Query psy2064
Match_columns 221
No_of_seqs 130 out of 255
Neff 5.7
Searched_HMMs 46136
Date Fri Aug 16 23:21:33 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy2064.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/2064hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4289|consensus 100.0 2.1E-31 4.7E-36 268.9 11.4 157 1-218 1084-1244(2531)
2 KOG1219|consensus 99.9 8.7E-23 1.9E-27 212.6 14.1 176 1-209 3493-3679(4289)
3 PF00008 EGF: EGF-like domain 98.7 5.8E-09 1.3E-13 64.6 1.8 32 159-211 1-32 (32)
4 KOG1219|consensus 98.5 1E-07 2.2E-12 102.4 5.6 62 132-220 3884-3949(4289)
5 smart00179 EGF_CA Calcium-bind 98.0 6.4E-06 1.4E-10 51.2 3.8 36 156-213 2-39 (39)
6 cd00054 EGF_CA Calcium-binding 97.9 1.2E-05 2.7E-10 49.1 3.8 35 157-213 3-38 (38)
7 cd00053 EGF Epidermal growth f 97.8 3.9E-05 8.5E-10 46.1 3.7 32 159-212 2-35 (36)
8 smart00181 EGF Epidermal growt 97.6 9.8E-05 2.1E-09 45.2 3.5 32 158-212 1-34 (35)
9 PF12661 hEGF: Human growth fa 97.3 8.5E-05 1.8E-09 37.4 0.4 13 200-212 1-13 (13)
10 KOG4289|consensus 97.1 0.00026 5.7E-09 74.9 2.5 41 154-216 1237-1277(2531)
11 PF07974 EGF_2: EGF-like domai 97.0 0.0008 1.7E-08 41.7 3.3 27 162-212 6-32 (32)
12 PF07645 EGF_CA: Calcium-bindi 96.9 0.00067 1.5E-08 44.0 2.2 30 157-208 3-34 (42)
13 PHA02887 EGF-like protein; Pro 96.0 0.006 1.3E-07 48.6 3.0 39 156-215 83-124 (126)
14 PHA03099 epidermal growth fact 95.8 0.0066 1.4E-07 49.2 2.3 38 156-214 42-82 (139)
15 KOG3516|consensus 94.3 0.038 8.1E-07 58.2 3.5 42 151-214 950-992 (1306)
16 PF12947 EGF_3: EGF domain; I 93.3 0.032 6.9E-07 35.4 0.6 27 162-210 6-32 (36)
17 KOG3514|consensus 93.3 0.048 1E-06 57.1 2.1 35 158-214 625-660 (1591)
18 PF12662 cEGF: Complement Clr- 92.9 0.057 1.2E-06 31.5 1.2 11 198-208 1-11 (24)
19 KOG3516|consensus 92.9 0.066 1.4E-06 56.4 2.5 36 156-213 545-581 (1306)
20 KOG1217|consensus 90.7 0.23 5.1E-06 45.2 3.4 36 155-212 270-306 (487)
21 PF11548 Receptor_IA-2: Protei 89.6 2 4.3E-05 32.9 7.0 78 15-118 10-88 (91)
22 cd01475 vWA_Matrilin VWA_Matri 89.3 0.37 8.1E-06 41.2 3.2 32 14-47 16-47 (224)
23 PF09064 Tme5_EGF_like: Thromb 88.6 0.32 6.9E-06 30.7 1.7 12 197-208 16-27 (34)
24 PF00954 S_locus_glycop: S-loc 87.9 0.54 1.2E-05 36.0 3.0 31 155-208 76-107 (110)
25 PF14670 FXa_inhibition: Coagu 83.0 0.65 1.4E-05 29.4 1.1 12 197-208 17-28 (36)
26 PF01683 EB: EB module; Inter 80.4 3.6 7.8E-05 27.3 4.1 27 156-208 19-46 (52)
27 PF00053 Laminin_EGF: Laminin 80.0 1 2.2E-05 29.7 1.2 16 198-213 17-32 (49)
28 KOG1217|consensus 79.7 1.6 3.5E-05 39.7 2.9 36 157-214 170-207 (487)
29 smart00051 DSL delta serrate l 77.7 1.9 4.1E-05 30.5 2.2 13 200-212 51-63 (63)
30 KOG1225|consensus 75.9 2.7 6E-05 41.4 3.4 11 157-167 245-255 (525)
31 KOG1836|consensus 75.5 2 4.3E-05 47.7 2.6 36 158-213 776-812 (1705)
32 KOG1225|consensus 74.9 3.3 7.1E-05 40.9 3.7 16 200-215 297-312 (525)
33 cd00055 EGF_Lam Laminin-type e 68.0 4.9 0.00011 26.6 2.3 16 198-213 18-33 (50)
34 PF12946 EGF_MSP1_1: MSP1 EGF 65.6 4.3 9.3E-05 26.1 1.5 31 158-209 1-31 (37)
35 PF08921 DUF1904: Domain of un 64.6 48 0.001 25.9 7.6 71 8-87 4-80 (108)
36 KOG1214|consensus 64.5 5.7 0.00012 41.5 2.9 37 155-213 826-862 (1289)
37 PRK02220 4-oxalocrotonate taut 64.1 22 0.00048 23.8 5.0 33 15-47 13-45 (61)
38 PRK01964 4-oxalocrotonate taut 60.8 26 0.00057 23.9 5.0 41 7-47 5-45 (64)
39 smart00180 EGF_Lam Laminin-typ 58.2 7.4 0.00016 25.5 1.7 17 199-216 18-34 (46)
40 KOG4260|consensus 56.9 8.4 0.00018 35.4 2.4 35 160-213 148-182 (350)
41 KOG3509|consensus 56.8 8.3 0.00018 40.7 2.6 37 157-215 407-443 (964)
42 cd00491 4Oxalocrotonate_Tautom 55.9 46 0.00099 21.8 5.4 39 6-44 3-41 (58)
43 PTZ00397 macrophage migration 52.4 39 0.00085 25.9 5.2 29 16-44 71-99 (116)
44 PRK00745 4-oxalocrotonate taut 52.0 48 0.001 22.2 5.1 38 7-44 5-42 (62)
45 TIGR00013 taut 4-oxalocrotonat 51.4 59 0.0013 21.8 5.5 39 6-44 3-42 (63)
46 KOG3514|consensus 45.6 15 0.00032 39.5 2.3 42 152-215 1014-1056(1591)
47 PF06816 NOD: NOTCH protein; 45.4 48 0.001 23.0 4.2 32 4-37 7-38 (57)
48 PRK02289 4-oxalocrotonate taut 43.0 88 0.0019 21.1 5.3 38 7-44 5-42 (60)
49 COG1669 Predicted nucleotidylt 41.8 1.6E+02 0.0035 22.7 9.3 50 16-67 4-54 (97)
50 COG2888 Predicted Zn-ribbon RN 40.8 12 0.00026 26.5 0.6 13 196-210 48-61 (61)
51 KOG1226|consensus 40.8 46 0.00099 34.4 4.9 16 200-215 567-582 (783)
52 PF01282 Ribosomal_S24e: Ribos 38.3 42 0.0009 25.0 3.2 29 21-49 13-41 (84)
53 KOG1214|consensus 37.1 48 0.001 35.0 4.4 16 196-211 806-821 (1289)
54 cd05403 NT_KNTase_like Nucleot 33.8 1.6E+02 0.0035 20.4 5.7 44 23-67 4-48 (93)
55 KOG3424|consensus 31.6 81 0.0018 25.5 4.0 46 4-49 3-63 (132)
56 PF01414 DSL: Delta serrate li 31.2 17 0.00036 25.7 0.1 13 200-212 51-63 (63)
57 KOG0994|consensus 29.6 41 0.00089 36.7 2.6 19 197-215 932-950 (1758)
58 PF04863 EGF_alliinase: Alliin 29.2 17 0.00037 25.4 -0.1 19 197-215 34-52 (56)
59 PF15500 Toxin_39: Putative RN 28.0 47 0.001 25.4 2.0 22 147-168 16-37 (96)
60 PRK01271 4-oxalocrotonate taut 27.9 2E+02 0.0042 21.0 5.3 41 6-47 4-45 (76)
61 PF11403 Yeast_MT: Yeast metal 27.1 28 0.0006 22.1 0.5 14 158-171 8-21 (40)
62 PF06247 Plasmod_Pvs28: Plasmo 25.1 31 0.00068 29.9 0.7 35 161-212 49-83 (197)
63 cd01328 FSL_SPARC Follistatin- 24.5 80 0.0017 23.8 2.8 16 158-173 1-16 (86)
64 PF02594 DUF167: Uncharacteris 24.4 65 0.0014 23.6 2.2 24 24-47 43-66 (77)
65 KOG4260|consensus 24.1 40 0.00086 31.1 1.2 34 155-210 235-270 (350)
66 KOG4004|consensus 22.3 1.2E+02 0.0026 26.9 3.7 20 155-174 49-68 (259)
67 PRK01310 hypothetical protein; 21.0 1E+02 0.0022 23.9 2.8 25 23-47 54-78 (104)
68 PF01361 Tautomerase: Tautomer 20.8 2.4E+02 0.0052 18.6 4.4 32 12-44 10-41 (60)
69 KOG3607|consensus 20.6 92 0.002 32.1 3.1 19 197-215 640-658 (716)
70 TIGR01763 MalateDH_bact malate 20.3 2.1E+02 0.0044 25.9 5.1 38 11-48 132-173 (305)
No 1
>KOG4289|consensus
Probab=99.97 E-value=2.1e-31 Score=268.90 Aligned_cols=157 Identities=49% Similarity=0.875 Sum_probs=142.3
Q ss_pred CCcceEEEEecCCChhhhhHHHHHHHHHHHHhhCCCCCCcEEEEEeeecCCCCCCeeEEEEEEEc-CCCCcCChHHHHHH
Q psy2064 1 MLFNSITVRLDDMTKEAFLSPLLNFFMDGLAAIIPCPRENIYLFSIQDDTDVTSRILNVSFSARA-SDGTFYPPQFLQER 79 (221)
Q Consensus 1 ml~nSvtiR~~~~t~EeFl~~~~~~f~~~La~~l~~~~~~V~IfSvq~~~~~~~~~lDV~fav~~-s~~~y~~p~~l~~~ 79 (221)
||.||+|+||++|++|+||++.+.+|++++|.++++++++|+||.||+++++.+ .|+|.|++++ ..++|++.|.|+++
T Consensus 1084 ~Lt~S~TlrLe~Ms~e~FlsPLl~rF~eavaa~l~t~p~dv~vfnvq~dtD~~~-ilNvs~s~~~rgvrgw~~sE~lqE~ 1162 (2531)
T KOG4289|consen 1084 MLTNSITLRLENMSQERFLSPLLGRFREAVAAVLATPPDDVFVFNVQNDTDVVG-ILNVSFSALGRGVRGWFPSEDLQEQ 1162 (2531)
T ss_pred HhccceEeEhhhcCHhHhhhHHHHHHHHHHHHHhcCCcccEEEEeccccCCcce-EEEEEEeccCCcccccccHHHHHHH
Confidence 799999999999999999999999999999999999999999999999887655 9999999986 23479999999999
Q ss_pred HHHhHHHHHhhhhhhHHHhhhhhhhhhhhcceeeeeeccccccceeeecCCccceeeecccceeecCcceeecCCCCCCC
Q psy2064 80 VYLNRGILARLATVQERVYLNRGILARLATVQSATLSIDECDTELVVRHGSTLGTFCANTSSYVLDSKEVEVLPFDDNLC 159 (221)
Q Consensus 80 l~~~r~~L~~~~~~~~~~~~~~~~~e~~lg~~i~~v~~deC~~~~~~~~~s~~~~~~~~~~s~v~~~~~~~v~p~~~~~C 159 (221)
||. |+.++.+ .|+||.+|.|
T Consensus 1163 iy~----L~~~sll--------------------------------------------------------~VlpfdDniC 1182 (2531)
T KOG4289|consen 1163 IYL----LTAISLL--------------------------------------------------------RVLPFDDNIC 1182 (2531)
T ss_pred HHH----HHHhhhe--------------------------------------------------------eeeeccCchh
Confidence 987 4332222 6788999999
Q ss_pred CCCCCCCCcEEccceeccCCCccccccceeeeccCCCCcceeeCCCCCCCCCcc--cc-ccc
Q psy2064 160 VQEPCLNYEQCVTVLKFGNASGFVASDSVLFRPIYPVSTFACVHPDKFYDGLDS--IL-TTS 218 (221)
Q Consensus 160 ~~~PC~ngg~Cv~~~~~~~~~~~~~s~~~~f~~~~~~~~y~C~CP~Gf~G~~~~--~~-~~~ 218 (221)
.++||.|++.|++++||..+.+|++|+++|||||+|+++++|+||+||||.+|+ |+ |-+
T Consensus 1183 lrEPCenymkCvsvlrFdssapf~~s~s~lfRpi~pvnglrCrCPpGFTgd~CeTeiDlCYs 1244 (2531)
T KOG4289|consen 1183 LREPCENYMKCVSVLRFDSSAPFLASDSVLFRPIHPVNGLRCRCPPGFTGDYCETEIDLCYS 1244 (2531)
T ss_pred hcchhHHHHhhhhheeecccCccccccceeeeeccccCceeEeCCCCCCcccccchhHhhhc
Confidence 999999999999999999999999999999999999999999999999999998 54 543
No 2
>KOG1219|consensus
Probab=99.89 E-value=8.7e-23 Score=212.56 Aligned_cols=176 Identities=21% Similarity=0.355 Sum_probs=144.4
Q ss_pred CCcceEEEEecCCChhhhhHHHHHHHHHHHHhhCCCCCCc-EEEEEeeecCCCCCCeeEEEEEEEcCCCCcCChHHHHHH
Q psy2064 1 MLFNSITVRLDDMTKEAFLSPLLNFFMDGLAAIIPCPREN-IYLFSIQDDTDVTSRILNVSFSARASDGTFYPPQFLQER 79 (221)
Q Consensus 1 ml~nSvtiR~~~~t~EeFl~~~~~~f~~~La~~l~~~~~~-V~IfSvq~~~~~~~~~lDV~fav~~s~~~y~~p~~l~~~ 79 (221)
||+|+|+|||+++|+|||+++||+.|+|+|+..|+.++.+ |+++|+|++. +..++||+++++++.++||+++.|..+
T Consensus 3493 ~l~haV~IrfrnlTpeefv~~h~r~fRRils~~ld~rr~dsiqliSlQ~v~--gt~~VdvLl~ve~~g~tf~ktd~l~sk 3570 (4289)
T KOG1219|consen 3493 MLQHAVEIRFRNLTPEEFVGDHWRNFRRILSHELDFRRVDSIQLISLQPVE--GTQDVDVLLLVEGHGSTFYKTDALASK 3570 (4289)
T ss_pred HhcCeEEEEEecCCHHHHhhhhhhhHHHHHHHhhccccccceeeEEeeecC--CCCceeEEEEEccCCcceecHHHHHHH
Confidence 7999999999999999999999999999999999999988 9999999542 245799999999998899999999999
Q ss_pred HHHhHHHHHhhhhhhHHHhhhhhhhhhhhcceeeeee--ccccccceeeecCCccceeeecccceeecCcce--------
Q psy2064 80 VYLNRGILARLATVQERVYLNRGILARLATVQSATLS--IDECDTELVVRHGSTLGTFCANTSSYVLDSKEV-------- 149 (221)
Q Consensus 80 l~~~r~~L~~~~~~~~~~~~~~~~~e~~lg~~i~~v~--~deC~~~~~~~~~s~~~~~~~~~~s~v~~~~~~-------- 149 (221)
|...++++++..+ +|| .++.+.+++.. ...|...+.+ ..+...++++++.|||.+.+..
