BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy2064
(221 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9V5N8|STAN_DROME Protocadherin-like wing polarity protein stan OS=Drosophila
melanogaster GN=stan PE=1 SV=4
Length = 3579
Score = 226 bits (576), Expect = 8e-59, Method: Compositional matrix adjust.
Identities = 123/223 (55%), Positives = 145/223 (65%), Gaps = 59/223 (26%)
Query: 1 MLFNSITVRLDDMTKEAFLSPLLNFFMDGLAAIIPCPRENIYLFSIQDDTDVTSRILNVS 60
MLFNS+TVRL++MT+EAFLSPLLNFF+DGLAAIIPCP+E+I++FSIQDDTDV+SRILNVS
Sbjct: 1317 MLFNSVTVRLNEMTEEAFLSPLLNFFLDGLAAIIPCPKEHIFVFSIQDDTDVSSRILNVS 1376
Query: 61 FSARASDGT---FYPPQFLQERVYLNRGILARLATVQERVYLNRGILARLATVQSATLSI 117
FSAR D + FY PQ+LQERVYL NR ILARLATV
Sbjct: 1377 FSARRPDVSHEEFYTPQYLQERVYL-----------------NRAILARLATV------- 1412
Query: 118 DECDTELVVRHGSTLGTFCANTSSYVLDSKEVEVLPFDDNLCVQEPCLNYEQCVTVLKFG 177
EVLPFDDNLCV+EPCLN+E+C+TVLKFG
Sbjct: 1413 --------------------------------EVLPFDDNLCVREPCLNFEECLTVLKFG 1440
Query: 178 NASGFVASDSVLFRPIYPVSTFACVHPDKFYDGLDSILTTSNV 220
NAS F+ SD+VLFRPIYPV+TFAC P+ F + L + V
Sbjct: 1441 NASEFIHSDTVLFRPIYPVNTFACSCPEGFTGSKEHYLCDTEV 1483
>sp|Q91ZI0|CELR3_MOUSE Cadherin EGF LAG seven-pass G-type receptor 3 OS=Mus musculus
GN=Celsr3 PE=2 SV=2
Length = 3301
Score = 132 bits (333), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 78/210 (37%), Positives = 114/210 (54%), Gaps = 55/210 (26%)
Query: 1 MLFNSITVRLDDMTKEAFLSPLLNFFMDGLAAIIPCPRENIYLFSIQDDTDVTSRILNVS 60
+L NS+TVRL++M +E FLSPLL F++G+AA++ P E++++F+IQ+DTDV +LNVS
Sbjct: 1261 LLANSLTVRLENMWQERFLSPLLGHFLEGVAAVLATPTEDVFIFNIQNDTDVGGTVLNVS 1320
Query: 61 FSA---RASDGTFYPPQFLQERVYLNRGILARLATVQERVYLNRGILARLATVQSATLSI 117
FSA R + P F E +QE++Y+ R LA
Sbjct: 1321 FSALAPRGAGAGAAGPWFSSEE-------------LQEQLYVRRAALA------------ 1355
Query: 118 DECDTELVVRHGSTLGTFCANTSSYVLDSKEVEVLPFDDNLCVQEPCLNYEQCVTVLKFG 177
+ +LD VLPFDDN+C++EPC NY +CV+VL+F
Sbjct: 1356 ----------------------ARSLLD-----VLPFDDNVCLREPCENYMKCVSVLRFD 1388
Query: 178 NASGFVASDSVLFRPIYPVSTFACVHPDKF 207
+++ F+AS S LFRPI P++ C P F
Sbjct: 1389 SSAPFLASTSTLFRPIQPIAGLRCRCPPGF 1418
>sp|O88278|CELR3_RAT Cadherin EGF LAG seven-pass G-type receptor 3 OS=Rattus norvegicus
GN=Celsr3 PE=2 SV=1
Length = 3313
Score = 132 bits (332), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 78/210 (37%), Positives = 114/210 (54%), Gaps = 55/210 (26%)
Query: 1 MLFNSITVRLDDMTKEAFLSPLLNFFMDGLAAIIPCPRENIYLFSIQDDTDVTSRILNVS 60
