RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy2060
(193 letters)
>d1pz7a_ b.29.1.4 (A:) Agrin {Chicken (Gallus gallus) [TaxId: 9031]}
Length = 195
Score = 57.6 bits (138), Expect = 3e-11
Identities = 26/95 (27%), Positives = 41/95 (43%), Gaps = 6/95 (6%)
Query: 95 CDDCSLAG-SYEHYDRLCRLRARSFPKNSFLTFPALKQRNRLHIKLQFSTLHDSGLLLYN 153
+ + G +Y Y +S + P+ K H +L T GL+L++
Sbjct: 6 AEAIAFDGRTYMEYHNA---VTKSPDALDYPAEPSEKALQSNHFELSIKTEATQGLILWS 62
Query: 154 GRYNERHDFIALELTDSGRSVQFSWSLGSEVARLN 188
G+ ER D+IAL + D VQ + LGS+ L
Sbjct: 63 GKGLERSDYIALAIVDGF--VQMMYDLGSKPVVLR 95
>d1h30a1 b.29.1.4 (A:261-451) Growth-arrest-specific protein Gas6
{Human (Homo sapiens) [TaxId: 9606]}
Length = 191
Score = 55.2 bits (132), Expect = 2e-10
Identities = 24/114 (21%), Positives = 36/114 (31%), Gaps = 8/114 (7%)
Query: 79 CSPGATCSLNPSGGYICDD---CSLAGSYEHYDRLCRLRARSFPKNSFLTFPALKQRNRL 135
G S + C+D C + L R S L F Q RL
Sbjct: 4 GRGGLKLSQD---MDTCEDILPCVPFSVAKSVKSLYLGRMFSGTPVIRLRFK-RLQPTRL 59
Query: 136 HIKLQFSTLHDSGLLLYNGRYNERHDFIALELTDSGRSVQFSWSLGSEVARLNR 189
+ F T G+LL+ G ++ +I L L +Q ++ V
Sbjct: 60 VAEFDFRTFDPEGILLFAGG-HQDSTWIVLALRAGRLELQLRYNGVGRVTSSGP 112
>d1dyka1 b.29.1.4 (A:2744-2932) Laminin alpha2 chain {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 189
Score = 51.0 bits (121), Expect = 8e-09
Identities = 25/68 (36%), Positives = 35/68 (51%), Gaps = 5/68 (7%)
Query: 117 SFPKNSF--LTFPALKQRNRLHIKLQFSTLHDSGLLLYNGRYNERHDFIALELTDSGRSV 174
+NS + F K +NRL I+L+ T +SGLL Y R N DF ++L +
Sbjct: 20 GLSRNSHIAIAFDDTKVKNRLTIELEVRTEAESGLLFYMARINHA-DFATVQLRNG--FP 76
Query: 175 QFSWSLGS 182
FS+ LGS
Sbjct: 77 YFSYDLGS 84
>d1d2sa_ b.29.1.4 (A:) Sex hormone-binding globulin {Human (Homo
sapiens) [TaxId: 9606]}
Length = 170
Score = 48.6 bits (115), Expect = 4e-08
Identities = 11/67 (16%), Positives = 22/67 (32%), Gaps = 4/67 (5%)
Query: 122 SFLTFPALKQRNRLHIKLQFSTLHDSGLLLYNGRYNERHDFIALELTDSGRSVQFSWSLG 181
+ +TF L + + + T G++ Y N + D+ L L D +
Sbjct: 16 AVMTFD-LTKITKTSSSFEVRTWDPEGVIFYGDT-NPKDDWFMLGLRDG--RPEIQLHNH 71
Query: 182 SEVARLN 188
+
Sbjct: 72 WAQLTVG 78
>d1dyka2 b.29.1.4 (A:2933-3117) Laminin alpha2 chain {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 185
Score = 46.0 bits (108), Expect = 4e-07
Identities = 14/71 (19%), Positives = 27/71 (38%), Gaps = 5/71 (7%)
Query: 118 FPKNSFLTFPA-LKQRNRLHIKLQFSTLHDSGLLLYNGRYNERHDFIALELTDSGRSVQF 176
F F K L ++ +F T +G+LL +++ D + +E+ D + F
Sbjct: 8 FDGTGFAKAVGGFKVGLDLLVEFEFRTTRPTGVLLGVS--SQKMDGMGIEMIDE--KLMF 63
Query: 177 SWSLGSEVARL 187
G+
Sbjct: 64 HVDNGAGRFTA 74
>d2r1da1 b.29.1.4 (A:36-212) Ligand-binding domain of neurexin 1beta
{Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 177
Score = 39.0 bits (90), Expect = 9e-05
Identities = 9/83 (10%), Positives = 32/83 (38%), Gaps = 6/83 (7%)
Query: 115 ARSFPKNSFL--TFPALKQRN--RLHIKLQFSTLHDSGLLLYNGRYNERHDFIALELTDS 170
