RPS-BLAST 2.2.26 [Sep-21-2011]

Database: CDD.v3.10 
           44,354 sequences; 10,937,602 total letters

Searching..................................................done

Query= psy2064
         (221 letters)



>gnl|CDD|237075 PRK12360, PRK12360, 4-hydroxy-3-methylbut-2-enyl diphosphate
           reductase; Provisional.
          Length = 281

 Score = 30.5 bits (69), Expect = 0.64
 Identities = 14/44 (31%), Positives = 21/44 (47%), Gaps = 4/44 (9%)

Query: 136 CANTSSYVLDSKEVEVLPFDDNLCV----QEPCLNYEQCVTVLK 175
           C N++  V   +EVE +PF D  CV          +E  + V+K
Sbjct: 137 CDNSAYIVNSIEEVENIPFLDKACVVAQTTIIPELWEDILNVIK 180


>gnl|CDD|178025 PLN02403, PLN02403, aminocyclopropanecarboxylate oxidase.
          Length = 303

 Score = 28.7 bits (64), Expect = 2.5
 Identities = 18/62 (29%), Positives = 24/62 (38%), Gaps = 9/62 (14%)

Query: 21  PLLNFFMDGLAAIIPCPRENIYLFSIQDDTDVTS---------RILNVSFSARASDGTFY 71
           P L F  DG    IP  + N    +  D  +V S         R++     +R S  TFY
Sbjct: 191 PGLEFLKDGKWVPIPPSKNNTIFVNTGDQLEVLSNGRYKSTLHRVMADKNGSRLSIATFY 250

Query: 72  PP 73
            P
Sbjct: 251 NP 252


>gnl|CDD|214352 CHL00068, rpl20, ribosomal protein L20.
          Length = 115

 Score = 27.1 bits (61), Expect = 3.7
 Identities = 11/21 (52%), Positives = 13/21 (61%), Gaps = 2/21 (9%)

Query: 173 VLKFGNASGFVASDSVLFRPI 193
           +LKF  ASGF  + S LFR  
Sbjct: 17  ILKF--ASGFRGAHSRLFRTA 35


>gnl|CDD|191093 pfam04788, DUF620, Protein of unknown function (DUF620).  Family of
           uncharacterized proteins.
          Length = 243

 Score = 28.0 bits (62), Expect = 3.9
 Identities = 20/63 (31%), Positives = 26/63 (41%), Gaps = 9/63 (14%)

Query: 120 CDTELVVRHGSTLGTFCAN-------TSSYVLDSKEVEVLPFDDNLCVQEPCLNYEQCVT 172
            D ++V RH   LG   A         +   LD K    L F +  CV E  ++ E C  
Sbjct: 60  SDGKVVWRHTPWLGAHAAKGPVRPLRRALQGLDPKTTASL-FANAQCVGEKRVDGEDCF- 117

Query: 173 VLK 175
           VLK
Sbjct: 118 VLK 120


>gnl|CDD|182353 PRK10280, PRK10280, dipeptidyl carboxypeptidase II; Provisional.
          Length = 681

 Score = 27.9 bits (62), Expect = 4.6
 Identities = 31/120 (25%), Positives = 51/120 (42%), Gaps = 27/120 (22%)

Query: 30  LAAIIPCPR----ENIYLFSIQDDTDVTSRILNVSF---SARASDGTFYPPQFLQERVYL 82
           +AAI   P+     N  L +++   ++ +R+ +V F   +A  +D        LQ    L
Sbjct: 43  IAAIALNPQAPDFNNTIL-ALEQSGELLTRVTSVFFAMTAAHTND-------ELQR---L 91

Query: 83  NRGILARLATVQERVYLNRGILARLATV--QSATLSIDECDTELV-------VRHGSTLG 133
           +    A LA +   +YLN  + AR+  V  Q  +L +D     LV       V  G+ L 
Sbjct: 92  DEQFSAELAELANDIYLNGELFARVDAVWQQRESLGLDSESIRLVEVIHQRFVLAGAKLA 151


>gnl|CDD|227315 COG4982, COG4982, 3-oxoacyl-[acyl-carrier protein].
          Length = 866

 Score = 27.5 bits (61), Expect = 6.3
 Identities = 18/71 (25%), Positives = 23/71 (32%), Gaps = 4/71 (5%)

Query: 88  ARLATVQERVYLN--RGILARLATVQSATLSIDECDTELVVRHGSTLGTFCANTSSYVLD 145
               T Q  V     R  L +L     A       DT L+    + LG       + V  
Sbjct: 251 TDQVTGQLGVLARAARLDLGQLGLDDPAEKLPAATDTALLDLVNAELGEDWPRLVAPVFS 310

Query: 146 SKEVEVLPFDD 156
            K+  V  FDD
Sbjct: 311 PKKAVV--FDD 319


>gnl|CDD|226426 COG3911, COG3911, Predicted ATPase [General function prediction
           only].
          Length = 183

 Score = 26.8 bits (59), Expect = 8.2
 Identities = 25/93 (26%), Positives = 35/93 (37%), Gaps = 5/93 (5%)

Query: 73  PQFLQERVYLNRGILARLATVQERVYLNRGI---LARLATVQSATLSIDECDTELVVRHG 129
           P    E V L R    R A V  RV+ +RG    LA L  +  A L+ DE  T +V    
Sbjct: 61  PGAFAELVGLQRLRQTRSAAVGGRVFFDRGPPDALAYLRFLSGALLA-DEVAT-IVREGR 118

Query: 130 STLGTFCANTSSYVLDSKEVEVLPFDDNLCVQE 162
                F      ++    E   +  D+ +   E
Sbjct: 119 YNPRVFLVQPWPFIYQQDEERKITLDEAVAFYE 151


>gnl|CDD|234623 PRK00087, PRK00087, 4-hydroxy-3-methylbut-2-enyl diphosphate
           reductase/S1 RNA-binding domain protein; Reviewed.
          Length = 647

 Score = 27.2 bits (61), Expect = 8.6
 Identities = 18/45 (40%), Positives = 26/45 (57%), Gaps = 4/45 (8%)

Query: 135 FCANTSSYVLDSKEVEVLPFDDNLCV--Q--EPCLNYEQCVTVLK 175
           +C N++  V D +E E LPFD  +CV  Q  E   N+E+ +  LK
Sbjct: 133 WCNNSAIIVEDGEEAEKLPFDKKICVVSQTTEKQENFEKVLKELK 177


  Database: CDD.v3.10
    Posted date:  Mar 20, 2013  7:55 AM
  Number of letters in database: 10,937,602
  Number of sequences in database:  44,354
  
Lambda     K      H
   0.324    0.138    0.405 

Gapped
Lambda     K      H
   0.267   0.0730    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 11,006,561
Number of extensions: 1015037
Number of successful extensions: 887
Number of sequences better than 10.0: 1
Number of HSP's gapped: 887
Number of HSP's successfully gapped: 11
Length of query: 221
Length of database: 10,937,602
Length adjustment: 93
Effective length of query: 128
Effective length of database: 6,812,680
Effective search space: 872023040
Effective search space used: 872023040
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 57 (25.7 bits)