T Consensus 3571 I~ns~~~men~~~-rmr---------~~fqm~C~g~dC~~q~C~e~V~l-de~v~stvSTarlSfvtPrh~r~a~ClC~~ 3639 (4289)
T KOG1219|consen 3571 IENSIEKMENIGG-RMR---------LLFQMSCTGLDCQGQRCSEQVSL-DEEVKSTVSTARLSFVTPRHHRTAACLCNR 3639 (4289)
T ss_pred hhhHHHHHHHHHH-HHH---------HHHHhhccCCcCCcceeeeeeee-ccccccccchhheeeecchhhccceeeecC
Confidence 9999999987765 344 33444444443 3466665533 3445678999999999887532
Q ss_pred eecCCCCCCCCCCCCCCCcEEccceeccCCCccccccceeeeccCCCCcceeeCCCCCCC
Q psy2064 150 EVLPFDDNLCVQEPCLNYEQCVTVLKFGNASGFVASDSVLFRPIYPVSTFACVHPDKFYD 209 (221)
Q Consensus 150 ~v~p~~~~~C~~~PC~ngg~Cv~~~~~~~~~~~~~s~~~~f~~~~~~~~y~C~CP~Gf~G 209 (221)
+.||...+.|.+.||+.++.|++..- ..+|.|+||.|.-|
T Consensus 3640 G~Cp~~~~~C~~~pcp~~~~Cvs~~~--------------------~~~~~cVcP~gr~g 3679 (4289)
T KOG1219|consen 3640 GFCPVETNQCAKSPCPAGNLCVSSVH--------------------NSTYTCVCPIGRFG 3679 (4289)
T ss_pred CcCCcccCccccCCCcccCccccccc--------------------ccceeEeccCcccc
Confidence 56899999999999999999999632 34799999999544
No 3
>PF00008 EGF: EGF-like domain This is a sub-family of the Pfam entry This is a sub-family of the Pfam entry; InterPro: IPR006209 A sequence of about thirty to forty amino-acid residues long found in the sequence of epidermal growth factor (EGF) has been shown [, , , , ] to be present, in a more or less conserved form, in a large number of other, mostly animal proteins. The list of proteins currently known to contain one or more copies of an EGF-like pattern is large and varied. The functional significance of EGF domains in what appear to be unrelated proteins is not yet clear. However, a common feature is that these repeats are found in the extracellular domain of membrane-bound proteins or in proteins known to be secreted (exception: prostaglandin G/H synthase). The EGF domain includes six cysteine residues which have been shown (in EGF) to be involved in disulphide bonds. The main structure is a two-stranded beta-sheet followed by a loop to a C-terminal short two-stranded sheet. Subdomains between the conserved cysteines vary in length.; GO: 0005515 protein binding; PDB: 1WHE_A 1CCF_A 1APO_A 1WHF_A 2VJ3_A 1TOZ_A 4D90_B 3CFW_A 1EDM_B 1IXA_A ....
Probab=98.71 E-value=5.8e-09 Score=64.60 Aligned_cols=32 Identities=22% Similarity=0.605 Sum_probs=28.1
Q ss_pred CCCCCCCCCcEEccceeccCCCccccccceeeeccCCCCcceeeCCCCCCCCC
Q psy2064 159 CVQEPCLNYEQCVTVLKFGNASGFVASDSVLFRPIYPVSTFACVHPDKFYDGL 211 (221)
Q Consensus 159 C~~~PC~ngg~Cv~~~~~~~~~~~~~s~~~~f~~~~~~~~y~C~CP~Gf~G~~ 211 (221)
|..+||.|+|+|++.. ..+|.|+||+||+|++
T Consensus 1 C~~~~C~n~g~C~~~~---------------------~~~y~C~C~~G~~G~~ 32 (32)
T PF00008_consen 1 CSSNPCQNGGTCIDLP---------------------GGGYTCECPPGYTGKR 32 (32)
T ss_dssp TTTTSSTTTEEEEEES---------------------TSEEEEEEBTTEESTT
T ss_pred CCCCcCCCCeEEEeCC---------------------CCCEEeECCCCCccCC
Confidence 7788999999999862 3689999999999985
No 4
>KOG1219|consensus
Probab=98.52 E-value=1e-07 Score=102.42 Aligned_cols=62 Identities=24% Similarity=0.421 Sum_probs=48.5
Q ss_pred cceeeecccceeecCcceeecCCCCCCCCCCCCCCCcEEccceeccCCCccccccceeeeccCCCCcceeeCCCCCCCCC
Q psy2064 132 LGTFCANTSSYVLDSKEVEVLPFDDNLCVQEPCLNYEQCVTVLKFGNASGFVASDSVLFRPIYPVSTFACVHPDKFYDGL 211 (221)
Q Consensus 132 ~~~~~~~~~s~v~~~~~~~v~p~~~~~C~~~PC~ngg~Cv~~~~~~~~~~~~~s~~~~f~~~~~~~~y~C~CP~Gf~G~~ 211 (221)
.|-.|...+-|.. +.|....++|..+||++||+|++. -++|.|.||.||||.+
T Consensus 3884 ggy~CkCpsqysG-----~~CEi~~epC~snPC~~GgtCip~----------------------~n~f~CnC~~gyTG~~ 3936 (4289)
T KOG1219|consen 3884 GGYKCKCPSQYSG-----NHCEIDLEPCASNPCLTGGTCIPF----------------------YNGFLCNCPNGYTGKR 3936 (4289)
T ss_pred CceEEeCcccccC-----cccccccccccCCCCCCCCEEEec----------------------CCCeeEeCCCCccCce
Confidence 3466776666652 345568899999999999999986 4699999999999999
Q ss_pred cccc----ccccC
Q psy2064 212 DSIL----TTSNV 220 (221)
Q Consensus 212 ~~~~----~~~~~ 220 (221)
|+-. |.-|+
T Consensus 3937 Ce~~Gi~eCs~n~ 3949 (4289)
T KOG1219|consen 3937 CEARGISECSKNV 3949 (4289)
T ss_pred eeccccccccccc
Confidence 9854 65553
No 5
>smart00179 EGF_CA Calcium-binding EGF-like domain.
Probab=98.04 E-value=6.4e-06 Score=51.24 Aligned_cols=36 Identities=25% Similarity=0.560 Sum_probs=29.9
Q ss_pred CCCCCC-CCCCCCcEEccceeccCCCccccccceeeeccCCCCcceeeCCCCCC-CCCcc
Q psy2064 156 DNLCVQ-EPCLNYEQCVTVLKFGNASGFVASDSVLFRPIYPVSTFACVHPDKFY-DGLDS 213 (221)
Q Consensus 156 ~~~C~~-~PC~ngg~Cv~~~~~~~~~~~~~s~~~~f~~~~~~~~y~C~CP~Gf~-G~~~~ 213 (221)
.+.|.. .||.+++.|+.. ..+|.|.||+||. |.+|.
T Consensus 2 ~~~C~~~~~C~~~~~C~~~----------------------~g~~~C~C~~g~~~g~~C~ 39 (39)
T smart00179 2 IDECASGNPCQNGGTCVNT----------------------VGSYRCECPPGYTDGRNCE 39 (39)
T ss_pred cccCcCCCCcCCCCEeECC----------------------CCCeEeECCCCCccCCcCC
Confidence 357877 899999999875 4589999999999 88773
No 6
>cd00054 EGF_CA Calcium-binding EGF-like domain, present in a large number of membrane-bound and extracellular (mostly animal) proteins. Many of these proteins require calcium for their biological function and calcium-binding sites have been found to be located at the N-terminus of particular EGF-like domains; calcium-binding may be crucial for numerous protein-protein interactions. Six conserved core cysteines form three disulfide bridges as in non calcium-binding EGF domains, whose structures are very similar. EGF_CA can be found in tandem repeat arrangements.
Probab=97.94 E-value=1.2e-05 Score=49.11 Aligned_cols=35 Identities=26% Similarity=0.620 Sum_probs=29.5
Q ss_pred CCCCC-CCCCCCcEEccceeccCCCccccccceeeeccCCCCcceeeCCCCCCCCCcc
Q psy2064 157 NLCVQ-EPCLNYEQCVTVLKFGNASGFVASDSVLFRPIYPVSTFACVHPDKFYDGLDS 213 (221)
Q Consensus 157 ~~C~~-~PC~ngg~Cv~~~~~~~~~~~~~s~~~~f~~~~~~~~y~C~CP~Gf~G~~~~ 213 (221)
+.|.. .||.+++.|... ..+|.|.|++||.|.+|.
T Consensus 3 ~~C~~~~~C~~~~~C~~~----------------------~~~~~C~C~~g~~g~~C~ 38 (38)
T cd00054 3 DECASGNPCQNGGTCVNT----------------------VGSYRCSCPPGYTGRNCE 38 (38)
T ss_pred ccCCCCCCcCCCCEeECC----------------------CCCeEeECCCCCcCCcCC
Confidence 57877 799999999875 357999999999998763
No 7
>cd00053 EGF Epidermal growth factor domain, found in epidermal growth factor (EGF) presents in a large number of proteins, mostly animal; the list of proteins currently known to contain one or more copies of an EGF-like pattern is large and varied; the functional significance of EGF-like domains in what appear to be unrelated proteins is not yet clear; a common feature is that these repeats are found in the extracellular domain of membrane-bound proteins or in proteins known to be secreted (exception: prostaglandin G/H synthase); the domain includes six cysteine residues which have been shown to be involved in disulfide bonds; the main structure is a two-stranded beta-sheet followed by a loop to a C-terminal short two-stranded sheet; Subdomains between the conserved cysteines vary in length; the region between the 5th and 6th cysteine contains two conserved glycines of which at least one is present in most EGF-like domains; a subset of these bind calcium.
Probab=97.75 E-value=3.9e-05 Score=46.08 Aligned_cols=32 Identities=28% Similarity=0.690 Sum_probs=27.0
Q ss_pred CC-CCCCCCCcEEccceeccCCCccccccceeeeccCCCCcceeeCCCCCCCC-Cc
Q psy2064 159 CV-QEPCLNYEQCVTVLKFGNASGFVASDSVLFRPIYPVSTFACVHPDKFYDG-LD 212 (221)
Q Consensus 159 C~-~~PC~ngg~Cv~~~~~~~~~~~~~s~~~~f~~~~~~~~y~C~CP~Gf~G~-~~ 212 (221)
|. ..||.+++.|+.. ..+|.|.||.||.|. .|
T Consensus 2 C~~~~~C~~~~~C~~~----------------------~~~~~C~C~~g~~g~~~C 35 (36)
T cd00053 2 CAASNPCSNGGTCVNT----------------------PGSYRCVCPPGYTGDRSC 35 (36)
T ss_pred CCCCCCCCCCCEEecC----------------------CCCeEeECCCCCcccCCc
Confidence 55 7899999999875 357999999999998 54
No 8
>smart00181 EGF Epidermal growth factor-like domain.
