BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy2060
(193 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1PZ8|A Chain A, Modulation Of Agrin Function By Alternative Splicing And
Ca2+ Binding
pdb|1PZ8|B Chain B, Modulation Of Agrin Function By Alternative Splicing And
Ca2+ Binding
pdb|1PZ8|C Chain C, Modulation Of Agrin Function By Alternative Splicing And
Ca2+ Binding
pdb|1PZ8|D Chain D, Modulation Of Agrin Function By Alternative Splicing And
Ca2+ Binding
pdb|1PZ9|A Chain A, Modulation Of Agrin Function By Alternative Splicing And
Ca2+ Binding
pdb|1PZ9|B Chain B, Modulation Of Agrin Function By Alternative Splicing And
Ca2+ Binding
Length = 201
Score = 38.9 bits (89), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 31/58 (53%), Gaps = 2/58 (3%)
Query: 126 FPALKQRNRLHIKLQFSTLHDSGLLLYNGRYNERHDFIALELTDSGRSVQFSWSLGSE 183
PA K H +L T GL+L++G+ ER D+IAL + D VQ + LGS+
Sbjct: 38 IPAEKALQSNHFELSIKTEATQGLILWSGKGLERSDYIALAIVDG--FVQMMYDLGSK 93
>pdb|3V64|A Chain A, Crystal Structure Of Agrin And Lrp4
pdb|3V64|B Chain B, Crystal Structure Of Agrin And Lrp4
pdb|3V65|A Chain A, Crystal Structure Of Agrin And Lrp4 Complex
pdb|3V65|C Chain C, Crystal Structure Of Agrin And Lrp4 Complex
Length = 191
Score = 38.5 bits (88), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 31/58 (53%), Gaps = 2/58 (3%)
Query: 126 FPALKQRNRLHIKLQFSTLHDSGLLLYNGRYNERHDFIALELTDSGRSVQFSWSLGSE 183
PA K H +L T GL+L+ G+ ER D++AL + D +Q S+ LGS+
Sbjct: 28 IPAEKALQSNHFELSLRTEATQGLVLWIGKAAERADYMALAIVDG--HLQLSYDLGSQ 83
>pdb|1PZ7|A Chain A, Modulation Of Agrin Function By Alternative Splicing And
Ca2+ Binding
pdb|1PZ7|B Chain B, Modulation Of Agrin Function By Alternative Splicing And
Ca2+ Binding
Length = 204
Score = 37.4 bits (85), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 34/67 (50%), Gaps = 5/67 (7%)
Query: 124 LTFPALKQRNRL---HIKLQFSTLHDSGLLLYNGRYNERHDFIALELTDSGRSVQFSWSL 180
L +PA L H +L T GL+L++G+ ER D+IAL + D VQ + L
Sbjct: 36 LDYPAEPSEKALQSNHFELSIKTEATQGLILWSGKGLERSDYIALAIVDG--FVQMMYDL 93
Query: 181 GSEVARL 187
GS+ L
Sbjct: 94 GSKPVVL 100
>pdb|1Q56|A Chain A, Nmr Structure Of The B0 Isoform Of The Agrin G3 Domain In
Its Ca2+ Bound State
Length = 195
Score = 35.8 bits (81), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 28/48 (58%), Gaps = 2/48 (4%)
Query: 136 HIKLQFSTLHDSGLLLYNGRYNERHDFIALELTDSGRSVQFSWSLGSE 183
H +L T GL+L++G+ ER D+IAL + D VQ + LGS+
Sbjct: 42 HFELSIKTEATQGLILWSGKGLERSDYIALAIVDG--FVQMMYDLGSK 87
>pdb|1DYK|A Chain A, Laminin Alpha 2 Chain Lg4-5 Domain Pair
Length = 394
Score = 35.4 bits (80), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 23/59 (38%), Positives = 32/59 (54%), Gaps = 3/59 (5%)
Query: 124 LTFPALKQRNRLHIKLQFSTLHDSGLLLYNGRYNERHDFIALELTDSGRSVQFSWSLGS 182
+ F K +NRL I+L+ T +SGLL Y R N DF ++L + FS+ LGS