+ +P + + + + FST+ +L+ + D++ L +
Sbjct: 6 YIFSKGGGQITYKWPPNDRPSTRADRLAIGFSTVQKEAVLVRVDSSSGLGDYLELHIHQG 65
Query: 171 GRSVQFSWSLGSEVARLNRADSI 193
+ +++G++ + +++I
Sbjct: 66 --KIGVKFNVGTDDIAIEESNAI 86
>d1h30a2 b.29.1.4 (A:461-678) Growth-arrest-specific protein Gas6
{Human (Homo sapiens) [TaxId: 9606]}
Length = 218
Score = 35.7 bits (81), Expect = 0.002
Identities = 8/62 (12%), Positives = 20/62 (32%), Gaps = 10/62 (16%)
Query: 118 FPKNSFLTFP----------ALKQRNRLHIKLQFSTLHDSGLLLYNGRYNERHDFIALEL 167
+P + F + + + + D+G+L + R +++ L
Sbjct: 20 YPGSGFAFYSLDYMRTPLDVGTESTWEVEVVAHIRPAADTGVLFALWAPDLRAVPLSVAL 79
Query: 168 TD 169
D
Sbjct: 80 VD 81
>d1b9wa2 g.3.11.4 (A:46-89) Merozoite surface protein 1 (MSP-1)
{Malaria parasite (Plasmodium cynomolgi) [TaxId: 5827]}
Length = 44
Score = 28.3 bits (63), Expect = 0.069
Identities = 12/40 (30%), Positives = 20/40 (50%), Gaps = 1/40 (2%)
Query: 69 DITKSDCKGVCSPGATCSLNPSGGYICDDCSLAGSYEHYD 108
++T D G C+P A C +N +C C+ GS ++
Sbjct: 1 NMTCKDKNGGCAPEAECKMNDKNEIVC-KCTKEGSEPLFE 39
>d1cvua2 g.3.11.1 (A:33-73) Prostaglandin H2 synthase-1, EGF-like
module {Mouse (Mus musculus) [TaxId: 10090]}
Length = 41
Score = 26.3 bits (58), Expect = 0.38
Identities = 7/24 (29%), Positives = 8/24 (33%), Gaps = 1/24 (4%)
Query: 79 CSPGATCSLNPSGGYICDDCSLAG 102
C C Y C DC+ G
Sbjct: 9 CQNRGECMSTGFDQYKC-DCTRTG 31
>d1i8ya_ g.3.16.1 (A:) N-terminal domain of granulin-1 {Carp
(Cyprinus carpio) [TaxId: 7962]}
Length = 28
Score = 25.7 bits (56), Expect = 0.52
Identities = 10/22 (45%), Positives = 13/22 (59%)
Query: 74 DCKGVCSPGATCSLNPSGGYIC 95
D +C G TCSL+P G + C
Sbjct: 3 DAATICPDGTTCSLSPYGVWYC 24
>d1q4ga2 g.3.11.1 (A:32-73) Prostaglandin H2 synthase-1, EGF-like
module {Sheep (Ovis aries) [TaxId: 9940]}
Length = 42
Score = 25.2 bits (55), Expect = 0.90
Identities = 7/24 (29%), Positives = 8/24 (33%), Gaps = 1/24 (4%)
Query: 79 CSPGATCSLNPSGGYICDDCSLAG 102
C C Y C DC+ G
Sbjct: 10 CQHQGICVRFGLDRYQC-DCTRTG 32
>d1ob1c2 g.3.11.4 (C:46-96) Merozoite surface protein 1 (MSP-1)
{Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}
Length = 51
Score = 25.3 bits (55), Expect = 1.2
Identities = 12/44 (27%), Positives = 19/44 (43%), Gaps = 5/44 (11%)
Query: 69 DITKSDCKGVCSPGATCSLNPSGGY----ICDDCSLAGSYEHYD 108
+ T ++ G C A C+ SG C +C+ SY +D
Sbjct: 1 NPTCNENNGGCDADAKCTEEDSGSNGKKITC-ECTKPDSYPLFD 43
>d1xmpa_ c.23.8.1 (A:) N5-CAIR mutase (phosphoribosylaminoimidazole
carboxylase, PurE) {Bacillus anthracis [TaxId: 1392]}
Length = 155
Score = 26.4 bits (58), Expect = 1.5
Identities = 10/66 (15%), Positives = 16/66 (24%), Gaps = 2/66 (3%)
Query: 38 RVQTFVDGGHRTLDLLHDMGARYHWGDTCETDITKSDCKGVCSPGATCSLNPSG-GYICD 96
+ V HRT D + + + I + N G
Sbjct: 30 PYEKKVVSAHRTPDYMFEYAETAR-ERGLKVIIAGAGGAAHLPGMVAAKTNLPVIGVPVQ 88
Query: 97 DCSLAG 102
+L G
Sbjct: 89 SKALNG 94