Probab=97.56 E-value=9.8e-05 Score=45.19 Aligned_cols=32 Identities=22% Similarity=0.601 Sum_probs=26.4
Q ss_pred CCCC-CCCCCCcEEccceeccCCCccccccceeeeccCCCCcceeeCCCCCCC-CCc
Q psy2064 158 LCVQ-EPCLNYEQCVTVLKFGNASGFVASDSVLFRPIYPVSTFACVHPDKFYD-GLD 212 (221)
Q Consensus 158 ~C~~-~PC~ngg~Cv~~~~~~~~~~~~~s~~~~f~~~~~~~~y~C~CP~Gf~G-~~~ 212 (221)
.|.. .||.++ .|+.. ..+|.|.|++||.| +.|
T Consensus 1 ~C~~~~~C~~~-~C~~~----------------------~~~~~C~C~~g~~g~~~C 34 (35)
T smart00181 1 ECASGGPCSNG-TCINT----------------------PGSYTCSCPPGYTGDKRC 34 (35)
T ss_pred CCCCcCCCCCC-EEECC----------------------CCCeEeECCCCCccCCcc
Confidence 3666 799999 99875 35899999999999 665
No 9
>PF12661 hEGF: Human growth factor-like EGF; PDB: 2YGQ_A 2E26_A 3A7Q_A 2YGP_A 2YGO_A 1HRE_A 1HAE_A 1HAF_A 1HRF_A.
Probab=97.25 E-value=8.5e-05 Score=37.38 Aligned_cols=13 Identities=15% Similarity=0.235 Sum_probs=10.9
Q ss_pred eeeCCCCCCCCCc
Q psy2064 200 ACVHPDKFYDGLD 212 (221)
Q Consensus 200 ~C~CP~Gf~G~~~ 212 (221)
.|+||+||+|++|
T Consensus 1 ~C~C~~G~~G~~C 13 (13)
T PF12661_consen 1 TCQCPPGWTGPNC 13 (13)
T ss_dssp EEEE-TTEETTTT
T ss_pred CccCcCCCcCCCC
Confidence 5999999999987
No 10
>KOG4289|consensus
Probab=97.10 E-value=0.00026 Score=74.86 Aligned_cols=41 Identities=20% Similarity=0.402 Sum_probs=36.7
Q ss_pred CCCCCCCCCCCCCCcEEccceeccCCCccccccceeeeccCCCCcceeeCCCCCCCCCccccc
Q psy2064 154 FDDNLCVQEPCLNYEQCVTVLKFGNASGFVASDSVLFRPIYPVSTFACVHPDKFYDGLDSILT 216 (221)
Q Consensus 154 ~~~~~C~~~PC~ngg~Cv~~~~~~~~~~~~~s~~~~f~~~~~~~~y~C~CP~Gf~G~~~~~~~ 216 (221)
...+.|-+.||-|+|+|... .++|.|+|-+||+|.+|++..
T Consensus 1237 TeiDlCYs~pC~nng~C~sr----------------------EggYtCeCrpg~tGehCEvs~ 1277 (2531)
T KOG4289|consen 1237 TEIDLCYSGPCGNNGRCRSR----------------------EGGYTCECRPGFTGEHCEVSA 1277 (2531)
T ss_pred chhHhhhcCCCCCCCceEEe----------------------cCceeEEecCCccccceeeec
Confidence 45678899999999999986 689999999999999999864
No 11
>PF07974 EGF_2: EGF-like domain; InterPro: IPR013111 A sequence of about thirty to forty amino-acid residues long found in the sequence of epidermal growth factor (EGF) has been shown [, , , , ] to be present, in a more or less conserved form, in a large number of other, mostly animal proteins. The list of proteins currently known to contain one or more copies of an EGF-like pattern is large and varied. The functional significance of EGF domains in what appear to be unrelated proteins is not yet clear. However, a common feature is that these repeats are found in the extracellular domain of membrane-bound proteins or in proteins known to be secreted (exception: prostaglandin G/H synthase). The EGF domain includes six cysteine residues which have been shown (in EGF) to be involved in disulphide bonds. The main structure is a two-stranded beta-sheet followed by a loop to a C-terminal short two-stranded sheet. Subdomains between the conserved cysteines vary in length. This entry contains EGF domains found in a variety of extracellular and membrane proteins
Probab=97.03 E-value=0.0008 Score=41.74 Aligned_cols=27 Identities=19% Similarity=0.251 Sum_probs=22.9
Q ss_pred CCCCCCcEEccceeccCCCccccccceeeeccCCCCcceeeCCCCCCCCCc
Q psy2064 162 EPCLNYEQCVTVLKFGNASGFVASDSVLFRPIYPVSTFACVHPDKFYDGLD 212 (221)
Q Consensus 162 ~PC~ngg~Cv~~~~~~~~~~~~~s~~~~f~~~~~~~~y~C~CP~Gf~G~~~ 212 (221)
+.|.+.|+|+.. ...|+|++||+|+.|
T Consensus 6 ~~C~~~G~C~~~------------------------~g~C~C~~g~~G~~C 32 (32)
T PF07974_consen 6 NICSGHGTCVSP------------------------CGRCVCDSGYTGPDC 32 (32)
T ss_pred CccCCCCEEeCC------------------------CCEEECCCCCcCCCC
Confidence 579999999853 358999999999986
No 12
>PF07645 EGF_CA: Calcium-binding EGF domain; InterPro: IPR001881 A sequence of about forty amino-acid residues found in epidermal growth factor (EGF) has been shown [, , , , , ] to be present in a large number of membrane-bound and extracellular, mostly animal, proteins. Many of these proteins require calcium for their biological function and a calcium-binding site has been found at the N terminus of some EGF-like domains []. Calcium-binding may be crucial for numerous protein-protein interactions. For human coagulation factor IX it has been shown [] that the calcium-ligands form a pentagonal bipyramid. The first, third and fourth conserved negatively charged or polar residues are side chain ligands. The latter is possibly hydroxylated (see aspartic acid and asparagine hydroxylation site) []. A conserved aromatic residue, as well as the second conserved negative residue, are thought to be involved in stabilising the calcium-binding site. As in non-calcium binding EGF-like domains, there are six conserved cysteines and the structure of both types is very similar as calcium-binding induces only strictly local structural changes []. +------------------+ +---------+ | | | | nxnnC-x(3,14)-C-x(3,7)-CxxbxxxxaxC-x(1,6)-C-x(8,13)-Cx | | +------------------+ 'n': negatively charged or polar residue [DEQN] 'b': possibly beta-hydroxylated residue [DN] 'a': aromatic amino acid 'C': cysteine, involved in disulphide bond 'x': any amino acid. ; GO: 0005509 calcium ion binding; PDB: 2VJ3_A 1TOZ_A 1LMJ_A 1UZQ_A 1UZK_A 1UZJ_B 1UZP_A 1EMO_A 1EMN_A 2RR0_A ....
Probab=96.89 E-value=0.00067 Score=43.99 Aligned_cols=30 Identities=20% Similarity=0.636 Sum_probs=24.9
Q ss_pred CCCC--CCCCCCCcEEccceeccCCCccccccceeeeccCCCCcceeeCCCCCC
Q psy2064 157 NLCV--QEPCLNYEQCVTVLKFGNASGFVASDSVLFRPIYPVSTFACVHPDKFY 208 (221)
Q Consensus 157 ~~C~--~~PC~ngg~Cv~~~~~~~~~~~~~s~~~~f~~~~~~~~y~C~CP~Gf~ 208 (221)
+.|. .++|.+++.|+.+ ..+|.|.||+||.
T Consensus 3 dEC~~~~~~C~~~~~C~N~----------------------~Gsy~C~C~~Gy~ 34 (42)
T PF07645_consen 3 DECAEGPHNCPENGTCVNT----------------------EGSYSCSCPPGYE 34 (42)
T ss_dssp STTTTTSSSSSTTSEEEEE----------------------TTEEEEEESTTEE
T ss_pred cccCCCCCcCCCCCEEEcC----------------------CCCEEeeCCCCcE
Confidence 5564 3569999999986 5799999999998
No 13
>PHA02887 EGF-like protein; Provisional
Probab=95.99 E-value=0.006 Score=48.64 Aligned_cols=39 Identities=13% Similarity=0.341 Sum_probs=29.5
Q ss_pred CCCCC---CCCCCCCcEEccceeccCCCccccccceeeeccCCCCcceeeCCCCCCCCCcccc
Q psy2064 156 DNLCV---QEPCLNYEQCVTVLKFGNASGFVASDSVLFRPIYPVSTFACVHPDKFYDGLDSIL 215 (221)
Q Consensus 156 ~~~C~---~~PC~ngg~Cv~~~~~~~~~~~~~s~~~~f~~~~~~~~y~C~CP~Gf~G~~~~~~ 215 (221)
..+|. .+-|.|| +|.=-. ....+.|.|+.||+|+||+..
T Consensus 83 f~pC~~eyk~YCiHG-~C~yI~--------------------dL~epsCrC~~GYtG~RCE~v 124 (126)
T PHA02887 83 FEKCKNDFNDFCING-ECMNII--------------------DLDEKFCICNKGYTGIRCDEV 124 (126)
T ss_pred ccccChHhhCEeeCC-EEEccc--------------------cCCCceeECCCCcccCCCCcc
Confidence 46785 5679975 997532 245789999999999999854
No 14
>PHA03099 epidermal growth factor-like protein (EGF-like protein); Provisional
Probab=95.75 E-value=0.0066 Score=49.16 Aligned_cols=38 Identities=16% Similarity=0.282 Sum_probs=29.4
Q ss_pred CCCCC---CCCCCCCcEEccceeccCCCccccccceeeeccCCCCcceeeCCCCCCCCCccc
Q psy2064 156 DNLCV---QEPCLNYEQCVTVLKFGNASGFVASDSVLFRPIYPVSTFACVHPDKFYDGLDSI 214 (221)
Q Consensus 156 ~~~C~---~~PC~ngg~Cv~~~~~~~~~~~~~s~~~~f~~~~~~~~y~C~CP~Gf~G~~~~~ 214 (221)
...|. ++-|.|| +|.=-. ....+.|.|+.||+|.||+.
T Consensus 42 i~~Cp~ey~~YClHG-~C~yI~--------------------dl~~~~CrC~~GYtGeRCEh 82 (139)
T PHA03099 42 IRLCGPEGDGYCLHG-DCIHAR--------------------DIDGMYCRCSHGYTGIRCQH 82 (139)
T ss_pred cccCChhhCCEeECC-EEEeec--------------------cCCCceeECCCCcccccccc
Confidence 46674 5679998 897532 24578999999999999974
No 15
>KOG3516|consensus
Probab=94.29 E-value=0.038 Score=58.18 Aligned_cols=42 Identities=26% Similarity=0.452 Sum_probs=34.2
Q ss_pred ecCCCCCCCCCCCCCCCcEEccceeccCCCccccccceeeeccCCCCcceeeCC-CCCCCCCccc
Q psy2064 151 VLPFDDNLCVQEPCLNYEQCVTVLKFGNASGFVASDSVLFRPIYPVSTFACVHP-DKFYDGLDSI 214 (221)
Q Consensus 151 v~p~~~~~C~~~PC~ngg~Cv~~~~~~~~~~~~~s~~~~f~~~~~~~~y~C~CP-~Gf~G~~~~~ 214 (221)
+-|.-..-|++.||+|||+|++. -.+|.|-|- ..|+||.|.-
T Consensus 950 v~~GC~GhCss~~C~NGG~Cver----------------------y~gytCDCs~Tay~Gp~Cs~ 992 (1306)
T KOG3516|consen 950 VSPGCEGHCSSYPCLNGGHCVER----------------------YDGYTCDCSRTAYDGPFCSK 992 (1306)
T ss_pred ccCCCccccccccccCCCEEEEe----------------------cCceeeccccCcCCCCcccc
Confidence 34445568999999999999986 359999997 4699999973
No 16
>PF12947 EGF_3: EGF domain; InterPro: IPR024731 This entry represents an EGF domain found in the the C terminus of malarial parasite merozoite surface protein 1 [], as well as other proteins.; PDB: 2NPR_A 1N1I_C 1B9W_A 1YO8_A 2RHP_A.
Probab=93.30 E-value=0.032 Score=35.39 Aligned_cols=27 Identities=11% Similarity=0.391 Sum_probs=20.0
Q ss_pred CCCCCCcEEccceeccCCCccccccceeeeccCCCCcceeeCCCCCCCC
Q psy2064 162 EPCLNYEQCVTVLKFGNASGFVASDSVLFRPIYPVSTFACVHPDKFYDG 210 (221)
Q Consensus 162 ~PC~ngg~Cv~~~~~~~~~~~~~s~~~~f~~~~~~~~y~C~CP~Gf~G~ 210 (221)
..|....+|..+ ...|.|+|++||.|.
