RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy2060
(193 letters)
>1pz7_A Agrin; structural protein; 1.42A {Gallus gallus} SCOP: b.29.1.4
PDB: 1pz8_A 1pz9_A 1q56_A
Length = 204
Score = 84.1 bits (208), Expect = 1e-20
Identities = 25/81 (30%), Positives = 37/81 (45%), Gaps = 2/81 (2%)
Query: 107 YDRLCRLRARSFPKNSFLTFPALKQRNRLHIKLQFSTLHDSGLLLYNGRYNERHDFIALE 166
Y +S + P+ K H +L T GL+L++G+ ER D+IAL
Sbjct: 22 YMEYHNAVTKSPDALDYPAEPSEKALQSNHFELSIKTEATQGLILWSGKGLERSDYIALA 81
Query: 167 LTDSGRSVQFSWSLGSEVARL 187
+ D G VQ + LGS+ L
Sbjct: 82 IVD-GF-VQMMYDLGSKPVVL 100
>3v64_A Low-density lipoprotein receptor-related protein; beta propeller,
laminin-G, signaling, protein binding; HET: NAG; 2.85A
{Rattus norvegicus} PDB: 3v65_A
Length = 191
Score = 73.3 bits (180), Expect = 1e-16
Identities = 23/77 (29%), Positives = 33/77 (42%), Gaps = 2/77 (2%)
Query: 111 CRLRARSFPKNSFLTFPALKQRNRLHIKLQFSTLHDSGLLLYNGRYNERHDFIALELTDS 170
PA K H +L T GL+L+ G+ ER D++AL + D
Sbjct: 13 IEYLNAVIESELTNEIPAEKALQSNHFELSLRTEATQGLVLWIGKAAERADYMALAIVD- 71
Query: 171 GRSVQFSWSLGSEVARL 187
G +Q S+ LGS+ L
Sbjct: 72 GH-LQLSYDLGSQPVVL 87
>3asi_A Neurexin-1-alpha; beta-sandwich, cell adhesion, synapse maturation,
neuroligin glycosylation, membrane; HET: NAG; 2.30A {Bos
taurus}
Length = 410
Score = 71.6 bits (175), Expect = 4e-15
Identities = 20/68 (29%), Positives = 35/68 (51%), Gaps = 4/68 (5%)
Query: 120 KNSFLTFPALKQRNRLHIKLQFSTLHDSGLLLYNGRYNERHDFIALELTDSGRSVQFSWS 179
K+S++ L+ +H+ QF T GL+LYN + +DFI +EL G + + +
Sbjct: 13 KSSYVALATLQAYTSMHLFFQFKTTSLDGLILYNS--GDGNDFIVVELVK-GY-LHYVFD 68
Query: 180 LGSEVARL 187
LG+ +
Sbjct: 69 LGNGANLI 76
Score = 55.8 bits (134), Expect = 1e-09
Identities = 24/187 (12%), Positives = 60/187 (32%), Gaps = 17/187 (9%)
Query: 19 NGPFQPYLSGLPDNEGLEKRVQTFVDGG-----------HRTLDLLHDMGARYHWGDTCE 67
+ Y+ G+ G R DL+ D +
Sbjct: 122 DLKSDLYIGGVAKETYKSLPKLVHAKEGFQGCLASVDLNGRLPDLISDALFCNGQIERGC 181
Query: 68 TDITKSDCKGVCSPGATCSLNPSGGYICD--DCSLAGSYEHYDRLCRLRARSFPKNSFLT 125
+ + + CS C L G+ CD S +G + + ++ + ++
Sbjct: 182 EGPSTTCQEDSCSNQGVC-LQQWDGFSCDCSMTSFSGPLCNDPGTTYIFSKGGGQITYKW 240
Query: 126 FPALK-QRNRLHIKLQFSTLHDSGLLLYNGRYNERHDFIALELTDSGRSVQFSWSLGSEV 184
P + + + FST+ +L+ + D++ L + + +++G++
Sbjct: 241 PPNDRPSTRADRLAIGFSTVQKEAVLVRVDSSSGLGDYLELHIHQG--KIGVKFNVGTDD 298
Query: 185 ARLNRAD 191
+ ++
Sbjct: 299 IAIEESN 305
>2wjs_A Laminin subunit alpha-2; integrin, secreted, coiled coil,
glycoprotein, laminin EGF-like domain, extracellular
matrix, laminin G-like domain; HET: NAG; 2.80A {Mus
musculus}
Length = 608
Score = 70.5 bits (172), Expect = 1e-14
Identities = 22/74 (29%), Positives = 37/74 (50%), Gaps = 4/74 (5%)
Query: 115 ARSFPKNSFLTF-PALKQRNRLHIKLQFSTLHDSGLLLYNGRYNERHDFIALELTDSGRS 173
+ S + T+ P +K+ + +I + T LL Y G + DF+A+E+ G+
Sbjct: 12 SVSSGGDCVRTYRPEIKKGSYNNIVVHVKTAVADNLLFYLGS-AKFIDFLAIEMRK-GK- 68
Query: 174 VQFSWSLGSEVARL 187
V F W +GS V R+
Sbjct: 69 VSFLWDVGSGVGRV 82
Score = 61.6 bits (149), Expect = 1e-11
Identities = 23/108 (21%), Positives = 36/108 (33%), Gaps = 8/108 (7%)
Query: 82 GATCSLNPSGGYICDDCSLAGSYEHYDRLCRLRARSFPKNSFLTF--PALKQRNRLHIKL 139
L D G F + P N +
Sbjct: 175 NKPIGLWNFREKEGDCK---GCTVSPQVEDSEGTIQFDGEGYALVSRPIRWYPNISTVMF 231
Query: 140 QFSTLHDSGLLLYNGRYNERHDFIALELTDSGRSVQFSWSLGSEVARL 187
+F T S LL+Y + DF+++EL+D G V+ S+ LGS + +
Sbjct: 232 KFRTFSSSALLMYLAT-RDLKDFMSVELSD-GH-VKVSYDLGSGMTSV 276
Score = 54.7 bits (131), Expect = 3e-09
