Query psy2067
Match_columns 225
No_of_seqs 141 out of 1265
Neff 5.3
Searched_HMMs 46136
Date Fri Aug 16 23:28:56 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy2067.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/2067hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK14153 heat shock protein Gr 100.0 4.6E-38 9.9E-43 269.7 14.2 134 74-219 33-173 (194)
2 PRK14148 heat shock protein Gr 100.0 1.4E-37 3.1E-42 266.9 16.6 136 72-219 38-180 (195)
3 PRK14161 heat shock protein Gr 100.0 1.2E-37 2.5E-42 264.2 15.3 143 68-219 13-162 (178)
4 PRK14162 heat shock protein Gr 100.0 2.7E-37 5.8E-42 265.0 17.7 139 69-219 34-180 (194)
5 PRK14151 heat shock protein Gr 100.0 2.9E-37 6.3E-42 261.3 16.2 134 75-219 21-161 (176)
6 PRK14158 heat shock protein Gr 100.0 5.4E-37 1.2E-41 263.1 18.0 137 71-219 37-180 (194)
7 PRK14146 heat shock protein Gr 100.0 4.2E-37 9E-42 267.5 16.1 132 76-219 56-194 (215)
8 PRK14147 heat shock protein Gr 100.0 5.3E-37 1.1E-41 258.9 15.7 131 75-219 19-156 (172)
9 PRK14155 heat shock protein Gr 100.0 7.2E-37 1.6E-41 264.8 16.1 137 75-219 14-157 (208)
10 PRK14140 heat shock protein Gr 100.0 1.2E-36 2.6E-41 260.5 17.0 137 71-219 34-177 (191)
11 PRK14141 heat shock protein Gr 100.0 6.9E-37 1.5E-41 265.0 15.7 137 77-219 34-177 (209)
12 PRK14139 heat shock protein Gr 100.0 1.2E-36 2.6E-41 259.3 16.2 133 73-219 31-169 (185)
13 PRK14143 heat shock protein Gr 100.0 2.3E-36 4.9E-41 266.3 18.2 137 72-219 65-208 (238)
14 PRK14154 heat shock protein Gr 100.0 1.2E-36 2.5E-41 263.3 16.0 136 74-219 52-194 (208)
15 PRK14145 heat shock protein Gr 100.0 2.5E-36 5.3E-41 259.3 17.0 133 72-219 43-182 (196)
16 PRK14144 heat shock protein Gr 100.0 3.8E-36 8.2E-41 258.6 17.4 133 74-219 45-184 (199)
17 PRK14160 heat shock protein Gr 100.0 2.1E-36 4.6E-41 262.2 15.7 134 70-219 57-197 (211)
18 PRK14159 heat shock protein Gr 100.0 2.3E-36 4.9E-41 255.9 15.4 127 80-219 29-162 (176)
19 PRK14150 heat shock protein Gr 100.0 3.2E-36 6.9E-41 258.2 16.2 134 72-219 39-179 (193)
20 PRK14163 heat shock protein Gr 100.0 7.2E-36 1.6E-40 259.2 17.0 129 72-219 38-173 (214)
21 COG0576 GrpE Molecular chapero 100.0 7.3E-36 1.6E-40 256.0 16.2 130 79-219 41-177 (193)
22 PRK10325 heat shock protein Gr 100.0 7.5E-36 1.6E-40 256.7 15.4 131 75-219 43-180 (197)
23 PRK14149 heat shock protein Gr 100.0 1.4E-35 3E-40 253.8 15.4 126 81-219 43-175 (191)
24 PRK14156 heat shock protein Gr 100.0 2.8E-34 6.1E-39 243.3 14.7 125 78-219 31-163 (177)
25 PRK14157 heat shock protein Gr 100.0 5.3E-34 1.1E-38 249.2 14.5 123 78-219 81-210 (227)
26 PRK14142 heat shock protein Gr 100.0 3.2E-32 7E-37 237.2 13.9 119 83-219 42-168 (223)
27 PRK14164 heat shock protein Gr 100.0 8.2E-32 1.8E-36 234.6 13.9 120 81-219 77-202 (218)
28 KOG3003|consensus 100.0 5.3E-31 1.1E-35 229.9 16.4 138 74-218 71-216 (236)
29 cd00446 GrpE GrpE is the adeni 100.0 5.3E-30 1.2E-34 207.8 13.6 117 91-219 2-125 (137)
30 PF01025 GrpE: GrpE; InterPro 100.0 2.6E-29 5.7E-34 207.6 9.8 137 71-219 8-151 (165)
31 PF06156 DUF972: Protein of un 91.6 0.41 8.8E-06 37.8 5.0 45 72-116 13-57 (107)
32 PRK13169 DNA replication intia 87.7 1.5 3.2E-05 35.0 5.4 43 72-114 13-55 (110)
33 COG4467 Regulator of replicati 84.7 1.6 3.4E-05 34.9 4.1 68 72-141 13-83 (114)
34 COG1579 Zn-ribbon protein, pos 83.1 20 0.00043 32.3 11.0 19 168-186 178-197 (239)
35 PF12329 TMF_DNA_bd: TATA elem 77.7 8.6 0.00019 28.3 5.7 43 71-113 30-72 (74)
36 cd07627 BAR_Vps5p The Bin/Amph 73.2 30 0.00066 29.8 9.0 54 81-134 143-196 (216)
37 PTZ00464 SNF-7-like protein; P 71.9 49 0.0011 29.0 10.0 98 72-177 23-121 (211)
38 PF07106 TBPIP: Tat binding pr 71.4 57 0.0012 26.9 10.9 73 73-145 71-143 (169)
39 cd07664 BAR_SNX2 The Bin/Amphi 70.3 36 0.00078 30.2 8.9 53 81-133 159-211 (234)
40 cd07623 BAR_SNX1_2 The Bin/Amp 67.3 48 0.001 28.9 9.0 50 82-131 150-199 (224)
41 PF06005 DUF904: Protein of un 66.1 36 0.00078 25.0 6.7 26 73-98 10-35 (72)
42 COG4026 Uncharacterized protei 64.3 26 0.00056 31.7 6.7 68 72-141 133-200 (290)
43 COG1579 Zn-ribbon protein, pos 63.8 90 0.002 28.1 10.1 66 72-137 36-101 (239)
44 PF09325 Vps5: Vps5 C terminal 62.0 68 0.0015 27.2 8.8 55 81-135 163-217 (236)
45 PRK00846 hypothetical protein; 59.9 71 0.0015 23.9 7.6 51 69-119 8-58 (77)
46 PF04977 DivIC: Septum formati 59.8 43 0.00092 23.6 6.1 32 76-107 19-50 (80)
47 PF10883 DUF2681: Protein of u 58.7 50 0.0011 25.3 6.5 38 77-114 26-63 (87)
48 PRK14160 heat shock protein Gr 58.5 1.1E+02 0.0024 27.0 9.6 49 75-127 55-103 (211)
49 PF09006 Surfac_D-trimer: Lung 58.4 29 0.00064 23.6 4.6 27 84-110 2-28 (46)
50 KOG1962|consensus 57.5 23 0.00049 31.5 5.1 30 83-112 181-210 (216)
51 PRK14150 heat shock protein Gr 57.2 90 0.002 27.0 8.7 23 103-125 56-78 (193)
52 PRK14155 heat shock protein Gr 56.3 1.4E+02 0.0031 26.2 10.2 53 68-120 14-70 (208)
53 KOG4196|consensus 56.2 44 0.00094 27.6 6.2 36 78-113 78-113 (135)
54 PF13805 Pil1: Eisosome compon 55.4 1.7E+02 0.0037 26.9 11.4 85 86-172 170-254 (271)
55 cd07665 BAR_SNX1 The Bin/Amphi 53.6 1.3E+02 0.0029 26.8 9.4 44 82-125 160-203 (234)
56 PF04102 SlyX: SlyX; InterPro 52.6 84 0.0018 22.5 6.9 48 72-119 2-49 (69)
57 PRK14147 heat shock protein Gr 50.6 1.6E+02 0.0034 25.0 9.3 59 71-129 22-84 (172)
58 PRK04406 hypothetical protein; 50.2 1E+02 0.0022 22.7 7.2 44 71-114 8-51 (75)
59 PF05529 Bap31: B-cell recepto 49.8 26 0.00056 29.6 4.2 33 72-104 159-191 (192)
60 PRK09039 hypothetical protein; 49.8 1.5E+02 0.0033 27.7 9.6 44 72-115 142-185 (343)
61 PRK06569 F0F1 ATP synthase sub 49.7 1.6E+02 0.0034 24.8 10.1 40 97-140 86-125 (155)
62 PF04977 DivIC: Septum formati 48.9 65 0.0014 22.6 5.6 31 74-104 24-54 (80)
63 PF03938 OmpH: Outer membrane 47.6 1.4E+02 0.0031 23.8 10.7 50 91-140 79-128 (158)
64 PF11559 ADIP: Afadin- and alp 46.5 1.3E+02 0.0029 24.2 7.7 47 72-118 71-117 (151)
65 PF09403 FadA: Adhesion protei 46.1 1.6E+02 0.0034 24.0 8.0 27 93-119 87-113 (126)
66 TIGR02169 SMC_prok_A chromosom 45.8 1.3E+02 0.0027 31.5 9.2 85 76-176 953-1037(1164)
67 PF06810 Phage_GP20: Phage min 45.7 1.7E+02 0.0037 24.3 8.4 55 75-129 28-93 (155)
68 cd00632 Prefoldin_beta Prefold 45.7 1.1E+02 0.0023 23.4 6.7 41 73-113 62-102 (105)
69 PRK11637 AmiB activator; Provi 45.6 88 0.0019 29.7 7.5 46 75-120 90-135 (428)
70 COG2433 Uncharacterized conser 45.0 2E+02 0.0044 29.5 10.0 72 72-143 420-492 (652)
71 PRK14163 heat shock protein Gr 44.6 2.3E+02 0.0049 25.2 10.3 60 69-128 42-105 (214)
72 PF13870 DUF4201: Domain of un 44.1 1.2E+02 0.0025 25.3 7.2 55 76-130 93-147 (177)
73 PRK00736 hypothetical protein; 44.0 1.2E+02 0.0026 21.8 7.9 46 73-118 4-49 (68)
74 PF14357 DUF4404: Domain of un 43.8 20 0.00043 27.0 2.2 18 162-179 68-85 (85)
75 PF10481 CENP-F_N: Cenp-F N-te 43.5 1.6E+02 0.0035 27.4 8.4 69 75-145 19-87 (307)
76 PRK00888 ftsB cell division pr 43.4 73 0.0016 24.8 5.5 35 75-109 28-62 (105)
77 KOG2911|consensus 42.9 3.2E+02 0.0069 26.9 10.7 31 73-103 239-269 (439)
78 COG3883 Uncharacterized protei 42.9 1.4E+02 0.0031 27.3 8.0 46 71-116 56-101 (265)
79 cd07596 BAR_SNX The Bin/Amphip 42.7 1.9E+02 0.0041 23.7 8.8 40 83-122 147-186 (218)
80 PRK14143 heat shock protein Gr 42.6 2.3E+02 0.0051 25.4 9.2 62 69-130 69-134 (238)
81 PF11559 ADIP: Afadin- and alp 42.1 1.8E+02 0.0038 23.5 7.8 91 77-175 41-136 (151)
82 PF11083 Streptin-Immun: Lanti 41.4 51 0.0011 25.9 4.2 39 74-112 52-90 (99)
83 PRK04325 hypothetical protein; 40.4 1.4E+02 0.0031 21.7 7.7 46 71-116 6-51 (74)
84 COG2433 Uncharacterized conser 39.5 4.5E+02 0.0097 27.1 14.8 44 69-112 424-467 (652)
85 TIGR03185 DNA_S_dndD DNA sulfu 39.3 3.8E+02 0.0082 27.0 11.2 33 79-111 433-465 (650)
86 PRK00888 ftsB cell division pr 38.9 1.1E+02 0.0025 23.7 5.9 26 76-101 36-61 (105)
87 PRK14139 heat shock protein Gr 38.3 2.6E+02 0.0057 24.1 8.7 61 69-129 34-98 (185)
88 PRK02119 hypothetical protein; 38.2 1.6E+02 0.0034 21.5 7.8 46 72-117 7-52 (73)
89 PF07926 TPR_MLP1_2: TPR/MLP1/ 38.0 2.1E+02 0.0045 22.8 7.8 46 75-120 67-112 (132)
90 PRK14154 heat shock protein Gr 37.9 2.9E+02 0.0062 24.4 9.1 61 69-129 54-118 (208)
91 PRK02793 phi X174 lysis protei 37.7 1.6E+02 0.0034 21.4 7.7 45 72-116 6-50 (72)
92 PF06120 Phage_HK97_TLTM: Tail 37.6 2.3E+02 0.0051 26.3 8.7 70 71-140 71-146 (301)
93 PRK14011 prefoldin subunit alp 37.5 2.2E+02 0.0048 23.5 7.7 52 69-120 83-134 (144)
94 smart00338 BRLZ basic region l 37.5 1.4E+02 0.003 20.7 5.9 34 75-108 27-60 (65)
95 TIGR02894 DNA_bind_RsfA transc 37.3 1.9E+02 0.0041 24.7 7.3 33 79-111 102-134 (161)
96 PRK14162 heat shock protein Gr 37.2 2.5E+02 0.0054 24.4 8.3 60 70-129 42-105 (194)
97 PF12761 End3: Actin cytoskele 37.2 1.4E+02 0.003 26.2 6.7 20 75-94 97-116 (195)
98 TIGR02338 gimC_beta prefoldin, 36.7 1.7E+02 0.0038 22.5 6.7 42 72-113 65-106 (110)
99 PF08581 Tup_N: Tup N-terminal 36.5 1.6E+02 0.0036 21.9 6.2 41 71-111 8-48 (79)
100 PF05791 Bacillus_HBL: Bacillu 36.5 2.6E+02 0.0057 23.6 8.4 48 75-122 104-151 (184)
101 PF04201 TPD52: Tumour protein 35.8 2.8E+02 0.006 23.7 10.5 93 73-171 28-135 (162)
102 PF00170 bZIP_1: bZIP transcri 35.7 1.5E+02 0.0032 20.5 6.2 34 75-108 27-60 (64)
103 TIGR03752 conj_TIGR03752 integ 35.5 3.9E+02 0.0084 26.6 10.1 39 72-110 57-95 (472)
104 PRK00295 hypothetical protein; 35.5 1.7E+02 0.0036 21.0 7.9 45 72-116 3-47 (68)
105 COG1196 Smc Chromosome segrega 35.5 1.9E+02 0.0042 31.3 8.9 116 78-211 946-1062(1163)
106 cd00890 Prefoldin Prefoldin is 34.6 1.6E+02 0.0035 22.5 6.2 45 69-113 82-126 (129)
107 PF03670 UPF0184: Uncharacteri 34.5 1.6E+02 0.0034 22.5 5.8 40 77-116 36-75 (83)
108 PRK10884 SH3 domain-containing 34.5 1.6E+02 0.0034 25.8 6.7 44 71-114 129-172 (206)
109 PRK14159 heat shock protein Gr 34.4 3E+02 0.0064 23.6 8.7 61 67-127 23-87 (176)
110 PF04728 LPP: Lipoprotein leuc 34.4 1.7E+02 0.0036 20.7 6.9 32 72-103 8-39 (56)
111 PRK14148 heat shock protein Gr 34.0 3.2E+02 0.0069 23.8 8.8 60 70-129 43-106 (195)
112 PF11500 Cut12: Spindle pole b 33.9 53 0.0011 27.7 3.5 22 100-121 71-92 (152)
113 PRK11637 AmiB activator; Provi 33.8 2.2E+02 0.0048 27.0 8.2 35 80-114 88-122 (428)
114 PF02388 FemAB: FemAB family; 33.8 2.9E+02 0.0063 26.2 8.9 50 72-121 240-295 (406)
115 PF14388 DUF4419: Domain of un 33.5 87 0.0019 28.8 5.2 42 100-145 143-186 (299)
116 cd07623 BAR_SNX1_2 The Bin/Amp 33.2 3.2E+02 0.007 23.6 9.0 91 22-133 111-208 (224)
117 PRK03947 prefoldin subunit alp 33.1 2.1E+02 0.0046 22.7 6.9 46 71-116 91-136 (140)
118 PF04012 PspA_IM30: PspA/IM30 33.0 3E+02 0.0066 23.4 8.2 68 72-140 103-170 (221)
119 cd00632 Prefoldin_beta Prefold 32.8 54 0.0012 25.1 3.2 44 65-108 61-104 (105)
120 KOG1962|consensus 32.8 1.3E+02 0.0029 26.7 6.0 41 72-112 149-189 (216)
121 TIGR02169 SMC_prok_A chromosom 31.8 3.3E+02 0.0071 28.5 9.7 19 126-144 526-544 (1164)
122 PRK14153 heat shock protein Gr 31.6 3.5E+02 0.0076 23.5 9.0 59 69-127 35-97 (194)
123 PRK14151 heat shock protein Gr 31.5 3.3E+02 0.0071 23.2 9.0 57 70-126 23-83 (176)
124 PF05529 Bap31: B-cell recepto 31.4 1.3E+02 0.0027 25.3 5.5 34 81-114 154-187 (192)
125 PRK14157 heat shock protein Gr 31.1 3.9E+02 0.0084 23.9 8.9 59 70-128 80-142 (227)
126 KOG3647|consensus 30.6 1.5E+02 0.0033 27.6 6.1 33 81-113 126-158 (338)
127 PF10211 Ax_dynein_light: Axon 30.6 3.4E+02 0.0074 23.2 8.1 36 78-113 124-159 (189)
128 cd07596 BAR_SNX The Bin/Amphip 30.3 3.1E+02 0.0066 22.5 9.4 45 74-118 145-193 (218)
129 TIGR01069 mutS2 MutS2 family p 30.1 5.3E+02 0.011 26.9 10.7 12 205-216 638-649 (771)
130 PF10779 XhlA: Haemolysin XhlA 30.1 2.1E+02 0.0045 20.4 6.6 37 75-111 7-43 (71)
131 PF10168 Nup88: Nuclear pore c 30.0 5.2E+02 0.011 26.8 10.5 10 131-140 627-636 (717)
132 KOG4603|consensus 29.9 3.8E+02 0.0082 23.4 9.0 22 92-113 120-141 (201)
133 PF10211 Ax_dynein_light: Axon 29.8 3.5E+02 0.0077 23.1 8.3 36 72-107 125-160 (189)
134 TIGR03545 conserved hypothetic 29.7 2.7E+02 0.0058 28.0 8.3 46 76-121 214-259 (555)
135 PF08826 DMPK_coil: DMPK coile 29.5 2.1E+02 0.0046 20.4 6.7 34 80-113 24-57 (61)
136 KOG4191|consensus 29.2 3.2E+02 0.0069 27.2 8.3 58 68-125 402-465 (516)
137 KOG2856|consensus 29.0 5.6E+02 0.012 25.1 10.6 51 74-124 177-227 (472)
138 TIGR02977 phageshock_pspA phag 28.9 3.8E+02 0.0082 23.1 9.3 38 75-112 100-137 (219)
139 PF03194 LUC7: LUC7 N_terminus 28.7 4.3E+02 0.0093 23.7 9.2 94 73-177 122-235 (254)
140 PF08946 Osmo_CC: Osmosensory 28.7 1.2E+02 0.0027 20.6 3.9 24 71-94 16-39 (46)
141 PF07798 DUF1640: Protein of u 28.2 3.5E+02 0.0077 22.5 8.6 47 74-120 58-105 (177)
142 PRK00409 recombination and DNA 28.0 5E+02 0.011 27.1 10.1 14 205-218 650-663 (782)
143 KOG1853|consensus 28.0 4.9E+02 0.011 24.1 9.2 26 118-143 105-130 (333)
144 PRK14156 heat shock protein Gr 27.6 3.9E+02 0.0085 22.9 9.0 48 72-119 32-83 (177)
145 PF01920 Prefoldin_2: Prefoldi 27.4 2.5E+02 0.0055 20.6 6.7 39 73-111 61-99 (106)
146 PRK14140 heat shock protein Gr 27.3 4.1E+02 0.0089 23.0 9.3 59 68-126 38-100 (191)
147 PF12958 DUF3847: Protein of u 27.3 2.8E+02 0.0061 21.1 8.4 28 76-103 3-30 (86)
148 PRK14127 cell division protein 27.1 2.2E+02 0.0049 22.6 5.8 36 77-112 33-68 (109)
149 PRK14144 heat shock protein Gr 27.1 4.3E+02 0.0093 23.1 8.8 59 71-129 49-111 (199)
150 PF05377 FlaC_arch: Flagella a 26.8 2.3E+02 0.005 19.9 5.2 21 77-97 17-37 (55)
151 cd07625 BAR_Vps17p The Bin/Amp 26.7 4.6E+02 0.0099 23.3 9.4 58 75-132 158-215 (230)
152 PTZ00446 vacuolar sorting prot 26.5 4.3E+02 0.0093 22.9 11.3 98 72-177 25-127 (191)
153 COG3883 Uncharacterized protei 26.4 3.7E+02 0.0079 24.7 7.8 36 74-109 52-87 (265)
154 COG4026 Uncharacterized protei 26.2 1.9E+02 0.0042 26.3 5.9 24 78-101 153-176 (290)
155 PF10146 zf-C4H2: Zinc finger- 26.2 4.7E+02 0.01 23.3 10.5 71 75-146 33-107 (230)
156 PRK10869 recombination and rep 26.1 2.4E+02 0.0052 28.0 7.2 26 114-139 363-388 (553)
157 KOG0971|consensus 25.9 6.8E+02 0.015 27.4 10.4 51 90-141 267-317 (1243)
158 PF03357 Snf7: Snf7; InterPro 25.8 1.8E+02 0.0039 23.2 5.3 29 74-102 8-36 (171)
159 PF06005 DUF904: Protein of un 25.6 2.7E+02 0.0059 20.3 9.6 38 75-112 19-63 (72)
160 TIGR03752 conj_TIGR03752 integ 25.6 6.3E+02 0.014 25.1 9.8 70 72-141 64-139 (472)
161 TIGR02209 ftsL_broad cell divi 25.4 2.3E+02 0.0051 20.2 5.4 32 77-108 27-58 (85)
162 PRK14158 heat shock protein Gr 25.4 4.5E+02 0.0098 22.8 8.1 58 70-127 43-104 (194)
163 TIGR01069 mutS2 MutS2 family p 25.3 6.2E+02 0.013 26.4 10.2 22 93-114 530-551 (771)
164 PRK14141 heat shock protein Gr 25.1 4.8E+02 0.01 23.0 9.7 56 70-125 34-93 (209)
165 COG1382 GimC Prefoldin, chaper 24.9 1.1E+02 0.0023 24.8 3.7 38 75-112 71-108 (119)
166 KOG3003|consensus 24.9 5.1E+02 0.011 23.4 8.3 58 77-134 87-144 (236)
167 PRK13922 rod shape-determining 24.8 1.9E+02 0.0042 25.5 5.8 16 79-94 74-89 (276)
168 PF04728 LPP: Lipoprotein leuc 24.7 2.6E+02 0.0056 19.8 5.9 34 75-108 4-37 (56)
169 PRK09039 hypothetical protein; 24.6 5E+02 0.011 24.2 8.7 39 73-111 115-153 (343)
170 KOG0796|consensus 24.5 6E+02 0.013 24.0 10.1 94 73-177 121-231 (319)
171 TIGR01242 26Sp45 26S proteasom 24.5 1.8E+02 0.0039 26.8 5.7 33 79-111 4-36 (364)
172 PF08317 Spc7: Spc7 kinetochor 24.4 2.5E+02 0.0053 25.9 6.5 43 71-113 227-269 (325)
173 KOG4603|consensus 23.8 4.9E+02 0.011 22.7 12.4 74 74-147 79-152 (201)
174 COG3937 Uncharacterized conser 23.8 81 0.0018 25.2 2.7 31 69-99 78-108 (108)
175 PF01025 GrpE: GrpE; InterPro 23.8 3.9E+02 0.0085 21.5 8.3 24 91-114 39-62 (165)
176 PF02183 HALZ: Homeobox associ 23.7 2.3E+02 0.005 18.9 6.0 32 75-106 6-37 (45)
177 KOG2867|consensus 23.5 4E+02 0.0087 25.6 7.7 73 99-171 34-111 (367)
178 PF12325 TMF_TATA_bd: TATA ele 23.5 3.8E+02 0.0082 21.5 6.6 34 75-108 17-50 (120)
179 PF13600 DUF4140: N-terminal d 23.3 2.3E+02 0.0051 21.1 5.2 31 73-103 69-99 (104)
180 PF11932 DUF3450: Protein of u 23.3 5.1E+02 0.011 22.7 10.2 18 75-92 50-67 (251)
181 PF01166 TSC22: TSC-22/dip/bun 23.1 2E+02 0.0043 20.6 4.3 21 74-94 14-34 (59)
182 PF11348 DUF3150: Protein of u 23.1 4E+02 0.0087 23.9 7.5 60 81-142 81-141 (257)
183 COG1322 Predicted nuclease of 23.0 7.3E+02 0.016 24.4 10.4 65 73-137 76-140 (448)
184 COG5440 Uncharacterized conser 22.6 1.2E+02 0.0025 25.9 3.6 48 164-217 4-51 (161)
185 PRK13729 conjugal transfer pil 22.5 2E+02 0.0043 28.6 5.7 15 80-94 75-89 (475)
186 PF03962 Mnd1: Mnd1 family; I 22.4 4.9E+02 0.011 22.2 9.5 34 159-196 154-187 (188)
187 cd07667 BAR_SNX30 The Bin/Amph 22.3 5.8E+02 0.013 23.0 10.0 7 159-165 226-232 (240)
188 cd00584 Prefoldin_alpha Prefol 22.2 3.4E+02 0.0073 21.1 6.1 43 70-112 83-125 (129)
189 PF00261 Tropomyosin: Tropomyo 22.2 3.2E+02 0.007 23.8 6.6 40 73-112 7-46 (237)
190 PLN03217 transcription factor 22.2 1.9E+02 0.0041 22.4 4.3 52 69-120 19-70 (93)
191 COG1842 PspA Phage shock prote 21.8 5.6E+02 0.012 22.6 9.4 78 67-144 24-104 (225)
192 TIGR00293 prefoldin, archaeal 21.5 3.1E+02 0.0068 21.2 5.8 43 70-112 82-124 (126)
193 PRK05771 V-type ATP synthase s 21.4 4.5E+02 0.0098 26.4 8.2 36 72-107 213-248 (646)
194 KOG4643|consensus 21.3 5.1E+02 0.011 28.4 8.6 53 69-121 172-224 (1195)
195 cd07679 F-BAR_PACSIN2 The F-BA 21.2 4.7E+02 0.01 23.8 7.5 61 74-134 168-234 (258)
196 PRK14149 heat shock protein Gr 21.2 5.5E+02 0.012 22.3 9.5 52 75-126 44-99 (191)
197 KOG0981|consensus 20.9 3.9E+02 0.0085 27.6 7.4 51 73-123 635-697 (759)
198 PRK14146 heat shock protein Gr 20.9 5.8E+02 0.013 22.5 9.1 59 71-129 58-120 (215)
199 PF08172 CASP_C: CASP C termin 20.8 3.2E+02 0.0069 24.5 6.3 50 75-130 87-136 (248)
200 PRK14161 heat shock protein Gr 20.8 5.3E+02 0.012 22.0 9.9 52 75-126 27-82 (178)
201 PF05667 DUF812: Protein of un 20.8 7.4E+02 0.016 25.2 9.5 36 72-107 326-361 (594)
202 TIGR01005 eps_transp_fam exopo 20.7 9E+02 0.02 24.6 13.0 98 72-174 286-396 (754)
203 KOG0288|consensus 20.6 4.4E+02 0.0095 26.0 7.4 48 72-119 46-103 (459)
204 PF06810 Phage_GP20: Phage min 20.4 5E+02 0.011 21.5 7.5 24 83-106 53-76 (155)
205 PF13815 Dzip-like_N: Iguana/D 20.2 3.8E+02 0.0082 20.9 6.0 34 86-119 78-111 (118)
206 COG3074 Uncharacterized protei 20.2 3.8E+02 0.0082 20.0 8.7 65 71-135 8-77 (79)
207 PF11083 Streptin-Immun: Lanti 20.2 2.9E+02 0.0063 21.7 5.1 33 81-113 52-84 (99)
208 PF08826 DMPK_coil: DMPK coile 20.0 3.4E+02 0.0073 19.4 5.9 29 80-108 31-59 (61)
No 1
>PRK14153 heat shock protein GrpE; Provisional
Probab=100.00 E-value=4.6e-38 Score=269.66 Aligned_cols=134 Identities=20% Similarity=0.193 Sum_probs=124.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhhHHHHhhcCCcccccCCC
Q psy2067 74 EELEDLKKQIEALNEKNSDLLDKYKRALADGENARQRFNKQLEESKLYGIQSFCKDLLDIADTLSLANESVPKEEVKDSN 153 (225)
Q Consensus 74 ~~i~~L~~el~~leee~~elkdk~lR~~AEfEN~RkR~~KE~e~akk~aie~f~kdLLpViDnLERAL~~~~~~~~~~~~ 153 (225)
.++..+..+++.+++++.+++++|+|++|||+|||||+.||++++++||+++|+++||||+|||+||+.+.+..
T Consensus 33 ~~~~~~~~ei~~l~~e~~elkd~~lR~~AEfeN~rKR~~kE~e~~~~~a~~~~~~~LLpv~DnLerAl~~~~~~------ 106 (194)
T PRK14153 33 PEDSTADSETEKCREEIESLKEQLFRLAAEFDNFRKRTAREMEENRKFVLEQVLLDLLEVTDNFERALESARTA------ 106 (194)
T ss_pred hhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHhccccc------
Confidence 44677888999999999999999999999999999999999999999999999999999999999999987642
Q ss_pred hhHHhHHHHHHHHHHHHHHHhcccCCCceEeccCCCCCCCCCCccchhhc-------ccCCeeeeeecccchh
Q psy2067 154 PHLKSLYEGLLMTDGNLKKHAHPVEYPSVVIIPDSIAVMERISLEQSLSI-------FLANFSVEWLQSPLAK 219 (225)
Q Consensus 154 ~~~~~l~~Gvemi~kqL~~vLek~Gvgv~~I~p~~~~~g~~FDP~~heAi-------~~~n~VveV~QkGY~~ 219 (225)
....+|++||+||+++|.++|+++ ||++|+| .|.+|||+.|+|+ .++|+|++|+|+||..
T Consensus 107 ~~~~~l~~Gvemi~k~~~~vL~k~--Gv~~I~~----~G~~FDP~~HEAv~~~~~~~~~~gtVi~V~qkGY~l 173 (194)
T PRK14153 107 EDMNSIVEGIEMVSKQFFSILEKY--GLERIEC----EGEEFDPHRHEAMMHVETSEVPDNTIVDVCKPGYAL 173 (194)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHC--CCeeeCC----CCCCCChhHhceeeeeCCCCCCcCEEEEEeeCCcEe
Confidence 346899999999999999999999 7799999 8999999999999 5789999999999974
No 2
>PRK14148 heat shock protein GrpE; Provisional
Probab=100.00 E-value=1.4e-37 Score=266.86 Aligned_cols=136 Identities=24% Similarity=0.300 Sum_probs=126.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhhHHHHhhcCCcccccC
Q psy2067 72 IKEELEDLKKQIEALNEKNSDLLDKYKRALADGENARQRFNKQLEESKLYGIQSFCKDLLDIADTLSLANESVPKEEVKD 151 (225)
Q Consensus 72 ~~~~i~~L~~el~~leee~~elkdk~lR~~AEfEN~RkR~~KE~e~akk~aie~f~kdLLpViDnLERAL~~~~~~~~~~ 151 (225)
...+++.++.+++.+++++++++++|+|++|||+|||||+.||++++++||+++|+++||||+|||+||+.+.+..
T Consensus 38 ~~~e~~~l~~~l~~l~~e~~elkd~~lR~~Ae~eN~rKR~~rE~e~~~~~a~~~~~~~LLpV~DnlerAl~~~~~~---- 113 (195)
T PRK14148 38 VEEQLERAKDTIKELEDSCDQFKDEALRAKAEMENIRKRAERDVSNARKFGIEKFAKELLPVIDSIEQALKHEVKL---- 113 (195)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHhccccc----
Confidence 4567888999999999999999999999999999999999999999999999999999999999999999987642
Q ss_pred CChhHHhHHHHHHHHHHHHHHHhcccCCCceEeccCCCCCCCCCCccchhhc-------ccCCeeeeeecccchh
Q psy2067 152 SNPHLKSLYEGLLMTDGNLKKHAHPVEYPSVVIIPDSIAVMERISLEQSLSI-------FLANFSVEWLQSPLAK 219 (225)
Q Consensus 152 ~~~~~~~l~~Gvemi~kqL~~vLek~Gvgv~~I~p~~~~~g~~FDP~~heAi-------~~~n~VveV~QkGY~~ 219 (225)
....+++.||+||+++|.++|+++ ||++|+| .|.+|||+.|+|| +++|+|++|+|+||..
T Consensus 114 --~~~~~l~~Gv~mi~k~l~~vL~k~--Gv~~I~~----~G~~FDP~~HEAv~~~~~~~~~~gtVv~V~qkGY~l 180 (195)
T PRK14148 114 --EEAIAMKEGIELTAKMLVDILKKN--GVEELDP----KGEKFDPNLHEAMAMIPNPEFEDNTIFDVFQKGYML 180 (195)
T ss_pred --hhHHHHHHHHHHHHHHHHHHHHHC--CCEEeCC----CCCCCChhHhheeeeeCCCCCCcCEEEEEeeCCcEe
Confidence 246789999999999999999999 7789998 8999999999999 5789999999999975
No 3
>PRK14161 heat shock protein GrpE; Provisional
Probab=100.00 E-value=1.2e-37 Score=264.17 Aligned_cols=143 Identities=27% Similarity=0.368 Sum_probs=128.6
Q ss_pred CCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhhHHHHhhcCCcc
Q psy2067 68 VDPKIKEELEDLKKQIEALNEKNSDLLDKYKRALADGENARQRFNKQLEESKLYGIQSFCKDLLDIADTLSLANESVPKE 147 (225)
Q Consensus 68 ~~~~~~~~i~~L~~el~~leee~~elkdk~lR~~AEfEN~RkR~~KE~e~akk~aie~f~kdLLpViDnLERAL~~~~~~ 147 (225)
+++-+.+.++.++++++.+++++++++++|+|++|||+|||||+.||++++++||+++|+++||||+|||+||+.+.+.+
T Consensus 13 ~~~~~~~~~~~~~~ei~~l~~e~~elkd~~lR~~AefeN~rkR~~ke~~~~~~~a~~~~~~~LLpv~DnlerAl~~~~~~ 92 (178)
T PRK14161 13 INDIAEEIVETANPEITALKAEIEELKDKLIRTTAEIDNTRKRLEKARDEAKDYAIATFAKELLNVSDNLSRALAHKPAN 92 (178)
T ss_pred HHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHhcCccc
Confidence 34456667788899999999999999999999999999999999999999999999999999999999999999987653
Q ss_pred cccCCChhHHhHHHHHHHHHHHHHHHhcccCCCceEeccCCCCCCCCCCccchhhc-------ccCCeeeeeecccchh
Q psy2067 148 EVKDSNPHLKSLYEGLLMTDGNLKKHAHPVEYPSVVIIPDSIAVMERISLEQSLSI-------FLANFSVEWLQSPLAK 219 (225)
Q Consensus 148 ~~~~~~~~~~~l~~Gvemi~kqL~~vLek~Gvgv~~I~p~~~~~g~~FDP~~heAi-------~~~n~VveV~QkGY~~ 219 (225)
. +....++++||+||+++|.++|+++ ||++|+|. +|.+|||+.|+|+ .++|+|++|+|+||..