T Consensus 6 ~~C~~nA~C~~~----------------------~~~~~C~C~~Gy~Gd 32 (36)
T PF12947_consen 6 GGCHPNATCTNT----------------------GGSYTCTCKPGYEGD 32 (36)
T ss_dssp GGS-TTCEEEE-----------------------TTSEEEEE-CEEECC
T ss_pred CCCCCCcEeecC----------------------CCCEEeECCCCCccC
Confidence 468888999876 347999999999996
No 17
>KOG3514|consensus
Probab=93.28 E-value=0.048 Score=57.09 Aligned_cols=35 Identities=23% Similarity=0.441 Sum_probs=30.7
Q ss_pred CCCCCCCCCCcEEccceeccCCCccccccceeeeccCCCCcceeeCC-CCCCCCCccc
Q psy2064 158 LCVQEPCLNYEQCVTVLKFGNASGFVASDSVLFRPIYPVSTFACVHP-DKFYDGLDSI 214 (221)
Q Consensus 158 ~C~~~PC~ngg~Cv~~~~~~~~~~~~~s~~~~f~~~~~~~~y~C~CP-~Gf~G~~~~~ 214 (221)
.|..+||.|||.|.+. -+.|.|.|- .||.|+.|+-
T Consensus 625 ~C~~nPC~N~g~C~eg----------------------wNrfiCDCs~T~~~G~~Cer 660 (1591)
T KOG3514|consen 625 ICESNPCQNGGKCSEG----------------------WNRFICDCSGTGFEGRTCER 660 (1591)
T ss_pred ccCCCcccCCCCcccc----------------------ccccccccccCcccCccccc
Confidence 8999999999999987 357999997 5899999983
No 18
>PF12662 cEGF: Complement Clr-like EGF-like
Probab=92.92 E-value=0.057 Score=31.46 Aligned_cols=11 Identities=18% Similarity=0.776 Sum_probs=9.9
Q ss_pred cceeeCCCCCC
Q psy2064 198 TFACVHPDKFY 208 (221)
Q Consensus 198 ~y~C~CP~Gf~ 208 (221)
+|.|+||+||.
T Consensus 1 sy~C~C~~Gy~ 11 (24)
T PF12662_consen 1 SYTCSCPPGYQ 11 (24)
T ss_pred CEEeeCCCCCc
Confidence 48999999997
No 19
>KOG3516|consensus
Probab=92.91 E-value=0.066 Score=56.45 Aligned_cols=36 Identities=17% Similarity=0.467 Sum_probs=32.4
Q ss_pred CCCCCCCCCCCCcEEccceeccCCCccccccceeeeccCCCCcceeeCC-CCCCCCCcc
Q psy2064 156 DNLCVQEPCLNYEQCVTVLKFGNASGFVASDSVLFRPIYPVSTFACVHP-DKFYDGLDS 213 (221)
Q Consensus 156 ~~~C~~~PC~ngg~Cv~~~~~~~~~~~~~s~~~~f~~~~~~~~y~C~CP-~Gf~G~~~~ 213 (221)
.+.|.++||++||.|+... ..|.|-|- .||.|.-||
T Consensus 545 ~drClPN~CehgG~C~Qs~----------------------~~f~C~C~~TGY~GatCH 581 (1306)
T KOG3516|consen 545 SDRCLPNPCEHGGKCSQSW----------------------DDFECNCELTGYKGATCH 581 (1306)
T ss_pred ccccCCccccCCCcccccc----------------------cceeEecccccccccccc
Confidence 5799999999999999852 47999999 999999999
No 20
>KOG1217|consensus
Probab=90.73 E-value=0.23 Score=45.18 Aligned_cols=36 Identities=31% Similarity=0.576 Sum_probs=29.9
Q ss_pred CCCCCCCCC-CCCCcEEccceeccCCCccccccceeeeccCCCCcceeeCCCCCCCCCc
Q psy2064 155 DDNLCVQEP-CLNYEQCVTVLKFGNASGFVASDSVLFRPIYPVSTFACVHPDKFYDGLD 212 (221)
Q Consensus 155 ~~~~C~~~P-C~ngg~Cv~~~~~~~~~~~~~s~~~~f~~~~~~~~y~C~CP~Gf~G~~~ 212 (221)
..+.|...+ |.|+++|+.. ...|.|.||+||+|..+
T Consensus 270 ~~~~C~~~~~c~~~~~C~~~----------------------~~~~~C~C~~g~~g~~~ 306 (487)
T KOG1217|consen 270 DVDSCALIASCPNGGTCVNV----------------------PGSYRCTCPPGFTGRLC 306 (487)
T ss_pred eccccCCCCccCCCCeeecC----------------------CCcceeeCCCCCCCCCC
Confidence 457888764 9999999975 22499999999999998
No 21
>PF11548 Receptor_IA-2: Protein-tyrosine phosphatase receptor IA-2; InterPro: IPR021613 IA-2 is a protein-tyrosine phosphatase receptor that upon exocytosis, the cytoplasmic domain is cleaved and moves to the nucleus where it enhances transcription of the insulin gene. The mature exodomain of IA-2 participates in adhesion to the extracellular matrix and is self-proteolyzed in vitro by reactive oxygen species which may be a new shedding mechanism. ; PDB: 2QT7_B 3N01_B 3N4W_B 3NG8_A.
Probab=89.56 E-value=2 Score=32.90 Aligned_cols=78 Identities=15% Similarity=0.157 Sum_probs=52.3
Q ss_pred hhhhhHHH-HHHHHHHHHhhCCCCCCcEEEEEeeecCCCCCCeeEEEEEEEcCCCCcCChHHHHHHHHHhHHHHHhhhhh
Q psy2064 15 KEAFLSPL-LNFFMDGLAAIIPCPRENIYLFSIQDDTDVTSRILNVSFSARASDGTFYPPQFLQERVYLNRGILARLATV 93 (221)
Q Consensus 15 ~EeFl~~~-~~~f~~~La~~l~~~~~~V~IfSvq~~~~~~~~~lDV~fav~~s~~~y~~p~~l~~~l~~~r~~L~~~~~~ 93 (221)
..++++.. =.++++.|+++++++.....=+||... .|.|=|+..+- =+....+.++...++.+|
T Consensus 10 ~nd~ls~~~G~~l~~~la~~l~l~s~~F~~i~V~g~--------avTFrv~~N~~-n~taadVa~~a~~~K~~L------ 74 (91)
T PF11548_consen 10 GNDPLSWDEGSRLMEKLAELLHLPSSSFINISVVGP--------AVTFRVRPNNK-NLTAADVAKQAVDNKNQL------ 74 (91)
T ss_dssp S-TT--HHHHHHHHHHHHHHHTS-GGGEEEEEEETT--------EEEEEE---TT----HHHHHHHHHHTHHHH------
T ss_pred CCCCCCHHHHHHHHHHHHHHhCCCcccceeeeecCc--------eEEEEeccCcC-CCCHHHHHHHHHHhHHHH------
Confidence 34666652 356899999999999888888888832 37788876653 677888888888889999
Q ss_pred hHHHhhhhhhhhhhhcceeeeeecc
Q psy2064 94 QERVYLNRGILARLATVQSATLSID 118 (221)
Q Consensus 94 ~~~~~~~~~~~e~~lg~~i~~v~~d 118 (221)
|+.+|+.|.+-++.
T Consensus 75 -----------e~~tG~~Iv~tGvG 88 (91)
T PF11548_consen 75 -----------EKETGLKIVQTGVG 88 (91)
T ss_dssp -----------HHHHSS-EEEEEEE
T ss_pred -----------HHhhCcEEeecccc
Confidence 89999999876653
No 22
>cd01475 vWA_Matrilin VWA_Matrilin: In cartilaginous plate, extracellular matrix molecules mediate cell-matrix and matrix-matrix interactions thereby providing tissue integrity. Some members of the matrilin family are expressed specifically in developing cartilage rudiments. The matrilin family consists of at least four members. All the members of the matrilin family contain VWA domains, EGF-like domains and a heptad repeat coiled-coiled domain at the carboxy terminus which is responsible for the oligomerization of the matrilins. The VWA domains have been shown to be essential for matrilin network formation by interacting with matrix ligands.
Probab=89.26 E-value=0.37 Score=41.17 Aligned_cols=32 Identities=16% Similarity=0.250 Sum_probs=19.8
Q ss_pred ChhhhhHHHHHHHHHHHHhhCCCCCCcEEEEEee
Q psy2064 14 TKEAFLSPLLNFFMDGLAAIIPCPRENIYLFSIQ 47 (221)
Q Consensus 14 t~EeFl~~~~~~f~~~La~~l~~~~~~V~IfSvq 47 (221)
.+++| ...+.|...|.+.|...++.++|-=|+
T Consensus 16 ~~~~~--~~~k~f~~~l~~~l~~~~~~~rvglv~ 47 (224)
T cd01475 16 RPENF--ELVKQFLNQIIDSLDVGPDATRVGLVQ 47 (224)
T ss_pred CHHHH--HHHHHHHHHHHHhcccCCCccEEEEEE
Confidence 45555 235566666666677777666666666
No 23
>PF09064 Tme5_EGF_like: Thrombomodulin like fifth domain, EGF-like; InterPro: IPR015149 This domain adopts a fold similar to other EGF domains, with a flat major and a twisted minor beta sheet. Disulphide pairing, however, is not of the usual 1-3, 2-4, 5-6 type; rather 1-2, 3-4, 5-6 pairing is found. Its extended major sheet (strands beta-2 and beta-3 and the connecting loop) projects into thrombin's active site groove. This domain is required for interaction of thrombomodulin with thrombin, and subsequent activation of protein-C []. ; GO: 0004888 transmembrane signaling receptor activity, 0016021 integral to membrane
Probab=88.62 E-value=0.32 Score=30.69 Aligned_cols=12 Identities=25% Similarity=0.578 Sum_probs=10.0
Q ss_pred CcceeeCCCCCC
Q psy2064 197 STFACVHPDKFY 208 (221)
Q Consensus 197 ~~y~C~CP~Gf~ 208 (221)
....|.||+||-
T Consensus 16 ~~~~C~CPeGyI 27 (34)
T PF09064_consen 16 SPGQCFCPEGYI 27 (34)
T ss_pred CCCceeCCCceE
Confidence 467999999993
No 24
>PF00954 S_locus_glycop: S-locus glycoprotein family; InterPro: IPR000858 In Brassicaceae, self-incompatible plants have a self/non-self recognition system, which involves the inability of flowering plants to achieve self-fertilisation. This is sporophytically controlled by multiple alleles at a single locus (S). There are a total of 50 different S alleles in Brassica oleracea. S-locus glycoproteins, as well as S-receptor kinases, are in linkage with the S-alleles []. Most of the proteins within this family contain apple-like domain (IPR003609 from INTERPRO), which is predicted to possess protein- and/or carbohydrate-binding functions.; GO: 0048544 recognition of pollen
Probab=87.89 E-value=0.54 Score=36.05 Aligned_cols=31 Identities=16% Similarity=0.227 Sum_probs=24.2
Q ss_pred CCCCCC-CCCCCCCcEEccceeccCCCccccccceeeeccCCCCcceeeCCCCCC
Q psy2064 155 DDNLCV-QEPCLNYEQCVTVLKFGNASGFVASDSVLFRPIYPVSTFACVHPDKFY 208 (221)
Q Consensus 155 ~~~~C~-~~PC~ngg~Cv~~~~~~~~~~~~~s~~~~f~~~~~~~~y~C~CP~Gf~ 208 (221)
+.+.|. ...|-.+|.|... ....|.|++||.
T Consensus 76 p~d~Cd~y~~CG~~g~C~~~-----------------------~~~~C~Cl~GF~ 107 (110)
T PF00954_consen 76 PKDQCDVYGFCGPNGICNSN-----------------------NSPKCSCLPGFE 107 (110)
T ss_pred cccCCCCccccCCccEeCCC-----------------------CCCceECCCCcC
Confidence 557885 6899999999653 234599999996
No 25
>PF14670 FXa_inhibition: Coagulation Factor Xa inhibitory site; PDB: 3Q3K_B 1NFY_B 1LQD_A 1G2L_B 1IQF_L 2UWP_B 2VH6_B 3KQC_L 2P93_L 2BQW_A ....
Probab=83.02 E-value=0.65 Score=29.42 Aligned_cols=12 Identities=17% Similarity=0.678 Sum_probs=9.6
Q ss_pred CcceeeCCCCCC
Q psy2064 197 STFACVHPDKFY 208 (221)
Q Consensus 197 ~~y~C~CP~Gf~ 208 (221)
.+|+|.||+||.
T Consensus 17 g~~~C~C~~Gy~ 28 (36)
T PF14670_consen 17 GSYRCSCPPGYK 28 (36)
T ss_dssp TSEEEE-STTEE
T ss_pred CceEeECCCCCE
Confidence 479999999995
No 26
>PF01683 EB: EB module; InterPro: IPR006149 The EB domain has no known function. It is found in several Caenorhabditis sp. and Drosophila sp. proteins. The domain contains 8 conserved cysteines that probably form four disulphide bridges and is found associated with kunitz domains IPR002223 from INTERPRO
Probab=80.39 E-value=3.6 Score=27.26 Aligned_cols=27 Identities=26% Similarity=0.645 Sum_probs=20.3
Q ss_pred CCCCC-CCCCCCCcEEccceeccCCCccccccceeeeccCCCCcceeeCCCCCC
Q psy2064 156 DNLCV-QEPCLNYEQCVTVLKFGNASGFVASDSVLFRPIYPVSTFACVHPDKFY 208 (221)
Q Consensus 156 ~~~C~-~~PC~ngg~Cv~~~~~~~~~~~~~s~~~~f~~~~~~~~y~C~CP~Gf~ 208 (221)
.+.|. .+.|..+..|+.. .|+||+||.