Identities = 21/93 (22%), Positives = 36/93 (38%), Gaps = 7/93 (7%)
Query: 97 DCSLAGSYEHYDRLCR---LRARSFPKNSFLTFPALKQRNRLHIKLQFSTLHDSGLLLYN 153
+ + Y + C + SFPK F+ A+ I L FST ++SG++L
Sbjct: 368 NILSSPDYVGVTKGCSLENVYTVSFPKPGFVELAAVSIDVGTEINLSFSTRNESGIILLG 427
Query: 154 GRYNERHDFIALELTDSGRSVQFSWSLGSEVAR 186
+ A+ L ++ S G+ R
Sbjct: 428 S--GGGQAYYAIFLNKG--RLEVHLSSGTRTMR 456
>3pve_A Agrin, AGRN protein; mRNA splicing, structural genomics, PSI-2,
protein structure initiative; 1.40A {Mus musculus}
Length = 189
Score = 68.0 bits (166), Expect = 1e-14
Identities = 21/77 (27%), Positives = 37/77 (48%), Gaps = 8/77 (10%)
Query: 117 SFPKNSFLTFPALKQ-----RNRLHIKLQFSTLHDSGLLLYNGRYNE-RHDFIALELTDS 170
F S+L L ++ +++ F SGLLLYNG+ + + DF++L L +
Sbjct: 13 DFNGFSYLELKGLHTFERDLGEKMALEMVFLARGPSGLLLYNGQKTDGKGDFVSLALHN- 71
Query: 171 GRSVQFSWSLGSEVARL 187
++F + LG A +
Sbjct: 72 RH-LEFRYDLGKGAAII 87
>3sh4_A LG3 peptide; actin disassambly, integrin alpha12 BETA1, metal
binding Pro; 1.50A {Homo sapiens} PDB: 3sh5_A
Length = 195
Score = 67.2 bits (164), Expect = 2e-14
Identities = 28/83 (33%), Positives = 36/83 (43%), Gaps = 11/83 (13%)
Query: 114 RARSFPKNSFLTFPAL-----KQRNRLHIKLQFSTLHDSGLLLYNGRY----NERHDFIA 164
F + FL FP I+L+ T SGLLL+ G + DFI+
Sbjct: 6 YGAYFHDDGFLAFPGHVFSRSLPEVPETIELEVRTSTASGLLLWQGVEVGEAGQGKDFIS 65
Query: 165 LELTDSGRSVQFSWSLGSEVARL 187
L L D G + F + LGS ARL
Sbjct: 66 LGLQD-GH-LVFRYQLGSGEARL 86
>2h0b_A Neurexin-1-alpha; B-sandwich, cell adhesion; 2.10A {Bos taurus}
Length = 184
Score = 65.2 bits (159), Expect = 1e-13
Identities = 18/74 (24%), Positives = 32/74 (43%), Gaps = 8/74 (10%)
Query: 117 SFPKNSFLTFPALKQR---NRLHIKLQFSTLHDSGLLLYNGRYNERHDFIALELTDSGRS 173
+F + + + + + I L F TL +GL+L+ G+ D++ L L + G
Sbjct: 9 TFKGSEYFCYDLSQNPIQSSSDEITLSFKTLQRNGLMLHTGK---SADYVNLALKN-GA- 63
Query: 174 VQFSWSLGSEVARL 187
V +LGS
Sbjct: 64 VSLVINLGSGAFEA 77
>2jd4_A Laminin subunit alpha-1; basement membrane protein, metal binding
protein; 1.9A {Mus musculus}
Length = 383
Score = 67.3 bits (164), Expect = 1e-13
Identities = 23/92 (25%), Positives = 41/92 (44%), Gaps = 8/92 (8%)
Query: 98 CSLAGSYEHYDRLCRLRARSFPKNSFLTFPALKQ--RNRLHIKLQFSTLHDSGLLLYNGR 155
C++ + + + +NS L P + R RL ++L T SGL+ Y
Sbjct: 9 CAVDTAPGYVAGAHQF---GLSQNSHLVLPLQQSDVRKRLQVQLSIRTFASSGLIYYVAH 65
Query: 156 YNERHDFIALELTDSGRSVQFSWSLGSEVARL 187
N + D+ L+L + GR + F + LG ++
Sbjct: 66 QN-QMDYATLQLQE-GR-LHFMFDLGKGRTKV 94
Score = 45.0 bits (106), Expect = 5e-06
Identities = 20/74 (27%), Positives = 30/74 (40%), Gaps = 6/74 (8%)
Query: 111 CRLRARSFPKNSF--LTFPALKQRNRLHIKLQFSTLHDSGLLLYNGRYNERHDFIALELT 168
F + + L K R L I L+F T +G+LL + + D I LE+
Sbjct: 196 VAQEGTFFEGSGYAALVKEGYKVRLDLQITLEFRTTSKNGVLLGIS--SAKVDAIGLEIV 253
Query: 169 DSGRSVQFSWSLGS 182
D V F + G+
Sbjct: 254 DG--KVLFHVNNGA 265
>3qcw_A Neurexin-1-alpha; synaptic adhesion molecule, cell adhesion; HET:
NAG; 2.65A {Bos taurus} PDB: 3r05_A* 3poy_A*
Length = 1245
Score = 66.0 bits (160), Expect = 4e-13
Identities = 21/78 (26%), Positives = 30/78 (38%), Gaps = 4/78 (5%)
Query: 117 SFP--KNSFLTFPALKQRNRLHIKLQFSTLHDSGLLLYNGRYNERHDFIALELTDSGRSV 174
FP + + FP + Q T GL+LY DF+ L LT GR +
Sbjct: 2 EFPGAEGQWTRFPKWNACCESEMSFQLKTRSARGLVLYFDD-EGFCDFLELILTRGGR-L 59
Query: 175 QFSWSLGSEVARLNRADS 192
Q S+S+ D+
Sbjct: 60 QLSFSIFCAEPATLLTDT 77
Score = 64.9 bits (157), Expect = 1e-12
Identities = 27/137 (19%), Positives = 48/137 (35%), Gaps = 10/137 (7%)
Query: 54 HDMGARYHWGDTCETDITKSDCKGVCSPGATCSLNPSGGYICDDCSLAGSYEHYDRLCRL 113