T Consensus 93 ~----~~~~~~~~~Gv~mi~k~l~~vL~~~--Gv~~I~~~---~G~~FDP~~HEAv~~~~~~~~~~gtVi~v~q~GY~l 162 (178)
T PRK14161 93 S----DVEVTNIIAGVQMTKDELDKVFHKH--HIEEIKPE---IGSMFDYNLHNAISQIEHPDHAPNSIITLMQSGYKI 162 (178)
T ss_pred c----chhHHHHHHHHHHHHHHHHHHHHHC--CCEEecCC---CCCCCChHHhhhheeeCCCCCCcCEEEEEeeCCcEe
Confidence 1 2335789999999999999999999 77899873 5999999999999 5689999999999974
No 4
>PRK14162 heat shock protein GrpE; Provisional
Probab=100.00 E-value=2.7e-37 Score=264.97 Aligned_cols=139 Identities=29% Similarity=0.301 Sum_probs=126.8
Q ss_pred CcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhhHHHHhhcCCccc
Q psy2067 69 DPKIKEELEDLKKQIEALNEKNSDLLDKYKRALADGENARQRFNKQLEESKLYGIQSFCKDLLDIADTLSLANESVPKEE 148 (225)
Q Consensus 69 ~~~~~~~i~~L~~el~~leee~~elkdk~lR~~AEfEN~RkR~~KE~e~akk~aie~f~kdLLpViDnLERAL~~~~~~~ 148 (225)
+.....++..++.+++.+++++++++++|+|++|||+|||||+.||++++++||+++|+++||||+|||+||+.+.+.
T Consensus 34 ~~~~~~e~~~l~~~l~~l~~e~~elkd~~lR~~AEfeN~rkR~~kE~e~~~~~a~~~~~~~LLpV~DnLerAl~~~~~-- 111 (194)
T PRK14162 34 DQEKQNPVEDLEKEIADLKAKNKDLEDKYLRSQAEIQNMQNRYAKERAQLIKYESQSLAKDVLPAMDNLERALAVKAD-- 111 (194)
T ss_pred ccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHhcccc--
Confidence 344456778899999999999999999999999999999999999999999999999999999999999999998754
Q ss_pred ccCCChhHHhHHHHHHHHHHHHHHHhcccCCCceEeccCCCCCCCCCCccchhhc--------ccCCeeeeeecccchh
Q psy2067 149 VKDSNPHLKSLYEGLLMTDGNLKKHAHPVEYPSVVIIPDSIAVMERISLEQSLSI--------FLANFSVEWLQSPLAK 219 (225)
Q Consensus 149 ~~~~~~~~~~l~~Gvemi~kqL~~vLek~Gvgv~~I~p~~~~~g~~FDP~~heAi--------~~~n~VveV~QkGY~~ 219 (225)
+....+|+.||+||+++|.++|+++ ||++|+| +|.+|||+.|+|| .++|+|++|+|+||..
T Consensus 112 ----~~~~~~l~~Gvemi~k~l~~vL~~~--GV~~I~~----~G~~FDP~~HEAv~~~~~~~~~~~gtVv~v~qkGY~l 180 (194)
T PRK14162 112 ----DEAAKQLKKGVQMTLDHLVKALKDH--GVTEIKA----DGEKFDPTLHQAVQTVAAENDDQKDHVVQVLQKGYQY 180 (194)
T ss_pred ----chhHHHHHHHHHHHHHHHHHHHHHC--CCEEeCC----CCCCCChhHhhhheeecCCCCCCcCEEEEEeeCCcEe
Confidence 3356899999999999999999999 7789998 8999999999999 2369999999999974
No 5
>PRK14151 heat shock protein GrpE; Provisional
Probab=100.00 E-value=2.9e-37 Score=261.33 Aligned_cols=134 Identities=22% Similarity=0.284 Sum_probs=123.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhhHHHHhhcCCcccccCCCh
Q psy2067 75 ELEDLKKQIEALNEKNSDLLDKYKRALADGENARQRFNKQLEESKLYGIQSFCKDLLDIADTLSLANESVPKEEVKDSNP 154 (225)
Q Consensus 75 ~i~~L~~el~~leee~~elkdk~lR~~AEfEN~RkR~~KE~e~akk~aie~f~kdLLpViDnLERAL~~~~~~~~~~~~~ 154 (225)
....++++++.+++++++++++|+|++|||+|||||++||++++++||+++|+++||||+|||+||+.+.+.+ +.
T Consensus 21 ~~~~l~~~i~~le~e~~el~d~~lR~~Ae~eN~rkR~~kE~e~~~~~a~~~~~~~LLpv~DnlerAl~~~~~~-----~~ 95 (176)
T PRK14151 21 AGDDLTARVQELEEQLAAAKDQSLRAAADLQNVRRRAEQDVEKAHKFALEKFAGDLLPVVDSLERGLELSSAD-----DE 95 (176)
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHhccccc-----ch
Confidence 5566788899999999999999999999999999999999999999999999999999999999999987543 34
Q ss_pred hHHhHHHHHHHHHHHHHHHhcccCCCceEeccCCCCCCCCCCccchhhc-------ccCCeeeeeecccchh
Q psy2067 155 HLKSLYEGLLMTDGNLKKHAHPVEYPSVVIIPDSIAVMERISLEQSLSI-------FLANFSVEWLQSPLAK 219 (225)
Q Consensus 155 ~~~~l~~Gvemi~kqL~~vLek~Gvgv~~I~p~~~~~g~~FDP~~heAi-------~~~n~VveV~QkGY~~ 219 (225)
..+++++||+||+++|.++|+++ ||++|+| .|.+|||+.|+|+ .++|+|++|+|+||..
T Consensus 96 ~~~~~~~Gv~mi~k~l~~~L~k~--Gv~~i~~----~G~~FDP~~HEAv~~~~~~~~~~gtI~~v~qkGY~l 161 (176)
T PRK14151 96 AIKPMREGVELTLKMFQDTLKRY--QLEAVDP----HGEPFNPEHHQAMAMQESADVEPNSVLKVFQKGYLL 161 (176)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHC--CCEEeCC----CCCCCCHHHhhcceeeCCCCCCcCeEEEEeeCCcEE
Confidence 56899999999999999999999 7789998 8999999999999 5789999999999974
No 6
>PRK14158 heat shock protein GrpE; Provisional
Probab=100.00 E-value=5.4e-37 Score=263.08 Aligned_cols=137 Identities=21% Similarity=0.228 Sum_probs=125.4
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhhHHHHhhcCCccccc
Q psy2067 71 KIKEELEDLKKQIEALNEKNSDLLDKYKRALADGENARQRFNKQLEESKLYGIQSFCKDLLDIADTLSLANESVPKEEVK 150 (225)
Q Consensus 71 ~~~~~i~~L~~el~~leee~~elkdk~lR~~AEfEN~RkR~~KE~e~akk~aie~f~kdLLpViDnLERAL~~~~~~~~~ 150 (225)
....++..++.+++.+++++.+++++|+|++|||+|||||++||++++++||+++|+++||||+|||+||+.+.+.
T Consensus 37 ~~~~~~~~le~~l~~le~e~~el~d~~lR~~AefeN~RkR~~kE~e~~~~~a~~~~~~~lLpV~DnLerAl~~~~~---- 112 (194)
T PRK14158 37 AAADRIKELEEALAAKEAEAAANWDKYLRERADLENYRKRVQKEKEELLKYGNESLILEILPAVDNMERALDHADE---- 112 (194)
T ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHhccCc----
Confidence 3445678899999999999999999999999999999999999999999999999999999999999999998653
Q ss_pred CCChhHHhHHHHHHHHHHHHHHHhcccCCCceEeccCCCCCCCCCCccchhhc-------ccCCeeeeeecccchh
Q psy2067 151 DSNPHLKSLYEGLLMTDGNLKKHAHPVEYPSVVIIPDSIAVMERISLEQSLSI-------FLANFSVEWLQSPLAK 219 (225)
Q Consensus 151 ~~~~~~~~l~~Gvemi~kqL~~vLek~Gvgv~~I~p~~~~~g~~FDP~~heAi-------~~~n~VveV~QkGY~~ 219 (225)
....++++||+||+++|.++|+++ ||++|+|. +|.+|||+.|+|| .++|+|++|+|+||..
T Consensus 113 ---~~~~~i~~Gv~mi~k~l~~vLek~--Gv~~I~~~---~G~~FDP~~HEAv~~~~~~~~~~gtVv~v~qkGY~l 180 (194)
T PRK14158 113 ---ESMSAIIEGIRMTLSMLLSTLKKF--GVTPVEAE---KGTPFDPAYHQAMCQVESAEQEPNTVVAVFQKGYLL 180 (194)
T ss_pred ---chHHHHHHHHHHHHHHHHHHHHHC--CCEEecCC---CCCCCChHHhhhheeecCCCCCcCEEEEEeeCCcEe
Confidence 246789999999999999999999 77899863 6999999999999 5789999999999974
No 7
>PRK14146 heat shock protein GrpE; Provisional
Probab=100.00 E-value=4.2e-37 Score=267.51 Aligned_cols=132 Identities=15% Similarity=0.183 Sum_probs=122.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhhHHHHhhcCCcccccCCChh
Q psy2067 76 LEDLKKQIEALNEKNSDLLDKYKRALADGENARQRFNKQLEESKLYGIQSFCKDLLDIADTLSLANESVPKEEVKDSNPH 155 (225)
Q Consensus 76 i~~L~~el~~leee~~elkdk~lR~~AEfEN~RkR~~KE~e~akk~aie~f~kdLLpViDnLERAL~~~~~~~~~~~~~~ 155 (225)
+..|+.++..+++++++++++|+|++|||+|||||+.||++++++||+++|+++||||+|||+||+.+.+. +..
T Consensus 56 ~~~l~~~l~~l~~e~~el~d~~lR~~AdfeN~rkR~~kE~e~~~~~a~e~~~~~lLpv~DnlerAl~~~~~------~~~ 129 (215)
T PRK14146 56 ETSLQKELDNAKKEIESLKDSWARERAEFQNFKRRSAQEFVSIRKEAVKSLVSGFLNPIDNLERVGATQNQ------SEE 129 (215)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHhcccc------cch
Confidence 56678889999999999999999999999999999999999999999999999999999999999988653 235
Q ss_pred HHhHHHHHHHHHHHHHHHhcccCCCceEeccCCCCCCCCCCccchhhc-------ccCCeeeeeecccchh
Q psy2067 156 LKSLYEGLLMTDGNLKKHAHPVEYPSVVIIPDSIAVMERISLEQSLSI-------FLANFSVEWLQSPLAK 219 (225)
Q Consensus 156 ~~~l~~Gvemi~kqL~~vLek~Gvgv~~I~p~~~~~g~~FDP~~heAi-------~~~n~VveV~QkGY~~ 219 (225)
..+|++||+||+++|.++|+++ ||++|+| +|.+|||+.|+|| +++|+|++|+|+||..
T Consensus 130 ~~~l~~Gv~mi~k~l~~~L~k~--Gv~~i~~----~G~~FDP~~HeAv~~~~~~~~~~g~Vv~v~qkGY~l 194 (215)
T PRK14146 130 LKPFVEGVKMILKEFYSVLEKS--NVIRFDP----KGEPFDPMSMEALSSEEGDQYSEETVIDVYQAGYYY 194 (215)
T ss_pred hhHHHHHHHHHHHHHHHHHHHC--cCeeeCC----CCCCCChhHhceeeeecCCCCCcCEEEEEeeCCeEe
Confidence 6899999999999999999999 6789998 8999999999999 5789999999999964
No 8
>PRK14147 heat shock protein GrpE; Provisional
Probab=100.00 E-value=5.3e-37 Score=258.93 Aligned_cols=131 Identities=23% Similarity=0.264 Sum_probs=120.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhhHHHHhhcCCcccccCCCh
Q psy2067 75 ELEDLKKQIEALNEKNSDLLDKYKRALADGENARQRFNKQLEESKLYGIQSFCKDLLDIADTLSLANESVPKEEVKDSNP 154 (225)
Q Consensus 75 ~i~~L~~el~~leee~~elkdk~lR~~AEfEN~RkR~~KE~e~akk~aie~f~kdLLpViDnLERAL~~~~~~~~~~~~~ 154 (225)
+.+.+..+++.+++++++++++|+|++|||+|||||++||++++++||.++|+++||||+|||+||+.+.+.
T Consensus 19 ~~~~l~~~l~~l~~e~~elkd~~lR~~Ad~eN~rkR~~kE~e~~~~~a~~~~~~~lLpv~DnlerAl~~~~~-------- 90 (172)
T PRK14147 19 ETDPLKAEVESLRSEIALVKADALRERADLENQRKRIARDVEQARKFANEKLLGELLPVFDSLDAGLTAAGT-------- 90 (172)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHhcccc--------
Confidence 444577889999999999999999999999999999999999999999999999999999999999987653
Q ss_pred hHHhHHHHHHHHHHHHHHHhcccCCCceEeccCCCCCCCCCCccchhhc-------ccCCeeeeeecccchh
Q psy2067 155 HLKSLYEGLLMTDGNLKKHAHPVEYPSVVIIPDSIAVMERISLEQSLSI-------FLANFSVEWLQSPLAK 219 (225)
Q Consensus 155 ~~~~l~~Gvemi~kqL~~vLek~Gvgv~~I~p~~~~~g~~FDP~~heAi-------~~~n~VveV~QkGY~~ 219 (225)
...++++||+||+++|.++|+++ ||++|+| +|.+|||+.|+|| .++|+|++|+|+||..
T Consensus 91 ~~~~l~~Gv~mi~k~l~~~L~~~--Gv~~i~~----~G~~FDP~~HeAv~~~~~~~~~~g~Vv~v~qkGY~l 156 (172)
T PRK14147 91 EPSPLRDGLELTYKQLLKVAADN--GLTLLDP----VGQPFNPEHHQAISQGEAEGVAPGHVVQVFQKGYLL 156 (172)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHC--CCEEeCC----CCCCCChHHhceeeeecCCCCCcCEEEEEeeCCcEe
Confidence 24689999999999999999999 7789998 8999999999999 5689999999999974
No 9
>PRK14155 heat shock protein GrpE; Provisional
Probab=100.00 E-value=7.2e-37 Score=264.81 Aligned_cols=137 Identities=26% Similarity=0.375 Sum_probs=124.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhhHHHHhhcCCcccccCCCh
Q psy2067 75 ELEDLKKQIEALNEKNSDLLDKYKRALADGENARQRFNKQLEESKLYGIQSFCKDLLDIADTLSLANESVPKEEVKDSNP 154 (225)
Q Consensus 75 ~i~~L~~el~~leee~~elkdk~lR~~AEfEN~RkR~~KE~e~akk~aie~f~kdLLpViDnLERAL~~~~~~~~~~~~~ 154 (225)
+.+.+..+++.+++++++++++|+|++|||+|||||++||++++++||+++|+++||||+|||+||+.+.+... .+.
T Consensus 14 ~~~~l~~~l~~le~e~~elkd~~lR~~AefeN~RKR~~kE~e~~~~~a~~~~~~~LLpV~DnLerAl~~~~~~~---~~~ 90 (208)
T PRK14155 14 EADDAAQEIEALKAEVAALKDQALRYAAEAENTKRRAEREMNDARAYAIQKFARDLLGAADNLGRATAASPKDS---ADP 90 (208)
T ss_pred cccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhhHHHHHhcccccc---cch
Confidence 44677888999999999999999999999999999999999999999999999999999999999999976421 134
Q ss_pred hHHhHHHHHHHHHHHHHHHhcccCCCceEeccCCCCCCCCCCccchhhc-------ccCCeeeeeecccchh
Q psy2067 155 HLKSLYEGLLMTDGNLKKHAHPVEYPSVVIIPDSIAVMERISLEQSLSI-------FLANFSVEWLQSPLAK 219 (225)
Q Consensus 155 ~~~~l~~Gvemi~kqL~~vLek~Gvgv~~I~p~~~~~g~~FDP~~heAi-------~~~n~VveV~QkGY~~ 219 (225)
.++++++||+||+++|.++|+++ ||++|+|. +|.+|||++|+|| +++|+|++|+|+||.+
T Consensus 91 ~~~~i~~Gvemi~k~~~~~L~k~--GV~~I~~~---~G~~FDP~~HEAv~~~~~~~~~~gtVi~V~qkGY~l 157 (208)
T PRK14155 91 AVKNFIIGVEMTEKELLGAFERN--GLKKIDPA---KGDKFDPHLHQAMMEQPSTEVAAGGVLQVMQAGYEL 157 (208)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHC--CCceecCC---CCCCCChhHhceeeeecCCCCCcCeEEEEeeCCeEe
Confidence 57899999999999999999999 66899874 6999999999999 5689999999999975
No 10
>PRK14140 heat shock protein GrpE; Provisional
Probab=100.00 E-value=1.2e-36 Score=260.46 Aligned_cols=137 Identities=28% Similarity=0.296 Sum_probs=125.8
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhhHHHHhhcCCccccc
Q psy2067 71 KIKEELEDLKKQIEALNEKNSDLLDKYKRALADGENARQRFNKQLEESKLYGIQSFCKDLLDIADTLSLANESVPKEEVK 150 (225)
Q Consensus 71 ~~~~~i~~L~~el~~leee~~elkdk~lR~~AEfEN~RkR~~KE~e~akk~aie~f~kdLLpViDnLERAL~~~~~~~~~ 150 (225)
+....+..++++++.+++++++++++|+|++|||+|||||+.||++++++||+++|+++||||+|||+||+.+.+.
T Consensus 34 ~~~~~~~~l~~~i~~l~~ei~elkd~~lR~~Ae~eN~rkR~~rE~~~~~~~a~~~~~~~LLpvlDnLerAl~~~~~---- 109 (191)
T PRK14140 34 SEAELLDEEQAKIAELEAKLDELEERYLRLQADFENYKRRIQKENEAAEKYRAQSLASDLLPALDNFERALQIEAD---- 109 (191)
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCc----
Confidence 3445778899999999999999999999999999999999999999999999999999999999999999998654
Q ss_pred CCChhHHhHHHHHHHHHHHHHHHhcccCCCceEeccCCCCCCCCCCccchhhc-------ccCCeeeeeecccchh
Q psy2067 151 DSNPHLKSLYEGLLMTDGNLKKHAHPVEYPSVVIIPDSIAVMERISLEQSLSI-------FLANFSVEWLQSPLAK 219 (225)
Q Consensus 151 ~~~~~~~~l~~Gvemi~kqL~~vLek~Gvgv~~I~p~~~~~g~~FDP~~heAi-------~~~n~VveV~QkGY~~ 219 (225)
+...++++.||+||+++|.++|+++ ||++|++ .|.+|||+.|+|+ .++|+|++|+|+||..
T Consensus 110 --~~~~~~i~~Gv~mi~k~l~~~L~k~--GV~~i~~----~Ge~FDP~~HEAv~~~~~~~~~~gtVv~V~qkGY~l 177 (191)
T PRK14140 110 --DEQTKSLLKGVEMVHRQLLEALKKE--GVEVIEA----VGEQFDPNLHQAVMQDEDEDFESNEVVEELQKGYKL 177 (191)
T ss_pred --cchHHHHHHHHHHHHHHHHHHHHHC--CCEeeCC----CCCCCChHHhccceeeCCCCCCcCeEEEEeeCCeEe
Confidence 3356899999999999999999999 6689988 8999999999999 5689999999999964
No 11
>PRK14141 heat shock protein GrpE; Provisional
Probab=100.00 E-value=6.9e-37 Score=265.00 Aligned_cols=137 Identities=25% Similarity=0.378 Sum_probs=123.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhhHHHHhhcCCcccccCCChhH
Q psy2067 77 EDLKKQIEALNEKNSDLLDKYKRALADGENARQRFNKQLEESKLYGIQSFCKDLLDIADTLSLANESVPKEEVKDSNPHL 156 (225)
Q Consensus 77 ~~L~~el~~leee~~elkdk~lR~~AEfEN~RkR~~KE~e~akk~aie~f~kdLLpViDnLERAL~~~~~~~~~~~~~~~ 156 (225)
..++.+++.+++++.+++++|+|++|||+|||||++||++++++||+++|+++||||+|||+||+.+++.+.....+..+
T Consensus 34 ~~~~~~i~~le~e~~elkd~~lR~~Ae~eN~RKR~~kE~e~~~~~a~~~~~~dLLpViDnLerAl~~~~~~~~~~~~~~~ 113 (209)
T PRK14141 34 DPEPDPLEALKAENAELKDRMLRLAAEMENLRKRTQRDVADARAYGIAGFARDMLSVSDNLRRALDAIPAEARAAADAGL 113 (209)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhHHHHHHhccccccccccchhH
Confidence 45778899999999999999999999999999999999999999999999999999999999999987643111113457
Q ss_pred HhHHHHHHHHHHHHHHHhcccCCCceEeccCCCCCCCCCCccchhhc-------ccCCeeeeeecccchh
Q psy2067 157 KSLYEGLLMTDGNLKKHAHPVEYPSVVIIPDSIAVMERISLEQSLSI-------FLANFSVEWLQSPLAK 219 (225)
Q Consensus 157 ~~l~~Gvemi~kqL~~vLek~Gvgv~~I~p~~~~~g~~FDP~~heAi-------~~~n~VveV~QkGY~~ 219 (225)
++|++||+||+++|.++|+++ ||++|+| +|.+|||++|+|| +++|+|++|+|+||..
T Consensus 114 ~~l~eGv~mi~k~l~~vLek~--GV~~I~~----~Ge~FDP~~HEAv~~~~~~~~~~gtVv~V~qkGY~l 177 (209)
T PRK14141 114 KALIEGVEMTERAMLNALERH--GVKKLDP----EGQKFDPNFHQAMFEVPNPDVPNNTVVQVVQAGYTI 177 (209)
T ss_pred HHHHHHHHHHHHHHHHHHHHC--CCEEECC----CCCCCChHHhceeeeecCCCCCcCEEEEEeeCCcEe
Confidence 899999999999999999999 7789998 8999999999999 5689999999999974
No 12
>PRK14139 heat shock protein GrpE; Provisional
Probab=100.00 E-value=1.2e-36 Score=259.26 Aligned_cols=133 Identities=27% Similarity=0.336 Sum_probs=123.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhhHHHHhhcCCcccccCC
Q psy2067 73 KEELEDLKKQIEALNEKNSDLLDKYKRALADGENARQRFNKQLEESKLYGIQSFCKDLLDIADTLSLANESVPKEEVKDS 152 (225)
Q Consensus 73 ~~~i~~L~~el~~leee~~elkdk~lR~~AEfEN~RkR~~KE~e~akk~aie~f~kdLLpViDnLERAL~~~~~~~~~~~ 152 (225)
..++..++.+++.+++++++++++|+|++|||+|||||++||++++++||+++|+++||||+|||+||+.+.+.
T Consensus 31 ~~e~~~l~~~l~~le~e~~elkd~~lR~~AefeN~rKR~~kE~e~~~~~a~~~~~~~LLpv~DnLerAl~~~~~------ 104 (185)
T PRK14139 31 EDAAPALEAELAEAEAKAAELQDSFLRAKAETENVRRRAQEDVAKAHKFAIESFAESLLPVKDSLEAALADESG------ 104 (185)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHhcccc------
Confidence 34677788999999999999999999999999999999999999999999999999999999999999977532
Q ss_pred ChhHHhHHHHHHHHHHHHHHHhcccCCCceEeccCCCCCCCCCCccchhhc------ccCCeeeeeecccchh
Q psy2067 153 NPHLKSLYEGLLMTDGNLKKHAHPVEYPSVVIIPDSIAVMERISLEQSLSI------FLANFSVEWLQSPLAK 219 (225)
Q Consensus 153 ~~~~~~l~~Gvemi~kqL~~vLek~Gvgv~~I~p~~~~~g~~FDP~~heAi------~~~n~VveV~QkGY~~ 219 (225)
...++++||+||+++|.++|+++ ||++|+| +|.+|||+.|+|+ .++|+|++|+|+||..
T Consensus 105 --~~~~l~~Gv~mi~k~l~~vL~k~--Gv~~I~~----~G~~FDP~~HEAv~~~~~~~~~gtVi~V~qkGY~l 169 (185)
T PRK14139 105 --DLEKLREGVELTLKQLTSAFEKG--RVVEINP----VGEKFDPHQHQAISMVPAEQEPNTVVAVLQKGYTI 169 (185)
T ss_pred --hHHHHHHHHHHHHHHHHHHHHHC--CCceeCC----CCCCCChHHhheeeeecCCCCcCEEEEEeeCCcEe
Confidence 35789999999999999999999 6789999 8999999999999 4689999999999974
No 13
>PRK14143 heat shock protein GrpE; Provisional
Probab=100.00 E-value=2.3e-36 Score=266.34 Aligned_cols=137 Identities=18% Similarity=0.178 Sum_probs=126.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhhHHHHhhcCCcccccC
Q psy2067 72 IKEELEDLKKQIEALNEKNSDLLDKYKRALADGENARQRFNKQLEESKLYGIQSFCKDLLDIADTLSLANESVPKEEVKD 151 (225)
Q Consensus 72 ~~~~i~~L~~el~~leee~~elkdk~lR~~AEfEN~RkR~~KE~e~akk~aie~f~kdLLpViDnLERAL~~~~~~~~~~ 151 (225)
...++..|+.+++.+++++++++++|+|++|||+|||||+.||++++++||+++|+++||||+|||+||+.+++..
T Consensus 65 ~~~~~~~l~~el~~l~~e~~elkd~~lR~~AdfeN~RKR~~kE~e~~~~~a~~~~~~~lLpV~DnLerAl~~~~~~---- 140 (238)
T PRK14143 65 NAARLAQLEQELESLKQELEELNSQYMRIAADFDNFRKRTSREQEDLRLQLKCNTLSEILPVVDNFERARQQLKPE---- 140 (238)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhccccc----
Confidence 5567888999999999999999999999999999999999999999999999999999999999999999987643
Q ss_pred CChhHHhHHHHHHHHHHHHHHHhcccCCCceEeccCCCCCCCCCCccchhhc-------ccCCeeeeeecccchh
Q psy2067 152 SNPHLKSLYEGLLMTDGNLKKHAHPVEYPSVVIIPDSIAVMERISLEQSLSI-------FLANFSVEWLQSPLAK 219 (225)
Q Consensus 152 ~~~~~~~l~~Gvemi~kqL~~vLek~Gvgv~~I~p~~~~~g~~FDP~~heAi-------~~~n~VveV~QkGY~~ 219 (225)
+.....|+.||+||+++|+++|+++ ||++|++ +|.+|||++|+|| +++|+|++|+|+||.+
T Consensus 141 -~~~~~~l~~Gve~i~k~l~~~L~k~--GV~~i~~----~G~~FDP~~HEAv~~~~~~~~~~gtVv~v~qkGY~l 208 (238)
T PRK14143 141 -GEEAQALHRSYQGLYKQLVDVLKRL--GVSPMRV----VGQEFDPNLHEAVLREPSDEHPEDVVLEELQRGYHL 208 (238)
T ss_pred -chhHHHHHHHHHHHHHHHHHHHHHC--CCeeeCC----CCCCCChHHhheeeeecCCCCCcCeEEEEeeCCcee
Confidence 2345789999999999999999999 7789998 8999999999999 5789999999999975
No 14
>PRK14154 heat shock protein GrpE; Provisional
Probab=100.00 E-value=1.2e-36 Score=263.30 Aligned_cols=136 Identities=24% Similarity=0.302 Sum_probs=124.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhhHHHHhhcCCcccccCCC
Q psy2067 74 EELEDLKKQIEALNEKNSDLLDKYKRALADGENARQRFNKQLEESKLYGIQSFCKDLLDIADTLSLANESVPKEEVKDSN 153 (225)
Q Consensus 74 ~~i~~L~~el~~leee~~elkdk~lR~~AEfEN~RkR~~KE~e~akk~aie~f~kdLLpViDnLERAL~~~~~~~~~~~~ 153 (225)
..+..|+++++.+++++++++++|+|++|||+|||||++||++++++||+++|+++||||+|||+|||.+.... +
T Consensus 52 ~~~~~l~~el~~le~e~~elkd~~lRl~ADfeNyRKR~~kE~e~~~~~a~e~~~~~LLpVlDnLeRAL~~~~~~-----~ 126 (208)
T PRK14154 52 PSREKLEGQLTRMERKVDEYKTQYLRAQAEMDNLRKRIEREKADIIKFGSKQLITDLLPVADSLIHGLESPASE-----D 126 (208)
T ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHhccccc-----c
Confidence 56777889999999999999999999999999999999999999999999999999999999999999876432 3
Q ss_pred hhHHhHHHHHHHHHHHHHHHhcccCCCceEeccCCCCCCCCCCccchhhc-------ccCCeeeeeecccchh
Q psy2067 154 PHLKSLYEGLLMTDGNLKKHAHPVEYPSVVIIPDSIAVMERISLEQSLSI-------FLANFSVEWLQSPLAK 219 (225)
Q Consensus 154 ~~~~~l~~Gvemi~kqL~~vLek~Gvgv~~I~p~~~~~g~~FDP~~heAi-------~~~n~VveV~QkGY~~ 219 (225)
+.+++|++||+||+++|.++|+++ ||++|+|. +|.+|||+.|+|+ .++|+|++|+|+||..
T Consensus 127 ~~~~~l~eGvemi~k~l~~vL~k~--GVe~I~~~---~G~~FDP~~HEAv~~~~~~~~~~gtVveV~qkGY~l 194 (208)
T PRK14154 127 PQVKSMRDGMSLTLDLLHNTLAKH--GVQVINPN---PGDPFDPALHEAMSVQAVPDAKPDTIIQVLQKGYQL 194 (208)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHC--CCEEecCC---CCCCCChhHhheeeeeCCCCCCcCEEEEEeeCCcEe
Confidence 456899999999999999999999 77899873 5999999999999 4689999999999974
No 15
>PRK14145 heat shock protein GrpE; Provisional
Probab=100.00 E-value=2.5e-36 Score=259.28 Aligned_cols=133 Identities=23% Similarity=0.213 Sum_probs=123.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhhHHHHhhcCCcccccC
Q psy2067 72 IKEELEDLKKQIEALNEKNSDLLDKYKRALADGENARQRFNKQLEESKLYGIQSFCKDLLDIADTLSLANESVPKEEVKD 151 (225)
Q Consensus 72 ~~~~i~~L~~el~~leee~~elkdk~lR~~AEfEN~RkR~~KE~e~akk~aie~f~kdLLpViDnLERAL~~~~~~~~~~ 151 (225)
...++..|++++..+++++++++++|+|++|||+|||||+.||++++++||+++|+++||||+|||+||+.+.+
T Consensus 43 ~~~e~~~l~~~l~~le~e~~el~d~~lR~~AEfeN~rkR~~kE~e~~~~~a~e~~~~~LLpV~DnLerAl~~~~------ 116 (196)
T PRK14145 43 TVDEIEELKQKLQQKEVEAQEYLDIAQRLKAEFENYRKRTEKEKSEMVEYGKEQVILELLPVMDNFERALASSG------ 116 (196)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHhccc------
Confidence 45567889999999999999999999999999999999999999999999999999999999999999998732
Q ss_pred CChhHHhHHHHHHHHHHHHHHHhcccCCCceEeccCCCCCCCCCCccchhhc-------ccCCeeeeeecccchh
Q psy2067 152 SNPHLKSLYEGLLMTDGNLKKHAHPVEYPSVVIIPDSIAVMERISLEQSLSI-------FLANFSVEWLQSPLAK 219 (225)
Q Consensus 152 ~~~~~~~l~~Gvemi~kqL~~vLek~Gvgv~~I~p~~~~~g~~FDP~~heAi-------~~~n~VveV~QkGY~~ 219 (225)
...++++||+||+++|.++|+++ ||++|+| .|.+|||+.|+|+ .++|+|++|+|+||..
T Consensus 117 ---~~~~l~~Gv~mi~k~l~~vL~k~--GVe~I~~----~Ge~FDP~~HEAv~~~~~~~~~~gtVv~V~qkGY~l 182 (196)
T PRK14145 117 ---DYNSLKEGIELIYRQFKKILDKF--GVKEIEA----EGQIFDPYKHHAVMQEEVEGKQPNEIIEVFQKGYYL 182 (196)
T ss_pred ---cHHHHHHHHHHHHHHHHHHHHHC--CCEEeCC----CCCCCCchhhheeeeeCCCCCCcCEEEEEeeCCcEe
Confidence 24679999999999999999999 7789998 8999999999999 5689999999999974
No 16
>PRK14144 heat shock protein GrpE; Provisional
Probab=100.00 E-value=3.8e-36 Score=258.58 Aligned_cols=133 Identities=23% Similarity=0.269 Sum_probs=122.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhhHHHHhhcCCcccccCCC
Q psy2067 74 EELEDLKKQIEALNEKNSDLLDKYKRALADGENARQRFNKQLEESKLYGIQSFCKDLLDIADTLSLANESVPKEEVKDSN 153 (225)
Q Consensus 74 ~~i~~L~~el~~leee~~elkdk~lR~~AEfEN~RkR~~KE~e~akk~aie~f~kdLLpViDnLERAL~~~~~~~~~~~~ 153 (225)
.++..+.++++.+++++++++++|+|++|||+|||||++||++++++||+++|+++||||+|||+||+.+++..
T Consensus 45 ~~~~~l~~~i~~le~e~~elkdk~lR~~AefeN~RKR~~kE~e~~~~~a~~~~~~~LLpV~DnLerAl~~~~~~------ 118 (199)
T PRK14144 45 PSYTALEEQLTLAEQKAHENWEKSVRALAELENVRRRMEREVANAHKYGVEKLISALLPVVDSLEQALQLADKN------ 118 (199)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHccccc------
Confidence 35567888999999999999999999999999999999999999999999999999999999999999987642
Q ss_pred hhHHhHHHHHHHHHHHHHHHhcccCCCceEeccCCCCCCCCCCccchhhc-------ccCCeeeeeecccchh
Q psy2067 154 PHLKSLYEGLLMTDGNLKKHAHPVEYPSVVIIPDSIAVMERISLEQSLSI-------FLANFSVEWLQSPLAK 219 (225)
Q Consensus 154 ~~~~~l~~Gvemi~kqL~~vLek~Gvgv~~I~p~~~~~g~~FDP~~heAi-------~~~n~VveV~QkGY~~ 219 (225)
...+++.||+||+++|.++|+++ ||++|+| +|.+|||+.|+|+ .++|+|++|+|+||..
T Consensus 119 -~~~~i~~Gv~mi~k~l~~~L~k~--GV~~I~~----~G~~FDP~~HEAv~~~~~~~~~~gtVv~V~qkGY~l 184 (199)
T PRK14144 119 -SDPSMHEGLELTMKLFLDALQKF--DVEQIDP----LGQTFDPQQHEAMSMQPAPGAPPNSVITVFQKGYKL 184 (199)
T ss_pred -chhHHHHHHHHHHHHHHHHHHHC--CCEEeCC----CCCCCChhHhceeeeeCCCCCCcCeEEEEeeCCcEE
Confidence 12579999999999999999999 7789998 8999999999999 4689999999999974
No 17
>PRK14160 heat shock protein GrpE; Provisional
Probab=100.00 E-value=2.1e-36 Score=262.24 Aligned_cols=134 Identities=22% Similarity=0.225 Sum_probs=122.8
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhhHHHHhhcCCcccc
Q psy2067 70 PKIKEELEDLKKQIEALNEKNSDLLDKYKRALADGENARQRFNKQLEESKLYGIQSFCKDLLDIADTLSLANESVPKEEV 149 (225)
Q Consensus 70 ~~~~~~i~~L~~el~~leee~~elkdk~lR~~AEfEN~RkR~~KE~e~akk~aie~f~kdLLpViDnLERAL~~~~~~~~ 149 (225)
..+..++..|++++..+++++++++++|+|++|||+|||||+.||++++++||+++|+++||||+|||+||+.+.+.
T Consensus 57 ~~l~~e~~~l~~~l~~l~~e~~elkd~~lR~~AefeN~RKR~~kE~e~~~~~a~e~~~~~LLpVlDnLerAl~~~~~--- 133 (211)
T PRK14160 57 EELKDENNKLKEENKKLENELEALKDRLLRTVAEYDNYRKRTAKEKEGIYSDACEDVLKELLPVLDNLERAAAVEGS--- 133 (211)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHhcccc---
Confidence 34556778899999999999999999999999999999999999999999999999999999999999999987432
Q ss_pred cCCChhHHhHHHHHHHHHHHHHHHhcccCCCceEeccCCCCCCCCCCccchhhc-------ccCCeeeeeecccchh
Q psy2067 150 KDSNPHLKSLYEGLLMTDGNLKKHAHPVEYPSVVIIPDSIAVMERISLEQSLSI-------FLANFSVEWLQSPLAK 219 (225)
Q Consensus 150 ~~~~~~~~~l~~Gvemi~kqL~~vLek~Gvgv~~I~p~~~~~g~~FDP~~heAi-------~~~n~VveV~QkGY~~ 219 (225)
..+++.||+||+++|.++|+++ ||++|+| .| +|||++|+|| +++|+|++|+|+||..