T Consensus 19 g~~C~~~~qC~~~s~C~~g--------------------------~C~C~~g~~ 46 (52)
T PF01683_consen 19 GESCESDEQCIGGSVCVNG--------------------------RCQCPPGYV 46 (52)
T ss_pred CCCCCCcCCCCCcCEEcCC--------------------------EeECCCCCE
Confidence 35574 6778888888542 699999984
No 27
>PF00053 Laminin_EGF: Laminin EGF-like (Domains III and V); InterPro: IPR002049 Laminins [] are the major noncollagenous components of basement membranes that mediate cell adhesion, growth migration, and differentiation. They are composed of distinct but related alpha, beta and gamma chains. The three chains form a cross-shaped molecule that consist of a long arm and three short globular arms. The long arm consist of a coiled coil structure contributed by all three chains and cross-linked by interchain disulphide bonds. Beside different types of globular domains each subunit contains, in its first half, consecutive repeats of about 60 amino acids in length that include eight conserved cysteines []. The tertiary structure [, ] of this domain is remotely similar in its N-terminal to that of the EGF-like module (see PDOC00021 from PROSITEDOC). It is known as a 'LE' or 'laminin-type EGF-like' domain. The number of copies of the LE domain in the different forms of laminins is highly variable; from 3 up to 22 copies have been found. A schematic representation of the topology of the four disulphide bonds in the LE domain is shown below. +-------------------+ +-|-----------+ | +--------+ +-----------------+ | | | | | | | | xxCxCxxxxxxxxxxxCxxxxxxxCxxCxxxxxGxxCxxCxxgaagxxxxxxxxxxxCxx sssssssssssssssssssssssssssssssssss 'C': conserved cysteine involved in a disulphide bond 'a': conserved aromatic residue 'G': conserved glycine (lower case = less conserved) 's': region similar to the EGF-like domain In mouse laminin gamma-1 chain, the seventh LE domain has been shown to be the only one that binds with a high affinity to nidogen []. The binding-sites are located on the surface within the loops C1-C3 and C5-C6 [, ]. Long consecutive arrays of LE domains in laminins form rod-like elements of limited flexibility [], which determine the spacing in the formation of laminin networks of basement membranes [].; PDB: 3TBD_A 3ZYG_B 3ZYI_B 2Y38_A 1KLO_A 1NPE_B 3ZYJ_B 1TLE_A.
Probab=80.01 E-value=1 Score=29.69 Aligned_cols=16 Identities=19% Similarity=-0.043 Sum_probs=13.8
Q ss_pred cceeeCCCCCCCCCcc
Q psy2064 198 TFACVHPDKFYDGLDS 213 (221)
Q Consensus 198 ~y~C~CP~Gf~G~~~~ 213 (221)
+.+|.|+++++|++|.
T Consensus 17 ~G~C~C~~~~~G~~C~ 32 (49)
T PF00053_consen 17 TGQCVCKPGTTGPRCD 32 (49)
T ss_dssp CEEESBSTTEESTTS-
T ss_pred CCEEeccccccCCcCc
Confidence 5689999999999998
No 28
>KOG1217|consensus
Probab=79.66 E-value=1.6 Score=39.68 Aligned_cols=36 Identities=22% Similarity=0.580 Sum_probs=28.8
Q ss_pred CCCC--CCCCCCCcEEccceeccCCCccccccceeeeccCCCCcceeeCCCCCCCCCccc
Q psy2064 157 NLCV--QEPCLNYEQCVTVLKFGNASGFVASDSVLFRPIYPVSTFACVHPDKFYDGLDSI 214 (221)
Q Consensus 157 ~~C~--~~PC~ngg~Cv~~~~~~~~~~~~~s~~~~f~~~~~~~~y~C~CP~Gf~G~~~~~ 214 (221)
+.|. ..+|.|++.|... ..+|.|.|++||.|..+.-
T Consensus 170 ~~C~~~~~~c~~~~~C~~~----------------------~~~~~C~c~~~~~~~~~~~ 207 (487)
T KOG1217|consen 170 DECIQYSSPCQNGGTCVNT----------------------GGSYLCSCPPGYTGSTCET 207 (487)
T ss_pred cccccCCCCcCCCcccccC----------------------CCCeeEeCCCCccCCcCcC
Confidence 5786 5679999999886 3358999999999987763
No 29
>smart00051 DSL delta serrate ligand.
Probab=77.72 E-value=1.9 Score=30.53 Aligned_cols=13 Identities=0% Similarity=-0.245 Sum_probs=11.9
Q ss_pred eeeCCCCCCCCCc
Q psy2064 200 ACVHPDKFYDGLD 212 (221)
Q Consensus 200 ~C~CP~Gf~G~~~ 212 (221)
.|+|++|++|+.|
T Consensus 51 ~~~C~~Gw~G~~C 63 (63)
T smart00051 51 NKGCLEGWMGPYC 63 (63)
T ss_pred CEecCCCCcCCCC
Confidence 5999999999986
No 30
>KOG1225|consensus
Probab=75.89 E-value=2.7 Score=41.37 Aligned_cols=11 Identities=27% Similarity=0.407 Sum_probs=6.4
Q ss_pred CCCCCCCCCCC
Q psy2064 157 NLCVQEPCLNY 167 (221)
Q Consensus 157 ~~C~~~PC~ng 167 (221)
..|+.--|+++
T Consensus 245 ~~c~~~~C~~~ 255 (525)
T KOG1225|consen 245 PLCSTIYCPGG 255 (525)
T ss_pred CccccccCCCC
Confidence 45665556655
No 31
>KOG1836|consensus
Probab=75.50 E-value=2 Score=47.67 Aligned_cols=36 Identities=19% Similarity=0.322 Sum_probs=30.3
Q ss_pred CCCCCCCCCCcEEccceeccCCCccccccceeeeccCCCCcceee-CCCCCCCCCcc
Q psy2064 158 LCVQEPCLNYEQCVTVLKFGNASGFVASDSVLFRPIYPVSTFACV-HPDKFYDGLDS 213 (221)
Q Consensus 158 ~C~~~PC~ngg~Cv~~~~~~~~~~~~~s~~~~f~~~~~~~~y~C~-CP~Gf~G~~~~ 213 (221)
.|.+=||++++-|...-. .....|. ||+||+|++|.
T Consensus 776 dC~~C~Cp~~~~~~~~~~--------------------~~~~iCk~Cp~gytG~rCe 812 (1705)
T KOG1836|consen 776 DCQPCPCPNGGACGQTPE--------------------ILEVVCKNCPPGYTGLRCE 812 (1705)
T ss_pred CCccCCCCCChhhcCcCc--------------------ccceecCCCCCCCcccccc
Confidence 399999999999987521 4467898 99999999997
No 32
>KOG1225|consensus
Probab=74.92 E-value=3.3 Score=40.86 Aligned_cols=16 Identities=19% Similarity=0.202 Sum_probs=13.4
Q ss_pred eeeCCCCCCCCCcccc
Q psy2064 200 ACVHPDKFYDGLDSIL 215 (221)
Q Consensus 200 ~C~CP~Gf~G~~~~~~ 215 (221)
.|+|++||.|..|++.
T Consensus 297 ~CiC~~g~~G~dCs~~ 312 (525)
T KOG1225|consen 297 ECICNPGYSGKDCSIR 312 (525)
T ss_pred EeecCCCccccccccc
Confidence 7999999999888765
No 33
>cd00055 EGF_Lam Laminin-type epidermal growth factor-like domain; laminins are the major noncollagenous components of basement membranes that mediate cell adhesion, growth migration, and differentiation; the laminin-type epidermal growth factor-like module occurs in tandem arrays; the domain contains 4 disulfide bonds (loops a-d) the first three resemble epidermal growth factor (EGF); the number of copies of this domain in the different forms of laminins is highly variable ranging from 3 up to 22 copies
Probab=68.03 E-value=4.9 Score=26.61 Aligned_cols=16 Identities=13% Similarity=-0.101 Sum_probs=13.6
Q ss_pred cceeeCCCCCCCCCcc
Q psy2064 198 TFACVHPDKFYDGLDS 213 (221)
Q Consensus 198 ~y~C~CP~Gf~G~~~~ 213 (221)
+-+|.|++|++|++|.
T Consensus 18 ~G~C~C~~~~~G~~C~ 33 (50)
T cd00055 18 TGQCECKPNTTGRRCD 33 (50)
T ss_pred CCEEeCCCcCCCCCCC
Confidence 4479999999999987
No 34
>PF12946 EGF_MSP1_1: MSP1 EGF domain 1; InterPro: IPR024730 This EGF-like domain is found at the C terminus of the malaria parasite MSP1 protein. MSP1 is the merozoite surface protein 1. This domain is part of the C-terminal fragment that is proteolytically processed from the the rest of the protein and is left attached to the surface of the invading parasite [].; PDB: 1N1I_C 2FLG_A 1CEJ_A 2NPR_A 1B9W_A 1OB1_F.
Probab=65.56 E-value=4.3 Score=26.09 Aligned_cols=31 Identities=13% Similarity=0.311 Sum_probs=20.7
Q ss_pred CCCCCCCCCCcEEccceeccCCCccccccceeeeccCCCCcceeeCCCCCCC
Q psy2064 158 LCVQEPCLNYEQCVTVLKFGNASGFVASDSVLFRPIYPVSTFACVHPDKFYD 209 (221)
Q Consensus 158 ~C~~~PC~ngg~Cv~~~~~~~~~~~~~s~~~~f~~~~~~~~y~C~CP~Gf~G 209 (221)
.|.+.+||....|+... ...+.|.|..||..
T Consensus 1 ~C~~~~cP~NA~C~~~~---------------------dG~eecrCllgyk~ 31 (37)
T PF12946_consen 1 VCIDTKCPANAGCFRYD---------------------DGSEECRCLLGYKK 31 (37)
T ss_dssp S-SSS---TTEEEEEET---------------------TSEEEEEE-TTEEE
T ss_pred CccCccCCCCcccEEcC---------------------CCCEEEEeeCCccc
Confidence 37888999999998752 36789999999953
No 35
>PF08921 DUF1904: Domain of unknown function (DUF1904); InterPro: IPR015017 This entry represents a family of hypothetical bacterial proteins. ; PDB: 1U9D_B.
Probab=64.60 E-value=48 Score=25.91 Aligned_cols=71 Identities=25% Similarity=0.292 Sum_probs=42.3
Q ss_pred EEecCCChhhhhHHHHHHHHHHHHhhCCCCCCcEEEEEeeecCCCCC------CeeEEEEEEEcCCCCcCChHHHHHHHH
Q psy2064 8 VRLDDMTKEAFLSPLLNFFMDGLAAIIPCPRENIYLFSIQDDTDVTS------RILNVSFSARASDGTFYPPQFLQERVY 81 (221)
Q Consensus 8 iR~~~~t~EeFl~~~~~~f~~~La~~l~~~~~~V~IfSvq~~~~~~~------~~lDV~fav~~s~~~y~~p~~l~~~l~ 81 (221)
|||+++.. +.+...-+.+.+.|+++.+++++++.+-=+...-=.++ ..++|+. |=+++.++.+++
T Consensus 4 lr~rGi~~-e~v~~~S~~LideLa~i~~~p~e~ftlE~i~s~~i~~G~~~~~~pfVEV~W--------F~R~qe~qd~vA 74 (108)
T PF08921_consen 4 LRFRGIEE-EQVQELSKELIDELAEICGCPRENFTLEWINSTFIFDGEISEGYPFVEVLW--------FDRGQEVQDKVA 74 (108)
T ss_dssp EEEESS-H-HHHHHHHHHHHHHHHHHHT--GGG-EEEE-------TT-B-----EEEEEE--------S---HHHHHHHH
T ss_pred EEEecCCH-HHHHHHhHHHHHHHHHHHCCCcceEEEEEeceEEEEcCcccccceeEEEEE--------ecCCHHHHHHHH
Confidence 79999875 55667778899999999999999988776653110011 2466665 778888888887
Q ss_pred HhHHHH
Q psy2064 82 LNRGIL 87 (221)
Q Consensus 82 ~~r~~L 87 (221)
..-.+.
T Consensus 75 ~~It~~ 80 (108)
T PF08921_consen 75 QAITEH 80 (108)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 655444
No 36
>KOG1214|consensus
Probab=64.51 E-value=5.7 Score=41.47 Aligned_cols=37 Identities=19% Similarity=0.425 Sum_probs=30.9
Q ss_pred CCCCCCCCCCCCCcEEccceeccCCCccccccceeeeccCCCCcceeeCCCCCCCCCcc
Q psy2064 155 DDNLCVQEPCLNYEQCVTVLKFGNASGFVASDSVLFRPIYPVSTFACVHPDKFYDGLDS 213 (221)
Q Consensus 155 ~~~~C~~~PC~ngg~Cv~~~~~~~~~~~~~s~~~~f~~~~~~~~y~C~CP~Gf~G~~~~ 213 (221)
..+.|..+-|.....|+.+ .+.|+|+|-+||.|+--.
T Consensus 826 dvDeC~psrChp~A~Cynt----------------------pgsfsC~C~pGy~GDGf~ 862 (1289)
T KOG1214|consen 826 DVDECSPSRCHPAATCYNT----------------------PGSFSCRCQPGYYGDGFQ 862 (1289)
T ss_pred cccccCccccCCCceEecC----------------------CCcceeecccCccCCCce
Confidence 4588999999999999986 368999999999986433
No 37
>PRK02220 4-oxalocrotonate tautomerase; Provisional
Probab=64.09 E-value=22 Score=23.81 Aligned_cols=33 Identities=18% Similarity=0.192 Sum_probs=26.7
Q ss_pred hhhhhHHHHHHHHHHHHhhCCCCCCcEEEEEee
Q psy2064 15 KEAFLSPLLNFFMDGLAAIIPCPRENIYLFSIQ 47 (221)
Q Consensus 15 ~EeFl~~~~~~f~~~La~~l~~~~~~V~IfSvq 47 (221)
..+-....++.+.+.+++.+++++++|.|+=..