>d1yaaa_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Baker's
yeast (Saccharomyces cerevisiae), cytosolic form [TaxId:
4932]}
Length = 412
Score = 26.5 bits (57), Expect = 2.6
Identities = 8/127 (6%), Positives = 24/127 (18%), Gaps = 2/127 (1%)
Query: 54 HDMGARYHWGDTCETDITKSDCKGVCSPGATCSLNPSGGYICDDCSLAGSYEHYDRLCRL 113
D A + G + +
Sbjct: 226 LDKDAYAVRLGVEKLSTVSPVFVCQSFAKNAGMYGERVGCFHLALTKQAQNKTIKPAVTS 285
Query: 114 RARSFPKNSFLTFPALKQRNRLHIKL--QFSTLHDSGLLLYNGRYNERHDFIALELTDSG 171
+ ++ PA + + + + ++ + R + + L G
Sbjct: 286 QLAKIIRSEVSNPPAYGAKIVAKLLETPELTEQWHKDMVTMSSRITKMRHALRDHLVKLG 345
Query: 172 RSVQFSW 178
+
Sbjct: 346 TPGNWDH 352
>d1u5ka2 g.45.1.2 (A:81-237) Recombinational repair protein RecO,
C-terminal domain {Deinococcus radiodurans [TaxId:
1299]}
Length = 157
Score = 25.4 bits (55), Expect = 3.8
Identities = 15/79 (18%), Positives = 23/79 (29%), Gaps = 2/79 (2%)
Query: 73 SDCKGVCSPGATCSLNPSGGYICDDCSLAGSYEHY-DRLCRLRARSFPKNSFLTFPALKQ 131
+ C +P G +C C+ Y R R + SF
Sbjct: 71 ARCARCGAPDPEHPDPLGGQLLCSKCAALPPYPPAVLDFLRHAVRRTVRASFEQPVPSAD 130
Query: 132 RNRL-HIKLQFSTLHDSGL 149
R L +F T+ G+
Sbjct: 131 RPALWRALEKFVTVQVGGV 149
>d1g26a_ g.3.16.1 (A:) N-terminal domain of granulin-1 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 31
Score = 22.6 bits (48), Expect = 6.1
Identities = 9/26 (34%), Positives = 13/26 (50%)
Query: 70 ITKSDCKGVCSPGATCSLNPSGGYIC 95
+ D + +C G TC PSG + C
Sbjct: 1 VVHCDMEVICPDGYTCCRLPSGAWGC 26
>d1o4va_ c.23.8.1 (A:) N5-CAIR mutase
(phosphoribosylaminoimidazole carboxylase, PurE)
{Thermotoga maritima [TaxId: 2336]}
Length = 169
Score = 24.4 bits (53), Expect = 7.1
Identities = 4/24 (16%), Positives = 8/24 (33%)
Query: 38 RVQTFVDGGHRTLDLLHDMGARYH 61
+ + HRT D + +
Sbjct: 29 DYEITIVSAHRTPDRMFEYAKNAE 52
>d1lwub1 d.171.1.1 (B:219-477) Fibrinogen C-terminal domains {Sea
lamprey (Petromyzon marinus), beta [TaxId: 7757]}
Length = 259
Score = 24.5 bits (52), Expect = 8.3
Identities = 13/63 (20%), Positives = 18/63 (28%), Gaps = 3/63 (4%)
Query: 45 GGHRTLDLLHDMGARYHWGDTCETDITKSDCKGVCSPGATCSLNPSGG---YICDDCSLA 101
T + + H G T +D P CS +GG C +
Sbjct: 156 LEGATQLMGDNRTMTIHNGMQFSTFDRDNDNWNPGDPTKHCSREDAGGWWYNRCHAANPN 215
Query: 102 GSY 104
G Y
Sbjct: 216 GRY 218
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.321 0.138 0.435
Gapped
Lambda K H
0.267 0.0589 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 726,807
Number of extensions: 32965
Number of successful extensions: 111
Number of sequences better than 10.0: 1
Number of HSP's gapped: 109
Number of HSP's successfully gapped: 24
Length of query: 193
Length of database: 2,407,596
Length adjustment: 81
Effective length of query: 112
Effective length of database: 1,295,466
Effective search space: 145092192
Effective search space used: 145092192
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 50 (23.3 bits)