T Consensus 134 ------~~~l~~Gv~mi~kql~~vL~k~--GVe~I~~----~G-~FDP~~HEAv~~~~~~e~~~gtVveV~qkGY~l 197 (211)
T PRK14160 134 ------VEDLKKGIEMTVKQFKTSLEKL--GVEEIST----EG-EFDPNLHNAVMHVEDENYGENEIVEVFQKGYKR 197 (211)
T ss_pred ------hhHHHHHHHHHHHHHHHHHHHC--CCEEeCC----CC-CCChHHhceeeeeCCCCCCcCeEEEEeeCCcEe
Confidence 3579999999999999999999 7789988 67 8999999999 5789999999999974
No 18
>PRK14159 heat shock protein GrpE; Provisional
Probab=100.00 E-value=2.3e-36 Score=255.89 Aligned_cols=127 Identities=24% Similarity=0.226 Sum_probs=116.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhhHHHHhhcCCcccccCCChhHHhH
Q psy2067 80 KKQIEALNEKNSDLLDKYKRALADGENARQRFNKQLEESKLYGIQSFCKDLLDIADTLSLANESVPKEEVKDSNPHLKSL 159 (225)
Q Consensus 80 ~~el~~leee~~elkdk~lR~~AEfEN~RkR~~KE~e~akk~aie~f~kdLLpViDnLERAL~~~~~~~~~~~~~~~~~l 159 (225)
..+++.+++++++++++|+|++|||+|||||+.||++++++||+++|+++||||+|||+||+.+.+.+ ....++
T Consensus 29 ~~~i~~l~~e~~elkd~~lR~~AdfeN~rkR~~rE~e~~~~~a~~~~~~~LLpV~DnlerAl~~~~~~------~~~~~l 102 (176)
T PRK14159 29 DVEQNKLQKDYDELKDKYMRANAEFENIKKRMEKEKLSAMAYANESFAKDLLDVLDALEAAVNVECHD------EISLKI 102 (176)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHhccccc------chHHHH
Confidence 45677889999999999999999999999999999999999999999999999999999999987642 245789
Q ss_pred HHHHHHHHHHHHHHhcccCCCceEeccCCCCCCCCCCccchhhc-------ccCCeeeeeecccchh
Q psy2067 160 YEGLLMTDGNLKKHAHPVEYPSVVIIPDSIAVMERISLEQSLSI-------FLANFSVEWLQSPLAK 219 (225)
Q Consensus 160 ~~Gvemi~kqL~~vLek~Gvgv~~I~p~~~~~g~~FDP~~heAi-------~~~n~VveV~QkGY~~ 219 (225)
++||+||+++|.++|+++ ||++|++ .| +|||+.|+|| +++|+|++|+|+||..
T Consensus 103 ~~Gv~mi~k~l~~vL~k~--Gv~~I~~----~G-~FDP~~HEAv~~~~~~~~~~gtVv~v~qkGY~l 162 (176)
T PRK14159 103 KEGVQNTLDLFLKKLEKH--GVALIKE----EK-EFDPNLHEAMFHVDSENHQSGEVVQVLQKGYKI 162 (176)
T ss_pred HHHHHHHHHHHHHHHHHC--cCEecCC----CC-CCChHHhhhhheeCCCCCCcCeEEEEeeCCcEe
Confidence 999999999999999999 7789988 67 6999999999 5789999999999975
No 19
>PRK14150 heat shock protein GrpE; Provisional
Probab=100.00 E-value=3.2e-36 Score=258.22 Aligned_cols=134 Identities=26% Similarity=0.320 Sum_probs=118.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhhHHHHhhcCCcccccC
Q psy2067 72 IKEELEDLKKQIEALNEKNSDLLDKYKRALADGENARQRFNKQLEESKLYGIQSFCKDLLDIADTLSLANESVPKEEVKD 151 (225)
Q Consensus 72 ~~~~i~~L~~el~~leee~~elkdk~lR~~AEfEN~RkR~~KE~e~akk~aie~f~kdLLpViDnLERAL~~~~~~~~~~ 151 (225)
...++..|++++..+++ +++++|+|++|||+|||||+.||++++++||+++|+++||||+|||+||+.+...+
T Consensus 39 ~~~~i~~l~~~l~~~~~---~~kd~~lR~~AefeN~rkR~~kE~~~~~~~a~~~~~~~lL~v~DnlerAl~~~~~~---- 111 (193)
T PRK14150 39 ADARIAELEAQLAEAQA---EERDSVLRARAEVENIRRRAEQDVEKAHKFALEKFANELLPVIDNLERALQAADKE---- 111 (193)
T ss_pred hHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHhccccc----
Confidence 34456666666666555 68999999999999999999999999999999999999999999999999876532
Q ss_pred CChhHHhHHHHHHHHHHHHHHHhcccCCCceEeccCCCCCCCCCCccchhhc-------ccCCeeeeeecccchh
Q psy2067 152 SNPHLKSLYEGLLMTDGNLKKHAHPVEYPSVVIIPDSIAVMERISLEQSLSI-------FLANFSVEWLQSPLAK 219 (225)
Q Consensus 152 ~~~~~~~l~~Gvemi~kqL~~vLek~Gvgv~~I~p~~~~~g~~FDP~~heAi-------~~~n~VveV~QkGY~~ 219 (225)
+...++|+.||+||+++|.++|+++ ||++|+| +|.+|||++|+|+ .++|+|++|+|+||..
T Consensus 112 -~~~~~~~~~Gv~mi~~~l~~~L~~~--Gv~~i~~----~G~~FDP~~HeAv~~~~~~~~~~gtI~~v~q~GY~l 179 (193)
T PRK14150 112 -NEALKALIEGVELTLKSLLDTVAKF--GVEVVGP----VGEPFNPEVHQAISMQESEDHEPNTVMMVMQKGYTL 179 (193)
T ss_pred -chhHHHHHHHHHHHHHHHHHHHHHC--CCeeeCC----CCCCCCHhHcceeeeeCCCCCCcCEEEEEeeCCeEe
Confidence 3356899999999999999999999 7789998 8999999999999 5689999999999974
No 20
>PRK14163 heat shock protein GrpE; Provisional
Probab=100.00 E-value=7.2e-36 Score=259.20 Aligned_cols=129 Identities=16% Similarity=0.120 Sum_probs=120.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhhHHHHhhcCCcccccC
Q psy2067 72 IKEELEDLKKQIEALNEKNSDLLDKYKRALADGENARQRFNKQLEESKLYGIQSFCKDLLDIADTLSLANESVPKEEVKD 151 (225)
Q Consensus 72 ~~~~i~~L~~el~~leee~~elkdk~lR~~AEfEN~RkR~~KE~e~akk~aie~f~kdLLpViDnLERAL~~~~~~~~~~ 151 (225)
.......|+.++..+++++.+++++|+|++|||+|||||+.||++++++||+++|+++||||+|||+||+.+.
T Consensus 38 ~~~~~~~l~~~l~~l~~e~~el~d~~lR~~AEfeN~rkR~~kE~e~~~~~a~~~~~~~LLpVlDnLerAl~~~------- 110 (214)
T PRK14163 38 DAAATAGLTAQLDQVRTALGERTADLQRLQAEYQNYRRRVERDRVTVKEIAVANLLSELLPVLDDVGRAREHG------- 110 (214)
T ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhHHHHHHhch-------
Confidence 3344678899999999999999999999999999999999999999999999999999999999999999762
Q ss_pred CChhHHhHHHHHHHHHHHHHHHhcccCCCceEeccCCCCCCCCCCccchhhc-------ccCCeeeeeecccchh
Q psy2067 152 SNPHLKSLYEGLLMTDGNLKKHAHPVEYPSVVIIPDSIAVMERISLEQSLSI-------FLANFSVEWLQSPLAK 219 (225)
Q Consensus 152 ~~~~~~~l~~Gvemi~kqL~~vLek~Gvgv~~I~p~~~~~g~~FDP~~heAi-------~~~n~VveV~QkGY~~ 219 (225)
.|+.||+||+++|+++|+++ ||++|+| +|.+|||++|+|| .++|+|++|+|+||.+
T Consensus 111 ------~l~~Gv~mi~k~l~~~L~k~--Gv~~I~~----~G~~FDP~~HEAv~~~~~~~~~~gtVv~v~qkGY~l 173 (214)
T PRK14163 111 ------ELVGGFKSVAESLETTVAKL--GLQQFGK----EGEPFDPTIHEALMHSYAPDVTETTCVAILQPGYRI 173 (214)
T ss_pred ------hHHHHHHHHHHHHHHHHHHC--CCEEeCC----CCCCCChhHhceeeeecCCCCCcCEEEEEeeCCcCc
Confidence 48999999999999999999 7789998 8999999999999 5689999999999975
No 21
>COG0576 GrpE Molecular chaperone GrpE (heat shock protein) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=7.3e-36 Score=255.95 Aligned_cols=130 Identities=33% Similarity=0.398 Sum_probs=120.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhhHHHHhhcCCcccccCCChhHHh
Q psy2067 79 LKKQIEALNEKNSDLLDKYKRALADGENARQRFNKQLEESKLYGIQSFCKDLLDIADTLSLANESVPKEEVKDSNPHLKS 158 (225)
Q Consensus 79 L~~el~~leee~~elkdk~lR~~AEfEN~RkR~~KE~e~akk~aie~f~kdLLpViDnLERAL~~~~~~~~~~~~~~~~~ 158 (225)
+..+++.|+.++++++++|+|++|||+|||||++|+++++++||+++|+++||||+|||+|||.+.+... +.. ++
T Consensus 41 ~~~~i~~Le~q~~e~~~~~lr~~Ae~eN~rkR~~re~e~~~k~a~e~~~~dlLpviDnlerAl~~~~~~~----d~~-~~ 115 (193)
T COG0576 41 EQQEIAELEAQLEELKDKYLRAQAEFENLRKRTEREREEAKKYAIEKFAKDLLPVIDNLERALEAAEDDK----DPE-KA 115 (193)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc----chH-HH
Confidence 4478999999999999999999999999999999999999999999999999999999999999876542 222 78
Q ss_pred HHHHHHHHHHHHHHHhcccCCCceEeccCCCCCCCCCCccchhhc-------ccCCeeeeeecccchh
Q psy2067 159 LYEGLLMTDGNLKKHAHPVEYPSVVIIPDSIAVMERISLEQSLSI-------FLANFSVEWLQSPLAK 219 (225)
Q Consensus 159 l~~Gvemi~kqL~~vLek~Gvgv~~I~p~~~~~g~~FDP~~heAi-------~~~n~VveV~QkGY~~ 219 (225)
|+.||+||+++|.++|.++ ||+.|.| .|+.|||++|+|| +++|+|++|+|+||..
T Consensus 116 l~~Gvem~~~~l~~~L~k~--Gv~~i~~----~Ge~FDP~~HeAv~~~~~~~~~~~tVv~v~qkGY~l 177 (193)
T COG0576 116 LLEGVEMTLDQLLDALEKL--GVEEIGP----EGEKFDPNLHEAVQRVESEDVEPNTVVEVLQKGYKL 177 (193)
T ss_pred HHHHHHHHHHHHHHHHHHC--CCEEeCC----CCCCCCHHHhhheeeecCCCCCCCeEEEEeecCeee
Confidence 9999999999999999999 7799998 8999999999999 6889999999999975
No 22
>PRK10325 heat shock protein GrpE; Provisional
Probab=100.00 E-value=7.5e-36 Score=256.65 Aligned_cols=131 Identities=21% Similarity=0.270 Sum_probs=113.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhhHHHHhhcCCcccccCCCh
Q psy2067 75 ELEDLKKQIEALNEKNSDLLDKYKRALADGENARQRFNKQLEESKLYGIQSFCKDLLDIADTLSLANESVPKEEVKDSNP 154 (225)
Q Consensus 75 ~i~~L~~el~~leee~~elkdk~lR~~AEfEN~RkR~~KE~e~akk~aie~f~kdLLpViDnLERAL~~~~~~~~~~~~~ 154 (225)
.+..|+.++.+++. +++++|+|++|||+|||||++||++++++||+++|+++||||+|||+||+.+.+.. +.
T Consensus 43 ~~~~l~~~~~e~~~---~~~d~~lR~~Ae~eN~rkR~~ke~~~~~~~a~~~~~~~lLpv~DnlerAl~~~~~~-----~~ 114 (197)
T PRK10325 43 KIANLEAQLAEAQT---RERDGILRVKAEMENLRRRTELDIEKAHKFALEKFINELLPVIDSLDRALEVADKA-----NP 114 (197)
T ss_pred HHHHHHHHHHHHHh---hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHhccccc-----ch
Confidence 44455544444432 25899999999999999999999999999999999999999999999999987532 23
Q ss_pred hHHhHHHHHHHHHHHHHHHhcccCCCceEeccCCCCCCCCCCccchhhc-------ccCCeeeeeecccchh
Q psy2067 155 HLKSLYEGLLMTDGNLKKHAHPVEYPSVVIIPDSIAVMERISLEQSLSI-------FLANFSVEWLQSPLAK 219 (225)
Q Consensus 155 ~~~~l~~Gvemi~kqL~~vLek~Gvgv~~I~p~~~~~g~~FDP~~heAi-------~~~n~VveV~QkGY~~ 219 (225)
..++|+.||+||+++|.++|+++ ||++|+| +|.+|||+.|+|+ +++|+|++|+|+||..
T Consensus 115 ~~~~l~~Gv~m~~~~l~~~L~~~--Gv~~i~~----~G~~FDP~~HEAv~~~~~~~~~~~~Vv~v~qkGY~l 180 (197)
T PRK10325 115 DMSAMVEGIELTLKSMLDVVRKF--GVEVIAE----TNVPLDPNVHQAIAMVESDDVAPGNVLGIMQKGYTL 180 (197)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHC--cCeeeCC----CCCCCChhHhceeeeeCCCCCCcCeEEEEeeCCcEe
Confidence 57899999999999999999999 6689998 8999999999999 5789999999999964
No 23
>PRK14149 heat shock protein GrpE; Provisional
Probab=100.00 E-value=1.4e-35 Score=253.79 Aligned_cols=126 Identities=22% Similarity=0.161 Sum_probs=115.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhhHHHHhhcCCcccccCCChhHHhHH
Q psy2067 81 KQIEALNEKNSDLLDKYKRALADGENARQRFNKQLEESKLYGIQSFCKDLLDIADTLSLANESVPKEEVKDSNPHLKSLY 160 (225)
Q Consensus 81 ~el~~leee~~elkdk~lR~~AEfEN~RkR~~KE~e~akk~aie~f~kdLLpViDnLERAL~~~~~~~~~~~~~~~~~l~ 160 (225)
+.++.+++++++++++|+|++|||+|||||+.||++++++||+++|+++||||+|||+||+.+.+.+ ....+|+
T Consensus 43 ~~~~~l~~e~~elkd~~lR~~AefEN~rKR~~kE~e~~~~~a~~~~~~~LLpVlDnLerAl~~~~~~------~~~~~l~ 116 (191)
T PRK14149 43 EIKEDFELKYKEMHEKYLRVHADFENVKKRLERDKSMALEYAYEKIALDLLPVIDALLGALKSAAEV------DKESALT 116 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHhccccc------cchHHHH
Confidence 4578889999999999999999999999999999999999999999999999999999999987642 3457899
Q ss_pred HHHHHHHHHHHHHhcccCCCceEeccCCCCCCCCCCccchhhc-------ccCCeeeeeecccchh
Q psy2067 161 EGLLMTDGNLKKHAHPVEYPSVVIIPDSIAVMERISLEQSLSI-------FLANFSVEWLQSPLAK 219 (225)
Q Consensus 161 ~Gvemi~kqL~~vLek~Gvgv~~I~p~~~~~g~~FDP~~heAi-------~~~n~VveV~QkGY~~ 219 (225)
+||+||+++|.++|+++ ||++|++ .| +|||+.|+|| .++|+|++|+|+||.+
T Consensus 117 ~Gv~mi~k~l~~vL~k~--GV~~I~~----~G-~FDP~~HEAv~~v~~~~~~~gtVv~V~QkGY~l 175 (191)
T PRK14149 117 KGLELTMEKLHEVLARH--GIEGIEC----LE-EFDPNFHNAIMQVKSEEKENGKIVQVLQQGYKY 175 (191)
T ss_pred HHHHHHHHHHHHHHHHC--CCEEeCC----CC-CCChHHhheeeeecCCCCCcCEEEEEeeCCcEe
Confidence 99999999999999999 6789987 57 5999999999 5689999999999975
No 24
>PRK14156 heat shock protein GrpE; Provisional
Probab=100.00 E-value=2.8e-34 Score=243.28 Aligned_cols=125 Identities=20% Similarity=0.202 Sum_probs=114.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhhHHHHhhcCCcccccCCChhHH
Q psy2067 78 DLKKQIEALNEKNSDLLDKYKRALADGENARQRFNKQLEESKLYGIQSFCKDLLDIADTLSLANESVPKEEVKDSNPHLK 157 (225)
Q Consensus 78 ~L~~el~~leee~~elkdk~lR~~AEfEN~RkR~~KE~e~akk~aie~f~kdLLpViDnLERAL~~~~~~~~~~~~~~~~ 157 (225)
.+.++++.+++++++++++|+|++|||+|||||+.||++++++||.++|+++||||+|||+||+.+... ..
T Consensus 31 ~~~~~l~~l~~e~~elkd~~lR~~AEfeN~rKR~~rE~e~~~~~a~~~~~~~LLpVlDnLerAl~~~~~---------~~ 101 (177)
T PRK14156 31 PEKSELELANERADEFENKYLRAHAEMQNIQRRANEERQQLQRYRSQDLAKAILPSLDNLERALAVEGL---------TD 101 (177)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHhCccc---------ch
Confidence 367888999999999999999999999999999999999999999999999999999999999987542 24
Q ss_pred hHHHHHHHHHHHHHHHhcccCCCceEeccCCCCCCCCCCccchhhc--------ccCCeeeeeecccchh
Q psy2067 158 SLYEGLLMTDGNLKKHAHPVEYPSVVIIPDSIAVMERISLEQSLSI--------FLANFSVEWLQSPLAK 219 (225)
Q Consensus 158 ~l~~Gvemi~kqL~~vLek~Gvgv~~I~p~~~~~g~~FDP~~heAi--------~~~n~VveV~QkGY~~ 219 (225)
+++.||+||+++|.++|+++ ||++|++ . +|||+.|+|+ .++|+|++|+|+||..
T Consensus 102 ~l~~Gv~mi~k~l~~~L~~~--GV~~i~~----~--~FDP~~HEAv~~~~~~~~~~~gtVv~V~qkGY~l 163 (177)
T PRK14156 102 DVKKGLEMVQESLIQALKEE--GVEEVAV----D--SFDHNLHMAVQTLPADDEHPADSIAQVFQKGYKL 163 (177)
T ss_pred hHHHHHHHHHHHHHHHHHHC--CCeecCC----C--CCChhHhhcceeecCCCCCCcCEEEEEeeCCcEe
Confidence 68999999999999999999 6688876 3 9999999999 3579999999999974
No 25
>PRK14157 heat shock protein GrpE; Provisional
Probab=100.00 E-value=5.3e-34 Score=249.22 Aligned_cols=123 Identities=14% Similarity=0.088 Sum_probs=114.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhhHHHHhhcCCcccccCCChhHH
Q psy2067 78 DLKKQIEALNEKNSDLLDKYKRALADGENARQRFNKQLEESKLYGIQSFCKDLLDIADTLSLANESVPKEEVKDSNPHLK 157 (225)
Q Consensus 78 ~L~~el~~leee~~elkdk~lR~~AEfEN~RkR~~KE~e~akk~aie~f~kdLLpViDnLERAL~~~~~~~~~~~~~~~~ 157 (225)
.+..++..+++++.+++++|+|++|||+|||||++||++++++||+++|+++||||+|||+||+.+..
T Consensus 81 ~~~~~l~~le~e~~e~kd~llR~~AEfeNyRKR~~rE~e~~~~~a~~~~~~dLLpvlDnLeRAl~~~~------------ 148 (227)
T PRK14157 81 DTLTPLGQAKKEAAEYLEALQRERAEFINYRNRTQKEQDRFRQHGIIDVLTALLPALDDIDRIREHSE------------ 148 (227)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHhccc------------
Confidence 57788999999999999999999999999999999999999999999999999999999999998753
Q ss_pred hHHHHHHHHHHHHHHHhcccCCCceEeccCCCCCCCCCCccchhhc-------ccCCeeeeeecccchh
Q psy2067 158 SLYEGLLMTDGNLKKHAHPVEYPSVVIIPDSIAVMERISLEQSLSI-------FLANFSVEWLQSPLAK 219 (225)
Q Consensus 158 ~l~~Gvemi~kqL~~vLek~Gvgv~~I~p~~~~~g~~FDP~~heAi-------~~~n~VveV~QkGY~~ 219 (225)
+..||+||+++|.++|+++ ||++|+| .|.+|||++|+|| .++|+|++|+|+||..
T Consensus 149 -~~~~~~~i~k~l~~vL~k~--GVe~I~~----~Ge~FDP~~HEAV~~~~~~~~~~gtVi~V~QkGY~l 210 (227)
T PRK14157 149 -MDDSFKAVAAKIDKAFEKF--GVEKFGE----KGEDFDPTKHDAILHKPDPDAEKETVDTVVEAGYRI 210 (227)
T ss_pred -cchHHHHHHHHHHHHHHHC--CCEEeCC----CCCCCChhhhceeeeecCCCCCcCEEEEEeeCCcee
Confidence 3468999999999999999 7789998 8999999999999 4689999999999975
No 26
>PRK14142 heat shock protein GrpE; Provisional
Probab=99.98 E-value=3.2e-32 Score=237.21 Aligned_cols=119 Identities=16% Similarity=0.059 Sum_probs=106.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhhHHHHhhcCCcccccCCChhHHhHHHH
Q psy2067 83 IEALNEKNSDLLDKYKRALADGENARQRFNKQLEESKLYGIQSFCKDLLDIADTLSLANESVPKEEVKDSNPHLKSLYEG 162 (225)
Q Consensus 83 l~~leee~~elkdk~lR~~AEfEN~RkR~~KE~e~akk~aie~f~kdLLpViDnLERAL~~~~~~~~~~~~~~~~~l~~G 162 (225)
.+.+.+++++++++|+|++|||+|||||++||++++++||+++|+++||||+|||+|||.+.... . .+
T Consensus 42 ~~~~~~e~~elkdk~lR~~AEfEN~RKR~erE~e~~~~~A~e~~~kdLLpVlDnLERAL~~~~~~------~------~~ 109 (223)
T PRK14142 42 AAHTEDKVAELTADLQRVQADFANYRKRALRDQQAAADRAKASVVSQLLGVLDDLERARKHGDLE------S------GP 109 (223)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHhHHHHHHhccccc------c------HH
Confidence 45567778899999999999999999999999999999999999999999999999999886532 0 35
Q ss_pred HHHHHHHHHHHhcccCCCceEeccCCCCCCCCCCccchhhc-------c-cCCeeeeeecccchh
Q psy2067 163 LLMTDGNLKKHAHPVEYPSVVIIPDSIAVMERISLEQSLSI-------F-LANFSVEWLQSPLAK 219 (225)
Q Consensus 163 vemi~kqL~~vLek~Gvgv~~I~p~~~~~g~~FDP~~heAi-------~-~~n~VveV~QkGY~~ 219 (225)
|+||+++|+++|+++ ||++|++ +|++|||++|+|| . +.|+|++|+|+||.+
T Consensus 110 v~~I~kqL~~iLek~--GVe~I~~----~Ge~FDP~~HEAv~~ve~~e~~~~~tVveV~QkGYkL 168 (223)
T PRK14142 110 LKSVADKLDSALTGL--GLVAFGA----EGEDFDPVLHEAVQHEGDGGQGSKPVIGTVMRQGYQL 168 (223)
T ss_pred HHHHHHHHHHHHHHC--CCEEeCC----CCCCCChhhhceeeeecCCCCCCCCEEEEEecCCcEe
Confidence 899999999999999 7789988 8999999999999 1 247999999999975
No 27
>PRK14164 heat shock protein GrpE; Provisional
Probab=99.97 E-value=8.2e-32 Score=234.62 Aligned_cols=120 Identities=16% Similarity=0.084 Sum_probs=109.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhhHHHHhhcCCcccccCCChhHHhHH
Q psy2067 81 KQIEALNEKNSDLLDKYKRALADGENARQRFNKQLEESKLYGIQSFCKDLLDIADTLSLANESVPKEEVKDSNPHLKSLY 160 (225)
Q Consensus 81 ~el~~leee~~elkdk~lR~~AEfEN~RkR~~KE~e~akk~aie~f~kdLLpViDnLERAL~~~~~~~~~~~~~~~~~l~ 160 (225)
.++..+++++++++++|+|++|||+|||||++||++++++||+++|+++||||+|||+||+.+... .
T Consensus 77 ~~~~~le~el~el~d~llR~~AE~eN~RkR~~rE~e~~~~~a~~~~~~~LLpVlDnLerAl~~~~~-------------~ 143 (218)
T PRK14164 77 GEASTVEAQLAERTEDLQRVTAEYANYRRRTERERQAIIETAKAGVATDLLPILDDLDLAEQHGDL-------------N 143 (218)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHhcccc-------------c
Confidence 668888999999999999999999999999999999999999999999999999999999987542 2
Q ss_pred HH-HHHHHHHHHHHhcccCCCceEeccCCCCCCCCCCccchhhc-----ccCCeeeeeecccchh
Q psy2067 161 EG-LLMTDGNLKKHAHPVEYPSVVIIPDSIAVMERISLEQSLSI-----FLANFSVEWLQSPLAK 219 (225)
Q Consensus 161 ~G-vemi~kqL~~vLek~Gvgv~~I~p~~~~~g~~FDP~~heAi-----~~~n~VveV~QkGY~~ 219 (225)
.| ++||+++|.++|+++ ||++|++ +|++|||++|+|| -+.++|++|+|+||..
T Consensus 144 ~g~l~~i~~~l~~vL~k~--Gve~I~~----~Ge~FDP~~HEAV~~~~~~~~~~V~~V~qkGY~l 202 (218)
T PRK14164 144 EGPLKAFSDKLTNVLAGL--KVEKFGE----EGDAFDPEIHEAVQDLSSGDEKVLGTVLRKGYRM 202 (218)
T ss_pred ccHHHHHHHHHHHHHHHC--CCEEeCC----CCCCCChhHhheeeeecCCCCCEeeEEeeCCcEE
Confidence 34 789999999999999 7789998 8999999999999 2368999999999964
No 28
>KOG3003|consensus
Probab=99.97 E-value=5.3e-31 Score=229.87 Aligned_cols=138 Identities=34% Similarity=0.452 Sum_probs=124.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhhHHHHhhcCCcc-cccCC
Q psy2067 74 EELEDLKKQIEALNEKNSDLLDKYKRALADGENARQRFNKQLEESKLYGIQSFCKDLLDIADTLSLANESVPKE-EVKDS 152 (225)
Q Consensus 74 ~~i~~L~~el~~leee~~elkdk~lR~~AEfEN~RkR~~KE~e~akk~aie~f~kdLLpViDnLERAL~~~~~~-~~~~~ 152 (225)
.+++.|.+.+...+++ .+|+|+|+|+.||++|+|+|+.|.+++++.||+++|++|||.|.|||++|+++++.+ +...+
T Consensus 71 ae~~~l~~~~k~~~e~-~eLkdk~~rs~Ad~eNlr~R~~r~~edak~FaiQ~f~kdLleVaD~Le~a~~~v~ee~~~~d~ 149 (236)
T KOG3003|consen 71 AEKALLEKVLKLEKEE-QELKDKYLRSLAECENLRDRTIRDVEDAKKFAIQSFCKDLLEVADNLEKATECVKEESEKEDQ 149 (236)
T ss_pred HHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhccccc
Confidence 3566666666555555 999999999999999999999999999999999999999999999999999999876 22345
Q ss_pred ChhHHhHHHHHHHHHHHHHHHhcccCCCceEeccCCCCCCCCCCccchhhc-------ccCCeeeeeecccch
Q psy2067 153 NPHLKSLYEGLLMTDGNLKKHAHPVEYPSVVIIPDSIAVMERISLEQSLSI-------FLANFSVEWLQSPLA 218 (225)
Q Consensus 153 ~~~~~~l~~Gvemi~kqL~~vLek~Gvgv~~I~p~~~~~g~~FDP~~heAi-------~~~n~VveV~QkGY~ 218 (225)
+..++.+++|+.||+++|.++|.+| |+++.+| +|++||||+|+|+ .++|||..|.++||.
T Consensus 150 ~~~L~~l~eGl~mte~ql~~vf~Kh--GLekldP----igekFDPn~HEAvfq~p~~~k~pgtV~~v~k~Gy~ 216 (236)
T KOG3003|consen 150 KKDLKDLFEGLSMTEAQLKEVFAKH--GLEKLDP----IGEKFDPNEHEAVFQVPDAAKEPGTVALVTKKGYK 216 (236)
T ss_pred chHHHHHHhHHHHHHHHHHHHHHHc--CceecCC----CCCCCCcchhheeEeccccCCCCCeEEEEeccCcc
Confidence 7789999999999999999999999 6699999 9999999999999 578999999999996
No 29
>cd00446 GrpE GrpE is the adenine nucleotide exchange factor of DnaK (Hsp70)-type ATPases. The GrpE dimer binds to the ATPase domain of Hsp70 catalyzing the dissociation of ADP, which enables rebinding of ATP, one step in the Hsp70 reaction cycle in protein folding. In eukaryotes, only the mitochondrial Hsp70, not the cytosolic form, is GrpE dependent.
Probab=99.97 E-value=5.3e-30 Score=207.80 Aligned_cols=117 Identities=35% Similarity=0.357 Sum_probs=108.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhhHHHHhhcCCcccccCCChhHHhHHHHHHHHHHHH
Q psy2067 91 SDLLDKYKRALADGENARQRFNKQLEESKLYGIQSFCKDLLDIADTLSLANESVPKEEVKDSNPHLKSLYEGLLMTDGNL 170 (225)
Q Consensus 91 ~elkdk~lR~~AEfEN~RkR~~KE~e~akk~aie~f~kdLLpViDnLERAL~~~~~~~~~~~~~~~~~l~~Gvemi~kqL 170 (225)
++++++++|++|||+|||+|+.++++++++||.++|+++||||+|||+||+.+...+ +....+.+|++||+++|
T Consensus 2 ~~~~~~~~r~~ae~~N~rkr~~~e~~~~~~~~~~~~~~~ll~v~D~le~a~~~~~~~------~~~~~~~~g~~~i~~~l 75 (137)
T cd00446 2 EELKDKLLRALAEFENYRKRTEREREEARKYAIEKFAKDLLPVLDNLERALEAAKKE------EELKNLVEGVEMTLKQL 75 (137)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc------chHHHHHHHHHHHHHHH
Confidence 468999999999999999999999999999999999999999999999999987642 35689999999999999
Q ss_pred HHHhcccCCCceEeccCCCCCCCCCCccchhhc-------ccCCeeeeeecccchh
Q psy2067 171 KKHAHPVEYPSVVIIPDSIAVMERISLEQSLSI-------FLANFSVEWLQSPLAK 219 (225)
Q Consensus 171 ~~vLek~Gvgv~~I~p~~~~~g~~FDP~~heAi-------~~~n~VveV~QkGY~~ 219 (225)
.++|.++ ||++|.| .|.+|||+.|+|+ .++|+|++|+|+||..
T Consensus 76 ~~~L~~~--Gv~~i~~----~g~~FDp~~Heav~~~~~~~~~~~~I~~v~~~GY~~ 125 (137)
T cd00446 76 LDVLEKH--GVEKIEP----EGEPFDPNLHEAVMQVPSPDVEPGTVVEVLQKGYKL 125 (137)
T ss_pred HHHHHHC--CCEEECC----CCCCCCHHHheeeeeecCCCCCcCEEEEEeecCeEE
Confidence 9999999 7789998 7899999999999 5789999999999974
No 30
>PF01025 GrpE: GrpE; InterPro: IPR000740 Molecular chaperones are a diverse family of proteins that function to protect proteins in the intracellular milieu from irreversible aggregation during synthesis and in times of cellular stress. The bacterial molecular chaperone DnaK is an enzyme that couples cycles of ATP binding, hydrolysis, and ADP release by an N-terminal ATP-hydrolysing domain to cycles of sequestration and release of unfolded proteins by a C-terminal substrate binding domain. In prokaryotes the grpE protein. Dimeric GrpE is the co-chaperone for DnaK, and acts as a nucleotide exchange factor, stimulating the rate of ADP release 5000-fold []. DnaK is itself a weak ATPase; ATP hydrolysis by DnaK is stimulated by its interaction with another co-chaperone, DnaJ. Thus the co-chaperones DnaJ and GrpE are capable of tightly regulating the nucleotide-bound and substrate-bound state of DnaK in ways that are necessary for the normal housekeeping functions and stress-related functions of the DnaK molecular chaperone cycle. The X-ray crystal structure of GrpE in complex with the ATPase domain of DnaK revealed that GrpE is an asymmetric homodimer, bent in a manner that favours extensive contacts with only one DnaKATPase monomer []. GrpE does not actively compete for the atomic positions occupied by the nucleotide. GrpE and ADP mutually reduce one another's affinity for DnaK 200-fold, and ATP instantly dissociates GrpE from DnaK.; GO: 0000774 adenyl-nucleotide exchange factor activity, 0042803 protein homodimerization activity, 0051087 chaperone binding, 0006457 protein folding; PDB: 3A6M_A 4ANI_A 1DKG_B.
Probab=99.96 E-value=2.6e-29 Score=207.61 Aligned_cols=137 Identities=30% Similarity=0.342 Sum_probs=117.7
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhhHHHHhhcCCccccc
Q psy2067 71 KIKEELEDLKKQIEALNEKNSDLLDKYKRALADGENARQRFNKQLEESKLYGIQSFCKDLLDIADTLSLANESVPKEEVK 150 (225)
Q Consensus 71 ~~~~~i~~L~~el~~leee~~elkdk~lR~~AEfEN~RkR~~KE~e~akk~aie~f~kdLLpViDnLERAL~~~~~~~~~ 150 (225)
....++..++.+++.++++++++++++.|+.|+|+|||+|+.++.+++++++.++|+++||||+|+|+||+.+.+.
T Consensus 8 ~~~~~~~~~~~~l~~l~~~~~~l~~~~~r~~ae~en~~~r~~~e~~~~~~~~~~~~~~~ll~v~D~l~~a~~~~~~---- 83 (165)
T PF01025_consen 8 EEDEEIEELEEELEELEKEIEELKERLLRLQAEFENYRKRLEKEKEEAKKYALEKFLKDLLPVLDNLERALEAAKS---- 83 (165)
T ss_dssp CCHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCC-SH----
T ss_pred chhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc----
Confidence 3445667777888889999999999999999999999999999999999999999999999999999999998752
Q ss_pred CCChhHHhHHHHHHHHHHHHHHHhcccCCCceEeccCCCCCCCCCCccchhhc-------ccCCeeeeeecccchh
Q psy2067 151 DSNPHLKSLYEGLLMTDGNLKKHAHPVEYPSVVIIPDSIAVMERISLEQSLSI-------FLANFSVEWLQSPLAK 219 (225)
Q Consensus 151 ~~~~~~~~l~~Gvemi~kqL~~vLek~Gvgv~~I~p~~~~~g~~FDP~~heAi-------~~~n~VveV~QkGY~~ 219 (225)
++...++..||.||+++|.++|+++ ||++|.| .|.+|||+.|+|+ .++|+|++|+|+||..