D G + + + GVC G CS +CD + +
Sbjct: 174 LDDEPPNSGGGSPCEAGEEGEG-GVCLNGGVCS-VVDDQAVCDCSRTGFRGKDCSQGKEE 231
Query: 114 RARSFPKNSFLTFPALKQRNR---LHIKLQFSTLHDSGLLLYNGRYNERHDFIALELTDS 170
+F + + + + + I L F TL +GL+L+ G + D++ L L +
Sbjct: 232 YIATFKGSEYFCYDLSQNPIQSSSDEITLSFKTLQRNGLMLHTG---KSADYVNLALKNG 288
Query: 171 GRSVQFSWSLGSEVARL 187
+V +LGS
Sbjct: 289 --AVSLVINLGSGAFEA 303
Score = 64.9 bits (157), Expect = 1e-12
Identities = 26/154 (16%), Positives = 56/154 (36%), Gaps = 8/154 (5%)
Query: 36 EKRVQTFVDGGHRTLDLLHDMGARYHWGDTCETDITK-SDCKGVCSPGATCSLNPSGGYI 94
++ + + G H L+ + + + + ++
Sbjct: 761 QQAMTGQMAGDHTRLEFHNIETGIITERRYLSSVPSNFIGHLQSLTFNGMAYIDLCKNGD 820
Query: 95 CDDCSLAGSYEHYDRLCRLRARSFP-KNSFLTFPALKQRNRLHIKLQFSTLHDSGLLLYN 153
D C L + + + +F K+S++ L+ +H+ QF T GL+LYN
Sbjct: 821 IDYCELNARFGFRNIIAD--PVTFKTKSSYVALATLQAYTSMHLFFQFKTTSLDGLILYN 878
Query: 154 GRYNERHDFIALELTDSGRSVQFSWSLGSEVARL 187
+ +DFI +EL + + + LG+ +
Sbjct: 879 S--GDGNDFIVVELVKG--YLHYVFDLGNGANLI 908
Score = 57.9 bits (139), Expect = 3e-10
Identities = 22/127 (17%), Positives = 41/127 (32%), Gaps = 17/127 (13%)
Query: 76 KGVCSPGATCSLNPSGGYICDDCSLA----GSYEHYDRLCRLRARSFPKNSFLTFPALKQ 131
K V L S D + +++ + SF++ P
Sbjct: 381 KEVVYKNNDVRLELSRLAKQGDPKMKIHGVVAFKCENVATLDPITFETPESFISLPKWNA 440
Query: 132 RNRLHIKLQFSTLHDSGLLLYNG-----------RYNERHDFIALELTDSGRSVQFSWSL 180
+ I F T +GL+L++ + DF A+E+ D G + +
Sbjct: 441 KKTGSISFDFRTTEPNGLILFSHGKPRHQKDAKHPQMIKVDFFAIEMLD-GH-LYLLLDM 498
Query: 181 GSEVARL 187
GS ++
Sbjct: 499 GSGTIKI 505
Score = 51.4 bits (122), Expect = 4e-08
Identities = 17/118 (14%), Positives = 40/118 (33%), Gaps = 8/118 (6%)
Query: 79 CSPGATCSLNPSGGYICDDCSLAGSYEHYDRLCRLRARSFPKNSFLTFPALKQ----RNR 134
CS C L G+ CD CS+ +T+
Sbjct: 1025 CSNQGVC-LQQWDGFSCD-CSMTSFSGPLCNDPGTTYIFSKGGGQITYKWPPNDRPSTRA 1082
Query: 135 LHIKLQFSTLHDSGLLLYNGRYNERHDFIALELTDSGRSVQFSWSLGSEVARLNRADS 192
+ + FST+ +L+ + D++ L + + +++G++ + +++
Sbjct: 1083 DRLAIGFSTVQKEAVLVRVDSSSGLGDYLELHIHQG--KIGVKFNVGTDDIAIEESNA 1138
Score = 48.7 bits (115), Expect = 4e-07
Identities = 24/152 (15%), Positives = 52/152 (34%), Gaps = 4/152 (2%)
Query: 42 FVDGGHRTLDLLHDMGARYHWGDTCETDITKSDCKGVCSPGATCSLNPSGGYICDDCSLA 101
F+DG + + + ++ + +C + K C C + Y+CD
Sbjct: 590 FIDGQSKDIRQMAEVQSTAGVKPSCSRETAKPCLSNPCKNNGMCR-DGWNRYVCDCSGTG 648
Query: 102 GSYEHYDRLCRLRARSFPKNSFLTFPALKQRNRLHIKLQFSTLHDSGLLLYNGRYNERHD 161
+R + + + P + + L+F + G+L+ + D
Sbjct: 649 YLGRSCEREATVLSYDGSMFMKIQLPVVMHTEAEDVSLRFRSQRAYGILMATT-SRDSAD 707
Query: 162 FIALELTDSGRSVQFSWSLGSEVARLNRADSI 193
+ LEL V+ + +LG L ++
Sbjct: 708 TLRLELDA--GRVKLTVNLGKGPETLFAGYNL 737
>1dyk_A Laminin alpha 2 chain; metal binding protein; 2.0A {Mus musculus}
SCOP: b.29.1.4 b.29.1.4 PDB: 1okq_A 1qu0_A
Length = 394
Score = 62.3 bits (151), Expect = 5e-12
Identities = 26/73 (35%), Positives = 36/73 (49%), Gaps = 5/73 (6%)
Query: 117 SFPKNSFL--TFPALKQRNRLHIKLQFSTLHDSGLLLYNGRYNERHDFIALELTDSGRSV 174
+NS + F K +NRL I+L+ T +SGLL Y R N DF ++L + G
Sbjct: 39 GLSRNSHIAIAFDDTKVKNRLTIELEVRTEAESGLLFYMARIN-HADFATVQLRN-GF-P 95
Query: 175 QFSWSLGSEVARL 187
FS+ LGS
Sbjct: 96 YFSYDLGSGDTST 108
Score = 43.8 bits (103), Expect = 1e-05
Identities = 14/66 (21%), Positives = 27/66 (40%), Gaps = 5/66 (7%)
Query: 118 FPKNSFLTF-PALKQRNRLHIKLQFSTLHDSGLLLYNGRYNERHDFIALELTDSGRSVQF 176
F F K L ++ +F T +G+LL +++ D + +E+ D + F
Sbjct: 216 FDGTGFAKAVGGFKVGLDLLVEFEFRTTRPTGVLLGVS--SQKMDGMGIEMIDE--KLMF 271
