RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy206
(78 letters)
>2a65_A Leutaa, Na(+):neurotransmitter symporter (SNF family); membrane
protein, transport protein; HET: BOG; 1.65A {Aquifex
aeolicus} SCOP: f.54.1.1 PDB: 2q6h_A* 2q72_A* 2qb4_A*
2qei_A* 3f3a_A* 3f3c_A* 3f3d_A* 3f3e_A* 3f48_A* 3f4i_A*
3f4j_A* 3usg_A* 3usi_A 3usj_A 3usk_A 3usl_A* 3usm_A*
3uso_A 3usp_A* 3qs5_A* ...
Length = 519
Score = 25.8 bits (57), Expect = 1.4
Identities = 8/28 (28%), Positives = 11/28 (39%)
Query: 32 PIAKDGAISGVLYFITPTWEKLLDIQAV 59
A G+ + TP +EKL D
Sbjct: 217 ETPNGTAADGLNFLWTPDFEKLKDPGVW 244
Score = 23.9 bits (52), Expect = 7.6
Identities = 9/26 (34%), Positives = 16/26 (61%)
Query: 1 MLVLAGKPMYFLELAVGQFGGVGPLG 26
+L G P+ ++E A+G++GG G
Sbjct: 50 AFLLVGIPLMWIEWAMGRYGGAQGHG 75
>2cp5_A Restin; microtubule binding, cytoskeleton associated protein,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
b.34.10.1
Length = 141
Score = 24.5 bits (53), Expect = 4.1
Identities = 9/32 (28%), Positives = 13/32 (40%), Gaps = 12/32 (37%)
Query: 36 DGAISGVLYFITPTWEKLLDIQAVCPQSGLFV 67
DG+++GV YF P G+F
Sbjct: 107 DGSVAGVRYFQCE------------PLKGIFT 126
>2coz_A CAP350, centrosome-associated protein 350; microtubule binding,
cytoskeleton associated protein, structural genomics,
NPPSFA; NMR {Homo sapiens} SCOP: b.34.10.1
Length = 122
Score = 24.1 bits (52), Expect = 4.2
Identities = 6/32 (18%), Positives = 10/32 (31%), Gaps = 12/32 (37%)
Query: 36 DGAISGVLYFITPTWEKLLDIQAVCPQSGLFV 67
+G G+ YF + G+F
Sbjct: 74 NGTYDGIAYFECK------------EKHGIFA 93
>2coy_A Dynactin-1; microtubule binding, cytoskeleton associated protein,
P150- glued, DAP-150, structural genomics, NPPSFA; NMR
{Homo sapiens} SCOP: b.34.10.1
Length = 112
Score = 24.0 bits (52), Expect = 4.8
Identities = 9/36 (25%), Positives = 13/36 (36%), Gaps = 12/36 (33%)
Query: 36 DGAISGVLYFITPTWEKLLDIQAVCPQSGLFVYESR 71
DG + G YF G+FV +S+
Sbjct: 77 DGTVQGRKYFTCD------------EGHGIFVRQSQ 100
>1whg_A Tubulin specific chaperone B; microtubule binding, cytoskeleton
associated protein, ckapi, structural genomics; NMR
{Mus musculus} SCOP: b.34.10.1
Length = 113
Score = 23.7 bits (51), Expect = 6.7
Identities = 8/32 (25%), Positives = 12/32 (37%), Gaps = 12/32 (37%)
Query: 36 DGAISGVLYFITPTWEKLLDIQAVCPQSGLFV 67
DG+++G YF + G FV
Sbjct: 79 DGSVNGKRYFECQ------------AKYGAFV 98
>3rdv_A CAP-Gly domain-containing linker protein 1; cytoskeletal protein,
CAP Gly protein complex, structural PR; HET: BME; 1.75A
{Homo sapiens} PDB: 2qk0_A
Length = 72
Score = 22.9 bits (50), Expect = 7.2
Identities = 9/32 (28%), Positives = 13/32 (40%), Gaps = 12/32 (37%)
Query: 36 DGAISGVLYFITPTWEKLLDIQAVCPQSGLFV 67
DG+++GV YF P G+F
Sbjct: 45 DGSVAGVRYFQCE------------PLKGIFT 64
>2cow_A Kinesin-like protein KIF13B; microtubule binding, cytoskeleton
associated protein, KIAA0639, kinesin-like protein
gakin, structural genomics; NMR {Homo sapiens} SCOP:
b.34.10.1
Length = 100
Score = 23.6 bits (51), Expect = 7.3
Identities = 10/32 (31%), Positives = 11/32 (34%), Gaps = 12/32 (37%)
Query: 36 DGAISGVLYFITPTWEKLLDIQAVCPQSGLFV 67
DG+I G YF P GL V
Sbjct: 66 DGSIGGKQYFRCN------------PGYGLLV 85
>1whj_A 1700024K14RIK, riken cDNA 1700024K14; structural genomics, riken
structural genomics/proteomics initiative, RSGI,
unknown function; NMR {Mus musculus} SCOP: b.34.10.1
Length = 102
Score = 23.6 bits (51), Expect = 7.4
Identities = 7/32 (21%), Positives = 12/32 (37%), Gaps = 12/32 (37%)