T Consensus 84 --~~~~~~~~~g~~~~~~~l~~~L~~~--Gv~~i~~----~G~~FDp~~heav~~~~~~~~~~~~I~~v~~~GY~~ 151 (165)
T PF01025_consen 84 --NEEEESLLEGLEMILKQLEDILEKN--GVEEIEP----VGEPFDPNLHEAVETVPDPDKEPGTIVEVVRPGYRL 151 (165)
T ss_dssp --HCTCHHHHHHHHHHHHHHHHHHHTT--TEEEE------TSSB--TTTEEEEEEECSSSS-CTBEEEECC-EEEE
T ss_pred --cchHHHHHHHHHHHHHHHHHHHHHC--CCEecCC----CCCCCCHHHheeheecCcCCCCcCeEEEEEecCEEE
Confidence 2245689999999999999999999 7799999 7999999999999 5689999999999963
No 31
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=91.59 E-value=0.41 Score=37.85 Aligned_cols=45 Identities=22% Similarity=0.445 Sum_probs=37.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2067 72 IKEELEDLKKQIEALNEKNSDLLDKYKRALADGENARQRFNKQLE 116 (225)
Q Consensus 72 ~~~~i~~L~~el~~leee~~elkdk~lR~~AEfEN~RkR~~KE~e 116 (225)
++..+..+-+++..|+.++.++-+...++.-|.+++|+|+.+...
T Consensus 13 le~~l~~l~~~~~~LK~~~~~l~EEN~~L~~EN~~Lr~~l~~~~~ 57 (107)
T PF06156_consen 13 LEQQLGQLLEELEELKKQLQELLEENARLRIENEHLRERLEELEQ 57 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 455667777888888888888888888999999999999987665
No 32
>PRK13169 DNA replication intiation control protein YabA; Reviewed
Probab=87.66 E-value=1.5 Score=34.99 Aligned_cols=43 Identities=21% Similarity=0.395 Sum_probs=37.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2067 72 IKEELEDLKKQIEALNEKNSDLLDKYKRALADGENARQRFNKQ 114 (225)
Q Consensus 72 ~~~~i~~L~~el~~leee~~elkdk~lR~~AEfEN~RkR~~KE 114 (225)
++..+..+-.++..|+.++.++-+...++.-|-+++|+|+.+.
T Consensus 13 le~~l~~l~~el~~LK~~~~el~EEN~~L~iEN~~Lr~~l~~~ 55 (110)
T PRK13169 13 LEQNLGVLLKELGALKKQLAELLEENTALRLENDKLRERLEEL 55 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4556677888888999999999999999999999999999974
No 33
>COG4467 Regulator of replication initiation timing [Replication, recombination, and repair]
Probab=84.72 E-value=1.6 Score=34.91 Aligned_cols=68 Identities=16% Similarity=0.202 Sum_probs=50.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHhhhHHhhHHHHh
Q psy2067 72 IKEELEDLKKQIEALNEKNSDLLDKYKRALADGENARQRFNKQLEESKLYGIQ---SFCKDLLDIADTLSLAN 141 (225)
Q Consensus 72 ~~~~i~~L~~el~~leee~~elkdk~lR~~AEfEN~RkR~~KE~e~akk~aie---~f~kdLLpViDnLERAL 141 (225)
++..+-.+-+++..+++.+.++-+...+++-|.+++|+|+.. ....+.+.. .-.++..+..|||.|--
T Consensus 13 le~~l~~l~~el~~lK~~l~~lvEEN~~L~lENe~LR~RL~~--~~~e~~~~~k~~~~~~~~~~~~dnL~~lY 83 (114)
T COG4467 13 LEEQLGVLLAELGGLKQHLGSLVEENTALRLENEKLRERLGE--PTLEKTAVKKEKPAVKKKGEGYDNLARLY 83 (114)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhHHHHHHHhCC--ccccchhhhcccccccccCCCchhHHHHH
Confidence 455667778888889999999999999999999999999976 222222222 23455788888888764
No 34
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=83.10 E-value=20 Score=32.25 Aligned_cols=19 Identities=5% Similarity=-0.067 Sum_probs=10.8
Q ss_pred HHHHHHhccc-CCCceEecc
Q psy2067 168 GNLKKHAHPV-EYPSVVIIP 186 (225)
Q Consensus 168 kqL~~vLek~-Gvgv~~I~p 186 (225)
..+..+.... |+||+++..
T Consensus 178 ~~yeri~~~~kg~gvvpl~g 197 (239)
T COG1579 178 SEYERIRKNKKGVGVVPLEG 197 (239)
T ss_pred HHHHHHHhcCCCceEEeecC
Confidence 3344444444 778788753
No 35
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=77.72 E-value=8.6 Score=28.26 Aligned_cols=43 Identities=19% Similarity=0.384 Sum_probs=33.4
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2067 71 KIKEELEDLKKQIEALNEKNSDLLDKYKRALADGENARQRFNK 113 (225)
Q Consensus 71 ~~~~~i~~L~~el~~leee~~elkdk~lR~~AEfEN~RkR~~K 113 (225)
+....|..|++.+..++.++..++.+...+.++.++++.|+.+
T Consensus 30 ~~~~~IKKLr~~~~e~e~~~~~l~~~~~~~e~~~~~l~~~l~~ 72 (74)
T PF12329_consen 30 KLNNTIKKLRAKIKELEKQIKELKKKLEELEKELESLEERLKR 72 (74)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 3445677788888888888888888888888888888887753
No 36
>cd07627 BAR_Vps5p The Bin/Amphiphysin/Rvs (BAR) domain of yeast Sorting Nexin Vps5p. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. Vsp5p is the yeast counterpart of human SNX1 and is part of the retromer complex, which functions in the endosome-to-Golgi retrieval of vacuolar protein sorting receptor Vps10p, the Golgi-resident membrane protein A-ALP, and endopeptidase Kex2. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in
Probab=73.16 E-value=30 Score=29.84 Aligned_cols=54 Identities=9% Similarity=0.083 Sum_probs=41.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHH
Q psy2067 81 KQIEALNEKNSDLLDKYKRALADGENARQRFNKQLEESKLYGIQSFCKDLLDIA 134 (225)
Q Consensus 81 ~el~~leee~~elkdk~lR~~AEfEN~RkR~~KE~e~akk~aie~f~kdLLpVi 134 (225)
.++..++.++.++..+...+..+|+.+..++.+|+.....--+..|-..|..-+
T Consensus 143 ~K~~~~~~ei~~~e~~~~~a~~~~e~is~~~k~El~rF~~~r~~dfk~~l~~~~ 196 (216)
T cd07627 143 EKLNSLLSELEEAERRASELKKEFEEVSELIKSELERFERERVEDFRNSVEIYL 196 (216)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567777888888888888999999999999999998887666655544444333
No 37
>PTZ00464 SNF-7-like protein; Provisional
Probab=71.93 E-value=49 Score=29.04 Aligned_cols=98 Identities=13% Similarity=0.093 Sum_probs=44.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhhHHHHhhcCCccccc
Q psy2067 72 IKEELEDLKKQIEALNEKNSDLLDKYKRALADG-ENARQRFNKQLEESKLYGIQSFCKDLLDIADTLSLANESVPKEEVK 150 (225)
Q Consensus 72 ~~~~i~~L~~el~~leee~~elkdk~lR~~AEf-EN~RkR~~KE~e~akk~aie~f~kdLLpViDnLERAL~~~~~~~~~ 150 (225)
+...+..|..++..++.++..++.......--- ...|+|..+-.. ++--.++.+..+....+||+.....+...
T Consensus 23 l~~r~~~l~kKi~~ld~E~~~ak~~~k~~~~~~~~~~K~~Al~~LK--~KK~~E~ql~~l~~q~~nleq~~~~ie~a--- 97 (211)
T PTZ00464 23 IGGRSEVVDARINKIDAELMKLKEQIQRTRGMTQSRHKQRAMQLLQ--QKRMYQNQQDMMMQQQFNMDQLQFTTESV--- 97 (211)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHH---
Confidence 334444455555555555444444443221111 112333332221 22234444566666666666665444321
Q ss_pred CCChhHHhHHHHHHHHHHHHHHHhccc
Q psy2067 151 DSNPHLKSLYEGLLMTDGNLKKHAHPV 177 (225)
Q Consensus 151 ~~~~~~~~l~~Gvemi~kqL~~vLek~ 177 (225)
..-..++.+++...+.|.++....
T Consensus 98 ---~~~~~vv~amk~g~kaLK~~~k~i 121 (211)
T PTZ00464 98 ---KDTKVQVDAMKQAAKTLKKQFKKL 121 (211)
T ss_pred ---HHHHHHHHHHHHHHHHHHHHHhcC
Confidence 112345566666666666665554
No 38
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=71.40 E-value=57 Score=26.93 Aligned_cols=73 Identities=18% Similarity=0.215 Sum_probs=51.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhhHHHHhhcCC
Q psy2067 73 KEELEDLKKQIEALNEKNSDLLDKYKRALADGENARQRFNKQLEESKLYGIQSFCKDLLDIADTLSLANESVP 145 (225)
Q Consensus 73 ~~~i~~L~~el~~leee~~elkdk~lR~~AEfEN~RkR~~KE~e~akk~aie~f~kdLLpViDnLERAL~~~~ 145 (225)
.+++..+..++..+++++.+++..+..+.+++.+++....-+--....-.+..=+..|-.=+..|..+...++
T Consensus 71 ~eel~~ld~ei~~L~~el~~l~~~~k~l~~eL~~L~~~~t~~el~~~i~~l~~e~~~l~~kL~~l~~~~~~vs 143 (169)
T PF07106_consen 71 PEELAELDAEIKELREELAELKKEVKSLEAELASLSSEPTNEELREEIEELEEEIEELEEKLEKLRSGSKPVS 143 (169)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCC
Confidence 3577888888888999999998888889999999888774444444444444456666666666666544444
No 39
>cd07664 BAR_SNX2 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. SNX2 is a component of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi. The retromer consists of a cargo-recognition subcomplex and a subcomplex formed by a dimer of sorting nexins (SNX1 and/or SNX2), which ensures effcient cargo sorting by facilitating proper membrane localization
Probab=70.25 E-value=36 Score=30.23 Aligned_cols=53 Identities=9% Similarity=0.156 Sum_probs=41.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH
Q psy2067 81 KQIEALNEKNSDLLDKYKRALADGENARQRFNKQLEESKLYGIQSFCKDLLDI 133 (225)
Q Consensus 81 ~el~~leee~~elkdk~lR~~AEfEN~RkR~~KE~e~akk~aie~f~kdLLpV 133 (225)
.++..++.++.+++.+...+..+|+.+.+++.+|+.....--+..|-..|..-
T Consensus 159 dK~~~~~~ev~~~e~~~~~a~~~fe~Is~~~k~El~rFe~er~~dfk~~l~~f 211 (234)
T cd07664 159 DKLQQAKDEIKEWEAKVQQGERDFEQISKTIRKEVGRFEKERVKDFKTVIIKY 211 (234)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667788888888899999999999999999999988766655555444433
No 40
>cd07623 BAR_SNX1_2 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexins 1 and 2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. This subfamily consists of SNX1, SNX2, and similar proteins. SNX1 and SNX2 are components of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi. The retromer consists of a cargo-recognition subcomplex and a subcomplex formed by a dimer of sorting nexins (SNX1 and/or SNX2), wh
Probab=67.30 E-value=48 Score=28.86 Aligned_cols=50 Identities=12% Similarity=0.219 Sum_probs=39.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy2067 82 QIEALNEKNSDLLDKYKRALADGENARQRFNKQLEESKLYGIQSFCKDLL 131 (225)
Q Consensus 82 el~~leee~~elkdk~lR~~AEfEN~RkR~~KE~e~akk~aie~f~kdLL 131 (225)
++..++.++.++..+...+..+|+++..++.+|+......-+..|=..|.
T Consensus 150 K~~~~~~ev~~~e~~~~~a~~~fe~is~~~k~El~rF~~erv~dfk~~l~ 199 (224)
T cd07623 150 KLDQAQQEIKEWEAKVDRGQKEFEEISKTIKKEIERFEKNRVKDFKDIII 199 (224)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57778888888888889999999999999999999887665555544443
No 41
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=66.14 E-value=36 Score=24.99 Aligned_cols=26 Identities=23% Similarity=0.390 Sum_probs=11.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2067 73 KEELEDLKKQIEALNEKNSDLLDKYK 98 (225)
Q Consensus 73 ~~~i~~L~~el~~leee~~elkdk~l 98 (225)
+.++..+-..+..|+.++++++.+..
T Consensus 10 E~ki~~aveti~~Lq~e~eeLke~n~ 35 (72)
T PF06005_consen 10 EEKIQQAVETIALLQMENEELKEKNN 35 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444433
No 42
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=64.35 E-value=26 Score=31.72 Aligned_cols=68 Identities=22% Similarity=0.314 Sum_probs=47.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhhHHHHh
Q psy2067 72 IKEELEDLKKQIEALNEKNSDLLDKYKRALADGENARQRFNKQLEESKLYGIQSFCKDLLDIADTLSLAN 141 (225)
Q Consensus 72 ~~~~i~~L~~el~~leee~~elkdk~lR~~AEfEN~RkR~~KE~e~akk~aie~f~kdLLpViDnLERAL 141 (225)
+.+..+.++.+++++.++..+|.+.+-++.++++-.+.|+++=.- -+.-++..++.++.=+-+|..-+
T Consensus 133 ~ke~~ee~kekl~E~~~EkeeL~~eleele~e~ee~~erlk~le~--E~s~LeE~~~~l~~ev~~L~~r~ 200 (290)
T COG4026 133 LKEDYEELKEKLEELQKEKEELLKELEELEAEYEEVQERLKRLEV--ENSRLEEMLKKLPGEVYDLKKRW 200 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHhchhHHHHHHHHH
Confidence 345677788888889999999999999999999999988865322 22334555555554555555443
No 43
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=63.76 E-value=90 Score=28.09 Aligned_cols=66 Identities=23% Similarity=0.190 Sum_probs=47.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhhH
Q psy2067 72 IKEELEDLKKQIEALNEKNSDLLDKYKRALADGENARQRFNKQLEESKLYGIQSFCKDLLDIADTL 137 (225)
Q Consensus 72 ~~~~i~~L~~el~~leee~~elkdk~lR~~AEfEN~RkR~~KE~e~akk~aie~f~kdLLpViDnL 137 (225)
...+.+.++..+..++.+++++++++.+...|..-+|.|..+-......---++-..+|-.=++.+
T Consensus 36 ~~~e~e~~~~~~~~~~~e~e~le~qv~~~e~ei~~~r~r~~~~e~kl~~v~~~~e~~aL~~E~~~a 101 (239)
T COG1579 36 AKAELEALNKALEALEIELEDLENQVSQLESEIQEIRERIKRAEEKLSAVKDERELRALNIEIQIA 101 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHH
Confidence 345667777888888899999999999999999999999988776664333344444444444433
No 44
>PF09325 Vps5: Vps5 C terminal like; InterPro: IPR015404 Vps5 is a sorting nexin that functions in membrane trafficking. This is the C-terminal dimerisation domain [].
Probab=61.97 E-value=68 Score=27.23 Aligned_cols=55 Identities=16% Similarity=0.216 Sum_probs=37.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHh
Q psy2067 81 KQIEALNEKNSDLLDKYKRALADGENARQRFNKQLEESKLYGIQSFCKDLLDIAD 135 (225)
Q Consensus 81 ~el~~leee~~elkdk~lR~~AEfEN~RkR~~KE~e~akk~aie~f~kdLLpViD 135 (225)
.++..++.++.+++.++..+..+|+.+-+++.+|+++..+.=...|-.-|+.-++
T Consensus 163 ~k~~~~~~ei~~~~~~~~~~~~~~~~is~~~k~E~~rf~~~k~~d~k~~l~~~~~ 217 (236)
T PF09325_consen 163 DKVEQAENEIEEAERRVEQAKDEFEEISENIKKELERFEKEKVKDFKSMLEEYAE 217 (236)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555666667777777777778888888888888877776666655555544443
No 45
>PRK00846 hypothetical protein; Provisional
Probab=59.94 E-value=71 Score=23.91 Aligned_cols=51 Identities=16% Similarity=0.250 Sum_probs=41.8
Q ss_pred CcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2067 69 DPKIKEELEDLKKQIEALNEKNSDLLDKYKRALADGENARQRFNKQLEESK 119 (225)
Q Consensus 69 ~~~~~~~i~~L~~el~~leee~~elkdk~lR~~AEfEN~RkR~~KE~e~ak 119 (225)
|..++.++..|+.+++-.+.-+++|.+-+.+.+..++.+++++..=.++.+
T Consensus 8 ~~~le~Ri~~LE~rlAfQe~tIe~LN~~v~~qq~~I~~L~~ql~~L~~rL~ 58 (77)
T PRK00846 8 DQALEARLVELETRLSFQEQALTELSEALADARLTGARNAELIRHLLEDLG 58 (77)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456778899999999999999999999999999999888888776555544
No 46
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=59.77 E-value=43 Score=23.58 Aligned_cols=32 Identities=16% Similarity=0.198 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2067 76 LEDLKKQIEALNEKNSDLLDKYKRALADGENA 107 (225)
Q Consensus 76 i~~L~~el~~leee~~elkdk~lR~~AEfEN~ 107 (225)
+..++.++..++.++++++.+...+.++.+++
T Consensus 19 ~~~~~~ei~~l~~~i~~l~~e~~~L~~ei~~l 50 (80)
T PF04977_consen 19 YYQLNQEIAELQKEIEELKKENEELKEEIERL 50 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44455566666666666666555555555555
No 47
>PF10883 DUF2681: Protein of unknown function (DUF2681); InterPro: IPR020274 This entry contains membrane proteins with no known function.
Probab=58.72 E-value=50 Score=25.31 Aligned_cols=38 Identities=26% Similarity=0.254 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2067 77 EDLKKQIEALNEKNSDLLDKYKRALADGENARQRFNKQ 114 (225)
Q Consensus 77 ~~L~~el~~leee~~elkdk~lR~~AEfEN~RkR~~KE 114 (225)
..++.+++.|.++.+.++-.-.-+.++..||+-|.+-|
T Consensus 26 ~ka~~~~~kL~~en~qlk~Ek~~~~~qvkn~~vrqkne 63 (87)
T PF10883_consen 26 KKAKKQNAKLQKENEQLKTEKAVAETQVKNAKVRQKNE 63 (87)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 44555566677777777777777888999998886554
No 48
>PRK14160 heat shock protein GrpE; Provisional
Probab=58.54 E-value=1.1e+02 Score=27.00 Aligned_cols=49 Identities=16% Similarity=0.178 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2067 75 ELEDLKKQIEALNEKNSDLLDKYKRALADGENARQRFNKQLEESKLYGIQSFC 127 (225)
Q Consensus 75 ~i~~L~~el~~leee~~elkdk~lR~~AEfEN~RkR~~KE~e~akk~aie~f~ 127 (225)
.+..++.++..+++++..++.++ +++.+-..|+..+.++.++......-
T Consensus 55 ~~~~l~~e~~~l~~~l~~l~~e~----~elkd~~lR~~AefeN~RKR~~kE~e 103 (211)
T PRK14160 55 KIEELKDENNKLKEENKKLENEL----EALKDRLLRTVAEYDNYRKRTAKEKE 103 (211)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444445555554444433322 33444445556666666655544433
No 49
>PF09006 Surfac_D-trimer: Lung surfactant protein D coiled-coil trimerisation; InterPro: IPR015097 This domain is found in the SFTPD family, which includes lung surfactant protein D (SFTPD), conglutinin, collectin-43 and collectin-46. It forms a triple-helical parallel coiled coil, and mediates trimerisation of the protein []. ; PDB: 4DN8_A 3G84_A 2RIE_C 3IKR_B 1B08_A 2GGX_B 2OS9_C 2ORK_B 1PWB_A 2RIA_C ....
Probab=58.39 E-value=29 Score=23.63 Aligned_cols=27 Identities=19% Similarity=0.175 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2067 84 EALNEKNSDLLDKYKRALADGENARQR 110 (225)
Q Consensus 84 ~~leee~~elkdk~lR~~AEfEN~RkR 110 (225)
..|+.++..|..++.++++.|.-|||-
T Consensus 2 ~aLrqQv~aL~~qv~~Lq~~fs~yKKa 28 (46)
T PF09006_consen 2 NALRQQVEALQGQVQRLQAAFSQYKKA 28 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456677777777777888888888763
No 50
>KOG1962|consensus
Probab=57.48 E-value=23 Score=31.50 Aligned_cols=30 Identities=23% Similarity=0.513 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2067 83 IEALNEKNSDLLDKYKRALADGENARQRFN 112 (225)
Q Consensus 83 l~~leee~~elkdk~lR~~AEfEN~RkR~~ 112 (225)
...++++.+++.+.|-|+.+|..++|.+.+
T Consensus 181 ~~al~Kq~e~~~~EydrLlee~~~Lq~~i~ 210 (216)
T KOG1962|consen 181 VDALKKQSEGLQDEYDRLLEEYSKLQEQIE 210 (216)
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHHHHHh
Confidence 334555556666677777777777766654
No 51
>PRK14150 heat shock protein GrpE; Provisional
Probab=57.21 E-value=90 Score=26.97 Aligned_cols=23 Identities=13% Similarity=0.150 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q psy2067 103 DGENARQRFNKQLEESKLYGIQS 125 (225)
Q Consensus 103 EfEN~RkR~~KE~e~akk~aie~ 125 (225)
++.+...|+..+.++.++.....
T Consensus 56 ~~kd~~lR~~AefeN~rkR~~kE 78 (193)
T PRK14150 56 EERDSVLRARAEVENIRRRAEQD 78 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555555555555555544433
No 52
>PRK14155 heat shock protein GrpE; Provisional
Probab=56.33 E-value=1.4e+02 Score=26.21 Aligned_cols=53 Identities=21% Similarity=0.297 Sum_probs=37.4
Q ss_pred CCcchhHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2067 68 VDPKIKEELEDLKKQIEALNEKN----SDLLDKYKRALADGENARQRFNKQLEESKL 120 (225)
Q Consensus 68 ~~~~~~~~i~~L~~el~~leee~----~elkdk~lR~~AEfEN~RkR~~KE~e~akk 120 (225)
.++.+..+++.|++++.+++.++ +++.+--.|+..|.+++++......-...-
T Consensus 14 ~~~~l~~~l~~le~e~~elkd~~lR~~AefeN~RKR~~kE~e~~~~~a~~~~~~~LL 70 (208)
T PRK14155 14 EADDAAQEIEALKAEVAALKDQALRYAAEAENTKRRAEREMNDARAYAIQKFARDLL 70 (208)
T ss_pred cccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34556667777888877766554 567777778888888888887766555433
No 53
>KOG4196|consensus
Probab=56.22 E-value=44 Score=27.63 Aligned_cols=36 Identities=14% Similarity=0.298 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2067 78 DLKKQIEALNEKNSDLLDKYKRALADGENARQRFNK 113 (225)
Q Consensus 78 ~L~~el~~leee~~elkdk~lR~~AEfEN~RkR~~K 113 (225)
.|+++...|..+++.|+..+.|+.-|.++|+-+.++
T Consensus 78 eLE~~k~~L~qqv~~L~~e~s~~~~E~da~k~k~e~ 113 (135)
T KOG4196|consen 78 ELEKEKAELQQQVEKLKEENSRLRRELDAYKSKYEA 113 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456666677778888888888888888888877654
No 54
>PF13805 Pil1: Eisosome component PIL1; PDB: 3PLT_B.
Probab=55.39 E-value=1.7e+02 Score=26.88 Aligned_cols=85 Identities=15% Similarity=0.026 Sum_probs=44.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhhHHHHhhcCCcccccCCChhHHhHHHHHHH
Q psy2067 86 LNEKNSDLLDKYKRALADGENARQRFNKQLEESKLYGIQSFCKDLLDIADTLSLANESVPKEEVKDSNPHLKSLYEGLLM 165 (225)
Q Consensus 86 leee~~elkdk~lR~~AEfEN~RkR~~KE~e~akk~aie~f~kdLLpViDnLERAL~~~~~~~~~~~~~~~~~l~~Gvem 165 (225)
|+.++.......+-+-|.+.|++|+.-||--..+--|....+..+.=+..-=.+-+..++..-. ......+.|.|-.-
T Consensus 170 LeqELvraEae~lvaEAqL~n~kR~~lKEa~~~~f~Al~E~aEK~~Ila~~gk~Ll~lldd~pv--~PG~~r~~Y~g~~~ 247 (271)
T PF13805_consen 170 LEQELVRAEAENLVAEAQLSNIKRQKLKEAYSLKFDALIERAEKQAILAEYGKRLLELLDDTPV--VPGDTRPPYDGYEQ 247 (271)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS--------TTS-------HHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCC--CCCCCCCCCCChhH
Confidence 3333333333444566789999999999999888888777777666555443344444432210 01123467788776
Q ss_pred HHHHHHH
Q psy2067 166 TDGNLKK 172 (225)
Q Consensus 166 i~kqL~~ 172 (225)
+..-+..
T Consensus 248 t~qIl~d 254 (271)
T PF13805_consen 248 TRQILND 254 (271)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 6554443
No 55
>cd07665 BAR_SNX1 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 1. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. SNX1 is a component of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi. The retromer consists of a cargo-recognition subcomplex and a subcomplex formed by a dimer of sorting nexins (SNX1 and/or SNX2), which ensures effcient cargo sorting by facilitating proper membrane localization
Probab=53.63 E-value=1.3e+02 Score=26.77 Aligned_cols=44 Identities=7% Similarity=0.036 Sum_probs=33.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2067 82 QIEALNEKNSDLLDKYKRALADGENARQRFNKQLEESKLYGIQS 125 (225)
Q Consensus 82 el~~leee~~elkdk~lR~~AEfEN~RkR~~KE~e~akk~aie~ 125 (225)
++..++.++.+++.+...+..+|+.+.+++.+|+.+...-=+..
T Consensus 160 K~~~a~~Ev~e~e~k~~~a~~~fe~is~~ik~El~rFe~er~~D 203 (234)
T cd07665 160 KLQQAKDEIAEWESRVTQYERDFERISATVRKEVIRFEKEKSKD 203 (234)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566777777888888899999999999999987766544333
No 56
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=52.57 E-value=84 Score=22.51 Aligned_cols=48 Identities=13% Similarity=0.204 Sum_probs=37.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2067 72 IKEELEDLKKQIEALNEKNSDLLDKYKRALADGENARQRFNKQLEESK 119 (225)
Q Consensus 72 ~~~~i~~L~~el~~leee~~elkdk~lR~~AEfEN~RkR~~KE~e~ak 119 (225)
++..+..|+.+++-++.-+++|.+-+.+...+++-+++++..=.++.+
T Consensus 2 le~Ri~~LE~~la~qe~~ie~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~ 49 (69)
T PF04102_consen 2 LEERIEELEIKLAFQEDTIEELNDVVTEQQRQIDRLQRQLRLLRERLR 49 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356888899999999999999999888888888888777765544444
No 57
>PRK14147 heat shock protein GrpE; Provisional
Probab=50.65 E-value=1.6e+02 Score=25.05 Aligned_cols=59 Identities=29% Similarity=0.325 Sum_probs=40.6
Q ss_pred chhHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2067 71 KIKEELEDLKKQIEALNEKN----SDLLDKYKRALADGENARQRFNKQLEESKLYGIQSFCKD 129 (225)
Q Consensus 71 ~~~~~i~~L~~el~~leee~----~elkdk~lR~~AEfEN~RkR~~KE~e~akk~aie~f~kd 129 (225)
.+..+++.|++++++++..+ +++.+.-.|+..|.++.+++.....-...--.+.+|-+.
T Consensus 22 ~l~~~l~~l~~e~~elkd~~lR~~Ad~eN~rkR~~kE~e~~~~~a~~~~~~~lLpv~DnlerA 84 (172)
T PRK14147 22 PLKAEVESLRSEIALVKADALRERADLENQRKRIARDVEQARKFANEKLLGELLPVFDSLDAG 84 (172)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHH
Confidence 35567777888877776554 577777889999999999888776655544444444333
No 58
>PRK04406 hypothetical protein; Provisional
Probab=50.18 E-value=1e+02 Score=22.73 Aligned_cols=44 Identities=14% Similarity=0.175 Sum_probs=36.6
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2067 71 KIKEELEDLKKQIEALNEKNSDLLDKYKRALADGENARQRFNKQ 114 (225)
Q Consensus 71 ~~~~~i~~L~~el~~leee~~elkdk~lR~~AEfEN~RkR~~KE 114 (225)
.++.++..|+.+++-.+.-+++|.+-+.+.+.+++-+++++..=
T Consensus 8 ~le~Ri~~LE~~lAfQE~tIe~LN~~v~~Qq~~I~~L~~ql~~L 51 (75)
T PRK04406 8 QLEERINDLECQLAFQEQTIEELNDALSQQQLLITKMQDQMKYV 51 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46678999999999999999999999999888888777665543
No 59
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=49.83 E-value=26 Score=29.56 Aligned_cols=33 Identities=24% Similarity=0.316 Sum_probs=15.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2067 72 IKEELEDLKKQIEALNEKNSDLLDKYKRALADG 104 (225)
Q Consensus 72 ~~~~i~~L~~el~~leee~~elkdk~lR~~AEf 104 (225)
.+++++.++.++.+.+.+++.++.+...+..||
T Consensus 159 ~~~ei~~lk~el~~~~~~~~~LkkQ~~~l~~ey 191 (192)
T PF05529_consen 159 LSEEIEKLKKELEKKEKEIEALKKQSEGLQKEY 191 (192)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 344444455555554444444444444444443
No 60
>PRK09039 hypothetical protein; Validated
Probab=49.76 E-value=1.5e+02 Score=27.66 Aligned_cols=44 Identities=18% Similarity=0.298 Sum_probs=23.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2067 72 IKEELEDLKKQIEALNEKNSDLLDKYKRALADGENARQRFNKQL 115 (225)
Q Consensus 72 ~~~~i~~L~~el~~leee~~elkdk~lR~~AEfEN~RkR~~KE~ 115 (225)
+..+++.|+.++..++..+...+.+..-+.+.++.++.++..-+
T Consensus 142 L~~qI~aLr~Qla~le~~L~~ae~~~~~~~~~i~~L~~~L~~a~ 185 (343)
T PRK09039 142 LNQQIAALRRQLAALEAALDASEKRDRESQAKIADLGRRLNVAL 185 (343)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44445555555555555555555555555555555555554443
No 61
>PRK06569 F0F1 ATP synthase subunit B'; Validated
Probab=49.71 E-value=1.6e+02 Score=24.82 Aligned_cols=40 Identities=10% Similarity=0.026 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhhHHHH
Q psy2067 97 YKRALADGENARQRFNKQLEESKLYGIQSFCKDLLDIADTLSLA 140 (225)
Q Consensus 97 ~lR~~AEfEN~RkR~~KE~e~akk~aie~f~kdLLpViDnLERA 140 (225)
-.++.|+.+-=|+.++.+.....+-. ++++.-++|+|.+-
T Consensus 86 ~~~~~a~~~~~~~~~ea~L~~~~~~~----~~~~~~~~~~~~~~ 125 (155)
T PRK06569 86 IDSLESEFLIKKKNLEQDLKNSINQN----IEDINLAAKQFRTN 125 (155)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHh
Confidence 33444444444444444444443333 34555566666654
No 62
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=48.90 E-value=65 Score=22.62 Aligned_cols=31 Identities=32% Similarity=0.573 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2067 74 EELEDLKKQIEALNEKNSDLLDKYKRALADG 104 (225)
Q Consensus 74 ~~i~~L~~el~~leee~~elkdk~lR~~AEf 104 (225)
.++..++.+++.++++.++++.+..++.-+-
T Consensus 24 ~ei~~l~~~i~~l~~e~~~L~~ei~~l~~~~ 54 (80)
T PF04977_consen 24 QEIAELQKEIEELKKENEELKEEIERLKNDP 54 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCH
Confidence 3555555566666666555555555553333
No 63
>PF03938 OmpH: Outer membrane protein (OmpH-like); InterPro: IPR005632 This entry includes outer membrane proteins such as OmpH (Skp) among others. OmpH (outer membrane protein H) is a major structural protein of the outer membrane. In Pasteurella multocida it acts as a channel-forming transmembrane porin []. Porins act as molecular sieves to allow the diffusion of small hydrophilic solutes through the outer membrane and also acts as a receptor for bacteriophages and bacteriocins. Porins are highly immunogenic and are conserved in bacterial families, making them attractive vaccine candidates []. The 17kDa protein (Skp, OmpH) of Escherichia coli is a homotrimeric periplasmic chaperone for newly synthesised outer-membrane proteins, the X-ray structure of which has been reported at resolutions of 2.35 A and 2.30 A [, ]. Three hairpin-shaped alpha-helical extensions reach out by approximately 60 A from a trimerisation domain, which is composed of three intersubunit beta-sheets that wind around a central axis. The alpha-helical extensions approach each other at their distal turns, resulting in a fold that resembles a 'three-pronged grasping forcep'. The overall shape of Skp is reminiscent of the cytosolic chaperone prefoldin (IPR009053 from INTERPRO), although it is based on a radically different topology. The peculiar architecture, with apparent plasticity of the prongs and distinct electrostatic and hydrophobic surface properties, supports the recently proposed biochemical mechanism of this chaperone: formation of a Skp(3)-Omp complex protects the outer membrane protein from aggregation during passage through the bacterial periplasm. The ability of Skp to prevent the aggregation of model substrates in vitro is independent of ATP. Skp can interact directly with membrane lipids and lipopolysaccharide. These interactions are needed for efficient Skp-assisted folding of membrane proteins [].; GO: 0051082 unfolded protein binding; PDB: 1SG2_C 1U2M_C.
Probab=47.63 E-value=1.4e+02 Score=23.77 Aligned_cols=50 Identities=10% Similarity=0.101 Sum_probs=38.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhhHHHH
Q psy2067 91 SDLLDKYKRALADGENARQRFNKQLEESKLYGIQSFCKDLLDIADTLSLA 140 (225)
Q Consensus 91 ~elkdk~lR~~AEfEN~RkR~~KE~e~akk~aie~f~kdLLpViDnLERA 140 (225)
......+.+...++..+..+..+++..........+...+-+++..+-..
T Consensus 79 ~~~~~~l~~~~~~l~~~~~~~~~~l~~~~~~~~~~i~~~i~~~v~~~a~~ 128 (158)
T PF03938_consen 79 QKRQQELQQKEQELQQFQQQAQQQLQQEEQELLQPIQKKINKAVEEYAKE 128 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556677778888888888888888888888888888887777777665
No 64
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=46.51 E-value=1.3e+02 Score=24.21 Aligned_cols=47 Identities=19% Similarity=0.321 Sum_probs=25.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2067 72 IKEELEDLKKQIEALNEKNSDLLDKYKRALADGENARQRFNKQLEES 118 (225)
Q Consensus 72 ~~~~i~~L~~el~~leee~~elkdk~lR~~AEfEN~RkR~~KE~e~a 118 (225)
+...++.|+.+++.++.++.....+...+.+.+.........+.++.
T Consensus 71 l~~~~~rL~~~~~~~ere~~~~~~~~~~l~~~~~~~~~~~k~~kee~ 117 (151)
T PF11559_consen 71 LQNDVERLKEQLEELERELASAEEKERQLQKQLKSLEAKLKQEKEEL 117 (151)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555555555555555555555555555555554443
No 65
>PF09403 FadA: Adhesion protein FadA; InterPro: IPR018543 FadA (Fusobacterium adhesin A) is an adhesin which forms two alpha helices. ; PDB: 3ETZ_B 3ETY_A 2GL2_B 3ETX_C 3ETW_A.
Probab=46.06 E-value=1.6e+02 Score=23.96 Aligned_cols=27 Identities=22% Similarity=0.426 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2067 93 LLDKYKRALADGENARQRFNKQLEESK 119 (225)
Q Consensus 93 lkdk~lR~~AEfEN~RkR~~KE~e~ak 119 (225)
+++.|.-+...+..+++.+++++.+-.
T Consensus 87 yk~eYk~llk~y~~~~~~L~k~I~~~e 113 (126)
T PF09403_consen 87 YKDEYKELLKKYKDLLNKLDKEIAEQE 113 (126)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467788888888888888888876654
No 66
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=45.84 E-value=1.3e+02 Score=31.53 Aligned_cols=85 Identities=16% Similarity=0.183 Sum_probs=51.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhhHHHHhhcCCcccccCCChh
Q psy2067 76 LEDLKKQIEALNEKNSDLLDKYKRALADGENARQRFNKQLEESKLYGIQSFCKDLLDIADTLSLANESVPKEEVKDSNPH 155 (225)
Q Consensus 76 i~~L~~el~~leee~~elkdk~lR~~AEfEN~RkR~~KE~e~akk~aie~f~kdLLpViDnLERAL~~~~~~~~~~~~~~ 155 (225)
...+..++..++.++..+..-...+..+++....|+..-..+.. +|..-.+.|..++..+... .