Sbjct: 48 IAFDDTKVKNRLTIELEVRTEAESGLLFYMARINHA-DFATVQLRNG--FPYFSYDLGS 103
>pdb|3R05|A Chain A, Structure Of Neurexin 1 Alpha (Domains Lns1-Lns6), With
Splice Insert Ss3
pdb|3R05|B Chain B, Structure Of Neurexin 1 Alpha (Domains Lns1-Lns6), With
Splice Insert Ss3
Length = 1254
Score = 34.7 bits (78), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 27/49 (55%), Gaps = 2/49 (4%)
Query: 120 KNSFLTFPALKQRNRLHIKLQFSTLHDSGLLLYNGRYNERHDFIALELT 168
K+S++ L+ +H+ QF T GL+LYN + +DFI +EL
Sbjct: 854 KSSYVALATLQAYTSMHLFFQFKTTSLDGLILYNS--GDGNDFIVVELV 900
>pdb|3ASI|A Chain A, Alpha-Neurexin-1 Ectodomain Fragment; Lns5-Egf3-Lns6
Length = 410
Score = 34.7 bits (78), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 27/49 (55%), Gaps = 2/49 (4%)
Query: 120 KNSFLTFPALKQRNRLHIKLQFSTLHDSGLLLYNGRYNERHDFIALELT 168
K+S++ L+ +H+ QF T GL+LYN + +DFI +EL
Sbjct: 13 KSSYVALATLQAYTSMHLFFQFKTTSLDGLILYNS--GDGNDFIVVELV 59
>pdb|3QCW|A Chain A, Structure Of Neurexin 1 Alpha (Domains Lns1-Lns6), No
Splice Inserts
pdb|3QCW|B Chain B, Structure Of Neurexin 1 Alpha (Domains Lns1-Lns6), No
Splice Inserts
Length = 1245
Score = 34.7 bits (78), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 27/49 (55%), Gaps = 2/49 (4%)
Query: 120 KNSFLTFPALKQRNRLHIKLQFSTLHDSGLLLYNGRYNERHDFIALELT 168
K+S++ L+ +H+ QF T GL+LYN + +DFI +EL
Sbjct: 845 KSSYVALATLQAYTSMHLFFQFKTTSLDGLILYNS--GDGNDFIVVELV 891
>pdb|3POY|A Chain A, Crystal Structure Of The Alpha-Neurexin-1 Ectodomain, Lns
2-6
Length = 1019
Score = 34.7 bits (78), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 27/49 (55%), Gaps = 2/49 (4%)
Query: 120 KNSFLTFPALKQRNRLHIKLQFSTLHDSGLLLYNGRYNERHDFIALELT 168
K+S++ L+ +H+ QF T GL+LYN + +DFI +EL
Sbjct: 629 KSSYVALATLQAYTSMHLFFQFKTTSLDGLILYNS--GDGNDFIVVELV 675
>pdb|1OKQ|A Chain A, Laminin Alpha 2 Chain Lg4-5 Domain Pair, Ca1 Site Mutant
Length = 394
Score = 32.7 bits (73), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 31/59 (52%), Gaps = 3/59 (5%)
Query: 124 LTFPALKQRNRLHIKLQFSTLHDSGLLLYNGRYNERHDFIALELTDSGRSVQFSWSLGS 182
+ F K +NRL I+L+ T +SGLL Y R N F ++L + FS+ LGS
Sbjct: 48 IAFDDTKVKNRLTIELEVRTEAESGLLFYMARINHAA-FATVQLRNG--FPYFSYDLGS 103
>pdb|3PVE|A Chain A, Crystal Structure Of The G2 Domain Of Agrin From Mus
Musculus
pdb|3PVE|B Chain B, Crystal Structure Of The G2 Domain Of Agrin From Mus
Musculus
Length = 189
Score = 32.7 bits (73), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 35/62 (56%), Gaps = 3/62 (4%)
Query: 133 NRLHIKLQFSTLHDSGLLLYNGRYNE-RHDFIALELTDSGRSVQFSWSLGSEVARLNRAD 191
++ +++ F SGLLLYNG+ + + DF++L L + R ++F + LG A + +
Sbjct: 34 EKMALEMVFLARGPSGLLLYNGQKTDGKGDFVSLALHN--RHLEFRYDLGKGAAIIRSKE 91
Query: 192 SI 193
I
Sbjct: 92 PI 93
>pdb|2WJS|A Chain A, Crystal Structure Of The Lg1-3 Region Of The Laminin
Alpha2 Chain
Length = 608
Score = 28.1 bits (61), Expect = 3.3, Method: Composition-based stats.
