RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy206
         (78 letters)



>d2a65a1 f.54.1.1 (A:5-513) Na(+):neurotransmitter symporter
          homologue LeuT {Aquifex aeolicus [TaxId: 63363]}
          Length = 509

 Score = 35.9 bits (82), Expect = 1e-04
 Identities = 9/29 (31%), Positives = 16/29 (55%)

Query: 1  MLVLAGKPMYFLELAVGQFGGVGPLGLWN 29
            +L G P+ ++E A+G++GG    G   
Sbjct: 46 AFLLVGIPLMWIEWAMGRYGGAQGHGTTP 74


>d1q6wa_ d.38.1.4 (A:) Monoamine oxidase regulatory protein
          {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}
          Length = 151

 Score = 24.4 bits (52), Expect = 1.6
 Identities = 5/14 (35%), Positives = 9/14 (64%)

Query: 5  AGKPMYFLELAVGQ 18
          A  P+YF  + +G+
Sbjct: 1  ARNPIYFESIQIGE 14


>d2fx0a2 a.121.1.1 (A:77-198) Hemolysin II regulatory protein,
          HlyIIR {Bacillus cereus [TaxId: 1396]}
          Length = 122

 Score = 23.7 bits (51), Expect = 2.8
 Identities = 6/27 (22%), Positives = 14/27 (51%)

Query: 44 YFITPTWEKLLDIQAVCPQSGLFVYES 70
           +   ++E+L +I     + G+F + S
Sbjct: 44 PYFIGSFEQLKEILQEGEKQGVFHFFS 70


>d1i8ya_ g.3.16.1 (A:) N-terminal domain of granulin-1 {Carp
          (Cyprinus carpio) [TaxId: 7962]}
          Length = 28

 Score = 21.5 bits (45), Expect = 4.8
 Identities = 5/13 (38%), Positives = 8/13 (61%)

Query: 22 VGPLGLWNCCPIA 34
          + P G+W C P +
Sbjct: 16 LSPYGVWYCSPFS 28


>d1g26a_ g.3.16.1 (A:) N-terminal domain of granulin-1 {Human
          (Homo sapiens) [TaxId: 9606]}
          Length = 31

 Score = 21.1 bits (44), Expect = 8.9
 Identities = 6/12 (50%), Positives = 7/12 (58%)

Query: 24 PLGLWNCCPIAK 35
          P G W CCP  +
Sbjct: 20 PSGAWGCCPFTQ 31


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.324    0.145    0.476 

Gapped
Lambda     K      H
   0.267   0.0609    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 300,307
Number of extensions: 11029
Number of successful extensions: 15
Number of sequences better than 10.0: 1
Number of HSP's gapped: 15
Number of HSP's successfully gapped: 6
Length of query: 78
Length of database: 2,407,596
Length adjustment: 45
Effective length of query: 33
Effective length of database: 1,789,746
Effective search space: 59061618
Effective search space used: 59061618
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 47 (22.1 bits)