T Consensus 953 ~~~l~~~l~~l~~~i~~l~~vN~~Ai~~~~~~~~~~~~l~~q~~---------dl~~~~~~l~~~i~~l~~~-------~ 1016 (1164)
T TIGR02169 953 LEDVQAELQRVEEEIRALEPVNMLAIQEYEEVLKRLDELKEKRA---------KLEEERKAILERIEEYEKK-------K 1016 (1164)
T ss_pred HHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHH-------H
Confidence 45677777777777777766666777888888777766555443 3333344444444433221 2
Q ss_pred HHhHHHHHHHHHHHHHHHhcc
Q psy2067 156 LKSLYEGLLMTDGNLKKHAHP 176 (225)
Q Consensus 156 ~~~l~~Gvemi~kqL~~vLek 176 (225)
...+...|..|...|..+|..
T Consensus 1017 ~~~f~~~f~~~~~~f~~~~~~ 1037 (1164)
T TIGR02169 1017 REVFMEAFEAINENFNEIFAE 1037 (1164)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 345667777777777777433
No 67
>PF06810 Phage_GP20: Phage minor structural protein GP20; InterPro: IPR009636 This family consists of several phage minor structural protein Gp20 sequences and prophage sequences of around 180 residues in length. The function of this family is unknown.; GO: 0005198 structural molecule activity
Probab=45.73 E-value=1.7e+02 Score=24.28 Aligned_cols=55 Identities=24% Similarity=0.353 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHH
Q psy2067 75 ELEDLKKQIEALNEKNSDLLD----------KYKRALADGENARQRFNKQLEE-SKLYGIQSFCKD 129 (225)
Q Consensus 75 ~i~~L~~el~~leee~~elkd----------k~lR~~AEfEN~RkR~~KE~e~-akk~aie~f~kd 129 (225)
++..++.++....++++.|+. ++..+++++.-.....+.++.+ .+.+|+...+..
T Consensus 28 e~~~~k~ql~~~d~~i~~Lk~~~~d~eeLk~~i~~lq~~~~~~~~~~e~~l~~~~~~~ai~~al~~ 93 (155)
T PF06810_consen 28 ERDNLKTQLKEADKQIKDLKKSAKDNEELKKQIEELQAKNKTAKEEYEAKLAQMKKDSAIKSALKG 93 (155)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444445555554444444443 4444444444333333333332 234444444433
No 68
>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea. Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st
Probab=45.72 E-value=1.1e+02 Score=23.41 Aligned_cols=41 Identities=12% Similarity=0.218 Sum_probs=27.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2067 73 KEELEDLKKQIEALNEKNSDLLDKYKRALADGENARQRFNK 113 (225)
Q Consensus 73 ~~~i~~L~~el~~leee~~elkdk~lR~~AEfEN~RkR~~K 113 (225)
.+.+..|+..++.++..++.+..++..+..++.+++.++.+
T Consensus 62 ~ea~~~Le~~~e~le~~i~~l~~~~~~l~~~~~elk~~l~~ 102 (105)
T cd00632 62 EEARTELKERLETIELRIKRLERQEEDLQEKLKELQEKIQQ 102 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455666777777777777777777777777777766643
No 69
>PRK11637 AmiB activator; Provisional
Probab=45.63 E-value=88 Score=29.68 Aligned_cols=46 Identities=13% Similarity=0.200 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2067 75 ELEDLKKQIEALNEKNSDLLDKYKRALADGENARQRFNKQLEESKL 120 (225)
Q Consensus 75 ~i~~L~~el~~leee~~elkdk~lR~~AEfEN~RkR~~KE~e~akk 120 (225)
.+..++.++..++.++..+..++..+.++.+..+..+.+-+...++
T Consensus 90 ~i~~~~~~i~~~~~ei~~l~~eI~~~q~~l~~~~~~l~~rlra~Y~ 135 (428)
T PRK11637 90 KLRETQNTLNQLNKQIDELNASIAKLEQQQAAQERLLAAQLDAAFR 135 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444455555556666666666666666666666666666666665
No 70
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=45.01 E-value=2e+02 Score=29.49 Aligned_cols=72 Identities=15% Similarity=0.153 Sum_probs=43.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhhhHHhhHHHHhhc
Q psy2067 72 IKEELEDLKKQIEALNEKNSDLLDKYKRALADGENARQRFNKQLEESKL-YGIQSFCKDLLDIADTLSLANES 143 (225)
Q Consensus 72 ~~~~i~~L~~el~~leee~~elkdk~lR~~AEfEN~RkR~~KE~e~akk-~aie~f~kdLLpViDnLERAL~~ 143 (225)
...++..+...++.++.++.+|+..+.++.++.++++.+..+=..+.+. -.+..=+..+-.-++.|++.|.-
T Consensus 420 ~~~~i~~~~~~ve~l~~e~~~L~~~~ee~k~eie~L~~~l~~~~r~~~~~~~~~rei~~~~~~I~~L~~~L~e 492 (652)
T COG2433 420 YEKRIKKLEETVERLEEENSELKRELEELKREIEKLESELERFRREVRDKVRKDREIRARDRRIERLEKELEE 492 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH
Confidence 4445566666666677777776666666666666666665544443332 22333445566667777777754
No 71
>PRK14163 heat shock protein GrpE; Provisional
Probab=44.64 E-value=2.3e+02 Score=25.16 Aligned_cols=60 Identities=8% Similarity=0.116 Sum_probs=42.7
Q ss_pred CcchhHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2067 69 DPKIKEELEDLKKQIEALNEKN----SDLLDKYKRALADGENARQRFNKQLEESKLYGIQSFCK 128 (225)
Q Consensus 69 ~~~~~~~i~~L~~el~~leee~----~elkdk~lR~~AEfEN~RkR~~KE~e~akk~aie~f~k 128 (225)
...+..+++.|++++.+++.++ +++.+--.|+..|.++++++.....-...--.+.+|-+
T Consensus 42 ~~~l~~~l~~l~~e~~el~d~~lR~~AEfeN~rkR~~kE~e~~~~~a~~~~~~~LLpVlDnLer 105 (214)
T PRK14163 42 TAGLTAQLDQVRTALGERTADLQRLQAEYQNYRRRVERDRVTVKEIAVANLLSELLPVLDDVGR 105 (214)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhHHHH
Confidence 5667778888888888876554 56777788899999999888877665554444444433
No 72
>PF13870 DUF4201: Domain of unknown function (DUF4201)
Probab=44.13 E-value=1.2e+02 Score=25.27 Aligned_cols=55 Identities=22% Similarity=0.386 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy2067 76 LEDLKKQIEALNEKNSDLLDKYKRALADGENARQRFNKQLEESKLYGIQSFCKDL 130 (225)
Q Consensus 76 i~~L~~el~~leee~~elkdk~lR~~AEfEN~RkR~~KE~e~akk~aie~f~kdL 130 (225)
...+..++...++.+..+.+.+.++..+-..+|+...+=....-.+..-.++.|+
T Consensus 93 ~~~l~~~l~~~~~~~~~~r~~l~~~k~~r~k~~~~~~~l~~~~~~~~~P~ll~Dy 147 (177)
T PF13870_consen 93 LERLKQELKDREEELAKLREELYRVKKERDKLRKQNKKLRQQGGLLGVPALLRDY 147 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcHHHHHH
Confidence 3344444555555555555555555555555555555544444444444444333
No 73
>PRK00736 hypothetical protein; Provisional
Probab=44.05 E-value=1.2e+02 Score=21.82 Aligned_cols=46 Identities=17% Similarity=0.279 Sum_probs=37.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2067 73 KEELEDLKKQIEALNEKNSDLLDKYKRALADGENARQRFNKQLEES 118 (225)
Q Consensus 73 ~~~i~~L~~el~~leee~~elkdk~lR~~AEfEN~RkR~~KE~e~a 118 (225)
+..+..|+.+++-.+.-+++|.+-+.+.+.+++-+++++..=.++.
T Consensus 4 e~Ri~~LE~klafqe~tie~Ln~~v~~Qq~~i~~L~~ql~~L~~rl 49 (68)
T PRK00736 4 EERLTELEIRVAEQEKTIEELSDQLAEQWKTVEQMRKKLDALTERF 49 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4678999999999999999999999999988888887766544444
No 74
>PF14357 DUF4404: Domain of unknown function (DUF4404)
Probab=43.77 E-value=20 Score=27.04 Aligned_cols=18 Identities=11% Similarity=-0.084 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHhcccCC
Q psy2067 162 GLLMTDGNLKKHAHPVEY 179 (225)
Q Consensus 162 Gvemi~kqL~~vLek~Gv 179 (225)
.+-+|.+.+..+|.+.||
T Consensus 68 ~l~~~lr~i~~sLa~MGI 85 (85)
T PF14357_consen 68 KLAGILRNIMDSLANMGI 85 (85)
T ss_pred cHHHHHHHHHHHHHHCCC
Confidence 456688888999988843
No 75
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=43.55 E-value=1.6e+02 Score=27.39 Aligned_cols=69 Identities=12% Similarity=0.251 Sum_probs=51.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhhHHHHhhcCC
Q psy2067 75 ELEDLKKQIEALNEKNSDLLDKYKRALADGENARQRFNKQLEESKLYGIQSFCKDLLDIADTLSLANESVP 145 (225)
Q Consensus 75 ~i~~L~~el~~leee~~elkdk~lR~~AEfEN~RkR~~KE~e~akk~aie~f~kdLLpViDnLERAL~~~~ 145 (225)
.|.+|+..++.|+++...-.=++--+.|-++--|+..+.++.+. .++..=-..|++++|||+++..-+.
T Consensus 19 KIqelE~QldkLkKE~qQrQfQleSlEAaLqKQKqK~e~ek~e~--s~LkREnq~l~e~c~~lek~rqKls 87 (307)
T PF10481_consen 19 KIQELEQQLDKLKKERQQRQFQLESLEAALQKQKQKVEEEKNEY--SALKRENQSLMESCENLEKTRQKLS 87 (307)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhh--hhhhhhhhhHHHHHHHHHHHHHHhh
Confidence 67788888888888776666666667777777777776666554 3555566789999999999966654
No 76
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=43.43 E-value=73 Score=24.81 Aligned_cols=35 Identities=14% Similarity=0.263 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2067 75 ELEDLKKQIEALNEKNSDLLDKYKRALADGENARQ 109 (225)
Q Consensus 75 ~i~~L~~el~~leee~~elkdk~lR~~AEfEN~Rk 109 (225)
....++++++.+++++++++.+..++.++.+.++.
T Consensus 28 ~~~~l~~q~~~~~~e~~~l~~~n~~L~~eI~~L~~ 62 (105)
T PRK00888 28 DYWRVNDQVAAQQQTNAKLKARNDQLFAEIDDLKG 62 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 45566777777777777777777777777776664
No 77
>KOG2911|consensus
Probab=42.94 E-value=3.2e+02 Score=26.87 Aligned_cols=31 Identities=29% Similarity=0.356 Sum_probs=22.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2067 73 KEELEDLKKQIEALNEKNSDLLDKYKRALAD 103 (225)
Q Consensus 73 ~~~i~~L~~el~~leee~~elkdk~lR~~AE 103 (225)
......|..+++.|+++++..++++.++..+
T Consensus 239 ~~~~~~L~kqie~L~qeie~~~~~~r~~~k~ 269 (439)
T KOG2911|consen 239 IQARAKLAKQIEFLEQEIEKSKEKLRQALKE 269 (439)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3344667788888888888888887755443
No 78
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=42.88 E-value=1.4e+02 Score=27.29 Aligned_cols=46 Identities=11% Similarity=0.278 Sum_probs=25.2
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2067 71 KIKEELEDLKKQIEALNEKNSDLLDKYKRALADGENARQRFNKQLE 116 (225)
Q Consensus 71 ~~~~~i~~L~~el~~leee~~elkdk~lR~~AEfEN~RkR~~KE~e 116 (225)
.+...+..+..++..+++++.+.+....++..++.-.+.|+....+
T Consensus 56 ~L~~qi~~~~~k~~~~~~~i~~~~~eik~l~~eI~~~~~~I~~r~~ 101 (265)
T COG3883 56 SLDNQIEEIQSKIDELQKEIDQSKAEIKKLQKEIAELKENIVERQE 101 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555555566666666666666666555555544333
No 79
>cd07596 BAR_SNX The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=42.66 E-value=1.9e+02 Score=23.72 Aligned_cols=40 Identities=18% Similarity=0.185 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2067 83 IEALNEKNSDLLDKYKRALADGENARQRFNKQLEESKLYG 122 (225)
Q Consensus 83 l~~leee~~elkdk~lR~~AEfEN~RkR~~KE~e~akk~a 122 (225)
+..++.++.++......+..+++-+..++..|+......-
T Consensus 147 i~~l~~~i~~~e~~~~~~~~~~~~i~~~~~~El~~f~~~~ 186 (218)
T cd07596 147 VEELEEELEEAESALEEARKRYEEISERLKEELKRFHEER 186 (218)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444455555555555666666666666666555443
No 80
>PRK14143 heat shock protein GrpE; Provisional
Probab=42.60 E-value=2.3e+02 Score=25.35 Aligned_cols=62 Identities=24% Similarity=0.320 Sum_probs=43.6
Q ss_pred CcchhHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy2067 69 DPKIKEELEDLKKQIEALNEKN----SDLLDKYKRALADGENARQRFNKQLEESKLYGIQSFCKDL 130 (225)
Q Consensus 69 ~~~~~~~i~~L~~el~~leee~----~elkdk~lR~~AEfEN~RkR~~KE~e~akk~aie~f~kdL 130 (225)
...+..+++.|++++.+++.++ +++.+--.|...|.+++++......-...--.+.+|-+.|
T Consensus 69 ~~~l~~el~~l~~e~~elkd~~lR~~AdfeN~RKR~~kE~e~~~~~a~~~~~~~lLpV~DnLerAl 134 (238)
T PRK14143 69 LAQLEQELESLKQELEELNSQYMRIAADFDNFRKRTSREQEDLRLQLKCNTLSEILPVVDNFERAR 134 (238)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 3456677788888888776654 5677777888888898888877766665555555555443
No 81
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=42.08 E-value=1.8e+02 Score=23.46 Aligned_cols=91 Identities=19% Similarity=0.158 Sum_probs=39.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HH--HHHHHHHHHhhhHHhhHHHHhhcCCcccccC
Q psy2067 77 EDLKKQIEALNEKNSDLLDKYKRALADGENARQRFNKQLEES---KL--YGIQSFCKDLLDIADTLSLANESVPKEEVKD 151 (225)
Q Consensus 77 ~~L~~el~~leee~~elkdk~lR~~AEfEN~RkR~~KE~e~a---kk--~aie~f~kdLLpViDnLERAL~~~~~~~~~~ 151 (225)
-.|-.....-....+.+.++..++.+|.+.+.....+-..+. .. -+.+.=...+---+.++..++.....
T Consensus 41 ~~Ll~~~~r~~~~~e~l~~~~~~l~~d~~~l~~~~~rL~~~~~~~ere~~~~~~~~~~l~~~~~~~~~~~k~~ke----- 115 (151)
T PF11559_consen 41 YDLLQQRDRDMEQREDLSDKLRRLRSDIERLQNDVERLKEQLEELERELASAEEKERQLQKQLKSLEAKLKQEKE----- 115 (151)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----
Confidence 333333444444445555555555555554443333222211 11 12333334444445555555555432
Q ss_pred CChhHHhHHHHHHHHHHHHHHHhc
Q psy2067 152 SNPHLKSLYEGLLMTDGNLKKHAH 175 (225)
Q Consensus 152 ~~~~~~~l~~Gvemi~kqL~~vLe 175 (225)
.+.-+...+.-+..+...-+.
T Consensus 116 ---e~~klk~~~~~~~tq~~~e~r 136 (151)
T PF11559_consen 116 ---ELQKLKNQLQQRKTQYEHELR 136 (151)
T ss_pred ---HHHHHHHHHHHHHHHHHHHHH
Confidence 244444455555555544443
No 82
>PF11083 Streptin-Immun: Lantibiotic streptin immunity protein; InterPro: IPR021112 Streptococcal species produce a lantibiotic, streptin, in a similar manner to the production of nisin and subtilin by other lactic acid bacteria, in order to compete against competing bacteria within the environment []. The immunity protein protects the bacterium from destruction by its own lantibiotic. In general, there is little homology between the immunity proteins of different genera of bacteria.
Probab=41.44 E-value=51 Score=25.95 Aligned_cols=39 Identities=26% Similarity=0.350 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2067 74 EELEDLKKQIEALNEKNSDLLDKYKRALADGENARQRFN 112 (225)
Q Consensus 74 ~~i~~L~~el~~leee~~elkdk~lR~~AEfEN~RkR~~ 112 (225)
-.++.++.++..++.++..+.++|-.+.--++.|.++..
T Consensus 52 itle~ve~Ei~~lQ~qL~~~ldeYE~~VrrLE~fvkvLn 90 (99)
T PF11083_consen 52 ITLEQVEKEIRELQNQLGLYLDEYEKLVRRLEKFVKVLN 90 (99)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 356777888888888888888888888888888887765
No 83
>PRK04325 hypothetical protein; Provisional
Probab=40.42 E-value=1.4e+02 Score=21.74 Aligned_cols=46 Identities=9% Similarity=0.122 Sum_probs=36.0
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2067 71 KIKEELEDLKKQIEALNEKNSDLLDKYKRALADGENARQRFNKQLE 116 (225)
Q Consensus 71 ~~~~~i~~L~~el~~leee~~elkdk~lR~~AEfEN~RkR~~KE~e 116 (225)
.++.++..|+.+++-.+.-+++|.+-+.+.+.+++-+++++..=.+
T Consensus 6 ~~e~Ri~~LE~klAfQE~tIe~LN~vv~~Qq~~I~~L~~ql~~L~~ 51 (74)
T PRK04325 6 EMEDRITELEIQLAFQEDLIDGLNATVARQQQTLDLLQAQLRLLYQ 51 (74)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3567889999999999999999999988888888777766544333
No 84
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=39.48 E-value=4.5e+02 Score=27.12 Aligned_cols=44 Identities=18% Similarity=0.253 Sum_probs=25.7
Q ss_pred CcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2067 69 DPKIKEELEDLKKQIEALNEKNSDLLDKYKRALADGENARQRFN 112 (225)
Q Consensus 69 ~~~~~~~i~~L~~el~~leee~~elkdk~lR~~AEfEN~RkR~~ 112 (225)
..++...++.|+.++..|+.++++++.....+.++++-+|++..
T Consensus 424 i~~~~~~ve~l~~e~~~L~~~~ee~k~eie~L~~~l~~~~r~~~ 467 (652)
T COG2433 424 IKKLEETVERLEEENSELKRELEELKREIEKLESELERFRREVR 467 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555666666666666666666665556666666555554
No 85
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=39.31 E-value=3.8e+02 Score=27.00 Aligned_cols=33 Identities=12% Similarity=0.137 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2067 79 LKKQIEALNEKNSDLLDKYKRALADGENARQRF 111 (225)
Q Consensus 79 L~~el~~leee~~elkdk~lR~~AEfEN~RkR~ 111 (225)
++.++.+++.++..+..+..++..+.+.+++..
T Consensus 433 l~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 465 (650)
T TIGR03185 433 AQNELFRSEAEIEELLRQLETLKEAIEALRKTL 465 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333334444444444444444444333
No 86
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=38.94 E-value=1.1e+02 Score=23.71 Aligned_cols=26 Identities=12% Similarity=0.201 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2067 76 LEDLKKQIEALNEKNSDLLDKYKRAL 101 (225)
Q Consensus 76 i~~L~~el~~leee~~elkdk~lR~~ 101 (225)
++.+++++++++.+.+.|+.+..++.
T Consensus 36 ~~~~~~e~~~l~~~n~~L~~eI~~L~ 61 (105)
T PRK00888 36 VAAQQQTNAKLKARNDQLFAEIDDLK 61 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 33334444444444444444443333
No 87
>PRK14139 heat shock protein GrpE; Provisional
Probab=38.33 E-value=2.6e+02 Score=24.10 Aligned_cols=61 Identities=20% Similarity=0.193 Sum_probs=42.3
Q ss_pred CcchhHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2067 69 DPKIKEELEDLKKQIEALNEKN----SDLLDKYKRALADGENARQRFNKQLEESKLYGIQSFCKD 129 (225)
Q Consensus 69 ~~~~~~~i~~L~~el~~leee~----~elkdk~lR~~AEfEN~RkR~~KE~e~akk~aie~f~kd 129 (225)
...+..+++.+++++.+++.++ .++.+--.|+..|.++.++......-...--.+.+|-+.
T Consensus 34 ~~~l~~~l~~le~e~~elkd~~lR~~AefeN~rKR~~kE~e~~~~~a~~~~~~~LLpv~DnLerA 98 (185)
T PRK14139 34 APALEAELAEAEAKAAELQDSFLRAKAETENVRRRAQEDVAKAHKFAIESFAESLLPVKDSLEAA 98 (185)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhHHHHH
Confidence 4556667888888888776654 567777788888999888888776655544444444433
No 88
>PRK02119 hypothetical protein; Provisional
Probab=38.16 E-value=1.6e+02 Score=21.52 Aligned_cols=46 Identities=7% Similarity=0.064 Sum_probs=37.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2067 72 IKEELEDLKKQIEALNEKNSDLLDKYKRALADGENARQRFNKQLEE 117 (225)
Q Consensus 72 ~~~~i~~L~~el~~leee~~elkdk~lR~~AEfEN~RkR~~KE~e~ 117 (225)
++.++..|+.+++-.+.-+++|.+-+.+.+.+++-+++.+..=.++
T Consensus 7 ~e~Ri~~LE~rla~QE~tie~LN~~v~~Qq~~id~L~~ql~~L~~r 52 (73)
T PRK02119 7 LENRIAELEMKIAFQENLLEELNQALIEQQFVIDKMQVQLRYMANK 52 (73)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5678899999999999999999999999888888777666544333
No 89
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=38.03 E-value=2.1e+02 Score=22.81 Aligned_cols=46 Identities=22% Similarity=0.376 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2067 75 ELEDLKKQIEALNEKNSDLLDKYKRALADGENARQRFNKQLEESKL 120 (225)
Q Consensus 75 ~i~~L~~el~~leee~~elkdk~lR~~AEfEN~RkR~~KE~e~akk 120 (225)
+...++..+..++.+....+..+....+..+.-|.++++++..+..
T Consensus 67 e~~~~~~~~~~l~~~~~~a~~~l~~~e~sw~~qk~~le~e~~~~~~ 112 (132)
T PF07926_consen 67 ELQELQQEINELKAEAESAKAELEESEASWEEQKEQLEKELSELEQ 112 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 4444445555555555555555666666666667777777766654
No 90
>PRK14154 heat shock protein GrpE; Provisional
Probab=37.86 E-value=2.9e+02 Score=24.39 Aligned_cols=61 Identities=15% Similarity=0.176 Sum_probs=41.0
Q ss_pred CcchhHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2067 69 DPKIKEELEDLKKQIEALNEKN----SDLLDKYKRALADGENARQRFNKQLEESKLYGIQSFCKD 129 (225)
Q Consensus 69 ~~~~~~~i~~L~~el~~leee~----~elkdk~lR~~AEfEN~RkR~~KE~e~akk~aie~f~kd 129 (225)
.+.+..+++.+++++++++.+. +++.+--.|+..|.+.++++.....-...--.+.+|-+.
T Consensus 54 ~~~l~~el~~le~e~~elkd~~lRl~ADfeNyRKR~~kE~e~~~~~a~e~~~~~LLpVlDnLeRA 118 (208)
T PRK14154 54 REKLEGQLTRMERKVDEYKTQYLRAQAEMDNLRKRIEREKADIIKFGSKQLITDLLPVADSLIHG 118 (208)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhHHHHH
Confidence 4556677888888887776654 566777778888888888887766555444444444433
No 91
>PRK02793 phi X174 lysis protein; Provisional
Probab=37.73 E-value=1.6e+02 Score=21.42 Aligned_cols=45 Identities=11% Similarity=0.102 Sum_probs=36.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2067 72 IKEELEDLKKQIEALNEKNSDLLDKYKRALADGENARQRFNKQLE 116 (225)
Q Consensus 72 ~~~~i~~L~~el~~leee~~elkdk~lR~~AEfEN~RkR~~KE~e 116 (225)
++.++..|+.+++-.+.-+++|.+-+.+.+.+++-+++.+..=.+
T Consensus 6 ~e~Ri~~LE~~lafQe~tIe~Ln~~v~~Qq~~I~~L~~~l~~L~~ 50 (72)
T PRK02793 6 LEARLAELESRLAFQEITIEELNVTVTAHEMEMAKLRDHLRLLTE 50 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567889999999999999999999998888888777766544333
No 92
>PF06120 Phage_HK97_TLTM: Tail length tape measure protein; InterPro: IPR009302 This entry consists of the tail length tape measure protein from Bacteriophage HK97 and related sequences from Escherichia coli (strain K12).
Probab=37.63 E-value=2.3e+02 Score=26.33 Aligned_cols=70 Identities=14% Similarity=0.136 Sum_probs=40.6
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHH--HHHHHHHHHhhhHHhhHHHH
Q psy2067 71 KIKEELEDLKKQIEALNEKNSDLLDKYKRALADGENARQRFNKQLE----ESKL--YGIQSFCKDLLDIADTLSLA 140 (225)
Q Consensus 71 ~~~~~i~~L~~el~~leee~~elkdk~lR~~AEfEN~RkR~~KE~e----~akk--~aie~f~kdLLpViDnLERA 140 (225)
++...+..+...|.+.+..+++++.++..+...+.+|.+-+...-. .... ..+..+..++-...+.|..+
T Consensus 71 ql~~~~~k~~~si~~q~~~i~~l~~~i~~l~~~i~~y~~~~~~~~~~~~~~~~n~~~~~~~~t~~la~~t~~L~~~ 146 (301)
T PF06120_consen 71 QLRANIAKAEESIAAQKRAIEDLQKKIDSLKDQIKNYQQQLAEKGITENGYIINHLMSQADATRKLAEATRELAVA 146 (301)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666677777777777788888887777777777643322110 1111 22345555555555555554
No 93
>PRK14011 prefoldin subunit alpha; Provisional
Probab=37.55 E-value=2.2e+02 Score=23.53 Aligned_cols=52 Identities=19% Similarity=0.308 Sum_probs=42.0
Q ss_pred CcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2067 69 DPKIKEELEDLKKQIEALNEKNSDLLDKYKRALADGENARQRFNKQLEESKL 120 (225)
Q Consensus 69 ~~~~~~~i~~L~~el~~leee~~elkdk~lR~~AEfEN~RkR~~KE~e~akk 120 (225)
+....+.++-++.+++.+++..+.+...+......+..++++++.....+-+
T Consensus 83 Ek~~~eA~~~~~~ri~~l~~~~~~l~~~i~~~~~~~~~l~~~L~~k~~~~~~ 134 (144)
T PRK14011 83 EKDVSEVIEDFKKSVEELDKTKKEGNKKIEELNKEITKLRKELEKRAQAIEQ 134 (144)
T ss_pred EecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4446777788889999999998889888888888888888888877766543
No 94
>smart00338 BRLZ basic region leucin zipper.
Probab=37.46 E-value=1.4e+02 Score=20.67 Aligned_cols=34 Identities=26% Similarity=0.466 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2067 75 ELEDLKKQIEALNEKNSDLLDKYKRALADGENAR 108 (225)
Q Consensus 75 ~i~~L~~el~~leee~~elkdk~lR~~AEfEN~R 108 (225)
.+..|+.++..|..+..+|..++..+..++..++
T Consensus 27 ~~~~Le~~~~~L~~en~~L~~~~~~l~~e~~~lk 60 (65)
T smart00338 27 EIEELERKVEQLEAENERLKKEIERLRRELEKLK 60 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555566666666666655555555555554
No 95
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=37.30 E-value=1.9e+02 Score=24.68 Aligned_cols=33 Identities=30% Similarity=0.398 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2067 79 LKKQIEALNEKNSDLLDKYKRALADGENARQRF 111 (225)
Q Consensus 79 L~~el~~leee~~elkdk~lR~~AEfEN~RkR~ 111 (225)
+..+...++.++.+|+.++..+.++.+.+.++.
T Consensus 102 ~~~e~~~l~~e~~~l~~~~e~Le~e~~~L~~~~ 134 (161)
T TIGR02894 102 LQKENERLKNQNESLQKRNEELEKELEKLRQRL 134 (161)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555566666666666666666666665554
No 96
>PRK14162 heat shock protein GrpE; Provisional
Probab=37.25 E-value=2.5e+02 Score=24.42 Aligned_cols=60 Identities=15% Similarity=0.258 Sum_probs=40.1
Q ss_pred cchhHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2067 70 PKIKEELEDLKKQIEALNEKN----SDLLDKYKRALADGENARQRFNKQLEESKLYGIQSFCKD 129 (225)
Q Consensus 70 ~~~~~~i~~L~~el~~leee~----~elkdk~lR~~AEfEN~RkR~~KE~e~akk~aie~f~kd 129 (225)
..+..+++.|++++++++.++ +++.+--.|...|.++.+++.....-...--.+.+|-+.
T Consensus 42 ~~l~~~l~~l~~e~~elkd~~lR~~AEfeN~rkR~~kE~e~~~~~a~~~~~~~LLpV~DnLerA 105 (194)
T PRK14162 42 EDLEKEIADLKAKNKDLEDKYLRSQAEIQNMQNRYAKERAQLIKYESQSLAKDVLPAMDNLERA 105 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhHHHHH
Confidence 345567777777777766554 567777788889999999887666555444444444333
No 97
>PF12761 End3: Actin cytoskeleton-regulatory complex protein END3
Probab=37.15 E-value=1.4e+02 Score=26.24 Aligned_cols=20 Identities=35% Similarity=0.391 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q psy2067 75 ELEDLKKQIEALNEKNSDLL 94 (225)
Q Consensus 75 ~i~~L~~el~~leee~~elk 94 (225)
++..|+.+|++|+.++....
T Consensus 97 EevrLkrELa~Le~~l~~~~ 116 (195)
T PF12761_consen 97 EEVRLKRELAELEEKLSKVE 116 (195)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 44455556665555554433
No 98
>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal. Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.
Probab=36.69 E-value=1.7e+02 Score=22.48 Aligned_cols=42 Identities=17% Similarity=0.273 Sum_probs=30.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2067 72 IKEELEDLKKQIEALNEKNSDLLDKYKRALADGENARQRFNK 113 (225)
Q Consensus 72 ~~~~i~~L~~el~~leee~~elkdk~lR~~AEfEN~RkR~~K 113 (225)
..+-+..|+..++.++..++.+..+..++...+.+.++++..
T Consensus 65 ~~e~~~~l~~r~e~ie~~i~~lek~~~~l~~~l~e~q~~l~~ 106 (110)
T TIGR02338 65 KEEAIQELKEKKETLELRVKTLQRQEERLREQLKELQEKIQE 106 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344556677777777777777777777777777777776654
No 99
>PF08581 Tup_N: Tup N-terminal; InterPro: IPR013890 The N-terminal region of the Tup protein has been shown to interact with the Ssn6 transcriptional co-repressor []. ; PDB: 3VP9_B 3VP8_B.
Probab=36.52 E-value=1.6e+02 Score=21.94 Aligned_cols=41 Identities=17% Similarity=0.397 Sum_probs=27.7
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2067 71 KIKEELEDLKKQIEALNEKNSDLLDKYKRALADGENARQRF 111 (225)
Q Consensus 71 ~~~~~i~~L~~el~~leee~~elkdk~lR~~AEfEN~RkR~ 111 (225)
++..+.+.+..++...+.+.+++..++....+|++.+|..+
T Consensus 8 ~ir~Ef~~~~~e~~~~k~~~~e~e~ki~~Qi~Em~~ir~~v 48 (79)
T PF08581_consen 8 AIRQEFENLSQEANSYKHQKDEYEHKINSQIQEMQQIRQKV 48 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555556666666666677777778777778887777653
No 100
>PF05791 Bacillus_HBL: Bacillus haemolytic enterotoxin (HBL); InterPro: IPR008414 This family consists of several Bacillus haemolytic enterotoxins (HblC, HblD, HblA, NheA, and NheB), which can cause food poisoning in humans []. Haemolysin BL (encoded by HBL) and non-haemolytic enterotoxin (encoded by NHE), represent the major enterotoxins produced by Bacillus cereus. Most of the cytotoxic activity of B. cereus isolates has been attributed to the level of Nhe, which may indicate a highly diarrheic potential []. The exact mechanism by which B. cereus causes diarrhoea is unknown. Hbl, cytotoxin K (CytK) and Nhe are all putative causes. Both Hbl and Nhe are three-component cytotoxins and maximal cytotoxicity of Nhe against epithelia is dependent on all three components. Nhe has haemolytic activity against erythrocytes from a variety of species. It is possible that the common structural and functional properties of these toxins indicate that the Hbl/Nhe and ClyA families of toxins constitute a superfamily of pore-forming cytotoxins []. The high virulence of some strains is thought to be due to the greater cytotoxic activity of CytK-1 compared to CytK-2, and to a high level of cytK expression []. Haemolysin BL and non-haemolytic enterotoxin production are both influenced by pH and micro []. This entry is found in cytotoxic proteins that form part of the enterotoxin complex and bind to erythrocytes. HblA is composed of a binding component, B, and two lytic components, L1 and L2. All three subunits act synergically to cause hemolysis.; GO: 0009405 pathogenesis, 0016020 membrane; PDB: 2NRJ_A.
Probab=36.52 E-value=2.6e+02 Score=23.60 Aligned_cols=48 Identities=23% Similarity=0.273 Sum_probs=39.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2067 75 ELEDLKKQIEALNEKNSDLLDKYKRALADGENARQRFNKQLEESKLYG 122 (225)
Q Consensus 75 ~i~~L~~el~~leee~~elkdk~lR~~AEfEN~RkR~~KE~e~akk~a 122 (225)
..+.+.+-+..|..++....++..++..+...||.++.++.......+
T Consensus 104 ~~~~~~~~i~~L~~~i~~~q~~~~~~i~~L~~f~~~l~~D~~~l~~~~ 151 (184)
T PF05791_consen 104 DKEDLKEIIEDLQDQIQKNQDKVQALINELNDFKDKLQKDSRNLKTDV 151 (184)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 445577788888999999999999999999999999999887766443
No 101
>PF04201 TPD52: Tumour protein D52 family; InterPro: IPR007327 The hD52 gene was originally identified through its elevated expression level in human breast carcinoma. Cloning of D52 homologues from other species has indicated that D52 may play roles in calcium-mediated signal transduction and cell proliferation. Two human homologues of hD52, hD53 and hD54, have also been identified, demonstrating the existence of a novel gene/protein family []. These proteins have an N-terminal coiled-coil that allows members to form homo- and heterodimers with each other [].
Probab=35.78 E-value=2.8e+02 Score=23.66 Aligned_cols=93 Identities=18% Similarity=0.263 Sum_probs=53.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHH-------HHHHHHHHHHHHHHhhhHHhhH
Q psy2067 73 KEELEDLKKQIEALNEKNSDLLDKYKRALADGENARQRF--------NKQL-------EESKLYGIQSFCKDLLDIADTL 137 (225)
Q Consensus 73 ~~~i~~L~~el~~leee~~elkdk~lR~~AEfEN~RkR~--------~KE~-------e~akk~aie~f~kdLLpViDnL 137 (225)
+++-++|+.+|.+.+++|..|+.-+.....-.-.+||++ ++++ ...--|..++-...|=.+-+-+
T Consensus 28 EeE~eeLr~EL~KvEeEI~TLrqvL~aKer~~~eLKrkLGit~l~elkqnlskg~~~vq~S~aY~gqKTsaa~s~~g~~i 107 (162)
T PF04201_consen 28 EEEREELRSELAKVEEEIQTLRQVLAAKERHCAELKRKLGITPLSELKQNLSKGWHDVQDSNAYKGQKTSAAFSSVGSAI 107 (162)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHCCchHHHHHHHHHHHhHhhhchhHHHHHHHHHHHHHHHHHH
Confidence 355678899999999999888877776666666777765 2222 2223333344444444444445
Q ss_pred HHHhhcCCcccccCCChhHHhHHHHHHHHHHHHH
Q psy2067 138 SLANESVPKEEVKDSNPHLKSLYEGLLMTDGNLK 171 (225)
Q Consensus 138 ERAL~~~~~~~~~~~~~~~~~l~~Gvemi~kqL~ 171 (225)
.|-+..+.+ .+.+++|=+.|.-++..+.