+L NS+TVRL++M +E FLSPLL F++G+AA++ P E++++F+IQ+DTDV +LNVS
Sbjct: 1261 LLANSLTVRLENMWQERFLSPLLGHFLEGVAAVLATPTEDVFIFNIQNDTDVGGTVLNVS 1320
Query: 61 FSA---RASDGTFYPPQFLQERVYLNRGILARLATVQERVYLNRGILARLATVQSATLSI 117
FSA R + P F E +QE++Y+ R LA
Sbjct: 1321 FSALAPRGAGAGAAGPWFSSEE-------------LQEQLYVRRAALA------------ 1355
Query: 118 DECDTELVVRHGSTLGTFCANTSSYVLDSKEVEVLPFDDNLCVQEPCLNYEQCVTVLKFG 177
+ +LD VLPFDDN+C++EPC NY +CV+VL+F
Sbjct: 1356 ----------------------ARSLLD-----VLPFDDNVCLREPCENYMKCVSVLRFD 1388
Query: 178 NASGFVASDSVLFRPIYPVSTFACVHPDKF 207
+++ F+AS S LFRPI P++ C P F
Sbjct: 1389 SSAPFLASASTLFRPIQPIAGLRCRCPPGF 1418
>sp|Q9NYQ7|CELR3_HUMAN Cadherin EGF LAG seven-pass G-type receptor 3 OS=Homo sapiens
GN=CELSR3 PE=1 SV=2
Length = 3312
Score = 132 bits (331), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 78/210 (37%), Positives = 114/210 (54%), Gaps = 55/210 (26%)
Query: 1 MLFNSITVRLDDMTKEAFLSPLLNFFMDGLAAIIPCPRENIYLFSIQDDTDVTSRILNVS 60
+L NS+TVRL++M +E FLSPLL F++G+AA++ P E++++F+IQ+DTDV +LNVS
Sbjct: 1270 LLANSLTVRLENMWQERFLSPLLGRFLEGVAAVLATPAEDVFIFNIQNDTDVGGTVLNVS 1329
Query: 61 FSA---RASDGTFYPPQFLQERVYLNRGILARLATVQERVYLNRGILARLATVQSATLSI 117
FSA R + P F E +QE++Y+ R LA
Sbjct: 1330 FSALAPRGAGAGAAGPWFSSEE-------------LQEQLYVRRAALA------------ 1364
Query: 118 DECDTELVVRHGSTLGTFCANTSSYVLDSKEVEVLPFDDNLCVQEPCLNYEQCVTVLKFG 177
+ +LD VLPFDDN+C++EPC NY +CV+VL+F
Sbjct: 1365 ----------------------ARSLLD-----VLPFDDNVCLREPCENYMKCVSVLRFD 1397
Query: 178 NASGFVASDSVLFRPIYPVSTFACVHPDKF 207
+++ F+AS S LFRPI P++ C P F
Sbjct: 1398 SSAPFLASASTLFRPIQPIAGLRCRCPPGF 1427
>sp|O35161|CELR1_MOUSE Cadherin EGF LAG seven-pass G-type receptor 1 OS=Mus musculus
GN=Celsr1 PE=2 SV=3
Length = 3034
Score = 103 bits (258), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 70/210 (33%), Positives = 110/210 (52%), Gaps = 59/210 (28%)
Query: 1 MLFNSITVRLDDMTKEAFLSPLLNFFMDGLAAIIPCPRENIYLFSIQDDTDVTSRILNVS 60
ML NSITVRL++M++E FLSPLL+ F++G+A ++ +++I++F+IQ+DTDV+S ILNV+
Sbjct: 1217 MLTNSITVRLENMSQEKFLSPLLSLFVEGVATVLSTTKDDIFVFNIQNDTDVSSNILNVT 1276
Query: 61 FSARASDGT---FYPPQFLQERVYLNRGILARLATVQERVYLNRGILARLATVQSATLSI 117
FSA GT F+P + LQE++YLNR +L + + Q + + I R
Sbjct: 1277 FSALLPGGTRGRFFPSEDLQEQIYLNRTLLTTI-SAQRVLPFDDNICLR----------- 1324
Query: 118 DECDTELVVRHGSTLGTFCANTSSYVLDSKEVEVLPFDDNLCVQEPCLNYEQCVTVLKFG 177
+ C+ + K V VL FD
Sbjct: 1325 EPCENYM----------------------KCVSVLRFD---------------------- 1340