Query: 177 SWSLGS 182
G+
Sbjct: 272 HVDNGA 277
>2r16_A Neurexin-1-alpha; beta-sandwich, cell adhesion, splicing; 1.04A
{Bos taurus}
Length = 182
Score = 58.7 bits (142), Expect = 3e-11
Identities = 17/75 (22%), Positives = 31/75 (41%), Gaps = 5/75 (6%)
Query: 115 ARSFPKNSFLT--FPALKQRNRLHIKLQFSTLHDSGLLLYNGRYNERHDFIALELTDSGR 172
S+ + F+ P + + L+F + G+L+ + D + LEL GR
Sbjct: 7 VLSYDGSMFMKIQLPVVMHTEAEDVSLRFRSQRAYGILMATT-SRDSADTLRLELDA-GR 64
Query: 173 SVQFSWSLGSEVARL 187
V+ + +LG L
Sbjct: 65 -VKLTVNLGKGPETL 78
>1f5f_A SHBG, sex hormone-binding globulin; jellyroll, signaling protein;
HET: DHT; 1.70A {Homo sapiens} SCOP: b.29.1.4 PDB:
1lhw_A* 1lho_A* 1lhn_A* 1lhv_A* 1lhu_A*
Length = 205
Score = 57.2 bits (138), Expect = 1e-10
Identities = 13/79 (16%), Positives = 26/79 (32%), Gaps = 6/79 (7%)
Query: 111 CRLRARSFPKN--SFLTFPALKQRNRLHIKLQFSTLHDSGLLLYNGRYNERHDFIALELT 168
+ + + +TF L + + + T G++ Y N + D+ L L
Sbjct: 15 AVHLSNGPGQEPIAVMTFD-LTKITKTSSSFEVRTWDPEGVIFYGDT-NPKDDWFMLGLR 72
Query: 169 DSGRSVQFSWSLGSEVARL 187
D GR + +
Sbjct: 73 D-GR-PEIQLHNHWAQLTV 89
>1h30_A GAS6, growth-arrest-specific protein; laminin G-domain protein,
vitamin K-dependent protein, AXL/SKY/MER ligand, laminin
G- like domain; 2.2A {Homo sapiens} SCOP: b.29.1.4
b.29.1.4 PDB: 2c5d_A*
Length = 422
Score = 57.9 bits (139), Expect = 2e-10
Identities = 20/111 (18%), Positives = 30/111 (27%), Gaps = 8/111 (7%)
Query: 79 CSPGATCSLNPSGGYIC-DDCSLAGSYEHYDRLCRLRARSFPKNSFLTFPALK-QRNRLH 136
G S C D R F + + Q RL
Sbjct: 8 GRGGLKLS---QDMDTCEDILPCVPFSVAKSVKSLYLGRMFSGTPVIRLRFKRLQPTRLV 64
Query: 137 IKLQFSTLHDSGLLLYNGRYNERHDFIALELTDSGRSVQFSWSLGSEVARL 187
+ F T G+LL+ G + + +I L L GR ++
Sbjct: 65 AEFDFRTFDPEGILLFAGGHQD-STWIVLALRA-GR-LELQLRYNGVGRVT 112
>3bod_A Neurexin-1-alpha; neurexin1D, LNS6, alternative splicing, calcium,
cell adhesion, EGF-like domain, glycoprotein, membrane,
metal- binding; 1.70A {Mus musculus} PDB: 2vh8_C 2xb6_C*
2wqz_C* 1c4r_A 3bop_A 3mw4_A*
Length = 178
Score = 55.3 bits (133), Expect = 4e-10
Identities = 9/81 (11%), Positives = 31/81 (38%), Gaps = 6/81 (7%)
Query: 116 RSFPKNSFLTFP----ALKQRNRLHIKLQFSTLHDSGLLLYNGRYNERHDFIALELTDSG 171
+T+ + + FST+ +L+ + D++ L + G
Sbjct: 8 IFSKGGGQITYKWPPNDRPSTRADRLAIGFSTVQKEAVLVRVDSSSGLGDYLELHIHQ-G 66
Query: 172 RSVQFSWSLGSEVARLNRADS 192
+ + +++G++ + +++
Sbjct: 67 K-IGVKFNVGTDDIAIEESNA 86
>1d2s_A SHBG, sex hormone-binding globulin; steroid transport, laminin
G-like domain, jellyroll, androgen binding protein
(ABP); HET: DHT; 1.55A {Homo sapiens} SCOP: b.29.1.4
PDB: 1kdk_A* 1kdm_A*
Length = 170
Score = 54.5 bits (131), Expect = 7e-10
Identities = 12/71 (16%), Positives = 23/71 (32%), Gaps = 4/71 (5%)
Query: 117 SFPKNSFLTFPALKQRNRLHIKLQFSTLHDSGLLLYNGRYNERHDFIALELTDSGRSVQF 176
+ +TF + + + T G++ Y N + D+ L L D GR +
Sbjct: 11 GQEPIAVMTFDLT-KITKTSSSFEVRTWDPEGVIFYGDT-NPKDDWFMLGLRD-GR-PEI 66
Query: 177 SWSLGSEVARL 187
+
Sbjct: 67 QLHNHWAQLTV 77
>2r1b_A Neurexin-1-beta, neurexin I-beta; beta-sandwich, cell adhesion,
splicing; 1.72A {Rattus norvegicus} PDB: 3mw2_A* 3b3q_E*
3mw3_A*
Length = 220
Score = 51.7 bits (123), Expect = 2e-08
Identities = 9/81 (11%), Positives = 31/81 (38%), Gaps = 6/81 (7%)
Query: 116 RSFPKNSFLTFPALKQR----NRLHIKLQFSTLHDSGLLLYNGRYNERHDFIALELTDSG 171
+T+ + + FST+ +L+ + D++ L + G
Sbjct: 14 IFSKGGGQITYKWPPNDRPSTRADRLAIGFSTVQKEAVLVRVDSSSGLGDYLELHIHQ-G 72
Query: 172 RSVQFSWSLGSEVARLNRADS 192
+ + +++G++ + +++
Sbjct: 73 K-IGVKFNVGTDDIAIEESNA 92
