloride-dependent plasma membrane transporters for the
monoamine neurotransmitters serotonin
(5-hydroxytryptamine), dopamine, and norepinephrine, and
the amino acid neurotransmitters GABA and glycine. These
NTTs are widely expressed in the mammalian brain,
involved in regulating neurotransmitter signaling and
homeostasis, and the target of a range of therapeutic
drugs for the treatment of psychiatric diseases.
Bacterial members of the SLC6 family include the LeuT
amino acid transporter.
Length = 480
Score = 28.6 bits (65), Expect = 0.25
Identities = 9/22 (40%), Positives = 11/22 (50%)
Query: 36 DGAISGVLYFITPTWEKLLDIQ 57
GA G+ TP W LLD +
Sbjct: 195 PGAADGLNALFTPDWSALLDPK 216
>gnl|CDD|212077 cd11508, SLC6sbd_GAT3, Na(+)- and Cl(-)-dependent GABA
transporter 3; solute-binding domain. This family
includes human GAT3 (hGAT3) a high-affinity transporter
of gamma-aminobutyric acid (GABA). GABA is the main
inhibitory neurotransmitter within the mammalian CNS.
hGAT3 is encoded by the SLC6A11 gene, and is similar to
mouse GAT4, and rat GAT3/GATB. GAT3 is expressed
primarily in the glia of the brain, and is a potential
drug target for antiepileptic drugs. This subgroup
belongs to the solute carrier 6 (SLC6) transporter
family.
Length = 542
Score = 27.6 bits (61), Expect = 0.56
Identities = 13/29 (44%), Positives = 18/29 (62%), Gaps = 1/29 (3%)
Query: 6 GKPMYFLELAVGQFGGVGPLGLW-NCCPI 33
G P++FLE A+GQF G + W CP+
Sbjct: 52 GIPVFFLETALGQFTSEGGITCWRKVCPL 80
>gnl|CDD|227352 COG5019, CDC3, Septin family protein [Cell division and chromosome
partitioning / Cytoskeleton].
Length = 373
Score = 26.5 bits (59), Expect = 1.2
Identities = 13/26 (50%), Positives = 15/26 (57%), Gaps = 2/26 (7%)
Query: 35 KDGAISGVLYFITPTWE--KLLDIQA 58
KD + LYFI PT K LDI+A
Sbjct: 130 KDTRVHACLYFIRPTGHGLKPLDIEA 155
>gnl|CDD|212076 cd11507, SLC6sbd_GAT2, Na(+)- and Cl(-)-dependent GABA
transporter 2; solute-binding domain. This family
includes human GAT2 (hGAT2) which transports
gamma-aminobutyric acid (GABA). GABA is the main
inhibitory neurotransmitter within the mammalian CNS.
hGAT2 is encoded by the SLC6A13 gene, and is similar to
mouse GAT-3, and rat GAT2. hGAT2 is expressed in brain,
kidney, lung, and testis. hGAT2 is a potential drug
target for treatment of epilepsy. This subgroup belongs
to the solute carrier 6 (SLC6) transporter family.
Length = 544
Score = 26.4 bits (58), Expect = 1.4
Identities = 13/33 (39%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
Query: 2 LVLAGKPMYFLELAVGQFGGVGPLGLW-NCCPI 33
L G P++FLE A+GQ+ G + W CP+
Sbjct: 47 LFTCGIPVFFLETALGQYTSQGGVTCWRKICPL 79
>gnl|CDD|180433 PRK06157, PRK06157, acetyl-CoA acetyltransferase; Validated.
Length = 398
Score = 25.8 bits (57), Expect = 2.5
Identities = 10/16 (62%), Positives = 14/16 (87%), Gaps = 1/16 (6%)
Query: 23 GPLGLWNCCPIAKDGA 38
GPLGL++CC ++ DGA
Sbjct: 206 GPLGLFDCCGVS-DGA 220
>gnl|CDD|238425 cd00829, SCP-x_thiolase, Thiolase domain associated with sterol
carrier protein (SCP)-x isoform and related proteins;
SCP-2 has multiple roles in intracellular lipid
circulation and metabolism. The N-terminal presequence
in the SCP-x isoform represents a peroxisomal
3-ketacyl-Coa thiolase specific for branched-chain acyl
CoAs, which is proteolytically cleaved from the sterol
carrier protein.
Length = 375
Score = 25.3 bits (56), Expect = 3.9
Identities = 9/17 (52%), Positives = 12/17 (70%), Gaps = 1/17 (5%)
Query: 22 VGPLGLWNCCPIAKDGA 38
PL L +CCP++ DGA
Sbjct: 193 ADPLRLLDCCPVS-DGA 208
>gnl|CDD|223805 COG0733, COG0733, Na+-dependent transporters of the SNF family
[General function prediction only].
Length = 439
Score = 24.5 bits (54), Expect = 6.3
Identities = 9/26 (34%), Positives = 14/26 (53%)
Query: 1 MLVLAGKPMYFLELAVGQFGGVGPLG 26
L+L G P+ E A+G+ G +G
Sbjct: 50 FLLLVGIPLLLAEFAIGRRGRKNAVG 75
>gnl|CDD|178163 PLN02548, PLN02548, adenosine kinase.
Length = 332
Score = 24.7 bits (54), Expect = 6.7
Identities = 11/26 (42%), Positives = 15/26 (57%)
Query: 53 LLDIQAVCPQSGLFVYESRQDNGHLS 78
LLDI AV Q L Y+ + +N L+
Sbjct: 5 LLDISAVVDQDFLDKYDVKLNNAILA 30
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.324 0.145 0.476
Gapped
Lambda K H
0.267 0.0738 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 3,959,707
Number of extensions: 308364
Number of successful extensions: 222
Number of sequences better than 10.0: 1
Number of HSP's gapped: 222
Number of HSP's successfully gapped: 51
Length of query: 78
Length of database: 10,937,602
Length adjustment: 47
Effective length of query: 31
Effective length of database: 8,852,964
Effective search space: 274441884
Effective search space used: 274441884
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 53 (24.2 bits)