Query: 178 NASGFVASDSVLFRPIYPVSTFACVHPDKF 207
+++ F++S +VLFRPI+P++ C P F
Sbjct: 1341 SSAPFISSTTVLFRPIHPITGLRCRCPPGF 1370
>sp|Q9NYQ6|CELR1_HUMAN Cadherin EGF LAG seven-pass G-type receptor 1 OS=Homo sapiens
GN=CELSR1 PE=1 SV=1
Length = 3014
Score = 102 bits (255), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 69/210 (32%), Positives = 110/210 (52%), Gaps = 59/210 (28%)
Query: 1 MLFNSITVRLDDMTKEAFLSPLLNFFMDGLAAIIPCPRENIYLFSIQDDTDVTSRILNVS 60
ML NSITVRL++M++E FLSPLL F++G+AA++ ++++++F++Q+DTDV+S ILNV+
Sbjct: 1202 MLTNSITVRLENMSQEKFLSPLLALFVEGVAAVLSTTKDDVFVFNVQNDTDVSSNILNVT 1261
Query: 61 FSA---RASDGTFYPPQFLQERVYLNRGILARLATVQERVYLNRGILARLATVQSATLSI 117
FSA G F+P + LQE++YLNR +L ++T Q + + I R
Sbjct: 1262 FSALLPGGVRGQFFPSEDLQEQIYLNRTLLTTIST-QRVLPFDDNICLR----------- 1309
Query: 118 DECDTELVVRHGSTLGTFCANTSSYVLDSKEVEVLPFDDNLCVQEPCLNYEQCVTVLKFG 177
+ C+ + K V VL FD
Sbjct: 1310 EPCENYM----------------------KCVSVLRFD---------------------- 1325
Query: 178 NASGFVASDSVLFRPIYPVSTFACVHPDKF 207
+++ F++S +VLFRPI+P++ C P F
Sbjct: 1326 SSAPFLSSTTVLFRPIHPINGLRCRCPPGF 1355
>sp|Q9QYP2|CELR2_RAT Cadherin EGF LAG seven-pass G-type receptor 2 (Fragment) OS=Rattus
norvegicus GN=Celsr2 PE=2 SV=1
Length = 2144
Score = 83.2 bits (204), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 66/213 (30%), Positives = 95/213 (44%), Gaps = 62/213 (29%)
Query: 1 MLFNSITVRLDDMTKEAFLSPLLNFFMDGLAAIIPCPRENIYLFSIQDDTDV-TSRILNV 59
ML +SIT+RL+DM+ E FLSPLL F+ +AA + P +++ +F++Q DTD ILNV
Sbjct: 349 MLTHSITLRLEDMSPERFLSPLLGLFIQAVAATLATPPDHVVVFNVQRDTDAPGGHILNV 408
Query: 60 SFS-----ARASDGTFYPPQFLQERVYLNRGILARLATVQERVYLNRGILARLATVQSAT 114
S S F P + LQER+YLNR +L + + Q + + I R
Sbjct: 409 SLSVGQPPGPGGGPPFLPSEDLQERLYLNRSLLTAI-SAQRVLPFDDNICLR-------- 459
Query: 115 LSIDECDTELVVRHGSTLGTFCANTSSYVLDSKEVEVLPFDDNLCVQEPCLNYEQCVTVL 174
+ C+ + + V VL FD
Sbjct: 460 ---EPCENYM----------------------RCVSVLRFD------------------- 475
Query: 175 KFGNASGFVASDSVLFRPIYPVSTFACVHPDKF 207
+++ F+AS SVLFRPI+PV C P F
Sbjct: 476 ---SSAPFIASSSVLFRPIHPVGGLRCRCPPGF 505
>sp|Q9HCU4|CELR2_HUMAN Cadherin EGF LAG seven-pass G-type receptor 2 OS=Homo sapiens
GN=CELSR2 PE=1 SV=1
Length = 2923
Score = 82.8 bits (203), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 66/213 (30%), Positives = 95/213 (44%), Gaps = 62/213 (29%)
Query: 1 MLFNSITVRLDDMTKEAFLSPLLNFFMDGLAAIIPCPRENIYLFSIQDDTDV-TSRILNV 59