>2r1d_A Neurexin-1-beta, neurexin I-beta; beta-sandwich, cell adhesion,
splicing; 2.60A {Rattus norvegicus} SCOP: b.29.1.4 PDB:
3biw_E*
Length = 226
Score = 50.8 bits (121), Expect = 3e-08
Identities = 9/82 (10%), Positives = 31/82 (37%), Gaps = 6/82 (7%)
Query: 115 ARSFPKNSFLTF----PALKQRNRLHIKLQFSTLHDSGLLLYNGRYNERHDFIALELTDS 170
+T+ + + FST+ +L+ + D++ L +
Sbjct: 41 YIFSKGGGQITYKWPPNDRPSTRADRLAIGFSTVQKEAVLVRVDSSSGLGDYLELHIHQ- 99
Query: 171 GRSVQFSWSLGSEVARLNRADS 192
G+ + +++G++ + +++
Sbjct: 100 GK-IGVKFNVGTDDIAIEESNA 120
>2vj2_A Jagged-1; signalling, polymorphism, glycoprotein, extracellular,
developmental protein, notch signaling pathway, EGF,
DSL, notch, calcium, membrane; 2.50A {Homo sapiens} PDB:
2kb9_A
Length = 169
Score = 33.1 bits (76), Expect = 0.024
Identities = 10/34 (29%), Positives = 12/34 (35%)
Query: 63 GDTCETDITKSDCKGVCSPGATCSLNPSGGYICD 96
G C+ D+ C G TCS Y C
Sbjct: 124 GQLCDKDLNYCGTHQPCLNGGTCSNTGPDKYQCS 157
Score = 29.3 bits (66), Expect = 0.49
Identities = 11/41 (26%), Positives = 12/41 (29%), Gaps = 4/41 (9%)
Query: 63 GDTCETDITKSDC---KGVCSPGATCSLNPS-GGYICDDCS 99
G C I + C G C C G CD C
Sbjct: 60 GPECNRAICRQGCSPKHGSCKLPGDCRCQYGWQGLYCDKCI 100
Score = 26.6 bits (59), Expect = 4.1
Identities = 6/40 (15%), Positives = 11/40 (27%), Gaps = 5/40 (12%)
Query: 63 GDTCETDITKSDCK---GVCSPGATCSLNPSGGYICDDCS 99
G C D C + G++ +C+
Sbjct: 27 GFGCNKFCRPRDDFFGHYACDQNGNKTCME--GWMGPECN 64
>1b9w_A Protein (merozoite surface protein 1); MSP-1, candidate malaria
vaccine, surface antigen; 1.80A {Plasmodium cynomolgi}
SCOP: g.3.11.4 g.3.11.4 PDB: 2npr_A
Length = 95
Score = 30.8 bits (69), Expect = 0.091
Identities = 13/49 (26%), Positives = 19/49 (38%), Gaps = 5/49 (10%)
Query: 63 GDTCETDITKSDCK---GVCSPGATCSLNPSGGYICDDCSLAGSYEHYD 108
C CK G C+P A C +N +C C+ GS ++
Sbjct: 38 AGKC-VPAPNMTCKDKNGGCAPEAECKMNDKNEIVC-KCTKEGSEPLFE 84
>1aut_L Activated protein C; serine proteinase, plasma calcium binding,
glycoprotein, HYD hydrolase inhibitor complex, blood
clotting; HET: 0G6; 2.80A {Homo sapiens} SCOP: g.3.11.1
g.3.11.1 PDB: 3f6u_L*
Length = 114
Score = 30.5 bits (69), Expect = 0.14
Identities = 10/39 (25%), Positives = 17/39 (43%), Gaps = 1/39 (2%)
Query: 58 ARYHWGDTCETDITKSDCKGVCSPGATCSLNPSGGYICD 96
+++ GD C + C +C TC + G + CD
Sbjct: 1 SKHVDGDQCLVLPLEHPCASLCCGHGTCI-DGIGSFSCD 38
Score = 27.0 bits (60), Expect = 2.1
Identities = 9/36 (25%), Positives = 14/36 (38%), Gaps = 6/36 (16%)
Query: 63 GDTCETDITKSDCK---GVCSPGATCSLNPSGGYIC 95
G C+ +++ +C G C C L G C
Sbjct: 45 GRFCQREVSFLNCSLDNGGC--THYC-LEEVGWRRC 77
>1yo8_A Thrombospondin-2; EGF, Ca(2+)-binding domains, lectin domain,
disulfide, cell; HET: NAG MAN; 2.60A {Homo sapiens}
PDB: 2rhp_A*
Length = 634
Score = 31.5 bits (71), Expect = 0.15
Identities = 10/20 (50%), Positives = 11/20 (55%)
Query: 79 CSPGATCSLNPSGGYICDDC 98
C PGA CS P G + C C
Sbjct: 11 CFPGAQCSSFPDGSWSCGFC 30
Score = 26.9 bits (59), Expect = 5.1
Identities = 10/40 (25%), Positives = 12/40 (30%), Gaps = 6/40 (15%)
Query: 63 GDTCETDI----TKSDCKGVCSPGATCSLNPSGGYICDDC 98
G C D+ D S C N G+ C C
Sbjct: 38 GTHC-EDLDECALVPDICFSTSKVPRCV-NTQPGFHCLPC 75
>1n1i_A Merozoite surface protein-1; MSP1, malaria, surface antigen,
glycoprotein, EGF domain, cell adhesion; HET: HIS; 2.40A
{Plasmodium knowlesi strain H} SCOP: g.3.11.4 g.3.11.4
Length = 105
Score = 30.1 bits (67), Expect = 0.16
Identities = 13/47 (27%), Positives = 21/47 (44%), Gaps = 2/47 (4%)