Query: 36 DGAISGVLYFITPTWEKLLDIQAVCPQSGLFV 67
+G++ V YF P+ G+F
Sbjct: 67 NGSVGRVQYFKCA------------PKYGIFA 86
>2e3i_A Restin; CAP-Gly, cytoplasmic linker, tubulin binding, structural
protein; 2.00A {Homo sapiens} SCOP: b.34.10.1
Length = 86
Score = 23.1 bits (50), Expect = 7.8
Identities = 9/32 (28%), Positives = 13/32 (40%), Gaps = 12/32 (37%)
Query: 36 DGAISGVLYFITPTWEKLLDIQAVCPQSGLFV 67
DG+++GV YF P G+F
Sbjct: 45 DGSVAGVRYFQCE------------PLKGIFT 64
>2cp0_A Clipr-59 protein, clipr59; microtubule binding, cytoskeleton
associated protein, structural genomics, NPPSFA; NMR
{Homo sapiens} SCOP: b.34.10.1
Length = 95
Score = 23.1 bits (50), Expect = 8.1
Identities = 12/32 (37%), Positives = 15/32 (46%), Gaps = 12/32 (37%)
Query: 36 DGAISGVLYFITPTWEKLLDIQAVCPQSGLFV 67
DG++ GV YFI P P+ GLF
Sbjct: 59 DGSVGGVRYFICP------------PKQGLFA 78
>1lpl_A Hypothetical 25.4 kDa protein F53F4.3 in chromosome V; structural
genomics, CAP-Gly domain, cytoskeleton, tubulin, PSI;
1.77A {Caenorhabditis elegans} SCOP: b.34.10.1 PDB:
1tov_A
Length = 95
Score = 23.1 bits (50), Expect = 8.1
Identities = 10/32 (31%), Positives = 14/32 (43%), Gaps = 12/32 (37%)
Query: 36 DGAISGVLYFITPTWEKLLDIQAVCPQSGLFV 67
DG+++GV YF P+ G FV
Sbjct: 58 DGSVAGVRYFDCD------------PKYGGFV 77
>2z0w_A CAP-Gly domain-containing linker protein 4; alternative splicing,
ANK repeat, protein binding, structural genomics,
NPPSFA; 2.50A {Homo sapiens}
Length = 96
Score = 23.1 bits (50), Expect = 8.3
Identities = 9/32 (28%), Positives = 13/32 (40%), Gaps = 12/32 (37%)
Query: 36 DGAISGVLYFITPTWEKLLDIQAVCPQSGLFV 67
DG++ GV YF P+ G+F
Sbjct: 53 DGSVGGVQYFSCS------------PRYGIFA 72
>1txq_A Dynactin 1; protein complex, structural protein/protein binding
complex; 1.80A {Homo sapiens} SCOP: b.34.10.1 PDB:
2hqh_A 2hkq_B 2hkn_A 2pzo_A 3e2u_A 2hl5_C 2hl3_A 3tq7_P
Length = 93
Score = 23.1 bits (50), Expect = 8.7
Identities = 8/32 (25%), Positives = 10/32 (31%), Gaps = 12/32 (37%)
Query: 36 DGAISGVLYFITPTWEKLLDIQAVCPQSGLFV 67
DG + G YF G+FV
Sbjct: 56 DGTVQGRKYFTCD------------EGHGIFV 75
>2e3h_A Restin; CAP-Gly, cytoplasmic linker, tubulin binding, structural
protein; 1.45A {Homo sapiens} SCOP: b.34.10.1 PDB:
2e4h_A
Length = 90
Score = 23.1 bits (50), Expect = 9.0
Identities = 10/32 (31%), Positives = 13/32 (40%), Gaps = 12/32 (37%)
Query: 36 DGAISGVLYFITPTWEKLLDIQAVCPQSGLFV 67
DGA++G YF P+ GLF
Sbjct: 44 DGAVAGTRYFQCQ------------PKYGLFA 63
>2cp2_A CLIP-115, KIAA0291; microtubule binding, cytoskeleton associated
protein, CYLN2, structural genomics, NPPSFA; NMR {Homo
sapiens} SCOP: b.34.10.1 PDB: 2cp7_A
Length = 95
Score = 23.1 bits (50), Expect = 9.7
Identities = 10/32 (31%), Positives = 12/32 (37%), Gaps = 12/32 (37%)
Query: 36 DGAISGVLYFITPTWEKLLDIQAVCPQSGLFV 67
DGA+ GV YF P G+F
Sbjct: 61 DGAVGGVRYFECP------------ALQGIFT 80
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.324 0.145 0.476
Gapped
Lambda K H
0.267 0.0781 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,214,039
Number of extensions: 58164
Number of successful extensions: 71
Number of sequences better than 10.0: 1
Number of HSP's gapped: 71
Number of HSP's successfully gapped: 21
Length of query: 78
Length of database: 6,701,793
Length adjustment: 47
Effective length of query: 31
Effective length of database: 5,389,506
Effective search space: 167074686
Effective search space used: 167074686
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 51 (23.3 bits)