T Consensus 108 ~~Kl~dmrn------S~tFKSfEeKVg~a~~~vK 135 (162)
T PF04201_consen 108 SRKLGDMRN------SPTFKSFEEKVGSAYSNVK 135 (162)
T ss_pred HHHHHHHhc------chHHHhHHHHhccchhhhh
Confidence 555444443 2345555555555444433
No 102
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=35.71 E-value=1.5e+02 Score=20.50 Aligned_cols=34 Identities=18% Similarity=0.383 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2067 75 ELEDLKKQIEALNEKNSDLLDKYKRALADGENAR 108 (225)
Q Consensus 75 ~i~~L~~el~~leee~~elkdk~lR~~AEfEN~R 108 (225)
.+..|+..+..|..+...|+..+..+..++..++
T Consensus 27 ~~~~Le~~~~~L~~en~~L~~~~~~L~~~~~~L~ 60 (64)
T PF00170_consen 27 YIEELEEKVEELESENEELKKELEQLKKEIQSLK 60 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555555555555544444444443
No 103
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=35.55 E-value=3.9e+02 Score=26.58 Aligned_cols=39 Identities=18% Similarity=0.335 Sum_probs=24.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2067 72 IKEELEDLKKQIEALNEKNSDLLDKYKRALADGENARQR 110 (225)
Q Consensus 72 ~~~~i~~L~~el~~leee~~elkdk~lR~~AEfEN~RkR 110 (225)
+.+.+..|-.++.+++.++..+.....++++|.+.+|+|
T Consensus 57 P~DTlrTlva~~k~~r~~~~~l~~~N~~l~~eN~~L~~r 95 (472)
T TIGR03752 57 PADTLRTLVAEVKELRKRLAKLISENEALKAENERLQKR 95 (472)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 445666666666666666666666666666666666553
No 104
>PRK00295 hypothetical protein; Provisional
Probab=35.53 E-value=1.7e+02 Score=21.05 Aligned_cols=45 Identities=11% Similarity=0.119 Sum_probs=35.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2067 72 IKEELEDLKKQIEALNEKNSDLLDKYKRALADGENARQRFNKQLE 116 (225)
Q Consensus 72 ~~~~i~~L~~el~~leee~~elkdk~lR~~AEfEN~RkR~~KE~e 116 (225)
+++.+..|+.+++-.+.-+++|.+-+.+.+.+++-+++.+..=..
T Consensus 3 ~e~Ri~~LE~kla~qE~tie~Ln~~v~~Qq~~I~~L~~ql~~L~~ 47 (68)
T PRK00295 3 LEERVTELESRQAFQDDTIQALNDVLVEQQRVIERLQLQMAALIK 47 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456788999999999999999999998888888777766554333
No 105
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=35.47 E-value=1.9e+02 Score=31.27 Aligned_cols=116 Identities=14% Similarity=0.148 Sum_probs=70.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhhHHHHhhcCCcccccCCChhHH
Q psy2067 78 DLKKQIEALNEKNSDLLDKYKRALADGENARQRFNKQLEESKLYGIQSFCKDLLDIADTLSLANESVPKEEVKDSNPHLK 157 (225)
Q Consensus 78 ~L~~el~~leee~~elkdk~lR~~AEfEN~RkR~~KE~e~akk~aie~f~kdLLpViDnLERAL~~~~~~~~~~~~~~~~ 157 (225)
.++..+..++.++..+..-.+++..+|+.+++|...=..+..+ +..-.+.|+.++..+++=. ..
T Consensus 946 ~~~~~i~~le~~i~~lg~VN~~Aiee~e~~~~r~~~l~~~~~d--l~~a~~~l~~~i~~~d~~~--------------~~ 1009 (1163)
T COG1196 946 ELEREIERLEEEIEALGPVNLRAIEEYEEVEERYEELKSQRED--LEEAKEKLLEVIEELDKEK--------------RE 1009 (1163)
T ss_pred HHHHHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHH--------------HH
Confidence 6777888888888888888889999999999998654444332 2233444555555544432 34
Q ss_pred hHHHHHHHHHHHHHHHhcccCC-CceEeccCCCCCCCCCCccchhhcccCCeeee
Q psy2067 158 SLYEGLLMTDGNLKKHAHPVEY-PSVVIIPDSIAVMERISLEQSLSIFLANFSVE 211 (225)
Q Consensus 158 ~l~~Gvemi~kqL~~vLek~Gv-gv~~I~p~~~~~g~~FDP~~heAi~~~n~Vve 211 (225)
.+...|.-|.+.|..+|....= |--..... +...||+--+-+.+.|+|+-+.
T Consensus 1010 ~f~~~f~~In~~F~~if~~L~~GG~a~L~l~--~~dd~l~~Giei~a~ppgK~~~ 1062 (1163)
T COG1196 1010 RFKETFDKINENFSEIFKELFGGGTAELELT--EPDDPLTAGIEISARPPGKKLQ 1062 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCCeeEEEeC--CCCchhhcCcEEEEECCCCCcc
Confidence 6778888888888888877611 11222220 1122455344444467766443
No 106
>cd00890 Prefoldin Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.
Probab=34.62 E-value=1.6e+02 Score=22.53 Aligned_cols=45 Identities=18% Similarity=0.327 Sum_probs=35.0
Q ss_pred CcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2067 69 DPKIKEELEDLKKQIEALNEKNSDLLDKYKRALADGENARQRFNK 113 (225)
Q Consensus 69 ~~~~~~~i~~L~~el~~leee~~elkdk~lR~~AEfEN~RkR~~K 113 (225)
+-...+...-++..++.++++++++...+..+.+.+..++..+++
T Consensus 82 e~~~~eA~~~l~~r~~~l~~~~~~l~~~~~~~~~~~~~l~~~l~~ 126 (129)
T cd00890 82 EKSLEEAIEFLKKRLETLEKQIEKLEKQLEKLQDQITELQEELQQ 126 (129)
T ss_pred EecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334566677788888888888888888888888888888877654
No 107
>PF03670 UPF0184: Uncharacterised protein family (UPF0184); InterPro: IPR022788 This family of proteins has no known function.
Probab=34.51 E-value=1.6e+02 Score=22.45 Aligned_cols=40 Identities=23% Similarity=0.445 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2067 77 EDLKKQIEALNEKNSDLLDKYKRALADGENARQRFNKQLE 116 (225)
Q Consensus 77 ~~L~~el~~leee~~elkdk~lR~~AEfEN~RkR~~KE~e 116 (225)
..|..-+..|++..+.+..++.+++....-.|+-++.+..
T Consensus 36 D~Lns~LD~LE~rnD~l~~~L~~LLesnrq~R~e~~~~~~ 75 (83)
T PF03670_consen 36 DQLNSCLDHLEQRNDHLHAQLQELLESNRQIRLEFQEQLS 75 (83)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3444445556666666777777777766666666666554
No 108
>PRK10884 SH3 domain-containing protein; Provisional
Probab=34.49 E-value=1.6e+02 Score=25.75 Aligned_cols=44 Identities=14% Similarity=0.090 Sum_probs=0.0
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2067 71 KIKEELEDLKKQIEALNEKNSDLLDKYKRALADGENARQRFNKQ 114 (225)
Q Consensus 71 ~~~~~i~~L~~el~~leee~~elkdk~lR~~AEfEN~RkR~~KE 114 (225)
..+..+..|+++..+|++++..++.+..-+.|+.+..+++...+
T Consensus 129 ~~~~~~~~L~~~n~~L~~~l~~~~~~~~~l~~~~~~~~~~~~~~ 172 (206)
T PRK10884 129 QSDSVINGLKEENQKLKNQLIVAQKKVDAANLQLDDKQRTIIMQ 172 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 109
>PRK14159 heat shock protein GrpE; Provisional
Probab=34.40 E-value=3e+02 Score=23.56 Aligned_cols=61 Identities=18% Similarity=0.184 Sum_probs=35.9
Q ss_pred CCCcchhHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2067 67 NVDPKIKEELEDLKKQIEALNEKN----SDLLDKYKRALADGENARQRFNKQLEESKLYGIQSFC 127 (225)
Q Consensus 67 ~~~~~~~~~i~~L~~el~~leee~----~elkdk~lR~~AEfEN~RkR~~KE~e~akk~aie~f~ 127 (225)
|.+.--..+++.+++++.+++.++ +++.+--.|+..|.+.+++......-...--.+.+|-
T Consensus 23 ~~~~~~~~~i~~l~~e~~elkd~~lR~~AdfeN~rkR~~rE~e~~~~~a~~~~~~~LLpV~Dnle 87 (176)
T PRK14159 23 NLQNIEDVEQNKLQKDYDELKDKYMRANAEFENIKKRMEKEKLSAMAYANESFAKDLLDVLDALE 87 (176)
T ss_pred hHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhHHH
Confidence 333333445566666666554443 5666667788888888888776665544444444443
No 110
>PF04728 LPP: Lipoprotein leucine-zipper; InterPro: IPR006817 This repeating sequence, NAKVDQLSNDV, is found in the enterobacterial outer membrane lipoprotein LPP. The outer membrane lipoprotein is the most abundant protein in an Escherichia coli cell. The messenger RNA for the lipoprotein of the E. coli outer membrane codes for a putative precursor, prolipoprotein, which has 20 additional amino acid residues extending from the amino terminus of the lipoprotein.; GO: 0019867 outer membrane; PDB: 1JCC_A 2GUV_C 2GUS_A 1JCD_A 1KFM_A 1T8Z_D 1KFN_A 1EQ7_A.
Probab=34.36 E-value=1.7e+02 Score=20.71 Aligned_cols=32 Identities=13% Similarity=0.315 Sum_probs=14.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2067 72 IKEELEDLKKQIEALNEKNSDLLDKYKRALAD 103 (225)
Q Consensus 72 ~~~~i~~L~~el~~leee~~elkdk~lR~~AE 103 (225)
+..++..|..++..|..++..++....-++.|
T Consensus 8 Ls~dVq~L~~kvdqLs~dv~~lr~~v~~ak~E 39 (56)
T PF04728_consen 8 LSSDVQTLNSKVDQLSSDVNALRADVQAAKEE 39 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555555555555554444444433333
No 111
>PRK14148 heat shock protein GrpE; Provisional
Probab=33.96 E-value=3.2e+02 Score=23.79 Aligned_cols=60 Identities=20% Similarity=0.264 Sum_probs=40.1
Q ss_pred cchhHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2067 70 PKIKEELEDLKKQIEALNEKN----SDLLDKYKRALADGENARQRFNKQLEESKLYGIQSFCKD 129 (225)
Q Consensus 70 ~~~~~~i~~L~~el~~leee~----~elkdk~lR~~AEfEN~RkR~~KE~e~akk~aie~f~kd 129 (225)
+.+..+++.|++++++++..+ +++.+--.|+..|.+..+++.....-...--.+.+|-+.
T Consensus 43 ~~l~~~l~~l~~e~~elkd~~lR~~Ae~eN~rKR~~rE~e~~~~~a~~~~~~~LLpV~DnlerA 106 (195)
T PRK14148 43 ERAKDTIKELEDSCDQFKDEALRAKAEMENIRKRAERDVSNARKFGIEKFAKELLPVIDSIEQA 106 (195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhHHHHH
Confidence 446667777777777766554 566777778888888888887766655544444444433
No 112
>PF11500 Cut12: Spindle pole body formation-associated protein; InterPro: IPR021589 This is the central coiled-coil region of cut12 also found in other fungi, barring S. cerevisiae. The full protein has two predicted coiled-coil regions, and one consensus phosphorylation site for p34cdc2 and two for MAP kinase. During Schizosaccharomyces japonicus yFS275 mitosis, the duplicated spindle pole bodies (SPBs) nucleate microtubule arrays that interdigitate to form the mitotic spindle. Cut12 is localised to the SPB throughout the cell cycle, predominantly around the inner face of the interphase SPB, adjacent to the nucleus []. Cut12 associates with Fin1 and is important in this context for the activity of Plo1 [].
Probab=33.93 E-value=53 Score=27.69 Aligned_cols=22 Identities=18% Similarity=0.179 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q psy2067 100 ALADGENARQRFNKQLEESKLY 121 (225)
Q Consensus 100 ~~AEfEN~RkR~~KE~e~akk~ 121 (225)
=.++|++|+.++.+|+....+|
T Consensus 71 WK~eFe~Y~~~a~~Em~KLi~y 92 (152)
T PF11500_consen 71 WKEEFESYHEKAEKEMEKLIKY 92 (152)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4577899999999999998553
No 113
>PRK11637 AmiB activator; Provisional
Probab=33.82 E-value=2.2e+02 Score=26.95 Aligned_cols=35 Identities=11% Similarity=0.076 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2067 80 KKQIEALNEKNSDLLDKYKRALADGENARQRFNKQ 114 (225)
Q Consensus 80 ~~el~~leee~~elkdk~lR~~AEfEN~RkR~~KE 114 (225)
..++..++.++..+..++..+.+++...++++.+.
T Consensus 88 ~~~i~~~~~~i~~~~~ei~~l~~eI~~~q~~l~~~ 122 (428)
T PRK11637 88 SRKLRETQNTLNQLNKQIDELNASIAKLEQQQAAQ 122 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333334444444444444444444444444333
No 114
>PF02388 FemAB: FemAB family; InterPro: IPR003447 The femAB operon codes for two nearly identical approximately 50kDa proteins involved in the formation of the Staphylococcal pentaglycine interpeptide bridge in peptidoglycan []. These proteins are also considered as a factor influencing the level of methicillin resistance [].; GO: 0016755 transferase activity, transferring amino-acyl groups; PDB: 1XE4_A 1NE9_A 3GKR_A 1XIX_A 1P4N_A 1XF8_A 1LRZ_A.
Probab=33.78 E-value=2.9e+02 Score=26.20 Aligned_cols=50 Identities=30% Similarity=0.374 Sum_probs=33.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2067 72 IKEELEDLKKQIEALNEKNSDLLD------KYKRALADGENARQRFNKQLEESKLY 121 (225)
Q Consensus 72 ~~~~i~~L~~el~~leee~~elkd------k~lR~~AEfEN~RkR~~KE~e~akk~ 121 (225)
..+-++.++.++.+++++++++.+ +..+...+.++-..+.++++.++..+
T Consensus 240 ~~~~~~~l~~~~~~~~~~i~~l~~~l~~~~k~~~k~~~~~~q~~~~~k~~~~~~~~ 295 (406)
T PF02388_consen 240 GKEYLESLQEKLEKLEKEIEKLEEKLEKNPKKKNKLKELEEQLASLEKRIEEAEEL 295 (406)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHH-THHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 344556666677777777766666 45667777777777777777776643
No 115
>PF14388 DUF4419: Domain of unknown function (DUF4419)
Probab=33.50 E-value=87 Score=28.84 Aligned_cols=42 Identities=19% Similarity=0.271 Sum_probs=34.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHhhhHHhhHHHHhhcCC
Q psy2067 100 ALADGENARQRFNKQLEESKLYG--IQSFCKDLLDIADTLSLANESVP 145 (225)
Q Consensus 100 ~~AEfEN~RkR~~KE~e~akk~a--ie~f~kdLLpViDnLERAL~~~~ 145 (225)
...|.++++.|+++=. +|+ ...++..|.||+|.|-++.+.-+
T Consensus 143 t~~DW~~L~~r~~~L~----efg~~~~~w~~~L~pIl~~fi~s~~~~~ 186 (299)
T PF14388_consen 143 TREDWEKLLERLDRLK----EFGEEMEWWASLLRPILDRFIASFDGPP 186 (299)
T ss_pred cHHHHHHHHHHHHHHH----HhCccHHHHHHHHHHHHHHHHHHhcCCC
Confidence 3578888888876644 477 99999999999999999987644
No 116
>cd07623 BAR_SNX1_2 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexins 1 and 2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. This subfamily consists of SNX1, SNX2, and similar proteins. SNX1 and SNX2 are components of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi. The retromer consists of a cargo-recognition subcomplex and a subcomplex formed by a dimer of sorting nexins (SNX1 and/or SNX2), wh
Probab=33.20 E-value=3.2e+02 Score=23.64 Aligned_cols=91 Identities=14% Similarity=0.187 Sum_probs=49.4
Q ss_pred Cccccchhhhhhhhhhhhcchh---hhhcccCCCCCCCCCCCCcccCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2067 22 IPQTLSAQSNVKFLWSKAENKK---EESESKKDDSDSTASSSSTESTSNVDPKIKEELEDLKKQIEALNEKNSDLLDKYK 98 (225)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~~el~~leee~~elkdk~l 98 (225)
|+.++++....-..|+..+.+- .+...|=.. + + ...++..++.++.+++......+.+|-
T Consensus 111 vk~~f~~R~~a~~~~q~a~~~l~kkr~~~~Kl~~---------~-~-------~~~K~~~~~~ev~~~e~~~~~a~~~fe 173 (224)
T cd07623 111 IKDVFHERVKVWQNWQNAQQTLTKKREAKAKLEL---------S-G-------RTDKLDQAQQEIKEWEAKVDRGQKEFE 173 (224)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---------c-C-------ChhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7788888877777788774422 222222000 0 0 013666777777777766666555555
Q ss_pred ----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH
Q psy2067 99 ----RALADGENARQRFNKQLEESKLYGIQSFCKDLLDI 133 (225)
Q Consensus 99 ----R~~AEfEN~RkR~~KE~e~akk~aie~f~kdLLpV 133 (225)
+...|+..|.++ +..-.+..+..|+...+..
T Consensus 174 ~is~~~k~El~rF~~e----rv~dfk~~l~~~le~~i~~ 208 (224)
T cd07623 174 EISKTIKKEIERFEKN----RVKDFKDIIIKYLESLLNT 208 (224)
T ss_pred HHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHH
Confidence 445566655444 4444444455555555443
No 117
>PRK03947 prefoldin subunit alpha; Reviewed
Probab=33.06 E-value=2.1e+02 Score=22.66 Aligned_cols=46 Identities=17% Similarity=0.222 Sum_probs=37.3
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2067 71 KIKEELEDLKKQIEALNEKNSDLLDKYKRALADGENARQRFNKQLE 116 (225)
Q Consensus 71 ~~~~~i~~L~~el~~leee~~elkdk~lR~~AEfEN~RkR~~KE~e 116 (225)
.+.+.++-++..+..+.+.++.+...+......++.++..+.+-..
T Consensus 91 ~~~eA~~~l~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~~l~~l~~ 136 (140)
T PRK03947 91 DLDEAIEILDKRKEELEKALEKLEEALQKLASRIAQLAQELQQLQQ 136 (140)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5677788888888889888888888888888888888887766443
No 118
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=33.04 E-value=3e+02 Score=23.38 Aligned_cols=68 Identities=18% Similarity=0.238 Sum_probs=0.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhhHHHH
Q psy2067 72 IKEELEDLKKQIEALNEKNSDLLDKYKRALADGENARQRFNKQLEESKLYGIQSFCKDLLDIADTLSLA 140 (225)
Q Consensus 72 ~~~~i~~L~~el~~leee~~elkdk~lR~~AEfEN~RkR~~KE~e~akk~aie~f~kdLLpViDnLERA 140 (225)
+...++.+...+..++..+..++.++..+...-..++-|...-.....-...-.-+. +-++.+.|+|.
T Consensus 103 l~~~~~~~~~~~~~l~~~l~~l~~kl~e~k~k~~~l~ar~~~a~a~~~~~~~~~~~~-~~~a~~~~er~ 170 (221)
T PF04012_consen 103 LEQQLDQAEAQVEKLKEQLEELEAKLEELKSKREELKARENAAKAQKKVNEALASFS-VSSAMDSFERM 170 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC-ccchHHHHHHH
No 119
>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea. Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st
Probab=32.80 E-value=54 Score=25.07 Aligned_cols=44 Identities=25% Similarity=0.394 Sum_probs=31.2
Q ss_pred CCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2067 65 TSNVDPKIKEELEDLKKQIEALNEKNSDLLDKYKRALADGENAR 108 (225)
Q Consensus 65 ~~~~~~~~~~~i~~L~~el~~leee~~elkdk~lR~~AEfEN~R 108 (225)
..++...++..++.++..+..++++++.+..++..+.+++..+.
T Consensus 61 ~~ea~~~Le~~~e~le~~i~~l~~~~~~l~~~~~elk~~l~~~~ 104 (105)
T cd00632 61 KEEARTELKERLETIELRIKRLERQEEDLQEKLKELQEKIQQAQ 104 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34455667777777778888888877777777777777766553
No 120
>KOG1962|consensus
Probab=32.77 E-value=1.3e+02 Score=26.69 Aligned_cols=41 Identities=20% Similarity=0.289 Sum_probs=28.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2067 72 IKEELEDLKKQIEALNEKNSDLLDKYKRALADGENARQRFN 112 (225)
Q Consensus 72 ~~~~i~~L~~el~~leee~~elkdk~lR~~AEfEN~RkR~~ 112 (225)
+.++...+.+++..++++++....++..++.+.++++|..+
T Consensus 149 ~~~~~~~~~~~~~kL~~el~~~~~~Le~~~~~~~al~Kq~e 189 (216)
T KOG1962|consen 149 LEEENDKLKADLEKLETELEKKQKKLEKAQKKVDALKKQSE 189 (216)
T ss_pred hhhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55666667777777777777777777777777777776654
No 121
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=31.76 E-value=3.3e+02 Score=28.51 Aligned_cols=19 Identities=16% Similarity=0.118 Sum_probs=12.7
Q ss_pred HHHHhhhHHhhHHHHhhcC
Q psy2067 126 FCKDLLDIADTLSLANESV 144 (225)
Q Consensus 126 f~kdLLpViDnLERAL~~~ 144 (225)
.+.+|+.|-+.++.|+..+
T Consensus 526 ~l~dli~v~~~y~~Aie~~ 544 (1164)
T TIGR02169 526 TVAQLGSVGERYATAIEVA 544 (1164)
T ss_pred cHHHhcCcCHHHHHHHHHH
Confidence 3666667777777776654
No 122
>PRK14153 heat shock protein GrpE; Provisional
Probab=31.61 E-value=3.5e+02 Score=23.54 Aligned_cols=59 Identities=24% Similarity=0.239 Sum_probs=38.7
Q ss_pred CcchhHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2067 69 DPKIKEELEDLKKQIEALNEKN----SDLLDKYKRALADGENARQRFNKQLEESKLYGIQSFC 127 (225)
Q Consensus 69 ~~~~~~~i~~L~~el~~leee~----~elkdk~lR~~AEfEN~RkR~~KE~e~akk~aie~f~ 127 (225)
..+...+++.+++++.+++.++ +++.+--.|+..|.+.+++......-...--.+.+|-
T Consensus 35 ~~~~~~ei~~l~~e~~elkd~~lR~~AEfeN~rKR~~kE~e~~~~~a~~~~~~~LLpv~DnLe 97 (194)
T PRK14153 35 DSTADSETEKCREEIESLKEQLFRLAAEFDNFRKRTAREMEENRKFVLEQVLLDLLEVTDNFE 97 (194)
T ss_pred cccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhHHH
Confidence 4556667777777777665554 5666777788888888888877665544444444443
No 123
>PRK14151 heat shock protein GrpE; Provisional
Probab=31.48 E-value=3.3e+02 Score=23.20 Aligned_cols=57 Identities=21% Similarity=0.305 Sum_probs=36.6
Q ss_pred cchhHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2067 70 PKIKEELEDLKKQIEALNEKN----SDLLDKYKRALADGENARQRFNKQLEESKLYGIQSF 126 (225)
Q Consensus 70 ~~~~~~i~~L~~el~~leee~----~elkdk~lR~~AEfEN~RkR~~KE~e~akk~aie~f 126 (225)
..+..+++.+++++++++.+. +++.+--.|+..|.+++++......-...--.+.+|
T Consensus 23 ~~l~~~i~~le~e~~el~d~~lR~~Ae~eN~rkR~~kE~e~~~~~a~~~~~~~LLpv~Dnl 83 (176)
T PRK14151 23 DDLTARVQELEEQLAAAKDQSLRAAADLQNVRRRAEQDVEKAHKFALEKFAGDLLPVVDSL 83 (176)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhHH
Confidence 334456667777777766554 566777778888888888887665544443334443
No 124
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=31.42 E-value=1.3e+02 Score=25.35 Aligned_cols=34 Identities=12% Similarity=0.137 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2067 81 KQIEALNEKNSDLLDKYKRALADGENARQRFNKQ 114 (225)
Q Consensus 81 ~el~~leee~~elkdk~lR~~AEfEN~RkR~~KE 114 (225)
++...+++++++++.++....+|.+.+|++.+.-
T Consensus 154 ~~~~~~~~ei~~lk~el~~~~~~~~~LkkQ~~~l 187 (192)
T PF05529_consen 154 EENKKLSEEIEKLKKELEKKEKEIEALKKQSEGL 187 (192)
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444555666666666666788888887776543
No 125
>PRK14157 heat shock protein GrpE; Provisional
Probab=31.12 E-value=3.9e+02 Score=23.93 Aligned_cols=59 Identities=14% Similarity=0.116 Sum_probs=40.1
Q ss_pred cchhHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2067 70 PKIKEELEDLKKQIEALNEKN----SDLLDKYKRALADGENARQRFNKQLEESKLYGIQSFCK 128 (225)
Q Consensus 70 ~~~~~~i~~L~~el~~leee~----~elkdk~lR~~AEfEN~RkR~~KE~e~akk~aie~f~k 128 (225)
..+..++..|++++.+++.++ .++.+--.|+..|.+.++++....+-...--.+.+|-+
T Consensus 80 ~~~~~~l~~le~e~~e~kd~llR~~AEfeNyRKR~~rE~e~~~~~a~~~~~~dLLpvlDnLeR 142 (227)
T PRK14157 80 DDTLTPLGQAKKEAAEYLEALQRERAEFINYRNRTQKEQDRFRQHGIIDVLTALLPALDDIDR 142 (227)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHH
Confidence 346667778888887776554 56777778888999999888876655544444444333
No 126
>KOG3647|consensus
Probab=30.63 E-value=1.5e+02 Score=27.55 Aligned_cols=33 Identities=24% Similarity=0.345 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2067 81 KQIEALNEKNSDLLDKYKRALADGENARQRFNK 113 (225)
Q Consensus 81 ~el~~leee~~elkdk~lR~~AEfEN~RkR~~K 113 (225)
.++....-....|..++.|-.+|++-.|+|++.
T Consensus 126 ~~Lnnvasdea~L~~Kierrk~ElEr~rkRle~ 158 (338)
T KOG3647|consen 126 AQLNNVASDEAALGSKIERRKAELERTRKRLEA 158 (338)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333344456777888888888888888653
No 127
>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility. Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].
Probab=30.56 E-value=3.4e+02 Score=23.16 Aligned_cols=36 Identities=22% Similarity=0.359 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2067 78 DLKKQIEALNEKNSDLLDKYKRALADGENARQRFNK 113 (225)
Q Consensus 78 ~L~~el~~leee~~elkdk~lR~~AEfEN~RkR~~K 113 (225)
.+..++..++.+..+|..+...+.+..+...+|...
T Consensus 124 ~l~~~i~~L~~e~~~L~~~~~~l~~~~e~~ek~~~e 159 (189)
T PF10211_consen 124 ELEEEIEELEEEKEELEKQVQELKNKCEQLEKREEE 159 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555555555555555555555443
No 128
>cd07596 BAR_SNX The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=30.27 E-value=3.1e+02 Score=22.45 Aligned_cols=45 Identities=11% Similarity=0.269 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHH
Q psy2067 74 EELEDLKKQIEALNEKNSDLLDKYKRAL----ADGENARQRFNKQLEES 118 (225)
Q Consensus 74 ~~i~~L~~el~~leee~~elkdk~lR~~----AEfEN~RkR~~KE~e~a 118 (225)
.++..++.++..++..+...++++.+.- .|+..|.+....++..+
T Consensus 145 ~ki~~l~~~i~~~e~~~~~~~~~~~~i~~~~~~El~~f~~~~~~dlk~~ 193 (218)
T cd07596 145 AKVEELEEELEEAESALEEARKRYEEISERLKEELKRFHEERARDLKAA 193 (218)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4677777777777777776666666444 44444444444444333
No 129
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=30.06 E-value=5.3e+02 Score=26.92 Aligned_cols=12 Identities=17% Similarity=-0.022 Sum_probs=7.6
Q ss_pred cCCeeeeeeccc
Q psy2067 205 LANFSVEWLQSP 216 (225)
Q Consensus 205 ~~n~VveV~QkG 216 (225)
..|+|+++-.+|
T Consensus 638 ~~g~v~~i~~~~ 649 (771)
T TIGR01069 638 QKGKIVQILGGN 649 (771)
T ss_pred ceEEEEEEcCCC
Confidence 457888875434
No 130
>PF10779 XhlA: Haemolysin XhlA; InterPro: IPR019715 Haemolysin XhlA is a cell-surface associated haemolysin that lyses the two most prevalent types of insect immune cells (granulocytes and plasmatocytes) as well as rabbit and horse erythrocytes [].
Probab=30.05 E-value=2.1e+02 Score=20.44 Aligned_cols=37 Identities=14% Similarity=0.241 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2067 75 ELEDLKKQIEALNEKNSDLLDKYKRALADGENARQRF 111 (225)
Q Consensus 75 ~i~~L~~el~~leee~~elkdk~lR~~AEfEN~RkR~ 111 (225)
++..++.++...++.+..+...-.+...+..|..+++
T Consensus 7 ~l~~ie~~l~~~~~~i~~lE~~~~~~e~~i~~~~~~l 43 (71)
T PF10779_consen 7 KLNRIETKLDNHEERIDKLEKRDAANEKDIKNLNKQL 43 (71)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444444444333333333444444444443
No 131
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=29.98 E-value=5.2e+02 Score=26.85 Aligned_cols=10 Identities=10% Similarity=0.082 Sum_probs=4.3
Q ss_pred hhHHhhHHHH
Q psy2067 131 LDIADTLSLA 140 (225)
Q Consensus 131 LpViDnLERA 140 (225)
+|++-.=||.
T Consensus 627 ~P~LS~AEr~ 636 (717)
T PF10168_consen 627 LPVLSEAERE 636 (717)
T ss_pred CCCCCHHHHH
Confidence 4444444444
No 132
>KOG4603|consensus
Probab=29.91 E-value=3.8e+02 Score=23.41 Aligned_cols=22 Identities=9% Similarity=0.268 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q psy2067 92 DLLDKYKRALADGENARQRFNK 113 (225)
Q Consensus 92 elkdk~lR~~AEfEN~RkR~~K 113 (225)
++......+..+..|||+|+..
T Consensus 120 emQe~i~~L~kev~~~~erl~~ 141 (201)
T KOG4603|consen 120 EMQEEIQELKKEVAGYRERLKN 141 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555666666677776653
No 133
>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility. Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].
Probab=29.84 E-value=3.5e+02 Score=23.05 Aligned_cols=36 Identities=25% Similarity=0.422 Sum_probs=24.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2067 72 IKEELEDLKKQIEALNEKNSDLLDKYKRALADGENA 107 (225)
Q Consensus 72 ~~~~i~~L~~el~~leee~~elkdk~lR~~AEfEN~ 107 (225)
+..++..|+.++..|+.++.+++.++-.+...++..
T Consensus 125 l~~~i~~L~~e~~~L~~~~~~l~~~~e~~ek~~~e~ 160 (189)
T PF10211_consen 125 LEEEIEELEEEKEELEKQVQELKNKCEQLEKREEEL 160 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445777788888888888887777766655555443
No 134
>TIGR03545 conserved hypothetical protein TIGR03545. This model represents a relatively rare but broadly distributed uncharacterized protein family, distributed in 1-2 percent of bacterial genomes, all of which have outer membranes. In many of these genomes, it is part of a two-gene pair.
Probab=29.73 E-value=2.7e+02 Score=27.99 Aligned_cols=46 Identities=24% Similarity=0.328 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2067 76 LEDLKKQIEALNEKNSDLLDKYKRALADGENARQRFNKQLEESKLY 121 (225)
Q Consensus 76 i~~L~~el~~leee~~elkdk~lR~~AEfEN~RkR~~KE~e~akk~ 121 (225)
+....+++.+++.+++..++++..+..++++-+++++++..+.++.
T Consensus 214 i~~~~~e~d~lk~e~~~~~~~i~~~~~~l~~~~~~~~~~~~~lk~a 259 (555)
T TIGR03545 214 LQKIKEEFDKLKKEGKADKQKIKSAKNDLQNDKKQLKADLAELKKA 259 (555)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhc
Confidence 3344455555556666666666666666666666666666555543
No 135
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=29.51 E-value=2.1e+02 Score=20.39 Aligned_cols=34 Identities=12% Similarity=0.120 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2067 80 KKQIEALNEKNSDLLDKYKRALADGENARQRFNK 113 (225)
Q Consensus 80 ~~el~~leee~~elkdk~lR~~AEfEN~RkR~~K 113 (225)
+...-..+.++.+...+..-+.+++++++++++.
T Consensus 24 k~~n~~~e~kLqeaE~rn~eL~~ei~~L~~e~ee 57 (61)
T PF08826_consen 24 KSANLAFESKLQEAEKRNRELEQEIERLKKEMEE 57 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333344455555555555566666666666543
No 136
>KOG4191|consensus
Probab=29.19 E-value=3.2e+02 Score=27.22 Aligned_cols=58 Identities=19% Similarity=0.256 Sum_probs=40.9
Q ss_pred CCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHH
Q psy2067 68 VDPKIKEELEDLKKQIEALNEKNSDLLDKYKRAL------ADGENARQRFNKQLEESKLYGIQS 125 (225)
Q Consensus 68 ~~~~~~~~i~~L~~el~~leee~~elkdk~lR~~------AEfEN~RkR~~KE~e~akk~aie~ 125 (225)
.+|.+..++..++++|..+-+...+.+.+++++. .||.|.-.-+.+++++++.--+..
T Consensus 402 ddDEvlaeLR~lqaeLk~vS~~N~k~k~~Ll~la~eE~a~qe~~q~lddlDkqI~qaYvKr~r~ 465 (516)
T KOG4191|consen 402 DDDEVLAELRKLQAELKAVSAHNRKKKHDLLRLAPEEMARQEFQQVLDDLDKQIEQAYVKRNRS 465 (516)
T ss_pred chHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3677777888888888888777777777777654 456666666677777777554433
No 137
>KOG2856|consensus
Probab=28.96 E-value=5.6e+02 Score=25.06 Aligned_cols=51 Identities=20% Similarity=0.297 Sum_probs=43.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2067 74 EELEDLKKQIEALNEKNSDLLDKYKRALADGENARQRFNKQLEESKLYGIQ 124 (225)
Q Consensus 74 ~~i~~L~~el~~leee~~elkdk~lR~~AEfEN~RkR~~KE~e~akk~aie 124 (225)
+.+..|+..++++++++..-+.+|..++||+.-|.-++-..++...+.-.+
T Consensus 177 eq~kKlqdrveK~k~evqktkekYektl~el~~yt~~YmE~MeqvFe~CQ~ 227 (472)
T KOG2856|consen 177 EQLKKLQDRVEKCKQEVQKTKEKYEKTLAELNKYTPVYMEDMEQVFEQCQQ 227 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHH
Confidence 366789999999999999999999999999999998888888776655443
No 138
>TIGR02977 phageshock_pspA phage shock protein A. Members of this family are the phage shock protein PspA, from the phage shock operon. This is a narrower family than the set of PspA and its homologs, sometimes several in a genome, as described by PFAM model pfam04012. PspA appears to maintain the protonmotive force under stress conditions that include overexpression of certain phage secretins, heat shock, ethanol, and protein export defects.
Probab=28.93 E-value=3.8e+02 Score=23.12 Aligned_cols=38 Identities=24% Similarity=0.289 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2067 75 ELEDLKKQIEALNEKNSDLLDKYKRALADGENARQRFN 112 (225)
Q Consensus 75 ~i~~L~~el~~leee~~elkdk~lR~~AEfEN~RkR~~ 112 (225)
....|+..+..++..+..++.++..+...++.+|.+-.