Query: 63 GDTC-ETDITKSDCKGVCSPGATCSLNPSGGYICDDCSLAGSYEHYD 108
G C IT + G C+P A C+++ C C+ GS ++
Sbjct: 44 GGKCVPASITCEENNGGCAPEAECTMDDKKEVEC-KCTKEGSEPLFE 89
>2vj3_A Neurogenic locus notch homolog protein 1; transcription,
metal-binding, transmembrane, developmental protein,
notch signaling pathway; 2.60A {Homo sapiens} SCOP:
g.3.11.1 g.3.11.1 g.3.11.1 PDB: 1toz_A 2rqz_A* 2rr0_A
2rr2_A*
Length = 135
Score = 30.3 bits (69), Expect = 0.19
Identities = 12/35 (34%), Positives = 17/35 (48%), Gaps = 4/35 (11%)
Query: 63 GDTCETDITKSDCKGV-CSPGATCSLNPSGGYICD 96
G CE D+ ++C C ATC L+ G + C
Sbjct: 38 GPRCEIDV--NECVSNPCQNDATC-LDQIGEFQCI 69
Score = 27.9 bits (63), Expect = 1.3
Identities = 8/35 (22%), Positives = 13/35 (37%), Gaps = 4/35 (11%)
Query: 63 GDTCETDITKSDCKGV-CSPGATCSLNPSGGYICD 96
G CE + +C C C L+ + C+
Sbjct: 76 GVHCEVNT--DECASSPCLHNGRC-LDKINEFQCE 107
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 31.0 bits (69), Expect = 0.24
Identities = 26/153 (16%), Positives = 45/153 (29%), Gaps = 58/153 (37%)
Query: 36 EKRVQTFVDGGHRTLDLLHDMGARYHWGDTCETDITKSDCKGVCSPGATCSLNPSGGYIC 95
E+ VQ FV+ R Y + + SP T PS
Sbjct: 76 EEMVQKFVEEVLRI---------NYKF---------------LMSPIKTEQRQPSMMTR- 110
Query: 96 DDCSLAGSYEHY-DRLCRLRARSFPKNSFLTFPALKQRNRLHIKLQFSTLHDSGLLLYNG 154
Y DRL + F K + R + ++KL+ + L
Sbjct: 111 -------MYIEQRDRLYN-DNQVFAKYNV-------SRLQPYLKLRQA--------LLEL 147
Query: 155 RYNERHDFIALE-LTDSGRSVQFSWSLGSEVAR 186
R + ++ + SG++ + +V
Sbjct: 148 R---PAKNVLIDGVLGSGKTW-----VALDVCL 172
>1i8x_A Granulin-1; two beta-hairpin stack, cytokine; NMR {Synthetic}
SCOP: g.3.16.1 PDB: 1qgm_A 1i8y_A
Length = 30
Score = 26.9 bits (59), Expect = 0.45
Identities = 10/26 (38%), Positives = 14/26 (53%)
Query: 70 ITKSDCKGVCSPGATCSLNPSGGYIC 95
+ D +C G TCSL+P G + C
Sbjct: 1 VIHCDAATICPDGTTCSLSPYGVWYC 26
>1x7a_L Coagulation factor IX, light chain; inhibition, blood
clotting,hydrolase; HET: 187; 2.90A {Sus scrofa} SCOP:
g.3.11.1 g.3.11.1 PDB: 1pfx_L*
Length = 146
Score = 28.5 bits (64), Expect = 0.80
Identities = 6/33 (18%), Positives = 8/33 (24%), Gaps = 2/33 (6%)
Query: 63 GDTCETDITKSDCKGVCSPGATCSLNPSGGYIC 95
G CE D + C +C
Sbjct: 79 GKNCELDA--TCNIKNGRCKQFCKTGADSKVLC 109
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 28.9 bits (64), Expect = 1.2
Identities = 22/91 (24%), Positives = 25/91 (27%), Gaps = 28/91 (30%)
Query: 21 PF-QPYLSGLPD--NEGLEKR------------VQTFVDGGH-RTLD--LLH---DMGAR 59
PF L D N+ L K V DG R L + D R
Sbjct: 426 PFHSHLLVPASDLINKDLVKNNVSFNAKDIQIPVYDTFDGSDLRVLSGSISERIVDCIIR 485
Query: 60 Y--HWGDTCETDITKS-DCKGVCSPGATCSL 87
W T + T D G PG L
Sbjct: 486 LPVKWETTTQFKATHILDF-G---PGGASGL 512
Score = 28.5 bits (63), Expect = 1.8
Identities = 26/169 (15%), Positives = 48/169 (28%), Gaps = 63/169 (37%)
Query: 12 QYQV-----DLTNGPFQPYLSGLPDNEGLEKRV------------QTFVDGGHRTLDLLH 54
Y V T G + YL G G + + ++F + + +L
Sbjct: 248 HYVVTAKLLGFTPGELRSYLKGA---TGHSQGLVTAVAIAETDSWESFFVSVRKAITVLF 304
Query: 55 DMGARYH--WGDTCETDITKSDC----KGVCSPGATCSLNPSGGYICDDCSLAGSYEHYD 108
+G R + + +T D +GV SP + S + + ++ +
Sbjct: 305 FIGVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSIS----------NLTQEQVQDYVN 354
Query: 109 RLCRLRARSFPKNSFLTFPALKQRNRLHIKLQFSTLHDSGLLLYNGRYN 157
+ P ++ I S L NG N
Sbjct: 355 KTN----SHLPAGK-----------QVEI----S--------LVNGAKN 376
>2ygq_A WIF-1, WNT inhibitory factor 1; signaling protein, WNT signaling
pathway, WNT antagonist, MO cancer, glycosaminoglycan;
HET: PCF NAG FUC SCR; 3.95A {Homo sapiens}
