RPS-BLAST 2.2.26 [Sep-21-2011]

Database: CDD.v3.10 
           44,354 sequences; 10,937,602 total letters

Searching..................................................done

Query= psy2060
         (193 letters)



>gnl|CDD|238058 cd00110, LamG, Laminin G domain; Laminin G-like domains are usually
           Ca++ mediated receptors that can have binding sites for
           steroids, beta1 integrins, heparin, sulfatides,
           fibulin-1, and alpha-dystroglycans. Proteins that
           contain LamG domains serve a variety of purposes
           including signal transduction via cell-surface steroid
           receptors, adhesion, migration and differentiation
           through mediation of cell adhesion molecules.
          Length = 151

 Score = 59.7 bits (145), Expect = 1e-11
 Identities = 31/74 (41%), Positives = 38/74 (51%), Gaps = 4/74 (5%)

Query: 115 ARSFPKNSFLTFPALK-QRNRLHIKLQFSTLHDSGLLLYNGRYNERHDFIALELTDSGRS 173
             SF  +S++  P L   R RL I   F T   +GLLLY G  N   DF+ALEL D GR 
Sbjct: 1   GVSFSGSSYVRLPTLPAPRTRLSISFSFRTTSPNGLLLYAGSQN-GGDFLALELED-GR- 57

Query: 174 VQFSWSLGSEVARL 187
           +   + LGS    L
Sbjct: 58  LVLRYDLGSGSLVL 71


>gnl|CDD|214598 smart00282, LamG, Laminin G domain. 
          Length = 132

 Score = 48.5 bits (116), Expect = 1e-07
 Identities = 23/52 (44%), Positives = 28/52 (53%), Gaps = 3/52 (5%)

Query: 136 HIKLQFSTLHDSGLLLYNGRYNERHDFIALELTDSGRSVQFSWSLGSEVARL 187
            I   F T   +GLLLY G      D++ALEL D GR +   + LGS  ARL
Sbjct: 1   SISFSFRTTSPNGLLLYAGSKG-GGDYLALELRD-GR-LVLRYDLGSGPARL 49


>gnl|CDD|215681 pfam00054, Laminin_G_1, Laminin G domain. 
          Length = 131

 Score = 42.3 bits (100), Expect = 1e-05
 Identities = 24/47 (51%), Positives = 29/47 (61%), Gaps = 3/47 (6%)

Query: 141 FSTLHDSGLLLYNGRYNERHDFIALELTDSGRSVQFSWSLGSEVARL 187
           F T   SGLLLYNG      DF+ALEL D GR ++ S+ LGS  A +
Sbjct: 1   FRTTEPSGLLLYNGT-QTERDFLALELRD-GR-LEVSYDLGSGAAVV 44


>gnl|CDD|216930 pfam02210, Laminin_G_2, Laminin G domain.  This family includes the
           Thrombospondin N-terminal-like domain, a Laminin G
           subfamily.
          Length = 124

 Score = 40.1 bits (94), Expect = 1e-04
 Identities = 20/43 (46%), Positives = 25/43 (58%), Gaps = 3/43 (6%)

Query: 141 FSTLHDSGLLLYNGRYNERHDFIALELTDSGRSVQFSWSLGSE 183
           F T   +GLLLY G  +   DF+ALEL D GR +   + LGS 
Sbjct: 1   FRTTQPNGLLLYAGGED-GLDFLALELED-GR-LVLRYDLGSG 40


>gnl|CDD|215784 pfam00200, Disintegrin, Disintegrin. 
          Length = 76

 Score = 27.6 bits (62), Expect = 1.2
 Identities = 12/43 (27%), Positives = 17/43 (39%), Gaps = 8/43 (18%)

Query: 74  DCKGVCSPGATCSLNP----SGGYICDDCSLAGSYEHYDRLCR 112
           +C+  C    TC L P    + G  CD C    +      +CR
Sbjct: 13  ECQNPCCDATTCKLKPGAQCATGPCCDQCKFKPA----GTVCR 51


>gnl|CDD|182696 PRK10748, PRK10748, flavin mononucleotide phosphatase; Provisional.
          Length = 238

 Score = 27.8 bits (62), Expect = 3.3
 Identities = 27/85 (31%), Positives = 36/85 (42%), Gaps = 11/85 (12%)

Query: 15  VDLTNGPFQPYLSGLPD------NEGLEKRVQTFVDGGHRTLDLLH-DMGARYHWGDTCE 67
           V +TNG  QP L GL D        G   R + F D  H   + L+  +G   H GD   
Sbjct: 132 VAITNGNAQPELFGLGDYFEFVLRAGPHGRSKPFSDMYHLAAEKLNVPIGEILHVGDDLT 191

Query: 68  TDITKSDCKGVCSPGATCSLNPSGG 92
           TD+  +   G+      C +NP  G
Sbjct: 192 TDVAGAIRCGM----QACWINPENG 212


>gnl|CDD|132286 TIGR03242, arg_catab_astE, succinylglutamate desuccinylase.
           Members of this protein family are succinylglutamate
           desuccinylase, the fifth and final enzyme of the
           arginine succinyltransferase (AST) pathway for arginine
           catabolism. This model excludes the related protein
           aspartoacylase [Energy metabolism, Amino acids and
           amines].
          Length = 319

 Score = 27.3 bits (61), Expect = 5.0
 Identities = 10/44 (22%), Positives = 16/44 (36%), Gaps = 5/44 (11%)

Query: 106 HYDRLCRLRARSFPKNSFLTFPALKQRNRLHIKLQFSTLHDSGL 149
           HYD    +R     +     F  L  + R   +   + L  +GL
Sbjct: 142 HYDLHTAIRGSLHEQ-----FALLPYQGRPWDREFLTWLGAAGL 180


>gnl|CDD|112955 pfam04165, DUF401, Protein of unknown function (DUF401).  Members
           if this family are predicted to have 10 transmembrane
           regions.
          Length = 386

 Score = 27.1 bits (60), Expect = 6.9
 Identities = 8/13 (61%), Positives = 9/13 (69%)

Query: 117 SFPKNSFLTFPAL 129
            FPK+S  T PAL
Sbjct: 88  LFPKHSLWTLPAL 100


  Database: CDD.v3.10
    Posted date:  Mar 20, 2013  7:55 AM
  Number of letters in database: 10,937,602
  Number of sequences in database:  44,354
  
Lambda     K      H
   0.321    0.138    0.435 

Gapped
Lambda     K      H
   0.267   0.0715    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 9,652,140
Number of extensions: 861432
Number of successful extensions: 680
Number of sequences better than 10.0: 1
Number of HSP's gapped: 678
Number of HSP's successfully gapped: 18
Length of query: 193
Length of database: 10,937,602
Length adjustment: 92
Effective length of query: 101
Effective length of database: 6,857,034
Effective search space: 692560434
Effective search space used: 692560434
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 56 (25.4 bits)