T Consensus 13 s~eqk~~l~~~it~~l~~~~~~p~~~v~V~i~e 45 (61)
T PRK02220 13 TEEQLKALVKDVTAAVSKNTGAPAEHIHVIINE 45 (61)
T ss_pred CHHHHHHHHHHHHHHHHHHhCcChhhEEEEEEE
Confidence 455666788999999999999999998876443
No 38
>PRK01964 4-oxalocrotonate tautomerase; Provisional
Probab=60.78 E-value=26 Score=23.90 Aligned_cols=41 Identities=15% Similarity=0.288 Sum_probs=29.7
Q ss_pred EEEecCCChhhhhHHHHHHHHHHHHhhCCCCCCcEEEEEee
Q psy2064 7 TVRLDDMTKEAFLSPLLNFFMDGLAAIIPCPRENIYLFSIQ 47 (221)
Q Consensus 7 tiR~~~~t~EeFl~~~~~~f~~~La~~l~~~~~~V~IfSvq 47 (221)
.|.+..-...+-....++.+.+++++.+++++++|.|+=..
T Consensus 5 ~i~l~~grt~eqk~~l~~~it~~l~~~lg~p~~~v~V~i~e 45 (64)
T PRK01964 5 QIQLLEGRPEEKIKNLIREVTEAISATLDVPKERVRVIVNE 45 (64)
T ss_pred EEEEeCCCCHHHHHHHHHHHHHHHHHHhCcChhhEEEEEEE
Confidence 34433223456667788999999999999999998866433
No 39
>smart00180 EGF_Lam Laminin-type epidermal growth factor-like domai.
Probab=58.15 E-value=7.4 Score=25.45 Aligned_cols=17 Identities=6% Similarity=-0.152 Sum_probs=13.7
Q ss_pred ceeeCCCCCCCCCccccc
Q psy2064 199 FACVHPDKFYDGLDSILT 216 (221)
Q Consensus 199 y~C~CP~Gf~G~~~~~~~ 216 (221)
-+|.|+++++|++|. +|
T Consensus 18 G~C~C~~~~~G~~C~-~C 34 (46)
T smart00180 18 GQCECKPNVTGRRCD-RC 34 (46)
T ss_pred CEEECCCCCCCCCCC-cC
Confidence 479999999998887 44
No 40
>KOG4260|consensus
Probab=56.86 E-value=8.4 Score=35.36 Aligned_cols=35 Identities=14% Similarity=0.235 Sum_probs=27.4
Q ss_pred CCCCCCCCcEEccceeccCCCccccccceeeeccCCCCcceeeCCCCCCCCCcc
Q psy2064 160 VQEPCLNYEQCVTVLKFGNASGFVASDSVLFRPIYPVSTFACVHPDKFYDGLDS 213 (221)
Q Consensus 160 ~~~PC~ngg~Cv~~~~~~~~~~~~~s~~~~f~~~~~~~~y~C~CP~Gf~G~~~~ 213 (221)
+..||..+|.|.-+.. ....-.|.|-.||+||.|-
T Consensus 148 ser~C~GnG~C~GdGs-------------------R~GsGkCkC~~GY~Gp~C~ 182 (350)
T KOG4260|consen 148 SERPCFGNGSCHGDGS-------------------REGSGKCKCETGYTGPLCR 182 (350)
T ss_pred CcCCcCCCCcccCCCC-------------------CCCCCcccccCCCCCcccc
Confidence 4578999999987532 2445589999999999986
No 41
>KOG3509|consensus
Probab=56.82 E-value=8.3 Score=40.68 Aligned_cols=37 Identities=19% Similarity=0.454 Sum_probs=31.7
Q ss_pred CCCCCCCCCCCcEEccceeccCCCccccccceeeeccCCCCcceeeCCCCCCCCCcccc
Q psy2064 157 NLCVQEPCLNYEQCVTVLKFGNASGFVASDSVLFRPIYPVSTFACVHPDKFYDGLDSIL 215 (221)
Q Consensus 157 ~~C~~~PC~ngg~Cv~~~~~~~~~~~~~s~~~~f~~~~~~~~y~C~CP~Gf~G~~~~~~ 215 (221)
..|.+-||.+++-|-+.+ -+..|.||+||+|+.|...
T Consensus 407 ~~c~~~p~~~~g~c~p~~----------------------~~~~c~c~~g~~G~~c~d~ 443 (964)
T KOG3509|consen 407 DVCWRIPCQHDGPCLQTL----------------------EGKQCLCPPGYTGDSCEDC 443 (964)
T ss_pred CccccccCCCCccccccc----------------------cccceeccccccCchhhcc
Confidence 477888999999998873 3789999999999998855
No 42
>cd00491 4Oxalocrotonate_Tautomerase 4-Oxalocrotonate Tautomerase: Catalyzes the isomerization of unsaturated ketones. The structure is a homohexamer that is arranged as a trimer of dimers. The hexamer contains six active sites, each formed by residues from three monomers, two from one dimer and the third from a neighboring monomer. Each monomer is a beta-alpha-beta fold with two small beta strands at the C-terminus that fold back on themselves. A pair of monomers form a dimer with two-fold symmetry, consisting of a 4-stranded beta sheet with two helices on one side and two additional small beta strands at each end. The dimers are assembled around a 3-fold axis of rotation to form a hexamer, with the short beta strands from each dimer contacting the neighboring dimers.
Probab=55.94 E-value=46 Score=21.81 Aligned_cols=39 Identities=10% Similarity=0.255 Sum_probs=28.5
Q ss_pred EEEEecCCChhhhhHHHHHHHHHHHHhhCCCCCCcEEEE
Q psy2064 6 ITVRLDDMTKEAFLSPLLNFFMDGLAAIIPCPRENIYLF 44 (221)
Q Consensus 6 vtiR~~~~t~EeFl~~~~~~f~~~La~~l~~~~~~V~If 44 (221)
++|.+..-...|--...++.+.+.+++.++.++++|.|.
T Consensus 3 i~i~~~~grt~eqk~~l~~~i~~~l~~~~g~~~~~v~V~ 41 (58)
T cd00491 3 VQIYILEGRTDEQKRELIERVTEAVSEILGAPEATIVVI 41 (58)
T ss_pred EEEEEcCCCCHHHHHHHHHHHHHHHHHHhCcCcccEEEE
Confidence 345544333466777788999999999999998877643
No 43
>PTZ00397 macrophage migration inhibition factor-like protein; Provisional
Probab=52.40 E-value=39 Score=25.90 Aligned_cols=29 Identities=17% Similarity=0.161 Sum_probs=23.9
Q ss_pred hhhhHHHHHHHHHHHHhhCCCCCCcEEEE
Q psy2064 16 EAFLSPLLNFFMDGLAAIIPCPRENIYLF 44 (221)
Q Consensus 16 EeFl~~~~~~f~~~La~~l~~~~~~V~If 44 (221)
.+--..+++.+-+.|++.||+++++|+|.
T Consensus 71 ~e~k~~l~~~i~~~l~~~lgi~~~rv~I~ 99 (116)
T PTZ00397 71 RSNNSSIAAAITKILASHLKVKSERVYIE 99 (116)
T ss_pred HHHHHHHHHHHHHHHHHHhCcCcccEEEE
Confidence 34455678899999999999999998863
No 44
>PRK00745 4-oxalocrotonate tautomerase; Provisional
Probab=52.00 E-value=48 Score=22.17 Aligned_cols=38 Identities=13% Similarity=0.179 Sum_probs=27.6
Q ss_pred EEEecCCChhhhhHHHHHHHHHHHHhhCCCCCCcEEEE
Q psy2064 7 TVRLDDMTKEAFLSPLLNFFMDGLAAIIPCPRENIYLF 44 (221)
Q Consensus 7 tiR~~~~t~EeFl~~~~~~f~~~La~~l~~~~~~V~If 44 (221)
.|.+..=...|-....++.+.+.+.+.+++++++|.|+
T Consensus 5 ~I~~~~grs~eqk~~l~~~it~~l~~~~~~p~~~v~V~ 42 (62)
T PRK00745 5 HIELFEGRTVEQKRKLVEEITRVTVETLGCPPESVDII 42 (62)
T ss_pred EEEEcCCCCHHHHHHHHHHHHHHHHHHcCCChhHEEEE
Confidence 44433223456667788999999999999999887554
No 45
>TIGR00013 taut 4-oxalocrotonate tautomerase family enzyme. 4-oxalocrotonate tautomerase is a homohexamer in which each monomer is very small, at about 62 amino acids. Pro-1 of the mature protein serves as a general base. The enzyme functions in meta-cleavage pathways of aromatic hydrocarbon catabolism. Because several Arg residues located near the active site in the crystal structure of Pseudomonas putida are not conserved among all members of this family, because the literature describes a general role in the isomerization of beta,gamma-unsaturated enones to their alpha,beta-isomers, and because of the presence of fairly distantly related paralogs in Campylobacter jejuni, the family is regarded as not necessarily uniform in function.
Probab=51.40 E-value=59 Score=21.76 Aligned_cols=39 Identities=10% Similarity=0.164 Sum_probs=28.3
Q ss_pred EEEEec-CCChhhhhHHHHHHHHHHHHhhCCCCCCcEEEE
Q psy2064 6 ITVRLD-DMTKEAFLSPLLNFFMDGLAAIIPCPRENIYLF 44 (221)
Q Consensus 6 vtiR~~-~~t~EeFl~~~~~~f~~~La~~l~~~~~~V~If 44 (221)
+.|.+. .-...|--...++.+.+.|++.++.+++++.|+
T Consensus 3 i~i~i~~~grt~eqK~~l~~~it~~l~~~lg~~~~~v~V~ 42 (63)
T TIGR00013 3 VNIYILKEGRTDEQKRQLIEGVTEAMAETLGANLESIVVI 42 (63)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHHHHHhCCCcccEEEE
Confidence 344554 233456666788999999999999998887754
No 46
>KOG3514|consensus
Probab=45.59 E-value=15 Score=39.49 Aligned_cols=42 Identities=14% Similarity=0.217 Sum_probs=33.7
Q ss_pred cCCCCCCCCCCCCCCCcEEccceeccCCCccccccceeeeccCCCCcceeeCCC-CCCCCCcccc
Q psy2064 152 LPFDDNLCVQEPCLNYEQCVTVLKFGNASGFVASDSVLFRPIYPVSTFACVHPD-KFYDGLDSIL 215 (221)
Q Consensus 152 ~p~~~~~C~~~PC~ngg~Cv~~~~~~~~~~~~~s~~~~f~~~~~~~~y~C~CP~-Gf~G~~~~~~ 215 (221)
|..+...|+.+-|.|.|.|+.- -++|+|.|+. .|+||+|--.
T Consensus 1014 ~sgpst~c~~~acanhG~c~q~----------------------w~~~~c~csmtS~~Gp~C~d~ 1056 (1591)
T KOG3514|consen 1014 CSGPSTTCSEDACANHGVCIQQ----------------------WNGIACDCSMTSYSGPRCNDP 1056 (1591)
T ss_pred ccCCCcccchhhhhccceeeee----------------------ecceeeeccccccCCCccCCC
Confidence 4446688999999999999874 3589999975 5899999643
No 47
>PF06816 NOD: NOTCH protein; InterPro: IPR010660 NOTCH signalling plays a fundamental role during a great number of developmental processes in multicellular animals []. NOD (NOTCH protein domain) represents a region present in many NOTCH proteins and NOTCH homologues in multiple species such as 0, NOTCH2 and NOTCH3, LIN12, SC1 and TAN1. Role of NOD domain remains to be elucidated.; GO: 0030154 cell differentiation, 0016021 integral to membrane; PDB: 2OO4_A 3ETO_A 3I08_A 3L95_X.
Probab=45.41 E-value=48 Score=23.05 Aligned_cols=32 Identities=16% Similarity=0.320 Sum_probs=23.4
Q ss_pred ceEEEEecCCChhhhhHHHHHHHHHHHHhhCCCC
Q psy2064 4 NSITVRLDDMTKEAFLSPLLNFFMDGLAAIIPCP 37 (221)
Q Consensus 4 nSvtiR~~~~t~EeFl~~~~~~f~~~La~~l~~~ 37 (221)
-+++|.+ -|.||+|....- .|.+.|+.+|.+.
T Consensus 7 G~lvivv-l~~P~~f~~~~~-~FLr~Ls~~Lrt~ 38 (57)
T PF06816_consen 7 GTLVIVV-LMDPEEFRNNSV-QFLRELSRVLRTT 38 (57)
T ss_dssp SEEEEEE-SS-HHHHHHTHH-HHHHHHHHHCTSE
T ss_pred eeEEEEE-EeCHHHHHHHHH-HHHHHHHHHHeee
Confidence 4556666 499999987655 7888899999763
No 48
>PRK02289 4-oxalocrotonate tautomerase; Provisional
Probab=43.03 E-value=88 Score=21.15 Aligned_cols=38 Identities=18% Similarity=0.239 Sum_probs=27.9
Q ss_pred EEEecCCChhhhhHHHHHHHHHHHHhhCCCCCCcEEEE
Q psy2064 7 TVRLDDMTKEAFLSPLLNFFMDGLAAIIPCPRENIYLF 44 (221)
Q Consensus 7 tiR~~~~t~EeFl~~~~~~f~~~La~~l~~~~~~V~If 44 (221)
.|.+..=..+|-....-+.+.+++++.++++++.|.|+
T Consensus 5 ~i~~~~Grs~EqK~~L~~~it~a~~~~~~~p~~~v~V~ 42 (60)
T PRK02289 5 RIDLFEGRSQEQKNALAREVTEVVSRIAKAPKEAIHVF 42 (60)
T ss_pred EEEECCCCCHHHHHHHHHHHHHHHHHHhCcCcceEEEE
Confidence 34443223556677788899999999999998887765
No 49
>COG1669 Predicted nucleotidyltransferases [General function prediction only]
Probab=41.79 E-value=1.6e+02 Score=22.71 Aligned_cols=50 Identities=8% Similarity=0.063 Sum_probs=31.4
Q ss_pred hhhhHHHHHHHHHHHHhhCCCCCCcEEEEEeee-cCCCCCCeeEEEEEEEcCC
Q psy2064 16 EAFLSPLLNFFMDGLAAIIPCPRENIYLFSIQD-DTDVTSRILNVSFSARASD 67 (221)
Q Consensus 16 EeFl~~~~~~f~~~La~~l~~~~~~V~IfSvq~-~~~~~~~~lDV~fav~~s~ 67 (221)
.+.+...++.-...|++..++ .++-||+=-- ....+..++||+.-...+.