Length = 324
Score = 28.7 bits (64), Expect = 1.3
Identities = 9/39 (23%), Positives = 13/39 (33%), Gaps = 4/39 (10%)
Query: 63 GDTCETDITKSDCK--GVCSPGATCSLNPSGGYICDDCS 99
GD C + + C G C C G+ C+
Sbjct: 271 GDLCSKPVCEPGCGAHGTCHEPNKCQCQE--GWHGRHCN 307
Score = 28.3 bits (63), Expect = 1.7
Identities = 12/39 (30%), Positives = 16/39 (41%), Gaps = 4/39 (10%)
Query: 63 GDTCETDITKSDCK--GVCSPGATCSLNPSGGYICDDCS 99
G+ CE C+ G C + C + GY D CS
Sbjct: 239 GEQCEISKCPQPCRNGGKCIGKSKCKCSK--GYQGDLCS 275
Score = 27.9 bits (62), Expect = 2.3
Identities = 10/39 (25%), Positives = 14/39 (35%), Gaps = 4/39 (10%)
Query: 63 GDTCETDITKSDCK--GVCSPGATCSLNPSGGYICDDCS 99
G CE + C G+C C P G+ +C
Sbjct: 175 GPHCEKALCTPRCMNGGLCVTPGFCICPP--GFYGVNCD 211
Score = 27.5 bits (61), Expect = 2.6
Identities = 9/34 (26%), Positives = 13/34 (38%), Gaps = 8/34 (23%)
Query: 63 GDTCETDITKSDCKGVCSPGATCSLNPSGGYICD 96
TC+ +C G C G C + IC+
Sbjct: 143 FKTCQQA----ECPGGCRNGGFC----NERRICE 168
Score = 27.1 bits (60), Expect = 3.6
Identities = 9/39 (23%), Positives = 12/39 (30%), Gaps = 4/39 (10%)
Query: 63 GDTCETDITKSDCK--GVCSPGATCSLNPSGGYICDDCS 99
G C+ + C G C C P G + C
Sbjct: 207 GVNCDKANCSTTCFNGGTCFYPGKCICPP--GLEGEQCE 243
>4at0_A 3-ketosteroid-delta4-5alpha-dehydrogenase; oxidoreductase,
dehydogenase, steroid catabolism; HET: FAD; 1.60A
{Rhodococcus jostii} PDB: 4at2_A*
Length = 510
Score = 28.4 bits (64), Expect = 1.4
Identities = 8/58 (13%), Positives = 18/58 (31%)
Query: 25 YLSGLPDNEGLEKRVQTFVDGGHRTLDLLHDMGARYHWGDTCETDITKSDCKGVCSPG 82
++ E+++ + +G + L D G + E G+ G
Sbjct: 111 FMMAALGPGADEEKITDYCEGSVEHYNWLVDCGVPFKESFWGEPGWEPPFDDGLMYSG 168
>3hh2_C Follistatin; protein-protein complex, TB domain, cystine knot
motif, TGF- fold, disulfide linked dimer, CLE PAIR of
basic residues, cytokine; HET: CIT; 2.15A {Homo sapiens}
PDB: 2b0u_C* 2p6a_D
Length = 288
Score = 28.1 bits (61), Expect = 2.1
Identities = 11/52 (21%), Positives = 15/52 (28%), Gaps = 1/52 (1%)
Query: 61 HWGDTCETDITKSDCKGV-CSPGATCSLNPSGGYICDDCSLAGSYEHYDRLC 111
G K C+ V C PG C +N C + +C
Sbjct: 52 FNGGAPNCIPCKETCENVDCGPGKKCRMNKKNKPRCVCAPDCSNITWKGPVC 103
>3k1f_M Transcription initiation factor IIB; RNA polymerase II, TFIIB,
transcription factor, DNA-binding, DNA-directed RNA
polymerase; 4.30A {Saccharomyces cerevisiae}
Length = 197
Score = 27.7 bits (61), Expect = 2.2
Identities = 9/40 (22%), Positives = 12/40 (30%), Gaps = 2/40 (5%)
Query: 61 HWGDTCETDITKSDCKGVCSPGATCSLNPSGGYICDDCSL 100
G +T +CK P G +C C L
Sbjct: 13 RRGPNLNIVLTCPECKVY--PPKIVERFSEGDVVCALCGL 50
>3fo5_A Thioesterase, adipose associated, isoform BFIT2; orthogonal bundle,
consortium, lipid transport; HET: 1PE TCE; 2.00A {Homo
sapiens}
Length = 258
Score = 27.3 bits (60), Expect = 3.2
Identities = 10/44 (22%), Positives = 17/44 (38%), Gaps = 1/44 (2%)
Query: 26 LSGLPDNEGLEKRVQTFVDG-GHRTLDLLHDMGARYHWGDTCET 68
L L D++ L ++ V + LL D+ R W +
Sbjct: 79 LYTLEDDKFLSFHMEMVVHVDAAQAFLLLSDLRQRPEWDKHYRS 122
>2zx2_A CSL3; lectin, rhamnose, innate immunity, immune system, sugar
binding protein; HET: RAM; 1.80A {Oncorhynchus keta}
PDB: 2zx1_A 2zx0_A* 2zx3_A* 2zx4_A*
Length = 195
Score = 27.0 bits (59), Expect = 3.3
Identities = 12/80 (15%), Positives = 22/80 (27%)
Query: 62 WGDTCETDITKSDCKGVCSPGATCSLNPSGGYICDDCSLAGSYEHYDRLCRLRARSFPKN 121
C + + S C + C + S D C Y C + +
Sbjct: 45 TDTNCLSQSSTSKMAERCGGKSECIVPASNFVFGDPCVGTYKYLDTKYSCVQQQETISSI 104
Query: 122 SFLTFPALKQRNRLHIKLQF 141