T Consensus 100 ~~~~l~~~~~~~~~~v~~l~~~l~~L~~ki~~~k~k~~ 137 (219)
T TIGR02977 100 LAEALERELAAVEETLAKLQEDIAKLQAKLAEARARQK 137 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556666666666677777777777777766655533
No 139
>PF03194 LUC7: LUC7 N_terminus; InterPro: IPR004882 This family consists of several LUC7 protein homologues that are restricted to eukaryotes. LUC7 has been shown to be a U1 snRNA associated protein [] with a role in splice site recognition []. The entry contains human and mouse LUC7 like (LUC7L) proteins [] and human cisplatin resistance-associated overexpressed protein (CROP) [].
Probab=28.72 E-value=4.3e+02 Score=23.68 Aligned_cols=94 Identities=17% Similarity=0.273 Sum_probs=58.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHH---HHHHHHHHHHH------------HHHHHHHHhhh
Q psy2067 73 KEELEDLKKQIEALNEKNSDLLD-----KYKRALADGENARQR---FNKQLEESKLY------------GIQSFCKDLLD 132 (225)
Q Consensus 73 ~~~i~~L~~el~~leee~~elkd-----k~lR~~AEfEN~RkR---~~KE~e~akk~------------aie~f~kdLLp 132 (225)
...+..|..+|..+-++++.+.. .-..+.++.+.++.- ..++....... -+=.++..+|-
T Consensus 122 ~~~i~~l~~~I~~ll~~aE~LGeeG~VdeA~~~~~~~e~Lk~ek~~le~~~~~~~~~~~~~~~~~~qkl~VCeVCGA~Ls 201 (254)
T PF03194_consen 122 AEKIDELDEKIGELLKEAEELGEEGDVDEAQKLMEEVEKLKEEKEELEKELEEYRNSIENSAQSQQQKLEVCEVCGAFLS 201 (254)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhcccccCccchhhhhhHHh
Confidence 56777888888887777776642 344455555554433 23311122221 22346779999
Q ss_pred HHhhHHHHhhcCCcccccCCChhHHhHHHHHHHHHHHHHHHhccc
Q psy2067 133 IADTLSLANESVPKEEVKDSNPHLKSLYEGLLMTDGNLKKHAHPV 177 (225)
Q Consensus 133 ViDnLERAL~~~~~~~~~~~~~~~~~l~~Gvemi~kqL~~vLek~ 177 (225)
+.|+-.|--.|..- -++-|+..|...+..+-+..
T Consensus 202 ~~D~d~RladH~~G-----------K~HlGy~~IR~~l~el~e~~ 235 (254)
T PF03194_consen 202 VGDNDRRLADHFGG-----------KQHLGYAKIREKLKELKEKR 235 (254)
T ss_pred ccchHHHHHHHhcc-----------chhhhHHHHHHHHHHHHHHH
Confidence 99999998888652 36778888877766665443
No 140
>PF08946 Osmo_CC: Osmosensory transporter coiled coil; InterPro: IPR015041 The osmosensory transporter coiled coil is a C-terminal domain found in various bacterial osmoprotective transporters, such as ProP, Proline/betaine transporter, Proline permease 2 and the citrate proton symporters. It adopts an antiparallel coiled-coil structure, and is essential for osmosensory and osmoprotectant transporter function []. ; PDB: 1R48_B.
Probab=28.70 E-value=1.2e+02 Score=20.62 Aligned_cols=24 Identities=33% Similarity=0.630 Sum_probs=11.8
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHH
Q psy2067 71 KIKEELEDLKKQIEALNEKNSDLL 94 (225)
Q Consensus 71 ~~~~~i~~L~~el~~leee~~elk 94 (225)
.++..++.+.++|++|+++...|-
T Consensus 16 ~IEqkiedid~qIaeLe~KR~~Lv 39 (46)
T PF08946_consen 16 NIEQKIEDIDEQIAELEAKRQRLV 39 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHhHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555555444433
No 141
>PF07798 DUF1640: Protein of unknown function (DUF1640); InterPro: IPR024461 This family consists of uncharacterised proteins.
Probab=28.25 E-value=3.5e+02 Score=22.54 Aligned_cols=47 Identities=11% Similarity=0.284 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2067 74 EELEDLKKQIEALN-EKNSDLLDKYKRALADGENARQRFNKQLEESKL 120 (225)
Q Consensus 74 ~~i~~L~~el~~le-ee~~elkdk~lR~~AEfEN~RkR~~KE~e~akk 120 (225)
..+.+|+.++...+ .+...++....++.+|++.++.++..++...+.
T Consensus 58 a~~~eLr~el~~~~k~~~~~lr~~~e~L~~eie~l~~~L~~ei~~l~a 105 (177)
T PF07798_consen 58 AAIAELRSELQNSRKSEFAELRSENEKLQREIEKLRQELREEINKLRA 105 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444332 334566667777777777777777777766554
No 142
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=28.03 E-value=5e+02 Score=27.13 Aligned_cols=14 Identities=7% Similarity=-0.192 Sum_probs=9.2
Q ss_pred cCCeeeeeecccch
Q psy2067 205 LANFSVEWLQSPLA 218 (225)
Q Consensus 205 ~~n~VveV~QkGY~ 218 (225)
..|+|+++-.+|.+
T Consensus 650 ~~g~v~~i~~~~~~ 663 (782)
T PRK00409 650 QKGEVLSIPDDKEA 663 (782)
T ss_pred ceEEEEEEcCCCeE
Confidence 46888888655543
No 143
>KOG1853|consensus
Probab=27.98 E-value=4.9e+02 Score=24.14 Aligned_cols=26 Identities=15% Similarity=0.250 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHhhhHHhhHHHHhhc
Q psy2067 118 SKLYGIQSFCKDLLDIADTLSLANES 143 (225)
Q Consensus 118 akk~aie~f~kdLLpViDnLERAL~~ 143 (225)
+.+-...+.++.|=-.-|+|+||-.+
T Consensus 105 aikeql~kyiReLEQaNDdLErakRa 130 (333)
T KOG1853|consen 105 AIKEQLRKYIRELEQANDDLERAKRA 130 (333)
T ss_pred HHHHHHHHHHHHHHHhccHHHHhhhh
Confidence 34455667777888888999988443
No 144
>PRK14156 heat shock protein GrpE; Provisional
Probab=27.65 E-value=3.9e+02 Score=22.86 Aligned_cols=48 Identities=17% Similarity=0.254 Sum_probs=30.1
Q ss_pred hhHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2067 72 IKEELEDLKKQIEALNEKN----SDLLDKYKRALADGENARQRFNKQLEESK 119 (225)
Q Consensus 72 ~~~~i~~L~~el~~leee~----~elkdk~lR~~AEfEN~RkR~~KE~e~ak 119 (225)
...+++.+++++.+++.+. +++.+--.|+..|.++.+++.....-...
T Consensus 32 ~~~~l~~l~~e~~elkd~~lR~~AEfeN~rKR~~rE~e~~~~~a~~~~~~~L 83 (177)
T PRK14156 32 EKSELELANERADEFENKYLRAHAEMQNIQRRANEERQQLQRYRSQDLAKAI 83 (177)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445566666666554443 45666667888888888887766554433
No 145
>PF01920 Prefoldin_2: Prefoldin subunit; InterPro: IPR002777 Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal beta subunit, eukaryotic prefoldin subunits 1, 2, 4 and 6. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 2ZDI_B 3AEI_B 2ZQM_A 1FXK_A.
Probab=27.36 E-value=2.5e+02 Score=20.58 Aligned_cols=39 Identities=21% Similarity=0.345 Sum_probs=25.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2067 73 KEELEDLKKQIEALNEKNSDLLDKYKRALADGENARQRF 111 (225)
Q Consensus 73 ~~~i~~L~~el~~leee~~elkdk~lR~~AEfEN~RkR~ 111 (225)
.+-...|+..++.++.+++.+......+...+.+++..+
T Consensus 61 ~~~~~~L~~~~~~~~~~i~~l~~~~~~l~~~l~~~~~~l 99 (106)
T PF01920_consen 61 EEAIEELEERIEKLEKEIKKLEKQLKYLEKKLKELKKKL 99 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566666777777777777777766776666666544
No 146
>PRK14140 heat shock protein GrpE; Provisional
Probab=27.34 E-value=4.1e+02 Score=23.01 Aligned_cols=59 Identities=17% Similarity=0.316 Sum_probs=39.5
Q ss_pred CCcchhHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2067 68 VDPKIKEELEDLKKQIEALNEKN----SDLLDKYKRALADGENARQRFNKQLEESKLYGIQSF 126 (225)
Q Consensus 68 ~~~~~~~~i~~L~~el~~leee~----~elkdk~lR~~AEfEN~RkR~~KE~e~akk~aie~f 126 (225)
..+.+..+++.+++++.+++..+ +++.+--.|+..|.++.++......-...--.+.+|
T Consensus 38 ~~~~l~~~i~~l~~ei~elkd~~lR~~Ae~eN~rkR~~rE~~~~~~~a~~~~~~~LLpvlDnL 100 (191)
T PRK14140 38 LLDEEQAKIAELEAKLDELEERYLRLQADFENYKRRIQKENEAAEKYRAQSLASDLLPALDNF 100 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34447777888888887776554 567777778888888888877666554444344433
No 147
>PF12958 DUF3847: Protein of unknown function (DUF3847); InterPro: IPR024215 This entry represents a family of uncharacterised proteins that were found by clustering human gut metagenomic sequences [].
Probab=27.30 E-value=2.8e+02 Score=21.12 Aligned_cols=28 Identities=29% Similarity=0.305 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2067 76 LEDLKKQIEALNEKNSDLLDKYKRALAD 103 (225)
Q Consensus 76 i~~L~~el~~leee~~elkdk~lR~~AE 103 (225)
++.|+++++..++++.....+..++..-
T Consensus 3 Le~l~~e~e~~~~kl~q~e~~~k~L~nr 30 (86)
T PF12958_consen 3 LEELQAEIEKAEKKLEQAEHKIKQLENR 30 (86)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666666666666665555555433
No 148
>PRK14127 cell division protein GpsB; Provisional
Probab=27.08 E-value=2.2e+02 Score=22.55 Aligned_cols=36 Identities=19% Similarity=0.298 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2067 77 EDLKKQIEALNEKNSDLLDKYKRALADGENARQRFN 112 (225)
Q Consensus 77 ~~L~~el~~leee~~elkdk~lR~~AEfEN~RkR~~ 112 (225)
+.+-..++.+.+++.+|++++.++.+....++.|..
T Consensus 33 d~V~~dye~l~~e~~~Lk~e~~~l~~~l~e~~~~~~ 68 (109)
T PRK14127 33 DDVIKDYEAFQKEIEELQQENARLKAQVDELTKQVS 68 (109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 334445556666666666667777777777776665
No 149
>PRK14144 heat shock protein GrpE; Provisional
Probab=27.07 E-value=4.3e+02 Score=23.12 Aligned_cols=59 Identities=19% Similarity=0.144 Sum_probs=39.9
Q ss_pred chhHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2067 71 KIKEELEDLKKQIEALNEKN----SDLLDKYKRALADGENARQRFNKQLEESKLYGIQSFCKD 129 (225)
Q Consensus 71 ~~~~~i~~L~~el~~leee~----~elkdk~lR~~AEfEN~RkR~~KE~e~akk~aie~f~kd 129 (225)
.+..+++.+++++++++..+ +++.+--.|+..|.++.+++.....-...--.+.+|-+.
T Consensus 49 ~l~~~i~~le~e~~elkdk~lR~~AefeN~RKR~~kE~e~~~~~a~~~~~~~LLpV~DnLerA 111 (199)
T PRK14144 49 ALEEQLTLAEQKAHENWEKSVRALAELENVRRRMEREVANAHKYGVEKLISALLPVVDSLEQA 111 (199)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhHHHHH
Confidence 35556777777777766544 567777788889999998888776655554444444433
No 150
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=26.75 E-value=2.3e+02 Score=19.94 Aligned_cols=21 Identities=19% Similarity=0.317 Sum_probs=8.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q psy2067 77 EDLKKQIEALNEKNSDLLDKY 97 (225)
Q Consensus 77 ~~L~~el~~leee~~elkdk~ 97 (225)
..++.++.++.+.++++++..
T Consensus 17 ~tvk~en~~i~~~ve~i~env 37 (55)
T PF05377_consen 17 NTVKKENEEISESVEKIEENV 37 (55)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333
No 151
>cd07625 BAR_Vps17p The Bin/Amphiphysin/Rvs (BAR) domain of yeast Sorting Nexin Vps17p. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. Vsp17p forms a dimer with Vps5p, the yeast counterpart of human SNX1, and is part of the retromer complex that mediates the transport of the carboxypeptidase Y receptor Vps10p from endosomes to Golgi. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=26.68 E-value=4.6e+02 Score=23.32 Aligned_cols=58 Identities=19% Similarity=0.260 Sum_probs=39.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy2067 75 ELEDLKKQIEALNEKNSDLLDKYKRALADGENARQRFNKQLEESKLYGIQSFCKDLLD 132 (225)
Q Consensus 75 ~i~~L~~el~~leee~~elkdk~lR~~AEfEN~RkR~~KE~e~akk~aie~f~kdLLp 132 (225)
++++....+++.+.....+..++.|.-..+..=++|..++...-.+.++..++...+.
T Consensus 158 KvdeA~~~l~eA~~~e~~l~~k~~rIs~nm~~E~~rf~~~~~~dl~~~l~ey~~~~ie 215 (230)
T cd07625 158 KVDEAIRQLEEATKHEHDLSLKLKRITGNMLIERKEWTDWTEEDLQSAIREYTLRKIE 215 (230)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5566666677777777777777777777777767777766666666666666555443
No 152
>PTZ00446 vacuolar sorting protein SNF7-like; Provisional
Probab=26.47 E-value=4.3e+02 Score=22.94 Aligned_cols=98 Identities=15% Similarity=0.091 Sum_probs=56.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHhhhHHhhHHHHhhcCCc
Q psy2067 72 IKEELEDLKKQIEALNEKNSDLLDKYKRALADGENA-----RQRFNKQLEESKLYGIQSFCKDLLDIADTLSLANESVPK 146 (225)
Q Consensus 72 ~~~~i~~L~~el~~leee~~elkdk~lR~~AEfEN~-----RkR~~KE~e~akk~aie~f~kdLLpViDnLERAL~~~~~ 146 (225)
+...|..|+..+..|++....+..+..+..+..-.+ |+|...-. -++--.++-+..+..-++||+..+..+..
T Consensus 25 ~~~AIl~Lk~~~~~L~krq~~Le~kIe~e~~~Ak~~~~~~kk~~Al~~L--krKK~~E~ql~q~~~ql~nLEq~~~~iE~ 102 (191)
T PTZ00446 25 IYKAILKNREAIDALEKKQVQVEKKIKQLEIEAKQKVEQNQMSNAKILL--KRKKLYEQEIENILNNRLTLEDNMINLEN 102 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445666666666666666555555554333332211 11211111 13445566778888889999988766543
Q ss_pred ccccCCChhHHhHHHHHHHHHHHHHHHhccc
Q psy2067 147 EEVKDSNPHLKSLYEGLLMTDGNLKKHAHPV 177 (225)
Q Consensus 147 ~~~~~~~~~~~~l~~Gvemi~kqL~~vLek~ 177 (225)
. ..-..++.|++...+.|.++....
T Consensus 103 a------~~~~ev~~aLk~g~~aLK~~~k~~ 127 (191)
T PTZ00446 103 M------HLHKIAVNALSYAANTHKKLNNEI 127 (191)
T ss_pred H------HHHHHHHHHHHHHHHHHHHHHhcC
Confidence 2 123466778777777777777665
No 153
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=26.42 E-value=3.7e+02 Score=24.68 Aligned_cols=36 Identities=25% Similarity=0.400 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2067 74 EELEDLKKQIEALNEKNSDLLDKYKRALADGENARQ 109 (225)
Q Consensus 74 ~~i~~L~~el~~leee~~elkdk~lR~~AEfEN~Rk 109 (225)
.+++.|..++.++..++.+.+.+.-+..+++.-+.+
T Consensus 52 ~ei~~L~~qi~~~~~k~~~~~~~i~~~~~eik~l~~ 87 (265)
T COG3883 52 NEIESLDNQIEEIQSKIDELQKEIDQSKAEIKKLQK 87 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555555555555555555555555555544433
No 154
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=26.16 E-value=1.9e+02 Score=26.25 Aligned_cols=24 Identities=25% Similarity=0.459 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q psy2067 78 DLKKQIEALNEKNSDLLDKYKRAL 101 (225)
Q Consensus 78 ~L~~el~~leee~~elkdk~lR~~ 101 (225)
.|..++.+++.+.++.++++.|+.
T Consensus 153 eL~~eleele~e~ee~~erlk~le 176 (290)
T COG4026 153 ELLKELEELEAEYEEVQERLKRLE 176 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444443
No 155
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=26.16 E-value=4.7e+02 Score=23.26 Aligned_cols=71 Identities=14% Similarity=0.184 Sum_probs=47.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhhHHHHhhc-CCc
Q psy2067 75 ELEDLKKQIEALNEKNSDLLDKYKRALAD---GENARQRFNKQLEESKLYGIQSFCKDLLDIADTLSLANES-VPK 146 (225)
Q Consensus 75 ~i~~L~~el~~leee~~elkdk~lR~~AE---fEN~RkR~~KE~e~akk~aie~f~kdLLpViDnLERAL~~-~~~ 146 (225)
-+.++..+...|..+....-+.+.-..+| +++.-+.+..++.+....+ ..+-.++.|..|..++.+.. +.-
T Consensus 33 ~L~e~~kE~~~L~~Er~~h~eeLrqI~~DIn~lE~iIkqa~~er~~~~~~i-~r~~eey~~Lk~~in~~R~e~lgl 107 (230)
T PF10146_consen 33 CLEEYRKEMEELLQERMAHVEELRQINQDINTLENIIKQAESERNKRQEKI-QRLYEEYKPLKDEINELRKEYLGL 107 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHcCC
Confidence 34445555555555555555555444444 5778888899988866555 67778999999999998777 543
No 156
>PRK10869 recombination and repair protein; Provisional
Probab=26.10 E-value=2.4e+02 Score=28.04 Aligned_cols=26 Identities=15% Similarity=0.220 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHHHhhhHHhhHHH
Q psy2067 114 QLEESKLYGIQSFCKDLLDIADTLSL 139 (225)
Q Consensus 114 E~e~akk~aie~f~kdLLpViDnLER 139 (225)
++...++.+...|.+.+...+.+|..
T Consensus 363 ~LS~~R~~aA~~l~~~v~~~L~~L~m 388 (553)
T PRK10869 363 KLHQSRQRYAKELAQLITESMHELSM 388 (553)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 44444455555555555555555443
No 157
>KOG0971|consensus
Probab=25.89 E-value=6.8e+02 Score=27.40 Aligned_cols=51 Identities=20% Similarity=0.285 Sum_probs=36.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhhHHHHh
Q psy2067 90 NSDLLDKYKRALADGENARQRFNKQLEESKLYGIQSFCKDLLDIADTLSLAN 141 (225)
Q Consensus 90 ~~elkdk~lR~~AEfEN~RkR~~KE~e~akk~aie~f~kdLLpViDnLERAL 141 (225)
+.+++.++.-.+|+++---+|..+|..++. -+.+.....|-+..|++|.|.
T Consensus 267 lqEfkSkim~qqa~Lqrel~raR~e~keaq-e~ke~~k~emad~ad~iEmaT 317 (1243)
T KOG0971|consen 267 LQEFKSKIMEQQADLQRELKRARKEAKEAQ-EAKERYKEEMADTADAIEMAT 317 (1243)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHH
Confidence 455666666777776655555555555554 467788889999999999984
No 158
>PF03357 Snf7: Snf7; InterPro: IPR005024 This is a family of eukaryotic proteins which are variously described as either hypothetical protein, developmental protein or related to yeast SNF7. The family contains human CHMP1. CHMP1 (CHromatin Modifying Protein; CHarged Multivesicular body Protein), is encoded by an alternative open reading frame in the PRSM1 gene [] and is conserved in both complex and simple eukaryotes. CHMP1 contains a predicted bipartite nuclear localisation signal and distributes as distinct forms to the cytoplasm and the nuclear matrix in all cell lines tested. Human CHMP1 is strongly implicated in multivesicular body formation. A multivesicular body is a vesicle-filled endosome that targets proteins to the interior of lysosomes. Immunocytochemistry and biochemical fractionation localise CHMP1 to early endosomes and CHMP1 physically interacts with SKD1/VPS4, a highly conserved protein directly linked to multivesicular body sorting in yeast. Similar to the action of a mutant SKD1 protein, over expression of a fusion derivative of human CHMP1 dilates endosomal compartments and disrupts the normal distribution of several endosomal markers. Genetic studies in Saccharomyces cerevisiae (Baker's yeast) further support a conserved role of CHMP1 in vesicle trafficking. Deletion of CHM1, the budding yeast homologue of CHMP1, results in defective sorting of carboxypeptidases S and Y and produces abnormal, multi-lamellar prevacuolar compartments. This phenotype classifies CHM1 as a member of the class E vacuolar protein sorting genes []. ; GO: 0015031 protein transport; PDB: 2V6X_B 2W2U_D 2GD5_D 3FRT_B 3FRV_A 4ABM_D 3EAB_H 3HTU_D.
Probab=25.76 E-value=1.8e+02 Score=23.22 Aligned_cols=29 Identities=34% Similarity=0.463 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2067 74 EELEDLKKQIEALNEKNSDLLDKYKRALA 102 (225)
Q Consensus 74 ~~i~~L~~el~~leee~~elkdk~lR~~A 102 (225)
.....|+..+..++.+++.+..+...+..
T Consensus 8 ~~~~~L~~~~~~le~~i~~~~~~~k~~~~ 36 (171)
T PF03357_consen 8 KTIRRLEKQIKRLEKKIKKLEKKAKKAIK 36 (171)
T ss_dssp HHHHHHHHHHHHHHHHHHHCHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455566666666666665555554443
No 159
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=25.58 E-value=2.7e+02 Score=20.33 Aligned_cols=38 Identities=21% Similarity=0.318 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHH
Q psy2067 75 ELEDLKKQIEALNEK-------NSDLLDKYKRALADGENARQRFN 112 (225)
Q Consensus 75 ~i~~L~~el~~leee-------~~elkdk~lR~~AEfEN~RkR~~ 112 (225)
.+..|+.++++|+++ ...++....++..|-.+...|+.
T Consensus 19 ti~~Lq~e~eeLke~n~~L~~e~~~L~~en~~L~~e~~~~~~rl~ 63 (72)
T PF06005_consen 19 TIALLQMENEELKEKNNELKEENEELKEENEQLKQERNAWQERLR 63 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555555555555 55555555555555555555543
No 160
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=25.57 E-value=6.3e+02 Score=25.11 Aligned_cols=70 Identities=17% Similarity=0.246 Sum_probs=41.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHhhhHHhhHHHHh
Q psy2067 72 IKEELEDLKKQIEALNEKNSDLLDKYKRALADGENARQRFNKQLEESKLY------GIQSFCKDLLDIADTLSLAN 141 (225)
Q Consensus 72 ~~~~i~~L~~el~~leee~~elkdk~lR~~AEfEN~RkR~~KE~e~akk~------aie~f~kdLLpViDnLERAL 141 (225)
+-.++.+++.++..+..+.+.++.+..|+++.-.|+..|.+...+..+.. .+++-...+...+++|.+=|
T Consensus 64 lva~~k~~r~~~~~l~~~N~~l~~eN~~L~~r~~~id~~i~~av~~~~~~~~~~~~ql~~~~~~~~~~l~~l~~~l 139 (472)
T TIGR03752 64 LVAEVKELRKRLAKLISENEALKAENERLQKREQSIDQQIQQAVQSETQELTKEIEQLKSERQQLQGLIDQLQRRL 139 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55677788888888888888888777777775555544444443332211 11222334555566666544
No 161
>TIGR02209 ftsL_broad cell division protein FtsL. This model represents FtsL, both forms similar to that in E. coli and similar to that in B. subtilis. FtsL is one of the later proteins active in cell division septum formation. FtsL is small, low in complexity, and highly divergent. The scope of this model is broader than that of the Pfam model pfam04999.3 for FtsL, as this one includes FtsL from Bacillus subtilis and related species.
Probab=25.45 E-value=2.3e+02 Score=20.23 Aligned_cols=32 Identities=9% Similarity=0.205 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2067 77 EDLKKQIEALNEKNSDLLDKYKRALADGENAR 108 (225)
Q Consensus 77 ~~L~~el~~leee~~elkdk~lR~~AEfEN~R 108 (225)
..+..++..++.++++++.++.+++.|...+.
T Consensus 27 ~~~~~~~~~~~~~~~~l~~en~~L~~ei~~l~ 58 (85)
T TIGR02209 27 RQLNNELQKLQLEIDKLQKEWRDLQLEVAELS 58 (85)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 34455556666666666666655655555443
No 162
>PRK14158 heat shock protein GrpE; Provisional
Probab=25.35 E-value=4.5e+02 Score=22.81 Aligned_cols=58 Identities=21% Similarity=0.157 Sum_probs=37.6
Q ss_pred cchhHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2067 70 PKIKEELEDLKKQIEALNEKN----SDLLDKYKRALADGENARQRFNKQLEESKLYGIQSFC 127 (225)
Q Consensus 70 ~~~~~~i~~L~~el~~leee~----~elkdk~lR~~AEfEN~RkR~~KE~e~akk~aie~f~ 127 (225)
..++.+++.+++++.+++.++ +++.+--.|...|.++.++......-...--.+.+|-
T Consensus 43 ~~le~~l~~le~e~~el~d~~lR~~AefeN~RkR~~kE~e~~~~~a~~~~~~~lLpV~DnLe 104 (194)
T PRK14158 43 KELEEALAAKEAEAAANWDKYLRERADLENYRKRVQKEKEELLKYGNESLILEILPAVDNME 104 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHH
Confidence 456666777777777666544 5666777788888888888776665544444444443
No 163
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=25.34 E-value=6.2e+02 Score=26.42 Aligned_cols=22 Identities=9% Similarity=0.306 Sum_probs=8.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q psy2067 93 LLDKYKRALADGENARQRFNKQ 114 (225)
Q Consensus 93 lkdk~lR~~AEfEN~RkR~~KE 114 (225)
....+.+..++.+..+++++++
T Consensus 530 ~~~~~~~~~~e~~~~~~~l~~~ 551 (771)
T TIGR01069 530 KNEHLEKLLKEQEKLKKELEQE 551 (771)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333444444444443333
No 164
>PRK14141 heat shock protein GrpE; Provisional
Probab=25.10 E-value=4.8e+02 Score=22.98 Aligned_cols=56 Identities=20% Similarity=0.160 Sum_probs=37.3
Q ss_pred cchhHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2067 70 PKIKEELEDLKKQIEALNEKN----SDLLDKYKRALADGENARQRFNKQLEESKLYGIQS 125 (225)
Q Consensus 70 ~~~~~~i~~L~~el~~leee~----~elkdk~lR~~AEfEN~RkR~~KE~e~akk~aie~ 125 (225)
..+..+++.|++++.+++..+ +++.+--.|+..|.+++++......-...--.+.+
T Consensus 34 ~~~~~~i~~le~e~~elkd~~lR~~Ae~eN~RKR~~kE~e~~~~~a~~~~~~dLLpViDn 93 (209)
T PRK14141 34 DPEPDPLEALKAENAELKDRMLRLAAEMENLRKRTQRDVADARAYGIAGFARDMLSVSDN 93 (209)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhH
Confidence 445567777777777765554 56677778888999998888776654443333333
No 165
>COG1382 GimC Prefoldin, chaperonin cofactor [Posttranslational modification, protein turnover, chaperones]
Probab=24.90 E-value=1.1e+02 Score=24.84 Aligned_cols=38 Identities=13% Similarity=0.206 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2067 75 ELEDLKKQIEALNEKNSDLLDKYKRALADGENARQRFN 112 (225)
Q Consensus 75 ~i~~L~~el~~leee~~elkdk~lR~~AEfEN~RkR~~ 112 (225)
-.+.|+..++.++.+++.+..+-.++.-.|+.++..+.
T Consensus 71 ~~~eL~er~E~Le~ri~tLekQe~~l~e~l~eLq~~i~ 108 (119)
T COG1382 71 AVDELEERKETLELRIKTLEKQEEKLQERLEELQSEIQ 108 (119)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444444444444433
No 166
>KOG3003|consensus
Probab=24.86 E-value=5.1e+02 Score=23.44 Aligned_cols=58 Identities=10% Similarity=0.004 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHH
Q psy2067 77 EDLKKQIEALNEKNSDLLDKYKRALADGENARQRFNKQLEESKLYGIQSFCKDLLDIA 134 (225)
Q Consensus 77 ~~L~~el~~leee~~elkdk~lR~~AEfEN~RkR~~KE~e~akk~aie~f~kdLLpVi 134 (225)
.+|..++..--++.+.+.++..|..+++.+|..+.-..----.-..++....-+.+..
T Consensus 87 ~eLkdk~~rs~Ad~eNlr~R~~r~~edak~FaiQ~f~kdLleVaD~Le~a~~~v~ee~ 144 (236)
T KOG3003|consen 87 QELKDKYLRSLAECENLRDRTIRDVEDAKKFAIQSFCKDLLEVADNLEKATECVKEES 144 (236)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhh
Confidence 3333444333455678899999999999999988755422222333344444444443
No 167
>PRK13922 rod shape-determining protein MreC; Provisional
Probab=24.77 E-value=1.9e+02 Score=25.52 Aligned_cols=16 Identities=25% Similarity=0.343 Sum_probs=6.8
Q ss_pred HHHHHHHHHHHHHHHH
Q psy2067 79 LKKQIEALNEKNSDLL 94 (225)
Q Consensus 79 L~~el~~leee~~elk 94 (225)
+.++.++|++++.+++
T Consensus 74 l~~en~~L~~e~~~l~ 89 (276)
T PRK13922 74 LREENEELKKELLELE 89 (276)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3444444444444433
No 168
>PF04728 LPP: Lipoprotein leucine-zipper; InterPro: IPR006817 This repeating sequence, NAKVDQLSNDV, is found in the enterobacterial outer membrane lipoprotein LPP. The outer membrane lipoprotein is the most abundant protein in an Escherichia coli cell. The messenger RNA for the lipoprotein of the E. coli outer membrane codes for a putative precursor, prolipoprotein, which has 20 additional amino acid residues extending from the amino terminus of the lipoprotein.; GO: 0019867 outer membrane; PDB: 1JCC_A 2GUV_C 2GUS_A 1JCD_A 1KFM_A 1T8Z_D 1KFN_A 1EQ7_A.
Probab=24.71 E-value=2.6e+02 Score=19.77 Aligned_cols=34 Identities=24% Similarity=0.368 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2067 75 ELEDLKKQIEALNEKNSDLLDKYKRALADGENAR 108 (225)
Q Consensus 75 ~i~~L~~el~~leee~~elkdk~lR~~AEfEN~R 108 (225)
+++.|...+..|..++..|.....-+.+|....+
T Consensus 4 kid~Ls~dVq~L~~kvdqLs~dv~~lr~~v~~ak 37 (56)
T PF04728_consen 4 KIDQLSSDVQTLNSKVDQLSSDVNALRADVQAAK 37 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444555555555555554444444444444333
No 169
>PRK09039 hypothetical protein; Validated
Probab=24.62 E-value=5e+02 Score=24.21 Aligned_cols=39 Identities=8% Similarity=0.145 Sum_probs=26.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2067 73 KEELEDLKKQIEALNEKNSDLLDKYKRALADGENARQRF 111 (225)
Q Consensus 73 ~~~i~~L~~el~~leee~~elkdk~lR~~AEfEN~RkR~ 111 (225)
......+..++...+....+..-++.++.++++.+|+..
T Consensus 115 ~~~~~~l~~~L~~~k~~~se~~~~V~~L~~qI~aLr~Ql 153 (343)
T PRK09039 115 EGRAGELAQELDSEKQVSARALAQVELLNQQIAALRRQL 153 (343)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 345556666677777777777777777777777777663
No 170
>KOG0796|consensus
Probab=24.53 E-value=6e+02 Score=23.97 Aligned_cols=94 Identities=19% Similarity=0.280 Sum_probs=61.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHhhhHHh
Q psy2067 73 KEELEDLKKQIEALNEKNSDLL-----DKYKRALADGENARQRFNKQLEESKL------------YGIQSFCKDLLDIAD 135 (225)
Q Consensus 73 ~~~i~~L~~el~~leee~~elk-----dk~lR~~AEfEN~RkR~~KE~e~akk------------~aie~f~kdLLpViD 135 (225)
..++..|...|..+-+++++|- +.-.-+..+.+-+|.+-..+....++ ..+=.++..+|-|.|
T Consensus 121 ~~~v~~l~e~I~~~l~~~E~LG~eG~Veeaq~~~~e~E~lk~~e~e~~~~~~~~~~~~~~~~~qkl~VCeVCGa~L~~~D 200 (319)
T KOG0796|consen 121 AEKVHELEEKIGKLLEKAEELGEEGNVEEAQKAMKEVEELKAKEKEEAEESYNTTMPGASAQQQKLRVCEVCGAFLSVND 200 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHccCcchhhhhhhhhhHHHhhhHHHhccc
Confidence 3456666666666666666553 33455666777777622333333222 334456889999999
Q ss_pred hHHHHhhcCCcccccCCChhHHhHHHHHHHHHHHHHHHhccc
Q psy2067 136 TLSLANESVPKEEVKDSNPHLKSLYEGLLMTDGNLKKHAHPV 177 (225)
Q Consensus 136 nLERAL~~~~~~~~~~~~~~~~~l~~Gvemi~kqL~~vLek~ 177 (225)
+=.|.-.|+.- .++-|+-+|...+....+..
T Consensus 201 ~d~RlaDHf~G-----------KlHlGy~~iR~~l~eLk~~~ 231 (319)
T KOG0796|consen 201 ADRRLADHFGG-----------KLHLGYVLIREKLAELKKEK 231 (319)
T ss_pred hHHHHHHhhcc-----------hHHHHHHHHHHHHHHHHHHH
Confidence 99999888752 47889988888877776665
No 171
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=24.50 E-value=1.8e+02 Score=26.80 Aligned_cols=33 Identities=21% Similarity=0.247 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2067 79 LKKQIEALNEKNSDLLDKYKRALADGENARQRF 111 (225)
Q Consensus 79 L~~el~~leee~~elkdk~lR~~AEfEN~RkR~ 111 (225)
++.+++.+++++.++...+.....++..+|++.