ML +SIT+RL+DM+ E FLSPLL F+ +AA + P +++ +F++Q DTD ILNV
Sbjct: 1124 MLTHSITLRLEDMSPERFLSPLLGLFIQAVAATLATPPDHVVVFNVQRDTDAPGGHILNV 1183
Query: 60 SFS-----ARASDGTFYPPQFLQERVYLNRGILARLATVQERVYLNRGILARLATVQSAT 114
S S F P + LQER+YLNR +L + + Q + + I R
Sbjct: 1184 SLSVGQPPGPGGGPPFLPSEDLQERLYLNRSLLTAI-SAQRVLPFDDNICLR-------- 1234
Query: 115 LSIDECDTELVVRHGSTLGTFCANTSSYVLDSKEVEVLPFDDNLCVQEPCLNYEQCVTVL 174
+ C+ + + V VL FD
Sbjct: 1235 ---EPCENYM----------------------RCVSVLRFD------------------- 1250
Query: 175 KFGNASGFVASDSVLFRPIYPVSTFACVHPDKF 207
+++ F+AS SVLFRPI+PV C P F
Sbjct: 1251 ---SSAPFIASSSVLFRPIHPVGGLRCRCPPGF 1280
>sp|Q9R0M0|CELR2_MOUSE Cadherin EGF LAG seven-pass G-type receptor 2 OS=Mus musculus
GN=Celsr2 PE=1 SV=2
Length = 2920
Score = 77.4 bits (189), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 64/210 (30%), Positives = 94/210 (44%), Gaps = 62/210 (29%)
Query: 1 MLFNSITVRLDDMTKEAFLSPLLNFFMDGLAAIIPCPRENIYLFSIQDDTDV-TSRILNV 59
ML +SIT+RL+DM+ E FLSPLL F+ +AA + P +++ +F++Q DTD ILNV
Sbjct: 1125 MLTHSITLRLEDMSPERFLSPLLGLFIQAVAATLATPPDHVVVFNVQRDTDAPGGHILNV 1184
Query: 60 SFS-----ARASDGTFYPPQFLQERVYLNRGILARLATVQERVYLNRGILARLATVQSAT 114
S S F P + LQER+YLNR +L + + + + +R L R
Sbjct: 1185 SLSVGQPPGPGGGPPFLPSEDLQERLYLNRSLLTAI-SAKRVLPFDRQHLLR-------- 1235
Query: 115 LSIDECDTELVVRHGSTLGTFCANTSSYVLDSKEVEVLPFDDNLCVQEPCLNYEQCVTVL 174
+ C+ + + V VL FD
Sbjct: 1236 ---EPCENYM----------------------RCVSVLRFD------------------- 1251
Query: 175 KFGNASGFVASDSVLFRPIYPVSTFACVHP 204
+++ F+AS SVLFRPI+ V C P
Sbjct: 1252 ---SSAPFIASSSVLFRPIHLVGGLRCRCP 1278
>sp|Q8BNA6|FAT3_MOUSE Protocadherin Fat 3 OS=Mus musculus GN=Fat3 PE=1 SV=2
Length = 4555
Score = 35.8 bits (81), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 40/172 (23%), Positives = 76/172 (44%), Gaps = 5/172 (2%)
Query: 1 MLFNSITVRLDDMTKEAFLSPLLNFFMDGLA-AIIPCPRENIYLFSIQDDTDVTSRILNV 59
ML N++T+R +D++ E F+ ++ F L A++ ++++ + SIQ V + L++
Sbjct: 3643 MLQNTVTIRFEDVSPEDFVGLHMHGFRRILRNAVLTQKQDSLRIISIQ--PVVGTNQLDM 3700
Query: 60 SFSARASDGTFYPPQFLQERVYLNRGILARLATVQERVYLNRGILARLATVQSATLSIDE 119
F+ FY P +L +++ R L + + + N L LS+D
Sbjct: 3701 LFAVEMHSSEFYKPAYLIQKLSNARRHLENVMHIAAILEKNCSGLDCQEQHCEQGLSLDS 3760
Query: 120 CDTELVVRHGSTLGTFCANTSSYVLDSKEVEVLPFDDNLCVQEPCLNYEQCV 171
L+ + + C V + V P ++ CV++PC QCV
Sbjct: 3761 --HALMTYSTARISFVCPRFYRNVRCTCNGGVCPGSNDPCVEKPCPEDMQCV 3810
>sp|Q8R508|FAT3_RAT Protocadherin Fat 3 OS=Rattus norvegicus GN=Fat3 PE=1 SV=1