T Consensus 4 ~~~~~~~lr~~~~~l~~k~gv--~~~~vFGS~aRgE~~~~SDIDILVef~~~~ 54 (97)
T COG1669 4 VSELKKILRKIKPELKEKYGV--KRVAVFGSYARGEQKPDSDIDILVEFEPGK 54 (97)
T ss_pred HHHHHHHHHHHHHHHHHHhCC--ceEEEeeeeecCCCCCCCCceeEEeecCCc
Confidence 334444466667777777776 6799996543 2233457899988665543
No 50
>COG2888 Predicted Zn-ribbon RNA-binding protein with a function in translation [Translation, ribosomal structure and biogenesis]
Probab=40.84 E-value=12 Score=26.54 Aligned_cols=13 Identities=15% Similarity=0.319 Sum_probs=9.6
Q ss_pred CCccee-eCCCCCCCC
Q psy2064 196 VSTFAC-VHPDKFYDG 210 (221)
Q Consensus 196 ~~~y~C-~CP~Gf~G~ 210 (221)
.+.|.| .| ||.||
T Consensus 48 g~~Y~Cp~C--GF~GP 61 (61)
T COG2888 48 GNPYRCPKC--GFEGP 61 (61)
T ss_pred CCceECCCc--CccCC
Confidence 347887 66 89887
No 51
>KOG1226|consensus
Probab=40.83 E-value=46 Score=34.43 Aligned_cols=16 Identities=13% Similarity=0.119 Sum_probs=13.1
Q ss_pred eeeCCCCCCCCCcccc
Q psy2064 200 ACVHPDKFYDGLDSIL 215 (221)
Q Consensus 200 ~C~CP~Gf~G~~~~~~ 215 (221)
+|+|-+|++|+.|.=+
T Consensus 567 ~CvC~~GwtG~~C~C~ 582 (783)
T KOG1226|consen 567 RCVCNPGWTGSACNCP 582 (783)
T ss_pred cEEcCCCCccCCCCCC
Confidence 6999999999988744
No 52
>PF01282 Ribosomal_S24e: Ribosomal protein S24e; InterPro: IPR001976 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This family contains the S24e ribosomal proteins from eukaryotes and archaebacteria. These proteins have 101 to 148 amino acids.; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 2V94_B 1YWX_A 2G1D_A 3IZ6_U 1XN9_A 2XZM_P 2XZN_P 3U5G_Y 3J16_D 3IZB_U ....
Probab=38.33 E-value=42 Score=24.96 Aligned_cols=29 Identities=24% Similarity=0.377 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHhhCCCCCCcEEEEEeeec
Q psy2064 21 PLLNFFMDGLAAIIPCPRENIYLFSIQDD 49 (221)
Q Consensus 21 ~~~~~f~~~La~~l~~~~~~V~IfSvq~~ 49 (221)
+.....+..||+.+++.++.|.|+++...
T Consensus 13 psr~ei~~klA~~~~~~~~~ivv~~~~t~ 41 (84)
T PF01282_consen 13 PSRKEIREKLAAMLNVDPDLIVVFGIKTE 41 (84)
T ss_dssp --HHHHHHHHHHHHTSTGCCEEEEEEEES
T ss_pred CCHHHHHHHHHHHhCCCCCeEEEeccEec
Confidence 34567889999999999999999999953
No 53
>KOG1214|consensus
Probab=37.11 E-value=48 Score=35.03 Aligned_cols=16 Identities=25% Similarity=0.308 Sum_probs=13.6
Q ss_pred CCcceeeCCCCCCCCC
Q psy2064 196 VSTFACVHPDKFYDGL 211 (221)
Q Consensus 196 ~~~y~C~CP~Gf~G~~ 211 (221)
.+.|.|+|.+||.|+-
T Consensus 806 gs~y~C~CLPGfsGDG 821 (1289)
T KOG1214|consen 806 GSTYSCACLPGFSGDG 821 (1289)
T ss_pred CceEEEeecCCccCCc
Confidence 4589999999999863
No 54
>cd05403 NT_KNTase_like Nucleotidyltransferase (NT) domain of Staphylococcus aureus kanamycin nucleotidyltransferase, and similar proteins. S. aureus KNTase is a plasmid encoded enzyme which confers resistance to a wide range of aminoglycoside antibiotics which have a 4'- or 4''-hydroxyl group in the equatorial position, such as kanamycin A. This enzyme transfers a nucleoside monophosphate group from a nucleotide (ATP,GTP, or UTP) to the 4'-hydroxyl group of kanamycin A. This enzyme is a homodimer, having two NT active sites. The nucleotide and antibiotic binding sites of each active site include residues from each monomer. Included in this subgroup is Escherichia coli AadA5 which confers resistance to the antibiotic spectinomycin and is a putative aminoglycoside-3'-adenylyltransferase. It is part of the aadA5 cassette of a class 1 integron. This subgroup also includes Haemophilus influenzae HI0073 which forms a 2:2 heterotetramer with an unrelated protein HI0074. Structurally HI0074 is
Probab=33.84 E-value=1.6e+02 Score=20.39 Aligned_cols=44 Identities=14% Similarity=0.178 Sum_probs=30.0
Q ss_pred HHHHHHHHHhhCCCCCCcEEEEE-eeecCCCCCCeeEEEEEEEcCC
Q psy2064 23 LNFFMDGLAAIIPCPRENIYLFS-IQDDTDVTSRILNVSFSARASD 67 (221)
Q Consensus 23 ~~~f~~~La~~l~~~~~~V~IfS-vq~~~~~~~~~lDV~fav~~s~ 67 (221)
...+++.|++..+ ....|.+|+ ..........++|+..-.....
T Consensus 4 ~~~i~~~l~~~~~-~i~~i~LfGS~arg~~~~~SDiDl~vi~~~~~ 48 (93)
T cd05403 4 LEEILEILRELLG-GVEKVYLFGSYARGDARPDSDIDLLVIFDDPL 48 (93)
T ss_pred HHHHHHHHHHHhC-CccEEEEEeeeecCCCCCCCCeeEEEEeCCCC
Confidence 4566777777776 567899994 4433333467899988776665
No 55
>KOG3424|consensus
Probab=31.58 E-value=81 Score=25.51 Aligned_cols=46 Identities=15% Similarity=0.336 Sum_probs=37.6
Q ss_pred ceEEEEecCCChhhhhHH---------------HHHHHHHHHHhhCCCCCCcEEEEEeeec
Q psy2064 4 NSITVRLDDMTKEAFLSP---------------LLNFFMDGLAAIIPCPRENIYLFSIQDD 49 (221)
Q Consensus 4 nSvtiR~~~~t~EeFl~~---------------~~~~f~~~La~~l~~~~~~V~IfSvq~~ 49 (221)
.++|||.+..-....|+. .....++.||++..+.+|+|.+|.+..+
T Consensus 3 ~~vtirtrk~~tNrLL~RKqmvvdvlHPG~a~vsK~EirEKla~mYkt~~d~V~vfgfrt~ 63 (132)
T KOG3424|consen 3 DAVTIRTRKFMTNRLLSRKQMVVDVLHPGKANVSKTEIREKLAKMYKTTPDAVFVFGFRTH 63 (132)
T ss_pred ccEEEehhhhhhhhhhhhhheeEEEecCCCCCCCHHHHHHHHHHHhcCCcceEEEEEeeec
Confidence 578888877666666664 2677999999999999999999999853
No 56
>PF01414 DSL: Delta serrate ligand; InterPro: IPR001774 Ligands of the Delta/Serrate/lag-2 (DSL) family and their receptors, members of the lin-12/Notch family, mediate cell-cell interactions that specify cell fate in invertebrates and vertebrates. In Caenorhabditis elegans, two DSL genes, lag-2 and apx-1, influence different cell fate decisions during development []. Molecular interaction between Notch and Serrate, another EGF-homologous transmembrane protein containing a region of striking similarity to Delta, has been shown and the same two EGF repeats of Notch may also constitute a Serrate binding domain [, ].; GO: 0007154 cell communication, 0016020 membrane; PDB: 2VJ2_A.
Probab=31.16 E-value=17 Score=25.69 Aligned_cols=13 Identities=8% Similarity=-0.281 Sum_probs=9.7
Q ss_pred eeeCCCCCCCCCc
Q psy2064 200 ACVHPDKFYDGLD 212 (221)
Q Consensus 200 ~C~CP~Gf~G~~~ 212 (221)
.=.|++|++||.|
T Consensus 51 ~~~C~~Gw~G~~C 63 (63)
T PF01414_consen 51 NKVCLPGWTGPNC 63 (63)
T ss_dssp -EEE-TTEESTTS
T ss_pred CCCCCCCCcCCCC
Confidence 3579999999987
No 57
>KOG0994|consensus
Probab=29.64 E-value=41 Score=36.68 Aligned_cols=19 Identities=11% Similarity=0.211 Sum_probs=16.1
Q ss_pred CcceeeCCCCCCCCCcccc
Q psy2064 197 STFACVHPDKFYDGLDSIL 215 (221)
Q Consensus 197 ~~y~C~CP~Gf~G~~~~~~ 215 (221)
....|.|-+||.|.||.+-
T Consensus 932 ~~ivC~C~~GY~G~RCe~C 950 (1758)
T KOG0994|consen 932 QQIVCHCQEGYSGSRCEIC 950 (1758)
T ss_pred cceeeecccCccccchhhh
Confidence 3568999999999999863
No 58
>PF04863 EGF_alliinase: Alliinase EGF-like domain; InterPro: IPR006947 Allicin is a thiosulphinate that gives rise to dithiines, allyl sulphides and ajoenes, the three groups of active compounds in Allium species. Allicin is synthesised from sulphoxide cysteine derivatives by alliinase, whose C-S lyase activity cleaves C(beta)-S(gamma) bonds. It is thought that this enzyme forms part of a primitive plant defence system [].; GO: 0016846 carbon-sulfur lyase activity; PDB: 1LK9_B 2HOX_C 2HOR_A.
Probab=29.18 E-value=17 Score=25.39 Aligned_cols=19 Identities=16% Similarity=0.025 Sum_probs=12.4
Q ss_pred CcceeeCCCCCCCCCcccc
Q psy2064 197 STFACVHPDKFYDGLDSIL 215 (221)
Q Consensus 197 ~~y~C~CP~Gf~G~~~~~~ 215 (221)
....|+|-.-|+||.|+..
T Consensus 34 G~p~CECn~Cy~GpdCS~~ 52 (56)
T PF04863_consen 34 GSPVCECNSCYGGPDCSTL 52 (56)
T ss_dssp TEE--EE-TTEESTTS-EE
T ss_pred CCccccccCCcCCCCcccC
Confidence 3468999999999999954
No 59
>PF15500 Toxin_39: Putative RNase-like toxin
Probab=28.01 E-value=47 Score=25.43 Aligned_cols=22 Identities=32% Similarity=0.541 Sum_probs=17.5
Q ss_pred cceeecCCCCCCCCCCCCCCCc
Q psy2064 147 KEVEVLPFDDNLCVQEPCLNYE 168 (221)
Q Consensus 147 ~~~~v~p~~~~~C~~~PC~ngg 168 (221)
+.+.+-|-+...|+.-||++-.
T Consensus 16 HdvvvTp~Gvg~CSppPCPvi~ 37 (96)
T PF15500_consen 16 HDVVVTPDGVGLCSPPPCPVIR 37 (96)
T ss_pred cceeECcccccccCCCCCCchh
Confidence 4556777788999999999853
No 60
>PRK01271 4-oxalocrotonate tautomerase; Provisional
Probab=27.88 E-value=2e+02 Score=21.00 Aligned_cols=41 Identities=15% Similarity=0.085 Sum_probs=28.0
Q ss_pred EEEEecCC-ChhhhhHHHHHHHHHHHHhhCCCCCCcEEEEEee
Q psy2064 6 ITVRLDDM-TKEAFLSPLLNFFMDGLAAIIPCPRENIYLFSIQ 47 (221)
Q Consensus 6 vtiR~~~~-t~EeFl~~~~~~f~~~La~~l~~~~~~V~IfSvq 47 (221)
|+|++..- ..+|=-...-+.+-++++++||.+++.|.|+ |+
T Consensus 4 I~I~~~~g~~s~EqK~~La~~iT~a~~~~lg~~~e~v~V~-I~ 45 (76)
T PRK01271 4 IDIKCFPRELDEEQKAALAADITDVIIRHLNSKDSSISIA-LQ 45 (76)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHHHHHhCcCcceEEEE-EE
Confidence 45666542 3344455567889999999999997776664 44
No 61
>PF11403 Yeast_MT: Yeast metallothionein; InterPro: IPR022710 Metallothioneins are characterised by an abundance of cysteine residues and a lack of generic secondary structure motifs. This protein functions in primary metal storage, transport and detoxification []. For the first 40 residues in the protein the polypeptide wraps around the metal by forming two large parallel loops separated by a deep cleft containing the metal cluster []. ; PDB: 1AQS_A 1AQR_A 1RJU_V 1FMY_A 1AOO_A 1AQQ_A.