+ +R I++Q
Sbjct: 105 ICEGSDSQLLCDRGEIRIQR 124
>2gy5_A Angiopoietin-1 receptor; ligand-binding domain, transferase; HET:
NAG NDG; 2.90A {Homo sapiens} PDB: 2gy7_B*
Length = 423
Score = 27.4 bits (60), Expect = 3.7
Identities = 10/42 (23%), Positives = 10/42 (23%), Gaps = 8/42 (19%)
Query: 62 WGDTCETDITK----SDCKGVCSPGATCSLNPSGGYICDDCS 99
G TCE CK CS C C
Sbjct: 225 MGRTCEKACELHTFGRTCKERCSGQEGC----KSYVFCLPDP 262
>4d90_A EGF-like repeat and discoidin I-like domain-conta protein 3; RGD
finger, cell adhesion, innate immunity, extracellular MA
protein; HET: NGA NAG FUC; 2.60A {Homo sapiens}
Length = 143
Score = 26.2 bits (58), Expect = 4.4
Identities = 9/35 (25%), Positives = 15/35 (42%), Gaps = 4/35 (11%)
Query: 63 GDTCETDITKSDCKGV-CSPGATCSLNPSGGYICD 96
G C+ +I +C+ C G C + Y C+
Sbjct: 90 GIHCQHNIN--ECEVEPCKNGGIC-TDLVANYSCE 121
Score = 25.4 bits (56), Expect = 9.2
Identities = 4/27 (14%), Positives = 10/27 (37%)
Query: 63 GDTCETDITKSDCKGVCSPGATCSLNP 89
C + + + + + C+ NP
Sbjct: 33 DPNCSSVVEVASDEEEPTSAGPCTPNP 59
>3qsz_A STAR-related lipid transfer protein; structural genomics,
PSI-biology; 2.39A {Xanthomonas axonopodis PV}
Length = 189
Score = 26.5 bits (58), Expect = 4.5
Identities = 7/45 (15%), Positives = 14/45 (31%), Gaps = 1/45 (2%)
Query: 25 YLSGLPDNEGLEKRVQTFVDG-GHRTLDLLHDMGARYHWGDTCET 68
Y+ + + E R + + + +L D A W
Sbjct: 17 YVRNVEGSPLREFRGEVRLKAAADDVVKVLRDANAFRQWMPDVAA 61
>1ob1_C Major merozoite surface protein; immune system,
immunoglobulin/complex, immunoglobulin, antib fragment,
MSP1-19, EGF-like domain; 2.90A {Plasmodium falciparum}
SCOP: g.3.11.4 g.3.11.4 PDB: 1cej_A 2flg_A
Length = 99
Score = 25.5 bits (55), Expect = 7.0
Identities = 15/53 (28%), Positives = 20/53 (37%), Gaps = 9/53 (16%)
Query: 63 GDTCETDITKSDCK---GVCSPGATCSLNPSGG----YICDDCSLAGSYEHYD 108
GD C + C G C A C+ SG C +C+ SY +D
Sbjct: 38 GDKC-VENPNPTCNENNGGCDADAKCTEEDSGSNGKKITC-ECTKPDSYPLFD 88
>1lr7_A Follistatin, FS1; heparin-binding, cystine-rich, sucrose
octasulphate, hormone/growth factor complex; HET: SO4;
1.50A {Rattus norvegicus} SCOP: g.3.11.3 g.68.1.1 PDB:
1lr8_A* 1lr9_A
Length = 74
Score = 24.9 bits (54), Expect = 7.1
Identities = 14/55 (25%), Positives = 16/55 (29%), Gaps = 12/55 (21%)
Query: 75 CKGV-CSPGATCSLNPSGGYIC---DDCSLAGSYEH--------YDRLCRLRARS 117
C+ V C PG C +N C DCS Y C L
Sbjct: 4 CENVDCGPGKKCRMNKKNKPRCVCAPDCSNITWKGPVCGLDGKTYRNECALLKAR 58
>3k6s_B Integrin beta-2; cell receptor, adhesion molecule, cell adhesion,
pyrrolidone carboxylic acid; HET: NAG MAN; 3.50A {Homo
sapiens} PDB: 3k71_B* 3k72_B*
Length = 687
Score = 26.2 bits (57), Expect = 8.3
Identities = 10/45 (22%), Positives = 13/45 (28%), Gaps = 4/45 (8%)
Query: 55 DMGARYHWGDTCETDITKSDCKGVCSPGATCSLNPSGGYICDDCS 99
D+ + +G CE D G C G C C
Sbjct: 501 DVPGKLIYGQYCECD----TINCERYNGQVCGGPGRGLCFCGKCR 541
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.321 0.138 0.435
Gapped
Lambda K H
0.267 0.0681 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,954,946
Number of extensions: 166438
Number of successful extensions: 489
Number of sequences better than 10.0: 1
Number of HSP's gapped: 457
Number of HSP's successfully gapped: 83
Length of query: 193
Length of database: 6,701,793
Length adjustment: 88
Effective length of query: 105
Effective length of database: 4,244,745
Effective search space: 445698225
Effective search space used: 445698225
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (25.1 bits)