Identities = 20/65 (30%), Positives = 31/65 (47%), Gaps = 3/65 (4%)
Query: 127 PALKQRNRLHIKLQFSTLHDSGLLLYNGRYNERHDFIALELTDSGRSVQFSWSLGSEVAR 186
P +K+ + +I + T LL Y G + DF+A+E+ V F W +GS V R
Sbjct: 25 PEIKKGSYNNIVVHVKTAVADNLLFYLGS-AKFIDFLAIEMRKG--KVSFLWDVGSGVGR 81
Query: 187 LNRAD 191
+ D
Sbjct: 82 VEYPD 86
>pdb|1TEV|A Chain A, Crystal Structure Of The Human UmpCMP KINASE IN OPEN
Conformation
Length = 196
Score = 27.7 bits (60), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 20/33 (60%), Gaps = 2/33 (6%)
Query: 27 SGLPDN--EGLEKRVQTFVDGGHRTLDLLHDMG 57
SG D+ E LEKR+QT++ +DL +MG
Sbjct: 138 SGRSDDNRESLEKRIQTYLQSTKPIIDLYEEMG 170
>pdb|1QGM|A Chain A, The Solution Structure Of A 30 Residue Amino-Terminal
Domain Of The Carp Granulin-1 Protein.
pdb|1I8X|A Chain A, Semi-Automatic Structure Determination Of The Cg1 1-30
Peptide Based On Aria
Length = 30
Score = 27.7 bits (60), Expect = 4.7, Method: Composition-based stats.
Identities = 10/26 (38%), Positives = 14/26 (53%)
Query: 70 ITKSDCKGVCSPGATCSLNPSGGYIC 95
+ D +C G TCSL+P G + C
Sbjct: 1 VIHCDAATICPDGTTCSLSPYGVWYC 26
>pdb|1JW1|A Chain A, Crystallization And Structure Determination Of Goat
Lactoferrin At 4.0 Resolution: A New Form Of Packing In
Lactoferrins With A High Solvent Content In Crystals
Length = 689
Score = 26.9 bits (58), Expect = 6.3, Method: Composition-based stats.
Identities = 23/78 (29%), Positives = 30/78 (38%), Gaps = 13/78 (16%)
Query: 65 TCETDITKSDCKGVCSPGATCSLNPSGGYI--CDDCSLA-------GSYEHYDRLCRLRA 115
TC T T DC + G +L+ GGYI C L S +H C LR
Sbjct: 370 TCATASTTDDCIALVLKGEADALSLDGGYIYTAGKCGLVPVMAENRKSSKHSSLDCVLR- 428
Query: 116 RSFPKNSFLTFPALKQRN 133
P +L +K+ N
Sbjct: 429 ---PTEGYLAVAVVKKAN 443
>pdb|1I8Y|A Chain A, Semi-Automatic Structure Determination Of The Cg1 3-30
Peptide Based On Aria
Length = 28
Score = 26.9 bits (58), Expect = 7.2, Method: Composition-based stats.
Identities = 10/22 (45%), Positives = 13/22 (59%)
Query: 74 DCKGVCSPGATCSLNPSGGYIC 95
D +C G TCSL+P G + C
Sbjct: 3 DAATICPDGTTCSLSPYGVWYC 24
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.138 0.435
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,243,303
Number of Sequences: 62578
Number of extensions: 266666
Number of successful extensions: 570
Number of sequences better than 100.0: 31
Number of HSP's better than 100.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 542
Number of HSP's gapped (non-prelim): 38
length of query: 193
length of database: 14,973,337
effective HSP length: 93
effective length of query: 100
effective length of database: 9,153,583
effective search space: 915358300
effective search space used: 915358300
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 49 (23.5 bits)