RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= psy2064
         (221 letters)



>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
            acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
            synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
          Length = 2006

 Score = 32.3 bits (73), Expect = 0.13
 Identities = 22/130 (16%), Positives = 38/130 (29%), Gaps = 44/130 (33%)

Query: 38   RENIY---LFSIQDDTDVTSRILNVSFSARASDGTFYPP-------QFLQERVYLNRGIL 87
            REN Y   +F    D  + +  +    +  ++  TF          QF Q        + 
Sbjct: 1685 REN-YSAMIFETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSATQFTQ------PALT 1737

Query: 88   A-RLATVQERVYLNRGILARLATVQSATLSIDECDTELVVRHGSTLGTFCANTSSYVLDS 146
                A        ++G++   AT   A  S               LG + A  S      
Sbjct: 1738 LMEKAAF--EDLKSKGLIPADATF--AGHS---------------LGEYAALASL----- 1773

Query: 147  KEVEVLPFDD 156
               +V+  + 
Sbjct: 1774 --ADVMSIES 1781



 Score = 27.3 bits (60), Expect = 4.9
 Identities = 23/149 (15%), Positives = 47/149 (31%), Gaps = 47/149 (31%)

Query: 2   LFN---SITVRLDDM-----TKEAFLSPLLNFFMDGLAAIIPCPRENIYLFS-------- 45
           +F    +     +++     T    +  L+ F  + L+ +I    +   +F+        
Sbjct: 159 IFGGQGNTDDYFEELRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEW 218

Query: 46  IQD-----DTDVTSRILNVSFSARASDGTFYPP-----QFLQERVYLNRGILARLA--TV 93
           +++     D D    I  +S            P     Q      Y+   + A+L   T 
Sbjct: 219 LENPSNTPDKDYLLSIP-ISC-----------PLIGVIQLAH---YV---VTAKLLGFTP 260

Query: 94  QERVYLNRGILARLATVQSATLSIDECDT 122
            E     +G       + +A   I E D+
Sbjct: 261 GELRSYLKGATGHSQGLVTAVA-IAETDS 288



 Score = 27.3 bits (60), Expect = 5.0
 Identities = 17/71 (23%), Positives = 25/71 (35%), Gaps = 18/71 (25%)

Query: 124 LVVRHGSTLGTFCANTSSYVLDSKEVEVL--PFDDNLCVQEPCLNYEQ-----CVTVL-- 174
           L + HGS        T+S+ +       L   F+  L   EP   +           L  
Sbjct: 9   LTLSHGSLEHVLLVPTASFFI----ASQLQEQFNKIL--PEPTEGFAADDEPTTPAELVG 62

Query: 175 KFGNASGFVAS 185
           KF    G+V+S
Sbjct: 63  KF---LGYVSS 70


>2r76_A RARE lipoprotein B; alpha-beta protein, structural genomics, PSI-2,
           protein STRU initiative, northeast structural genomics
           consortium; 2.60A {Shewanella oneidensis}
          Length = 152

 Score = 29.1 bits (65), Expect = 0.65
 Identities = 15/66 (22%), Positives = 23/66 (34%), Gaps = 9/66 (13%)

Query: 56  ILNVSFSARASDGTFYPPQFLQERVYLNRGILARLATVQERVYLNRG--------ILARL 107
           I  V F+         P +    R YL+    A LA  +E   L +         IL  +
Sbjct: 80  IYFVEFAVALPGKEAQPFKIEIRRDYLDDPRTA-LAKSREMELLVKEMRIQAADRILQSM 138

Query: 108 ATVQSA 113
           A+ +  
Sbjct: 139 ASTEVN 144


>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
           programmed cell death; HET: DTP; 6.90A {Drosophila
           melanogaster} PDB: 3iz8_A*
          Length = 1221

 Score = 27.9 bits (61), Expect = 3.5
 Identities = 5/44 (11%), Positives = 18/44 (40%)

Query: 8   VRLDDMTKEAFLSPLLNFFMDGLAAIIPCPRENIYLFSIQDDTD 51
           +  +D   E  ++ +L+F       +I     ++   ++  + +
Sbjct: 534 ICDNDPKYERLVNAILDFLPKIEENLICSKYTDLLRIALMAEDE 577


>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL
           protein transport, transport, cytoplasm, GTPase
           activation; HET: GTP; 2.00A {Saccharomyces cerevisiae}
           PDB: 2l1l_B
          Length = 1049

 Score = 27.6 bits (60), Expect = 4.7
 Identities = 12/77 (15%), Positives = 23/77 (29%)

Query: 1   MLFNSITVRLDDMTKEAFLSPLLNFFMDGLAAIIPCPRENIYLFSIQDDTDVTSRILNVS 60
                I+       +   LS L+         I+     N  L    +   + + I+  +
Sbjct: 612 ACGIIISEERSVAERNRLLSDLMQLPNMAWDTIVEQSTANPTLLLDSETVKIIANIIKTN 671

Query: 61  FSARASDGTFYPPQFLQ 77
            +   S G  + PQ   
Sbjct: 672 VAVCTSMGADFYPQLGH 688


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.324    0.138    0.405 

Gapped
Lambda     K      H
   0.267   0.0455    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,245,855
Number of extensions: 183664
Number of successful extensions: 392
Number of sequences better than 10.0: 1
Number of HSP's gapped: 391
Number of HSP's successfully gapped: 6
Length of query: 221
Length of database: 6,701,793
Length adjustment: 90
Effective length of query: 131
Effective length of database: 4,188,903
Effective search space: 548746293
Effective search space used: 548746293
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 55 (25.6 bits)