Probab=27.07 E-value=28 Score=22.12 Aligned_cols=14 Identities=43% Similarity=0.802 Sum_probs=8.0
Q ss_pred CCCCCCCCCCcEEc
Q psy2064 158 LCVQEPCLNYEQCV 171 (221)
Q Consensus 158 ~C~~~PC~ngg~Cv 171 (221)
.|.-..|.|..+|-
T Consensus 8 qcqcgscknneqcq 21 (40)
T PF11403_consen 8 QCQCGSCKNNEQCQ 21 (40)
T ss_dssp --SSSTTTT-TTST
T ss_pred eeecCCccChHHHh
Confidence 45566788888874
No 62
>PF06247 Plasmod_Pvs28: Plasmodium ookinete surface protein Pvs28; InterPro: IPR010423 This family consists of several ookinete surface protein (Pvs28) from several species of Plasmodium. Pvs25 and Pvs28 are expressed on the surface of ookinetes. These proteins are potential candidates for vaccine and induce antibodies that block the infectivity of Plasmodium vivax in immunised animals [].; GO: 0009986 cell surface, 0016020 membrane; PDB: 1Z3G_B 1Z1Y_B 1Z27_A.
Probab=25.14 E-value=31 Score=29.89 Aligned_cols=35 Identities=17% Similarity=0.486 Sum_probs=24.1
Q ss_pred CCCCCCCcEEccceeccCCCccccccceeeeccCCCCcceeeCCCCCCCCCc
Q psy2064 161 QEPCLNYEQCVTVLKFGNASGFVASDSVLFRPIYPVSTFACVHPDKFYDGLD 212 (221)
Q Consensus 161 ~~PC~ngg~Cv~~~~~~~~~~~~~s~~~~f~~~~~~~~y~C~CP~Gf~G~~~ 212 (221)
..||-++++|+...... ....|.|.|-+||+=...
T Consensus 49 ~K~Cgdya~C~~~~~~~-----------------~~~~~~C~C~~gY~~~~~ 83 (197)
T PF06247_consen 49 NKPCGDYAKCINQANKG-----------------EERAYKCDCINGYILKQG 83 (197)
T ss_dssp TSEEETTEEEEE-SSTT-----------------SSTSEEEEE-TTEEESSS
T ss_pred CccccchhhhhcCCCcc-----------------cceeEEEecccCceeeCC
Confidence 68999999999863211 245899999999965443
No 63
>cd01328 FSL_SPARC Follistatin-like SPARC (secreted protein, acidic, and rich in cysteines) domain; SPARC/BM-40/osteonectin is a multifunctional glycoprotein which modulates cellular interaction with the extracellular matrix by its binding to structural matrix proteins such as collagen and vitronectin. The protein it composed of an N-terminal acidic region, a follistatin (FS) domain and an EF-hand calcium binding domain. The FS domain consists of an N-terminal beta hairpin (FOLN/EGF-like domain) and a small hydrophobic core of alpha/beta structure (Kazal domain) and has five disulfide bonds and a conserved N-glycosylation site. The FSL_SPARC domain is a member of the superfamily of kazal-like proteinase inhibitors and follistatin-like proteins.
Probab=24.54 E-value=80 Score=23.76 Aligned_cols=16 Identities=19% Similarity=0.345 Sum_probs=13.7
Q ss_pred CCCCCCCCCCcEEccc
Q psy2064 158 LCVQEPCLNYEQCVTV 173 (221)
Q Consensus 158 ~C~~~PC~ngg~Cv~~ 173 (221)
+|.+-.|..|.+|+-+
T Consensus 1 pC~~v~C~~G~~C~~d 16 (86)
T cd01328 1 PCENHHCGAGKVCEVD 16 (86)
T ss_pred CCCCcCCCCCCEeeEC
Confidence 5888899999999864
No 64
>PF02594 DUF167: Uncharacterised ACR, YggU family COG1872; InterPro: IPR003746 This entry describes proteins of unknown function. Structures for two of these proteins, YggU from Escherichia coli and MTH637 from the archaea Methanobacterium thermoautotrophicum, have been determined; they have a core 2-layer alpha/beta structure consisting of beta(2)-loop-alpha-beta(2)-alpha [, ].; PDB: 1YH5_A 1N91_A 1JRM_A.
Probab=24.38 E-value=65 Score=23.56 Aligned_cols=24 Identities=21% Similarity=0.275 Sum_probs=18.1
Q ss_pred HHHHHHHHhhCCCCCCcEEEEEee
Q psy2064 24 NFFMDGLAAIIPCPRENIYLFSIQ 47 (221)
Q Consensus 24 ~~f~~~La~~l~~~~~~V~IfSvq 47 (221)
+.+.+.||+.|++++.+|.|.+=+
T Consensus 43 ~ali~~La~~l~v~ks~i~i~~G~ 66 (77)
T PF02594_consen 43 KALIRFLAKALGVPKSDIEIVSGH 66 (77)
T ss_dssp HHHHHHHHHHCT--TTCEEECC-C
T ss_pred HHHHHHHHHHhCCCcccEEEEecC
Confidence 458899999999999999987654
No 65
>KOG4260|consensus
Probab=24.07 E-value=40 Score=31.09 Aligned_cols=34 Identities=29% Similarity=0.676 Sum_probs=27.0
Q ss_pred CCCCC--CCCCCCCCcEEccceeccCCCccccccceeeeccCCCCcceeeCCCCCCCC
Q psy2064 155 DDNLC--VQEPCLNYEQCVTVLKFGNASGFVASDSVLFRPIYPVSTFACVHPDKFYDG 210 (221)
Q Consensus 155 ~~~~C--~~~PC~ngg~Cv~~~~~~~~~~~~~s~~~~f~~~~~~~~y~C~CP~Gf~G~ 210 (221)
+.|.| .+.||-...-|+.+ ...|.|.+.+||.+.
T Consensus 235 DvnEC~~ep~~c~~~qfCvNt----------------------eGSf~C~dk~Gy~~g 270 (350)
T KOG4260|consen 235 DVNECQNEPAPCKAHQFCVNT----------------------EGSFKCEDKEGYKKG 270 (350)
T ss_pred cHHHHhcCCCCCChhheeecC----------------------CCceEecccccccCC
Confidence 45667 37789999999986 568999998888773
No 66
>KOG4004|consensus
Probab=22.34 E-value=1.2e+02 Score=26.88 Aligned_cols=20 Identities=25% Similarity=0.529 Sum_probs=17.7
Q ss_pred CCCCCCCCCCCCCcEEccce
Q psy2064 155 DDNLCVQEPCLNYEQCVTVL 174 (221)
Q Consensus 155 ~~~~C~~~PC~ngg~Cv~~~ 174 (221)
+.++|...-|-.|..|+-+.
T Consensus 49 a~npC~dh~Cg~gk~C~vd~ 68 (259)
T KOG4004|consen 49 ARNPCADHKCGPGKNCLVDL 68 (259)
T ss_pred ccCccccccCCCCceeeecC
Confidence 57899999999999998764
No 67
>PRK01310 hypothetical protein; Validated
Probab=20.97 E-value=1e+02 Score=23.94 Aligned_cols=25 Identities=20% Similarity=0.273 Sum_probs=21.9
Q ss_pred HHHHHHHHHhhCCCCCCcEEEEEee
Q psy2064 23 LNFFMDGLAAIIPCPRENIYLFSIQ 47 (221)
Q Consensus 23 ~~~f~~~La~~l~~~~~~V~IfSvq 47 (221)
=+.+.+.||..|++++.+|.|.+=+
T Consensus 54 N~ali~~LA~~l~v~ks~I~iv~G~ 78 (104)
T PRK01310 54 NRALIELLAKALGVPKSSVRLLSGA 78 (104)
T ss_pred HHHHHHHHHHHhCCChhhEEEEecC
Confidence 3568899999999999999998876
No 68
>PF01361 Tautomerase: Tautomerase enzyme; InterPro: IPR004370 4-Oxalocrotonate tautomerase (4-OT) catalyzes the isomerisation of beta,gamma-unsaturated enones to their alpha,beta-isomers. The enzyme is part of a plasmid-encoded pathway, which enables bacteria harbouring the plasmid to use various aromatic hydrocarbons as their sole sources of carbon and energy. The enzyme is a barrel-shaped hexamer, which can be viewed as a trimer of dimers. The hexamer contains a hydrophobic core formed by three beta-sheets and surrounded by three pairs of alpha-helices. Each 4-OT monomer of 62 amino acids has a relatively simple beta-alpha-beta fold as described by the structure of the enzyme from Pseudomonas putida []. The monomer begins with a conserved proline at the start of a beta-strand, followed by an alpha-helix and a 310 helix preceding a second parallel beta-strand, and ends with a beta-hairpin near the C terminus. The dimer results from antiparallel interactions between the beta-sheets and alpha-helices of the two monomers, forming a four-stranded beta-sheet with antiparallel alpha-helices on one side, creating two active sites, one at each end of the beta-sheet. Three dimers further associate to form a hexamer by the interactions of the strands of the C-terminal beta-hairpin loops with the edges of the four-stranded beta-sheets of neighbouring dimers, creating a series of cross-links that stabilise the hexamer Pro-1 of the mature protein functions as the general base while Arg-39 and an ordered water molecule each provide a hydrogen bond to the C-2 oxygen of substrate. Arg-39 plays an additional role in the binding of the C-1 carboxylate group. Arg-11 participates both in substrate binding and in catalysis. It interacts with the C-6 carboxylate group, thereby holding the substrate in place and drawing electron density to the C-5 position. The hydrophobic nature of the active site, which lowers the pKa of Pro-1 and provides a favourable environment for catalysis, is largely maintained by Phe-50. Because several Arg residues located near the active site are not conserved among all members of this family and because of the presence of fairly distantly related paralogs in Campylobacter jejuni, the family is regarded as not necessarily uniform in function.; GO: 0016853 isomerase activity, 0006725 cellular aromatic compound metabolic process; PDB: 4OTA_H 4OTC_G 4OTB_J 2FM7_A 1BJP_B 1S0Y_K 3EJ9_E 3EJ7_K 3EJ3_I 3MB2_A ....
Probab=20.82 E-value=2.4e+02 Score=18.59 Aligned_cols=32 Identities=22% Similarity=0.291 Sum_probs=21.7
Q ss_pred CCChhhhhHHHHHHHHHHHHhhCCCCCCcEEEE
Q psy2064 12 DMTKEAFLSPLLNFFMDGLAAIIPCPRENIYLF 44 (221)
Q Consensus 12 ~~t~EeFl~~~~~~f~~~La~~l~~~~~~V~If 44 (221)
+.|+|+ .....+.+.+++.+.++.+++.|.|+
T Consensus 10 g~~~e~-K~~l~~~it~~~~~~lg~~~~~i~V~ 41 (60)
T PF01361_consen 10 GRTAEQ-KRELAEAITDAVVEVLGIPPERISVV 41 (60)
T ss_dssp TS-HHH-HHHHHHHHHHHHHHHHTS-GGGEEEE
T ss_pred CCCHHH-HHHHHHHHHHHHHHHhCcCCCeEEEE
Confidence 334444 55567888889999999988876665
No 69
>KOG3607|consensus
Probab=20.63 E-value=92 Score=32.06 Aligned_cols=19 Identities=11% Similarity=0.169 Sum_probs=16.4
Q ss_pred CcceeeCCCCCCCCCcccc
Q psy2064 197 STFACVHPDKFYDGLDSIL 215 (221)
Q Consensus 197 ~~y~C~CP~Gf~G~~~~~~ 215 (221)
+.+.|+|-+|+.+|.|.+.
T Consensus 640 n~~~ChC~~gwapp~C~~~ 658 (716)
T KOG3607|consen 640 NELNCHCEPGWAPPFCFIF 658 (716)
T ss_pred CCcceeeCCCCCCCccccc
Confidence 3578999999999999865
No 70
>TIGR01763 MalateDH_bact malate dehydrogenase, NAD-dependent. The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable.
Probab=20.28 E-value=2.1e+02 Score=25.90 Aligned_cols=38 Identities=13% Similarity=0.194 Sum_probs=30.5
Q ss_pred cCCChhhhhHH--HHH--HHHHHHHhhCCCCCCcEEEEEeee
Q psy2064 11 DDMTKEAFLSP--LLN--FFMDGLAAIIPCPRENIYLFSIQD 48 (221)
Q Consensus 11 ~~~t~EeFl~~--~~~--~f~~~La~~l~~~~~~V~IfSvq~ 48 (221)
.+..++.+++- .++ +|+..|++.|++++++|+.+=+-.
T Consensus 132 sg~~~~rviG~g~~lds~R~~~~la~~l~v~~~~v~~~v~Ge 173 (305)
T TIGR01763 132 SGFPKERVIGQAGVLDSARFRTFIAMELGVSVQDVTACVLGG 173 (305)
T ss_pred HCcCHHHEEEeccchHHHHHHHHHHHHhCcCHHHeeeeEEec
Confidence 34566677664 577 899999999999999999996663
Done!