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 36 (364)
T TIGR01242 4 LDVRIRKLEDEKRSLEKEKIRLERELERLRSEI 36 (364)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555566666665555555556666665555
No 172
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=24.43 E-value=2.5e+02 Score=25.86 Aligned_cols=43 Identities=28% Similarity=0.382 Sum_probs=0.0
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2067 71 KIKEELEDLKKQIEALNEKNSDLLDKYKRALADGENARQRFNK 113 (225)
Q Consensus 71 ~~~~~i~~L~~el~~leee~~elkdk~lR~~AEfEN~RkR~~K 113 (225)
+...++..++.++..++.+++++..+...+.+++.+..+...+
T Consensus 227 ~~k~~l~el~~el~~l~~~i~~~~~~k~~l~~eI~e~~~~~~~ 269 (325)
T PF08317_consen 227 AKKKELAELQEELEELEEKIEELEEQKQELLAEIAEAEKIREE 269 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 173
>KOG4603|consensus
Probab=23.82 E-value=4.9e+02 Score=22.71 Aligned_cols=74 Identities=18% Similarity=0.180 Sum_probs=56.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhhHHHHhhcCCcc
Q psy2067 74 EELEDLKKQIEALNEKNSDLLDKYKRALADGENARQRFNKQLEESKLYGIQSFCKDLLDIADTLSLANESVPKE 147 (225)
Q Consensus 74 ~~i~~L~~el~~leee~~elkdk~lR~~AEfEN~RkR~~KE~e~akk~aie~f~kdLLpViDnLERAL~~~~~~ 147 (225)
+++..|..++..+.+++..+++.....-||+.-+-.-+.-+--+-..-.+.+.+...=.=+-||.-+..++.++
T Consensus 79 eel~~ld~~i~~l~ek~q~l~~t~s~veaEik~L~s~Lt~eemQe~i~~L~kev~~~~erl~~~k~g~~~vtpe 152 (201)
T KOG4603|consen 79 EELQVLDGKIVALTEKVQSLQQTCSYVEAEIKELSSALTTEEMQEEIQELKKEVAGYRERLKNIKAGTNHVTPE 152 (201)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHH
Confidence 57788888888888888888888888888888877766444444444555667777777888999999998764
No 174
>COG3937 Uncharacterized conserved protein [Function unknown]
Probab=23.77 E-value=81 Score=25.19 Aligned_cols=31 Identities=29% Similarity=0.554 Sum_probs=20.7
Q ss_pred CcchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2067 69 DPKIKEELEDLKKQIEALNEKNSDLLDKYKR 99 (225)
Q Consensus 69 ~~~~~~~i~~L~~el~~leee~~elkdk~lR 99 (225)
+-....+...+..++..|++++.+|++++.|
T Consensus 78 ~~~r~~~~~~l~~rvd~Lerqv~~Lenk~kr 108 (108)
T COG3937 78 EVARQSEMDELTERVDALERQVADLENKLKR 108 (108)
T ss_pred cccccchHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 3444455677777777788777777776543
No 175
>PF01025 GrpE: GrpE; InterPro: IPR000740 Molecular chaperones are a diverse family of proteins that function to protect proteins in the intracellular milieu from irreversible aggregation during synthesis and in times of cellular stress. The bacterial molecular chaperone DnaK is an enzyme that couples cycles of ATP binding, hydrolysis, and ADP release by an N-terminal ATP-hydrolysing domain to cycles of sequestration and release of unfolded proteins by a C-terminal substrate binding domain. In prokaryotes the grpE protein. Dimeric GrpE is the co-chaperone for DnaK, and acts as a nucleotide exchange factor, stimulating the rate of ADP release 5000-fold []. DnaK is itself a weak ATPase; ATP hydrolysis by DnaK is stimulated by its interaction with another co-chaperone, DnaJ. Thus the co-chaperones DnaJ and GrpE are capable of tightly regulating the nucleotide-bound and substrate-bound state of DnaK in ways that are necessary for the normal housekeeping functions and stress-related functions of the DnaK molecular chaperone cycle. The X-ray crystal structure of GrpE in complex with the ATPase domain of DnaK revealed that GrpE is an asymmetric homodimer, bent in a manner that favours extensive contacts with only one DnaKATPase monomer []. GrpE does not actively compete for the atomic positions occupied by the nucleotide. GrpE and ADP mutually reduce one another's affinity for DnaK 200-fold, and ATP instantly dissociates GrpE from DnaK.; GO: 0000774 adenyl-nucleotide exchange factor activity, 0042803 protein homodimerization activity, 0051087 chaperone binding, 0006457 protein folding; PDB: 3A6M_A 4ANI_A 1DKG_B.
Probab=23.75 E-value=3.9e+02 Score=21.52 Aligned_cols=24 Identities=17% Similarity=0.184 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q psy2067 91 SDLLDKYKRALADGENARQRFNKQ 114 (225)
Q Consensus 91 ~elkdk~lR~~AEfEN~RkR~~KE 114 (225)
+++.+-..|+..+.++.++...+.
T Consensus 39 ae~en~~~r~~~e~~~~~~~~~~~ 62 (165)
T PF01025_consen 39 AEFENYRKRLEKEKEEAKKYALEK 62 (165)
T ss_dssp HHHHHHHHHHHHHHHHHHHCCHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444555566666665544333
No 176
>PF02183 HALZ: Homeobox associated leucine zipper; InterPro: IPR003106 This region is a plant specific leucine zipper that is always found associated with a homeobox []. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=23.74 E-value=2.3e+02 Score=18.86 Aligned_cols=32 Identities=16% Similarity=0.292 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2067 75 ELEDLKKQIEALNEKNSDLLDKYKRALADGEN 106 (225)
Q Consensus 75 ~i~~L~~el~~leee~~elkdk~lR~~AEfEN 106 (225)
+.+.|+.....|..+.+.+......+.|+..-
T Consensus 6 Dy~~LK~~yd~Lk~~~~~L~~E~~~L~aev~~ 37 (45)
T PF02183_consen 6 DYDALKASYDSLKAEYDSLKKENEKLRAEVQE 37 (45)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444333333333343333
No 177
>KOG2867|consensus
Probab=23.55 E-value=4e+02 Score=25.57 Aligned_cols=73 Identities=22% Similarity=0.230 Sum_probs=54.7
Q ss_pred HHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHhhhHHhhHHHHhhcCCcccccC--CChhHHhHHHHHHHHHHHHH
Q psy2067 99 RALADGENARQRFNKQLEES---KLYGIQSFCKDLLDIADTLSLANESVPKEEVKD--SNPHLKSLYEGLLMTDGNLK 171 (225)
Q Consensus 99 R~~AEfEN~RkR~~KE~e~a---kk~aie~f~kdLLpViDnLERAL~~~~~~~~~~--~~~~~~~l~~Gvemi~kqL~ 171 (225)
++.+++-+|--++...+... ..+.+...++.|+.|+|.|++-+...|...... .|.....+++++.-...+++
T Consensus 34 ~Ay~~i~~fi~~ls~~I~g~~~~~~~p~s~~v~~l~~ild~l~~~i~e~P~~~~~~Rfgn~AyR~w~~kl~~~~~~ll 111 (367)
T KOG2867|consen 34 RAYARIIGFINDLSESIKGHRNTYSFPISEQVKRLMDILDQLDHIIDETPPIDGPQRFGNKAYRTWYEKLYEELPKLL 111 (367)
T ss_pred HHHHHHHHHHHHHHHHhcCCCccccchhHHHHHHHHHHHHHHHHHHHcCCCCCChhhhcCHHHHHHHHHHHHHHHHHH
Confidence 68899999999999888872 333568999999999999999988776543221 46777888888655544444
No 178
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=23.46 E-value=3.8e+02 Score=21.50 Aligned_cols=34 Identities=24% Similarity=0.344 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2067 75 ELEDLKKQIEALNEKNSDLLDKYKRALADGENAR 108 (225)
Q Consensus 75 ~i~~L~~el~~leee~~elkdk~lR~~AEfEN~R 108 (225)
.++.|.+.|..++.++..+++++.|+.+.-+..+
T Consensus 17 ~ve~L~s~lr~~E~E~~~l~~el~~l~~~r~~l~ 50 (120)
T PF12325_consen 17 LVERLQSQLRRLEGELASLQEELARLEAERDELR 50 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555666666666666666666655555444433
No 179
>PF13600 DUF4140: N-terminal domain of unknown function (DUF4140)
Probab=23.33 E-value=2.3e+02 Score=21.15 Aligned_cols=31 Identities=29% Similarity=0.457 Sum_probs=20.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2067 73 KEELEDLKKQIEALNEKNSDLLDKYKRALAD 103 (225)
Q Consensus 73 ~~~i~~L~~el~~leee~~elkdk~lR~~AE 103 (225)
..++..|++++..++.++..+.++...+.+.
T Consensus 69 ~~~~~~l~~~l~~l~~~~~~~~~~~~~~~~~ 99 (104)
T PF13600_consen 69 SPELKELEEELEALEDELAALQDEIQALEAQ 99 (104)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3567777777777777777666666555443
No 180
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=23.30 E-value=5.1e+02 Score=22.67 Aligned_cols=18 Identities=17% Similarity=0.274 Sum_probs=7.6
Q ss_pred HHHHHHHHHHHHHHHHHH
Q psy2067 75 ELEDLKKQIEALNEKNSD 92 (225)
Q Consensus 75 ~i~~L~~el~~leee~~e 92 (225)
+-..|..++..+..+++.
T Consensus 50 e~~~L~~e~~~l~~e~e~ 67 (251)
T PF11932_consen 50 EKQELLAEYRQLEREIEN 67 (251)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333344444444444433
No 181
>PF01166 TSC22: TSC-22/dip/bun family; InterPro: IPR000580 Several eukaryotic proteins are evolutionary related and are thought to be involved in transcriptional regulation. These proteins are highly similar in a region of about 50 residues that include a conserved leucine-zipper domain most probably involved in homo- or hetero-dimerisation. Proteins containing this signature include: Vertebrate protein TSC-22 [], a transcriptional regulator which seems to act on C-type natriuretic peptide (CNP) promoter. Mammalian protein DIP (DSIP-immunoreactive peptide) [], a protein whose function is not yet known. Drosophila protein bunched [] (gene bun) (also known as shortsighted), a probable transcription factor required for peripheral nervous system morphogenesis, eye development and oogenesis. Caenorhabditis elegans hypothetical protein T18D3.7. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1DIP_B.
Probab=23.11 E-value=2e+02 Score=20.64 Aligned_cols=21 Identities=57% Similarity=0.700 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q psy2067 74 EELEDLKKQIEALNEKNSDLL 94 (225)
Q Consensus 74 ~~i~~L~~el~~leee~~elk 94 (225)
++++.|+..|.+|+.+...+.
T Consensus 14 EEVevLK~~I~eL~~~n~~Le 34 (59)
T PF01166_consen 14 EEVEVLKEQIAELEERNSQLE 34 (59)
T ss_dssp TSHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 456666666666666655443
No 182
>PF11348 DUF3150: Protein of unknown function (DUF3150); InterPro: IPR021496 This bacterial family of proteins with unknown function appears to be restricted to Proteobacteria.
Probab=23.10 E-value=4e+02 Score=23.93 Aligned_cols=60 Identities=13% Similarity=0.135 Sum_probs=42.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhhHHHHhh
Q psy2067 81 KQIEALNEKNSDLLDKYKRALADG-ENARQRFNKQLEESKLYGIQSFCKDLLDIADTLSLANE 142 (225)
Q Consensus 81 ~el~~leee~~elkdk~lR~~AEf-EN~RkR~~KE~e~akk~aie~f~kdLLpViDnLERAL~ 142 (225)
.+++.+.++++.++..+.+..++| .+|-+-.+.-+.+. =..+.++++-.|..+++++.+.
T Consensus 81 ~~~~~l~~~L~~i~~eF~~~k~~Fl~~Yd~~i~~w~~~~--pew~~~Ir~~~~~~~~v~~r~~ 141 (257)
T PF11348_consen 81 DKAEELAEELEDIKTEFEQEKQDFLANYDQAIEEWIDRH--PEWADIIRRAAPPAEDVRSRFS 141 (257)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--hHHHHHHHhcCCCHHHHHhhcc
Confidence 455566677777777777777777 45555555555553 4466688888999999998754
No 183
>COG1322 Predicted nuclease of restriction endonuclease-like fold, RmuC family [General function prediction only]
Probab=22.97 E-value=7.3e+02 Score=24.38 Aligned_cols=65 Identities=15% Similarity=0.076 Sum_probs=49.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhhH
Q psy2067 73 KEELEDLKKQIEALNEKNSDLLDKYKRALADGENARQRFNKQLEESKLYGIQSFCKDLLDIADTL 137 (225)
Q Consensus 73 ~~~i~~L~~el~~leee~~elkdk~lR~~AEfEN~RkR~~KE~e~akk~aie~f~kdLLpViDnL 137 (225)
......+...+....+++..+.+...++..+|++...++..+......--.+..++.|+.+.-..
T Consensus 76 ~~l~~~l~~~~~~~~eq~~~l~~~~~ql~~~~~~~~~~i~e~~~~~~~el~~~~~~~Ll~~~~~~ 140 (448)
T COG1322 76 NELKARLQQQLLQSREQLQLLIESLAQLSSEFQELANEIFEELNRRLAELNQQNLKQLLKPLREV 140 (448)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 33445566666677777788888889999999999999988888887777777777777654433
No 184
>COG5440 Uncharacterized conserved protein [Function unknown]
Probab=22.61 E-value=1.2e+02 Score=25.86 Aligned_cols=48 Identities=13% Similarity=0.010 Sum_probs=28.8
Q ss_pred HHHHHHHHHHhcccCCCceEeccCCCCCCCCCCccchhhcccCCeeeeeecccc
Q psy2067 164 LMTDGNLKKHAHPVEYPSVVIIPDSIAVMERISLEQSLSIFLANFSVEWLQSPL 217 (225)
Q Consensus 164 emi~kqL~~vLek~Gvgv~~I~p~~~~~g~~FDP~~heAi~~~n~VveV~QkGY 217 (225)
.+..++..++|...|. ....+ ..++-+.|...+.-+.|.++.|+|+.=
T Consensus 4 ~~~d~~I~~WL~EeG~--~~~kv----~~~na~fH~~v~~P~~~~~i~VI~p~~ 51 (161)
T COG5440 4 LDSDNMILDWLAEEGN--VSVKV----PDENAPFHFVVKPPTGGKVISVIQPPR 51 (161)
T ss_pred hhHHHHHHHHHHHhCc--eeecc----CCCCCceeEEecCCCCCceEEEEecCC
Confidence 3567888999999954 55544 223333333333222349999999753
No 185
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=22.49 E-value=2e+02 Score=28.56 Aligned_cols=15 Identities=0% Similarity=0.160 Sum_probs=7.3
Q ss_pred HHHHHHHHHHHHHHH
Q psy2067 80 KKQIEALNEKNSDLL 94 (225)
Q Consensus 80 ~~el~~leee~~elk 94 (225)
+.+..+++++++.++
T Consensus 75 Q~kasELEKqLaaLr 89 (475)
T PRK13729 75 QVTAAQMQKQYEEIR 89 (475)
T ss_pred HHHHHHHHHHHHHHH
Confidence 344445555555543
No 186
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=22.36 E-value=4.9e+02 Score=22.18 Aligned_cols=34 Identities=15% Similarity=0.138 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHHhcccCCCceEeccCCCCCCCCCC
Q psy2067 159 LYEGLLMTDGNLKKHAHPVEYPSVVIIPDSIAVMERIS 196 (225)
Q Consensus 159 l~~Gvemi~kqL~~vLek~Gvgv~~I~p~~~~~g~~FD 196 (225)
+.+-|.++..=+.+ ++|+.-..+.. .-|++.+||
T Consensus 154 wTDNI~~l~~~~~~---k~~~~~~~i~k-~f~Ip~d~d 187 (188)
T PF03962_consen 154 WTDNIFSLKSYLKK---KFGMDEEDIRK-EFGIPEDFD 187 (188)
T ss_pred HHhhHHHHHHHHHH---hcCCCHHHHHH-HcCCccccC
Confidence 33444444333333 24443333332 234455555
No 187
>cd07667 BAR_SNX30 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 30. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. The specific function of SNX30 is still unknown. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=22.33 E-value=5.8e+02 Score=22.96 Aligned_cols=7 Identities=43% Similarity=0.581 Sum_probs=2.8
Q ss_pred HHHHHHH
Q psy2067 159 LYEGLLM 165 (225)
Q Consensus 159 l~~Gvem 165 (225)
+++++-.
T Consensus 226 fy~~~~~ 232 (240)
T cd07667 226 YYEKCLT 232 (240)
T ss_pred HHHHHHH
Confidence 4444433
No 188
>cd00584 Prefoldin_alpha Prefoldin alpha subunit; Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.
Probab=22.24 E-value=3.4e+02 Score=21.07 Aligned_cols=43 Identities=19% Similarity=0.265 Sum_probs=29.8
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2067 70 PKIKEELEDLKKQIEALNEKNSDLLDKYKRALADGENARQRFN 112 (225)
Q Consensus 70 ~~~~~~i~~L~~el~~leee~~elkdk~lR~~AEfEN~RkR~~ 112 (225)
-.+.+.+.-++.++..+++.++++.+.+.++.+++.-+...+.
T Consensus 83 ~~~~eA~~~l~~r~~~l~~~~~~l~~~l~~l~~~~~~~~~~l~ 125 (129)
T cd00584 83 KDLEEAIEFLDKKIEELTKQIEKLQKELAKLKDQINTLEAELQ 125 (129)
T ss_pred ecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666777777777777777777777777777766655544
No 189
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=22.22 E-value=3.2e+02 Score=23.84 Aligned_cols=40 Identities=23% Similarity=0.382 Sum_probs=25.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2067 73 KEELEDLKKQIEALNEKNSDLLDKYKRALADGENARQRFN 112 (225)
Q Consensus 73 ~~~i~~L~~el~~leee~~elkdk~lR~~AEfEN~RkR~~ 112 (225)
..+++.....+..++.++.....+...+-+++..+.+|+.
T Consensus 7 ~~eld~~~~~~~~~~~~l~~~~~~~~~aE~e~~~l~rri~ 46 (237)
T PF00261_consen 7 KDELDEAEERLEEAEEKLKEAEKRAEKAEAEVASLQRRIQ 46 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555666666666666666666666677777776654
No 190
>PLN03217 transcription factor ATBS1; Provisional
Probab=22.15 E-value=1.9e+02 Score=22.40 Aligned_cols=52 Identities=13% Similarity=0.213 Sum_probs=36.6
Q ss_pred CcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2067 69 DPKIKEELEDLKKQIEALNEKNSDLLDKYKRALADGENARQRFNKQLEESKL 120 (225)
Q Consensus 69 ~~~~~~~i~~L~~el~~leee~~elkdk~lR~~AEfEN~RkR~~KE~e~akk 120 (225)
|+++.+-+-.|++-+.+...-...-+--..+.+.|-=||-|++.+|.++.-.
T Consensus 19 ddqi~dLvsKLq~llPe~r~~r~s~k~saskvLqEtC~YIrsLhrEvDdLSe 70 (93)
T PLN03217 19 EDQINDLIIKLQQLLPELRDSRRSDKVSAARVLQDTCNYIRNLHREVDDLSE 70 (93)
T ss_pred HHHHHHHHHHHHHHChHHHhhhccccccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6667767777777777665412222444567889999999999999988764
No 191
>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms]
Probab=21.84 E-value=5.6e+02 Score=22.65 Aligned_cols=78 Identities=8% Similarity=0.204 Sum_probs=49.9
Q ss_pred CCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhhHHHHhhc
Q psy2067 67 NVDPKIKEELEDLKKQIEALNEKNSDLLDKYKRALADG---ENARQRFNKQLEESKLYGIQSFCKDLLDIADTLSLANES 143 (225)
Q Consensus 67 ~~~~~~~~~i~~L~~el~~leee~~elkdk~lR~~AEf---EN~RkR~~KE~e~akk~aie~f~kdLLpViDnLERAL~~ 143 (225)
|+..-+.-.|...+..+.+++..+....-.-.++..++ .....+.+.....+..-|.+.|+...|.-.-+++--+..
T Consensus 24 Dp~~~l~Q~ird~~~~l~~ar~~~A~~~a~~k~~e~~~~~~~~~~~k~e~~A~~Al~~g~E~LAr~al~~~~~le~~~~~ 103 (225)
T COG1842 24 DPEKMLEQAIRDMESELAKARQALAQAIARQKQLERKLEEAQARAEKLEEKAELALQAGNEDLAREALEEKQSLEDLAKA 103 (225)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH
Confidence 44445556666677777777766665544444443333 334444555666777788899999999988888776544
Q ss_pred C
Q psy2067 144 V 144 (225)
Q Consensus 144 ~ 144 (225)
.
T Consensus 104 ~ 104 (225)
T COG1842 104 L 104 (225)
T ss_pred H
Confidence 3
No 192
>TIGR00293 prefoldin, archaeal alpha subunit/eukaryotic subunit 5. This model finds a set of small proteins from the Archaea and from Aquifex aeolicus that may represent two orthologous groups. The proteins are predicted to be mostly coiled coil, and may hit large numbers of proteins that contain coiled coil regions.
Probab=21.54 E-value=3.1e+02 Score=21.18 Aligned_cols=43 Identities=23% Similarity=0.278 Sum_probs=31.6
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2067 70 PKIKEELEDLKKQIEALNEKNSDLLDKYKRALADGENARQRFN 112 (225)
Q Consensus 70 ~~~~~~i~~L~~el~~leee~~elkdk~lR~~AEfEN~RkR~~ 112 (225)
...++..+-++..+..+.+.++.+...+..+...+..+..+++
T Consensus 82 ~~~~eA~~~l~~~~~~l~~~~~~l~~~l~~l~~~~~~i~~~l~ 124 (126)
T TIGR00293 82 KDAEEAIEFLKKRIEELEKAIEKLQEALAELASRAQQLEQEAQ 124 (126)
T ss_pred ecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4566777778888888888888887777777777777666553
No 193
>PRK05771 V-type ATP synthase subunit I; Validated
Probab=21.38 E-value=4.5e+02 Score=26.41 Aligned_cols=36 Identities=17% Similarity=0.315 Sum_probs=21.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2067 72 IKEELEDLKKQIEALNEKNSDLLDKYKRALADGENA 107 (225)
Q Consensus 72 ~~~~i~~L~~el~~leee~~elkdk~lR~~AEfEN~ 107 (225)
+.+.+.++++++++++++++++++++.+...+...+
T Consensus 213 p~~~l~~l~~~l~~l~~~~~~~~~~l~~~~~~~~~~ 248 (646)
T PRK05771 213 PSELIREIKEELEEIEKERESLLEELKELAKKYLEE 248 (646)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666666666666666666666665555444433
No 194
>KOG4643|consensus
Probab=21.27 E-value=5.1e+02 Score=28.44 Aligned_cols=53 Identities=19% Similarity=0.317 Sum_probs=43.5
Q ss_pred CcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2067 69 DPKIKEELEDLKKQIEALNEKNSDLLDKYKRALADGENARQRFNKQLEESKLY 121 (225)
Q Consensus 69 ~~~~~~~i~~L~~el~~leee~~elkdk~lR~~AEfEN~RkR~~KE~e~akk~ 121 (225)
...++.+++.+++++..|+.+.++--+.++++..|++-++.+..+-..+.-.+
T Consensus 172 ~~hL~velAdle~kir~LrqElEEK~enll~lr~eLddleae~~klrqe~~e~ 224 (1195)
T KOG4643|consen 172 NLHLEVELADLEKKIRTLRQELEEKFENLLRLRNELDDLEAEISKLRQEIEEF 224 (1195)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45678888999999999999999888889999988888888887766665544
No 195
>cd07679 F-BAR_PACSIN2 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Protein kinase C and Casein kinase Substrate in Neurons 2 (PACSIN2). F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Protein kinase C and Casein kinase Substrate in Neurons (PACSIN) proteins, also called Synaptic dynamin-associated proteins (Syndapins), act as regulators of cytoskeletal and membrane dynamics. Vetebrates harbor three isoforms with distinct expression patterns and specific functions. PACSIN 2 or Syndapin II is expressed ubiquitously and is involved in the regulation of tubulin polymerization. It associates with Golgi membranes and forms a complex with dynamin II which is crucial in promoting vesicle formation from the trans-Golgi network. PACSIN 2 contains an N-terminal F-BAR domain and a C-terminal SH3 domain. F-BAR domains form banana-shaped dimers with a positively-charged concave su
Probab=21.20 E-value=4.7e+02 Score=23.82 Aligned_cols=61 Identities=16% Similarity=0.297 Sum_probs=49.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHhhhHH
Q psy2067 74 EELEDLKKQIEALNEKNSDLLDKYKRALADGENARQRFNKQLEESKLYGI------QSFCKDLLDIA 134 (225)
Q Consensus 74 ~~i~~L~~el~~leee~~elkdk~lR~~AEfEN~RkR~~KE~e~akk~ai------e~f~kdLLpVi 134 (225)
..+..+..+++..+.++..-+++|...+.++..++.|..++....-+.-. -.|++++|=.+
T Consensus 168 ~q~~K~~~k~~k~~~~~~k~~~~Y~~~l~~L~~~~~~y~e~m~~~fe~~Q~~E~eRi~F~K~~l~~~ 234 (258)
T cd07679 168 EQLKKLQDKVEKCKQDVLKTKEKYEKSLKELDQTTPQYMENMEQVFEQCQQFEEKRLRFFREVLLEV 234 (258)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 47788999999999999999999999999999999999999887765443 34566555443
No 196
>PRK14149 heat shock protein GrpE; Provisional
Probab=21.18 E-value=5.5e+02 Score=22.28 Aligned_cols=52 Identities=21% Similarity=0.178 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2067 75 ELEDLKKQIEALNEKN----SDLLDKYKRALADGENARQRFNKQLEESKLYGIQSF 126 (225)
Q Consensus 75 ~i~~L~~el~~leee~----~elkdk~lR~~AEfEN~RkR~~KE~e~akk~aie~f 126 (225)
.++.|++++.+++.++ +++.+--.|+..|.++++++.....-...--.+.+|
T Consensus 44 ~~~~l~~e~~elkd~~lR~~AefEN~rKR~~kE~e~~~~~a~~~~~~~LLpVlDnL 99 (191)
T PRK14149 44 IKEDFELKYKEMHEKYLRVHADFENVKKRLERDKSMALEYAYEKIALDLLPVIDAL 99 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhHH
Confidence 4445555555544333 456666678888888888877666554444334333
No 197
>KOG0981|consensus
Probab=20.94 E-value=3.9e+02 Score=27.57 Aligned_cols=51 Identities=25% Similarity=0.317 Sum_probs=38.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHH
Q psy2067 73 KEELEDLKKQIEALNEKNSDLLDKYKRALAD------------GENARQRFNKQLEESKLYGI 123 (225)
Q Consensus 73 ~~~i~~L~~el~~leee~~elkdk~lR~~AE------------fEN~RkR~~KE~e~akk~ai 123 (225)
...++.|..+|..+++++.+..-.+.++.|+ .+-.+++++|-.+++.+..+
T Consensus 635 ~~smekl~~kI~~~keql~e~~~~l~~ak~~~~~~~~~~~~k~~Ek~~k~~~~l~eqi~kl~~ 697 (759)
T KOG0981|consen 635 EKSMEKLAEKIKAKKEQLKEAEAELKSAKADEKKQEGSKEKKEVEKKEKKLERLEEQLKKLEI 697 (759)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccccccccHHHHHHHHHHHHHHHHHHhh
Confidence 4577888999999999999988888888765 56677777776666554433
No 198
>PRK14146 heat shock protein GrpE; Provisional
Probab=20.92 E-value=5.8e+02 Score=22.46 Aligned_cols=59 Identities=22% Similarity=0.295 Sum_probs=40.3
Q ss_pred chhHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2067 71 KIKEELEDLKKQIEALNEKN----SDLLDKYKRALADGENARQRFNKQLEESKLYGIQSFCKD 129 (225)
Q Consensus 71 ~~~~~i~~L~~el~~leee~----~elkdk~lR~~AEfEN~RkR~~KE~e~akk~aie~f~kd 129 (225)
.+..+++.+++++.+++.++ +++.+--.|+..|.+++++......-...--.+.+|-+.
T Consensus 58 ~l~~~l~~l~~e~~el~d~~lR~~AdfeN~rkR~~kE~e~~~~~a~e~~~~~lLpv~DnlerA 120 (215)
T PRK14146 58 SLQKELDNAKKEIESLKDSWARERAEFQNFKRRSAQEFVSIRKEAVKSLVSGFLNPIDNLERV 120 (215)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhHHHHH
Confidence 34556777777777766554 567777788889999998888776665555555555443
No 199
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=20.81 E-value=3.2e+02 Score=24.54 Aligned_cols=50 Identities=14% Similarity=0.216 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy2067 75 ELEDLKKQIEALNEKNSDLLDKYKRALADGENARQRFNKQLEESKLYGIQSFCKDL 130 (225)
Q Consensus 75 ~i~~L~~el~~leee~~elkdk~lR~~AEfEN~RkR~~KE~e~akk~aie~f~kdL 130 (225)
.-+..+....+|++++........-+++|.+.+|+ ++.+-|-.-+|+...
T Consensus 87 QRDRFR~Rn~ELE~elr~~~~~~~~L~~Ev~~L~~------DN~kLYEKiRylqSY 136 (248)
T PF08172_consen 87 QRDRFRQRNAELEEELRKQQQTISSLRREVESLRA------DNVKLYEKIRYLQSY 136 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHhhC
Confidence 33445566666666666666666666666665553 344555555555443
No 200
>PRK14161 heat shock protein GrpE; Provisional
Probab=20.78 E-value=5.3e+02 Score=21.98 Aligned_cols=52 Identities=21% Similarity=0.258 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2067 75 ELEDLKKQIEALNEKN----SDLLDKYKRALADGENARQRFNKQLEESKLYGIQSF 126 (225)
Q Consensus 75 ~i~~L~~el~~leee~----~elkdk~lR~~AEfEN~RkR~~KE~e~akk~aie~f 126 (225)
+++.|++++++++.++ +++.+--.|+..|.++.++......-...--.+.+|
T Consensus 27 ei~~l~~e~~elkd~~lR~~AefeN~rkR~~ke~~~~~~~a~~~~~~~LLpv~Dnl 82 (178)
T PRK14161 27 EITALKAEIEELKDKLIRTTAEIDNTRKRLEKARDEAKDYAIATFAKELLNVSDNL 82 (178)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhHH
Confidence 4455555555544433 455556667777777777777665544443333333
No 201
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=20.76 E-value=7.4e+02 Score=25.17 Aligned_cols=36 Identities=22% Similarity=0.316 Sum_probs=19.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2067 72 IKEELEDLKKQIEALNEKNSDLLDKYKRALADGENA 107 (225)
Q Consensus 72 ~~~~i~~L~~el~~leee~~elkdk~lR~~AEfEN~ 107 (225)
...+++.|+.++..+..++..+.+.+.++.+.+.-+
T Consensus 326 ~~~el~~l~~~l~~l~~~i~~~~~~~~~l~~~~~q~ 361 (594)
T PF05667_consen 326 QEQELEELQEQLDELESQIEELEAEIKMLKSSLKQL 361 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555566666666555555555555554444433
No 202
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=20.74 E-value=9e+02 Score=24.59 Aligned_cols=98 Identities=12% Similarity=0.106 Sum_probs=53.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHhhhHHhhHH
Q psy2067 72 IKEELEDLKKQIEALNEKNSDLLDKY-------KRALADGENARQRFNKQLEESKLYG------IQSFCKDLLDIADTLS 138 (225)
Q Consensus 72 ~~~~i~~L~~el~~leee~~elkdk~-------lR~~AEfEN~RkR~~KE~e~akk~a------ie~f~kdLLpViDnLE 138 (225)
....+..|+.++.+++.++.++..+| ..+.+..+.+++...+|+.....-. ...-...|-.-+++++
T Consensus 286 ~~~~i~~L~~~l~~l~~~~~~l~~~y~~~hP~v~~l~~qi~~l~~~i~~e~~~~~~~~~~~~~~a~~~~~~L~~~l~~~~ 365 (754)
T TIGR01005 286 LEDLIQRLRERQAELRATIADLSTTMLANHPRVVAAKSSLADLDAQIRSELQKITKSLLMQADAAQARESQLVSDVNQLK 365 (754)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34567778888888877777666544 5677788888877777766643221 1111223334455555
Q ss_pred HHhhcCCcccccCCChhHHhHHHHHHHHHHHHHHHh
Q psy2067 139 LANESVPKEEVKDSNPHLKSLYEGLLMTDGNLKKHA 174 (225)
Q Consensus 139 RAL~~~~~~~~~~~~~~~~~l~~Gvemi~kqL~~vL 174 (225)
.-+...+.. ...+..+..-++...+.+...|
T Consensus 366 ~~~~~~~~~-----~~e~~~L~Re~~~~~~~Y~~ll 396 (754)
T TIGR01005 366 AASAQAGEQ-----QVDLDALQRDAAAKRQLYESYL 396 (754)
T ss_pred HHHHhCcHh-----HHHHHHHHHHHHHHHHHHHHHH
Confidence 555444432 1234444444444444444433
No 203
>KOG0288|consensus
Probab=20.57 E-value=4.4e+02 Score=25.97 Aligned_cols=48 Identities=29% Similarity=0.380 Sum_probs=28.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHH
Q psy2067 72 IKEELEDLKKQIEALNEKNSDLLDKYKRALA----------DGENARQRFNKQLEESK 119 (225)
Q Consensus 72 ~~~~i~~L~~el~~leee~~elkdk~lR~~A----------EfEN~RkR~~KE~e~ak 119 (225)
+.+.+...+.+|..|+++..++.+...+..| ..+|.|-|...++.++.
T Consensus 46 i~a~~~~~E~~l~~Lq~e~~~l~e~~v~~~a~~~~~t~~~~~~en~~~r~~~eir~~~ 103 (459)
T KOG0288|consen 46 IKAKLQEKELELNRLQEENTQLNEERVREEATEKTLTVDVLIAENLRIRSLNEIRELR 103 (459)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456666677777777777777666555443 34555556555554444
No 204
>PF06810 Phage_GP20: Phage minor structural protein GP20; InterPro: IPR009636 This family consists of several phage minor structural protein Gp20 sequences and prophage sequences of around 180 residues in length. The function of this family is unknown.; GO: 0005198 structural molecule activity
Probab=20.37 E-value=5e+02 Score=21.49 Aligned_cols=24 Identities=29% Similarity=0.246 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q psy2067 83 IEALNEKNSDLLDKYKRALADGEN 106 (225)
Q Consensus 83 l~~leee~~elkdk~lR~~AEfEN 106 (225)
.++|+.++++|+..+....++++.
T Consensus 53 ~eeLk~~i~~lq~~~~~~~~~~e~ 76 (155)
T PF06810_consen 53 NEELKKQIEELQAKNKTAKEEYEA 76 (155)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555666666666644444443
No 205
>PF13815 Dzip-like_N: Iguana/Dzip1-like DAZ-interacting protein N-terminal
Probab=20.22 E-value=3.8e+02 Score=20.91 Aligned_cols=34 Identities=26% Similarity=0.344 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2067 86 LNEKNSDLLDKYKRALADGENARQRFNKQLEESK 119 (225)
Q Consensus 86 leee~~elkdk~lR~~AEfEN~RkR~~KE~e~ak 119 (225)
|...+..+.+++..+..+.+-++..+.+..++.+
T Consensus 78 L~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~k 111 (118)
T PF13815_consen 78 LSSQLEQLEERLQELQQEIEKLKQKLKKQKEEIK 111 (118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444455555555555555555555555554443
No 206
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=20.20 E-value=3.8e+02 Score=20.03 Aligned_cols=65 Identities=22% Similarity=0.281 Sum_probs=29.1
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHH--HHHHHHHHHHhhhHHh
Q psy2067 71 KIKEELEDLKKQIEALNEKNSDLLDKYKRALADGENA---RQRFNKQLEESK--LYGIQSFCKDLLDIAD 135 (225)
Q Consensus 71 ~~~~~i~~L~~el~~leee~~elkdk~lR~~AEfEN~---RkR~~KE~e~ak--k~aie~f~kdLLpViD 135 (225)
++++++...-..|.-|+-++++++++...+..|..+. |..+.++-+..+ ..+-+.-++.||.-.|
T Consensus 8 kLE~KiqqAvdTI~LLQmEieELKEknn~l~~e~q~~q~~reaL~~eneqlk~e~~~WQerlrsLLGkme 77 (79)
T COG3074 8 KLEAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQHQREALERENEQLKEEQNGWQERLRALLGKME 77 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 3444444444445555555566655555444333322 222233332222 2344555555555444
No 207
>PF11083 Streptin-Immun: Lantibiotic streptin immunity protein; InterPro: IPR021112 Streptococcal species produce a lantibiotic, streptin, in a similar manner to the production of nisin and subtilin by other lactic acid bacteria, in order to compete against competing bacteria within the environment []. The immunity protein protects the bacterium from destruction by its own lantibiotic. In general, there is little homology between the immunity proteins of different genera of bacteria.
Probab=20.19 E-value=2.9e+02 Score=21.74 Aligned_cols=33 Identities=18% Similarity=0.258 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2067 81 KQIEALNEKNSDLLDKYKRALADGENARQRFNK 113 (225)
Q Consensus 81 ~el~~leee~~elkdk~lR~~AEfEN~RkR~~K 113 (225)
-.++..++++..+..++-....++|+.-||+++
T Consensus 52 itle~ve~Ei~~lQ~qL~~~ldeYE~~VrrLE~ 84 (99)
T PF11083_consen 52 ITLEQVEKEIRELQNQLGLYLDEYEKLVRRLEK 84 (99)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456778888888888888888888888888764
No 208
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=20.05 E-value=3.4e+02 Score=19.36 Aligned_cols=29 Identities=17% Similarity=0.337 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2067 80 KKQIEALNEKNSDLLDKYKRALADGENAR 108 (225)
Q Consensus 80 ~~el~~leee~~elkdk~lR~~AEfEN~R 108 (225)
+.++.+.+.+..+|...+.++.-+++.+|
T Consensus 31 e~kLqeaE~rn~eL~~ei~~L~~e~ee~r 59 (61)
T PF08826_consen 31 ESKLQEAEKRNRELEQEIERLKKEMEELR 59 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 33344444444444444444444444433
Done!