Length = 4555
Score = 33.9 bits (76), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 39/172 (22%), Positives = 76/172 (44%), Gaps = 5/172 (2%)
Query: 1 MLFNSITVRLDDMTKEAFLSPLLNFFMDGLA-AIIPCPRENIYLFSIQDDTDVTSRILNV 59
ML N++T+R ++++ E F+ ++ F L A++ ++++ + SIQ V + L++
Sbjct: 3643 MLQNTVTIRFENVSPEDFVGLHMHGFRRILRNAVLTQKQDSLRIISIQ--PVVGTNQLDM 3700
Query: 60 SFSARASDGTFYPPQFLQERVYLNRGILARLATVQERVYLNRGILARLATVQSATLSIDE 119
F+ FY P +L +++ R L + + + N L LS+D
Sbjct: 3701 LFAVEMHSSEFYKPAYLIQKLSNARRHLENVMHIAAILEKNCSGLDCQEQHCEQGLSLDS 3760
Query: 120 CDTELVVRHGSTLGTFCANTSSYVLDSKEVEVLPFDDNLCVQEPCLNYEQCV 171
L+ + + C V + V P ++ CV++PC QCV
Sbjct: 3761 --HALMTYSTARISFVCPRFYRNVRCTCNGGVCPGSNDPCVEKPCPEDMQCV 3810
>sp|Q8TDW7|FAT3_HUMAN Protocadherin Fat 3 OS=Homo sapiens GN=FAT3 PE=2 SV=2
Length = 4589
Score = 33.1 bits (74), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 37/173 (21%), Positives = 75/173 (43%), Gaps = 5/173 (2%)
Query: 1 MLFNSITVRLDDMTKEAFLSPLLNFFMDGLA-AIIPCPRENIYLFSIQDDTDVTSRILNV 59
ML N++T+R ++++ E F+ ++ F L A++ ++++ + SIQ L++
Sbjct: 3644 MLQNTVTIRFENVSPEDFVGLHMHGFRRTLRNAVLTQKQDSLRIISIQPVAGTNQ--LDM 3701
Query: 60 SFSARASDGTFYPPQFLQERVYLNRGILARLATVQERVYLNRGILARLATVQSATLSIDE 119
F+ FY P +L +++ R L + + + N L LS+D
Sbjct: 3702 LFAVEMHSSEFYKPAYLIQKLSNARRHLENIMRISAILEKNCSGLDCQEQHCEQGLSLDS 3761
Query: 120 CDTELVVRHGSTLGTFCANTSSYVLDSKEVEVLPFDDNLCVQEPCLNYEQCVT 172
L+ + + C V + + P ++ CV++PC QCV+
Sbjct: 3762 --HALMTYSTARISFVCPRFYRNVRCTCNGGLCPGSNDPCVEKPCPGDMQCVS 3812
>sp|O15943|CADN_DROME Neural-cadherin OS=Drosophila melanogaster GN=CadN PE=1 SV=2
Length = 3097
Score = 32.7 bits (73), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 32/118 (27%), Positives = 53/118 (44%), Gaps = 21/118 (17%)
Query: 2 LFNSITVRLDDMTKEAFLS-----------PLLNFFMDGLAAIIPCPRENIYLFSIQDDT 50
+ NS +VRL ++ E F+ ++ F D LA ++ REN+ +FS+Q
Sbjct: 2182 VVNSGSVRLSGISDEDFIRVWNYRTQSMSRSKMDRFRDKLADLLNTERENVDIFSVQLKR 2241
Query: 51 DVTSRILNVSFSARASDGTFYPPQFLQERVYLNR-------GILARLATVQERVYLNR 101
+ +V FSA S +Y P L V ++R GI + + E +Y N+
Sbjct: 2242 KHPP-LTDVRFSAHGS--PYYKPVRLNGIVLMHREEIEKDVGINITMVGIDECLYENQ 2296
>sp|Q9ZUN4|ACCO1_ARATH 1-aminocyclopropane-1-carboxylate oxidase 1 OS=Arabidopsis thaliana
GN=ACO1 PE=2 SV=1
Length = 310
Score = 32.3 bits (72), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 26/62 (41%), Gaps = 9/62 (14%)
Query: 21 PLLNFFMDGLAAIIPCPRENIYLFSIQDDTDVTS---------RILNVSFSARASDGTFY 71
P L FF DG IP + N + D ++ S R++ V +R S TFY
Sbjct: 198 PGLEFFKDGKWVPIPPSKNNTIFVNTGDQLEILSNGRYKSVVHRVMTVKHGSRLSIATFY 257
Query: 72 PP 73
P
Sbjct: 258 NP 259
>sp|Q48335|G3P_HALVA Glyceraldehyde-3-phosphate dehydrogenase OS=Haloarcula vallismortis
GN=gap PE=3 SV=1
Length = 335
Score = 32.3 bits (72), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 24/46 (52%)
Query: 21 PLLNFFMDGLAAIIPCPRENIYLFSIQDDTDVTSRILNVSFSARAS 66
P L +DG+A +P P +I F + D DVT +N +F A+
Sbjct: 225 PELEGKLDGMAIRVPVPNGSITEFVVDLDDDVTESDVNAAFEDAAA 270
>sp|B7HAF0|Y3175_BACC4 UPF0753 protein BCB4264_A3175 OS=Bacillus cereus (strain B4264)
GN=BCB4264_A3175 PE=3 SV=1
Length = 868
Score = 32.0 bits (71), Expect = 3.3, Method: Composition-based stats.
Identities = 13/27 (48%), Positives = 18/27 (66%)
Query: 178 NASGFVASDSVLFRPIYPVSTFACVHP 204
N + VAS S + P++P+STFA HP
Sbjct: 19 NINDLVASASRVIAPLWPISTFAAHHP 45
>sp|B7IMQ6|Y2073_BACC2 UPF0753 protein BCG9842_B2073 OS=Bacillus cereus (strain G9842)
GN=BCG9842_B2073 PE=3 SV=1
Length = 868
Score = 32.0 bits (71), Expect = 3.3, Method: Composition-based stats.
Identities = 13/27 (48%), Positives = 18/27 (66%)
Query: 178 NASGFVASDSVLFRPIYPVSTFACVHP 204
N + VAS S + P++P+STFA HP
Sbjct: 19 NINDLVASASRVIAPLWPISTFAAHHP 45
>sp|A4H7G5|JBP2_LEIBR Bifunctional helicase and thymine dioxygenase JBP2 OS=Leishmania
braziliensis GN=JBP2 PE=3 SV=1
Length = 1098
Score = 31.2 bits (69), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 15/46 (32%), Positives = 29/46 (63%), Gaps = 2/46 (4%)
Query: 81 YLNRGILARLATVQERVYLNRGILARL--ATVQSATLSIDECDTEL 124
YL G+++ + ++ R +LNR IL +L ++ T++I+E D+ L
Sbjct: 485 YLRTGLMSSVCEMERRKHLNRLILQQLLNTEIRHTTVNINEADSSL 530
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.324 0.138 0.405
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 75,886,609
Number of Sequences: 539616
Number of extensions: 2868095
Number of successful extensions: 7479
Number of sequences better than 100.0: 18
Number of HSP's better than 100.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 7427
Number of HSP's gapped (non-prelim): 46
length of query: 221
length of database: 191,569,459
effective HSP length: 113
effective length of query: 108
effective length of database: 130,592,851
effective search space: 14104027908
effective search space used: 14104027908
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 59 (27.3 bits)